Query 001046
Match_columns 1176
No_of_seqs 924 out of 5312
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 08:13:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 6E-110 2E-114 1055.7 62.3 658 514-1175 84-759 (773)
2 3i4u_A ATP-dependent RNA helic 100.0 1.3E-55 4.3E-60 489.5 22.3 251 899-1149 6-257 (270)
3 2va8_A SSO2462, SKI2-type heli 100.0 5.1E-55 1.7E-59 554.4 30.8 507 524-1043 30-624 (715)
4 2p6r_A Afuhel308 helicase; pro 100.0 2.2E-53 7.6E-58 538.1 35.5 491 524-1034 25-594 (702)
5 2zj8_A DNA helicase, putative 100.0 2.2E-51 7.7E-56 521.1 28.3 445 523-987 22-540 (720)
6 3eiq_A Eukaryotic initiation f 100.0 9.9E-39 3.4E-43 377.5 19.1 316 520-867 58-390 (414)
7 4f92_B U5 small nuclear ribonu 100.0 5.7E-37 1.9E-41 413.6 36.3 451 525-983 927-1465(1724)
8 3l9o_A ATP-dependent RNA helic 100.0 4.5E-38 1.5E-42 411.1 24.5 326 521-864 181-597 (1108)
9 4f92_B U5 small nuclear ribonu 100.0 4.7E-37 1.6E-41 414.5 35.0 450 525-986 80-637 (1724)
10 2db3_A ATP-dependent RNA helic 100.0 4.9E-37 1.7E-41 366.9 29.9 305 525-864 79-407 (434)
11 3fht_A ATP-dependent RNA helic 100.0 5.2E-37 1.8E-41 362.3 27.9 318 524-865 47-380 (412)
12 3pey_A ATP-dependent RNA helic 100.0 1.1E-36 3.6E-41 357.0 27.7 319 523-866 26-358 (395)
13 3o8b_A HCV NS3 protease/helica 100.0 4.6E-38 1.6E-42 386.0 15.8 306 515-867 208-517 (666)
14 2z83_A Helicase/nucleoside tri 100.0 1.9E-37 6.6E-42 372.6 18.3 293 533-864 15-313 (459)
15 2jlq_A Serine protease subunit 100.0 9.1E-38 3.1E-42 374.8 14.7 293 532-863 11-310 (451)
16 1s2m_A Putative ATP-dependent 100.0 1.2E-35 4.1E-40 349.9 31.7 310 524-867 43-368 (400)
17 4a4z_A Antiviral helicase SKI2 100.0 1.1E-37 3.9E-42 404.1 15.8 379 523-919 38-556 (997)
18 2j0s_A ATP-dependent RNA helic 100.0 1.1E-36 3.7E-41 360.2 22.6 312 524-867 59-386 (410)
19 2i4i_A ATP-dependent RNA helic 100.0 6.8E-36 2.3E-40 353.8 28.6 311 523-867 36-386 (417)
20 2v1x_A ATP-dependent DNA helic 100.0 1.8E-36 6E-41 373.9 23.9 309 524-867 44-377 (591)
21 1hv8_A Putative ATP-dependent 100.0 1.9E-35 6.4E-40 342.9 31.1 310 523-867 27-348 (367)
22 2v6i_A RNA helicase; membrane, 100.0 4.4E-38 1.5E-42 375.2 8.9 285 538-862 1-288 (431)
23 3fmp_B ATP-dependent RNA helic 100.0 4.5E-37 1.5E-41 371.7 17.1 319 523-865 113-447 (479)
24 1xti_A Probable ATP-dependent 100.0 5.4E-35 1.8E-39 342.8 31.1 311 524-866 30-359 (391)
25 2whx_A Serine protease/ntpase/ 100.0 1.6E-36 5.6E-41 375.4 17.8 301 520-862 170-476 (618)
26 3i5x_A ATP-dependent RNA helic 100.0 2.5E-35 8.6E-40 363.6 26.9 318 525-866 95-451 (563)
27 2xgj_A ATP-dependent RNA helic 100.0 7E-35 2.4E-39 378.0 28.6 323 522-864 84-499 (1010)
28 3sqw_A ATP-dependent RNA helic 100.0 1.2E-34 4E-39 358.9 27.6 317 525-866 44-400 (579)
29 2z0m_A 337AA long hypothetical 100.0 1.3E-34 4.3E-39 332.1 25.4 297 523-863 15-322 (337)
30 1fuu_A Yeast initiation factor 100.0 7.5E-36 2.6E-40 350.2 14.3 313 523-867 42-369 (394)
31 3rc3_A ATP-dependent RNA helic 100.0 1.1E-35 3.7E-40 369.2 14.5 316 535-894 151-476 (677)
32 2ykg_A Probable ATP-dependent 100.0 2.8E-34 9.5E-39 363.2 27.6 317 524-866 13-518 (696)
33 1oyw_A RECQ helicase, ATP-depe 100.0 1.7E-34 5.7E-39 352.4 24.2 302 525-867 26-346 (523)
34 3fho_A ATP-dependent RNA helic 100.0 2.5E-35 8.5E-40 359.0 13.8 316 525-864 142-470 (508)
35 1yks_A Genome polyprotein [con 100.0 2.2E-34 7.7E-39 344.0 20.6 289 535-862 4-297 (440)
36 3oiy_A Reverse gyrase helicase 100.0 3.6E-34 1.2E-38 339.7 20.0 299 522-865 19-366 (414)
37 2wv9_A Flavivirin protease NS2 100.0 9.5E-34 3.2E-38 352.8 20.7 288 536-862 238-531 (673)
38 4a2p_A RIG-I, retinoic acid in 100.0 8.1E-33 2.8E-37 339.6 28.0 324 522-867 5-511 (556)
39 3tbk_A RIG-I helicase domain; 100.0 6.5E-33 2.2E-37 339.9 25.0 324 523-867 3-510 (555)
40 1wp9_A ATP-dependent RNA helic 100.0 7.3E-33 2.5E-37 331.9 21.4 316 522-867 7-478 (494)
41 4gl2_A Interferon-induced heli 100.0 1.8E-33 6.1E-38 355.9 11.9 321 520-862 3-517 (699)
42 4a2q_A RIG-I, retinoic acid in 100.0 2.5E-31 8.6E-36 340.7 27.3 325 522-867 246-752 (797)
43 4a2w_A RIG-I, retinoic acid in 100.0 6E-30 2.1E-34 331.8 28.1 325 522-867 246-752 (936)
44 1gm5_A RECG; helicase, replica 100.0 1.6E-31 5.5E-36 336.6 10.5 303 523-862 367-695 (780)
45 2eyq_A TRCF, transcription-rep 100.0 1.4E-29 4.8E-34 333.0 27.4 299 525-865 604-923 (1151)
46 4ddu_A Reverse gyrase; topoiso 100.0 8.3E-30 2.8E-34 333.2 24.3 342 522-890 76-525 (1104)
47 1gku_B Reverse gyrase, TOP-RG; 100.0 2E-30 6.9E-35 339.1 15.6 266 523-818 56-352 (1054)
48 2oca_A DAR protein, ATP-depend 100.0 3.7E-29 1.3E-33 304.8 17.4 303 522-862 111-453 (510)
49 2fwr_A DNA repair protein RAD2 100.0 1.7E-29 5.8E-34 304.7 13.3 293 522-866 91-456 (472)
50 1tf5_A Preprotein translocase 100.0 5.6E-28 1.9E-32 298.8 21.9 305 522-865 81-546 (844)
51 3llm_A ATP-dependent RNA helic 99.9 2.8E-27 9.7E-32 259.0 20.1 180 514-695 51-235 (235)
52 2fsf_A Preprotein translocase 99.9 5.9E-27 2E-31 288.8 19.6 302 523-865 73-584 (853)
53 3h1t_A Type I site-specific re 99.9 1E-26 3.4E-31 288.5 21.1 302 523-854 177-545 (590)
54 1nkt_A Preprotein translocase 99.9 3.7E-26 1.3E-30 281.8 19.5 310 522-866 109-619 (922)
55 3eaq_A Heat resistant RNA depe 99.9 1.5E-24 5E-29 233.7 11.2 175 718-919 18-211 (212)
56 3dmq_A RNA polymerase-associat 99.9 1.4E-23 4.9E-28 272.6 15.7 314 523-865 152-616 (968)
57 3i32_A Heat resistant RNA depe 99.9 3.7E-24 1.3E-28 241.9 7.6 176 722-924 19-213 (300)
58 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 5.8E-22 2E-26 255.9 21.6 312 523-862 270-707 (1038)
59 1z63_A Helicase of the SNF2/RA 99.9 1.3E-21 4.6E-26 237.5 18.4 308 523-867 36-456 (500)
60 3jux_A Protein translocase sub 99.9 1.3E-20 4.3E-25 228.0 21.5 163 670-866 411-589 (822)
61 1c4o_A DNA nucleotide excision 99.8 1.1E-18 3.9E-23 217.9 27.3 114 730-865 438-551 (664)
62 1z3i_X Similar to RAD54-like; 99.8 1.1E-18 3.6E-23 218.1 23.8 309 524-867 55-531 (644)
63 3mwy_W Chromo domain-containin 99.8 8.2E-19 2.8E-23 224.5 19.0 310 523-868 235-688 (800)
64 3iuy_A Probable ATP-dependent 99.8 1.6E-18 5.3E-23 188.2 16.9 167 524-693 42-225 (228)
65 2d7d_A Uvrabc system protein B 99.8 9.7E-18 3.3E-22 209.4 26.1 115 729-865 443-557 (661)
66 3fmo_B ATP-dependent RNA helic 99.8 2.8E-18 9.6E-23 194.5 16.9 169 523-692 113-293 (300)
67 3ber_A Probable ATP-dependent 99.8 3.4E-18 1.2E-22 188.6 16.4 170 522-693 63-244 (249)
68 1qde_A EIF4A, translation init 99.8 4.9E-18 1.7E-22 183.5 17.3 174 523-698 35-219 (224)
69 3ly5_A ATP-dependent RNA helic 99.8 1.8E-18 6.1E-23 192.3 14.0 164 524-690 76-256 (262)
70 1vec_A ATP-dependent RNA helic 99.8 8.4E-18 2.9E-22 179.1 18.2 167 524-692 25-203 (206)
71 3dkp_A Probable ATP-dependent 99.8 7.1E-18 2.4E-22 185.1 17.5 169 524-693 51-237 (245)
72 3bor_A Human initiation factor 99.8 6.1E-18 2.1E-22 184.9 16.5 167 525-693 53-231 (237)
73 2pl3_A Probable ATP-dependent 99.8 8.8E-18 3E-22 183.3 17.2 171 523-696 46-233 (236)
74 2rb4_A ATP-dependent RNA helic 99.8 2.5E-18 8.7E-23 179.1 12.1 135 702-866 8-149 (175)
75 2hjv_A ATP-dependent RNA helic 99.8 2.9E-18 9.8E-23 176.6 12.3 134 702-866 10-144 (163)
76 3fe2_A Probable ATP-dependent 99.8 3.2E-18 1.1E-22 187.7 13.4 165 525-692 52-233 (242)
77 1q0u_A Bstdead; DEAD protein, 99.7 1.1E-17 3.7E-22 180.4 16.6 169 523-693 25-208 (219)
78 2oxc_A Probable ATP-dependent 99.7 6.7E-18 2.3E-22 183.7 15.0 167 525-692 47-224 (230)
79 2gxq_A Heat resistant RNA depe 99.7 9.7E-18 3.3E-22 178.7 15.7 166 523-693 22-202 (207)
80 1fuk_A Eukaryotic initiation f 99.7 2.6E-18 8.9E-23 177.3 10.5 116 724-866 23-139 (165)
81 1t5i_A C_terminal domain of A 99.7 6.3E-18 2.1E-22 175.8 11.7 132 702-864 6-138 (172)
82 1t6n_A Probable ATP-dependent 99.7 4.3E-17 1.5E-21 175.7 17.3 167 525-692 37-216 (220)
83 2jgn_A DBX, DDX3, ATP-dependen 99.7 1.4E-17 4.7E-22 175.3 11.7 110 730-866 45-155 (185)
84 1wrb_A DJVLGB; RNA helicase, D 99.7 6.7E-17 2.3E-21 178.2 15.9 166 524-692 45-235 (253)
85 2p6n_A ATP-dependent RNA helic 99.7 2E-17 6.8E-22 175.0 10.9 108 730-864 53-161 (191)
86 2yjt_D ATP-dependent RNA helic 99.5 3.1E-18 1E-22 177.7 0.0 118 722-866 21-139 (170)
87 3b6e_A Interferon-induced heli 99.7 3.2E-16 1.1E-20 167.6 12.4 154 521-677 30-216 (216)
88 2ipc_A Preprotein translocase 99.7 5.2E-15 1.8E-19 182.3 24.2 120 523-646 78-212 (997)
89 2eqs_A ATP-dependent RNA helic 99.6 2.4E-15 8.4E-20 142.2 10.5 89 218-306 7-97 (103)
90 2cqo_A Nucleolar protein of 40 99.6 7.7E-15 2.6E-19 142.3 11.0 91 217-308 16-110 (119)
91 2vl7_A XPD; helicase, unknown 99.5 3.2E-14 1.1E-18 174.1 16.9 116 729-860 382-518 (540)
92 1rif_A DAR protein, DNA helica 99.5 1.8E-14 6.1E-19 161.6 11.9 148 523-679 112-263 (282)
93 1kl9_A Eukaryotic translation 99.5 3.7E-15 1.3E-19 154.6 5.1 96 220-321 12-109 (182)
94 1luz_A Protein K3, protein K2; 99.5 2.2E-14 7.4E-19 131.4 8.0 77 220-298 8-87 (88)
95 2a19_A EIF-2- alpha, eukaryoti 99.5 1.3E-14 4.5E-19 149.8 5.5 95 221-321 13-109 (175)
96 2fz4_A DNA repair protein RAD2 99.4 4E-13 1.4E-17 146.8 12.8 138 523-679 92-229 (237)
97 2khi_A 30S ribosomal protein S 99.4 3.5E-13 1.2E-17 130.1 10.6 87 217-311 24-113 (115)
98 2k4k_A GSP13, general stress p 99.4 6.5E-13 2.2E-17 130.9 9.5 78 219-298 3-82 (130)
99 3crv_A XPD/RAD3 related DNA he 99.3 5.9E-11 2E-15 145.6 25.6 313 524-860 3-528 (551)
100 2k52_A Uncharacterized protein 99.3 4.3E-12 1.5E-16 114.3 10.5 72 220-297 2-75 (80)
101 2khj_A 30S ribosomal protein S 99.3 3.2E-12 1.1E-16 122.2 9.9 79 218-298 26-106 (109)
102 1q8k_A Eukaryotic translation 99.3 8.5E-13 2.9E-17 147.4 6.2 97 219-321 9-107 (308)
103 3aev_A Translation initiation 99.3 1.7E-12 5.9E-17 143.2 6.4 95 219-319 7-103 (275)
104 1z5z_A Helicase of the SNF2/RA 99.2 8.8E-12 3E-16 138.9 6.6 112 730-867 111-227 (271)
105 3cw2_C Translation initiation 99.2 8.1E-12 2.8E-16 137.6 5.4 92 218-315 6-99 (266)
106 4aid_A Polyribonucleotide nucl 99.2 2.7E-12 9.3E-17 157.7 0.0 86 218-305 632-718 (726)
107 3cdi_A Polynucleotide phosphor 99.1 4.1E-12 1.4E-16 157.0 0.0 89 218-308 622-711 (723)
108 1e3p_A Guanosine pentaphosphat 99.0 2.6E-11 8.8E-16 150.5 -2.0 87 219-313 663-754 (757)
109 4a15_A XPD helicase, ATP-depen 99.0 6.7E-09 2.3E-13 128.7 17.6 174 670-860 377-581 (620)
110 3psi_A Transcription elongatio 98.9 1.8E-09 6E-14 139.6 9.9 80 217-298 896-978 (1219)
111 1wi5_A RRP5 protein homolog; S 98.9 1.7E-09 5.8E-14 104.9 7.3 76 219-295 17-95 (119)
112 4ayb_E DNA-directed RNA polyme 98.9 3E-09 1E-13 111.0 9.6 73 219-294 77-166 (180)
113 1go3_E DNA-directed RNA polyme 98.9 3.5E-09 1.2E-13 111.2 9.9 73 220-295 78-168 (187)
114 3bzc_A TEX; helix-turn-helix, 98.8 1.1E-09 3.9E-14 136.1 4.7 76 219-296 650-727 (785)
115 2nn6_I 3'-5' exoribonuclease C 98.8 7.5E-09 2.6E-13 109.9 9.3 76 220-295 78-163 (209)
116 3m7n_A Putative uncharacterize 98.8 1.1E-08 3.6E-13 106.4 8.0 72 220-295 55-134 (179)
117 3psf_A Transcription elongatio 98.8 9.6E-10 3.3E-14 140.0 0.0 79 218-298 900-981 (1030)
118 3go5_A Multidomain protein wit 98.7 2.7E-08 9.2E-13 110.6 10.3 71 218-298 147-220 (285)
119 1y14_B B16, RPB7, DNA-directed 98.7 3.6E-08 1.2E-12 101.8 9.7 71 220-294 80-165 (171)
120 2b8k_G B16, DNA-directed RNA p 98.7 3.2E-08 1.1E-12 105.2 9.3 72 220-295 80-166 (215)
121 2c35_B Human RPB7, DNA-directe 98.6 4.9E-08 1.7E-12 100.9 9.2 71 220-294 78-165 (172)
122 2je6_I RRP4, exosome complex R 98.6 7.9E-08 2.7E-12 104.8 8.6 73 220-294 71-147 (251)
123 3h0g_G DNA-directed RNA polyme 98.5 5.7E-08 2E-12 100.3 5.8 71 220-294 81-166 (172)
124 2ba0_A Archeal exosome RNA bin 98.5 3.2E-07 1.1E-11 98.8 9.6 73 220-294 54-128 (229)
125 2z0s_A Probable exosome comple 98.4 2.9E-07 1E-11 99.7 7.8 73 220-294 63-140 (235)
126 3go5_A Multidomain protein wit 98.3 7.2E-07 2.4E-11 99.1 8.1 93 220-323 66-160 (285)
127 1w36_D RECD, exodeoxyribonucle 98.1 3.6E-06 1.2E-10 104.2 9.9 65 526-590 151-218 (608)
128 2ckz_B C25, DNA-directed RNA p 98.1 5.5E-06 1.9E-10 88.3 8.2 63 220-284 78-154 (218)
129 2bx2_L Ribonuclease E, RNAse E 98.0 8E-06 2.7E-10 97.0 9.6 64 219-284 41-115 (517)
130 3ayh_B DNA-directed RNA polyme 98.0 7.1E-06 2.4E-10 86.8 8.2 62 220-284 78-158 (203)
131 2id0_A Exoribonuclease 2; RNAs 98.0 1.1E-05 3.7E-10 99.9 9.7 71 221-292 556-642 (644)
132 2bh8_A 1B11; transcription, mo 97.8 1.5E-05 5E-10 74.7 4.4 43 219-263 57-99 (101)
133 3e1s_A Exodeoxyribonuclease V, 97.7 4.6E-05 1.6E-09 93.4 9.5 64 523-587 188-251 (574)
134 2wp8_J Exosome complex exonucl 97.7 2.2E-05 7.7E-10 100.7 7.0 69 224-293 887-977 (977)
135 4b3f_X DNA-binding protein smu 97.6 4.6E-05 1.6E-09 95.1 7.1 66 524-590 189-255 (646)
136 3upu_A ATP-dependent DNA helic 97.6 8.6E-05 2.9E-09 88.7 9.2 64 525-588 26-94 (459)
137 2nn6_H Exosome complex exonucl 97.6 4.8E-05 1.7E-09 84.9 6.4 73 220-294 92-175 (308)
138 2vnu_D Exosome complex exonucl 97.6 4.8E-05 1.6E-09 95.8 7.1 68 225-293 671-760 (760)
139 1hh2_P NUSA, N utilization sub 97.4 0.00024 8.3E-09 80.2 8.6 65 222-295 133-201 (344)
140 2b8t_A Thymidine kinase; deoxy 97.3 0.00071 2.4E-08 72.6 10.9 115 537-677 10-125 (223)
141 2ja9_A Exosome complex exonucl 97.3 0.00048 1.6E-08 70.7 8.6 71 220-292 4-75 (175)
142 3lfu_A DNA helicase II; SF1 he 97.2 0.008 2.8E-07 74.6 20.0 70 524-595 9-81 (647)
143 3ec2_A DNA replication protein 96.9 0.0057 1.9E-07 62.7 12.1 25 538-562 37-61 (180)
144 2orw_A Thymidine kinase; TMTK, 96.9 0.0016 5.6E-08 67.6 8.0 39 538-577 2-40 (184)
145 3cpe_A Terminase, DNA packagin 96.9 0.012 4.2E-07 72.3 17.1 71 522-592 161-232 (592)
146 3kl4_A SRP54, signal recogniti 96.9 0.0032 1.1E-07 74.0 10.9 122 539-678 97-223 (433)
147 1xx6_A Thymidine kinase; NESG, 96.8 0.0029 1E-07 66.1 9.0 39 538-577 7-45 (191)
148 2o0j_A Terminase, DNA packagin 96.7 0.025 8.4E-07 65.5 16.9 152 522-687 161-323 (385)
149 1x4q_A U4/U6 small nuclear rib 96.6 0.0043 1.5E-07 56.6 7.5 72 10-82 10-82 (92)
150 2gk6_A Regulator of nonsense t 96.6 0.003 1E-07 78.3 8.5 67 524-590 180-246 (624)
151 3te6_A Regulatory protein SIR3 96.5 0.011 3.6E-07 66.8 11.6 44 635-679 131-174 (318)
152 3dm5_A SRP54, signal recogniti 96.5 0.0046 1.6E-07 72.7 8.9 122 539-678 100-224 (443)
153 2px0_A Flagellar biosynthesis 96.5 0.0064 2.2E-07 68.1 9.5 125 538-685 104-231 (296)
154 2xzl_A ATP-dependent helicase 96.4 0.0038 1.3E-07 79.4 7.5 67 524-590 360-426 (802)
155 2w58_A DNAI, primosome compone 96.3 0.013 4.6E-07 61.0 10.2 34 540-574 55-88 (202)
156 2wjy_A Regulator of nonsense t 96.3 0.0061 2.1E-07 77.4 8.8 67 524-590 356-422 (800)
157 2orv_A Thymidine kinase; TP4A 96.3 0.0065 2.2E-07 65.0 7.6 40 538-578 18-57 (234)
158 1k0r_A NUSA; two component arr 96.3 0.0069 2.4E-07 68.6 8.0 68 221-294 128-204 (366)
159 2j9r_A Thymidine kinase; TK1, 96.2 0.0066 2.3E-07 64.3 7.4 40 538-578 27-66 (214)
160 2kjq_A DNAA-related protein; s 96.2 0.0056 1.9E-07 61.3 6.1 25 538-562 35-59 (149)
161 1vma_A Cell division protein F 96.1 0.023 7.8E-07 63.8 11.2 123 538-678 103-234 (306)
162 1njg_A DNA polymerase III subu 96.0 0.034 1.2E-06 58.6 11.4 32 531-562 34-68 (250)
163 3e2i_A Thymidine kinase; Zn-bi 95.9 0.0079 2.7E-07 63.6 5.9 41 537-578 26-66 (219)
164 1a5t_A Delta prime, HOLB; zinc 95.9 0.017 6E-07 65.6 9.4 38 525-562 3-47 (334)
165 2nn6_G Exosome complex exonucl 95.7 0.017 5.9E-07 63.8 7.9 72 220-294 124-196 (289)
166 2zpa_A Uncharacterized protein 95.6 0.0097 3.3E-07 73.1 6.1 110 527-679 178-289 (671)
167 1fnn_A CDC6P, cell division co 95.6 0.024 8.1E-07 65.2 9.1 22 541-562 46-67 (389)
168 2w0m_A SSO2452; RECA, SSPF, un 95.6 0.016 5.6E-07 61.3 7.0 38 536-574 20-57 (235)
169 3syl_A Protein CBBX; photosynt 95.5 0.032 1.1E-06 62.2 9.4 22 539-560 67-88 (309)
170 2v1u_A Cell division control p 95.4 0.022 7.6E-07 65.3 7.9 25 538-562 43-67 (387)
171 2qby_B CDC6 homolog 3, cell di 95.4 0.024 8.3E-07 65.1 8.2 24 539-562 45-68 (384)
172 3n70_A Transport activator; si 95.4 0.026 8.8E-07 55.8 7.2 29 531-559 16-44 (145)
173 2pt7_A CAG-ALFA; ATPase, prote 95.3 0.051 1.7E-06 61.7 10.4 114 535-684 167-281 (330)
174 2chg_A Replication factor C sm 95.3 0.066 2.3E-06 55.7 10.6 31 531-561 28-60 (226)
175 3vkw_A Replicase large subunit 95.3 0.02 7E-07 67.1 7.0 108 538-677 160-269 (446)
176 2qgz_A Helicase loader, putati 95.2 0.019 6.5E-07 64.6 6.4 36 539-574 152-187 (308)
177 2asb_A Transcription elongatio 95.2 0.035 1.2E-06 59.5 8.0 68 222-295 6-82 (251)
178 1ls1_A Signal recognition part 95.1 0.072 2.5E-06 59.4 10.7 125 538-679 97-223 (295)
179 3bos_A Putative DNA replicatio 95.1 0.032 1.1E-06 59.3 7.3 25 538-562 51-75 (242)
180 2p65_A Hypothetical protein PF 95.0 0.062 2.1E-06 54.3 8.8 24 539-562 43-66 (187)
181 2qen_A Walker-type ATPase; unk 94.9 0.091 3.1E-06 59.1 11.0 32 531-562 23-54 (350)
182 3e70_C DPA, signal recognition 94.9 0.041 1.4E-06 62.4 7.9 124 538-679 128-254 (328)
183 1w4r_A Thymidine kinase; type 94.9 0.027 9.3E-07 58.7 5.7 39 538-577 19-57 (195)
184 1l8q_A Chromosomal replication 94.8 0.1 3.5E-06 58.7 10.9 36 539-575 37-72 (324)
185 3h4m_A Proteasome-activating n 94.8 0.04 1.4E-06 60.6 7.3 26 537-562 49-74 (285)
186 3b9p_A CG5977-PA, isoform A; A 94.8 0.085 2.9E-06 58.4 10.0 25 538-562 53-77 (297)
187 1cr0_A DNA primase/helicase; R 94.6 0.063 2.1E-06 59.6 8.4 39 536-574 32-70 (296)
188 2yhs_A FTSY, cell division pro 94.6 0.11 3.9E-06 61.6 10.8 124 538-679 292-424 (503)
189 2qby_A CDC6 homolog 1, cell di 94.6 0.036 1.2E-06 63.4 6.5 24 539-562 45-68 (386)
190 1sxj_E Activator 1 40 kDa subu 94.6 0.098 3.4E-06 59.4 10.1 43 634-678 132-174 (354)
191 1jr3_A DNA polymerase III subu 94.6 0.098 3.4E-06 59.7 10.1 31 532-562 28-61 (373)
192 1sxj_A Activator 1 95 kDa subu 94.4 0.096 3.3E-06 63.2 10.1 25 539-563 77-101 (516)
193 3vfd_A Spastin; ATPase, microt 94.3 0.1 3.4E-06 60.5 9.6 24 539-562 148-171 (389)
194 1iqp_A RFCS; clamp loader, ext 94.2 0.14 4.7E-06 57.1 10.2 31 532-562 37-69 (327)
195 1d2n_A N-ethylmaleimide-sensit 94.2 0.098 3.3E-06 57.3 8.6 23 540-562 65-87 (272)
196 2bjv_A PSP operon transcriptio 94.1 0.12 4.1E-06 56.2 9.1 25 536-560 26-50 (265)
197 3u61_B DNA polymerase accessor 94.0 0.23 7.8E-06 55.7 11.4 30 532-561 38-70 (324)
198 2bh8_A 1B11; transcription, mo 94.0 0.099 3.4E-06 48.6 6.8 59 222-284 12-73 (101)
199 1uaa_A REP helicase, protein ( 93.9 0.042 1.4E-06 68.6 5.7 68 525-594 3-73 (673)
200 1j8m_F SRP54, signal recogniti 93.9 0.18 6.3E-06 56.2 10.2 122 539-678 98-224 (297)
201 3u4q_A ATP-dependent helicase/ 93.9 0.047 1.6E-06 72.9 6.2 69 523-593 9-82 (1232)
202 2ffh_A Protein (FFH); SRP54, s 93.8 0.3 1E-05 57.2 12.1 123 538-678 97-222 (425)
203 1xwi_A SKD1 protein; VPS4B, AA 93.6 0.14 4.9E-06 57.7 8.8 24 539-562 45-68 (322)
204 1pjr_A PCRA; DNA repair, DNA r 93.6 0.074 2.5E-06 67.0 7.0 69 524-594 11-82 (724)
205 2qp9_X Vacuolar protein sortin 93.5 0.11 3.8E-06 59.4 7.9 25 539-563 84-108 (355)
206 2qz4_A Paraplegin; AAA+, SPG7, 93.5 0.081 2.8E-06 57.2 6.3 25 538-562 38-62 (262)
207 2fna_A Conserved hypothetical 93.5 0.33 1.1E-05 54.6 11.6 24 540-563 31-54 (357)
208 3eie_A Vacuolar protein sortin 93.5 0.2 6.7E-06 56.4 9.6 24 539-562 51-74 (322)
209 2gno_A DNA polymerase III, gam 93.4 0.23 7.9E-06 55.6 10.0 28 533-560 10-39 (305)
210 2r6a_A DNAB helicase, replicat 93.3 0.067 2.3E-06 63.5 5.7 40 535-574 199-238 (454)
211 1hqc_A RUVB; extended AAA-ATPa 93.3 0.33 1.1E-05 54.2 11.2 24 539-562 38-61 (324)
212 3pfi_A Holliday junction ATP-d 93.2 0.29 1E-05 55.1 10.5 21 540-560 56-76 (338)
213 1sxj_D Activator 1 41 kDa subu 93.2 0.094 3.2E-06 59.4 6.4 32 531-562 48-81 (353)
214 1sxj_C Activator 1 40 kDa subu 93.2 0.23 7.8E-06 56.3 9.6 31 532-562 37-69 (340)
215 3cf0_A Transitional endoplasmi 93.2 0.19 6.5E-06 56.0 8.8 26 537-562 47-72 (301)
216 1w5s_A Origin recognition comp 93.1 0.087 3E-06 61.0 6.1 24 539-562 50-75 (412)
217 1zu4_A FTSY; GTPase, signal re 93.0 0.37 1.3E-05 54.3 10.9 127 538-679 104-240 (320)
218 2z4s_A Chromosomal replication 92.9 0.54 1.8E-05 55.4 12.7 23 539-561 130-152 (440)
219 1ojl_A Transcriptional regulat 92.9 0.3 1E-05 54.6 9.9 24 537-560 23-46 (304)
220 2xxa_A Signal recognition part 92.9 0.32 1.1E-05 57.2 10.5 122 540-678 101-225 (433)
221 2j37_W Signal recognition part 92.6 0.39 1.3E-05 57.5 10.8 121 540-678 102-225 (504)
222 3d8b_A Fidgetin-like protein 1 92.5 0.14 4.7E-06 58.7 6.6 25 538-562 116-140 (357)
223 3t15_A Ribulose bisphosphate c 92.4 0.39 1.3E-05 53.3 9.9 24 540-563 37-60 (293)
224 3k1j_A LON protease, ATP-depen 92.4 1.2 3.9E-05 54.8 15.0 32 530-561 51-82 (604)
225 3b9q_A Chloroplast SRP recepto 92.3 0.66 2.3E-05 51.8 11.6 52 537-589 98-151 (302)
226 4b4t_J 26S protease regulatory 92.2 0.26 8.8E-06 57.1 8.4 24 539-562 182-205 (405)
227 1rj9_A FTSY, signal recognitio 92.2 0.36 1.2E-05 54.0 9.4 35 538-573 101-135 (304)
228 1g5t_A COB(I)alamin adenosyltr 92.2 0.11 3.6E-06 54.3 4.6 39 538-577 27-65 (196)
229 2og2_A Putative signal recogni 92.0 0.72 2.5E-05 52.7 11.7 47 538-585 156-204 (359)
230 4fcw_A Chaperone protein CLPB; 92.0 0.27 9.2E-06 54.5 8.0 23 540-562 48-70 (311)
231 2q6t_A DNAB replication FORK h 91.8 0.2 6.9E-06 59.1 7.0 43 532-574 193-235 (444)
232 3pvs_A Replication-associated 91.7 0.23 7.8E-06 58.7 7.3 28 534-561 43-72 (447)
233 4b4t_H 26S protease regulatory 91.6 0.31 1.1E-05 57.3 8.2 25 538-562 242-266 (467)
234 2zan_A Vacuolar protein sortin 91.6 0.28 9.7E-06 57.9 8.0 24 539-562 167-190 (444)
235 1sxj_B Activator 1 37 kDa subu 91.4 0.4 1.4E-05 53.2 8.7 31 532-562 33-65 (323)
236 2v3c_C SRP54, signal recogniti 91.0 0.088 3E-06 62.0 2.7 119 540-678 100-222 (432)
237 4b4t_M 26S protease regulatory 90.8 0.27 9.3E-06 57.6 6.6 24 539-562 215-238 (434)
238 4aby_A DNA repair protein RECN 90.7 0.56 1.9E-05 54.5 9.3 59 619-678 296-356 (415)
239 3pxi_A Negative regulator of g 90.6 0.76 2.6E-05 58.0 11.1 19 541-559 523-541 (758)
240 2eyu_A Twitching motility prot 90.5 0.16 5.3E-06 55.7 4.1 38 536-573 22-59 (261)
241 3b85_A Phosphate starvation-in 90.2 0.22 7.6E-06 52.5 4.7 34 528-561 11-44 (208)
242 4b4t_L 26S protease subunit RP 89.9 0.42 1.5E-05 56.0 7.3 24 539-562 215-238 (437)
243 4b4t_K 26S protease regulatory 89.6 0.54 1.9E-05 55.0 7.8 24 539-562 206-229 (428)
244 4b4t_I 26S protease regulatory 89.6 0.55 1.9E-05 54.7 7.8 24 539-562 216-239 (437)
245 2chq_A Replication factor C sm 89.5 0.2 6.7E-06 55.6 3.9 22 541-562 40-61 (319)
246 3v53_A RNA-binding protein 25; 89.4 0.44 1.5E-05 45.1 5.5 62 18-79 47-108 (119)
247 3jvv_A Twitching mobility prot 89.3 0.26 8.8E-06 56.5 4.7 37 537-573 121-157 (356)
248 1kgd_A CASK, peripheral plasma 89.3 0.21 7.2E-06 51.0 3.6 25 538-562 4-28 (180)
249 3hr8_A Protein RECA; alpha and 89.1 0.27 9.3E-06 56.2 4.7 39 537-576 59-97 (356)
250 1xp8_A RECA protein, recombina 89.0 1.3 4.6E-05 50.7 10.4 38 537-575 72-109 (366)
251 2ce7_A Cell division protein F 88.9 0.54 1.9E-05 55.9 7.2 23 540-562 50-72 (476)
252 3ney_A 55 kDa erythrocyte memb 88.8 0.23 7.8E-06 51.9 3.4 26 537-562 17-42 (197)
253 3hu3_A Transitional endoplasmi 88.8 0.7 2.4E-05 55.2 8.2 24 538-561 237-260 (489)
254 3cmu_A Protein RECA, recombina 88.8 0.51 1.7E-05 64.8 7.6 90 538-646 1426-1515(2050)
255 2ewv_A Twitching motility prot 88.6 0.25 8.4E-06 57.0 3.9 39 536-574 133-171 (372)
256 3tr0_A Guanylate kinase, GMP k 88.5 0.23 8E-06 51.3 3.4 25 537-561 5-29 (205)
257 3co5_A Putative two-component 88.3 0.28 9.6E-06 48.1 3.6 29 529-557 17-45 (143)
258 1p9r_A General secretion pathw 88.2 0.75 2.6E-05 53.7 7.8 45 529-574 155-201 (418)
259 2zts_A Putative uncharacterize 88.1 0.3 1E-05 52.1 3.9 38 537-574 28-65 (251)
260 1r6b_X CLPA protein; AAA+, N-t 88.1 0.18 6.3E-06 63.7 2.6 54 24-82 14-67 (758)
261 2gza_A Type IV secretion syste 87.9 0.28 9.4E-06 56.3 3.8 39 535-574 171-209 (361)
262 4a1f_A DNAB helicase, replicat 87.7 0.71 2.4E-05 52.3 6.9 51 536-588 43-93 (338)
263 1jjg_A M156R; beta barrel, S1 87.6 1.5 5E-05 39.0 7.1 65 220-286 29-94 (102)
264 3tau_A Guanylate kinase, GMP k 87.6 0.31 1.1E-05 51.0 3.6 26 537-562 6-31 (208)
265 2j41_A Guanylate kinase; GMP, 87.5 0.29 1E-05 50.6 3.4 25 536-560 3-27 (207)
266 3cf2_A TER ATPase, transitiona 87.4 1.1 3.6E-05 56.6 8.9 24 539-562 238-261 (806)
267 1lvg_A Guanylate kinase, GMP k 87.4 0.28 9.7E-06 51.0 3.1 24 538-561 3-26 (198)
268 2oap_1 GSPE-2, type II secreti 87.1 0.41 1.4E-05 57.5 4.7 26 534-559 255-280 (511)
269 2ehv_A Hypothetical protein PH 87.0 0.27 9.3E-06 52.4 2.9 27 536-562 27-53 (251)
270 2cvh_A DNA repair and recombin 86.9 0.34 1.2E-05 50.6 3.5 35 536-574 17-51 (220)
271 1znw_A Guanylate kinase, GMP k 86.8 0.36 1.2E-05 50.4 3.6 26 535-560 16-41 (207)
272 1z6g_A Guanylate kinase; struc 86.8 0.33 1.1E-05 51.3 3.4 26 536-561 20-45 (218)
273 1zp6_A Hypothetical protein AT 86.6 0.25 8.5E-06 50.6 2.2 25 536-560 6-30 (191)
274 1n0w_A DNA repair protein RAD5 86.5 0.45 1.5E-05 50.5 4.2 28 536-563 21-48 (243)
275 2l8b_A Protein TRAI, DNA helic 86.4 1.2 4.1E-05 45.6 6.9 124 523-677 33-158 (189)
276 1qvr_A CLPB protein; coiled co 86.4 1.5 5.3E-05 56.0 9.8 24 539-562 191-214 (854)
277 3a00_A Guanylate kinase, GMP k 86.2 0.38 1.3E-05 49.3 3.3 23 539-561 1-23 (186)
278 4gp7_A Metallophosphoesterase; 86.2 0.21 7.2E-06 50.7 1.3 22 537-558 7-28 (171)
279 1jbk_A CLPB protein; beta barr 86.0 0.76 2.6E-05 46.1 5.5 32 531-562 33-66 (195)
280 3vaa_A Shikimate kinase, SK; s 85.6 0.55 1.9E-05 48.6 4.2 27 537-563 23-49 (199)
281 3cf2_A TER ATPase, transitiona 85.6 1.4 4.9E-05 55.5 8.7 102 539-678 511-624 (806)
282 2v9p_A Replication protein E1; 85.6 0.46 1.6E-05 53.1 3.8 36 536-575 123-158 (305)
283 2r7d_A Ribonuclease II family 85.5 1.2 4.1E-05 52.7 7.5 57 222-292 402-460 (469)
284 4f4c_A Multidrug resistance pr 85.4 1.4 4.6E-05 59.2 8.9 55 620-678 556-613 (1321)
285 3umf_A Adenylate kinase; rossm 85.1 0.44 1.5E-05 50.5 3.2 27 537-563 27-53 (217)
286 2dr3_A UPF0273 protein PH0284; 85.1 0.81 2.8E-05 48.5 5.3 37 537-574 21-57 (247)
287 3b5x_A Lipid A export ATP-bind 84.3 0.42 1.4E-05 58.4 3.0 59 619-678 481-539 (582)
288 3d0f_A Penicillin-binding 1 tr 84.1 2.5 8.7E-05 39.2 7.6 59 219-279 29-93 (106)
289 1kht_A Adenylate kinase; phosp 84.1 0.59 2E-05 47.5 3.6 25 538-562 2-26 (192)
290 1e9r_A Conjugal transfer prote 83.8 0.59 2E-05 54.8 3.9 43 538-581 52-94 (437)
291 2qor_A Guanylate kinase; phosp 83.5 0.59 2E-05 48.6 3.3 26 537-562 10-35 (204)
292 1mp1_A Ser/Arg-related nuclear 83.5 1.4 4.7E-05 41.3 5.4 63 18-80 25-89 (111)
293 3trf_A Shikimate kinase, SK; a 83.5 0.79 2.7E-05 46.5 4.2 25 539-563 5-29 (185)
294 1s96_A Guanylate kinase, GMP k 83.3 0.67 2.3E-05 49.2 3.6 27 536-562 13-39 (219)
295 3lnc_A Guanylate kinase, GMP k 83.2 0.34 1.2E-05 51.5 1.3 25 536-560 24-48 (231)
296 1ypw_A Transitional endoplasmi 83.1 1.2 4.2E-05 56.5 6.6 25 537-561 236-260 (806)
297 3exa_A TRNA delta(2)-isopenten 83.1 0.58 2E-05 52.4 3.1 22 539-560 3-24 (322)
298 3lw7_A Adenylate kinase relate 82.8 0.66 2.3E-05 46.1 3.3 20 540-559 2-21 (179)
299 3sr0_A Adenylate kinase; phosp 82.8 0.76 2.6E-05 48.2 3.8 23 541-563 2-24 (206)
300 4ag6_A VIRB4 ATPase, type IV s 82.8 0.88 3E-05 52.5 4.8 41 538-579 34-74 (392)
301 3lda_A DNA repair protein RAD5 82.7 1.4 4.7E-05 51.2 6.3 38 537-574 176-218 (400)
302 1qvr_A CLPB protein; coiled co 82.5 2 6.9E-05 54.9 8.4 53 24-79 18-70 (854)
303 3a8t_A Adenylate isopentenyltr 82.3 0.63 2.2E-05 52.6 3.1 22 538-559 39-60 (339)
304 4eun_A Thermoresistant glucoki 82.3 0.77 2.6E-05 47.5 3.6 26 537-562 27-52 (200)
305 3ux8_A Excinuclease ABC, A sub 82.2 1.5 5.3E-05 54.4 6.9 138 536-675 41-261 (670)
306 4a74_A DNA repair and recombin 82.0 0.49 1.7E-05 49.7 1.9 27 536-562 22-48 (231)
307 2c95_A Adenylate kinase 1; tra 81.9 1.1 3.6E-05 45.8 4.5 28 536-563 6-33 (196)
308 1zd8_A GTP:AMP phosphotransfer 81.8 0.85 2.9E-05 48.2 3.8 26 537-562 5-30 (227)
309 3tif_A Uncharacterized ABC tra 81.6 0.5 1.7E-05 50.7 1.9 25 536-560 28-52 (235)
310 3cm0_A Adenylate kinase; ATP-b 81.6 0.74 2.5E-05 46.7 3.1 25 538-562 3-27 (186)
311 1kag_A SKI, shikimate kinase I 81.5 0.8 2.7E-05 45.8 3.3 24 539-562 4-27 (173)
312 2dhr_A FTSH; AAA+ protein, hex 81.4 5.4 0.00018 47.6 10.9 23 540-562 65-87 (499)
313 3kb2_A SPBC2 prophage-derived 81.4 1 3.4E-05 44.9 4.0 22 541-562 3-24 (173)
314 1qhx_A CPT, protein (chloramph 81.2 0.84 2.9E-05 45.9 3.4 23 539-561 3-25 (178)
315 4f4c_A Multidrug resistance pr 81.2 1.7 6E-05 58.2 7.3 58 620-678 1219-1276(1321)
316 2z43_A DNA repair and recombin 81.1 1.3 4.4E-05 49.8 5.2 39 537-575 105-148 (324)
317 1nlf_A Regulatory protein REPA 81.1 1.3 4.5E-05 48.4 5.1 27 536-562 27-53 (279)
318 2qmh_A HPR kinase/phosphorylas 80.9 0.75 2.6E-05 48.0 2.8 23 538-560 33-55 (205)
319 1knq_A Gluconate kinase; ALFA/ 80.7 0.8 2.7E-05 46.0 3.0 24 538-561 7-30 (175)
320 3c8u_A Fructokinase; YP_612366 80.6 0.77 2.6E-05 47.9 2.9 23 538-560 21-43 (208)
321 2bwj_A Adenylate kinase 5; pho 80.6 1.4 4.8E-05 45.0 4.9 27 536-562 9-35 (199)
322 2bdt_A BH3686; alpha-beta prot 80.4 0.73 2.5E-05 47.0 2.6 22 539-560 2-23 (189)
323 2ze6_A Isopentenyl transferase 80.3 1 3.5E-05 48.8 3.8 20 541-560 3-22 (253)
324 1tev_A UMP-CMP kinase; ploop, 80.1 1 3.5E-05 45.8 3.6 24 539-562 3-26 (196)
325 1ly1_A Polynucleotide kinase; 80.1 0.95 3.2E-05 45.4 3.3 22 540-561 3-24 (181)
326 3iij_A Coilin-interacting nucl 79.9 1.2 4E-05 45.1 3.9 26 537-562 9-34 (180)
327 1ex7_A Guanylate kinase; subst 79.8 1.1 3.7E-05 46.3 3.6 23 540-562 2-24 (186)
328 1htw_A HI0065; nucleotide-bind 79.8 1.4 4.6E-05 44.2 4.3 26 537-562 31-56 (158)
329 3bh0_A DNAB-like replicative h 79.7 1.3 4.4E-05 49.6 4.5 39 536-575 65-103 (315)
330 3thx_A DNA mismatch repair pro 79.6 6.9 0.00024 50.2 11.7 22 538-559 661-682 (934)
331 1v5w_A DMC1, meiotic recombina 79.1 1.2 4.2E-05 50.4 4.2 39 537-575 120-163 (343)
332 1zuh_A Shikimate kinase; alpha 79.0 1.3 4.5E-05 44.1 3.9 25 539-563 7-31 (168)
333 3asz_A Uridine kinase; cytidin 79.0 0.98 3.4E-05 46.9 3.1 25 537-561 4-28 (211)
334 3uie_A Adenylyl-sulfate kinase 79.0 1 3.4E-05 46.6 3.1 25 537-561 23-47 (200)
335 3foz_A TRNA delta(2)-isopenten 78.9 0.97 3.3E-05 50.4 3.1 22 540-561 11-32 (316)
336 2pcj_A ABC transporter, lipopr 78.9 0.68 2.3E-05 49.2 1.8 24 536-559 27-50 (224)
337 2rhm_A Putative kinase; P-loop 78.8 1.2 4.1E-05 45.3 3.6 24 539-562 5-28 (193)
338 2v54_A DTMP kinase, thymidylat 78.7 1.2 4.1E-05 45.8 3.6 24 538-561 3-26 (204)
339 1y63_A LMAJ004144AAA protein; 78.5 1.2 4.2E-05 45.3 3.6 24 538-561 9-32 (184)
340 2cbz_A Multidrug resistance-as 78.2 0.79 2.7E-05 49.2 2.1 25 536-560 28-52 (237)
341 1nn5_A Similar to deoxythymidy 78.1 2.3 7.7E-05 44.0 5.6 25 538-562 8-32 (215)
342 3tlx_A Adenylate kinase 2; str 77.9 1.3 4.6E-05 47.4 3.8 26 538-563 28-53 (243)
343 3fb4_A Adenylate kinase; psych 77.9 1.4 4.7E-05 45.9 3.8 23 541-563 2-24 (216)
344 3gfo_A Cobalt import ATP-bindi 77.8 0.79 2.7E-05 50.4 1.9 58 620-679 145-205 (275)
345 1tue_A Replication protein E1; 77.7 4.4 0.00015 42.5 7.4 20 540-559 59-78 (212)
346 4eaq_A DTMP kinase, thymidylat 77.7 1.8 6E-05 46.1 4.6 35 538-574 25-59 (229)
347 1ye8_A Protein THEP1, hypothet 77.7 1.3 4.4E-05 45.2 3.4 22 541-562 2-23 (178)
348 1b0u_A Histidine permease; ABC 77.6 0.79 2.7E-05 50.0 1.9 24 536-559 29-52 (262)
349 1g6h_A High-affinity branched- 77.6 0.78 2.7E-05 49.8 1.9 25 536-560 30-54 (257)
350 3thx_B DNA mismatch repair pro 77.5 6.5 0.00022 50.4 10.4 52 634-687 750-805 (918)
351 2zr9_A Protein RECA, recombina 77.4 1.7 5.8E-05 49.5 4.7 37 537-574 59-95 (349)
352 2plr_A DTMP kinase, probable t 77.4 2.1 7E-05 44.2 5.0 26 538-563 3-28 (213)
353 3tqc_A Pantothenate kinase; bi 77.2 3.1 0.00011 46.7 6.7 20 541-560 94-113 (321)
354 1ji0_A ABC transporter; ATP bi 77.2 0.82 2.8E-05 49.1 1.9 25 536-560 29-53 (240)
355 3t61_A Gluconokinase; PSI-biol 77.1 1.2 4.2E-05 45.9 3.1 23 540-562 19-41 (202)
356 1cke_A CK, MSSA, protein (cyti 77.1 1.4 4.7E-05 46.3 3.5 24 539-562 5-28 (227)
357 2i3b_A HCR-ntpase, human cance 76.8 1.3 4.6E-05 45.7 3.3 24 539-562 1-24 (189)
358 1zak_A Adenylate kinase; ATP:A 76.8 1.4 4.8E-05 46.2 3.5 25 539-563 5-29 (222)
359 2ff7_A Alpha-hemolysin translo 76.8 0.9 3.1E-05 49.1 2.0 24 536-559 32-55 (247)
360 1pzn_A RAD51, DNA repair and r 76.8 1.4 4.7E-05 50.2 3.6 27 537-563 129-155 (349)
361 3nh6_A ATP-binding cassette SU 76.7 0.73 2.5E-05 51.5 1.3 25 536-560 77-101 (306)
362 1aky_A Adenylate kinase; ATP:A 76.7 1.7 5.8E-05 45.5 4.2 25 539-563 4-28 (220)
363 2bbw_A Adenylate kinase 4, AK4 76.5 1.5 5E-05 47.0 3.6 26 538-563 26-51 (246)
364 2qt1_A Nicotinamide riboside k 76.5 1 3.5E-05 46.7 2.3 24 536-559 18-41 (207)
365 1gvn_B Zeta; postsegregational 76.4 2 6.9E-05 47.4 4.8 24 539-562 33-56 (287)
366 2pez_A Bifunctional 3'-phospho 76.4 1.3 4.6E-05 44.7 3.1 23 538-560 4-26 (179)
367 2olj_A Amino acid ABC transpor 76.4 0.9 3.1E-05 49.6 1.9 25 536-560 47-71 (263)
368 2zu0_C Probable ATP-dependent 76.3 1.1 3.7E-05 49.0 2.6 25 536-560 43-67 (267)
369 1vpl_A ABC transporter, ATP-bi 76.3 0.91 3.1E-05 49.4 1.9 25 536-560 38-62 (256)
370 3dl0_A Adenylate kinase; phosp 76.3 1.5 5.2E-05 45.7 3.6 22 541-562 2-23 (216)
371 1nij_A Hypothetical protein YJ 76.3 1.4 4.8E-05 49.4 3.5 34 540-576 5-38 (318)
372 2d2e_A SUFC protein; ABC-ATPas 76.2 1.1 3.8E-05 48.4 2.5 25 536-560 26-50 (250)
373 1sgw_A Putative ABC transporte 76.2 0.88 3E-05 48.1 1.7 58 619-678 134-193 (214)
374 2pze_A Cystic fibrosis transme 76.2 0.95 3.3E-05 48.2 2.0 25 536-560 31-55 (229)
375 1nks_A Adenylate kinase; therm 76.1 1.4 4.8E-05 44.6 3.2 22 541-562 3-24 (194)
376 4g1u_C Hemin import ATP-bindin 76.1 0.95 3.3E-05 49.5 2.0 25 536-560 34-58 (266)
377 1ofh_A ATP-dependent HSL prote 76.1 2.4 8.2E-05 46.5 5.3 24 538-561 49-72 (310)
378 2jaq_A Deoxyguanosine kinase; 76.0 1.5 5.1E-05 44.9 3.4 22 541-562 2-23 (205)
379 2ghi_A Transport protein; mult 76.0 0.99 3.4E-05 49.2 2.1 25 536-560 43-67 (260)
380 2yvu_A Probable adenylyl-sulfa 75.9 2.3 7.7E-05 43.2 4.7 36 538-574 12-47 (186)
381 1tf7_A KAIC; homohexamer, hexa 75.8 1.6 5.3E-05 52.7 3.9 38 536-573 36-74 (525)
382 2wwf_A Thymidilate kinase, put 75.7 2.8 9.7E-05 43.2 5.5 25 538-562 9-33 (212)
383 1rz3_A Hypothetical protein rb 75.7 2 6.9E-05 44.4 4.3 23 538-560 21-43 (201)
384 3cmu_A Protein RECA, recombina 75.7 2.1 7E-05 59.0 5.4 92 536-646 1078-1169(2050)
385 2cdn_A Adenylate kinase; phosp 75.7 1.9 6.6E-05 44.4 4.1 25 539-563 20-44 (201)
386 2f1r_A Molybdopterin-guanine d 75.6 1 3.4E-05 45.8 1.9 23 540-562 3-25 (171)
387 2yz2_A Putative ABC transporte 75.4 0.99 3.4E-05 49.3 1.9 24 536-559 30-53 (266)
388 1qf9_A UMP/CMP kinase, protein 75.2 1.8 6.2E-05 43.8 3.8 23 540-562 7-29 (194)
389 3bgw_A DNAB-like replicative h 75.1 1.9 6.5E-05 50.8 4.4 40 535-575 193-232 (444)
390 2nq2_C Hypothetical ABC transp 75.1 1 3.4E-05 48.9 1.8 25 536-560 28-52 (253)
391 2r44_A Uncharacterized protein 75.1 1.9 6.5E-05 48.3 4.2 32 530-561 37-68 (331)
392 3crm_A TRNA delta(2)-isopenten 75.1 1.6 5.6E-05 48.9 3.6 21 540-560 6-26 (323)
393 3kta_A Chromosome segregation 75.1 1.7 5.7E-05 44.0 3.4 22 540-561 27-48 (182)
394 1mv5_A LMRA, multidrug resista 75.0 0.94 3.2E-05 48.8 1.5 25 536-560 25-49 (243)
395 3d3q_A TRNA delta(2)-isopenten 74.7 1.6 5.3E-05 49.5 3.3 21 540-560 8-28 (340)
396 1gm5_A RECG; helicase, replica 74.7 3.6 0.00012 51.9 7.0 78 731-813 417-495 (780)
397 1m7g_A Adenylylsulfate kinase; 74.6 1.8 6.1E-05 45.1 3.6 25 536-560 22-46 (211)
398 1e6c_A Shikimate kinase; phosp 74.3 1.9 6.6E-05 42.9 3.7 23 540-562 3-25 (173)
399 2ixe_A Antigen peptide transpo 74.3 1.2 4E-05 48.9 2.1 25 536-560 42-66 (271)
400 1xjc_A MOBB protein homolog; s 74.2 2.7 9.2E-05 42.6 4.6 23 540-562 5-27 (169)
401 1gtv_A TMK, thymidylate kinase 74.2 1.1 3.7E-05 46.5 1.8 22 541-562 2-23 (214)
402 1e4v_A Adenylate kinase; trans 74.0 2 6.8E-05 44.8 3.8 23 541-563 2-24 (214)
403 1ukz_A Uridylate kinase; trans 73.9 1.9 6.5E-05 44.4 3.6 23 540-562 16-38 (203)
404 3io5_A Recombination and repai 73.9 2.3 7.9E-05 47.6 4.4 37 539-576 29-66 (333)
405 2iyv_A Shikimate kinase, SK; t 73.9 2 6.9E-05 43.4 3.7 24 540-563 3-26 (184)
406 3be4_A Adenylate kinase; malar 73.8 2.3 7.7E-05 44.6 4.2 25 539-563 5-29 (217)
407 1u94_A RECA protein, recombina 73.6 2.5 8.5E-05 48.2 4.7 38 537-575 61-98 (356)
408 3hws_A ATP-dependent CLP prote 73.6 3 0.0001 47.4 5.5 24 538-561 50-73 (363)
409 2ihy_A ABC transporter, ATP-bi 73.5 1.2 4.1E-05 49.0 2.0 25 536-560 44-68 (279)
410 2vp4_A Deoxynucleoside kinase; 73.5 1.4 4.8E-05 46.7 2.4 23 537-559 18-40 (230)
411 2ius_A DNA translocase FTSK; n 73.4 2.8 9.6E-05 50.1 5.2 26 537-562 165-190 (512)
412 3nwj_A ATSK2; P loop, shikimat 73.3 2.3 7.9E-05 45.9 4.2 26 538-563 47-72 (250)
413 2qi9_C Vitamin B12 import ATP- 73.2 1.3 4.3E-05 48.0 2.0 25 536-560 23-47 (249)
414 1ak2_A Adenylate kinase isoenz 73.1 2.4 8.1E-05 45.0 4.1 26 538-563 15-40 (233)
415 1q57_A DNA primase/helicase; d 73.1 1.8 6.3E-05 51.7 3.6 57 531-588 234-290 (503)
416 2z0h_A DTMP kinase, thymidylat 73.0 1.9 6.6E-05 43.9 3.3 21 541-561 2-22 (197)
417 4edh_A DTMP kinase, thymidylat 73.0 3.4 0.00012 43.4 5.3 25 537-561 4-28 (213)
418 2jeo_A Uridine-cytidine kinase 72.9 1.6 5.6E-05 46.7 2.8 26 536-561 22-47 (245)
419 1in4_A RUVB, holliday junction 72.8 2.6 8.9E-05 47.4 4.6 23 540-562 52-74 (334)
420 1via_A Shikimate kinase; struc 72.7 2.2 7.7E-05 42.8 3.7 22 541-562 6-27 (175)
421 2i1q_A DNA repair and recombin 72.6 2.5 8.4E-05 47.3 4.4 27 537-563 96-122 (322)
422 1ewq_A DNA mismatch repair pro 72.6 5 0.00017 50.4 7.5 23 539-561 576-598 (765)
423 4e22_A Cytidylate kinase; P-lo 72.6 2.3 7.9E-05 45.8 4.0 26 537-562 25-50 (252)
424 4tmk_A Protein (thymidylate ki 72.4 3.2 0.00011 43.6 4.9 23 538-560 2-24 (213)
425 1f2t_A RAD50 ABC-ATPase; DNA d 72.3 2.2 7.6E-05 42.1 3.5 20 540-559 24-43 (149)
426 2pbr_A DTMP kinase, thymidylat 72.3 2.1 7.3E-05 43.3 3.5 21 541-561 2-22 (195)
427 1w36_B RECB, exodeoxyribonucle 72.3 3.3 0.00011 54.9 6.1 54 538-592 16-80 (1180)
428 3nbx_X ATPase RAVA; AAA+ ATPas 72.3 2.6 8.8E-05 50.4 4.6 30 530-559 32-61 (500)
429 3fvq_A Fe(3+) IONS import ATP- 72.1 1.6 5.3E-05 49.9 2.5 58 619-678 139-199 (359)
430 2xb4_A Adenylate kinase; ATP-b 72.1 2.3 8E-05 44.7 3.8 23 541-563 2-24 (223)
431 2vli_A Antibiotic resistance p 72.0 1.6 5.4E-05 44.0 2.4 25 538-562 4-28 (183)
432 1lv7_A FTSH; alpha/beta domain 71.7 3.4 0.00012 44.2 5.1 24 539-562 45-68 (257)
433 2pt5_A Shikimate kinase, SK; a 71.6 2.6 8.8E-05 41.8 3.8 23 541-563 2-24 (168)
434 3eph_A TRNA isopentenyltransfe 71.3 2 6.9E-05 49.6 3.2 21 540-560 3-23 (409)
435 3rlf_A Maltose/maltodextrin im 70.9 1.7 6E-05 49.9 2.6 58 619-678 134-194 (381)
436 3cmw_A Protein RECA, recombina 70.8 2.9 9.8E-05 56.8 4.9 56 538-598 1430-1485(1706)
437 2o8b_B DNA mismatch repair pro 70.7 8.2 0.00028 50.1 9.1 21 539-559 789-809 (1022)
438 2bbs_A Cystic fibrosis transme 70.7 1.5 5.3E-05 48.5 2.0 25 536-560 61-85 (290)
439 3gd7_A Fusion complex of cysti 70.6 1.8 6E-05 50.1 2.5 25 536-560 44-68 (390)
440 2if2_A Dephospho-COA kinase; a 70.4 2.4 8.3E-05 43.6 3.4 20 541-560 3-22 (204)
441 1jjv_A Dephospho-COA kinase; P 70.4 2.4 8.1E-05 43.8 3.3 19 541-559 4-22 (206)
442 3uk6_A RUVB-like 2; hexameric 70.3 3.7 0.00013 46.4 5.2 24 540-563 71-94 (368)
443 3aez_A Pantothenate kinase; tr 70.2 2.2 7.4E-05 47.8 3.1 25 536-560 87-111 (312)
444 1z47_A CYSA, putative ABC-tran 70.2 1.8 6.3E-05 49.3 2.5 58 619-678 146-206 (355)
445 1np6_A Molybdopterin-guanine d 70.0 2.6 9E-05 42.9 3.4 23 540-562 7-29 (174)
446 3cmw_A Protein RECA, recombina 69.6 4.7 0.00016 54.7 6.6 90 538-646 1081-1170(1706)
447 2yyz_A Sugar ABC transporter, 69.5 2 6.7E-05 49.1 2.6 58 619-678 134-194 (359)
448 2k5n_A Putative cold-shock pro 69.2 23 0.00079 30.6 8.7 61 227-296 3-66 (74)
449 3a4m_A L-seryl-tRNA(SEC) kinas 69.2 2.4 8.2E-05 45.9 3.1 22 539-560 4-25 (260)
450 2onk_A Molybdate/tungstate ABC 69.0 2 6.8E-05 46.1 2.4 23 537-560 23-45 (240)
451 2it1_A 362AA long hypothetical 68.9 2 7E-05 49.0 2.6 58 619-678 134-194 (362)
452 2oxc_A Probable ATP-dependent 68.4 27 0.00091 36.4 11.1 76 729-813 90-171 (230)
453 1uf9_A TT1252 protein; P-loop, 68.3 2.7 9.4E-05 42.9 3.2 21 540-560 9-29 (203)
454 2r2a_A Uncharacterized protein 68.3 3.7 0.00013 42.7 4.2 23 541-563 7-29 (199)
455 1ixz_A ATP-dependent metallopr 68.0 2.6 8.8E-05 45.1 3.1 23 540-562 50-72 (254)
456 1g29_1 MALK, maltose transport 67.9 2.2 7.4E-05 49.0 2.5 58 619-678 140-200 (372)
457 3hgt_A HDA1 complex subunit 3; 67.7 17 0.00059 40.6 9.6 109 729-868 123-241 (328)
458 1v43_A Sugar-binding transport 67.7 2.2 7.6E-05 48.9 2.6 24 537-560 35-58 (372)
459 3lv8_A DTMP kinase, thymidylat 67.7 5.6 0.00019 42.5 5.6 26 537-562 25-50 (236)
460 3qf7_A RAD50; ABC-ATPase, ATPa 67.5 2.9 9.8E-05 47.9 3.5 20 541-560 25-44 (365)
461 2iut_A DNA translocase FTSK; n 67.4 4.7 0.00016 48.7 5.4 41 538-578 213-256 (574)
462 3tui_C Methionine import ATP-b 67.3 2.3 7.9E-05 48.6 2.6 57 620-678 165-224 (366)
463 3d31_A Sulfate/molybdate ABC t 67.2 1.9 6.3E-05 49.1 1.8 58 619-678 128-188 (348)
464 2pjz_A Hypothetical protein ST 66.8 2.7 9.4E-05 45.7 3.0 24 536-560 28-51 (263)
465 1vht_A Dephospho-COA kinase; s 66.6 3 0.0001 43.5 3.1 21 539-559 4-24 (218)
466 1odf_A YGR205W, hypothetical 3 66.5 2.9 9.8E-05 46.2 3.1 21 539-559 31-51 (290)
467 3h8z_A FragIle X mental retard 66.3 14 0.00047 35.6 7.3 58 223-280 14-71 (128)
468 2p5t_B PEZT; postsegregational 66.3 2.3 7.8E-05 45.8 2.2 25 538-562 31-55 (253)
469 1sq5_A Pantothenate kinase; P- 65.7 3 0.0001 46.4 3.1 25 537-561 78-102 (308)
470 1tq4_A IIGP1, interferon-induc 65.7 4.9 0.00017 46.7 4.9 32 529-560 59-90 (413)
471 1tf7_A KAIC; homohexamer, hexa 65.3 3.5 0.00012 49.5 3.8 38 536-574 278-315 (525)
472 2vhj_A Ntpase P4, P4; non- hyd 65.2 3.4 0.00012 46.3 3.4 26 537-562 121-146 (331)
473 3tmk_A Thymidylate kinase; pho 64.4 4 0.00014 43.1 3.6 25 538-562 4-28 (216)
474 1oxx_K GLCV, glucose, ABC tran 64.4 1.9 6.4E-05 49.2 1.1 59 619-678 141-201 (353)
475 1iy2_A ATP-dependent metallopr 64.0 3.4 0.00012 45.0 3.1 23 540-562 74-96 (278)
476 1pui_A ENGB, probable GTP-bind 64.0 2.8 9.7E-05 43.0 2.3 23 537-559 24-46 (210)
477 3r20_A Cytidylate kinase; stru 63.8 4.8 0.00017 43.0 4.1 25 538-562 8-32 (233)
478 2yv5_A YJEQ protein; hydrolase 63.7 5.2 0.00018 44.3 4.6 25 536-560 162-186 (302)
479 1svm_A Large T antigen; AAA+ f 63.7 3.3 0.00011 47.6 3.0 25 537-561 167-191 (377)
480 1c9k_A COBU, adenosylcobinamid 63.6 2.3 7.8E-05 43.6 1.5 44 542-590 2-45 (180)
481 3v9p_A DTMP kinase, thymidylat 63.6 5.2 0.00018 42.5 4.3 25 537-561 23-47 (227)
482 2qm8_A GTPase/ATPase; G protei 63.4 4.7 0.00016 45.5 4.2 37 537-574 53-89 (337)
483 2rcn_A Probable GTPase ENGC; Y 63.4 5 0.00017 45.7 4.4 25 536-560 212-236 (358)
484 3qks_A DNA double-strand break 63.4 4.2 0.00014 42.3 3.5 21 539-559 23-43 (203)
485 3pxg_A Negative regulator of g 63.3 5.1 0.00017 47.4 4.6 29 532-560 192-222 (468)
486 3sop_A Neuronal-specific septi 63.2 3.8 0.00013 44.7 3.2 22 541-562 4-25 (270)
487 1ltq_A Polynucleotide kinase; 62.9 3.8 0.00013 45.0 3.3 22 540-561 3-24 (301)
488 4a82_A Cystic fibrosis transme 62.8 2.5 8.7E-05 51.4 1.9 23 537-559 365-387 (578)
489 2npi_A Protein CLP1; CLP1-PCF1 62.6 3.2 0.00011 49.0 2.7 25 536-560 135-159 (460)
490 4hlc_A DTMP kinase, thymidylat 62.5 6.4 0.00022 41.0 4.7 37 539-577 2-39 (205)
491 1vec_A ATP-dependent RNA helic 62.4 58 0.002 32.8 12.1 76 730-813 70-151 (206)
492 2x8a_A Nuclear valosin-contain 61.9 4.4 0.00015 44.3 3.4 23 540-562 45-67 (274)
493 1wfq_A UNR protein; beta-barre 61.8 64 0.0022 28.8 10.4 68 221-295 13-83 (89)
494 2eyq_A TRCF, transcription-rep 61.5 13 0.00045 49.0 8.5 79 730-813 651-730 (1151)
495 1yrb_A ATP(GTP)binding protein 61.4 6.9 0.00024 41.8 4.9 33 540-574 15-47 (262)
496 2grj_A Dephospho-COA kinase; T 61.3 4.6 0.00016 41.7 3.3 23 539-561 12-34 (192)
497 2ce2_X GTPase HRAS; signaling 61.3 4.7 0.00016 39.0 3.3 22 541-562 5-26 (166)
498 3auy_A DNA double-strand break 61.2 4.1 0.00014 46.6 3.2 22 539-560 25-46 (371)
499 2c9o_A RUVB-like 1; hexameric 61.0 7 0.00024 45.9 5.3 24 539-562 63-86 (456)
500 2dyk_A GTP-binding protein; GT 61.0 4.8 0.00017 38.9 3.3 20 541-560 3-22 (161)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=6e-110 Score=1055.68 Aligned_cols=658 Identities=50% Similarity=0.876 Sum_probs=602.4
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccC--CCEEEEeccHHHHHHHHHHHHHHH
Q 001046 514 LSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTT--RGKIGCTQPRRVAAMSVAKRVAEE 591 (1176)
Q Consensus 514 ~~l~~~r~~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~--~~~Ilv~~PrR~lA~qva~rva~e 591 (1176)
..+..++..+|++.+|..++.++..+++++|+|||||||||+++++++...... +.+|+|++|+|+||.|++++++.+
T Consensus 84 ~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~ 163 (773)
T 2xau_A 84 VDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEE 163 (773)
T ss_dssp HHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHH
Confidence 344566779999999999999999999999999999999999999988765543 557999999999999999999999
Q ss_pred hCCccCCeeEEEeecccccCCCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccE
Q 001046 592 FGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRL 671 (1176)
Q Consensus 592 ~g~~~G~~vGy~ir~~~~~~~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kv 671 (1176)
++..+|..+||.++++......+.|+++|+|++++.++.++.+.++++|||||||+|++++|.++++++.+...+++.++
T Consensus 164 ~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~i 243 (773)
T 2xau_A 164 MDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKI 243 (773)
T ss_dssp TTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEE
T ss_pred hCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceE
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEcCCCCHHHHHhhhcCCCeEecCCceeeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHH
Q 001046 672 IVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSL 751 (1176)
Q Consensus 672 IlmSATl~~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L 751 (1176)
|+||||++.+.++.||.+++++.++++.+|++++|...+..+++...+..++.++...++|++||||+|+++|+.++..|
T Consensus 244 Il~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L 323 (773)
T 2xau_A 244 IIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKI 323 (773)
T ss_dssp EEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHH
T ss_pred EEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888999988989999888888999999999999999999999
Q ss_pred HHHHhcc--CCCCCCeEEEEecCCCCHHHHHhhcCCCC-----CCCceEEEEcchhhhccCCCCeeEEEeCCcccceecc
Q 001046 752 YERMKGL--GKNVPELIILPVYSALPSEMQSRIFDPAP-----PGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYN 824 (1176)
Q Consensus 752 ~~~~~~l--~~~~~~~~v~~lhs~l~~~~r~~i~~~f~-----~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd 824 (1176)
.+.+..+ .....++.+.++||+|++++|.++++.|+ +|.++||||||+||+|||||+|++|||+|++|++.||
T Consensus 324 ~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd 403 (773)
T 2xau_A 324 SLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYN 403 (773)
T ss_dssp HHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEE
T ss_pred HHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeec
Confidence 8754332 11235788999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCCCCccccccccCHHHHHHHhcccCCCCCcEEEEecChHHHhhhCCCCCchhhhhcChHHHHHHHHHcCCCccccCCCC
Q 001046 825 PKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGFTTLTMKAMGINDLLSFDFM 904 (1176)
Q Consensus 825 ~~~g~~~l~~~p~S~as~~QR~GRAGR~g~G~c~~L~t~~~~~~~l~~~~~pEI~r~~L~~~~L~lk~~gi~~~~~f~~~ 904 (1176)
+.+|++.|.+.|+|.++|+||+|||||.++|.||+||++.++...|.++..|||++.+|.+++|+++++|+.++..|+|+
T Consensus 404 ~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~ 483 (773)
T 2xau_A 404 PRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFM 483 (773)
T ss_dssp TTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGCCCS
T ss_pred cccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCChhhcccc
Confidence 99999999999999999999999999999999999999999976799999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCccccCCcccHHHHHHhcCCCChHHHHHHHHhhhcCCHHHHHHHHHHhcCCCCCCCchhHHH
Q 001046 905 DPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQA 984 (1176)
Q Consensus 905 ~pP~~~~l~~al~~L~~lgald~~g~lT~lG~~~a~lpl~p~l~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~p~~~~~ 984 (1176)
+||+.+.+..|++.|+.+||||++|+||++|+.|+.||++|++|+||+.|+.++|++++++|||||+++++|++|.++++
T Consensus 484 ~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~ 563 (773)
T 2xau_A 484 DPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKK 563 (773)
T ss_dssp SCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCCcccCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcHHHHHHHHHHHHHhc---cC-CCcccccccchhhhHHHHHHHHHHHHHHHHcCCCccccC----c
Q 001046 985 QADQKRAKFFQPEGDHLTLLAVYEAWKAKN---FS-GPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVMSAG----K 1056 (1176)
Q Consensus 985 ~~~~~~~~~~~~~~D~l~~l~~~~~~~~~~---~~-~~~c~~~~l~~~~l~~~~~~r~ql~~~~~~~~~~~~~~~----~ 1056 (1176)
+++.++..|.++.|||+++||+|++|.... .+ ..||.+|||++++|++|.++|.||..+|.+++++..++. .
T Consensus 564 ~~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~ 643 (773)
T 2xau_A 564 RADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPK 643 (773)
T ss_dssp HHHHHHHTTCCTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSTT
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCchh
Confidence 999999999999999999999999997654 44 679999999999999999999999999999988776543 3
Q ss_pred chHHHHHHhhcccccccceeCCCCC-eeeeecCccEEECCCCcCCCCCCCEEEEEeeccchhhhcceecccCHHHHHhhc
Q 001046 1057 NFTKIRKAITAGFFFHAARKDPQEG-YRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVDLA 1135 (1176)
Q Consensus 1057 ~~~~i~~~l~~g~~~n~a~~~~~~~-y~~~~~~~~v~ihpsS~l~~~~~~~vvy~e~~~t~~~~~~~vt~i~~~wl~~~~ 1135 (1176)
++..|++|||+|||+|+|++.+.++ |.++.+++.|+|||+|+|. ..|+||||+|++.|++.||++||+|+|+||.++|
T Consensus 644 ~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~-~~~~~~v~~e~~~t~~~~~~~~~~i~~~~l~~~~ 722 (773)
T 2xau_A 644 YFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLG-HDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIA 722 (773)
T ss_dssp HHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCC-TTCSEEEEEEEEESSSEEEEEEEECCHHHHHHHC
T ss_pred hHHHHHHHHHHhChHhheeeccCCCcceEeeCCCEEEECCCcccC-CCCCEEEEEEeeccchhheeecccCCHHHHHHHH
Confidence 4688999999999999999987765 9999999999999999994 4699999999999999999999999999999999
Q ss_pred cccccccCccccchHhhhcccccccccccCCCcccccccc
Q 001046 1136 PRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRR 1175 (1176)
Q Consensus 1136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1175 (1176)
|+||...+. .+.+.++++++|+++++..++|+.++.+
T Consensus 723 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (773)
T 2xau_A 723 PAYYDLSNF---QKGDVKLSLERIKEKVDRLNELKQGKNK 759 (773)
T ss_dssp TTTSCGGGC---CSSHHHHHHHHHHHHHHC----------
T ss_pred HHheeeccC---CchhHHHHHHHHHHHhhhhhhccccccc
Confidence 999987663 3334456899999999999999987643
No 2
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-55 Score=489.45 Aligned_cols=251 Identities=66% Similarity=1.134 Sum_probs=232.1
Q ss_pred ccCCC-CCCCCHHHHHHHHHHHHHcCccccCCcccHHHHHHhcCCCChHHHHHHHHhhhcCCHHHHHHHHHHhcCCCCCC
Q 001046 899 LSFDF-MDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFY 977 (1176)
Q Consensus 899 ~~f~~-~~pP~~~~l~~al~~L~~lgald~~g~lT~lG~~~a~lpl~p~l~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~ 977 (1176)
..|+| +|||+.+++..|++.|+.+||||++|+||++|+.|+.||++|++||||+.|..++|++++++||||||++++|+
T Consensus 6 ~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~f~ 85 (270)
T 3i4u_A 6 PEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFY 85 (270)
T ss_dssp --------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCCBC
T ss_pred hccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCcccc
Confidence 45788 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHhccCCCcccccccchhhhHHHHHHHHHHHHHHHHcCCCccccCcc
Q 001046 978 RPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVMSAGKN 1057 (1176)
Q Consensus 978 ~p~~~~~~~~~~~~~~~~~~~D~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~~~~~~~~~~~~~~~ 1057 (1176)
+|.+++++++++|.+|.++.|||+|+||+|++|.+++.+..||.+|||++++|++|.++|+||.++|++.++++.+|+.+
T Consensus 86 ~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~~~~ 165 (270)
T 3i4u_A 86 RPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKS 165 (270)
T ss_dssp CCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTC
T ss_pred CCchhHHHHHHHHHHccCCCChHHHHHHHHHHHHHcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcCCCcch
Confidence 99999999999999999999999999999999998877779999999999999999999999999999999988888889
Q ss_pred hHHHHHHhhcccccccceeCCCCCeeeeecCccEEECCCCcCCCCCCCEEEEEeeccchhhhcceecccCHHHHHhhccc
Q 001046 1058 FTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVDLAPR 1137 (1176)
Q Consensus 1058 ~~~i~~~l~~g~~~n~a~~~~~~~y~~~~~~~~v~ihpsS~l~~~~~~~vvy~e~~~t~~~~~~~vt~i~~~wl~~~~~~ 1137 (1176)
++.|++|||+|||+|||++++.++|+++.+|+.|+|||+|+|++..|+||||+|++.|+|.|||+||+|+|+||.++||+
T Consensus 166 ~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~~~p~wvvy~Elv~Tsk~y~r~vt~I~p~wL~~~ap~ 245 (270)
T 3i4u_A 166 TVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPA 245 (270)
T ss_dssp THHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTTSCCSEEEEEEEEESSSEEEEEEEECCHHHHHHHCTT
T ss_pred HHHHHHHHHHHhHHHHheeCCCCceEEccCCCEEEECchhhhcCCCCCEEEEEehhhhhHhHHHhccccCHHHHHHHhHH
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccccch
Q 001046 1138 FFKVADPTKMSK 1149 (1176)
Q Consensus 1138 ~~~~~~~~~~~~ 1149 (1176)
||+..+....++
T Consensus 246 ~~~~~~~~~~~~ 257 (270)
T 3i4u_A 246 FFKVLEVDLQGD 257 (270)
T ss_dssp TEECC------C
T ss_pred Hhcccccccccc
Confidence 999888765544
No 3
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.1e-55 Score=554.45 Aligned_cols=507 Identities=17% Similarity=0.140 Sum_probs=365.8
Q ss_pred CchHHHHHHHHH-HHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHH--HHhCCccCCee
Q 001046 524 PIYKLKKELIQA-VHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVA--EEFGCRLGEEV 600 (1176)
Q Consensus 524 Pi~~~q~~ii~a-i~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva--~e~g~~~G~~v 600 (1176)
.++++|.++++. +.++++++|+||||||||+++++++++.....+++++|++|+|+||.|+++++. ..+|..+|..+
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~ 109 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTS 109 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 468899999999 789999999999999999999999998765467899999999999999999983 23466666666
Q ss_pred EEEeecccccCCCceEEEeChHHHHHHHhhCCC-CCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCCC
Q 001046 601 GYAIRFEDCTGPDTVIKYMTDGMLLREILIDDN-LSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLD 679 (1176)
Q Consensus 601 Gy~ir~~~~~~~~t~I~~~T~g~Llr~l~~~~~-L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl~ 679 (1176)
|+..+.+... ..++|+|||+|+|++.+..++. +.++++|||||||+.+- +.....+..++...+++++|+||||++
T Consensus 110 G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~--~~~~~~l~~i~~~~~~~~ii~lSATl~ 186 (715)
T 2va8_A 110 GDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLND--PERGPVVESVTIRAKRRNLLALSATIS 186 (715)
T ss_dssp SCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGC--TTTHHHHHHHHHHHHTSEEEEEESCCT
T ss_pred CCCCCchhhc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCC--cccchHHHHHHHhcccCcEEEEcCCCC
Confidence 6655555433 3789999999999999988875 89999999999997431 112233334443334899999999995
Q ss_pred -HHHHHhhhcCCCeEecCCceeeeEEEEecCC--------------Cchh--HHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 001046 680 -AEKFSGYFFNCNIFTIPGRTFPVEILYTKQP--------------ESDY--LDASLITVLQIHLTEPEGDILLFLTGQE 742 (1176)
Q Consensus 680 -~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~--------------~~~~--~~~~l~~v~~i~~~~~~g~iLVFl~~~~ 742 (1176)
.+.++.||+ ++++..+++++|+...+.... ...+ .......+...+ ..++++||||++++
T Consensus 187 n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~ 263 (715)
T 2va8_A 187 NYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL--SKNGQVLVFRNSRK 263 (715)
T ss_dssp THHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHH--TTTCCEEEECSSHH
T ss_pred CHHHHHHHhC-CCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHH--hcCCCEEEEECCHH
Confidence 899999885 778888999998876543211 0000 122333343333 36799999999999
Q ss_pred HHHHHHHHHHHHHhc--cC-----------CCC--------------CCeEEEEecCCCCHHHHHhhcCCCCCCCceEEE
Q 001046 743 EIDFACQSLYERMKG--LG-----------KNV--------------PELIILPVYSALPSEMQSRIFDPAPPGKRKVVV 795 (1176)
Q Consensus 743 ei~~l~~~L~~~~~~--l~-----------~~~--------------~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlV 795 (1176)
+++.++..|.+.+.. +. ... ....+.++||+|+.++|..+++.|+.|.++|||
T Consensus 264 ~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlv 343 (715)
T 2va8_A 264 MAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIV 343 (715)
T ss_dssp HHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEE
T ss_pred HHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 999999999864321 00 000 012488999999999999999999999999999
Q ss_pred EcchhhhccCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC---CcEEEEecChHH-Hhhh--
Q 001046 796 ATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG---PGKCYRLYTESA-YRNE-- 869 (1176)
Q Consensus 796 ATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g---~G~c~~L~t~~~-~~~~-- 869 (1176)
||+++++|||+|++++||+. ...||++++.. ..|.|.++|.||+|||||.| +|.||+||++.. +...
T Consensus 344 aT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~ 416 (715)
T 2va8_A 344 ATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFK 416 (715)
T ss_dssp ECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHH
T ss_pred EChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHH
Confidence 99999999999999999986 45788766553 56999999999999999999 899999998765 2211
Q ss_pred CCCCCchhhhhcChHH------HHHHHHHcCC----Cccc---cCCCCC-CCCHHHHHHHHHHHHHcCccccCC---ccc
Q 001046 870 MSPTSIPEIQRINLGF------TTLTMKAMGI----NDLL---SFDFMD-PPSPQALISAMEQLYSLGALDEEG---LLT 932 (1176)
Q Consensus 870 l~~~~~pEI~r~~L~~------~~L~lk~~gi----~~~~---~f~~~~-pP~~~~l~~al~~L~~lgald~~g---~lT 932 (1176)
-.....||+.+++|.. .+|.+..+|. .++. ...|+. +|+...+..|++.|..+|||+.++ .+|
T Consensus 417 ~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t 496 (715)
T 2va8_A 417 KYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALT 496 (715)
T ss_dssp HTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEEC
T ss_pred HHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEeeC
Confidence 1224678898887765 6677777762 2333 224554 455677999999999999998774 799
Q ss_pred HHHHHHhcCCCChHHHHHHHHhhhc---CCHHHHHHHHHHhc-CCCCCCCchhHHHHHHHHHh---hcC--CCCC-----
Q 001046 933 KLGRKMAEFPLDPPLSKMLLASVDL---GCSDEILTIIAMIQ-TGNIFYRPREKQAQADQKRA---KFF--QPEG----- 998 (1176)
Q Consensus 933 ~lG~~~a~lpl~p~l~k~ll~~~~~---~c~~~~l~i~a~ls-~~~~f~~p~~~~~~~~~~~~---~~~--~~~~----- 998 (1176)
++|+.|+.+|++|.++++++.+... .|..+++.|+|+.+ ..++|++|.++....+.... .+. .+-.
T Consensus 497 ~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~ 576 (715)
T 2va8_A 497 NFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYS 576 (715)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHH
T ss_pred hHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHHHHHHHHHhcchhhcccccccccchh
Confidence 9999999999999999999999987 79999999998876 58899999876544332110 111 1111
Q ss_pred ---cHHHHHHHHHHHHHhccCCCcccccccchhhhHHHHHHHHHHHHH
Q 001046 999 ---DHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSI 1043 (1176)
Q Consensus 999 ---D~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~ 1043 (1176)
.|+-..-+.++|.+...-..+|.++.+....|+.+.+....|...
T Consensus 577 ~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a 624 (715)
T 2va8_A 577 LYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYS 624 (715)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 233334445677654333356776666555555554444444433
No 4
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.2e-53 Score=538.06 Aligned_cols=491 Identities=19% Similarity=0.193 Sum_probs=370.7
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHH--HhCCccCCeeE
Q 001046 524 PIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAE--EFGCRLGEEVG 601 (1176)
Q Consensus 524 Pi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~--e~g~~~G~~vG 601 (1176)
.++++|.++++++.++++++++||||||||+++++++++... .+++++|++|+|+||.|+++++.. .+|..++..+|
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G 103 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTG 103 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECS
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH-hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 467789999999999999999999999999999999998643 467999999999999999999832 23555666666
Q ss_pred EEeecccccCCCceEEEeChHHHHHHHhhCCC-CCCCceEEEcCCCc-----CCCchhHHHHHHHHHHhhCCCccEEEEc
Q 001046 602 YAIRFEDCTGPDTVIKYMTDGMLLREILIDDN-LSQYSVIMLDEAHE-----RTIHTDVLFGLLKQLVKRRPDLRLIVTS 675 (1176)
Q Consensus 602 y~ir~~~~~~~~t~I~~~T~g~Llr~l~~~~~-L~~~s~IIiDEaHe-----R~~~~d~ll~llk~~~~~r~~~kvIlmS 675 (1176)
+..+.+... ..++|+|||||+|.+.+..++. +.++++|||||||+ |+...+.++..++ ..++++++|+||
T Consensus 104 ~~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~---~~~~~~~ii~lS 179 (702)
T 2p6r_A 104 DYESRDEHL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMR---RMNKALRVIGLS 179 (702)
T ss_dssp SCBCCSSCS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHH---HHCTTCEEEEEE
T ss_pred CCCcchhhc-cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHH---hcCcCceEEEEC
Confidence 555544333 4789999999999999888775 89999999999997 5555566555554 356789999999
Q ss_pred CCCC-HHHHHhhhcCCCeEecCCceeeeEEEEecCCCchhHHH---------HHHHHHHHHhcCCCCCEEEEeCCHHHHH
Q 001046 676 ATLD-AEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDA---------SLITVLQIHLTEPEGDILLFLTGQEEID 745 (1176)
Q Consensus 676 ATl~-~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~---------~l~~v~~i~~~~~~g~iLVFl~~~~ei~ 745 (1176)
||++ .+.++.|++ ++++..+++.+|+...+...+...+.+. ....+...+ .+++++||||+++++++
T Consensus 180 ATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~ 256 (702)
T 2p6r_A 180 ATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECV--AENGGVLVFESTRRGAE 256 (702)
T ss_dssp CCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHH--HTTCCEEEECSSHHHHH
T ss_pred CCcCCHHHHHHHhC-CCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHH--hcCCCEEEEcCCHHHHH
Confidence 9996 889999885 7889999999999876654332111110 222233322 35789999999999999
Q ss_pred HHHHHHHHHHhccCCCC----------C-----------CeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhcc
Q 001046 746 FACQSLYERMKGLGKNV----------P-----------ELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASL 804 (1176)
Q Consensus 746 ~l~~~L~~~~~~l~~~~----------~-----------~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GI 804 (1176)
.++..|.+.+....... + ...+.++||+|+.++|..+++.|++|.++|||||+++++||
T Consensus 257 ~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gi 336 (702)
T 2p6r_A 257 KTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGV 336 (702)
T ss_dssp HHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSS
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccC
Confidence 99999987643211000 0 12467899999999999999999999999999999999999
Q ss_pred CCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC---CcEEEEecChHHHhhhC--CCCCchhhh
Q 001046 805 TIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG---PGKCYRLYTESAYRNEM--SPTSIPEIQ 879 (1176)
Q Consensus 805 dIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g---~G~c~~L~t~~~~~~~l--~~~~~pEI~ 879 (1176)
|+|++++||+. ...|| |. ..|.|.++|.||+|||||.| +|.||+|+++..+...+ .....||+.
T Consensus 337 dip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~ 405 (702)
T 2p6r_A 337 NLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERI 405 (702)
T ss_dssp CCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCC
T ss_pred CCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCc
Confidence 99999999986 45677 22 45999999999999999999 89999999988754311 224678888
Q ss_pred hcChHH------HHHHHHHcCCC----cccc---CCCC----CCCCHHHHHHHHHHHHHcCccccC--CcccHHHHHHhc
Q 001046 880 RINLGF------TTLTMKAMGIN----DLLS---FDFM----DPPSPQALISAMEQLYSLGALDEE--GLLTKLGRKMAE 940 (1176)
Q Consensus 880 r~~L~~------~~L~lk~~gi~----~~~~---f~~~----~pP~~~~l~~al~~L~~lgald~~--g~lT~lG~~~a~ 940 (1176)
+++|.. .+|.+..+|.- ++.. ..|+ ++|+.+.+..|++.|..+|+|+.+ +.+|++|+.|+.
T Consensus 406 ~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~ 485 (702)
T 2p6r_A 406 TSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSR 485 (702)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHH
T ss_pred eeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHH
Confidence 887765 56666777631 2222 2343 378899999999999999999987 789999999999
Q ss_pred CCCChHHHHHHHHhhhc--CCHHHHHHHHHHhcC-CCCCCCchhHHHHHHHH-H--hhc-CCC--CC-------cHHHHH
Q 001046 941 FPLDPPLSKMLLASVDL--GCSDEILTIIAMIQT-GNIFYRPREKQAQADQK-R--AKF-FQP--EG-------DHLTLL 1004 (1176)
Q Consensus 941 lpl~p~l~k~ll~~~~~--~c~~~~l~i~a~ls~-~~~f~~p~~~~~~~~~~-~--~~~-~~~--~~-------D~l~~l 1004 (1176)
+|++|.++++++.+... .|..+++.|+|+.+. .++|+++.+ ..-.+.. + ..+ ..+ .. .|+-..
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 564 (702)
T 2p6r_A 486 LYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTA 564 (702)
T ss_dssp TTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCch-HHHHHHHHhccccccCCcchhhhhhhhhhhhHHHH
Confidence 99999999999999998 899999999998775 679999987 3222211 1 122 112 11 344445
Q ss_pred HHHHHHHHhccCCCcccccccchhhhHHHH
Q 001046 1005 AVYEAWKAKNFSGPWCFENFVQSRSLRRAQ 1034 (1176)
Q Consensus 1005 ~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~ 1034 (1176)
-++++|.+...-...|.++.+...-++.+.
T Consensus 565 ~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~ 594 (702)
T 2p6r_A 565 LCLKDWIEEKDEDEICAKYGIAPGDLRRIV 594 (702)
T ss_dssp HHHHHHHTTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHhCCcHHhHHHHH
Confidence 556777654322335555555444444333
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.2e-51 Score=521.13 Aligned_cols=445 Identities=17% Similarity=0.150 Sum_probs=337.1
Q ss_pred CCchHHHHHHHHH-HHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHH--HhCCccCCe
Q 001046 523 LPIYKLKKELIQA-VHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAE--EFGCRLGEE 599 (1176)
Q Consensus 523 LPi~~~q~~ii~a-i~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~--e~g~~~G~~ 599 (1176)
..++++|.+++++ +.++++++++||||||||+++++++++.....+++++|++|+|+||.|+++++.. .+|..++..
T Consensus 22 ~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~ 101 (720)
T 2zj8_A 22 ESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMA 101 (720)
T ss_dssp CBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEE
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEe
Confidence 3678999999998 8999999999999999999999999887654578999999999999999999852 234444333
Q ss_pred eEEEeecccccCCCceEEEeChHHHHHHHhhCCC-CCCCceEEEcCCC-----cCCCchhHHHHHHHHHHhhCCCccEEE
Q 001046 600 VGYAIRFEDCTGPDTVIKYMTDGMLLREILIDDN-LSQYSVIMLDEAH-----ERTIHTDVLFGLLKQLVKRRPDLRLIV 673 (1176)
Q Consensus 600 vGy~ir~~~~~~~~t~I~~~T~g~Llr~l~~~~~-L~~~s~IIiDEaH-----eR~~~~d~ll~llk~~~~~r~~~kvIl 673 (1176)
+| .+.........++|+|+|+++|...+..++. +.++++||||||| +|+...+.++..++ +++++|+
T Consensus 102 ~G-~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~------~~~~ii~ 174 (720)
T 2zj8_A 102 TG-DYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML------GKAQIIG 174 (720)
T ss_dssp CS-CSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB------TTBEEEE
T ss_pred cC-CCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh------cCCeEEE
Confidence 33 1222222334789999999999998888774 8999999999999 45555555554443 3799999
Q ss_pred EcCCC-CHHHHHhhhcCCCeEecCCceeeeEEEEecCCCchh-------HHHHHHHHHHHHhcCCCCCEEEEeCCHHHHH
Q 001046 674 TSATL-DAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDY-------LDASLITVLQIHLTEPEGDILLFLTGQEEID 745 (1176)
Q Consensus 674 mSATl-~~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~-------~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~ 745 (1176)
||||+ +.+.++.|+ +++.+...++++|+...+...+...+ .......+...+ .+++++||||+++++++
T Consensus 175 lSATl~n~~~~~~~l-~~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~ 251 (720)
T 2zj8_A 175 LSATIGNPEELAEWL-NAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI--RKKKGALIFVNMRRKAE 251 (720)
T ss_dssp EECCCSCHHHHHHHT-TEEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHH--HTTCCEEEECSCHHHHH
T ss_pred EcCCcCCHHHHHHHh-CCcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHH--hCCCCEEEEecCHHHHH
Confidence 99999 688999988 46678888888888765433221111 111122222222 35689999999999999
Q ss_pred HHHHHHHHHHhccCC------------CC------------CCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhh
Q 001046 746 FACQSLYERMKGLGK------------NV------------PELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAE 801 (1176)
Q Consensus 746 ~l~~~L~~~~~~l~~------------~~------------~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae 801 (1176)
.++..|.+.+..... .. -...+.++||+|+.++|..+++.|+.|.++|||||++++
T Consensus 252 ~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~ 331 (720)
T 2zj8_A 252 RVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLS 331 (720)
T ss_dssp HHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTG
T ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhh
Confidence 999999876432100 00 012388999999999999999999999999999999999
Q ss_pred hccCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC---CcEEEEecChHHHhh---hCCCCCc
Q 001046 802 ASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG---PGKCYRLYTESAYRN---EMSPTSI 875 (1176)
Q Consensus 802 ~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g---~G~c~~L~t~~~~~~---~l~~~~~ 875 (1176)
+|||+|++++||+.+ ..|| ..| ..|.|.++|.||+|||||.| +|.||.||++..+.. .+....+
T Consensus 332 ~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~ 401 (720)
T 2zj8_A 332 AGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKP 401 (720)
T ss_dssp GGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCC
T ss_pred ccCCCCceEEEEcCC----eeec-CCC-----CccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCC
Confidence 999999999999855 3566 223 24999999999999999998 799999999765321 2333344
Q ss_pred hhhhhc-----ChHHHHHHHHHcCC-------CccccCCCC------CCCCHHHHHHHHHHHHHcCccc-cCC---cccH
Q 001046 876 PEIQRI-----NLGFTTLTMKAMGI-------NDLLSFDFM------DPPSPQALISAMEQLYSLGALD-EEG---LLTK 933 (1176)
Q Consensus 876 pEI~r~-----~L~~~~L~lk~~gi-------~~~~~f~~~------~pP~~~~l~~al~~L~~lgald-~~g---~lT~ 933 (1176)
+++... .|...++.+...|. .++..+.|+ ++|..+.+..|++.|..+|+|+ .++ .+|+
T Consensus 402 ~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~ 481 (720)
T 2zj8_A 402 EKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLS 481 (720)
T ss_dssp CCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEECH
T ss_pred CCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeCh
Confidence 444322 34455566665552 122333443 2334578999999999999998 655 7999
Q ss_pred HHHHHhcCCCChHHHHHHHHhhhc----CCHHHHHHHHHHhcC-CCCCCCchhHHHHHH
Q 001046 934 LGRKMAEFPLDPPLSKMLLASVDL----GCSDEILTIIAMIQT-GNIFYRPREKQAQAD 987 (1176)
Q Consensus 934 lG~~~a~lpl~p~l~k~ll~~~~~----~c~~~~l~i~a~ls~-~~~f~~p~~~~~~~~ 987 (1176)
+|+.|+.+|++|.++++++.++.. .|..+++.|+|+++. .++|++|.++....+
T Consensus 482 lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~ 540 (720)
T 2zj8_A 482 LGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEE 540 (720)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHHHHHHHHH
Confidence 999999999999999999999887 899999999999986 789999987655443
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=9.9e-39 Score=377.49 Aligned_cols=316 Identities=16% Similarity=0.224 Sum_probs=228.5
Q ss_pred HhcCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc--CCCEEEEeccHHHHHHHHHHHHHHHhCCccC
Q 001046 520 RQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT--TRGKIGCTQPRRVAAMSVAKRVAEEFGCRLG 597 (1176)
Q Consensus 520 r~~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~--~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G 597 (1176)
......+++|.+++..+..+++++++||||||||+++.+++++.... .+.+++|++|+++||.|+++.+.. ++...+
T Consensus 58 ~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~ 136 (414)
T 3eiq_A 58 YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMA-LGDYMG 136 (414)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH-HGGGSC
T ss_pred cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHH-HhcccC
Confidence 44567889999999999999999999999999999999999986543 356899999999999999998765 444445
Q ss_pred CeeEEEeeccc-------ccCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCc
Q 001046 598 EEVGYAIRFED-------CTGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDL 669 (1176)
Q Consensus 598 ~~vGy~ir~~~-------~~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~ 669 (1176)
..++..+.... .....+.|+|+|+++|++.+.... .+.++++|||||||+ ....++...+...+....++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~-~~~~~~~~~~~~~~~~~~~~~ 215 (414)
T 3eiq_A 137 ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE-MLSRGFKDQIYDIFQKLNSNT 215 (414)
T ss_dssp CCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH-HHHTTTHHHHHHHHTTSCTTC
T ss_pred ceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH-hhccCcHHHHHHHHHhCCCCC
Confidence 55554433322 122567999999999999988766 578899999999995 222233333333333456789
Q ss_pred cEEEEcCCCCHH--HHHhhhcCCC-eEecCCcee---eeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHH
Q 001046 670 RLIVTSATLDAE--KFSGYFFNCN-IFTIPGRTF---PVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEE 743 (1176)
Q Consensus 670 kvIlmSATl~~~--~~~~~f~~~~-v~~i~gr~~---pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~e 743 (1176)
++|+||||++.. .+...+...+ .+.+..... .+...|......+. .+..+..+......+++||||+++++
T Consensus 216 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~ 292 (414)
T 3eiq_A 216 QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEW---KLDTLCDLYETLTITQAVIFINTRRK 292 (414)
T ss_dssp EEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTT---HHHHHHHHHHSSCCSSCEEECSCHHH
T ss_pred eEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHh---HHHHHHHHHHhCCCCcEEEEeCCHHH
Confidence 999999999743 3333333333 333332221 22333433333322 23344455555677899999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceec
Q 001046 744 IDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVY 823 (1176)
Q Consensus 744 i~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~y 823 (1176)
++.+++.|.+. ++.+..+||+++.++|..+++.|+.|..+|||||+++++|||+|++++||+++.
T Consensus 293 ~~~l~~~l~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~------ 357 (414)
T 3eiq_A 293 VDWLTEKMHAR---------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL------ 357 (414)
T ss_dssp HHHHHHHHHTT---------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSC------
T ss_pred HHHHHHHHHhc---------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCC------
Confidence 99999988652 567889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccccccCHHHHHHHhcccCCCC-CcEEEEecChHHHh
Q 001046 824 NPKQGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESAYR 867 (1176)
Q Consensus 824 d~~~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~~~ 867 (1176)
|.|..+|+||+|||||.| +|.||.||++.+..
T Consensus 358 ------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 390 (414)
T 3eiq_A 358 ------------PTNRENYIHRIGRGGRFGRKGVAINMVTEEDKR 390 (414)
T ss_dssp ------------CSSTHHHHHHSCCC-------CEEEEECSTHHH
T ss_pred ------------CCCHHHhhhhcCcccCCCCCceEEEEEcHHHHH
Confidence 999999999999999998 79999999987654
No 7
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.7e-37 Score=413.62 Aligned_cols=451 Identities=15% Similarity=0.125 Sum_probs=315.5
Q ss_pred chHHHHHHHHHHH-cCCeEEEEcCCCCcHHHHHHHHHHHhccc-CCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEE
Q 001046 525 IYKLKKELIQAVH-DNQVLVVIGETGSGKTTQVTQYLAEAGYT-TRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGY 602 (1176)
Q Consensus 525 i~~~q~~ii~ai~-~~~~vIv~apTGSGKTt~~~~~lle~~~~-~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy 602 (1176)
++++|.++++++. .+++++|+||||||||+++.++++..... .+++++|++|+|+||.|+++.+.+.++..+|..|+.
T Consensus 927 fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ 1006 (1724)
T 4f92_B 927 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1006 (1724)
T ss_dssp CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEE
Confidence 5689999999985 56789999999999999999999886543 356899999999999999999999898888888875
Q ss_pred Eeeccc---ccCCCceEEEeChHHHHHHHhh---CCCCCCCceEEEcCCCc----CCCchhHHHHHHHHHHh-hCCCccE
Q 001046 603 AIRFED---CTGPDTVIKYMTDGMLLREILI---DDNLSQYSVIMLDEAHE----RTIHTDVLFGLLKQLVK-RRPDLRL 671 (1176)
Q Consensus 603 ~ir~~~---~~~~~t~I~~~T~g~Llr~l~~---~~~L~~~s~IIiDEaHe----R~~~~d~ll~llk~~~~-~r~~~kv 671 (1176)
...... .....++|+||||+.+...+.. ...+.++++|||||+|. |+...+.++..++.+.. ..+++|+
T Consensus 1007 ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~ri 1086 (1724)
T 4f92_B 1007 LTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRI 1086 (1724)
T ss_dssp CCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEE
T ss_pred EECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceE
Confidence 433211 1124578999999997555432 22578999999999993 44444455555555544 3468999
Q ss_pred EEEcCCC-CHHHHHhhhcCC--Ce--EecCCceeeeEEEEecCCCchhHHHH---HHH-HHHHHhcCCCCCEEEEeCCHH
Q 001046 672 IVTSATL-DAEKFSGYFFNC--NI--FTIPGRTFPVEILYTKQPESDYLDAS---LIT-VLQIHLTEPEGDILLFLTGQE 742 (1176)
Q Consensus 672 IlmSATl-~~~~~~~~f~~~--~v--~~i~gr~~pv~~~~~~~~~~~~~~~~---l~~-v~~i~~~~~~g~iLVFl~~~~ 742 (1176)
|+||||+ |++.+++|++.. .+ +....|+.|++.+........+.... ... ...+....+.+++||||+++.
T Consensus 1087 I~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~ 1166 (1724)
T 4f92_B 1087 VALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRK 1166 (1724)
T ss_dssp EEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHH
T ss_pred EEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHH
Confidence 9999999 799999999643 23 34445666776655433322221111 111 112223456789999999999
Q ss_pred HHHHHHHHHHHHHhccCCC-----------------C--------CCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEc
Q 001046 743 EIDFACQSLYERMKGLGKN-----------------V--------PELIILPVYSALPSEMQSRIFDPAPPGKRKVVVAT 797 (1176)
Q Consensus 743 ei~~l~~~L~~~~~~l~~~-----------------~--------~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVAT 797 (1176)
.++.++..|...+...... . -...|..+||+|++++|..|++.|+.|.++|||||
T Consensus 1167 ~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT 1246 (1724)
T 4f92_B 1167 QTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVAS 1246 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEE
T ss_pred HHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEC
Confidence 9999998887654321100 0 01247889999999999999999999999999999
Q ss_pred chhhhccCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC---CcEEEEecChHHH--hhhCCC
Q 001046 798 NIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG---PGKCYRLYTESAY--RNEMSP 872 (1176)
Q Consensus 798 niae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g---~G~c~~L~t~~~~--~~~l~~ 872 (1176)
+++++|||+|++.+||.. ...||+.... ..|.+..+|.||+|||||.| .|.|+.++++... ...+..
T Consensus 1247 ~tlA~GVnlPa~~VVI~~----~~~~dg~~~~----~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~ 1318 (1724)
T 4f92_B 1247 RSLCWGMNVAAHLVIIMD----TQYYNGKIHA----YVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLY 1318 (1724)
T ss_dssp GGGSSSCCCCBSEEEEEC----SEEEETTTTE----EEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTT
T ss_pred hHHHcCCCCCccEEEEec----CccccCcccc----cCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhC
Confidence 999999999999999954 3467765432 24899999999999999998 6999999876532 222322
Q ss_pred CCch--hhhhcChHHHHHHHHHcCC-Cc------cccCCC-------------CC--------CCCHHHHHHHHHHHHHc
Q 001046 873 TSIP--EIQRINLGFTTLTMKAMGI-ND------LLSFDF-------------MD--------PPSPQALISAMEQLYSL 922 (1176)
Q Consensus 873 ~~~p--EI~r~~L~~~~L~lk~~gi-~~------~~~f~~-------------~~--------pP~~~~l~~al~~L~~l 922 (1176)
.+.| .-+...+...++...+.|. .+ .+...| +. ....+.+..+++.|...
T Consensus 1319 ~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~ 1398 (1724)
T 4f92_B 1319 EPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQS 1398 (1724)
T ss_dssp SCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHC
Confidence 2222 1112233333443333332 11 111111 11 11235577899999999
Q ss_pred Cccc--cCC--cccHHHHHHhcCCCChHHHHHHHHhhhcCCH-HHHHHHHHHhc-CCCCCCCchhHH
Q 001046 923 GALD--EEG--LLTKLGRKMAEFPLDPPLSKMLLASVDLGCS-DEILTIIAMIQ-TGNIFYRPREKQ 983 (1176)
Q Consensus 923 gald--~~g--~lT~lG~~~a~lpl~p~l~k~ll~~~~~~c~-~~~l~i~a~ls-~~~~f~~p~~~~ 983 (1176)
|+|. +++ ..|++|++|+.++++|..+++++.+..-++. ..+|.+++... ..++..+..+..
T Consensus 1399 ~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~i~~R~~E~~ 1465 (1724)
T 4f92_B 1399 KCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDN 1465 (1724)
T ss_dssp TSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTTCCCCTTHHH
T ss_pred CCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhcCCcccccccccccHHH
Confidence 9995 444 4699999999999999999999988776664 55666666543 245556666543
No 8
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-38 Score=411.13 Aligned_cols=326 Identities=17% Similarity=0.215 Sum_probs=252.0
Q ss_pred hcCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCee
Q 001046 521 QSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEV 600 (1176)
Q Consensus 521 ~~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~v 600 (1176)
..++++++|.++++++..+++++|+||||||||+++.++++... ..+++++|++|+|+||.|+++++.+.++ .|
T Consensus 181 ~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~~-----~V 254 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALSNQKYRELLAEFG-----DV 254 (1108)
T ss_dssp CSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHTS-----SE
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEcCcHHHHHHHHHHHHHHhC-----Cc
Confidence 45678999999999999999999999999999999999988863 5577999999999999999999988876 35
Q ss_pred EEEeecccccCCCceEEEeChHHHHHHHhhCCC-CCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCC-
Q 001046 601 GYAIRFEDCTGPDTVIKYMTDGMLLREILIDDN-LSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATL- 678 (1176)
Q Consensus 601 Gy~ir~~~~~~~~t~I~~~T~g~Llr~l~~~~~-L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl- 678 (1176)
|+ +.++....+.+.|+|||+|+|++++..... +.++++||||||| +.....+...+-..+....+++++|+||||+
T Consensus 255 gl-ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~~~e~ii~~l~~~~qvl~lSATip 332 (1108)
T 3l9o_A 255 GL-MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVRYVFLSATIP 332 (1108)
T ss_dssp EE-ECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHHHHHHHHHHSCTTSEEEEEECSCS
T ss_pred cE-EeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh-hccccchHHHHHHHHHhcCCCceEEEEcCCCC
Confidence 65 444555667899999999999999988774 8899999999999 5554444333333333456789999999999
Q ss_pred CHHHHHhhhc-----CCCeEecCCceeeeEEEEecCCCc----------h-----hH-----------------------
Q 001046 679 DAEKFSGYFF-----NCNIFTIPGRTFPVEILYTKQPES----------D-----YL----------------------- 715 (1176)
Q Consensus 679 ~~~~~~~~f~-----~~~v~~i~gr~~pv~~~~~~~~~~----------~-----~~----------------------- 715 (1176)
+...|+.|+. .+.++....+..|+..++...... . +.
T Consensus 333 n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 412 (1108)
T 3l9o_A 333 NAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKK 412 (1108)
T ss_dssp SCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------
T ss_pred CHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccccccccc
Confidence 5667777764 255677778888887665432110 0 00
Q ss_pred -------------HHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhcc---------------------CCC
Q 001046 716 -------------DASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGL---------------------GKN 761 (1176)
Q Consensus 716 -------------~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l---------------------~~~ 761 (1176)
...+..++..+.....+++||||+++..++.++..|...--.. ...
T Consensus 413 ~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~ 492 (1108)
T 3l9o_A 413 GQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRE 492 (1108)
T ss_dssp ------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTC
T ss_pred ccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhh
Confidence 2233445555556677899999999999999998875421000 000
Q ss_pred CC---------CeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCCccc
Q 001046 762 VP---------ELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSL 832 (1176)
Q Consensus 762 ~~---------~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l 832 (1176)
.+ ...+.++||+|++.+|..+++.|+.|.++|||||+++++|||+|++++||+++. .||+..
T Consensus 493 l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~----~~d~~~----- 563 (1108)
T 3l9o_A 493 LPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR----KWDGQQ----- 563 (1108)
T ss_dssp CHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSE----EESSSC-----
T ss_pred hhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCc----ccCccc-----
Confidence 00 011789999999999999999999999999999999999999999999998766 444432
Q ss_pred cccccCHHHHHHHhcccCCCC---CcEEEEecChH
Q 001046 833 VITPISQASAKQRAGRAGRTG---PGKCYRLYTES 864 (1176)
Q Consensus 833 ~~~p~S~as~~QR~GRAGR~g---~G~c~~L~t~~ 864 (1176)
..|+|.++|+||+|||||.| +|.||.+|++.
T Consensus 564 -~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 564 -FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp -EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred -cccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 34889999999999999999 89999999865
No 9
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.7e-37 Score=414.46 Aligned_cols=450 Identities=18% Similarity=0.185 Sum_probs=309.1
Q ss_pred chHHHHHHHHHH-HcCCeEEEEcCCCCcHHHHHHHHHHHhccc----------CCCEEEEeccHHHHHHHHHHHHHHHhC
Q 001046 525 IYKLKKELIQAV-HDNQVLVVIGETGSGKTTQVTQYLAEAGYT----------TRGKIGCTQPRRVAAMSVAKRVAEEFG 593 (1176)
Q Consensus 525 i~~~q~~ii~ai-~~~~~vIv~apTGSGKTt~~~~~lle~~~~----------~~~~Ilv~~PrR~lA~qva~rva~e~g 593 (1176)
++++|.++++.+ .++++++|+||||||||.++.++++..... .+.+++++.|+|+||.|+.+.+.+.++
T Consensus 80 ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~ 159 (1724)
T 4f92_B 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLA 159 (1724)
T ss_dssp CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHh
Confidence 356688888876 568899999999999999999988875432 245899999999999999999887764
Q ss_pred CccCCeeEEEeeccccc----CCCceEEEeChHHHHHHHhhCC----CCCCCceEEEcCCC----cCCCchhHHHHHHHH
Q 001046 594 CRLGEEVGYAIRFEDCT----GPDTVIKYMTDGMLLREILIDD----NLSQYSVIMLDEAH----ERTIHTDVLFGLLKQ 661 (1176)
Q Consensus 594 ~~~G~~vGy~ir~~~~~----~~~t~I~~~T~g~Llr~l~~~~----~L~~~s~IIiDEaH----eR~~~~d~ll~llk~ 661 (1176)
. +|..|+...+ +... ...++|+||||+.+ +.+.... .+.++++|||||+| +|+...+.++..+.+
T Consensus 160 ~-~gi~V~~~tG-d~~~~~~~~~~~~IlVtTpEkl-d~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~ 236 (1724)
T 4f92_B 160 T-YGITVAELTG-DHQLCKEEISATQIIVCTPEKW-DIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIR 236 (1724)
T ss_dssp T-TTCCEEECCS-SCSSCCTTGGGCSEEEECHHHH-HHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHH
T ss_pred h-CCCEEEEEEC-CCCCCccccCCCCEEEECHHHH-HHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHH
Confidence 3 4555553221 2111 13578999999997 4443322 47899999999999 466555555554444
Q ss_pred HH-hhCCCccEEEEcCCC-CHHHHHhhhcCCC-----eEecCCceeeeEEEEecCCCchhHH--HHHHHHH-H-HHhcCC
Q 001046 662 LV-KRRPDLRLIVTSATL-DAEKFSGYFFNCN-----IFTIPGRTFPVEILYTKQPESDYLD--ASLITVL-Q-IHLTEP 730 (1176)
Q Consensus 662 ~~-~~r~~~kvIlmSATl-~~~~~~~~f~~~~-----v~~i~gr~~pv~~~~~~~~~~~~~~--~~l~~v~-~-i~~~~~ 730 (1176)
.. ...+++|+|+||||+ |.+.+++|+...+ ++....|+.|++.++.......... ..+..++ . +.....
T Consensus 237 ~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 316 (1724)
T 4f92_B 237 NIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAG 316 (1724)
T ss_dssp HHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhc
Confidence 33 356789999999999 6899999987542 3333446666666554333222211 1121111 1 222334
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhccCC--------------------C--------CCCeEEEEecCCCCHHHHHhh
Q 001046 731 EGDILLFLTGQEEIDFACQSLYERMKGLGK--------------------N--------VPELIILPVYSALPSEMQSRI 782 (1176)
Q Consensus 731 ~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~--------------------~--------~~~~~v~~lhs~l~~~~r~~i 782 (1176)
.+++||||+++..++.++..|.+.+..... . .-...|..+||+|+.++|..|
T Consensus 317 ~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~v 396 (1724)
T 4f92_B 317 KNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLV 396 (1724)
T ss_dssp SCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHH
Confidence 679999999999999999999876432110 0 011247889999999999999
Q ss_pred cCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC---CcEEEE
Q 001046 783 FDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG---PGKCYR 859 (1176)
Q Consensus 783 ~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g---~G~c~~ 859 (1176)
++.|+.|.++|||||+++++|||+|++++||. ....||+..|.. .|.|..+|.||+|||||.| .|.+|.
T Consensus 397 E~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~----~~~~~~~~~~~~----~~ls~~~~~Qm~GRAGR~g~d~~G~~ii 468 (1724)
T 4f92_B 397 EDLFADKHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYSPEKGRW----TELGALDILQMLGRAGRPQYDTKGEGIL 468 (1724)
T ss_dssp HHHHHTTCCCEEEECHHHHHHSCCCBSEEEEE----CCEEEETTTTEE----EECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred HHHHHCCCCeEEEEcchhHhhCCCCCceEEEe----CCEEecCcCCCc----ccCCHHHHHHhhhhccCCCCCCccEEEE
Confidence 99999999999999999999999999999993 346899887643 3899999999999999998 799999
Q ss_pred ecChHH---HhhhCCCCCch--hhhhcChHHHHHHHHHcC-CCcc------------------------------ccCCC
Q 001046 860 LYTESA---YRNEMSPTSIP--EIQRINLGFTTLTMKAMG-INDL------------------------------LSFDF 903 (1176)
Q Consensus 860 L~t~~~---~~~~l~~~~~p--EI~r~~L~~~~L~lk~~g-i~~~------------------------------~~f~~ 903 (1176)
+.++.+ |.. +.....| .-+...+...++....+| +.+. ...+.
T Consensus 469 ~~~~~~~~~~~~-ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~ 547 (1724)
T 4f92_B 469 ITSHGELQYYLS-LLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPL 547 (1724)
T ss_dssp EEESTTCCHHHH-HTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTT
T ss_pred EecchhHHHHHH-HHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchH
Confidence 987653 222 2222111 111122222222222221 1110 00011
Q ss_pred CCCCCHHHHHHHHHHHHHcCccc--c-CC--cccHHHHHHhcCCCChHHHHHHHHhhhcCCH-HHHHHHHHHhc-CCCCC
Q 001046 904 MDPPSPQALISAMEQLYSLGALD--E-EG--LLTKLGRKMAEFPLDPPLSKMLLASVDLGCS-DEILTIIAMIQ-TGNIF 976 (1176)
Q Consensus 904 ~~pP~~~~l~~al~~L~~lgald--~-~g--~lT~lG~~~a~lpl~p~l~k~ll~~~~~~c~-~~~l~i~a~ls-~~~~f 976 (1176)
++....+.+..|+..|...|+|. + .| ..|++|+.|+.+.++|..++.+.....-.|. .+++.++|+.+ ..++.
T Consensus 548 l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~ 627 (1724)
T 4f92_B 548 LDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNIT 627 (1724)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCC
Confidence 22222355788999999999994 2 23 5899999999999999999999988766655 45777766554 35666
Q ss_pred CCchhHHHHH
Q 001046 977 YRPREKQAQA 986 (1176)
Q Consensus 977 ~~p~~~~~~~ 986 (1176)
.+..++....
T Consensus 628 ~R~~E~~~l~ 637 (1724)
T 4f92_B 628 VREEEKLELQ 637 (1724)
T ss_dssp CCGGGHHHHH
T ss_pred cCHHHHHHHH
Confidence 6766655433
No 10
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.9e-37 Score=366.94 Aligned_cols=305 Identities=20% Similarity=0.263 Sum_probs=229.8
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc-------CCCEEEEeccHHHHHHHHHHHHHHHhCCccC
Q 001046 525 IYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT-------TRGKIGCTQPRRVAAMSVAKRVAEEFGCRLG 597 (1176)
Q Consensus 525 i~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~-------~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G 597 (1176)
.+++|.++++.+.++++++++||||||||+++.++++..... .+.+++|++|||+||.|+++.+.+. +...+
T Consensus 79 pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~-~~~~~ 157 (434)
T 2db3_A 79 PTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF-AFESY 157 (434)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHH-TTTSS
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHH-hccCC
Confidence 568899999999999999999999999999999888875432 2448999999999999999876554 33333
Q ss_pred CeeEEEeeccc------ccCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHh---hCC
Q 001046 598 EEVGYAIRFED------CTGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK---RRP 667 (1176)
Q Consensus 598 ~~vGy~ir~~~------~~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~---~r~ 667 (1176)
..++....... ....+.+|+++|||+|++.+.... .+.++++||||||| +....++... +..++. .++
T Consensus 158 ~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah-~~~~~gf~~~-~~~i~~~~~~~~ 235 (434)
T 2db3_A 158 LKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD-RMLDMGFSED-MRRIMTHVTMRP 235 (434)
T ss_dssp CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH-HHTSTTTHHH-HHHHHHCTTSCS
T ss_pred cEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh-hhhccCcHHH-HHHHHHhcCCCC
Confidence 33332222211 123568999999999999887654 68999999999999 5554443333 333333 357
Q ss_pred CccEEEEcCCCCH--HHHHhhhcCCCeE-ecCC---ceeeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCH
Q 001046 668 DLRLIVTSATLDA--EKFSGYFFNCNIF-TIPG---RTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQ 741 (1176)
Q Consensus 668 ~~kvIlmSATl~~--~~~~~~f~~~~v~-~i~g---r~~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~ 741 (1176)
+.++|+||||++. ..+...+...+++ .+.. ....+...+......... ..++.+.... .+.+||||+++
T Consensus 236 ~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~----~~l~~~l~~~-~~~~lVF~~t~ 310 (434)
T 2db3_A 236 EHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKR----SKLIEILSEQ-ADGTIVFVETK 310 (434)
T ss_dssp SCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHH----HHHHHHHHHC-CTTEEEECSSH
T ss_pred CceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHH----HHHHHHHHhC-CCCEEEEEeCc
Confidence 8999999999973 4555555444443 2221 122344444333322222 2233332333 34499999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccce
Q 001046 742 EEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQN 821 (1176)
Q Consensus 742 ~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~ 821 (1176)
..++.++..|.+. ++.+..+||++++.+|..+++.|+.|..+|||||+++++|||+|+|++||++++
T Consensus 311 ~~a~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~---- 377 (434)
T 2db3_A 311 RGADFLASFLSEK---------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDM---- 377 (434)
T ss_dssp HHHHHHHHHHHHT---------TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSC----
T ss_pred HHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECC----
Confidence 9999999998762 567899999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCccccccccCHHHHHHHhcccCCCC-CcEEEEecChH
Q 001046 822 VYNPKQGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTES 864 (1176)
Q Consensus 822 ~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~ 864 (1176)
|.+.++|+||+|||||.| .|.|+.+|++.
T Consensus 378 --------------p~~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 378 --------------PSKIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp --------------CSSHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred --------------CCCHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 999999999999999999 89999999854
No 11
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=5.2e-37 Score=362.26 Aligned_cols=318 Identities=15% Similarity=0.167 Sum_probs=235.8
Q ss_pred CchHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHHHHHHHhcccC--CCEEEEeccHHHHHHHHHHHHHHHhCCccCCe
Q 001046 524 PIYKLKKELIQAVHDN--QVLVVIGETGSGKTTQVTQYLAEAGYTT--RGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEE 599 (1176)
Q Consensus 524 Pi~~~q~~ii~ai~~~--~~vIv~apTGSGKTt~~~~~lle~~~~~--~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~ 599 (1176)
..+++|.++++.+..+ ++++++||||||||+++.+++++..... +++++|++|+++||.|+++.+.+......+..
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 126 (412)
T 3fht_A 47 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELK 126 (412)
T ss_dssp SCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCC
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccce
Confidence 4678999999999987 9999999999999999999988865432 34899999999999999998766554434556
Q ss_pred eEEEeecccc---cCCCceEEEeChHHHHHHHhhCC--CCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEE
Q 001046 600 VGYAIRFEDC---TGPDTVIKYMTDGMLLREILIDD--NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVT 674 (1176)
Q Consensus 600 vGy~ir~~~~---~~~~t~I~~~T~g~Llr~l~~~~--~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlm 674 (1176)
+++....... ......|+|+|+++|++.+.... .+.++++|||||||.......+...+........++.++|+|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 206 (412)
T 3fht_A 127 LAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLF 206 (412)
T ss_dssp EEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEE
T ss_pred EEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEE
Confidence 6666554332 23457899999999999986644 568999999999995321122222222222234568899999
Q ss_pred cCCCCHH--HHHhhhcCCC-eEecCCc---eeeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHH
Q 001046 675 SATLDAE--KFSGYFFNCN-IFTIPGR---TFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFAC 748 (1176)
Q Consensus 675 SATl~~~--~~~~~f~~~~-v~~i~gr---~~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~ 748 (1176)
|||++.. .+...+...+ .+.+... ...+...+......+ ..+..+..+......+++||||+++.+++.++
T Consensus 207 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 283 (412)
T 3fht_A 207 SATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD---EKFQALCNLYGAITIAQAMIFCHTRKTASWLA 283 (412)
T ss_dssp ESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHH---HHHHHHHHHHHHHSSSEEEEECSSHHHHHHHH
T ss_pred EeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChH---HHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHH
Confidence 9999743 4444444433 3333322 122334443333322 23333444444456789999999999999999
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCC
Q 001046 749 QSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQG 828 (1176)
Q Consensus 749 ~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g 828 (1176)
..|.+. ++.+..+||+|+.++|..+++.|+.|..+|||||+++++|||+|++++||++++.....+
T Consensus 284 ~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~----- 349 (412)
T 3fht_A 284 AELSKE---------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG----- 349 (412)
T ss_dssp HHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSS-----
T ss_pred HHHHhC---------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCC-----
Confidence 999763 566889999999999999999999999999999999999999999999999998111100
Q ss_pred CccccccccCHHHHHHHhcccCCCC-CcEEEEecChHH
Q 001046 829 LDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESA 865 (1176)
Q Consensus 829 ~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~ 865 (1176)
+.|..+|+||+|||||.| +|.||.|++...
T Consensus 350 -------~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 350 -------NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp -------SBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred -------CcchheeecccCcccCCCCCceEEEEEcChh
Confidence 268899999999999998 699999998654
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.1e-36 Score=356.99 Aligned_cols=319 Identities=17% Similarity=0.204 Sum_probs=236.0
Q ss_pred CCchHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHHHHHHHhccc--CCCEEEEeccHHHHHHHHHHHHHHHhCCccCC
Q 001046 523 LPIYKLKKELIQAVHDN--QVLVVIGETGSGKTTQVTQYLAEAGYT--TRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGE 598 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~--~~vIv~apTGSGKTt~~~~~lle~~~~--~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~ 598 (1176)
...+++|.++++.+..+ +++++++|||||||+++.++++..... .+++++|++|+++|+.|+++.+.+ ++...+.
T Consensus 26 ~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~ 104 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQE-MGKFTKI 104 (395)
T ss_dssp CSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHH-HTTTSCC
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHH-HhcccCe
Confidence 35678999999999988 999999999999999999999886543 345899999999999999998754 4444444
Q ss_pred eeEEEeec--ccccCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEc
Q 001046 599 EVGYAIRF--EDCTGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTS 675 (1176)
Q Consensus 599 ~vGy~ir~--~~~~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmS 675 (1176)
.++..... .........|+|+|++.|+..+.... .+.++++|||||||.......+...+........++.++|+||
T Consensus 105 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 184 (395)
T 3pey_A 105 TSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFS 184 (395)
T ss_dssp CEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEE
T ss_pred eEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEE
Confidence 44433322 22233467899999999999887655 6889999999999953322333333333333345689999999
Q ss_pred CCCCH--HHHHhhhc-CCCeEecCCce---eeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHH
Q 001046 676 ATLDA--EKFSGYFF-NCNIFTIPGRT---FPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQ 749 (1176)
Q Consensus 676 ATl~~--~~~~~~f~-~~~v~~i~gr~---~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~ 749 (1176)
||++. ..+...+. +...+.+.... ..+...+...... ......+..+......+++||||+++..++.++.
T Consensus 185 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~ 261 (395)
T 3pey_A 185 ATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNE---ADKFDVLTELYGLMTIGSSIIFVATKKTANVLYG 261 (395)
T ss_dssp SCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSH---HHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHH
T ss_pred ecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCch---HHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHH
Confidence 99974 34444443 33333333322 2233334332222 2233344444455567899999999999999999
Q ss_pred HHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCC
Q 001046 750 SLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGL 829 (1176)
Q Consensus 750 ~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~ 829 (1176)
.|.+. ++.+..+||+++.++|..+++.|+.|..+|||||+++++|||+|++++||++++..
T Consensus 262 ~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~---------- 322 (395)
T 3pey_A 262 KLKSE---------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPT---------- 322 (395)
T ss_dssp HHHHT---------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCB----------
T ss_pred HHHhc---------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCC----------
Confidence 98763 46688999999999999999999999999999999999999999999999998811
Q ss_pred ccccccccCHHHHHHHhcccCCCC-CcEEEEecChHHH
Q 001046 830 DSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESAY 866 (1176)
Q Consensus 830 ~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~~ 866 (1176)
+...+.|..+|+||+|||||.| +|.||.+++....
T Consensus 323 --~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 358 (395)
T 3pey_A 323 --LANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358 (395)
T ss_dssp --CTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred --CCcCCCCHHHhhHhccccccCCCCceEEEEEechHH
Confidence 1112459999999999999999 6999999986543
No 13
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=4.6e-38 Score=386.02 Aligned_cols=306 Identities=21% Similarity=0.226 Sum_probs=231.8
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCC
Q 001046 515 SIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGC 594 (1176)
Q Consensus 515 ~l~~~r~~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~ 594 (1176)
...+++..+|++.+|++++.++..+++++++||||||||+++++++++. +.+++|++|||+||.|+++++++.++.
T Consensus 208 e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----g~~vLVl~PTReLA~Qia~~l~~~~g~ 283 (666)
T 3o8b_A 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----GYKVLVLNPSVAATLGFGAYMSKAHGI 283 (666)
T ss_dssp HHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----TCCEEEEESCHHHHHHHHHHHHHHHSC
T ss_pred HhhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----CCeEEEEcchHHHHHHHHHHHHHHhCC
Confidence 3456788999999999999999999999999999999999999999874 448999999999999999999999988
Q ss_pred ccCCeeEEEeecccccCCCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEE
Q 001046 595 RLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVT 674 (1176)
Q Consensus 595 ~~G~~vGy~ir~~~~~~~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlm 674 (1176)
.++..+|+.. ...+.+|+|+|+|+|+.. ....+.++++|||||||+++...+..+..+...+.......+++|
T Consensus 284 ~vg~~vG~~~-----~~~~~~IlV~TPGrLl~~--~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~ 356 (666)
T 3o8b_A 284 DPNIRTGVRT-----ITTGAPVTYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLA 356 (666)
T ss_dssp CCEEECSSCE-----ECCCCSEEEEEHHHHHHT--TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEE
T ss_pred CeeEEECcEe-----ccCCCCEEEECcHHHHhC--CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEE
Confidence 8776666533 356789999999998421 122577899999999998877766655555555544444457888
Q ss_pred cCCCCHHHHHhhhcCCCeEecCCceeeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHH
Q 001046 675 SATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYER 754 (1176)
Q Consensus 675 SATl~~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~ 754 (1176)
|||++.. +. ...+ ...++...+.. ...+..... . ......+++||||+++++++.+++.|.+.
T Consensus 357 SAT~~~~-i~---~~~p------~i~~v~~~~~~--~i~~~~~~~----~-l~~~~~~~vLVFv~Tr~~ae~la~~L~~~ 419 (666)
T 3o8b_A 357 TATPPGS-VT---VPHP------NIEEVALSNTG--EIPFYGKAI----P-IEAIRGGRHLIFCHSKKKCDELAAKLSGL 419 (666)
T ss_dssp ESSCTTC-CC---CCCT------TEEEEECBSCS--SEEETTEEE----C-GGGSSSSEEEEECSCHHHHHHHHHHHHTT
T ss_pred CCCCCcc-cc---cCCc------ceEEEeecccc--hhHHHHhhh----h-hhhccCCcEEEEeCCHHHHHHHHHHHHhC
Confidence 9999652 00 0110 11111111100 000000000 0 11235789999999999999999998752
Q ss_pred HhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCccccee----ccCCCCCc
Q 001046 755 MKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNV----YNPKQGLD 830 (1176)
Q Consensus 755 ~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~----yd~~~g~~ 830 (1176)
++.+.++||+|++++ |..+..+||||||++++||||| |++|||+|+.+..+ |||..++.
T Consensus 420 ---------g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 420 ---------GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp ---------TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred ---------CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 577899999999764 3456679999999999999997 99999999988776 66777776
Q ss_pred cccccccCHHHHHHHhcccCCCCCcEEEEecChHHHh
Q 001046 831 SLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYR 867 (1176)
Q Consensus 831 ~l~~~p~S~as~~QR~GRAGR~g~G~c~~L~t~~~~~ 867 (1176)
.+ ..|.|.++|+||+|||||..+|. |.||++.++.
T Consensus 483 ~~-~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 483 TT-TVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERP 517 (666)
T ss_dssp EE-EEECBHHHHHHHHTTBCSSSCEE-EEESCCCCBC
T ss_pred cc-cCcCCHHHHHHHhccCCCCCCCE-EEEEecchhh
Confidence 54 57999999999999999955899 9999987653
No 14
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.9e-37 Score=372.63 Aligned_cols=293 Identities=20% Similarity=0.241 Sum_probs=219.3
Q ss_pred HHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEEEeeccc-ccC
Q 001046 533 IQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFED-CTG 611 (1176)
Q Consensus 533 i~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~-~~~ 611 (1176)
..++.+++++|++||||||||+++.+++++.....+++++|++|||+||.|+++++. |..+++...... ...
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~~t 87 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQREHQ 87 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC--------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc-------CceEeEEecccccCCC
Confidence 445788999999999999999999888887665567789999999999999998774 344554433221 234
Q ss_pred CCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCCCHHHHHhhhcCCC
Q 001046 612 PDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCN 691 (1176)
Q Consensus 612 ~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl~~~~~~~~f~~~~ 691 (1176)
+...+.++|.+.+.+.++.++.+.++++|||||||+++...++.++++..... .++.++|+||||++.....-...+.|
T Consensus 88 ~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~~~~~~~~~~~p 166 (459)
T 2z83_A 88 GNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPGTTDPFPDSNAP 166 (459)
T ss_dssp CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCCCSSCCCSSC
T ss_pred CCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCCcchhhhccCCCC
Confidence 66789999999999999998899999999999999987777777777776553 46899999999997432111111334
Q ss_pred eEecCCceeeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEec
Q 001046 692 IFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVY 771 (1176)
Q Consensus 692 v~~i~gr~~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lh 771 (1176)
+..+. ...+...+.. .+..+ ....+++||||+++++++.+++.|.+. ++.+..+|
T Consensus 167 i~~~~----------~~~~~~~~~~-~~~~l-----~~~~~~~LVF~~s~~~~~~l~~~L~~~---------g~~v~~lh 221 (459)
T 2z83_A 167 IHDLQ----------DEIPDRAWSS-GYEWI-----TEYAGKTVWFVASVKMGNEIAMCLQRA---------GKKVIQLN 221 (459)
T ss_dssp EEEEE----------CCCCSSCCSS-CCHHH-----HHCCSCEEEECSCHHHHHHHHHHHHHT---------TCCEEEES
T ss_pred eEEec----------ccCCcchhHH-HHHHH-----HhcCCCEEEEeCChHHHHHHHHHHHhc---------CCcEEecC
Confidence 33221 1111111100 00111 123789999999999999999998763 56788999
Q ss_pred CCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCCcccc---ccccCHHHHHHHhcc
Q 001046 772 SALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLV---ITPISQASAKQRAGR 848 (1176)
Q Consensus 772 s~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~---~~p~S~as~~QR~GR 848 (1176)
|. +|..+++.|+.|.++|||||+++++|||||+ ++|||+|.++..+|+ ..+...+. ..|.|.++|+||+||
T Consensus 222 ~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~-~~~~~~~~~~~d~p~s~~~~~QR~GR 295 (459)
T 2z83_A 222 RK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTIL-EEGEGRVILGNPSPITSASAAQRRGR 295 (459)
T ss_dssp TT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEE-CSSSCEEEECSCEECCHHHHHHHHTT
T ss_pred HH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccc-cccccccccccCCCCCHHHHHHhccc
Confidence 85 6889999999999999999999999999999 999999988887765 23444443 379999999999999
Q ss_pred cCCCC--CcEEEEecChH
Q 001046 849 AGRTG--PGKCYRLYTES 864 (1176)
Q Consensus 849 AGR~g--~G~c~~L~t~~ 864 (1176)
|||.| +|.||.|++..
T Consensus 296 aGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 296 VGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp SSCCTTCCCEEEEECSCC
T ss_pred cCCCCCCCCeEEEEEccc
Confidence 99998 89999999875
No 15
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=9.1e-38 Score=374.77 Aligned_cols=293 Identities=18% Similarity=0.228 Sum_probs=225.4
Q ss_pred HHHHHHcCC-eEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEEEeeccc-c
Q 001046 532 LIQAVHDNQ-VLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFED-C 609 (1176)
Q Consensus 532 ii~ai~~~~-~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~-~ 609 (1176)
+++.+.+++ +++++||||||||+++.++++......+++++|++|||+||.|+++.+. |..++|...... .
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~ 83 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR-------GLPIRYQTPAVKSD 83 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TSCEEECCTTCSCC
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc-------Cceeeeeecccccc
Confidence 455565555 5599999999999988877776655566799999999999999998752 445666554432 3
Q ss_pred cCCCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCCCHHHHHhhhcC
Q 001046 610 TGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFN 689 (1176)
Q Consensus 610 ~~~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl~~~~~~~~f~~ 689 (1176)
..+++.|.++|+|.|.+.+...+.+.++++|||||||+++...+.++.++... ...++.++|+||||++......++.+
T Consensus 84 ~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~~~~~~i~~SAT~~~~~~~~~~~~ 162 (451)
T 2jlq_A 84 HTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTR-VEMGEAAAIFMTATPPGSTDPFPQSN 162 (451)
T ss_dssp CCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHH-HHTTSCEEEEECSSCTTCCCSSCCCS
T ss_pred CCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHh-hcCCCceEEEEccCCCccchhhhcCC
Confidence 45677899999999999999999999999999999997755555555555332 24568999999999976544444444
Q ss_pred CCeEecCCceeeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEE
Q 001046 690 CNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILP 769 (1176)
Q Consensus 690 ~~v~~i~gr~~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~ 769 (1176)
.+++.+. +.+|.. .|.. .... .....+++||||+++++++.++..|.+. ++.+..
T Consensus 163 ~~~~~~~-~~~p~~---------~~~~-~~~~-----l~~~~~~~lVF~~s~~~a~~l~~~L~~~---------g~~~~~ 217 (451)
T 2jlq_A 163 SPIEDIE-REIPER---------SWNT-GFDW-----ITDYQGKTVWFVPSIKAGNDIANCLRKS---------GKRVIQ 217 (451)
T ss_dssp SCEEEEE-CCCCSS---------CCSS-SCHH-----HHHCCSCEEEECSSHHHHHHHHHHHHTT---------TCCEEE
T ss_pred CceEecC-ccCCch---------hhHH-HHHH-----HHhCCCCEEEEcCCHHHHHHHHHHHHHc---------CCeEEE
Confidence 5544432 222211 1100 0001 1123679999999999999999988652 567889
Q ss_pred ecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCCccccc---cccCHHHHHHHh
Q 001046 770 VYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVI---TPISQASAKQRA 846 (1176)
Q Consensus 770 lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~---~p~S~as~~QR~ 846 (1176)
+||.+. .++++.|++|.++|||||+++++|||||+ ++|||+|+.+...|| ..+...+.. .|.|.++|+||+
T Consensus 218 lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~ 291 (451)
T 2jlq_A 218 LSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAAQRR 291 (451)
T ss_dssp ECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHHHHH
T ss_pred CCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHHHHHHhc
Confidence 999764 57899999999999999999999999999 999999999999998 667777776 899999999999
Q ss_pred cccCCCC--CcEEEEecCh
Q 001046 847 GRAGRTG--PGKCYRLYTE 863 (1176)
Q Consensus 847 GRAGR~g--~G~c~~L~t~ 863 (1176)
|||||.| +|.||.++..
T Consensus 292 GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 292 GRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp TTSSCCTTCCCEEEEECSC
T ss_pred cccCCCCCCCccEEEEeCC
Confidence 9999999 7999988753
No 16
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.2e-35 Score=349.94 Aligned_cols=310 Identities=16% Similarity=0.171 Sum_probs=234.9
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc--CCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeE
Q 001046 524 PIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT--TRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVG 601 (1176)
Q Consensus 524 Pi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~--~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vG 601 (1176)
..+++|.++++.+.+++++++++|||||||+++..+++..... .+.++++++|+++|+.|+++.+.... ...|..++
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~-~~~~~~~~ 121 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLG-KHCGISCM 121 (400)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT-TTTTCCEE
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHh-cccCceEE
Confidence 3789999999999999999999999999999999988876543 34589999999999999999876543 44454454
Q ss_pred EEeeccc------ccCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-hCCCccEEE
Q 001046 602 YAIRFED------CTGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK-RRPDLRLIV 673 (1176)
Q Consensus 602 y~ir~~~------~~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~-~r~~~kvIl 673 (1176)
....... .......|+|+|++.|+..+.... .+.++++|||||||. ....+ +...+..+.. ..+..++++
T Consensus 122 ~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~-~~~~~-~~~~~~~i~~~~~~~~~~i~ 199 (400)
T 1s2m_A 122 VTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADK-MLSRD-FKTIIEQILSFLPPTHQSLL 199 (400)
T ss_dssp EECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHH-HSSHH-HHHHHHHHHTTSCSSCEEEE
T ss_pred EEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchH-hhhhc-hHHHHHHHHHhCCcCceEEE
Confidence 3332221 123567899999999998887654 688999999999993 33333 3344445544 345789999
Q ss_pred EcCCCCHH---HHHhhhcCCCeEecCCce--eeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHH
Q 001046 674 TSATLDAE---KFSGYFFNCNIFTIPGRT--FPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFAC 748 (1176)
Q Consensus 674 mSATl~~~---~~~~~f~~~~v~~i~gr~--~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~ 748 (1176)
||||++.. .+..++.....+.+.... ..+..++........ ...+..+......+++||||+++++++.++
T Consensus 200 lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~ 275 (400)
T 1s2m_A 200 FSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQK----LHCLNTLFSKLQINQAIIFCNSTNRVELLA 275 (400)
T ss_dssp EESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGH----HHHHHHHHHHSCCSEEEEECSSHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhH----HHHHHHHHhhcCCCcEEEEEecHHHHHHHH
Confidence 99999743 333444333223222221 123334433322222 222233333456789999999999999999
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCC
Q 001046 749 QSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQG 828 (1176)
Q Consensus 749 ~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g 828 (1176)
+.|.+. ++.+..+||+++.++|..+++.|+.|..+|||||+++++|||+|++++||++++
T Consensus 276 ~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~----------- 335 (400)
T 1s2m_A 276 KKITDL---------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF----------- 335 (400)
T ss_dssp HHHHHH---------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSC-----------
T ss_pred HHHHhc---------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCC-----------
Confidence 998764 466889999999999999999999999999999999999999999999999998
Q ss_pred CccccccccCHHHHHHHhcccCCCC-CcEEEEecChHHHh
Q 001046 829 LDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESAYR 867 (1176)
Q Consensus 829 ~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~~~ 867 (1176)
|.|..+|+||+|||||.| +|.||.||++.+..
T Consensus 336 -------p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~ 368 (400)
T 1s2m_A 336 -------PKTAETYLHRIGRSGRFGHLGLAINLINWNDRF 368 (400)
T ss_dssp -------CSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHH
T ss_pred -------CCCHHHHHHhcchhcCCCCCceEEEEeccchHH
Confidence 999999999999999998 89999999988754
No 17
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.1e-37 Score=404.11 Aligned_cols=379 Identities=18% Similarity=0.231 Sum_probs=265.1
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEE
Q 001046 523 LPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGY 602 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy 602 (1176)
++++++|.++++++.++++++++||||||||+++..++... ...+++++|++|+++|+.|+++++.+.++ |..+|.
T Consensus 38 f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~-~~~g~~vlvl~PtraLa~Q~~~~l~~~~~---~~~v~~ 113 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMA-HRNMTKTIYTSPIKALSNQKFRDFKETFD---DVNIGL 113 (997)
T ss_dssp SCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH-HHTTCEEEEEESCGGGHHHHHHHHHTTC-----CCEEE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHHHcC---CCeEEE
Confidence 45789999999999999999999999999998766666553 34567899999999999999999887652 334443
Q ss_pred EeecccccCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCC-CH
Q 001046 603 AIRFEDCTGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATL-DA 680 (1176)
Q Consensus 603 ~ir~~~~~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl-~~ 680 (1176)
. ..+......+.|+|+|+++|+..+.... .+.++++||||||| +..+.++...+...+....+++++|+||||+ +.
T Consensus 114 l-~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~ 191 (997)
T 4a4z_A 114 I-TGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNT 191 (997)
T ss_dssp E-CSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTH
T ss_pred E-eCCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc-cccccchHHHHHHHHHhcccCCCEEEEcCCCCCh
Confidence 2 2233455678999999999999887765 58899999999999 4433332222222333456789999999999 68
Q ss_pred HHHHhhhc-----CCCeEecCCceeeeEEEEecCC--------CchhH--------------------------------
Q 001046 681 EKFSGYFF-----NCNIFTIPGRTFPVEILYTKQP--------ESDYL-------------------------------- 715 (1176)
Q Consensus 681 ~~~~~~f~-----~~~v~~i~gr~~pv~~~~~~~~--------~~~~~-------------------------------- 715 (1176)
..|+.|+. .+.++..+++.+|+..++.... ...+.
T Consensus 192 ~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 271 (997)
T 4a4z_A 192 YEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTA 271 (997)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccc
Confidence 89999985 3457788888888886653210 00000
Q ss_pred -------------------------------------------------HHHHHHHHHHHhcCCCCCEEEEeCCHHHHHH
Q 001046 716 -------------------------------------------------DASLITVLQIHLTEPEGDILLFLTGQEEIDF 746 (1176)
Q Consensus 716 -------------------------------------------------~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~ 746 (1176)
...+..++........+++||||+++.+|+.
T Consensus 272 ~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~ 351 (997)
T 4a4z_A 272 RGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEE 351 (997)
T ss_dssp ---------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHH
Confidence 0112344455555667899999999999999
Q ss_pred HHHHHHHH------------------HhccCC---C---------CCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEE
Q 001046 747 ACQSLYER------------------MKGLGK---N---------VPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVA 796 (1176)
Q Consensus 747 l~~~L~~~------------------~~~l~~---~---------~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVA 796 (1176)
++..|... +..+.. . .....+.++||+|++.+|..+++.|..|.++||||
T Consensus 352 la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvA 431 (997)
T 4a4z_A 352 YADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFA 431 (997)
T ss_dssp HHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEE
Confidence 98877431 000000 0 00124789999999999999999999999999999
Q ss_pred cchhhhccCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC---CcEEEEecCh-----HHHhh
Q 001046 797 TNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG---PGKCYRLYTE-----SAYRN 868 (1176)
Q Consensus 797 Tniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g---~G~c~~L~t~-----~~~~~ 868 (1176)
|+++++|||+|++ +||.++..+ ||+.. ..|+|..+|+||+|||||.| .|.||.++.. ..+..
T Consensus 432 T~~~a~GIDiP~~-~VVi~~~~k---~dg~~------~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~ 501 (997)
T 4a4z_A 432 TETFAMGLNLPTR-TVIFSSIRK---HDGNG------LRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKE 501 (997)
T ss_dssp CTHHHHSCCCCCS-EEEESCSEE---EETTE------EEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHH
T ss_pred chHhhCCCCCCCc-eEEEecccc---ccCcc------CCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHH
Confidence 9999999999995 455455533 55432 33899999999999999998 8999999942 12221
Q ss_pred hCCCCCchhhhhc------ChHHHHHHHHHcCCCccccCCCCCCCCHHHHHHHHHHH
Q 001046 869 EMSPTSIPEIQRI------NLGFTTLTMKAMGINDLLSFDFMDPPSPQALISAMEQL 919 (1176)
Q Consensus 869 ~l~~~~~pEI~r~------~L~~~~L~lk~~gi~~~~~f~~~~pP~~~~l~~al~~L 919 (1176)
+. ...|+.+++ ++...+|++..+++.++..+.|.+.+....+......|
T Consensus 502 -~i-~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l 556 (997)
T 4a4z_A 502 -VT-MGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQI 556 (997)
T ss_dssp -HH-HSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred -Hh-cCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 21 123444443 34444455555666667777666655444444333333
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.1e-36 Score=360.24 Aligned_cols=312 Identities=15% Similarity=0.229 Sum_probs=234.3
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcc--cCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeE
Q 001046 524 PIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGY--TTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVG 601 (1176)
Q Consensus 524 Pi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~--~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vG 601 (1176)
..+++|.++++.+.+++++++++|||||||+++..++++... ..+.+++|++|+++||.|+++.+.. ++...+..++
T Consensus 59 ~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~ 137 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLA-LGDYMNVQCH 137 (410)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHH-HhccCCeEEE
Confidence 367899999999999999999999999999999999988643 2356899999999999999998755 4445555555
Q ss_pred EEeecccc------cCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEE
Q 001046 602 YAIRFEDC------TGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVT 674 (1176)
Q Consensus 602 y~ir~~~~------~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlm 674 (1176)
........ ...+..|+++|++.|+..+.... .+.++++|||||||. .....+...+...+....++.++|+|
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~-~~~~~~~~~~~~i~~~~~~~~~~i~~ 216 (410)
T 2j0s_A 138 ACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE-MLNKGFKEQIYDVYRYLPPATQVVLI 216 (410)
T ss_dssp EECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HTSTTTHHHHHHHHTTSCTTCEEEEE
T ss_pred EEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH-HHhhhhHHHHHHHHHhCccCceEEEE
Confidence 44332211 11356899999999999887654 678899999999994 33333332222222234568899999
Q ss_pred cCCCCHH--HHHhhhcCCCeE-ecCCce---eeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHH
Q 001046 675 SATLDAE--KFSGYFFNCNIF-TIPGRT---FPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFAC 748 (1176)
Q Consensus 675 SATl~~~--~~~~~f~~~~v~-~i~gr~---~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~ 748 (1176)
|||++.+ .+...+...|+. .+.... ..+...|......++... .+..+......+++||||++++.++.++
T Consensus 217 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~---~l~~~~~~~~~~~~lVf~~~~~~~~~l~ 293 (410)
T 2j0s_A 217 SATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFD---TLCDLYDTLTITQAVIFCNTKRKVDWLT 293 (410)
T ss_dssp ESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHH---HHHHHHHHHTSSEEEEECSSHHHHHHHH
T ss_pred EcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHH---HHHHHHHhcCCCcEEEEEcCHHHHHHHH
Confidence 9999754 333333344433 222211 123334433333332222 2333333345679999999999999999
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCC
Q 001046 749 QSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQG 828 (1176)
Q Consensus 749 ~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g 828 (1176)
+.|.+. ++.+..+||++++.+|..+++.|+.|..+|||||+++++|||+|++++||++++
T Consensus 294 ~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~----------- 353 (410)
T 2j0s_A 294 EKMREA---------NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDL----------- 353 (410)
T ss_dssp HHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSC-----------
T ss_pred HHHHhC---------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECC-----------
Confidence 988762 567889999999999999999999999999999999999999999999999998
Q ss_pred CccccccccCHHHHHHHhcccCCCC-CcEEEEecChHHHh
Q 001046 829 LDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESAYR 867 (1176)
Q Consensus 829 ~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~~~ 867 (1176)
|.+..+|+||+|||||.| +|.||.++++.+..
T Consensus 354 -------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (410)
T 2j0s_A 354 -------PNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR 386 (410)
T ss_dssp -------CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHH
T ss_pred -------CCCHHHHHHhcccccCCCCceEEEEEecHHHHH
Confidence 999999999999999998 89999999987653
No 19
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.8e-36 Score=353.79 Aligned_cols=311 Identities=20% Similarity=0.202 Sum_probs=228.4
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccC--------------------CCEEEEeccHHHHHH
Q 001046 523 LPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTT--------------------RGKIGCTQPRRVAAM 582 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~--------------------~~~Ilv~~PrR~lA~ 582 (1176)
...+++|.++++++..+++++++||||||||+++.++++...... ..+++|++|+|+||.
T Consensus 36 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 115 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAV 115 (417)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHH
T ss_pred CCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHH
Confidence 356789999999999999999999999999999888887653221 246999999999999
Q ss_pred HHHHHHHHHhCCccCCeeEEEeeccc------ccCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHH
Q 001046 583 SVAKRVAEEFGCRLGEEVGYAIRFED------CTGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVL 655 (1176)
Q Consensus 583 qva~rva~e~g~~~G~~vGy~ir~~~------~~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~l 655 (1176)
|+++++.... ...+..++....... ....++.|+|+|++.|++.+.... .+.++++|||||||. ....++
T Consensus 116 q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~-~~~~~~- 192 (417)
T 2i4i_A 116 QIYEEARKFS-YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADR-MLDMGF- 192 (417)
T ss_dssp HHHHHHHHHH-TTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHH-HHHTTC-
T ss_pred HHHHHHHHHh-CcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhH-hhccCc-
Confidence 9999876644 333334443222211 123467899999999999887765 588999999999994 222221
Q ss_pred HHHHHHHHhh-----CCCccEEEEcCCCCH--HHHHhhhcCCCeEecCCce----eeeEEEEecCCCchhHHHHHHHHHH
Q 001046 656 FGLLKQLVKR-----RPDLRLIVTSATLDA--EKFSGYFFNCNIFTIPGRT----FPVEILYTKQPESDYLDASLITVLQ 724 (1176)
Q Consensus 656 l~llk~~~~~-----r~~~kvIlmSATl~~--~~~~~~f~~~~v~~i~gr~----~pv~~~~~~~~~~~~~~~~l~~v~~ 724 (1176)
...+..+... ....++|+||||++. ..+...+...+++...+.. ..+...+......+.. ..+..
T Consensus 193 ~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~l~~ 268 (417)
T 2i4i_A 193 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKR----SFLLD 268 (417)
T ss_dssp HHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHH----HHHHH
T ss_pred HHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHH----HHHHH
Confidence 2233344331 126789999999964 4455555555543322211 1233333332222222 22222
Q ss_pred HHh-cCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhc
Q 001046 725 IHL-TEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEAS 803 (1176)
Q Consensus 725 i~~-~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~G 803 (1176)
+.. ....+++||||+++++++.++..|.+. ++.+..+||+++.++|..+++.|+.|..+|||||+++++|
T Consensus 269 ~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 339 (417)
T 2i4i_A 269 LLNATGKDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 339 (417)
T ss_dssp HHHTCCTTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTT
T ss_pred HHHhcCCCCeEEEEECCHHHHHHHHHHHHHC---------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcC
Confidence 222 235678999999999999999998762 5678999999999999999999999999999999999999
Q ss_pred cCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC-CcEEEEecChHHHh
Q 001046 804 LTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESAYR 867 (1176)
Q Consensus 804 IdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~~~ 867 (1176)
||+|++++||++++ |.|..+|+||+|||||.| +|.||.||++.+..
T Consensus 340 idip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (417)
T 2i4i_A 340 LDISNVKHVINFDL------------------PSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 386 (417)
T ss_dssp SCCCCEEEEEESSC------------------CSSHHHHHHHHTTBCC--CCEEEEEEECGGGGG
T ss_pred CCcccCCEEEEEcC------------------CCCHHHHHHhcCccccCCCCceEEEEEccccHH
Confidence 99999999999999 999999999999999998 79999999987654
No 20
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.8e-36 Score=373.85 Aligned_cols=309 Identities=15% Similarity=0.127 Sum_probs=226.7
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEEE
Q 001046 524 PIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYA 603 (1176)
Q Consensus 524 Pi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy~ 603 (1176)
..+++|.++++++.+++++++++|||+|||+++.++++.. .+.++|+.|+++|+.|++..+.. +|..++...|..
T Consensus 44 ~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~----~g~~lVisP~~~L~~q~~~~l~~-~gi~~~~l~~~~ 118 (591)
T 2v1x_A 44 KFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS----DGFTLVICPLISLMEDQLMVLKQ-LGISATMLNASS 118 (591)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS----SSEEEEECSCHHHHHHHHHHHHH-HTCCEEECCSSC
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc----CCcEEEEeCHHHHHHHHHHHHHh-cCCcEEEEeCCC
Confidence 4567899999999999999999999999999888777653 57899999999999999998765 344332211111
Q ss_pred eeccc--------ccCCCceEEEeChHHHH------HHHhhCCCCCCCceEEEcCCCcCC-----CchhHHHHHHHHHHh
Q 001046 604 IRFED--------CTGPDTVIKYMTDGMLL------REILIDDNLSQYSVIMLDEAHERT-----IHTDVLFGLLKQLVK 664 (1176)
Q Consensus 604 ir~~~--------~~~~~t~I~~~T~g~Ll------r~l~~~~~L~~~s~IIiDEaHeR~-----~~~d~ll~llk~~~~ 664 (1176)
...+. ......+|+|+||++|. +.+.....+.++++|||||||+.. +..++ ..+..+..
T Consensus 119 ~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~--~~l~~l~~ 196 (591)
T 2v1x_A 119 SKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDY--KALGILKR 196 (591)
T ss_dssp CHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGG--GGGGHHHH
T ss_pred CHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHH--HHHHHHHH
Confidence 10000 02457899999999874 233332357789999999999632 22332 12334445
Q ss_pred hCCCccEEEEcCCCCHH---HHHhhhcCCC-eEecCCceeeeEEEEecCCCchhHHHHHHHHHHHHh-cCCCCCEEEEeC
Q 001046 665 RRPDLRLIVTSATLDAE---KFSGYFFNCN-IFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHL-TEPEGDILLFLT 739 (1176)
Q Consensus 665 ~r~~~kvIlmSATl~~~---~~~~~f~~~~-v~~i~gr~~pv~~~~~~~~~~~~~~~~l~~v~~i~~-~~~~g~iLVFl~ 739 (1176)
..|+.++|+||||++.. .+..++.... +....+...| .+.|............+..++.+.. ...++++||||+
T Consensus 197 ~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~-nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~ 275 (591)
T 2v1x_A 197 QFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRP-NLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCF 275 (591)
T ss_dssp HCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCT-TEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECS
T ss_pred hCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCc-ccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeC
Confidence 67889999999999853 4555554332 2222221111 1222211111112233344444433 235789999999
Q ss_pred CHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCccc
Q 001046 740 GQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAK 819 (1176)
Q Consensus 740 ~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k 819 (1176)
++++++.++..|.+. ++.+.++||+|++++|..+++.|..|..+|||||+++++|||+|+|++||++++
T Consensus 276 sr~~~e~la~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~-- 344 (591)
T 2v1x_A 276 SQKDSEQVTVSLQNL---------GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSM-- 344 (591)
T ss_dssp SHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSC--
T ss_pred cHHHHHHHHHHHHHC---------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCC--
Confidence 999999999999762 577999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCccccccccCHHHHHHHhcccCCCC-CcEEEEecChHHHh
Q 001046 820 QNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESAYR 867 (1176)
Q Consensus 820 ~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~~~ 867 (1176)
|.|.++|+||+|||||.| +|.|+.||+..+..
T Consensus 345 ----------------p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~ 377 (591)
T 2v1x_A 345 ----------------SKSMENYYQESGRAGRDDMKADCILYYGFGDIF 377 (591)
T ss_dssp ----------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred ----------------CCCHHHHHHHhccCCcCCCCceEEEEEChHHHH
Confidence 999999999999999999 89999999988764
No 21
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.9e-35 Score=342.86 Aligned_cols=310 Identities=20% Similarity=0.237 Sum_probs=235.2
Q ss_pred CCchHHHHHHHHHHHcC-CeEEEEcCCCCcHHHHHHHHHHHhccc-CCCEEEEeccHHHHHHHHHHHHHHHhCCccCCee
Q 001046 523 LPIYKLKKELIQAVHDN-QVLVVIGETGSGKTTQVTQYLAEAGYT-TRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEV 600 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~-~~vIv~apTGSGKTt~~~~~lle~~~~-~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~v 600 (1176)
-..+++|.++++.+.++ +++++++|||||||+++..+++..... .+.++++++|+++|+.|+++++....+.. +..+
T Consensus 27 ~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v 105 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNK-NLKI 105 (367)
T ss_dssp CSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSS-CCCE
T ss_pred CCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCC-CceE
Confidence 35789999999999888 799999999999999999988876543 34589999999999999999988776542 2233
Q ss_pred EEEeeccc-----ccCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEE
Q 001046 601 GYAIRFED-----CTGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVT 674 (1176)
Q Consensus 601 Gy~ir~~~-----~~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlm 674 (1176)
+....... .......|+++|++.|++.+.... .+.++++|||||||.. ....+...+.+.+....++.++|+|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 184 (367)
T 1hv8_A 106 AKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEM-LNMGFIKDVEKILNACNKDKRILLF 184 (367)
T ss_dssp EEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHH-HTTTTHHHHHHHHHTSCSSCEEEEE
T ss_pred EEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHh-hhhchHHHHHHHHHhCCCCceEEEE
Confidence 32221111 011257899999999999887655 5889999999999952 2222222222222334578999999
Q ss_pred cCCCCHH---HHHhhhcCCCeEecCCceeeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHH
Q 001046 675 SATLDAE---KFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSL 751 (1176)
Q Consensus 675 SATl~~~---~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L 751 (1176)
|||++.. .+..++.+...+... ....+...|......+.+. .+..+ .....+++||||+++++++.+++.|
T Consensus 185 SAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~l~~~-l~~~~~~~lvf~~~~~~~~~l~~~L 258 (367)
T 1hv8_A 185 SATMPREILNLAKKYMGDYSFIKAK-INANIEQSYVEVNENERFE----ALCRL-LKNKEFYGLVFCKTKRDTKELASML 258 (367)
T ss_dssp CSSCCHHHHHHHHHHCCSEEEEECC-SSSSSEEEEEECCGGGHHH----HHHHH-HCSTTCCEEEECSSHHHHHHHHHHH
T ss_pred eeccCHHHHHHHHHHcCCCeEEEec-CCCCceEEEEEeChHHHHH----HHHHH-HhcCCCcEEEEECCHHHHHHHHHHH
Confidence 9999754 334455444333332 2234555554444333332 22222 2356789999999999999999998
Q ss_pred HHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCCcc
Q 001046 752 YERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDS 831 (1176)
Q Consensus 752 ~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~ 831 (1176)
.+. ++.+..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||+++.
T Consensus 259 ~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~-------------- 315 (367)
T 1hv8_A 259 RDI---------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHL-------------- 315 (367)
T ss_dssp HHT---------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSC--------------
T ss_pred Hhc---------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecC--------------
Confidence 762 567889999999999999999999999999999999999999999999999998
Q ss_pred ccccccCHHHHHHHhcccCCCC-CcEEEEecChHHHh
Q 001046 832 LVITPISQASAKQRAGRAGRTG-PGKCYRLYTESAYR 867 (1176)
Q Consensus 832 l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~~~ 867 (1176)
|.|..+|.||+|||||.| +|.||.++++.++.
T Consensus 316 ----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 348 (367)
T 1hv8_A 316 ----PQNPESYMHRIGRTGRAGKKGKAISIINRREYK 348 (367)
T ss_dssp ----CSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHH
T ss_pred ----CCCHHHhhhcccccccCCCccEEEEEEcHHHHH
Confidence 999999999999999998 89999999987664
No 22
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=4.4e-38 Score=375.24 Aligned_cols=285 Identities=20% Similarity=0.233 Sum_probs=213.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEEEeec-ccccCCCceE
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRF-EDCTGPDTVI 616 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~-~~~~~~~t~I 616 (1176)
++++++++||||||||+++..++++.....+.+++|++||++||.|+++.+. |..+++.... .....++..+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~~~~~~~~~ 73 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQSERTGNEIV 73 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC---------CCCSE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccccCCCCceE
Confidence 4789999999999999998777775555566799999999999999887653 3455654443 3344567888
Q ss_pred EEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCCCHHHHHhhh-cCCCeEec
Q 001046 617 KYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYF-FNCNIFTI 695 (1176)
Q Consensus 617 ~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl~~~~~~~~f-~~~~v~~i 695 (1176)
.++|.|.+.+.+..+..+.++++|||||||..+...+.....++.+. .+++.++|+||||++.. +..+. .+.|++.+
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~-~~~~~~~~~~i~~~ 151 (431)
T 2v6i_A 74 DFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRV-SMGDAGAIFMTATPPGT-TEAFPPSNSPIIDE 151 (431)
T ss_dssp EEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HTTSCEEEEEESSCTTC-CCSSCCCSSCCEEE
T ss_pred EEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHh-hCCCCcEEEEeCCCCcc-hhhhcCCCCceeec
Confidence 99999999999988888999999999999987655566667776665 35689999999999642 11111 12222222
Q ss_pred CCceeeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCC
Q 001046 696 PGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALP 775 (1176)
Q Consensus 696 ~gr~~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~ 775 (1176)
... + +...+ .. ++.. .....+++||||+++++++.+++.|.+. ++.+..+||.
T Consensus 152 ~~~-------~---~~~~~-~~----~~~~-l~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~v~~lhg~-- 204 (431)
T 2v6i_A 152 ETR-------I---PDKAW-NS----GYEW-ITEFDGRTVWFVHSIKQGAEIGTCLQKA---------GKKVLYLNRK-- 204 (431)
T ss_dssp ECC-------C---CSSCC-SS----CCHH-HHSCSSCEEEECSSHHHHHHHHHHHHHT---------TCCEEEESTT--
T ss_pred ccc-------C---CHHHH-HH----HHHH-HHcCCCCEEEEeCCHHHHHHHHHHHHHc---------CCeEEEeCCc--
Confidence 111 1 11111 00 0111 1224789999999999999999988763 5678999997
Q ss_pred HHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCCC-
Q 001046 776 SEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGP- 854 (1176)
Q Consensus 776 ~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g~- 854 (1176)
+|..+++.|+.|..+|||||+++|+|||+| +.+|||+|..+..+|| ..++......|.+.++|.||+|||||.|+
T Consensus 205 --~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~ 280 (431)
T 2v6i_A 205 --TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEK 280 (431)
T ss_dssp --THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred --cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHHHHhhhccCCCCCC
Confidence 577899999999999999999999999999 9999999999999998 66777777789999999999999999983
Q ss_pred cEEEEecC
Q 001046 855 GKCYRLYT 862 (1176)
Q Consensus 855 G~c~~L~t 862 (1176)
+.|+.+|.
T Consensus 281 ~~~~~~~~ 288 (431)
T 2v6i_A 281 LGDIYAYS 288 (431)
T ss_dssp CCCEEEEC
T ss_pred CCeEEEEc
Confidence 44555554
No 23
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.5e-37 Score=371.75 Aligned_cols=319 Identities=15% Similarity=0.169 Sum_probs=124.5
Q ss_pred CCchHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHHHHHHHhcccC--CCEEEEeccHHHHHHHHHHHHHHHhCCccCC
Q 001046 523 LPIYKLKKELIQAVHDN--QVLVVIGETGSGKTTQVTQYLAEAGYTT--RGKIGCTQPRRVAAMSVAKRVAEEFGCRLGE 598 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~--~~vIv~apTGSGKTt~~~~~lle~~~~~--~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~ 598 (1176)
-..+++|.++++.+..+ ++++++||||||||+++.++++...... .++++|++|+++||.|+++.+........+.
T Consensus 113 ~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 192 (479)
T 3fmp_B 113 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 192 (479)
T ss_dssp CSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTC
T ss_pred CCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCc
Confidence 34678899999999987 9999999999999999999998865432 2389999999999999999876665444455
Q ss_pred eeEEEeecccc---cCCCceEEEeChHHHHHHHhhCC--CCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEE
Q 001046 599 EVGYAIRFEDC---TGPDTVIKYMTDGMLLREILIDD--NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIV 673 (1176)
Q Consensus 599 ~vGy~ir~~~~---~~~~t~I~~~T~g~Llr~l~~~~--~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIl 673 (1176)
.+++.+..... ......|+|+|++.|++.+.... .+.++++|||||||.......+............++.++|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~ 272 (479)
T 3fmp_B 193 KLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLL 272 (479)
T ss_dssp CEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEE
T ss_pred eEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEE
Confidence 56665544332 23356899999999999987644 46899999999999432212232222322223456899999
Q ss_pred EcCCCCHH--HHHhhhcCCC-eEecCCcee---eeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHH
Q 001046 674 TSATLDAE--KFSGYFFNCN-IFTIPGRTF---PVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFA 747 (1176)
Q Consensus 674 mSATl~~~--~~~~~f~~~~-v~~i~gr~~---pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l 747 (1176)
||||++.. .+...+...+ ++.+..... .+...|...... ......+..+......+++||||+++..++.+
T Consensus 273 ~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l 349 (479)
T 3fmp_B 273 FSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR---DEKFQALCNLYGAITIAQAMIFCHTRKTASWL 349 (479)
T ss_dssp EESCCCHHHHHHHHHHSSSEEEEEEC------------------------------------------------------
T ss_pred EeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCH---HHHHHHHHHHHhhccCCceEEEeCcHHHHHHH
Confidence 99999753 4554444333 333332211 111122211111 11223333333444568999999999999999
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCC
Q 001046 748 CQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQ 827 (1176)
Q Consensus 748 ~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~ 827 (1176)
+..|... ++.+..+||++++.+|..+++.|+.|..+|||||+++++|||+|+|++||++++.....
T Consensus 350 ~~~L~~~---------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~----- 415 (479)
T 3fmp_B 350 AAELSKE---------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD----- 415 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhC---------CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCc-----
Confidence 8888653 56788999999999999999999999999999999999999999999999999811000
Q ss_pred CCccccccccCHHHHHHHhcccCCCC-CcEEEEecChHH
Q 001046 828 GLDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESA 865 (1176)
Q Consensus 828 g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~ 865 (1176)
.+.|..+|+||+|||||.| +|.||.||+...
T Consensus 416 -------~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 416 -------GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp ---------------------------------------
T ss_pred -------cCCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 0257789999999999999 799999998754
No 24
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=5.4e-35 Score=342.83 Aligned_cols=311 Identities=15% Similarity=0.149 Sum_probs=233.3
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc--CCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeE
Q 001046 524 PIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT--TRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVG 601 (1176)
Q Consensus 524 Pi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~--~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vG 601 (1176)
..+++|.++++.+..++++++++|||+|||+++..+++..... .+.+++|++|+++|+.|+++.+........+..++
T Consensus 30 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 109 (391)
T 1xti_A 30 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 109 (391)
T ss_dssp SCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEE
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 3789999999999999999999999999999998888876433 24489999999999999999886655433244454
Q ss_pred EEeecccc-------cCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-hCCCccEE
Q 001046 602 YAIRFEDC-------TGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK-RRPDLRLI 672 (1176)
Q Consensus 602 y~ir~~~~-------~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~-~r~~~kvI 672 (1176)
........ ......|+++|+++|+..+.... .+.++++|||||||...-..++... +..+.. ..++.++|
T Consensus 110 ~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~-~~~~~~~~~~~~~~i 188 (391)
T 1xti_A 110 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRD-VQEIFRMTPHEKQVM 188 (391)
T ss_dssp EECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHH-HHHHHHTSCSSSEEE
T ss_pred EEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHH-HHHHHhhCCCCceEE
Confidence 33222111 11346899999999999887655 5899999999999953332343333 333333 44588999
Q ss_pred EEcCCCCH--HHHH-hhhcCCCeEecCCce----eeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHH
Q 001046 673 VTSATLDA--EKFS-GYFFNCNIFTIPGRT----FPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEID 745 (1176)
Q Consensus 673 lmSATl~~--~~~~-~~f~~~~v~~i~gr~----~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~ 745 (1176)
+||||++. ..+. .++.....+.+.... ..+...+......... . .+..+......+++||||+++++++
T Consensus 189 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~l~~~l~~~~~~~~lvf~~~~~~~~ 264 (391)
T 1xti_A 189 MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKN-R---KLFDLLDVLEFNQVVIFVKSVQRCI 264 (391)
T ss_dssp EEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHH-H---HHHHHHHHSCCSEEEEECSCHHHHH
T ss_pred EEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHH-H---HHHHHHHhcCCCcEEEEeCcHHHHH
Confidence 99999963 3344 444333333333211 2233444433332222 2 2222333346789999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccC
Q 001046 746 FACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNP 825 (1176)
Q Consensus 746 ~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~ 825 (1176)
.+++.|.+. ++.+..+||+++.++|..+++.|+.|..+|||||+++++|+|+|++++||+++.
T Consensus 265 ~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~-------- 327 (391)
T 1xti_A 265 ALAQLLVEQ---------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM-------- 327 (391)
T ss_dssp HHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSC--------
T ss_pred HHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCC--------
Confidence 999998762 567889999999999999999999999999999999999999999999999998
Q ss_pred CCCCccccccccCHHHHHHHhcccCCCC-CcEEEEecChHHH
Q 001046 826 KQGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESAY 866 (1176)
Q Consensus 826 ~~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~~ 866 (1176)
|.|..+|+||+|||||.| +|.||.++++.+.
T Consensus 328 ----------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 328 ----------PEDSDTYLHRVARAGRFGTKGLAITFVSDEND 359 (391)
T ss_dssp ----------CSSHHHHHHHHCBCSSSCCCCEEEEEECSHHH
T ss_pred ----------CCCHHHHHHhcccccCCCCceEEEEEEcccch
Confidence 999999999999999998 8999999997643
No 25
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.6e-36 Score=375.36 Aligned_cols=301 Identities=19% Similarity=0.225 Sum_probs=233.5
Q ss_pred HhcCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCe
Q 001046 520 RQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEE 599 (1176)
Q Consensus 520 r~~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~ 599 (1176)
+..+||+.. .++.+.+++++|++||||||||+++.+++++.....+.+++|++|||+||.|+++.+. |..
T Consensus 170 ~~~lpiq~~---~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~-------~~~ 239 (618)
T 2whx_A 170 RIGEPDYEV---DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR-------GLP 239 (618)
T ss_dssp CCCCCCCCC---CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TSC
T ss_pred ccCCCcccc---CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc-------CCc
Confidence 667888654 3888999999999999999999998887776655556789999999999999998653 445
Q ss_pred eEEEeec-ccccCCCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCC
Q 001046 600 VGYAIRF-EDCTGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATL 678 (1176)
Q Consensus 600 vGy~ir~-~~~~~~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl 678 (1176)
++|..+. +....++..+.++|.+.|.+.+..++.+.++++|||||||+++...+..+..+...+. +++.++|+||||+
T Consensus 240 v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~-~~~~q~il~SAT~ 318 (618)
T 2whx_A 240 IRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE-MGEAAAIFMTATP 318 (618)
T ss_dssp EEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-HTSCEEEEECSSC
T ss_pred eeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhc-ccCccEEEEECCC
Confidence 6776654 3456678899999999999999999999999999999999876555556666655542 3689999999999
Q ss_pred CHHHHHhhhc-CCCeEecCCceeeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhc
Q 001046 679 DAEKFSGYFF-NCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKG 757 (1176)
Q Consensus 679 ~~~~~~~~f~-~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~ 757 (1176)
+.. ...++. +.+++.+.. .+ +...+ ...+..+ . ...+++||||+++++++.+++.|.+.
T Consensus 319 ~~~-~~~~~~~~~~~~~v~~-------~~---~~~~~-~~ll~~l----~-~~~~~~LVF~~s~~~a~~l~~~L~~~--- 378 (618)
T 2whx_A 319 PGS-TDPFPQSNSPIEDIER-------EI---PERSW-NTGFDWI----T-DYQGKTVWFVPSIKAGNDIANCLRKS--- 378 (618)
T ss_dssp TTC-CCSSCCCSSCEEEEEC-------CC---CSSCC-SSSCHHH----H-HCCSCEEEECSSHHHHHHHHHHHHHT---
T ss_pred chh-hhhhhccCCceeeecc-------cC---CHHHH-HHHHHHH----H-hCCCCEEEEECChhHHHHHHHHHHHc---
Confidence 644 122222 222232222 11 11111 0011111 1 23789999999999999999999763
Q ss_pred cCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceec--cCCCCCcccccc
Q 001046 758 LGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVY--NPKQGLDSLVIT 835 (1176)
Q Consensus 758 l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~y--d~~~g~~~l~~~ 835 (1176)
++.+..+||. +|.++++.|++|.++|||||+++++||||| |++|||+|+.+...+ +...++......
T Consensus 379 ------g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~ 447 (618)
T 2whx_A 379 ------GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPI 447 (618)
T ss_dssp ------TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEE
T ss_pred ------CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccc
Confidence 5678899984 688899999999999999999999999998 999999999777665 444556667777
Q ss_pred ccCHHHHHHHhcccCCCC--CcEEEEecC
Q 001046 836 PISQASAKQRAGRAGRTG--PGKCYRLYT 862 (1176)
Q Consensus 836 p~S~as~~QR~GRAGR~g--~G~c~~L~t 862 (1176)
|.|.++|+||+|||||.| +|.||.|++
T Consensus 448 P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 448 PVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred cCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 999999999999999997 899999997
No 26
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.5e-35 Score=363.58 Aligned_cols=318 Identities=17% Similarity=0.198 Sum_probs=230.4
Q ss_pred chHHHHHHHHHHH--cCCeEEEEcCCCCcHHHHHHHHHHHhcccC------CCEEEEeccHHHHHHHHHHHHHHHhCCcc
Q 001046 525 IYKLKKELIQAVH--DNQVLVVIGETGSGKTTQVTQYLAEAGYTT------RGKIGCTQPRRVAAMSVAKRVAEEFGCRL 596 (1176)
Q Consensus 525 i~~~q~~ii~ai~--~~~~vIv~apTGSGKTt~~~~~lle~~~~~------~~~Ilv~~PrR~lA~qva~rva~e~g~~~ 596 (1176)
++++|.++++.+. .+++++++||||||||+++.++++...... +.+++|++|+++||.|+++.+....+...
T Consensus 95 ~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~ 174 (563)
T 3i5x_A 95 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 174 (563)
T ss_dssp CCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhcc
Confidence 6788999999998 678999999999999999888888754332 24799999999999999998877543211
Q ss_pred C---CeeEEEeeccc-------ccCCCceEEEeChHHHHHHHhhC--CCCCCCceEEEcCCCcCC--CchhHHHHHHHHH
Q 001046 597 G---EEVGYAIRFED-------CTGPDTVIKYMTDGMLLREILID--DNLSQYSVIMLDEAHERT--IHTDVLFGLLKQL 662 (1176)
Q Consensus 597 G---~~vGy~ir~~~-------~~~~~t~I~~~T~g~Llr~l~~~--~~L~~~s~IIiDEaHeR~--~~~d~ll~llk~~ 662 (1176)
+ ..+........ .......|+|+||++|+..+... ..+.++++|||||||+-. .....+..++..+
T Consensus 175 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l 254 (563)
T 3i5x_A 175 GLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGIL 254 (563)
T ss_dssp GGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHH
T ss_pred ccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhh
Confidence 1 11221111111 01235789999999999887654 258889999999999411 1222333333333
Q ss_pred Hhh----CCCccEEEEcCCCC--HHHHHhhhcCCCe-EecC--C-----ceeeeEEEEe-cCCCchhHHHHHHHHHHHH-
Q 001046 663 VKR----RPDLRLIVTSATLD--AEKFSGYFFNCNI-FTIP--G-----RTFPVEILYT-KQPESDYLDASLITVLQIH- 726 (1176)
Q Consensus 663 ~~~----r~~~kvIlmSATl~--~~~~~~~f~~~~v-~~i~--g-----r~~pv~~~~~-~~~~~~~~~~~l~~v~~i~- 726 (1176)
... .+++++|+||||++ ...+...+...+. +.+. . ....+...+. ...........+..+....
T Consensus 255 ~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 334 (563)
T 3i5x_A 255 NEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIK 334 (563)
T ss_dssp HHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHH
T ss_pred hhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHh
Confidence 322 34789999999997 3566666655432 2211 0 0111222221 1112222333333333322
Q ss_pred hcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCC
Q 001046 727 LTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTI 806 (1176)
Q Consensus 727 ~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdI 806 (1176)
.....+++||||+++..++.++..|.+.+. .++.+..+||+|++.+|..+++.|+.|..+|||||+++++|||+
T Consensus 335 ~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDi 408 (563)
T 3i5x_A 335 ERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDF 408 (563)
T ss_dssp HTTTCCEEEEECSCHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCC
T ss_pred hcCCCCcEEEEcCcHHHHHHHHHHHHHhcc------CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCc
Confidence 235678999999999999999999987642 25678999999999999999999999999999999999999999
Q ss_pred CCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC-CcEEEEecChHHH
Q 001046 807 DGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESAY 866 (1176)
Q Consensus 807 p~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~~ 866 (1176)
|+|++||++++ |.|..+|+||+|||||.| +|.|+.++++.+.
T Consensus 409 p~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 451 (563)
T 3i5x_A 409 PNVHEVLQIGV------------------PSELANYIHRIGRTARSGKEGSSVLFICKDEL 451 (563)
T ss_dssp TTCCEEEEESC------------------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred ccCCEEEEECC------------------CCchhhhhhhcCccccCCCCceEEEEEchhHH
Confidence 99999999998 999999999999999999 8999999998654
No 27
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-35 Score=377.97 Aligned_cols=323 Identities=18% Similarity=0.235 Sum_probs=240.8
Q ss_pred cCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeE
Q 001046 522 SLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVG 601 (1176)
Q Consensus 522 ~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vG 601 (1176)
.+.++++|.+++.++..+++++|+||||||||+++..+++.. +..+++++|++|+++|+.|+++.+...++ .+|
T Consensus 84 ~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~-l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-----~vg 157 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS-LKNKQRVIYTSPIKALSNQKYRELLAEFG-----DVG 157 (1010)
T ss_dssp SSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHHHHHS-----CEE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH-hccCCeEEEECChHHHHHHHHHHHHHHhC-----CEE
Confidence 345889999999999999999999999999999987777664 34567999999999999999999988886 344
Q ss_pred EEeecccccCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCch--hHHHHHHHHHHhhCCCccEEEEcCCC
Q 001046 602 YAIRFEDCTGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHT--DVLFGLLKQLVKRRPDLRLIVTSATL 678 (1176)
Q Consensus 602 y~ir~~~~~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~--d~ll~llk~~~~~r~~~kvIlmSATl 678 (1176)
. +.++....+...|+|||+++|...+.... .+.++++|||||||. ..+. ......+ +....++.++|+||||+
T Consensus 158 l-ltGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~-l~d~~rg~~~e~i--l~~l~~~~~il~LSATi 233 (1010)
T 2xgj_A 158 L-MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY-MRDKERGVVWEET--IILLPDKVRYVFLSATI 233 (1010)
T ss_dssp E-ECSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGG-GGCTTTHHHHHHH--HHHSCTTCEEEEEECCC
T ss_pred E-EeCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhh-hcccchhHHHHHH--HHhcCCCCeEEEEcCCC
Confidence 3 23344455678999999999998887664 689999999999994 2221 2211111 12235689999999999
Q ss_pred -CHHHHHhhhc-----CCCeEecCCceeeeEEEEecCC----------Cchh-----H----------------------
Q 001046 679 -DAEKFSGYFF-----NCNIFTIPGRTFPVEILYTKQP----------ESDY-----L---------------------- 715 (1176)
Q Consensus 679 -~~~~~~~~f~-----~~~v~~i~gr~~pv~~~~~~~~----------~~~~-----~---------------------- 715 (1176)
+...|+.|+. .+.++..+++..|+..++.... ...+ .
T Consensus 234 ~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~ 313 (1010)
T 2xgj_A 234 PNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGK 313 (1010)
T ss_dssp TTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC---------------
T ss_pred CCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccc
Confidence 5778888875 3556677788888876655321 0000 0
Q ss_pred --------------HHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHH------------------HhccCCCCC
Q 001046 716 --------------DASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYER------------------MKGLGKNVP 763 (1176)
Q Consensus 716 --------------~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~------------------~~~l~~~~~ 763 (1176)
...+..++........+++||||+++..++.++..|... +..+.....
T Consensus 314 ~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~ 393 (1010)
T 2xgj_A 314 KGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDR 393 (1010)
T ss_dssp ---------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGT
T ss_pred cccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhh
Confidence 111223344334445679999999999999988877531 000000000
Q ss_pred ------------CeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCCcc
Q 001046 764 ------------ELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDS 831 (1176)
Q Consensus 764 ------------~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~ 831 (1176)
...+..+||+|++.+|..+++.|+.|.++|||||+++++|||+|++++||+. ...||...
T Consensus 394 ~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~---- 465 (1010)
T 2xgj_A 394 ELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ---- 465 (1010)
T ss_dssp TCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSSC----
T ss_pred cchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCcC----
Confidence 1137889999999999999999999999999999999999999999999973 22444332
Q ss_pred ccccccCHHHHHHHhcccCCCC---CcEEEEecChH
Q 001046 832 LVITPISQASAKQRAGRAGRTG---PGKCYRLYTES 864 (1176)
Q Consensus 832 l~~~p~S~as~~QR~GRAGR~g---~G~c~~L~t~~ 864 (1176)
..|.|..+|.||+|||||.| .|.||.|+++.
T Consensus 466 --~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 466 --FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp --EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred --CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 34899999999999999999 49999999854
No 28
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.2e-34 Score=358.89 Aligned_cols=317 Identities=16% Similarity=0.187 Sum_probs=230.0
Q ss_pred chHHHHHHHHHHH--cCCeEEEEcCCCCcHHHHHHHHHHHhcccC------CCEEEEeccHHHHHHHHHHHHHHHhC---
Q 001046 525 IYKLKKELIQAVH--DNQVLVVIGETGSGKTTQVTQYLAEAGYTT------RGKIGCTQPRRVAAMSVAKRVAEEFG--- 593 (1176)
Q Consensus 525 i~~~q~~ii~ai~--~~~~vIv~apTGSGKTt~~~~~lle~~~~~------~~~Ilv~~PrR~lA~qva~rva~e~g--- 593 (1176)
++++|.++++.+. .+++++++||||||||+++.+++++..... ..+++|++|+++||.|++..+.....
T Consensus 44 ~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~ 123 (579)
T 3sqw_A 44 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 123 (579)
T ss_dssp CCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcc
Confidence 6789999999998 788999999999999999888888754332 24799999999999999998877542
Q ss_pred -CccCCeeEEEeecccc-------cCCCceEEEeChHHHHHHHhhC--CCCCCCceEEEcCCCcCC--CchhHHHHHHHH
Q 001046 594 -CRLGEEVGYAIRFEDC-------TGPDTVIKYMTDGMLLREILID--DNLSQYSVIMLDEAHERT--IHTDVLFGLLKQ 661 (1176)
Q Consensus 594 -~~~G~~vGy~ir~~~~-------~~~~t~I~~~T~g~Llr~l~~~--~~L~~~s~IIiDEaHeR~--~~~d~ll~llk~ 661 (1176)
..... +...+..... ......|+|+||++|+..+... ..+..+++|||||||+-. ...+.+..++..
T Consensus 124 ~~~~~~-~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~ 202 (579)
T 3sqw_A 124 GLKKYA-CVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGI 202 (579)
T ss_dssp GGTTSC-EEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHH
T ss_pred cccceE-EEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHH
Confidence 22111 1111111110 0135789999999999887653 268899999999999521 122233333333
Q ss_pred HHhhC----CCccEEEEcCCCCH--HHHHhhhcCCCe-EecCC-------ceeeeEEEEec-CCCchhHHHHHHHHHHHH
Q 001046 662 LVKRR----PDLRLIVTSATLDA--EKFSGYFFNCNI-FTIPG-------RTFPVEILYTK-QPESDYLDASLITVLQIH 726 (1176)
Q Consensus 662 ~~~~r----~~~kvIlmSATl~~--~~~~~~f~~~~v-~~i~g-------r~~pv~~~~~~-~~~~~~~~~~l~~v~~i~ 726 (1176)
+.... ++.++|+||||++. ..+...+...+. +.+.. ....+...+.. ..........+..+....
T Consensus 203 l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 282 (579)
T 3sqw_A 203 LNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQI 282 (579)
T ss_dssp HHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHH
T ss_pred hhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHH
Confidence 33322 37899999999973 555555554432 22111 01112222221 111222223333333322
Q ss_pred -hcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccC
Q 001046 727 -LTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLT 805 (1176)
Q Consensus 727 -~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GId 805 (1176)
...+.+++||||+++..++.++..|.+.+. .++.+..+||+|++.+|..+++.|+.|..+|||||+++++|||
T Consensus 283 ~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~------~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiD 356 (579)
T 3sqw_A 283 KERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMD 356 (579)
T ss_dssp HHTTTCCEEEEECSSHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCC
T ss_pred hhcCCCCcEEEECCcHHHHHHHHHHHHHhhc------CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCC
Confidence 235678999999999999999999987642 2567899999999999999999999999999999999999999
Q ss_pred CCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC-CcEEEEecChHHH
Q 001046 806 IDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESAY 866 (1176)
Q Consensus 806 Ip~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~~ 866 (1176)
+|+|++||++++ |.+..+|+||+|||||.| +|.|+.+|++.+.
T Consensus 357 ip~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 400 (579)
T 3sqw_A 357 FPNVHEVLQIGV------------------PSELANYIHRIGRTARSGKEGSSVLFICKDEL 400 (579)
T ss_dssp CTTCCEEEEESC------------------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred cccCCEEEEcCC------------------CCCHHHhhhhccccccCCCCceEEEEEcccHH
Confidence 999999999999 999999999999999999 8999999998654
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.3e-34 Score=332.14 Aligned_cols=297 Identities=19% Similarity=0.214 Sum_probs=223.1
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEE
Q 001046 523 LPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGY 602 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy 602 (1176)
-.++++|.++++++.+++++++++|||||||+++..++++. +.++++++|+++|+.|+++++.+. +...+..++.
T Consensus 15 ~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~-~~~~~~~~~~ 89 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQVASHIRDI-GRYMDTKVAE 89 (337)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHHHHHHHHH-TTTSCCCEEE
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHHHHHHHHH-hhhcCCcEEE
Confidence 35789999999999999999999999999999999888875 567999999999999999987654 3333444443
Q ss_pred Eeecccc-----cCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-hCCCccEEEEc
Q 001046 603 AIRFEDC-----TGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK-RRPDLRLIVTS 675 (1176)
Q Consensus 603 ~ir~~~~-----~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~-~r~~~kvIlmS 675 (1176)
....... ......|+|+|++.|++.+.... .+.++++||+||||.- ....+ ...+..++. .....++++||
T Consensus 90 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~-~~~~~-~~~~~~~~~~~~~~~~~~~~S 167 (337)
T 2z0m_A 90 VYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLM-FEMGF-IDDIKIILAQTSNRKITGLFS 167 (337)
T ss_dssp ECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHH-HHTTC-HHHHHHHHHHCTTCSEEEEEE
T ss_pred EECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHh-hcccc-HHHHHHHHhhCCcccEEEEEe
Confidence 3222111 11347899999999999877654 5789999999999941 11111 122333333 34567888999
Q ss_pred CCCCHH---HHHhhhcCCCeEecCCceeeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHH
Q 001046 676 ATLDAE---KFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLY 752 (1176)
Q Consensus 676 ATl~~~---~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~ 752 (1176)
||++.. .+..++.+...+........+...+...... + .. .+........+++||||+++++++.+++.|.
T Consensus 168 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~----~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~ 241 (337)
T 2z0m_A 168 ATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDD-W-RS----KVQALRENKDKGVIVFVRTRNRVAKLVRLFD 241 (337)
T ss_dssp SCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSS-S-HH----HHHHHHTCCCSSEEEECSCHHHHHHHHTTCT
T ss_pred CcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChH-H-HH----HHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh
Confidence 999743 4555555544444333333444444433221 1 11 1233344677899999999999988776653
Q ss_pred HHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCCccc
Q 001046 753 ERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSL 832 (1176)
Q Consensus 753 ~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l 832 (1176)
.+..+||+++..+|..+++.|+.|..+|||||+++++|+|+|++++||+++.
T Consensus 242 -------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~--------------- 293 (337)
T 2z0m_A 242 -------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDA--------------- 293 (337)
T ss_dssp -------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSC---------------
T ss_pred -------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecC---------------
Confidence 2678999999999999999999999999999999999999999999999998
Q ss_pred cccccCHHHHHHHhcccCCCC-CcEEEEecCh
Q 001046 833 VITPISQASAKQRAGRAGRTG-PGKCYRLYTE 863 (1176)
Q Consensus 833 ~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~ 863 (1176)
|.|..+|.||+|||||.| +|.|+.++..
T Consensus 294 ---~~s~~~~~Q~~GR~gR~g~~g~~~~~~~~ 322 (337)
T 2z0m_A 294 ---PQDLRTYIHRIGRTGRMGRKGEAITFILN 322 (337)
T ss_dssp ---CSSHHHHHHHHTTBCGGGCCEEEEEEESS
T ss_pred ---CCCHHHhhHhcCccccCCCCceEEEEEeC
Confidence 899999999999999998 8999999983
No 30
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=7.5e-36 Score=350.22 Aligned_cols=313 Identities=16% Similarity=0.238 Sum_probs=119.2
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc--CCCEEEEeccHHHHHHHHHHHHHHHhCCccCCee
Q 001046 523 LPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT--TRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEV 600 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~--~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~v 600 (1176)
-..+++|.++++.+..++++++++|||||||+++..+++..... .++++++++|+++|+.|+++.+.... ...+..+
T Consensus 42 ~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~-~~~~~~~ 120 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA-FHMDIKV 120 (394)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT-TTSCCCE
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHh-ccCCeeE
Confidence 35789999999999999999999999999999998888876443 34589999999999999999876543 3334444
Q ss_pred EEEeecccc-----cCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEE
Q 001046 601 GYAIRFEDC-----TGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVT 674 (1176)
Q Consensus 601 Gy~ir~~~~-----~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlm 674 (1176)
+........ ......|+++|++.|++.+.... .+.++++||+||||. ....++...+...+....++.++|+|
T Consensus 121 ~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 199 (394)
T 1fuu_A 121 HACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE-MLSSGFKEQIYQIFTLLPPTTQVVLL 199 (394)
T ss_dssp EEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HHHTTCHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH-hhCCCcHHHHHHHHHhCCCCceEEEE
Confidence 432222110 01257899999999999887654 578999999999995 11112222222222234578899999
Q ss_pred cCCCCHH--H-HHhhhcCCCeEecCCceee---eEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHH
Q 001046 675 SATLDAE--K-FSGYFFNCNIFTIPGRTFP---VEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFAC 748 (1176)
Q Consensus 675 SATl~~~--~-~~~~f~~~~v~~i~gr~~p---v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~ 748 (1176)
|||++.. . +..++.+...+.+...... +..+|......++.. ..+..+......+++||||+++++++.++
T Consensus 200 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~lVf~~~~~~~~~l~ 276 (394)
T 1fuu_A 200 SATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKY---ECLTDLYDSISVTQAVIFCNTRRKVEELT 276 (394)
T ss_dssp CSSCCHHHHHHHHHHCCSCEEEEECC------------------------------------------------------
T ss_pred EEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHH---HHHHHHHhcCCCCcEEEEECCHHHHHHHH
Confidence 9999743 3 3344433323333222211 122222222222111 22222233345679999999999999999
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCC
Q 001046 749 QSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQG 828 (1176)
Q Consensus 749 ~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g 828 (1176)
+.|.+. ++.+..+||+++.++|..+++.|+.|..+|||||+++++|+|+|++++||+++.
T Consensus 277 ~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~----------- 336 (394)
T 1fuu_A 277 TKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDL----------- 336 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHc---------CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCC-----------
Confidence 888652 567889999999999999999999999999999999999999999999999998
Q ss_pred CccccccccCHHHHHHHhcccCCCC-CcEEEEecChHHHh
Q 001046 829 LDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESAYR 867 (1176)
Q Consensus 829 ~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~~~ 867 (1176)
|.|..+|+||+|||||.| +|.||.+|++.+..
T Consensus 337 -------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 369 (394)
T 1fuu_A 337 -------PANKENYIHRIGRGGRFGRKGVAINFVTNEDVG 369 (394)
T ss_dssp ----------------------------------------
T ss_pred -------CCCHHHHHHHcCcccCCCCCceEEEEEchhHHH
Confidence 999999999999999998 89999999987653
No 31
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.1e-35 Score=369.19 Aligned_cols=316 Identities=18% Similarity=0.139 Sum_probs=219.9
Q ss_pred HHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCc
Q 001046 535 AVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDT 614 (1176)
Q Consensus 535 ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t 614 (1176)
..+++++++++||||||||+.+++.+... +..++++|+|+||.|+++++.+ +|..++..+|.............
T Consensus 151 r~l~rk~vlv~apTGSGKT~~al~~l~~~-----~~gl~l~PtR~LA~Qi~~~l~~-~g~~v~lltG~~~~iv~TpGr~~ 224 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYHAIQKYFSA-----KSGVYCGPLKLLAHEIFEKSNA-AGVPCDLVTGEERVTVQPNGKQA 224 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHHHHHHHHHS-----SSEEEEESSHHHHHHHHHHHHH-TTCCEEEECSSCEECCSTTCCCC
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHhc-----CCeEEEeCHHHHHHHHHHHHHh-cCCcEEEEECCeeEEecCCCccc
Confidence 34688999999999999999777776654 2348889999999999999754 45554433332222111112236
Q ss_pred eEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhC-CCccEEEEcCCCC-HHHHHhhhcCCCe
Q 001046 615 VIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRR-PDLRLIVTSATLD-AEKFSGYFFNCNI 692 (1176)
Q Consensus 615 ~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r-~~~kvIlmSATl~-~~~~~~~f~~~~v 692 (1176)
.++++|.+++ +.+..+++|||||||+. .+.++...+...+.... ++++++++|||.+ ...+....+....
T Consensus 225 ~il~~T~e~~-------~l~~~v~lvVIDEaH~l-~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~~ 296 (677)
T 3rc3_A 225 SHVSCTVEMC-------SVTTPYEVAVIDEIQMI-RDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVE 296 (677)
T ss_dssp SEEEEEGGGC-------CSSSCEEEEEECSGGGG-GCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCEE
T ss_pred ceeEecHhHh-------hhcccCCEEEEecceec-CCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCceE
Confidence 7888887654 35678899999999964 44555555444454444 6889999999964 3333433322212
Q ss_pred EecCCceeeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 001046 693 FTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYS 772 (1176)
Q Consensus 693 ~~i~gr~~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs 772 (1176)
+....+..+.. +...... .......| .+|||+++++++.++..|.+. ++.+.++||
T Consensus 297 v~~~~r~~~l~--~~~~~l~------------~l~~~~~g-~iIf~~s~~~ie~la~~L~~~---------g~~v~~lHG 352 (677)
T 3rc3_A 297 VRDYKRLTPIS--VLDHALE------------SLDNLRPG-DCIVCFSKNDIYSVSRQIEIR---------GLESAVIYG 352 (677)
T ss_dssp EEECCCSSCEE--ECSSCCC------------SGGGCCTT-EEEECSSHHHHHHHHHHHHHT---------TCCCEEECT
T ss_pred EEEeeecchHH--HHHHHHH------------HHHhcCCC-CEEEEcCHHHHHHHHHHHHhc---------CCCeeeeec
Confidence 21112222222 1111100 01112334 478899999999999999762 567899999
Q ss_pred CCCHHHHHhhcCCCCC--CCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccC
Q 001046 773 ALPSEMQSRIFDPAPP--GKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAG 850 (1176)
Q Consensus 773 ~l~~~~r~~i~~~f~~--g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAG 850 (1176)
+|++++|..+++.|.+ |.++|||||+++++|||| +|++||++|+.|. .||+..+. ...|+|.++|+||+||||
T Consensus 353 ~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~---~~~p~s~~~~~QR~GRAG 427 (677)
T 3rc3_A 353 SLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER---ELEPITTSQALQIAGRAG 427 (677)
T ss_dssp TSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHHHHHHHTTBT
T ss_pred cCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc---ccccCCHHHHHHHhcCCC
Confidence 9999999999999988 899999999999999999 8999999999888 88887433 256999999999999999
Q ss_pred CCC----CcEEEEecChH--HHhhhCCCCCchhhhhcChHHHHHHHHHcC
Q 001046 851 RTG----PGKCYRLYTES--AYRNEMSPTSIPEIQRINLGFTTLTMKAMG 894 (1176)
Q Consensus 851 R~g----~G~c~~L~t~~--~~~~~l~~~~~pEI~r~~L~~~~L~lk~~g 894 (1176)
|.| +|.||++++++ .+. .+.....|+|.+.+|....++++.++
T Consensus 428 R~g~~g~~G~v~~l~~~d~~~~~-~~~~~~~~~i~~~~l~p~~~~l~~~~ 476 (677)
T 3rc3_A 428 RFSSRFKEGEVTTMNHEDLSLLK-EILKRPVDPIRAAGLHPTAEQIEMFA 476 (677)
T ss_dssp CTTSSCSSEEEEESSTTHHHHHH-HHHHSCCCCCCCEEECCCHHHHHHHH
T ss_pred CCCCCCCCEEEEEEecchHHHHH-HHHhcCcchhhhccCCChHHHHHHHh
Confidence 999 58999999887 443 46778889999988877777777665
No 32
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.8e-34 Score=363.17 Aligned_cols=317 Identities=17% Similarity=0.169 Sum_probs=189.5
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccC----CCEEEEeccHHHHHHHHHHHHHHHhCCccCCe
Q 001046 524 PIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTT----RGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEE 599 (1176)
Q Consensus 524 Pi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~----~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~ 599 (1176)
.++++|.++++.+..++++|+++|||||||+++.+++++..... +++++|++|+++|+.|++..+.+.+ ...|..
T Consensus 13 ~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~-~~~~~~ 91 (696)
T 2ykg_A 13 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYF-ERHGYR 91 (696)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHT-TTTTCC
T ss_pred CccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHh-ccCCce
Confidence 46789999999999999999999999999999999888754332 2689999999999999998776654 223444
Q ss_pred eEEEeeccccc------CCCceEEEeChHHHHHHHhhCC--CCCCCceEEEcCCCcCCCchhHHHHHHHHHHh------h
Q 001046 600 VGYAIRFEDCT------GPDTVIKYMTDGMLLREILIDD--NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK------R 665 (1176)
Q Consensus 600 vGy~ir~~~~~------~~~t~I~~~T~g~Llr~l~~~~--~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~------~ 665 (1176)
++......... ...++|+|+|+|+|++.+.... .+.++++|||||||+..-... +..++...+. .
T Consensus 92 v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~-~~~i~~~~l~~~~~~~~ 170 (696)
T 2ykg_A 92 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHP-YNMIMFNYLDQKLGGSS 170 (696)
T ss_dssp EEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCccc-HHHHHHHHHHHhhcccC
Confidence 44332222111 1357999999999999988764 488999999999997543332 3333332222 1
Q ss_pred CCCccEEEEcCCCC-------H---HHHHhhh--cCCCeEecCCce---------eeeEEEEec-CCCc-----------
Q 001046 666 RPDLRLIVTSATLD-------A---EKFSGYF--FNCNIFTIPGRT---------FPVEILYTK-QPES----------- 712 (1176)
Q Consensus 666 r~~~kvIlmSATl~-------~---~~~~~~f--~~~~v~~i~gr~---------~pv~~~~~~-~~~~----------- 712 (1176)
.+..++|+||||+. . +.+..++ .+..++...... .|...+... ....
T Consensus 171 ~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~ 250 (696)
T 2ykg_A 171 GPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 250 (696)
T ss_dssp SCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHH
Confidence 46789999999996 2 2222222 112221111000 010000000 0000
Q ss_pred --------------------------------------------------------------------------------
Q 001046 713 -------------------------------------------------------------------------------- 712 (1176)
Q Consensus 713 -------------------------------------------------------------------------------- 712 (1176)
T Consensus 251 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~ 330 (696)
T 2ykg_A 251 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 330 (696)
T ss_dssp HHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhh
Confidence
Q ss_pred --------------------h-------------------------hHHHHHHHHHHHHh----cCCCCCEEEEeCCHHH
Q 001046 713 --------------------D-------------------------YLDASLITVLQIHL----TEPEGDILLFLTGQEE 743 (1176)
Q Consensus 713 --------------------~-------------------------~~~~~l~~v~~i~~----~~~~g~iLVFl~~~~e 743 (1176)
+ .....+..+..+.. ..+++++||||+++..
T Consensus 331 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~ 410 (696)
T 2ykg_A 331 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 410 (696)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHH
Confidence 0 00011112222221 2356899999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCeEEEEe--------cCCCCHHHHHhhcCCCCC-CCceEEEEcchhhhccCCCCeeEEEe
Q 001046 744 IDFACQSLYERMKGLGKNVPELIILPV--------YSALPSEMQSRIFDPAPP-GKRKVVVATNIAEASLTIDGIFYVID 814 (1176)
Q Consensus 744 i~~l~~~L~~~~~~l~~~~~~~~v~~l--------hs~l~~~~r~~i~~~f~~-g~~kVlVATniae~GIdIp~V~~VId 814 (1176)
++.+++.|.+. + ....+.+..+ ||+|++++|..+++.|+. |.++|||||+++++|||||+|++||+
T Consensus 411 ~~~l~~~L~~~----~-~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~ 485 (696)
T 2ykg_A 411 VDALKNWIEGN----P-KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL 485 (696)
T ss_dssp HHHHHHHHHHC----T-TCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEE
T ss_pred HHHHHHHHHhC----C-CccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEE
Confidence 99999988763 1 1122555666 679999999999999998 99999999999999999999999999
Q ss_pred CCcccceeccCCCCCccccccccCHHHHHHHhcccCCCCCcEEEEecChHHH
Q 001046 815 PGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAY 866 (1176)
Q Consensus 815 ~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g~G~c~~L~t~~~~ 866 (1176)
+++ |.|..+|+||+|| ||..+|.||.|+++.+.
T Consensus 486 ~d~------------------p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 486 YEY------------------VGNVIKMIQTRGR-GRARGSKCFLLTSNAGV 518 (696)
T ss_dssp ESC------------------C--CCCC----------CCCEEEEEESCHHH
T ss_pred eCC------------------CCCHHHHHHhhcc-CcCCCceEEEEecCCCH
Confidence 998 8899999999999 99999999999998766
No 33
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.7e-34 Score=352.38 Aligned_cols=302 Identities=17% Similarity=0.200 Sum_probs=226.1
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEEEe
Q 001046 525 IYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAI 604 (1176)
Q Consensus 525 i~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy~i 604 (1176)
.+++|.++++++.+++++++++|||||||+++.++++.. .+.++|+.|+++|+.++..++.. +|.. +++..
T Consensus 26 ~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~----~g~~lvi~P~~aL~~q~~~~l~~-~gi~----~~~l~ 96 (523)
T 1oyw_A 26 FRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL----NGLTVVVSPLISLMKDQVDQLQA-NGVA----AACLN 96 (523)
T ss_dssp CCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS----SSEEEEECSCHHHHHHHHHHHHH-TTCC----EEEEC
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh----CCCEEEECChHHHHHHHHHHHHH-cCCc----EEEEe
Confidence 467899999999999999999999999999887777643 47899999999999999998754 4433 33211
Q ss_pred ecc----------cccCCCceEEEeChHHHHHHHhhC-CCCCCCceEEEcCCCcCC---CchhHHHHHHHHHHhhCCCcc
Q 001046 605 RFE----------DCTGPDTVIKYMTDGMLLREILID-DNLSQYSVIMLDEAHERT---IHTDVLFGLLKQLVKRRPDLR 670 (1176)
Q Consensus 605 r~~----------~~~~~~t~I~~~T~g~Llr~l~~~-~~L~~~s~IIiDEaHeR~---~~~d~ll~llk~~~~~r~~~k 670 (1176)
... .......+|+|+||++|+.....+ ....++++|||||||+.+ ......+..+..+....|+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ 176 (523)
T 1oyw_A 97 STQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLP 176 (523)
T ss_dssp TTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSC
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCC
Confidence 111 111245789999999985321111 134789999999999643 222223344555666778999
Q ss_pred EEEEcCCCCHH---HHHhhhc-CCCeEecCCceeeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHH
Q 001046 671 LIVTSATLDAE---KFSGYFF-NCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDF 746 (1176)
Q Consensus 671 vIlmSATl~~~---~~~~~f~-~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~ 746 (1176)
+|+||||++.. .+..++. ..+.+.+.+...|. +.|......+.. ..++.+.....++++||||+++++++.
T Consensus 177 ~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~-l~~~v~~~~~~~----~~l~~~l~~~~~~~~IVf~~sr~~~e~ 251 (523)
T 1oyw_A 177 FMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPN-IRYMLMEKFKPL----DQLMRYVQEQRGKSGIIYCNSRAKVED 251 (523)
T ss_dssp EEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTT-EEEEEEECSSHH----HHHHHHHHHTTTCCEEEECSSHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCc-eEEEEEeCCCHH----HHHHHHHHhcCCCcEEEEeCCHHHHHH
Confidence 99999999754 4455553 34444444433222 222211112222 223333333467799999999999999
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCC
Q 001046 747 ACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPK 826 (1176)
Q Consensus 747 l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~ 826 (1176)
+++.|.+. ++.+.++||+|+.++|..+++.|..|..+|||||+++++|||+|+|++||++++
T Consensus 252 l~~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~--------- 313 (523)
T 1oyw_A 252 TAARLQSK---------GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI--------- 313 (523)
T ss_dssp HHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSC---------
T ss_pred HHHHHHHC---------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECC---------
Confidence 99999763 567899999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccCHHHHHHHhcccCCCC-CcEEEEecChHHHh
Q 001046 827 QGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESAYR 867 (1176)
Q Consensus 827 ~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~~~ 867 (1176)
|.|.++|+||+|||||.| +|.|+.+|+..+..
T Consensus 314 ---------p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~ 346 (523)
T 1oyw_A 314 ---------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (523)
T ss_dssp ---------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred ---------CCCHHHHHHHhccccCCCCCceEEEEeCHHHHH
Confidence 999999999999999999 89999999988764
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-35 Score=359.04 Aligned_cols=316 Identities=16% Similarity=0.202 Sum_probs=207.5
Q ss_pred chHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHHHHHHHhcccC--CCEEEEeccHHHHHHHHHHHHHHHhCC-ccCCe
Q 001046 525 IYKLKKELIQAVHDN--QVLVVIGETGSGKTTQVTQYLAEAGYTT--RGKIGCTQPRRVAAMSVAKRVAEEFGC-RLGEE 599 (1176)
Q Consensus 525 i~~~q~~ii~ai~~~--~~vIv~apTGSGKTt~~~~~lle~~~~~--~~~Ilv~~PrR~lA~qva~rva~e~g~-~~G~~ 599 (1176)
.+++|.++++++.++ ++++++||||||||+++.++++...... +++++|++|+++|+.|+++++....+. .+...
T Consensus 142 p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~ 221 (508)
T 3fho_A 142 XXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTA 221 (508)
T ss_dssp CCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEE
T ss_pred cHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEE
Confidence 567799999999988 9999999999999999999888864433 348999999999999999988765432 22222
Q ss_pred eEEEeecccccCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCC
Q 001046 600 VGYAIRFEDCTGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATL 678 (1176)
Q Consensus 600 vGy~ir~~~~~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl 678 (1176)
+++.............|+++|++.|++.+.... .+.++++|||||||.......+...+........++.++|+||||+
T Consensus 222 ~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~ 301 (508)
T 3fho_A 222 FGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATF 301 (508)
T ss_dssp C----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred EEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCC
Confidence 233222222333468999999999999887665 5889999999999964332322222222222345689999999999
Q ss_pred C--HHHHHhhhcCCC-eEecCCceeee---EEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHH
Q 001046 679 D--AEKFSGYFFNCN-IFTIPGRTFPV---EILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLY 752 (1176)
Q Consensus 679 ~--~~~~~~~f~~~~-v~~i~gr~~pv---~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~ 752 (1176)
+ .+.+...+...+ .+.+.....+. ...+...... ......+..+......+++||||++++.++.++..|.
T Consensus 302 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~ 378 (508)
T 3fho_A 302 SERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSE---EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMT 378 (508)
T ss_dssp STHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--C---HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHT
T ss_pred CHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCch---HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHH
Confidence 6 556666555443 34343333221 2222222111 2233334444445567899999999999999988885
Q ss_pred HHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCCccc
Q 001046 753 ERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSL 832 (1176)
Q Consensus 753 ~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l 832 (1176)
+ .++.+..+||+++..+|..+++.|+.|..+|||||+++++|||+|++++||+++.....
T Consensus 379 ~---------~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~----------- 438 (508)
T 3fho_A 379 A---------DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQ----------- 438 (508)
T ss_dssp T---------TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC------------
T ss_pred h---------CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcc-----------
Confidence 4 25668899999999999999999999999999999999999999999999998871000
Q ss_pred cccccCHHHHHHHhcccCCCC-CcEEEEecChH
Q 001046 833 VITPISQASAKQRAGRAGRTG-PGKCYRLYTES 864 (1176)
Q Consensus 833 ~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~ 864 (1176)
....|..+|+||+|||||.| +|.|+.+++..
T Consensus 439 -~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 439 -AGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp -----CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred -cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 00178899999999999999 89999999854
No 35
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.2e-34 Score=344.05 Aligned_cols=289 Identities=20% Similarity=0.183 Sum_probs=211.1
Q ss_pred HHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEEEeecc-cccCCC
Q 001046 535 AVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFE-DCTGPD 613 (1176)
Q Consensus 535 ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~-~~~~~~ 613 (1176)
++.++++++++||||||||+++.++++......+.+++|++||++||.|+++.+. +..+++....- ...+++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~-------~~~v~~~~~~~~~v~Tp~ 76 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH-------GLDVKFHTQAFSAHGSGR 76 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TSCEEEESSCCCCCCCSS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHh-------cCCeEEecccceeccCCc
Confidence 3578999999999999999998888877655556789999999999999998764 22355544332 345567
Q ss_pred ceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCCCHHHHHhhhc-CCCe
Q 001046 614 TVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFF-NCNI 692 (1176)
Q Consensus 614 t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl~~~~~~~~f~-~~~v 692 (1176)
..+.+++.+.+...++....+.++++|||||||..+...+..++.+..+.. .++.++|+||||++... ..+.. ..++
T Consensus 77 ~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~~-~~~~~~~~~~ 154 (440)
T 1yks_A 77 EVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPGTS-DEFPHSNGEI 154 (440)
T ss_dssp CCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCCCSSCE
T ss_pred cceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCchh-hhhhhcCCCe
Confidence 778888999988888888889999999999999765555566666666554 46799999999996431 11111 1111
Q ss_pred EecCCceeeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 001046 693 FTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYS 772 (1176)
Q Consensus 693 ~~i~gr~~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs 772 (1176)
. .+...+........+ ..+. ..++++||||+++++++.+++.|.+. ++.+..+||
T Consensus 155 ~-------~~~~~~~~~~~~~~~----~~l~-----~~~~~~lVF~~s~~~a~~l~~~L~~~---------~~~v~~lhg 209 (440)
T 1yks_A 155 E-------DVQTDIPSEPWNTGH----DWIL-----ADKRPTAWFLPSIRAANVMAASLRKA---------GKSVVVLNR 209 (440)
T ss_dssp E-------EEECCCCSSCCSSSC----HHHH-----HCCSCEEEECSCHHHHHHHHHHHHHT---------TCCEEECCS
T ss_pred e-------EeeeccChHHHHHHH----HHHH-----hcCCCEEEEeCCHHHHHHHHHHHHHc---------CCCEEEecc
Confidence 1 111111111111111 1111 23689999999999999999998762 567899999
Q ss_pred CCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceec-cCCCCCccccccccCHHHHHHHhcccCC
Q 001046 773 ALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVY-NPKQGLDSLVITPISQASAKQRAGRAGR 851 (1176)
Q Consensus 773 ~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~y-d~~~g~~~l~~~p~S~as~~QR~GRAGR 851 (1176)
++|..+++.|++|..+|||||+++++||||| +++|||+|+.+..+| ++..++......|.+.++|+||+|||||
T Consensus 210 ----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR 284 (440)
T 1yks_A 210 ----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGR 284 (440)
T ss_dssp ----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred ----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCC
Confidence 4688999999999999999999999999999 999999999888777 4555666666779999999999999999
Q ss_pred CC--CcEEEEecC
Q 001046 852 TG--PGKCYRLYT 862 (1176)
Q Consensus 852 ~g--~G~c~~L~t 862 (1176)
.| +|.||.||+
T Consensus 285 ~g~~~g~~~~l~~ 297 (440)
T 1yks_A 285 NPNRDGDSYYYSE 297 (440)
T ss_dssp CTTCCCEEEEECS
T ss_pred CCCCCceEEEEec
Confidence 84 899999984
No 36
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.6e-34 Score=339.68 Aligned_cols=299 Identities=14% Similarity=0.103 Sum_probs=213.9
Q ss_pred cCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeE
Q 001046 522 SLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVG 601 (1176)
Q Consensus 522 ~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vG 601 (1176)
....+++|.++++.+.++++++++||||||||+++..+++... ..+++++|++|+++||.|+++++... +. .|..++
T Consensus 19 ~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~-~~-~~~~v~ 95 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQKL-AD-EKVKIF 95 (414)
T ss_dssp SSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHH-CC-SSCCEE
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHHHHHH-cc-CCceEE
Confidence 4556799999999999999999999999999997777666543 45678999999999999999998764 33 555555
Q ss_pred EEeecccc----------cCCCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCc--------------CCCchhHHHH
Q 001046 602 YAIRFEDC----------TGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHE--------------RTIHTDVLFG 657 (1176)
Q Consensus 602 y~ir~~~~----------~~~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHe--------------R~~~~d~ll~ 657 (1176)
........ .....+|+|+||+.|++.+.. ..+.++++|||||||. .+...+.+..
T Consensus 96 ~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~ 174 (414)
T 3oiy_A 96 GFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRK 174 (414)
T ss_dssp ECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHH
T ss_pred EEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHH
Confidence 43322211 112489999999999877653 4577999999999994 2222222222
Q ss_pred HHHHHH--------hhCCCccEEEEcCCC-CH---HHHHhhhcCCCeEecCCceeeeEEEEecCCCchhHHHHHHHHHHH
Q 001046 658 LLKQLV--------KRRPDLRLIVTSATL-DA---EKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQI 725 (1176)
Q Consensus 658 llk~~~--------~~r~~~kvIlmSATl-~~---~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~l~~v~~i 725 (1176)
++..+. ...++.++|+||||+ +. ..+...+.+..+.........+...|......+. +..++..
T Consensus 175 i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----l~~~l~~ 250 (414)
T 3oiy_A 175 AFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEK----LVELLEI 250 (414)
T ss_dssp HHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCCCCCCCSEEEEEESSCCHHH----HHHHHHH
T ss_pred HHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCccccccccchheeeccCHHHH----HHHHHHH
Confidence 232221 012688999999995 32 1333333332222222222234444544322222 2222221
Q ss_pred HhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEE-EecCCCCHHHHHhhcCCCCCCCceEEEE----cchh
Q 001046 726 HLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIIL-PVYSALPSEMQSRIFDPAPPGKRKVVVA----TNIA 800 (1176)
Q Consensus 726 ~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~-~lhs~l~~~~r~~i~~~f~~g~~kVlVA----Tnia 800 (1176)
.++++||||+++..++.++..|.+. ++.+. .+||. +|. ++.|+.|..+|||| |+++
T Consensus 251 ----~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~ 311 (414)
T 3oiy_A 251 ----FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKL 311 (414)
T ss_dssp ----HCSSEEEEESSHHHHHHHHHHHHHT---------TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCC
T ss_pred ----cCCCEEEEECCHHHHHHHHHHHHHc---------CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchh
Confidence 2489999999999999999999762 56676 88884 333 89999999999999 9999
Q ss_pred hhccCCCC-eeEEEeCCcccceeccCCCCCccccccc--cCHHHHHHHhcccCCCC-----CcEEEEecChHH
Q 001046 801 EASLTIDG-IFYVIDPGFAKQNVYNPKQGLDSLVITP--ISQASAKQRAGRAGRTG-----PGKCYRLYTESA 865 (1176)
Q Consensus 801 e~GIdIp~-V~~VId~g~~k~~~yd~~~g~~~l~~~p--~S~as~~QR~GRAGR~g-----~G~c~~L~t~~~ 865 (1176)
++|||+|+ |++||++|+ | .|..+|+||+|||||.| +|.||.|+.+..
T Consensus 312 ~~GiDip~~v~~VI~~~~------------------p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~~ 366 (414)
T 3oiy_A 312 TRGVDLPERIKYVIFWGT------------------PSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEE 366 (414)
T ss_dssp CCCCCCTTTCCEEEEESC------------------CTTTCHHHHHHHHGGGCCEETTEECCEEEEEECCCHH
T ss_pred hccCccccccCEEEEECC------------------CCCCCHHHHHHHhCccccCCCCCCcceEEEEEEccHH
Confidence 99999999 999999999 8 89999999999999987 699999995443
No 37
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=9.5e-34 Score=352.81 Aligned_cols=288 Identities=19% Similarity=0.244 Sum_probs=218.9
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEEEeec-ccccCCCc
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRF-EDCTGPDT 614 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~-~~~~~~~t 614 (1176)
+.++++++++||||||||+++.++++......+.+++|++|||+||.|+++.+.. ..+++.... .....++.
T Consensus 238 l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~-------~~i~~~~~~l~~v~tp~~ 310 (673)
T 2wv9_A 238 LKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRG-------LPVRYLTPAVQREHSGNE 310 (673)
T ss_dssp GSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-------SCCEECCC---CCCCSCC
T ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhc-------CCeeeecccccccCCHHH
Confidence 3489999999999999999988888776555667899999999999999987641 123443332 22456677
Q ss_pred eEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCCCHHHHHhhh-cCCCeE
Q 001046 615 VIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYF-FNCNIF 693 (1176)
Q Consensus 615 ~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl~~~~~~~~f-~~~~v~ 693 (1176)
.+.+++.+.+.+.++.+..+.++++|||||||+.+...+..+..++.+.. .++.++|+||||++... ..+. ...++.
T Consensus 311 ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~i-~~~~~~~~~i~ 388 (673)
T 2wv9_A 311 IVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVE-AGEAAAIFMTATPPGTS-DPFPDTNSPVH 388 (673)
T ss_dssp CEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCCCSSCEE
T ss_pred HHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhcc-ccCCcEEEEcCCCChhh-hhhcccCCceE
Confidence 88899999999999888889999999999999876666677777776654 36789999999996331 1111 122222
Q ss_pred ecCCceeeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 001046 694 TIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSA 773 (1176)
Q Consensus 694 ~i~gr~~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~ 773 (1176)
.+. ...+...+ ...+.. .....+++||||+++++++.+++.|.+. ++.+..+||.
T Consensus 389 ~v~----------~~~~~~~~-~~~l~~-----l~~~~~~~lVF~~s~~~~e~la~~L~~~---------g~~v~~lHg~ 443 (673)
T 2wv9_A 389 DVS----------SEIPDRAW-SSGFEW-----ITDYAGKTVWFVASVKMSNEIAQCLQRA---------GKRVIQLNRK 443 (673)
T ss_dssp EEE----------CCCCSSCC-SSCCHH-----HHSCCSCEEEECSSHHHHHHHHHHHHTT---------TCCEEEECSS
T ss_pred EEe----------eecCHHHH-HHHHHH-----HHhCCCCEEEEECCHHHHHHHHHHHHhC---------CCeEEEeChH
Confidence 221 11111111 001111 1235789999999999999999988652 5678999994
Q ss_pred CCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccce--eccCCCCCccccccccCHHHHHHHhcccCC
Q 001046 774 LPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQN--VYNPKQGLDSLVITPISQASAKQRAGRAGR 851 (1176)
Q Consensus 774 l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~--~yd~~~g~~~l~~~p~S~as~~QR~GRAGR 851 (1176)
+|..+++.|+.|.++|||||+++++||||| +++|||+|..... .||+..++..+...|.|.++|+||+|||||
T Consensus 444 ----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR 518 (673)
T 2wv9_A 444 ----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGR 518 (673)
T ss_dssp ----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSC
T ss_pred ----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCC
Confidence 788999999999999999999999999999 9999999976543 467776666667789999999999999999
Q ss_pred C-C-CcEEEEecC
Q 001046 852 T-G-PGKCYRLYT 862 (1176)
Q Consensus 852 ~-g-~G~c~~L~t 862 (1176)
. + +|.||.||.
T Consensus 519 ~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 519 NPSQIGDEYHYGG 531 (673)
T ss_dssp CSSCCCEEEEECS
T ss_pred CCCCCCEEEEEEe
Confidence 9 4 899999975
No 38
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=8.1e-33 Score=339.59 Aligned_cols=324 Identities=15% Similarity=0.153 Sum_probs=177.8
Q ss_pred cCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccC----CCEEEEeccHHHHHHHHHHHHHHHhCCccC
Q 001046 522 SLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTT----RGKIGCTQPRRVAAMSVAKRVAEEFGCRLG 597 (1176)
Q Consensus 522 ~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~----~~~Ilv~~PrR~lA~qva~rva~e~g~~~G 597 (1176)
.+.++++|.++++.+..++++++++|||||||.++..+++...... +++++|++|+++|+.|++..+...+.. .|
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~ 83 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-QG 83 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG-GT
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc-cC
Confidence 3567899999999999999999999999999999988887754332 568999999999999999988765521 13
Q ss_pred CeeEEEeecccc------cCCCceEEEeChHHHHHHHhhCC--CCCCCceEEEcCCCcCCCchhHHHHHHHHHHhh----
Q 001046 598 EEVGYAIRFEDC------TGPDTVIKYMTDGMLLREILIDD--NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKR---- 665 (1176)
Q Consensus 598 ~~vGy~ir~~~~------~~~~t~I~~~T~g~Llr~l~~~~--~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~---- 665 (1176)
..++........ ......|+|+|+++|++.+.... .+.++++|||||||... ....+..++..+...
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~-~~~~~~~~~~~~~~~~~~~ 162 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT-GNHPYNVLMTRYLEQKFNS 162 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCS-TTSHHHHHHHHHHHHHHCC
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccC-CcchHHHHHHHHHHhhhcc
Confidence 333321111111 11347899999999999887654 58899999999999543 222344444444332
Q ss_pred -CCCccEEEEcCCCCH----------HH---HHhhhcCCCeEecCCc---------eeeeEEE-EecC-CCch-------
Q 001046 666 -RPDLRLIVTSATLDA----------EK---FSGYFFNCNIFTIPGR---------TFPVEIL-YTKQ-PESD------- 713 (1176)
Q Consensus 666 -r~~~kvIlmSATl~~----------~~---~~~~f~~~~v~~i~gr---------~~pv~~~-~~~~-~~~~------- 713 (1176)
.+..++|+||||+.. +. +...+ +...+..... ..|.... .... ....
T Consensus 163 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 163 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-DIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp ---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHH-TCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhc-CCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 467899999999932 11 11222 2222222110 0111111 1110 0000
Q ss_pred ---------------------------------hH---------------------------------------------
Q 001046 714 ---------------------------------YL--------------------------------------------- 715 (1176)
Q Consensus 714 ---------------------------------~~--------------------------------------------- 715 (1176)
++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 00
Q ss_pred -------------------------------------------------HHHHHHHHHH----HhcCCCCCEEEEeCCHH
Q 001046 716 -------------------------------------------------DASLITVLQI----HLTEPEGDILLFLTGQE 742 (1176)
Q Consensus 716 -------------------------------------------------~~~l~~v~~i----~~~~~~g~iLVFl~~~~ 742 (1176)
...+..+..+ ....+++++||||+++.
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 0001111111 11256789999999999
Q ss_pred HHHHHHHHHHHHH--hccC-CCCCCeEEEEecCCCCHHHHHhhcCCCCC-CCceEEEEcchhhhccCCCCeeEEEeCCcc
Q 001046 743 EIDFACQSLYERM--KGLG-KNVPELIILPVYSALPSEMQSRIFDPAPP-GKRKVVVATNIAEASLTIDGIFYVIDPGFA 818 (1176)
Q Consensus 743 ei~~l~~~L~~~~--~~l~-~~~~~~~v~~lhs~l~~~~r~~i~~~f~~-g~~kVlVATniae~GIdIp~V~~VId~g~~ 818 (1176)
.++.++..|.+.. ..+. ....+.....+||+|++++|..+++.|+. |..+|||||+++++|||+|+|++||++++
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~- 480 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY- 480 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETC-
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC-
Confidence 9999988886420 0000 00113345567899999999999999999 99999999999999999999999999998
Q ss_pred cceeccCCCCCccccccccCHHHHHHHhcccCCCCCcEEEEecChHHHh
Q 001046 819 KQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYR 867 (1176)
Q Consensus 819 k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g~G~c~~L~t~~~~~ 867 (1176)
|.|...|+||+|| ||..+|.||.|+++....
T Consensus 481 -----------------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 481 -----------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 511 (556)
T ss_dssp -----------------CSCHHHHHHC---------CCEEEEESCHHHH
T ss_pred -----------------CCCHHHHHHhcCC-CCCCCceEEEEEeCcchH
Confidence 9999999999999 999999999999987764
No 39
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=6.5e-33 Score=339.93 Aligned_cols=324 Identities=15% Similarity=0.171 Sum_probs=202.4
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccC----CCEEEEeccHHHHHHHHHHHHHHHhCCccCC
Q 001046 523 LPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTT----RGKIGCTQPRRVAAMSVAKRVAEEFGCRLGE 598 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~----~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~ 598 (1176)
+.++++|.++++.+..++++++++|||||||.++..++++..... +++++|++|+++|+.|++..+...+.. .|.
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~ 81 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER-LGY 81 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT-TTC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc-CCc
Confidence 567899999999999999999999999999999998888764432 568999999999999999988765521 233
Q ss_pred eeEEEeecccccC------CCceEEEeChHHHHHHHhhCC--CCCCCceEEEcCCCcCCCchhHHHHHHHHHHhh-----
Q 001046 599 EVGYAIRFEDCTG------PDTVIKYMTDGMLLREILIDD--NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKR----- 665 (1176)
Q Consensus 599 ~vGy~ir~~~~~~------~~t~I~~~T~g~Llr~l~~~~--~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~----- 665 (1176)
.++.......... .+..|+|+|+++|++.+.... .+.++++|||||||...-.. .+..++...+..
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~-~~~~~~~~~~~~~~~~~ 160 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNH-PYNQIMFRYLDHKLGES 160 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTC-HHHHHHHHHHHHHTSSC
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcc-hHHHHHHHHHHhhhccc
Confidence 3443222221111 247899999999999887655 57889999999999643332 233433333332
Q ss_pred -CCCccEEEEcCCCCH----------HHHHhhh--cCCCeEecCCc---------eeeeEEE-EecCCC-ch--------
Q 001046 666 -RPDLRLIVTSATLDA----------EKFSGYF--FNCNIFTIPGR---------TFPVEIL-YTKQPE-SD-------- 713 (1176)
Q Consensus 666 -r~~~kvIlmSATl~~----------~~~~~~f--~~~~v~~i~gr---------~~pv~~~-~~~~~~-~~-------- 713 (1176)
.++.++|+||||+.. +.+...+ .+++.+..... ..|.... ...... ..
T Consensus 161 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
T 3tbk_A 161 RDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQL 240 (555)
T ss_dssp CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred cCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHH
Confidence 267899999999932 2221111 22233322211 0111111 111000 00
Q ss_pred ---------------------------------hH---------------------------------------------
Q 001046 714 ---------------------------------YL--------------------------------------------- 715 (1176)
Q Consensus 714 ---------------------------------~~--------------------------------------------- 715 (1176)
++
T Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (555)
T 3tbk_A 241 MKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDA 320 (555)
T ss_dssp HHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 00
Q ss_pred -------------------------------------------------HHHHHHHH----HHHhcCCCCCEEEEeCCHH
Q 001046 716 -------------------------------------------------DASLITVL----QIHLTEPEGDILLFLTGQE 742 (1176)
Q Consensus 716 -------------------------------------------------~~~l~~v~----~i~~~~~~g~iLVFl~~~~ 742 (1176)
...+..+. ......+.+++||||+++.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~ 400 (555)
T 3tbk_A 321 QMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRA 400 (555)
T ss_dssp CHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHH
T ss_pred hHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHH
Confidence 00011111 1112245689999999999
Q ss_pred HHHHHHHHHHHHHhccC---CCCCCeEEEEecCCCCHHHHHhhcCCCCC-CCceEEEEcchhhhccCCCCeeEEEeCCcc
Q 001046 743 EIDFACQSLYERMKGLG---KNVPELIILPVYSALPSEMQSRIFDPAPP-GKRKVVVATNIAEASLTIDGIFYVIDPGFA 818 (1176)
Q Consensus 743 ei~~l~~~L~~~~~~l~---~~~~~~~v~~lhs~l~~~~r~~i~~~f~~-g~~kVlVATniae~GIdIp~V~~VId~g~~ 818 (1176)
.++.++..|.+.-.... ....+.....+||+|++++|..+++.|+. |..+|||||+++++|||+|+|++||++++
T Consensus 401 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~- 479 (555)
T 3tbk_A 401 LVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEY- 479 (555)
T ss_dssp HHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESC-
T ss_pred HHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCC-
Confidence 99999999876310000 00112345566889999999999999999 99999999999999999999999999998
Q ss_pred cceeccCCCCCccccccccCHHHHHHHhcccCCCCCcEEEEecChHHHh
Q 001046 819 KQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYR 867 (1176)
Q Consensus 819 k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g~G~c~~L~t~~~~~ 867 (1176)
|.|..+|+||+|| ||..+|.||.|+++....
T Consensus 480 -----------------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 480 -----------------VGNVIKMIQTRGR-GRARDSKCFLLTSSADVI 510 (555)
T ss_dssp -----------------CSSCCCEECSSCC-CTTTSCEEEEEESCHHHH
T ss_pred -----------------CCCHHHHHHhcCc-CcCCCceEEEEEcCCCHH
Confidence 8899999999999 999999999999987653
No 40
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.3e-33 Score=331.95 Aligned_cols=316 Identities=17% Similarity=0.161 Sum_probs=225.8
Q ss_pred cCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeE
Q 001046 522 SLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVG 601 (1176)
Q Consensus 522 ~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vG 601 (1176)
.++++++|.+++..+..+ ++++++|||+|||+++..++.......+++++|++|+++|+.|+++.+.+.++.... .++
T Consensus 7 ~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~-~v~ 84 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPE-KIV 84 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGG-GEE
T ss_pred CCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchh-heE
Confidence 467899999999999998 999999999999999999888764445678999999999999999999887765211 222
Q ss_pred EEeeccc-----ccCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEc
Q 001046 602 YAIRFED-----CTGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTS 675 (1176)
Q Consensus 602 y~ir~~~-----~~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmS 675 (1176)
....... .......|+++|++.|.+.+.... .+.++++|||||||. .........+++.+....+..++++||
T Consensus 85 ~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~-~~~~~~~~~~~~~~~~~~~~~~~l~lT 163 (494)
T 1wp9_A 85 ALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHR-AVGNYAYVFIAREYKRQAKNPLVIGLT 163 (494)
T ss_dssp EECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGG-CSTTCHHHHHHHHHHHHCSSCCEEEEE
T ss_pred EeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcc-cCCCCcHHHHHHHHHhcCCCCeEEEEe
Confidence 1111110 001256899999999999887654 588999999999994 332223344455555566788999999
Q ss_pred CCCC--HHHHHhhh---cCCCeEec-CC------ceeeeEEEE--ecCCCc-----------------------------
Q 001046 676 ATLD--AEKFSGYF---FNCNIFTI-PG------RTFPVEILY--TKQPES----------------------------- 712 (1176)
Q Consensus 676 ATl~--~~~~~~~f---~~~~v~~i-~g------r~~pv~~~~--~~~~~~----------------------------- 712 (1176)
||+. .+.+..++ ...++... .. ...+....+ ...+..
T Consensus 164 aTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (494)
T 1wp9_A 164 ASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSS 243 (494)
T ss_dssp SCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCC
T ss_pred cCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 9995 44444433 21111100 00 000111111 000000
Q ss_pred -------------------------------------------------------hhH----------------------
Q 001046 713 -------------------------------------------------------DYL---------------------- 715 (1176)
Q Consensus 713 -------------------------------------------------------~~~---------------------- 715 (1176)
.|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (494)
T 1wp9_A 244 PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDK 323 (494)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSH
T ss_pred CCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhH
Confidence 000
Q ss_pred ------------------HHHHHHHHHHHhc----CCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecC-
Q 001046 716 ------------------DASLITVLQIHLT----EPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYS- 772 (1176)
Q Consensus 716 ------------------~~~l~~v~~i~~~----~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs- 772 (1176)
...+..+..+... .+++++||||+++..++.++..|.+. ++.+..+||
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~ 394 (494)
T 1wp9_A 324 RMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD---------GIKAKRFVGQ 394 (494)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT---------TCCEEEECCS
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc---------CCCcEEEecc
Confidence 0011111222111 46889999999999999999988763 567889999
Q ss_pred -------CCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHH
Q 001046 773 -------ALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQR 845 (1176)
Q Consensus 773 -------~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR 845 (1176)
+++..+|..+++.|..|..+|||||+++++|||+|++++||+++. |.+.+.|.||
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~------------------~~~~~~~~Qr 456 (494)
T 1wp9_A 395 ASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP------------------VPSAIRSIQR 456 (494)
T ss_dssp SCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSC------------------CHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCC------------------CCCHHHHHHH
Confidence 999999999999999999999999999999999999999999988 8899999999
Q ss_pred hcccCCCCCcEEEEecChHHHh
Q 001046 846 AGRAGRTGPGKCYRLYTESAYR 867 (1176)
Q Consensus 846 ~GRAGR~g~G~c~~L~t~~~~~ 867 (1176)
+|||||.|+|.||+|+++...+
T Consensus 457 ~GR~~R~g~g~~~~l~~~~t~e 478 (494)
T 1wp9_A 457 RGRTGRHMPGRVIILMAKGTRD 478 (494)
T ss_dssp HTTSCSCCCSEEEEEEETTSHH
T ss_pred HhhccCCCCceEEEEEecCCHH
Confidence 9999999999999999987654
No 41
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=355.91 Aligned_cols=321 Identities=17% Similarity=0.161 Sum_probs=206.8
Q ss_pred HhcCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc-----CCCEEEEeccHHHHHHHH-HHHHHHHhC
Q 001046 520 RQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT-----TRGKIGCTQPRRVAAMSV-AKRVAEEFG 593 (1176)
Q Consensus 520 r~~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~-----~~~~Ilv~~PrR~lA~qv-a~rva~e~g 593 (1176)
+..+.++++|.++++.+.+++++||++|||||||+++.+++++.... .+++++|++|+++|+.|+ +..+.+.++
T Consensus 3 ~~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 3 GAMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp ----CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CCCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 35678999999999999999999999999999999998888764222 226899999999999999 998888776
Q ss_pred C--ccCCeeEEEeecc--cccCCCceEEEeChHHHHHHHhhC-------CCCCCCceEEEcCCCcC---CCchhHHHHHH
Q 001046 594 C--RLGEEVGYAIRFE--DCTGPDTVIKYMTDGMLLREILID-------DNLSQYSVIMLDEAHER---TIHTDVLFGLL 659 (1176)
Q Consensus 594 ~--~~G~~vGy~ir~~--~~~~~~t~I~~~T~g~Llr~l~~~-------~~L~~~s~IIiDEaHeR---~~~~d~ll~ll 659 (1176)
. .++...|.....+ .......+|+|+|+++|++.+... ..+.++++|||||||.- .....++..++
T Consensus 83 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp TTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred cCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 3 3333333221111 011146899999999999887432 26788999999999941 22222222222
Q ss_pred HHHH-hhC---------CCccEEEEcCCCCHH----------H---HHhhhcCCCeEecCCc--------eeeeEEE-Ee
Q 001046 660 KQLV-KRR---------PDLRLIVTSATLDAE----------K---FSGYFFNCNIFTIPGR--------TFPVEIL-YT 707 (1176)
Q Consensus 660 k~~~-~~r---------~~~kvIlmSATl~~~----------~---~~~~f~~~~v~~i~gr--------~~pv~~~-~~ 707 (1176)
.... ... +..++|+||||+... . +...+....+...... ..|...+ +.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 2211 122 778999999999641 1 2222222122111111 1111111 11
Q ss_pred cCCC------------------------ch--------h-----------------------------------------
Q 001046 708 KQPE------------------------SD--------Y----------------------------------------- 714 (1176)
Q Consensus 708 ~~~~------------------------~~--------~----------------------------------------- 714 (1176)
.... .+ +
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 0
Q ss_pred -----------------------------------HHH-------------------------HHHHHHHHHhcCC-CCC
Q 001046 715 -----------------------------------LDA-------------------------SLITVLQIHLTEP-EGD 733 (1176)
Q Consensus 715 -----------------------------------~~~-------------------------~l~~v~~i~~~~~-~g~ 733 (1176)
+.. .+..+.......+ +++
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 000 0001111112223 789
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCC--------CCHHHHHhhcCCCCCCCceEEEEcchhhhccC
Q 001046 734 ILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSA--------LPSEMQSRIFDPAPPGKRKVVVATNIAEASLT 805 (1176)
Q Consensus 734 iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~--------l~~~~r~~i~~~f~~g~~kVlVATniae~GId 805 (1176)
+||||+++..++.+++.|.+. ..+ ...++.+..+||+ |++++|..+++.|+.|..+|||||+++++|||
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~-~~l--~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITEN-EKF--AEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSS-CSC--C-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred EEEEECcHHHHHHHHHHHHhC-ccc--cccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 999999999999999988752 001 1125778899999 99999999999999999999999999999999
Q ss_pred CCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCCCcEEEEecC
Q 001046 806 IDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYT 862 (1176)
Q Consensus 806 Ip~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g~G~c~~L~t 862 (1176)
+|+|++||++++ |.|.++|+||+|||||.| +.++.++.
T Consensus 480 ip~v~~VI~~d~------------------p~s~~~~~Qr~GRArr~g-~~~~l~~~ 517 (699)
T 4gl2_A 480 IKECNIVIRYGL------------------VTNEIAMVQARGRARADE-STYVLVAH 517 (699)
T ss_dssp CCSCCCCEEESC------------------CCCHHHHHHHHTTSCSSS-CEEEEEEE
T ss_pred cccCCEEEEeCC------------------CCCHHHHHHHcCCCCCCC-ceEEEEEe
Confidence 999999999998 999999999999998776 44444443
No 42
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.97 E-value=2.5e-31 Score=340.70 Aligned_cols=325 Identities=15% Similarity=0.126 Sum_probs=186.0
Q ss_pred cCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccC----CCEEEEeccHHHHHHHHHHHHHHHhCCccC
Q 001046 522 SLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTT----RGKIGCTQPRRVAAMSVAKRVAEEFGCRLG 597 (1176)
Q Consensus 522 ~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~----~~~Ilv~~PrR~lA~qva~rva~e~g~~~G 597 (1176)
...++++|.++++.+..++++|+++|||||||.++..+++...... +++++|++|+++|+.|+...+...+.. .|
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~-~~ 324 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-QG 324 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG-GT
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc-CC
Confidence 3457799999999999999999999999999999998888764432 568999999999999999988776521 13
Q ss_pred CeeEEEeecccc------cCCCceEEEeChHHHHHHHhhCC--CCCCCceEEEcCCCcCCCchhHHHHHHHHHHhh----
Q 001046 598 EEVGYAIRFEDC------TGPDTVIKYMTDGMLLREILIDD--NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKR---- 665 (1176)
Q Consensus 598 ~~vGy~ir~~~~------~~~~t~I~~~T~g~Llr~l~~~~--~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~---- 665 (1176)
..++........ ...+.+|+|+|+++|++.+.... .+.++++|||||||.... ...+..++..+...
T Consensus 325 ~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~-~~~~~~i~~~~~~~~~~~ 403 (797)
T 4a2q_A 325 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG-NHPYNVLMTRYLEQKFNS 403 (797)
T ss_dssp CCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCST-TSHHHHHHHHHHHHHHTT
T ss_pred ceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCC-CccHHHHHHHHHHHhhcc
Confidence 333322221111 11357899999999999887654 578899999999995333 32344444444433
Q ss_pred -CCCccEEEEcCCCCH----------HHHHhhh--cCCCeEecCCc---------eeeeEEE-EecC-CCch--------
Q 001046 666 -RPDLRLIVTSATLDA----------EKFSGYF--FNCNIFTIPGR---------TFPVEIL-YTKQ-PESD-------- 713 (1176)
Q Consensus 666 -r~~~kvIlmSATl~~----------~~~~~~f--~~~~v~~i~gr---------~~pv~~~-~~~~-~~~~-------- 713 (1176)
.+..++|+||||+.. +.+...+ .+...+..... ..|.... .... ....
T Consensus 404 ~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 483 (797)
T 4a2q_A 404 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 483 (797)
T ss_dssp CCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHH
T ss_pred CCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHH
Confidence 667899999999931 2222111 12222211110 0011000 0000 0000
Q ss_pred --------------------------------hH----------------------------------------------
Q 001046 714 --------------------------------YL---------------------------------------------- 715 (1176)
Q Consensus 714 --------------------------------~~---------------------------------------------- 715 (1176)
++
T Consensus 484 ~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 563 (797)
T 4a2q_A 484 MSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 563 (797)
T ss_dssp HHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 00
Q ss_pred ------------------------------------------------HHHHHHHHHH----HhcCCCCCEEEEeCCHHH
Q 001046 716 ------------------------------------------------DASLITVLQI----HLTEPEGDILLFLTGQEE 743 (1176)
Q Consensus 716 ------------------------------------------------~~~l~~v~~i----~~~~~~g~iLVFl~~~~e 743 (1176)
...+..+..+ ....+++++||||+++..
T Consensus 564 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~ 643 (797)
T 4a2q_A 564 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 643 (797)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHH
Confidence 0001111111 122556899999999999
Q ss_pred HHHHHHHHHHHHhccCC---CCCCeEEEEecCCCCHHHHHhhcCCCCC-CCceEEEEcchhhhccCCCCeeEEEeCCccc
Q 001046 744 IDFACQSLYERMKGLGK---NVPELIILPVYSALPSEMQSRIFDPAPP-GKRKVVVATNIAEASLTIDGIFYVIDPGFAK 819 (1176)
Q Consensus 744 i~~l~~~L~~~~~~l~~---~~~~~~v~~lhs~l~~~~r~~i~~~f~~-g~~kVlVATniae~GIdIp~V~~VId~g~~k 819 (1176)
++.++..|.+....-+. ...+.....+||+|++.+|..+++.|+. |..+|||||+++++|||+|+|++||+++.
T Consensus 644 ~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~-- 721 (797)
T 4a2q_A 644 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY-- 721 (797)
T ss_dssp HHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC--
T ss_pred HHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC--
Confidence 99999888652000000 0113345567999999999999999999 99999999999999999999999999998
Q ss_pred ceeccCCCCCccccccccCHHHHHHHhcccCCCCCcEEEEecChHHHh
Q 001046 820 QNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYR 867 (1176)
Q Consensus 820 ~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g~G~c~~L~t~~~~~ 867 (1176)
|.|..+|+||+|| ||..+|.||+|+++....
T Consensus 722 ----------------p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 722 ----------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 752 (797)
T ss_dssp ----------------CSCHHHHHTC--------CCCEEEEECCHHHH
T ss_pred ----------------CCCHHHHHHhcCC-CCCCCceEEEEEeCCcHH
Confidence 9999999999999 999999999999987653
No 43
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=6e-30 Score=331.84 Aligned_cols=325 Identities=15% Similarity=0.143 Sum_probs=186.4
Q ss_pred cCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccC----CCEEEEeccHHHHHHHHHHHHHHHhCCccC
Q 001046 522 SLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTT----RGKIGCTQPRRVAAMSVAKRVAEEFGCRLG 597 (1176)
Q Consensus 522 ~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~----~~~Ilv~~PrR~lA~qva~rva~e~g~~~G 597 (1176)
...++++|.++++.+..++++|+++|||||||.++..+++...... +++++|++|+++|+.|++..+...+.. .|
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~-~~ 324 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-QG 324 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT-TT
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc-cC
Confidence 5567899999999999999999999999999999999888764432 568999999999999999888776521 12
Q ss_pred CeeEEEeeccccc------CCCceEEEeChHHHHHHHhhCC--CCCCCceEEEcCCCcCCCchhHHHHHHHHHHhh----
Q 001046 598 EEVGYAIRFEDCT------GPDTVIKYMTDGMLLREILIDD--NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKR---- 665 (1176)
Q Consensus 598 ~~vGy~ir~~~~~------~~~t~I~~~T~g~Llr~l~~~~--~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~---- 665 (1176)
..++......... ....+|+|+|+++|++.+.... .+.++++|||||||.... ...+..++..+...
T Consensus 325 ~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~-~~~~~~i~~~~~~~~~~~ 403 (936)
T 4a2w_A 325 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG-NHPYNVLMTRYLEQKFNS 403 (936)
T ss_dssp CCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCST-TCHHHHHHHHHHHHHHTT
T ss_pred ceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCC-CccHHHHHHHHHHHhhcc
Confidence 2333221111111 1356899999999999887654 478899999999995333 32344445444443
Q ss_pred -CCCccEEEEcCCCCH----------HHHHhhh--cCCCeEecCCc---------eeeeEEE-EecC-CC----------
Q 001046 666 -RPDLRLIVTSATLDA----------EKFSGYF--FNCNIFTIPGR---------TFPVEIL-YTKQ-PE---------- 711 (1176)
Q Consensus 666 -r~~~kvIlmSATl~~----------~~~~~~f--~~~~v~~i~gr---------~~pv~~~-~~~~-~~---------- 711 (1176)
.+..++|+||||+.. +.+...+ .+...+..... ..|.... .... ..
T Consensus 404 ~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l 483 (936)
T 4a2w_A 404 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 483 (936)
T ss_dssp CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred CCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHH
Confidence 567899999999931 1121111 12222211110 0011100 0000 00
Q ss_pred --------------------------c-h---hH----------------------------------------------
Q 001046 712 --------------------------S-D---YL---------------------------------------------- 715 (1176)
Q Consensus 712 --------------------------~-~---~~---------------------------------------------- 715 (1176)
. . ++
T Consensus 484 ~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~ 563 (936)
T 4a2w_A 484 MSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 563 (936)
T ss_dssp HHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 0 0 00
Q ss_pred ------------------------------------------------HHHHHHHHHHHh----cCCCCCEEEEeCCHHH
Q 001046 716 ------------------------------------------------DASLITVLQIHL----TEPEGDILLFLTGQEE 743 (1176)
Q Consensus 716 ------------------------------------------------~~~l~~v~~i~~----~~~~g~iLVFl~~~~e 743 (1176)
...+..+..+.. ..+++++|||++++..
T Consensus 564 ~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ 643 (936)
T 4a2w_A 564 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 643 (936)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHH
Confidence 000111111111 2456899999999999
Q ss_pred HHHHHHHHHHHH--hccCC-CCCCeEEEEecCCCCHHHHHhhcCCCCC-CCceEEEEcchhhhccCCCCeeEEEeCCccc
Q 001046 744 IDFACQSLYERM--KGLGK-NVPELIILPVYSALPSEMQSRIFDPAPP-GKRKVVVATNIAEASLTIDGIFYVIDPGFAK 819 (1176)
Q Consensus 744 i~~l~~~L~~~~--~~l~~-~~~~~~v~~lhs~l~~~~r~~i~~~f~~-g~~kVlVATniae~GIdIp~V~~VId~g~~k 819 (1176)
++.++..|.+.. ..+.. ...+.....+||+|++.+|..+++.|+. |..+|||||+++++|||+|+|++||+++.
T Consensus 644 ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~-- 721 (936)
T 4a2w_A 644 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY-- 721 (936)
T ss_dssp HHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESC--
T ss_pred HHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCC--
Confidence 999999887631 00000 0113345567999999999999999999 99999999999999999999999999998
Q ss_pred ceeccCCCCCccccccccCHHHHHHHhcccCCCCCcEEEEecChHHHh
Q 001046 820 QNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYR 867 (1176)
Q Consensus 820 ~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g~G~c~~L~t~~~~~ 867 (1176)
|.|..+|+||+|| ||..+|.||.|++.....
T Consensus 722 ----------------p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 722 ----------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 752 (936)
T ss_dssp ----------------CSCSHHHHCC--------CCCEEEEESCHHHH
T ss_pred ----------------CCCHHHHHHhcCC-CCCCCCEEEEEEeCCCHH
Confidence 9999999999999 999999999999987654
No 44
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.6e-31 Score=336.65 Aligned_cols=303 Identities=17% Similarity=0.236 Sum_probs=210.5
Q ss_pred CCchHHHHHHHHHHHcC------CeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCcc
Q 001046 523 LPIYKLKKELIQAVHDN------QVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRL 596 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~------~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~ 596 (1176)
+.++++|.++++.+..+ .+++++||||||||.++..+++... ..+.++++++|+++||.|+++++.+.+. ..
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l-~~g~qvlvlaPtr~La~Q~~~~l~~~~~-~~ 444 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNY-EAGFQTAFMVPTSILAIQHYRRTVESFS-KF 444 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHH-HHTSCEEEECSCHHHHHHHHHHHHHHHT-CS
T ss_pred CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHHhh-hc
Confidence 34688999999998765 5899999999999999999888753 3457899999999999999999887763 33
Q ss_pred CCeeEEEeeccc----------ccCCCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhC
Q 001046 597 GEEVGYAIRFED----------CTGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRR 666 (1176)
Q Consensus 597 G~~vGy~ir~~~----------~~~~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r 666 (1176)
|..++....... ......+|+|+|++.+.. ...+.++++|||||+|..+.... ..+....
T Consensus 445 gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr~g~~qr------~~l~~~~ 514 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----DVHFKNLGLVIIDEQHRFGVKQR------EALMNKG 514 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----CCCCSCCCEEEEESCCCC-----------CCCCSSS
T ss_pred CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh----hhhccCCceEEecccchhhHHHH------HHHHHhC
Confidence 444554332221 112358999999987743 45789999999999996432221 1112233
Q ss_pred CCccEEEEcCCCCHHHHHhh-hcCCCeEec---CCceeeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 001046 667 PDLRLIVTSATLDAEKFSGY-FFNCNIFTI---PGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQE 742 (1176)
Q Consensus 667 ~~~kvIlmSATl~~~~~~~~-f~~~~v~~i---~gr~~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ 742 (1176)
.+.++|+||||+.+..+... ++...+..+ +....|+...+..... ....+..+.. ....+++++|||+..+
T Consensus 515 ~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~---~~~l~~~i~~--~l~~g~qvlVf~~~ie 589 (780)
T 1gm5_A 515 KMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDR---VNEVYEFVRQ--EVMRGGQAFIVYPLIE 589 (780)
T ss_dssp SCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSST---HHHHHHHHHH--HTTTSCCBCCBCCCC-
T ss_pred CCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccch---HHHHHHHHHH--HHhcCCcEEEEecchh
Confidence 57899999999976666543 333333222 2233456554443322 2222222222 1245678999999876
Q ss_pred HHHHH----HHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcc
Q 001046 743 EIDFA----CQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFA 818 (1176)
Q Consensus 743 ei~~l----~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~ 818 (1176)
+.+.+ +..+.+.+... ..+++.+..+||+|++++|..+++.|++|..+|||||+++++|||+|++++||+++.
T Consensus 590 ~se~l~~~~a~~l~~~L~~~--~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~- 666 (780)
T 1gm5_A 590 ESDKLNVKSAVEMYEYLSKE--VFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENP- 666 (780)
T ss_dssp -------CHHHHHHHSGGGS--CC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSC-
T ss_pred hhhhhhHHHHHHHHHHHHhh--hcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCC-
Confidence 54321 23333333220 234677889999999999999999999999999999999999999999999997776
Q ss_pred cceeccCCCCCccccccc-cCHHHHHHHhcccCCCC-CcEEEEecC
Q 001046 819 KQNVYNPKQGLDSLVITP-ISQASAKQRAGRAGRTG-PGKCYRLYT 862 (1176)
Q Consensus 819 k~~~yd~~~g~~~l~~~p-~S~as~~QR~GRAGR~g-~G~c~~L~t 862 (1176)
| .+.+++.||+|||||.| +|.||.+++
T Consensus 667 -----------------~r~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 667 -----------------ERFGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp -----------------SSSCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred -----------------CCCCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 4 36788999999999998 899999997
No 45
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=1.4e-29 Score=333.04 Aligned_cols=299 Identities=18% Similarity=0.183 Sum_probs=221.1
Q ss_pred chHHHHHHHHHHHc----CC--eEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCC
Q 001046 525 IYKLKKELIQAVHD----NQ--VLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGE 598 (1176)
Q Consensus 525 i~~~q~~ii~ai~~----~~--~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~ 598 (1176)
.+++|.++++.+.. ++ +++++|+||||||.++..+++... ..+.+++|++||++||.|+++++.+.++ ..+.
T Consensus 604 ~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~-~~g~~vlvlvPt~~La~Q~~~~~~~~~~-~~~i 681 (1151)
T 2eyq_A 604 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-DNHKQVAVLVPTTLLAQQHYDNFRDRFA-NWPV 681 (1151)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHST-TTTC
T ss_pred CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH-HhCCeEEEEechHHHHHHHHHHHHHHhh-cCCC
Confidence 47899999998876 55 999999999999998887776643 3466999999999999999999887664 3344
Q ss_pred eeEEEeecccc----------cCCCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCC
Q 001046 599 EVGYAIRFEDC----------TGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPD 668 (1176)
Q Consensus 599 ~vGy~ir~~~~----------~~~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~ 668 (1176)
.+++..++... .....+|+++|++.|. .+..+.++++|||||||.-+.. ....++ ..+++
T Consensus 682 ~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~~~~~~~l~lvIiDEaH~~g~~---~~~~l~---~l~~~ 751 (1151)
T 2eyq_A 682 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----SDVKFKDLGLLIVDEEHRFGVR---HKERIK---AMRAN 751 (1151)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----SCCCCSSEEEEEEESGGGSCHH---HHHHHH---HHHTT
T ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----CCccccccceEEEechHhcChH---HHHHHH---HhcCC
Confidence 55554433221 1235789999997652 3456899999999999963221 222233 23467
Q ss_pred ccEEEEcCCCCHHHHHhhhcCCCe---Eec-CCceeeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHH
Q 001046 669 LRLIVTSATLDAEKFSGYFFNCNI---FTI-PGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEI 744 (1176)
Q Consensus 669 ~kvIlmSATl~~~~~~~~f~~~~v---~~i-~gr~~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei 744 (1176)
.++++||||+....+...+.+..- +.. +....++..++........ ...++.. ...+++++|||++.+++
T Consensus 752 ~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i----~~~il~~--l~~g~qvlvf~~~v~~~ 825 (1151)
T 2eyq_A 752 VDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVV----REAILRE--ILRGGQVYYLYNDVENI 825 (1151)
T ss_dssp SEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHH----HHHHHHH--HTTTCEEEEECCCSSCH
T ss_pred CCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHH----HHHHHHH--HhcCCeEEEEECCHHHH
Confidence 899999999976655554443322 111 2233456555544322111 1122221 23578999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceecc
Q 001046 745 DFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYN 824 (1176)
Q Consensus 745 ~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd 824 (1176)
+.+++.|.+.+ +++.+..+||+|+..+|..+++.|..|..+|||||+++++|||||++++||..+.
T Consensus 826 ~~l~~~L~~~~-------p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~------- 891 (1151)
T 2eyq_A 826 QKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA------- 891 (1151)
T ss_dssp HHHHHHHHHHC-------TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTT-------
T ss_pred HHHHHHHHHhC-------CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCC-------
Confidence 99999998753 5677899999999999999999999999999999999999999999999995443
Q ss_pred CCCCCccccccccCHHHHHHHhcccCCCC-CcEEEEecChHH
Q 001046 825 PKQGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESA 865 (1176)
Q Consensus 825 ~~~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~ 865 (1176)
.+.+.++|.||+||+||.| +|.||.++++..
T Consensus 892 ----------~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 892 ----------DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp ----------TSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred ----------CCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 1346788999999999999 899999987643
No 46
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=8.3e-30 Score=333.17 Aligned_cols=342 Identities=14% Similarity=0.100 Sum_probs=227.9
Q ss_pred cCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeE
Q 001046 522 SLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVG 601 (1176)
Q Consensus 522 ~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vG 601 (1176)
....+++|.++++.+..+++++++||||||||+++..+++.. ...+++++|++|||+||.|+++++.. ++ ..|..++
T Consensus 76 gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~-~~~~~~~Lil~PtreLa~Q~~~~l~~-l~-~~~i~v~ 152 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWL-ARKGKKSALVFPTVTLVKQTLERLQK-LA-DEKVKIF 152 (1104)
T ss_dssp SSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHH-HTTTCCEEEEESSHHHHHHHHHHHHT-TS-CTTSCEE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHH-HhcCCeEEEEechHHHHHHHHHHHHH-hh-CCCCeEE
Confidence 345779999999999999999999999999999766666654 35567899999999999999999876 55 5566666
Q ss_pred EEeecccc----------cCCCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCch---hHHHH-------HHHH
Q 001046 602 YAIRFEDC----------TGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHT---DVLFG-------LLKQ 661 (1176)
Q Consensus 602 y~ir~~~~----------~~~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~---d~ll~-------llk~ 661 (1176)
........ .....+|+|+|||+|++.+.. ..+.++++|||||||+-.-.. |-++. .+..
T Consensus 153 ~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~ 231 (1104)
T 4ddu_A 153 GFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRK 231 (1104)
T ss_dssp EECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHH
Confidence 55443322 112489999999999877653 457889999999999411110 22222 1222
Q ss_pred HHh-hC-----------CCccEEEEcCCCCHH----HHHhhhcCCCeEecCCceeeeEEEEecCCCchhHHHHHHHHHHH
Q 001046 662 LVK-RR-----------PDLRLIVTSATLDAE----KFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQI 725 (1176)
Q Consensus 662 ~~~-~r-----------~~~kvIlmSATl~~~----~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~l~~v~~i 725 (1176)
++. .. ++.++|+||||+.+. .+...+....+.........+...|........ +..++..
T Consensus 232 il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~~~~~~~i~~~~~~~~k~~~----L~~ll~~ 307 (1104)
T 4ddu_A 232 AFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEK----LVELLEI 307 (1104)
T ss_dssp HHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBCCCCCCCEEEEEESCCCHHH----HHHHHHH
T ss_pred HHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccCCCCcCCceeEEEecCHHHH----HHHHHHh
Confidence 222 11 678999999995322 233333332222222222334445544422222 2222221
Q ss_pred HhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEE-EecCCCCHHHHHhhcCCCCCCCceEEEE----cchh
Q 001046 726 HLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIIL-PVYSALPSEMQSRIFDPAPPGKRKVVVA----TNIA 800 (1176)
Q Consensus 726 ~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~-~lhs~l~~~~r~~i~~~f~~g~~kVlVA----Tnia 800 (1176)
.++++||||++++.++.++..|... ++.+. .+||. |.+ ++.|+.|..+|||| |+++
T Consensus 308 ----~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~Tdvl 368 (1104)
T 4ddu_A 308 ----FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKL 368 (1104)
T ss_dssp ----HCSSEEEEESSSHHHHHHHHHHHHT---------TCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHH
T ss_pred ----cCCCEEEEECcHHHHHHHHHHHHhC---------CCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCee
Confidence 2489999999999999999998762 56677 89982 555 99999999999999 9999
Q ss_pred hhccCCCC-eeEEEeCCccccee-----ccCCCCCccc------------------------------------------
Q 001046 801 EASLTIDG-IFYVIDPGFAKQNV-----YNPKQGLDSL------------------------------------------ 832 (1176)
Q Consensus 801 e~GIdIp~-V~~VId~g~~k~~~-----yd~~~g~~~l------------------------------------------ 832 (1176)
++|||||+ |++||++|+.+.++ ++|..++..|
T Consensus 369 arGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l 448 (1104)
T 4ddu_A 369 TRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGV 448 (1104)
T ss_dssp CCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSS
T ss_pred EecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceE
Confidence 99999999 99999999977221 2222211111
Q ss_pred -------cccccCHHHHHHHhcccCCCC-----CcEEEEecChHHHhhh----C---CCCCchhhhhcChHHHHHHH
Q 001046 833 -------VITPISQASAKQRAGRAGRTG-----PGKCYRLYTESAYRNE----M---SPTSIPEIQRINLGFTTLTM 890 (1176)
Q Consensus 833 -------~~~p~S~as~~QR~GRAGR~g-----~G~c~~L~t~~~~~~~----l---~~~~~pEI~r~~L~~~~L~l 890 (1176)
.....+..+|+||+|||||.+ .|.++.++......+. + .+.....+...+|+.++-.+
T Consensus 449 ~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 525 (1104)
T 4ddu_A 449 VVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEV 525 (1104)
T ss_dssp EEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHHHHTCCCEEEGGGCCHHHHHHHH
T ss_pred EecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHhhhcccccccccccCHHHHHHHH
Confidence 011227789999999999965 5788988865432211 1 23333344455666655444
No 47
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.96 E-value=2e-30 Score=339.07 Aligned_cols=266 Identities=15% Similarity=0.087 Sum_probs=177.6
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCC----
Q 001046 523 LPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGE---- 598 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~---- 598 (1176)
++. ++|.++++++.++++++++||||||||+ +.++++......+++++|++|+|+||.|+++.+..... ..|.
T Consensus 56 ~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~-~~~i~~~~ 132 (1054)
T 1gku_B 56 EPR-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAE-KAGVGTEN 132 (1054)
T ss_dssp SCC-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHT-TTCCSGGG
T ss_pred CCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHh-hcCCCccc
Confidence 344 9999999999999999999999999998 76777666555677899999999999999998766542 2333
Q ss_pred eeEEEeeccc---------ccCCCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-----
Q 001046 599 EVGYAIRFED---------CTGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK----- 664 (1176)
Q Consensus 599 ~vGy~ir~~~---------~~~~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~----- 664 (1176)
.++....... .... ++|+|+|||+|++.+.. |.++++|||||||+-.-....+..+++.+--
T Consensus 133 ~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~ 208 (1054)
T 1gku_B 133 LIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE---LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLK 208 (1054)
T ss_dssp SEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT---SCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETT
T ss_pred eEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH---hccCCEEEEeChhhhhhccccHHHHHHHhCcchhhh
Confidence 3443222111 1122 89999999999987654 7899999999999511112222223322210
Q ss_pred ---hCCCccEEEEcCCCCHH-HHH-hhhcCCCeEecCCce---eeeEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEE
Q 001046 665 ---RRPDLRLIVTSATLDAE-KFS-GYFFNCNIFTIPGRT---FPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILL 736 (1176)
Q Consensus 665 ---~r~~~kvIlmSATl~~~-~~~-~~f~~~~v~~i~gr~---~pv~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLV 736 (1176)
..+..+++++|||++.. .+. .++.+...+.+.... ..+...|........+. .+.. ..++++||
T Consensus 209 ~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k~~~L~-------~ll~-~~~~~~LV 280 (1054)
T 1gku_B 209 TKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESISTLS-------SILE-KLGTGGII 280 (1054)
T ss_dssp TTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCCCTTTTH-------HHHT-TSCSCEEE
T ss_pred hhhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEechhHHHHHH-------HHHh-hcCCCEEE
Confidence 12457889999999543 111 111111112222222 23444554332222222 1111 22678999
Q ss_pred EeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEE----cchhhhccCCCCe-eE
Q 001046 737 FLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVA----TNIAEASLTIDGI-FY 811 (1176)
Q Consensus 737 Fl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVA----Tniae~GIdIp~V-~~ 811 (1176)
||+++.+++.++..|.+ . +.+..+||++. .+++.|+.|..+|||| ||++++|||+|+| ++
T Consensus 281 F~~t~~~a~~l~~~L~~---------~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~ 345 (1054)
T 1gku_B 281 YARTGEEAEEIYESLKN---------K-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRF 345 (1054)
T ss_dssp EESSHHHHHHHHHTTTT---------S-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCE
T ss_pred EEcCHHHHHHHHHHHhh---------c-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccE
Confidence 99999999998887753 1 67899999984 5677788999999999 9999999999995 99
Q ss_pred EEeCCcc
Q 001046 812 VIDPGFA 818 (1176)
Q Consensus 812 VId~g~~ 818 (1176)
||++|+.
T Consensus 346 VI~~~~P 352 (1054)
T 1gku_B 346 AVFVGCP 352 (1054)
T ss_dssp EEEESCC
T ss_pred EEEeCCC
Confidence 9999997
No 48
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.96 E-value=3.7e-29 Score=304.77 Aligned_cols=303 Identities=13% Similarity=0.094 Sum_probs=206.0
Q ss_pred cCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeE
Q 001046 522 SLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVG 601 (1176)
Q Consensus 522 ~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vG 601 (1176)
...++++|.++++.+..+++++++||||||||.++..++........+++++++|+++|+.|+.+++.. ++...+..++
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~-~~~~~~~~v~ 189 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVD-YRLFSHAMIK 189 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHH-TTSSCGGGEE
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHH-hhcCCccceE
Confidence 346789999999999999999999999999999998877765434455999999999999999998844 4333333343
Q ss_pred EEeecccc---cCCCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-hCCCccEEEEcCC
Q 001046 602 YAIRFEDC---TGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK-RRPDLRLIVTSAT 677 (1176)
Q Consensus 602 y~ir~~~~---~~~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~-~r~~~kvIlmSAT 677 (1176)
...+.... ......|+++|++.|.+.. ...+.++++|||||||. .... .+..++. ..+..++|+||||
T Consensus 190 ~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~--~~~~~~~~liIiDE~H~-~~~~-----~~~~il~~~~~~~~~l~lSAT 261 (510)
T 2oca_A 190 KIGGGASKDDKYKNDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECHL-ATGK-----SISSIISGLNNCMFKFGLSGS 261 (510)
T ss_dssp ECGGGCCTTGGGCTTCSEEEEEHHHHTTSC--GGGGGGEEEEEEETGGG-CCHH-----HHHHHGGGCTTCCEEEEEESC
T ss_pred EEecCCccccccccCCcEEEEeHHHHhhch--hhhhhcCCEEEEECCcC-CCcc-----cHHHHHHhcccCcEEEEEEeC
Confidence 32222211 1256899999999765431 13578899999999995 3321 2333433 3467799999999
Q ss_pred CCHH-----HHHhhhcCCCeEecCCc-------eeeeEEE--EecCCC--------chhHH------------HHHHHHH
Q 001046 678 LDAE-----KFSGYFFNCNIFTIPGR-------TFPVEIL--YTKQPE--------SDYLD------------ASLITVL 723 (1176)
Q Consensus 678 l~~~-----~~~~~f~~~~v~~i~gr-------~~pv~~~--~~~~~~--------~~~~~------------~~l~~v~ 723 (1176)
++.. .+..++ +..++.++.. ..|..+. ....+. ..|.. ..+..++
T Consensus 262 p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 340 (510)
T 2oca_A 262 LRDGKANIMQYVGMF-GEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLA 340 (510)
T ss_dssp GGGCSSCHHHHHHHH-CSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCcccHHHhHHhh-CCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHH
Confidence 9422 223333 2333332221 1111111 111111 11111 0111112
Q ss_pred HHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEc-chhhh
Q 001046 724 QIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVAT-NIAEA 802 (1176)
Q Consensus 724 ~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVAT-niae~ 802 (1176)
..........+|||++ .++++.+++.|.+. + ..+..+||+++..+|..+++.|.+|..+||||| +++++
T Consensus 341 ~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~----~-----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~ 410 (510)
T 2oca_A 341 IKLAQKDENAFVMFKH-VSHGKAIFDLIKNE----Y-----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST 410 (510)
T ss_dssp HHHHTTTCEEEEEESS-HHHHHHHHHHHHTT----C-----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH
T ss_pred HHHHhcCCCeEEEEec-HHHHHHHHHHHHHc----C-----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc
Confidence 2122223445666666 77777777666542 1 268899999999999999999999999999999 99999
Q ss_pred ccCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCCCcE-EEEecC
Q 001046 803 SLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGK-CYRLYT 862 (1176)
Q Consensus 803 GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g~G~-c~~L~t 862 (1176)
|||+|++++||.++. |.|.++|.||+|||||.|+|. ++.+|+
T Consensus 411 GiDip~v~~vi~~~~------------------~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 411 GISVKNLHHVVLAHG------------------VKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SCCCCSEEEEEESSC------------------CCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccccccCcEEEEeCC------------------CCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999998887 788899999999999999654 666665
No 49
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.96 E-value=1.7e-29 Score=304.73 Aligned_cols=293 Identities=15% Similarity=0.132 Sum_probs=209.4
Q ss_pred cCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeE
Q 001046 522 SLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVG 601 (1176)
Q Consensus 522 ~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vG 601 (1176)
.+.++++|.++++++..++++++++|||+|||.++..++... +.+++|++|+++|+.|+++++.+ ++.. .++
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~---~v~ 162 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI-FGEE---YVG 162 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGG-GCGG---GEE
T ss_pred CCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHh-CCCc---ceE
Confidence 467899999999999999999999999999999998888765 56899999999999999998877 6543 033
Q ss_pred EEeecccccCCCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCCCH-
Q 001046 602 YAIRFEDCTGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDA- 680 (1176)
Q Consensus 602 y~ir~~~~~~~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl~~- 680 (1176)
.... .......|+++|++.+...+.. ...++++|||||||. .....+ +.+....+..++|+||||+..
T Consensus 163 ~~~g---~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~liIvDEaH~-~~~~~~-----~~~~~~~~~~~~l~lSATp~~~ 231 (472)
T 2fwr_A 163 EFSG---RIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHH-LPAESY-----VQIAQMSIAPFRLGLTATFERE 231 (472)
T ss_dssp EBSS---SCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEETGGG-TTSTTT-----HHHHHTCCCSEEEEEESCCCCT
T ss_pred EECC---CcCCcCCEEEEEcHHHHHHHHH--hcCCCCEEEEECCcC-CCChHH-----HHHHHhcCCCeEEEEecCccCC
Confidence 2211 2234578999999998776532 235699999999995 333222 234445567899999999951
Q ss_pred ----HHHHhhhcCCCeEe-----cCCc-eeeeE--EEEecCCC---------------------------c---hh----
Q 001046 681 ----EKFSGYFFNCNIFT-----IPGR-TFPVE--ILYTKQPE---------------------------S---DY---- 714 (1176)
Q Consensus 681 ----~~~~~~f~~~~v~~-----i~gr-~~pv~--~~~~~~~~---------------------------~---~~---- 714 (1176)
..+..+++ ..++. +... ..+.. ........ . .+
T Consensus 232 ~~~~~~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 310 (472)
T 2fwr_A 232 DGRHEILKEVVG-GKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMAS 310 (472)
T ss_dssp TSGGGSHHHHTC-CEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTT
T ss_pred CCHHHHHHHHhC-CeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHh
Confidence 12333332 11111 1010 00100 01100000 0 00
Q ss_pred ----------------------HHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 001046 715 ----------------------LDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYS 772 (1176)
Q Consensus 715 ----------------------~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs 772 (1176)
....+..+..+.....++++||||++.+.++.++..|. +..+||
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------------~~~~~g 376 (472)
T 2fwr_A 311 GYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------------IPAITH 376 (472)
T ss_dssp CCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------------CCBCCS
T ss_pred ccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------------cceeeC
Confidence 00112333333344567899999999999888877652 346899
Q ss_pred CCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCC
Q 001046 773 ALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRT 852 (1176)
Q Consensus 773 ~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~ 852 (1176)
+++..+|..+++.|+.|..+|||||+++++|+|+|++++||+++. |.|...|.||+|||||.
T Consensus 377 ~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~------------------~~s~~~~~Q~~GR~~R~ 438 (472)
T 2fwr_A 377 RTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSG------------------SGSAREYIQRLGRILRP 438 (472)
T ss_dssp SSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECC------------------SSCCHHHHHHHHHSBCC
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECC------------------CCCHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999998887 88999999999999999
Q ss_pred CCc----EEEEecChHHH
Q 001046 853 GPG----KCYRLYTESAY 866 (1176)
Q Consensus 853 g~G----~c~~L~t~~~~ 866 (1176)
|+| .+|.|+++...
T Consensus 439 g~~k~~~~i~~lv~~~t~ 456 (472)
T 2fwr_A 439 SKGKKEAVLYELISRGTG 456 (472)
T ss_dssp CTTTCCEEEEEEEECSCC
T ss_pred CCCCceEEEEEEEeCCCc
Confidence 977 57777776544
No 50
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.95 E-value=5.6e-28 Score=298.84 Aligned_cols=305 Identities=19% Similarity=0.163 Sum_probs=206.4
Q ss_pred cCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeE
Q 001046 522 SLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVG 601 (1176)
Q Consensus 522 ~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vG 601 (1176)
.+-.++.|...+..+.+|+ |+.++||+|||.++.++++...+. +..++|+.|+|+||.|++..+... +..+|..||
T Consensus 81 G~~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~-g~~vlVltptreLA~qd~e~~~~l-~~~lgl~v~ 156 (844)
T 1tf5_A 81 GMFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT-GKGVHVVTVNEYLASRDAEQMGKI-FEFLGLTVG 156 (844)
T ss_dssp SCCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT-SSCEEEEESSHHHHHHHHHHHHHH-HHHTTCCEE
T ss_pred CCCCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHHH-HhhcCCeEE
Confidence 3456788999999999999 899999999999999998854343 457999999999999998765443 233455555
Q ss_pred EEeecccc----cCCCceEEEeChHHH-HHHHhhC-------CCCCCCceEEEcCCCcCCC-chh--------------H
Q 001046 602 YAIRFEDC----TGPDTVIKYMTDGML-LREILID-------DNLSQYSVIMLDEAHERTI-HTD--------------V 654 (1176)
Q Consensus 602 y~ir~~~~----~~~~t~I~~~T~g~L-lr~l~~~-------~~L~~~s~IIiDEaHeR~~-~~d--------------~ 654 (1176)
..+...+. ...+++|+|+|||.| ++.|... ..++.+.++||||||. .+ +.. -
T Consensus 157 ~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~-mLiDea~tplIisg~~~~~~~ 235 (844)
T 1tf5_A 157 LNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDS-ILIDEARTPLIISGQAAKSTK 235 (844)
T ss_dssp ECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHH-HHTTTTTCEEEEEEEEECCCH
T ss_pred EEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhh-hhhhccccchhhcCCcccchh
Confidence 43332111 112478999999999 4444332 3578999999999994 21 110 1
Q ss_pred HHHHHHHHHhhCC----------CccEE-----------------EEcCCCCH--HHH-----Hhhhc------------
Q 001046 655 LFGLLKQLVKRRP----------DLRLI-----------------VTSATLDA--EKF-----SGYFF------------ 688 (1176)
Q Consensus 655 ll~llk~~~~~r~----------~~kvI-----------------lmSATl~~--~~~-----~~~f~------------ 688 (1176)
+...+..++..-+ +.+++ ++|||+.. ..+ +.++.
T Consensus 236 ~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~ 315 (844)
T 1tf5_A 236 LYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQ 315 (844)
T ss_dssp HHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTE
T ss_pred HHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCe
Confidence 2333444444322 34555 67787531 111 11111
Q ss_pred -------------------------------------------------------------------------CCCeEec
Q 001046 689 -------------------------------------------------------------------------NCNIFTI 695 (1176)
Q Consensus 689 -------------------------------------------------------------------------~~~v~~i 695 (1176)
+..++.+
T Consensus 316 v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~I 395 (844)
T 1tf5_A 316 VVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTI 395 (844)
T ss_dssp EEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEEC
T ss_pred eEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEe
Confidence 0111111
Q ss_pred CCceeee------EEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEE
Q 001046 696 PGRTFPV------EILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILP 769 (1176)
Q Consensus 696 ~gr~~pv------~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~ 769 (1176)
|.. .|+ ...|. ...+...+.+..+...+ ..+.++||||+|++.++.++..|.. .++.+..
T Consensus 396 Ptn-~p~~r~d~~d~v~~--~~~~K~~al~~~i~~~~--~~~~pvLVft~s~~~se~Ls~~L~~---------~gi~~~v 461 (844)
T 1tf5_A 396 PTN-RPVVRDDRPDLIYR--TMEGKFKAVAEDVAQRY--MTGQPVLVGTVAVETSELISKLLKN---------KGIPHQV 461 (844)
T ss_dssp CCS-SCCCCEECCCEEES--SHHHHHHHHHHHHHHHH--HHTCCEEEEESCHHHHHHHHHHHHT---------TTCCCEE
T ss_pred cCC-CCcccccCCcEEEe--CHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHH---------CCCCEEE
Confidence 110 000 01111 11111222222222222 2356899999999999999998875 2567788
Q ss_pred ecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCC--------CeeEEEeCCcccceeccCCCCCccccccccCHHH
Q 001046 770 VYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTID--------GIFYVIDPGFAKQNVYNPKQGLDSLVITPISQAS 841 (1176)
Q Consensus 770 lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp--------~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as 841 (1176)
+||.+.+.++..+.+.++.| .|+||||+|+||+||+ ++.+||++++ |.|...
T Consensus 462 Lhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~------------------p~s~r~ 521 (844)
T 1tf5_A 462 LNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTER------------------HESRRI 521 (844)
T ss_dssp ECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSC------------------CSSHHH
T ss_pred eeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecC------------------CCCHHH
Confidence 99999988888887777666 6999999999999999 8999999999 999999
Q ss_pred HHHHhcccCCCC-CcEEEEecChHH
Q 001046 842 AKQRAGRAGRTG-PGKCYRLYTESA 865 (1176)
Q Consensus 842 ~~QR~GRAGR~g-~G~c~~L~t~~~ 865 (1176)
|+||+|||||.| ||.++.+++.++
T Consensus 522 y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 522 DNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHhhcCccccCCCCCeEEEEecHHH
Confidence 999999999999 999999998765
No 51
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.95 E-value=2.8e-27 Score=258.96 Aligned_cols=180 Identities=40% Similarity=0.688 Sum_probs=164.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCC----CEEEEeccHHHHHHHHHHHHH
Q 001046 514 LSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTR----GKIGCTQPRRVAAMSVAKRVA 589 (1176)
Q Consensus 514 ~~l~~~r~~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~----~~Ilv~~PrR~lA~qva~rva 589 (1176)
..+.+++..+|++++|.++++++..+++++++|||||||||++.+++++.....+ .+++|++|+|++|.|++++++
T Consensus 51 ~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~ 130 (235)
T 3llm_A 51 QAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVA 130 (235)
T ss_dssp HHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHH
Confidence 4566788999999999999999999999999999999999999999887544332 389999999999999999999
Q ss_pred HHhCCccCCeeEEEeecccccC-CCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCC
Q 001046 590 EEFGCRLGEEVGYAIRFEDCTG-PDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPD 668 (1176)
Q Consensus 590 ~e~g~~~G~~vGy~ir~~~~~~-~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~ 668 (1176)
..++..+|..+||.++++.... ..++|+|+|+|+|++.+.. .+.++++|||||||+|+++.++++..++.+...+++
T Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~ 208 (235)
T 3llm_A 131 FERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPE 208 (235)
T ss_dssp HTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCC
Confidence 9999999999999999988765 6789999999999999876 589999999999999999999999999999998899
Q ss_pred ccEEEEcCCCCHHHHHhhhcCCCeEec
Q 001046 669 LRLIVTSATLDAEKFSGYFFNCNIFTI 695 (1176)
Q Consensus 669 ~kvIlmSATl~~~~~~~~f~~~~v~~i 695 (1176)
+++|+||||++.+.|++||.++|++.+
T Consensus 209 ~~~il~SAT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 209 VRIVLMSATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp SEEEEEECSSCCHHHHHHTTSCCCEEC
T ss_pred CeEEEEecCCCHHHHHHHcCCCCEEeC
Confidence 999999999998899999999998764
No 52
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.94 E-value=5.9e-27 Score=288.81 Aligned_cols=302 Identities=15% Similarity=0.139 Sum_probs=193.4
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEE
Q 001046 523 LPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGY 602 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy 602 (1176)
+-.++.|...+..+.+|+ |..++||||||.++.++++...+. +..++|+.|||+||.|++..+... +..+|..|+.
T Consensus 73 ~~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~-g~~vlVltPTreLA~Q~~e~~~~l-~~~lgl~v~~ 148 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT-GKGVHVVTVNDYLAQRDAENNRPL-FEFLGLTVGI 148 (853)
T ss_dssp CCCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT-SSCCEEEESSHHHHHHHHHHHHHH-HHHTTCCEEE
T ss_pred CCCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc-CCcEEEEcCCHHHHHHHHHHHHHH-HHhcCCeEEE
Confidence 456788999999999998 899999999999999998864333 457999999999999998765443 2334555554
Q ss_pred Eeecccc----cCCCceEEEeChHHH-HHHHhhC-------CCCCCCceEEEcCCCcCCC-c---------------hhH
Q 001046 603 AIRFEDC----TGPDTVIKYMTDGML-LREILID-------DNLSQYSVIMLDEAHERTI-H---------------TDV 654 (1176)
Q Consensus 603 ~ir~~~~----~~~~t~I~~~T~g~L-lr~l~~~-------~~L~~~s~IIiDEaHeR~~-~---------------~d~ 654 (1176)
.+...+. ...+++|+|+|||.| ++.|... ..++++.++||||||. .+ + +++
T Consensus 149 i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~-mLiD~a~tpLIiSg~~~~~~~~ 227 (853)
T 2fsf_A 149 NLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDS-ILIDEARTPLIISGPAEDSSEM 227 (853)
T ss_dssp CCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHH-HTTTTTTCEEEEEEC-------
T ss_pred EeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHH-HHHhcCcccccccCCCccchhH
Confidence 3322111 112478999999999 5665533 3568999999999993 22 1 111
Q ss_pred ---HHHHHHHHHhh-----------------CCCccEE------------------------EEcCCCCH--HHH-----
Q 001046 655 ---LFGLLKQLVKR-----------------RPDLRLI------------------------VTSATLDA--EKF----- 683 (1176)
Q Consensus 655 ---ll~llk~~~~~-----------------r~~~kvI------------------------lmSATl~~--~~~----- 683 (1176)
+-.+++.+... .+..+++ ++|||... ..+
T Consensus 228 y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~ 307 (853)
T 2fsf_A 228 YKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALR 307 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHH
Confidence 11122221110 0012222 67777531 111
Q ss_pred Hhhhc---------------------------------------------------------------------------
Q 001046 684 SGYFF--------------------------------------------------------------------------- 688 (1176)
Q Consensus 684 ~~~f~--------------------------------------------------------------------------- 688 (1176)
+.++.
T Consensus 308 A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~ 387 (853)
T 2fsf_A 308 AHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTAD 387 (853)
T ss_dssp -------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTC
T ss_pred HHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCch
Confidence 00000
Q ss_pred ----------CCCeEecCCceeeeE------EEEecCCCchhHHHHHHHHHHHH--hcCCCCCEEEEeCCHHHHHHHHHH
Q 001046 689 ----------NCNIFTIPGRTFPVE------ILYTKQPESDYLDASLITVLQIH--LTEPEGDILLFLTGQEEIDFACQS 750 (1176)
Q Consensus 689 ----------~~~v~~i~gr~~pv~------~~~~~~~~~~~~~~~l~~v~~i~--~~~~~g~iLVFl~~~~ei~~l~~~ 750 (1176)
+..++.||. ..|+. ..|. . .......+.... ....+.++||||+|++.++.++..
T Consensus 388 te~~ef~~iY~l~vv~IPt-n~p~~R~d~~d~v~~--~----~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~ 460 (853)
T 2fsf_A 388 TEAFEFSSIYKLDTVVVPT-NRPMIRKDLPDLVYM--T----EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNE 460 (853)
T ss_dssp CCHHHHHHHHCCEEEECCC-SSCCCCEECCCEEES--S----HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHH
T ss_pred hHHHHHHHHhCCcEEEcCC-CCCceeecCCcEEEe--C----HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHH
Confidence 011111111 00100 0111 1 122222333222 123467899999999999999999
Q ss_pred HHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCC----------------------
Q 001046 751 LYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDG---------------------- 808 (1176)
Q Consensus 751 L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~---------------------- 808 (1176)
|.+. ++.+..+||.+...++..+.+.++.| .|+||||+|+||+||+.
T Consensus 461 L~~~---------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~ 529 (853)
T 2fsf_A 461 LTKA---------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKI 529 (853)
T ss_dssp HHHT---------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHH
T ss_pred HHHC---------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHH
Confidence 9763 56678899999888888898999888 69999999999999997
Q ss_pred ----------e-----eEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC-CcEEEEecChHH
Q 001046 809 ----------I-----FYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESA 865 (1176)
Q Consensus 809 ----------V-----~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~ 865 (1176)
| .+||++.+ |.|...|.||+|||||.| ||.++.+++.++
T Consensus 530 ~~~~~~~~~~V~~~GGl~VI~te~------------------pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 530 KADWQVRHDAVLEAGGLHIIGTER------------------HESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHHHHHHTTSEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHhhhhhhHHHhcCCcEEEEccC------------------CCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 4 69999999 999999999999999999 999999988765
No 53
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.94 E-value=1e-26 Score=288.49 Aligned_cols=302 Identities=16% Similarity=0.103 Sum_probs=184.3
Q ss_pred CCchHHHHHHHHHHHc-----CCeEEEEcCCCCcHHHHHHHHHHHhccc--------CCCEEEEeccHHHHHHHHHHHHH
Q 001046 523 LPIYKLKKELIQAVHD-----NQVLVVIGETGSGKTTQVTQYLAEAGYT--------TRGKIGCTQPRRVAAMSVAKRVA 589 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~-----~~~vIv~apTGSGKTt~~~~~lle~~~~--------~~~~Ilv~~PrR~lA~qva~rva 589 (1176)
..++++|.++++.+.+ ++.++++++||||||.++..++...... ..+++++++|+++|+.|+.....
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4678999999998865 4779999999999998876665543221 35689999999999999983222
Q ss_pred HHhCCccCCeeEEEeecccccCCCceEEEeChHHHHHHHh-----hCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHh
Q 001046 590 EEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREIL-----IDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK 664 (1176)
Q Consensus 590 ~e~g~~~G~~vGy~ir~~~~~~~~t~I~~~T~g~Llr~l~-----~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~ 664 (1176)
..++ ..++.. . .........|+++|++.|...+. .......+++||||||| |....+ ...++.++.
T Consensus 257 ~~~~----~~~~~~-~-~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH-~~~~~~--~~~~~~il~ 327 (590)
T 3h1t_A 257 TPFG----DARHKI-E-GGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECH-RGSARD--NSNWREILE 327 (590)
T ss_dssp TTTC----SSEEEC-C-C--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHHHH
T ss_pred Hhcc----hhhhhh-h-ccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCc-cccccc--hHHHHHHHH
Confidence 3333 222211 1 22334567999999999987653 22245678999999999 444321 123445555
Q ss_pred hCCCccEEEEcCCCC---HHHHHhhhcCCCeEecC-------CceeeeEEEEecC--C----------------------
Q 001046 665 RRPDLRLIVTSATLD---AEKFSGYFFNCNIFTIP-------GRTFPVEILYTKQ--P---------------------- 710 (1176)
Q Consensus 665 ~r~~~kvIlmSATl~---~~~~~~~f~~~~v~~i~-------gr~~pv~~~~~~~--~---------------------- 710 (1176)
..+..++|+||||+. ...+..+|+. +++... +...|..+..... .
T Consensus 328 ~~~~~~~l~lTATP~~~~~~~~~~~f~~-~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (590)
T 3h1t_A 328 YFEPAFQIGMTATPLREDNRDTYRYFGN-PIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGE 406 (590)
T ss_dssp HSTTSEEEEEESSCSCTTTHHHHHHSCS-CSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------------
T ss_pred hCCcceEEEeccccccccchhHHHHcCC-ceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccccccc
Confidence 566788999999984 3445666643 333211 1111221111100 0
Q ss_pred --Cchh---------HHHHHHHHHHH-HhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHH
Q 001046 711 --ESDY---------LDASLITVLQI-HLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEM 778 (1176)
Q Consensus 711 --~~~~---------~~~~l~~v~~i-~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~ 778 (1176)
..++ .......+... ....+.+++||||+++..++.++..|.+......... .-.+..+||.++. +
T Consensus 407 ~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~~i~g~~~~-~ 484 (590)
T 3h1t_A 407 YQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKH-PDYVARVTSEEGK-I 484 (590)
T ss_dssp --CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTC-TTSEEECSSTTHH-H
T ss_pred CCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccC-CCeEEEEeCCChH-H
Confidence 0000 00111112111 1224568999999999999999999977543221111 1236778998764 7
Q ss_pred HHhhcCCCCCCCce---EEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCCC
Q 001046 779 QSRIFDPAPPGKRK---VVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGP 854 (1176)
Q Consensus 779 r~~i~~~f~~g~~k---VlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g~ 854 (1176)
|..+++.|..|..+ |||||+++++|||+|++++||.++. |.|...|+||+|||||.++
T Consensus 485 r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~------------------~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 485 GKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARV------------------VNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESC------------------CCCHHHHHHHHTTSCCCBG
T ss_pred HHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEec------------------CCChHHHHHHHhhhcccCc
Confidence 88999999987765 8899999999999999999998777 8899999999999999885
No 54
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.94 E-value=3.7e-26 Score=281.77 Aligned_cols=310 Identities=17% Similarity=0.139 Sum_probs=209.0
Q ss_pred cCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeE
Q 001046 522 SLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVG 601 (1176)
Q Consensus 522 ~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vG 601 (1176)
.+-.++.|...+..+.+|+ |+.++||+|||.++.++++...+. +..++|+.|++.||.|.+..+... ...+|..||
T Consensus 109 G~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~-g~~v~VvTpTreLA~Qdae~m~~l-~~~lGLsv~ 184 (922)
T 1nkt_A 109 DQRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA-GNGVHIVTVNDYLAKRDSEWMGRV-HRFLGLQVG 184 (922)
T ss_dssp SCCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT-TSCEEEEESSHHHHHHHHHHHHHH-HHHTTCCEE
T ss_pred CCCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHHHH-HhhcCCeEE
Confidence 4566788999999999998 999999999999999888754443 457999999999999998765443 234455666
Q ss_pred EEeecccc----cCCCceEEEeChHHH-HHHHhhC-------CCCCCCceEEEcCCCcCCC-c---------------hh
Q 001046 602 YAIRFEDC----TGPDTVIKYMTDGML-LREILID-------DNLSQYSVIMLDEAHERTI-H---------------TD 653 (1176)
Q Consensus 602 y~ir~~~~----~~~~t~I~~~T~g~L-lr~l~~~-------~~L~~~s~IIiDEaHeR~~-~---------------~d 653 (1176)
..+...+. ....++|+|+|||.| ++.|... ..++.+.++||||||. .+ + ++
T Consensus 185 ~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDs-mLiDeartPLiiSg~~~~~~~ 263 (922)
T 1nkt_A 185 VILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDS-ILIDEARTPLIISGPADGASN 263 (922)
T ss_dssp ECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHH-HHTTGGGSCEEEEEECCCCHH
T ss_pred EEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHH-HHHhcCccceeecCCCCcchh
Confidence 43332211 112478999999999 5555432 3578899999999993 22 1 23
Q ss_pred HHHHHHHHHHhhC----------CCccEE-----------------EEcCCCCH--HHH-----HhhhcC---------C
Q 001046 654 VLFGLLKQLVKRR----------PDLRLI-----------------VTSATLDA--EKF-----SGYFFN---------C 690 (1176)
Q Consensus 654 ~ll~llk~~~~~r----------~~~kvI-----------------lmSATl~~--~~~-----~~~f~~---------~ 690 (1176)
++. .+..++... ++.+++ ++|||... ..+ +.++.. .
T Consensus 264 ~y~-~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg 342 (922)
T 1nkt_A 264 WYT-EFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDG 342 (922)
T ss_dssp HHH-HHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSS
T ss_pred HHH-HHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecC
Confidence 333 333444322 356677 78999741 211 111110 1
Q ss_pred CeEecC---Cce-------------------------------------------------------------eeeEEEE
Q 001046 691 NIFTIP---GRT-------------------------------------------------------------FPVEILY 706 (1176)
Q Consensus 691 ~v~~i~---gr~-------------------------------------------------------------~pv~~~~ 706 (1176)
.++.+. |+. |.+.+..
T Consensus 343 ~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~ 422 (922)
T 1nkt_A 343 EVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVS 422 (922)
T ss_dssp CEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEE
T ss_pred ceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEE
Confidence 111111 110 0011111
Q ss_pred ecCCC-------c--hh--HHHHHHHHHHHHh--cCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 001046 707 TKQPE-------S--DY--LDASLITVLQIHL--TEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSA 773 (1176)
Q Consensus 707 ~~~~~-------~--~~--~~~~l~~v~~i~~--~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~ 773 (1176)
.+... . -| .......++.... ...+.++||||++.+.++.++..|.+. ++.+..+||.
T Consensus 423 IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~---------Gi~~~vLnak 493 (922)
T 1nkt_A 423 IPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKR---------RIPHNVLNAK 493 (922)
T ss_dssp CCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT---------TCCCEEECSS
T ss_pred eCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC---------CCCEEEecCC
Confidence 11100 0 00 1122222222111 124568999999999999999999763 5667889999
Q ss_pred CCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCe--------------------------------------------
Q 001046 774 LPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGI-------------------------------------------- 809 (1176)
Q Consensus 774 l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V-------------------------------------------- 809 (1176)
....++..+.+.++.| .|+||||+|+||+||+.+
T Consensus 494 ~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA 571 (922)
T ss_dssp CHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 9888888888888887 699999999999999975
Q ss_pred --------eEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC-CcEEEEecChHHH
Q 001046 810 --------FYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESAY 866 (1176)
Q Consensus 810 --------~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~~ 866 (1176)
.+||++.+ |.|...|.||+||+||.| ||.+..+++.++.
T Consensus 572 ~~V~~~GGlhVI~te~------------------pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 572 KEVIEAGGLYVLGTER------------------HESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHTTSEEEEECSC------------------CSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred hHHHhcCCcEEEeccC------------------CCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 69999999 999999999999999999 9999988886543
No 55
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=1.5e-24 Score=233.72 Aligned_cols=175 Identities=18% Similarity=0.270 Sum_probs=151.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEc
Q 001046 718 SLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVAT 797 (1176)
Q Consensus 718 ~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVAT 797 (1176)
.+..+..++...+++++||||+++.+++.++..|... ++.+.++||+|++.+|..+++.|+.|.++|||||
T Consensus 18 k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT 88 (212)
T 3eaq_A 18 RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT 88 (212)
T ss_dssp HHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH---------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 3444455555566899999999999999999999764 5678999999999999999999999999999999
Q ss_pred chhhhccCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC-CcEEEEecChHHHh---------
Q 001046 798 NIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESAYR--------- 867 (1176)
Q Consensus 798 niae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~~~--------- 867 (1176)
+++++|||||+|++||++|+ |.|.++|+||+|||||.| +|.||.||++.+..
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~ 150 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRL------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAV 150 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSC------------------CSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHH
T ss_pred ChhhcCCCCccCcEEEECCC------------------CcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHh
Confidence 99999999999999999999 999999999999999999 89999999987621
Q ss_pred ----hhCCCCCchhhhhcChHHHHHHHHHcCCCccccC-----CCCCCCCHHHHHHHHHHH
Q 001046 868 ----NEMSPTSIPEIQRINLGFTTLTMKAMGINDLLSF-----DFMDPPSPQALISAMEQL 919 (1176)
Q Consensus 868 ----~~l~~~~~pEI~r~~L~~~~L~lk~~gi~~~~~f-----~~~~pP~~~~l~~al~~L 919 (1176)
..+.....|||.+..+..+++.++.++..+...| +|+++|+++.+..|+..|
T Consensus 151 ~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 151 GRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp SSCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCcCeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 2356677899999999999999999887665555 678889999999998776
No 56
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.89 E-value=1.4e-23 Score=272.61 Aligned_cols=314 Identities=13% Similarity=0.084 Sum_probs=206.3
Q ss_pred CCchHHHHHHHHHHHc--CCeEEEEcCCCCcHHHHHHHHHHHhccc-CCCEEEEeccHHHHHHHHHHHHHHHhCCccCCe
Q 001046 523 LPIYKLKKELIQAVHD--NQVLVVIGETGSGKTTQVTQYLAEAGYT-TRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEE 599 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~--~~~vIv~apTGSGKTt~~~~~lle~~~~-~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~ 599 (1176)
..++++|.+++..+.. +..+|++++||+|||.++..++...... ..++++|++|+ .|+.|....+.+.++..+...
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~ 230 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALF 230 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEEC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEE
Confidence 5578999999988766 4589999999999998887777654322 23489999999 999999988877776554221
Q ss_pred eEEEee----cccccCCCceEEEeChHHHHHHHhhC--CCCCCCceEEEcCCCcCCC---chhHHHHHHHHHHhhCCCcc
Q 001046 600 VGYAIR----FEDCTGPDTVIKYMTDGMLLREILID--DNLSQYSVIMLDEAHERTI---HTDVLFGLLKQLVKRRPDLR 670 (1176)
Q Consensus 600 vGy~ir----~~~~~~~~t~I~~~T~g~Llr~l~~~--~~L~~~s~IIiDEaHeR~~---~~d~ll~llk~~~~~r~~~k 670 (1176)
.|.... ..........|+++|.+.+.+..... -...++++|||||||.-.. ........++.+.. ...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~--~~~~ 308 (968)
T 3dmq_A 231 DDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE--HVPG 308 (968)
T ss_dssp CHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT--TCSS
T ss_pred ccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh--cCCc
Confidence 110000 00112235689999999885421100 0245789999999995221 11122334444432 2446
Q ss_pred EEEEcCCCCH---H---HHHhhhc-----------------------------CCC------------------------
Q 001046 671 LIVTSATLDA---E---KFSGYFF-----------------------------NCN------------------------ 691 (1176)
Q Consensus 671 vIlmSATl~~---~---~~~~~f~-----------------------------~~~------------------------ 691 (1176)
+++||||+-. . .+..++. +.+
T Consensus 309 ~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~ 388 (968)
T 3dmq_A 309 VLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQA 388 (968)
T ss_dssp EEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGG
T ss_pred EEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhc
Confidence 9999999821 1 0001000 000
Q ss_pred ----------------------------eEec---CCceeeeE---EEEecCCC--------------------------
Q 001046 692 ----------------------------IFTI---PGRTFPVE---ILYTKQPE-------------------------- 711 (1176)
Q Consensus 692 ----------------------------v~~i---~gr~~pv~---~~~~~~~~-------------------------- 711 (1176)
++.. ....+|.. .+....+.
T Consensus 389 ~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 468 (968)
T 3dmq_A 389 ANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDML 468 (968)
T ss_dssp TCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhc
Confidence 0000 00011110 01111000
Q ss_pred ---------------chhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCH
Q 001046 712 ---------------SDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPS 776 (1176)
Q Consensus 712 ---------------~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~ 776 (1176)
.......+..+..+.....++++||||+++..++.++..|.+. .++.+..+||+|++
T Consensus 469 ~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~--------~g~~~~~lhG~~~~ 540 (968)
T 3dmq_A 469 YPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER--------EGIRAAVFHEGMSI 540 (968)
T ss_dssp CSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT--------TCCCEEEECTTSCT
T ss_pred ChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH--------cCCcEEEEeCCCCH
Confidence 0001123344444444467889999999999999998888642 25678999999999
Q ss_pred HHHHhhcCCCCCCC--ceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC-
Q 001046 777 EMQSRIFDPAPPGK--RKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG- 853 (1176)
Q Consensus 777 ~~r~~i~~~f~~g~--~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g- 853 (1176)
.+|..+++.|..|. .+|||||+++++|||+|++++||+++. |.+.+.|.||+||+||.|
T Consensus 541 ~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~------------------p~~~~~~~Q~~GR~~R~Gq 602 (968)
T 3dmq_A 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDL------------------PFNPDLLEQRIGRLDRIGQ 602 (968)
T ss_dssp THHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSC------------------CSSHHHHHHHHHTTSCSSS
T ss_pred HHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecC------------------CCCHHHHHHHhhccccCCC
Confidence 99999999999998 999999999999999999999999888 899999999999999999
Q ss_pred Cc--EEEEecChHH
Q 001046 854 PG--KCYRLYTESA 865 (1176)
Q Consensus 854 ~G--~c~~L~t~~~ 865 (1176)
.| .+|+++.+..
T Consensus 603 ~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 603 AHDIQIHVPYLEKT 616 (968)
T ss_dssp CSCCEEEEEEETTS
T ss_pred CceEEEEEecCCCh
Confidence 44 4566665543
No 57
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.89 E-value=3.7e-24 Score=241.92 Aligned_cols=176 Identities=16% Similarity=0.256 Sum_probs=150.2
Q ss_pred HHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhh
Q 001046 722 VLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAE 801 (1176)
Q Consensus 722 v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae 801 (1176)
+..++....++++||||+++.+++.++..|.. .++.+.++||+|++.+|..+++.|+.|.++||||||+++
T Consensus 19 L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~---------~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~ 89 (300)
T 3i32_A 19 LSDLLYVASPDRAMVFTRTKAETEEIAQGLLR---------LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAA 89 (300)
T ss_dssp HHHHHHHHCCSSEEEECSSHHHHHHHHHHHHT---------TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTT
T ss_pred HHHHHHhcCCCCEEEEECCHHHHHHHHHHHHh---------CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhh
Confidence 33343444589999999999999999998865 257789999999999999999999999999999999999
Q ss_pred hccCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC-CcEEEEecChHHHh-------------
Q 001046 802 ASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESAYR------------- 867 (1176)
Q Consensus 802 ~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~~~------------- 867 (1176)
+|||||+|++||++|+ |.+.++|+||+|||||.| +|.||.||++.+..
T Consensus 90 ~Gidi~~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~ 151 (300)
T 3i32_A 90 RGLDIPQVDLVVHYRM------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 151 (300)
T ss_dssp CSTTCCCCSEEEESSC------------------CSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCC
T ss_pred cCccccceeEEEEcCC------------------CCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcc
Confidence 9999999999999999 999999999999999998 89999999987621
Q ss_pred hhCCCCCchhhhhcChHHHHHHHHHcCCCccccC-----CCCCCCCHHHHHHHHHHHHHcCc
Q 001046 868 NEMSPTSIPEIQRINLGFTTLTMKAMGINDLLSF-----DFMDPPSPQALISAMEQLYSLGA 924 (1176)
Q Consensus 868 ~~l~~~~~pEI~r~~L~~~~L~lk~~gi~~~~~f-----~~~~pP~~~~l~~al~~L~~lga 924 (1176)
..+.....|||++..+..+++.++.++..++..| .|+++|+.+.+..|+..|.....
T Consensus 152 ~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 152 KRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred eEeCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 2366778899999999999999998887776666 57888999999999999976654
No 58
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.88 E-value=5.8e-22 Score=255.86 Aligned_cols=312 Identities=12% Similarity=0.032 Sum_probs=203.2
Q ss_pred CCchHHHHHHHHHHHc--------------CCeEEEEcCCCCcHHHHHHHHHHHhccc--CCCEEEEeccHHHHHHHHHH
Q 001046 523 LPIYKLKKELIQAVHD--------------NQVLVVIGETGSGKTTQVTQYLAEAGYT--TRGKIGCTQPRRVAAMSVAK 586 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~--------------~~~vIv~apTGSGKTt~~~~~lle~~~~--~~~~Ilv~~PrR~lA~qva~ 586 (1176)
...+++|.++++.+.. ++..+++++||||||.++ .+++..... ...+++|++||++|+.|+..
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 4467899999998754 368999999999999887 344443222 23589999999999999988
Q ss_pred HHHHHhCCccCCeeEEEee-c-ccccCCCceEEEeChHHHHHHHhhCC---CCCCCceEEEcCCCcCCCchhHHHHHHHH
Q 001046 587 RVAEEFGCRLGEEVGYAIR-F-EDCTGPDTVIKYMTDGMLLREILIDD---NLSQYSVIMLDEAHERTIHTDVLFGLLKQ 661 (1176)
Q Consensus 587 rva~e~g~~~G~~vGy~ir-~-~~~~~~~t~I~~~T~g~Llr~l~~~~---~L~~~s~IIiDEaHeR~~~~d~ll~llk~ 661 (1176)
.+.......+.. +.... . .........|+|+|++.|...+.... .+..+.+||+|||| |+...+. .+.
T Consensus 349 ~f~~f~~~~v~~--~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAH-rs~~~~~----~~~ 421 (1038)
T 2w00_A 349 EYQRFSPDSVNG--SENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECH-RSQFGEA----QKN 421 (1038)
T ss_dssp HHHTTSTTCSSS--SCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCC-TTHHHHH----HHH
T ss_pred HHHHhccccccc--ccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccc-hhcchHH----HHH
Confidence 775432221110 00000 0 01113467899999999988765432 45678999999999 6654432 344
Q ss_pred HHhhCCCccEEEEcCCCCH-------HHHHhhhcCCCeEec-------CCceeeeEEEEecCCC---------c------
Q 001046 662 LVKRRPDLRLIVTSATLDA-------EKFSGYFFNCNIFTI-------PGRTFPVEILYTKQPE---------S------ 712 (1176)
Q Consensus 662 ~~~~r~~~kvIlmSATl~~-------~~~~~~f~~~~v~~i-------~gr~~pv~~~~~~~~~---------~------ 712 (1176)
+....|+.++|+||||+.. .....+|+. ++... .|-..|+.+.|..... .
T Consensus 422 I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~-~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~ 500 (1038)
T 2w00_A 422 LKKKFKRYYQFGFTGTPIFPENALGSETTASVFGR-ELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSA 500 (1038)
T ss_dssp HHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCS-EEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHH
T ss_pred HHHhCCcccEEEEeCCccccccchhhhHHHHHhCC-eeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHH
Confidence 4556788999999999942 244556643 33322 2445566665543110 0
Q ss_pred ----------hhHHHHHHHHHHHHhc--------CCCCCEEEEeCCHHHHHHHHHHHHHHHhcc---CCCCCCeEE-EEe
Q 001046 713 ----------DYLDASLITVLQIHLT--------EPEGDILLFLTGQEEIDFACQSLYERMKGL---GKNVPELII-LPV 770 (1176)
Q Consensus 713 ----------~~~~~~l~~v~~i~~~--------~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l---~~~~~~~~v-~~l 770 (1176)
..+...+..++..+.. ..++++||||+++..+..++..|.+..... ......+.+ +.+
T Consensus 501 i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~ 580 (1038)
T 2w00_A 501 AENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIF 580 (1038)
T ss_dssp TCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEEC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEE
Confidence 0011112222221111 134689999999999999999998765321 011122333 344
Q ss_pred cCC----------C----------CHH-----------------------------HHHhhcCCCCCCCceEEEEcchhh
Q 001046 771 YSA----------L----------PSE-----------------------------MQSRIFDPAPPGKRKVVVATNIAE 801 (1176)
Q Consensus 771 hs~----------l----------~~~-----------------------------~r~~i~~~f~~g~~kVlVATniae 801 (1176)
|++ + ++. .|..+.+.|+.|..+|||+|+++.
T Consensus 581 s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~ll 660 (1038)
T 2w00_A 581 SFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFL 660 (1038)
T ss_dssp CCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTS
T ss_pred eCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHH
Confidence 432 2 221 367788889999999999999999
Q ss_pred hccCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCCC-----cEEEEecC
Q 001046 802 ASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGP-----GKCYRLYT 862 (1176)
Q Consensus 802 ~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g~-----G~c~~L~t 862 (1176)
+|+|+|.+ .|+..+. |.+...|+||+||+||.++ |..+.+..
T Consensus 661 tGfDiP~l-~tlylDk------------------pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 661 TGFDAPTL-NTLFVDK------------------NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp SSCCCTTE-EEEEEES------------------CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred hCcCcccc-cEEEEcc------------------CCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 99999999 5565555 8899999999999999985 55555554
No 59
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.86 E-value=1.3e-21 Score=237.47 Aligned_cols=308 Identities=14% Similarity=0.099 Sum_probs=192.7
Q ss_pred CCchHHHHHHHHHH----HcCCeEEEEcCCCCcHHHHHHHHHHHhcc-cCCCEEEEeccHHHHHHHHHHHHHHHhCCccC
Q 001046 523 LPIYKLKKELIQAV----HDNQVLVVIGETGSGKTTQVTQYLAEAGY-TTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLG 597 (1176)
Q Consensus 523 LPi~~~q~~ii~ai----~~~~~vIv~apTGSGKTt~~~~~lle~~~-~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G 597 (1176)
..++++|.++++.+ ..+..+|+..+||+|||.++..++..... ...++++|++|+ .++.|..+.+.+... +
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~---~ 111 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKFAP---H 111 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCT---T
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHCC---C
Confidence 35789999998876 45788999999999999887766655321 223579999995 577888887765432 1
Q ss_pred CeeEEEeec-ccccCCCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCc-CCCchhHHHHHHHHHHhhCCCccEEEEc
Q 001046 598 EEVGYAIRF-EDCTGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHE-RTIHTDVLFGLLKQLVKRRPDLRLIVTS 675 (1176)
Q Consensus 598 ~~vGy~ir~-~~~~~~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHe-R~~~~d~ll~llk~~~~~r~~~kvIlmS 675 (1176)
..+...... .........|+++|++++.+... .....+++||+||||. +...+. ....+ ...+..+.+++|
T Consensus 112 ~~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~~kn~~~~-~~~~l----~~l~~~~~l~LT 184 (500)
T 1z63_A 112 LRFAVFHEDRSKIKLEDYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQNIKNPQTK-IFKAV----KELKSKYRIALT 184 (500)
T ss_dssp SCEEECSSSTTSCCGGGSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGGGSCTTSH-HHHHH----HTSCEEEEEEEC
T ss_pred ceEEEEecCchhccccCCcEEEeeHHHHhccch--hcCCCcCEEEEeCccccCCHhHH-HHHHH----HhhccCcEEEEe
Confidence 122211111 11112346799999999865432 1234689999999995 222221 12222 222456789999
Q ss_pred CCCC---HHHHHh---hhcC--------------------------------CCe-EecCC------ceeee---EEEEe
Q 001046 676 ATLD---AEKFSG---YFFN--------------------------------CNI-FTIPG------RTFPV---EILYT 707 (1176)
Q Consensus 676 ATl~---~~~~~~---~f~~--------------------------------~~v-~~i~g------r~~pv---~~~~~ 707 (1176)
||+- ...+.. ++.. .++ +.... ...|- ...+.
T Consensus 185 aTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~ 264 (500)
T 1z63_A 185 GTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYC 264 (500)
T ss_dssp SSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEE
T ss_pred cCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEc
Confidence 9992 222111 1000 011 10000 00111 11222
Q ss_pred cCCCc---hhH------------------------------------------------HHHHHHHHHHH--hcCCCCCE
Q 001046 708 KQPES---DYL------------------------------------------------DASLITVLQIH--LTEPEGDI 734 (1176)
Q Consensus 708 ~~~~~---~~~------------------------------------------------~~~l~~v~~i~--~~~~~g~i 734 (1176)
..... .|. ...+..+..+. ....+.++
T Consensus 265 ~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~ 344 (500)
T 1z63_A 265 NLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKI 344 (500)
T ss_dssp CCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcE
Confidence 21110 000 00111111111 12356799
Q ss_pred EEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCC-Cce-EEEEcchhhhccCCCCeeEE
Q 001046 735 LLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPG-KRK-VVVATNIAEASLTIDGIFYV 812 (1176)
Q Consensus 735 LVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g-~~k-VlVATniae~GIdIp~V~~V 812 (1176)
|||+.....++.++..|.... ++.+..+||+++..+|..+++.|..+ ..+ +|+||+++++|+|++++++|
T Consensus 345 lvF~~~~~~~~~l~~~l~~~~--------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~v 416 (500)
T 1z63_A 345 AIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRV 416 (500)
T ss_dssp EEECSCHHHHHHHHHHHHHHH--------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEE
T ss_pred EEEEehHHHHHHHHHHHHHhh--------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEE
Confidence 999999999999888887642 34567799999999999999999887 444 89999999999999999999
Q ss_pred EeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC---CcEEEEecChHHHh
Q 001046 813 IDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG---PGKCYRLYTESAYR 867 (1176)
Q Consensus 813 Id~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g---~G~c~~L~t~~~~~ 867 (1176)
|.++. |.+.+.+.||+||++|.| +..+|+|+++...+
T Consensus 417 i~~d~------------------~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tie 456 (500)
T 1z63_A 417 IHFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE 456 (500)
T ss_dssp EESSC------------------CSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHH
T ss_pred EEeCC------------------CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHH
Confidence 98888 888999999999999999 45678888876543
No 60
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.85 E-value=1.3e-20 Score=228.00 Aligned_cols=163 Identities=17% Similarity=0.228 Sum_probs=120.4
Q ss_pred cEEEEcCCCC--HHHHHhhhcCCCeEecCCcee--eeE---EEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 001046 670 RLIVTSATLD--AEKFSGYFFNCNIFTIPGRTF--PVE---ILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQE 742 (1176)
Q Consensus 670 kvIlmSATl~--~~~~~~~f~~~~v~~i~gr~~--pv~---~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ 742 (1176)
++.+||+|+. .+.|.+.+ +..++.||...- .++ ..|. ...+...+.+..+...+ ..+.++||||++++
T Consensus 411 kL~GMTGTa~te~~Ef~~iY-~l~vv~IPtnkp~~R~d~~d~vy~--t~~eK~~al~~~I~~~~--~~gqpVLVFt~S~e 485 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVY-GMEVVVIPTHKPMIRKDHDDLVFR--TQKEKYEKIVEEIEKRY--KKGQPVLVGTTSIE 485 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHS-CCCEEECCCSSCCCCEECCCEEES--SHHHHHHHHHHHHHHHH--HHTCCEEEEESSHH
T ss_pred HHeEECCCCchHHHHHHHHh-CCeEEEECCCCCcceeecCcEEEe--cHHHHHHHHHHHHHHHh--hCCCCEEEEECCHH
Confidence 6899999994 45666655 466777775321 111 2222 12233333333333332 23568999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCC--------CeeEEEe
Q 001046 743 EIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTID--------GIFYVID 814 (1176)
Q Consensus 743 ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp--------~V~~VId 814 (1176)
.++.++..|.+ .++....+||.....++..+...+..| .|+||||+|++|+||+ |+.+||+
T Consensus 486 ~sE~Ls~~L~~---------~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn 554 (822)
T 3jux_A 486 KSELLSSMLKK---------KGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG 554 (822)
T ss_dssp HHHHHHHHHHT---------TTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE
T ss_pred HHHHHHHHHHH---------CCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe
Confidence 99999998875 256678899997666666666666555 6999999999999998 7789999
Q ss_pred CCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC-CcEEEEecChHHH
Q 001046 815 PGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESAY 866 (1176)
Q Consensus 815 ~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~~ 866 (1176)
+.+ |.|...|.||+|||||.| ||.++.+++.++.
T Consensus 555 te~------------------Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 555 TER------------------HESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp SSC------------------CSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred cCC------------------CCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 999 999999999999999999 9999999987653
No 61
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.81 E-value=1.1e-18 Score=217.94 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=101.3
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCe
Q 001046 730 PEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGI 809 (1176)
Q Consensus 730 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V 809 (1176)
.++++||||+++..++.++..|.+. ++.+..+||++++.+|..+++.|+.|..+|||||+++++|+|+|+|
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v 508 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH---------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEV 508 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc---------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCC
Confidence 4679999999999999999998763 5667889999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCCCcEEEEecChHH
Q 001046 810 FYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESA 865 (1176)
Q Consensus 810 ~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g~G~c~~L~t~~~ 865 (1176)
++||+++..+. | .|.|..+|+||+|||||.++|.|+.++++..
T Consensus 509 ~lVI~~d~d~~-------G------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~ 551 (664)
T 1c4o_A 509 SLVAILDADKE-------G------FLRSERSLIQTIGRAARNARGEVWLYADRVS 551 (664)
T ss_dssp EEEEETTTTSC-------S------GGGSHHHHHHHHGGGTTSTTCEEEEECSSCC
T ss_pred CEEEEeCCccc-------C------CCCCHHHHHHHHCccCcCCCCEEEEEEcCCC
Confidence 99998885111 1 1889999999999999999999999997643
No 62
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.80 E-value=1.1e-18 Score=218.14 Aligned_cols=309 Identities=15% Similarity=0.157 Sum_probs=199.8
Q ss_pred CchHHHHHHHHHHH---------cCCeEEEEcCCCCcHHHHHHHHHHHhccc------CCCEEEEeccHHHHHHHHHHHH
Q 001046 524 PIYKLKKELIQAVH---------DNQVLVVIGETGSGKTTQVTQYLAEAGYT------TRGKIGCTQPRRVAAMSVAKRV 588 (1176)
Q Consensus 524 Pi~~~q~~ii~ai~---------~~~~vIv~apTGSGKTt~~~~~lle~~~~------~~~~Ilv~~PrR~lA~qva~rv 588 (1176)
.+++||.+.+..+. .+...|+..+||+|||.++..++...... ..++++|+.|+ .++.|..+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 57899999999873 45679999999999998887777653211 12468999997 6777888878
Q ss_pred HHHhCCccCCeeEEEeecc--------c-----ccCCCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCc-CCCchhH
Q 001046 589 AEEFGCRLGEEVGYAIRFE--------D-----CTGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHE-RTIHTDV 654 (1176)
Q Consensus 589 a~e~g~~~G~~vGy~ir~~--------~-----~~~~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHe-R~~~~d~ 654 (1176)
.+..+..+. .+.+.-... . .......|+++|.+++..... ......+++||+||||. +...+..
T Consensus 134 ~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~-~l~~~~~~~vI~DEaH~ikn~~~~~ 211 (644)
T 1z3i_X 134 GKWLGGRVQ-PVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE-VLHKGKVGLVICDEGHRLKNSDNQT 211 (644)
T ss_dssp HHHHGGGCC-EEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT-TTTTSCCCEEEETTGGGCCTTCHHH
T ss_pred HHHcCCCee-EEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH-HhhcCCccEEEEECceecCChhhHH
Confidence 776654221 122110000 0 001246799999999876431 11235789999999994 2222222
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCCHH---------------------HHHhhhcC---------C--------------
Q 001046 655 LFGLLKQLVKRRPDLRLIVTSATLDAE---------------------KFSGYFFN---------C-------------- 690 (1176)
Q Consensus 655 ll~llk~~~~~r~~~kvIlmSATl~~~---------------------~~~~~f~~---------~-------------- 690 (1176)
...+..+ ...+.|++|||+-.+ .|..+|.. .
T Consensus 212 -~~al~~l----~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 212 -YLALNSM----NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp -HHHHHHH----CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred -HHHHHhc----ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 2222222 345789999998211 22222210 0
Q ss_pred ------CeE-e----cCCceeeeE---EEEecCCCch---h----------------------H----------------
Q 001046 691 ------NIF-T----IPGRTFPVE---ILYTKQPESD---Y----------------------L---------------- 715 (1176)
Q Consensus 691 ------~v~-~----i~gr~~pv~---~~~~~~~~~~---~----------------------~---------------- 715 (1176)
|++ . .-....|.. +.+....... | +
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 000 0 000011211 1221111000 0 0
Q ss_pred -------------------------------H---HHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCC
Q 001046 716 -------------------------------D---ASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKN 761 (1176)
Q Consensus 716 -------------------------------~---~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~ 761 (1176)
. ..+..++.......+.++|||+.....++.+...|...
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~------- 439 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR------- 439 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH-------
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC-------
Confidence 0 01111222222235679999999999999888888653
Q ss_pred CCCeEEEEecCCCCHHHHHhhcCCCCCCCc---eEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCCccccccccC
Q 001046 762 VPELIILPVYSALPSEMQSRIFDPAPPGKR---KVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPIS 838 (1176)
Q Consensus 762 ~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~---kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S 838 (1176)
++.+..+||+++..+|..+++.|..+.. .+||||.+++.|||++++++||.++. |-+
T Consensus 440 --g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~------------------~wn 499 (644)
T 1z3i_X 440 --RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDP------------------DWN 499 (644)
T ss_dssp --TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSC------------------CSS
T ss_pred --CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECC------------------CCC
Confidence 5668899999999999999999988754 48999999999999999999999888 999
Q ss_pred HHHHHHHhcccCCCC---CcEEEEecChHHHh
Q 001046 839 QASAKQRAGRAGRTG---PGKCYRLYTESAYR 867 (1176)
Q Consensus 839 ~as~~QR~GRAGR~g---~G~c~~L~t~~~~~ 867 (1176)
.+.+.|++||++|.| +..+|+|++....+
T Consensus 500 p~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiE 531 (644)
T 1z3i_X 500 PANDEQAMARVWRDGQKKTCYIYRLLSTGTIE 531 (644)
T ss_dssp HHHHHHHHTTSSSTTCCSCEEEEEEEETTSHH
T ss_pred ccHHHHHHHhhhhcCCCCceEEEEEEECCCHH
Confidence 999999999999999 45789998876544
No 63
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=8.2e-19 Score=224.49 Aligned_cols=310 Identities=15% Similarity=0.148 Sum_probs=198.6
Q ss_pred CCchHHHHHHHHHHH----cCCeEEEEcCCCCcHHHHHHHHHHHhc--ccCCCEEEEeccHHHHHHHHHHHHHHHhC-Cc
Q 001046 523 LPIYKLKKELIQAVH----DNQVLVVIGETGSGKTTQVTQYLAEAG--YTTRGKIGCTQPRRVAAMSVAKRVAEEFG-CR 595 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~----~~~~vIv~apTGSGKTt~~~~~lle~~--~~~~~~Ilv~~PrR~lA~qva~rva~e~g-~~ 595 (1176)
..++++|.+.++.+. .+...|+..+||+|||.++..++.... ....+.++|++| ..++.|....+.+... ..
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 467899999998665 788999999999999988777665431 233567899999 5566777777765542 11
Q ss_pred cCCeeEEEe-e-----cc--------cccCCCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCc-CCCchhHHHHHHH
Q 001046 596 LGEEVGYAI-R-----FE--------DCTGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHE-RTIHTDVLFGLLK 660 (1176)
Q Consensus 596 ~G~~vGy~i-r-----~~--------~~~~~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHe-R~~~~d~ll~llk 660 (1176)
+....|-.- + ++ ........|+++|.+++.+....- ....+++|||||||. +...+. +...+
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l-~~~~w~~vIvDEaH~lkn~~s~-~~~~l- 390 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL-GSIKWQFMAVDEAHRLKNAESS-LYESL- 390 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHH-HTSEEEEEEETTGGGGCCSSSH-HHHHH-
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHH-hcCCcceeehhhhhhhcCchhH-HHHHH-
Confidence 111111000 0 00 012235679999999997643211 123678999999994 223332 22222
Q ss_pred HHHhhCCCccEEEEcCCC---CHHHHH---hhhcCC-----------------------------CeE-e---------c
Q 001046 661 QLVKRRPDLRLIVTSATL---DAEKFS---GYFFNC-----------------------------NIF-T---------I 695 (1176)
Q Consensus 661 ~~~~~r~~~kvIlmSATl---~~~~~~---~~f~~~-----------------------------~v~-~---------i 695 (1176)
........+++|||+ +...+. .|+... |++ . +
T Consensus 391 ---~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~L 467 (800)
T 3mwy_W 391 ---NSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSL 467 (800)
T ss_dssp ---TTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTS
T ss_pred ---HHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhcc
Confidence 222344678999999 222221 221110 000 0 1
Q ss_pred CCceeeeEEEEecCCCc--h-h----------------------H-----------------------------------
Q 001046 696 PGRTFPVEILYTKQPES--D-Y----------------------L----------------------------------- 715 (1176)
Q Consensus 696 ~gr~~pv~~~~~~~~~~--~-~----------------------~----------------------------------- 715 (1176)
|.+. ..+.+...... . | +
T Consensus 468 P~k~--~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~ 545 (800)
T 3mwy_W 468 PSKT--ERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRE 545 (800)
T ss_dssp CCEE--EEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSH
T ss_pred CCcE--EEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHH
Confidence 1110 11112111100 0 0 0
Q ss_pred ---------HHHHHHHHHHH--hcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcC
Q 001046 716 ---------DASLITVLQIH--LTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFD 784 (1176)
Q Consensus 716 ---------~~~l~~v~~i~--~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~ 784 (1176)
...+..+..+. ....+.++|||+.....++.+...|... ++.+..+||+++..+|..+++
T Consensus 546 ~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~---------g~~~~~i~G~~~~~eR~~~i~ 616 (800)
T 3mwy_W 546 NVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK---------GINFQRLDGTVPSAQRRISID 616 (800)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH---------TCCCEEESTTSCHHHHHHHHH
T ss_pred HHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHH
Confidence 00011111111 1234679999999999988888888653 566788999999999999999
Q ss_pred CCCCCC---ceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC---CcEEE
Q 001046 785 PAPPGK---RKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG---PGKCY 858 (1176)
Q Consensus 785 ~f~~g~---~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g---~G~c~ 858 (1176)
.|..+. ..+|+||.+++.|||++++++||.++. |-+.+.+.||.||++|.| +..+|
T Consensus 617 ~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~------------------~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 678 (800)
T 3mwy_W 617 HFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDS------------------DWNPQADLQAMARAHRIGQKNHVMVY 678 (800)
T ss_dssp TTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSC------------------CSCSHHHHHHHTTTSCSSCCSCEEEE
T ss_pred HhhCCCCCceEEEEecccccCCCCccccceEEEecC------------------CCChhhHHHHHHHHHhcCCCceEEEE
Confidence 998754 359999999999999999999998888 889999999999999998 67899
Q ss_pred EecChHHHhh
Q 001046 859 RLYTESAYRN 868 (1176)
Q Consensus 859 ~L~t~~~~~~ 868 (1176)
+|+++...+.
T Consensus 679 rlv~~~TiEe 688 (800)
T 3mwy_W 679 RLVSKDTVEE 688 (800)
T ss_dssp EEEETTSHHH
T ss_pred EEecCCCHHH
Confidence 9999876543
No 64
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=188.19 Aligned_cols=167 Identities=18% Similarity=0.141 Sum_probs=119.6
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc--------CCCEEEEeccHHHHHHHHHHHHHHHhCCc
Q 001046 524 PIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT--------TRGKIGCTQPRRVAAMSVAKRVAEEFGCR 595 (1176)
Q Consensus 524 Pi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~--------~~~~Ilv~~PrR~lA~qva~rva~e~g~~ 595 (1176)
..+++|.++++.+.++++++++||||||||+++..+++..... .+.+++|++|+++||.|+++++.....
T Consensus 42 ~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-- 119 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSY-- 119 (228)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcc--
Confidence 5678999999999999999999999999999988887764332 355799999999999999998766532
Q ss_pred cCCeeEEEeecccc------cCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCC
Q 001046 596 LGEEVGYAIRFEDC------TGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPD 668 (1176)
Q Consensus 596 ~G~~vGy~ir~~~~------~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~ 668 (1176)
.+..++........ ...+.+|+|+|+++|+..+.... .+.++++|||||||. ....++...+.+.+....++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~-~~~~~~~~~~~~i~~~~~~~ 198 (228)
T 3iuy_A 120 KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADK-MLDMEFEPQIRKILLDVRPD 198 (228)
T ss_dssp TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHH-HHHTTCHHHHHHHHHHSCSS
T ss_pred cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHH-HhccchHHHHHHHHHhCCcC
Confidence 22233322221111 12456899999999999887665 589999999999993 33333333333333345678
Q ss_pred ccEEEEcCCCC--HHHHHhhhcCCCeE
Q 001046 669 LRLIVTSATLD--AEKFSGYFFNCNIF 693 (1176)
Q Consensus 669 ~kvIlmSATl~--~~~~~~~f~~~~v~ 693 (1176)
.++|+||||++ ...+...+...|++
T Consensus 199 ~~~l~~SAT~~~~~~~~~~~~l~~p~~ 225 (228)
T 3iuy_A 199 RQTVMTSATWPDTVRQLALSYLKDPMI 225 (228)
T ss_dssp CEEEEEESCCCHHHHHHHHTTCSSCEE
T ss_pred CeEEEEEeeCCHHHHHHHHHHCCCCEE
Confidence 99999999997 45666666555543
No 65
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.78 E-value=9.7e-18 Score=209.44 Aligned_cols=115 Identities=21% Similarity=0.178 Sum_probs=101.7
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCC
Q 001046 729 EPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDG 808 (1176)
Q Consensus 729 ~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~ 808 (1176)
..++++||||+++..++.++..|.+. ++.+..+||++++.+|..+++.|+.|..+|||||+++++|+|+|+
T Consensus 443 ~~~~~vlVf~~t~~~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~ 513 (661)
T 2d7d_A 443 ERNERVLVTTLTKKMSEDLTDYLKEI---------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPE 513 (661)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTT
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHhc---------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCC
Confidence 34679999999999999999998763 566788999999999999999999999999999999999999999
Q ss_pred eeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCCCcEEEEecChHH
Q 001046 809 IFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESA 865 (1176)
Q Consensus 809 V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g~G~c~~L~t~~~ 865 (1176)
|++||+++. ...|+ |.|..+|+||+|||||.++|.|+.++++.+
T Consensus 514 v~lVi~~d~-------d~~G~------p~s~~~~iQr~GRagR~~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 514 VSLVAILDA-------DKEGF------LRSERSLIQTIGRAARNAEGRVIMYADKIT 557 (661)
T ss_dssp EEEEEETTT-------TCCTT------TTSHHHHHHHHHTTTTSTTCEEEEECSSCC
T ss_pred CCEEEEeCc-------ccccC------CCCHHHHHHHhCcccCCCCCEEEEEEeCCC
Confidence 999998886 11121 789999999999999999999999998753
No 66
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=194.51 Aligned_cols=169 Identities=18% Similarity=0.129 Sum_probs=124.0
Q ss_pred CCchHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHHHHHHHhcccC--CCEEEEeccHHHHHHHHHHHHHHHhCCccCC
Q 001046 523 LPIYKLKKELIQAVHDN--QVLVVIGETGSGKTTQVTQYLAEAGYTT--RGKIGCTQPRRVAAMSVAKRVAEEFGCRLGE 598 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~--~~vIv~apTGSGKTt~~~~~lle~~~~~--~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~ 598 (1176)
-..+++|.++++.+..+ ++++++||||||||+++.++++...... +.+++|+.|+|+||.|++..+........+.
T Consensus 113 ~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~ 192 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 192 (300)
T ss_dssp CSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCc
Confidence 34568899999999987 9999999999999999999998875443 3379999999999999998765544333345
Q ss_pred eeEEEeecccc---cCCCceEEEeChHHHHHHHhhCC--CCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-hCCCccEE
Q 001046 599 EVGYAIRFEDC---TGPDTVIKYMTDGMLLREILIDD--NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK-RRPDLRLI 672 (1176)
Q Consensus 599 ~vGy~ir~~~~---~~~~t~I~~~T~g~Llr~l~~~~--~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~-~r~~~kvI 672 (1176)
.+++.+..... .....+|+|+|||+|+..+.... .+.++++|||||||. .+....+...+..+.. ..++.++|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~-l~~~~~~~~~~~~i~~~~~~~~q~i 271 (300)
T 3fmo_B 193 KLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV-MIATQGHQDQSIRIQRMLPRNCQML 271 (300)
T ss_dssp CEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH-HHHSTTHHHHHHHHHTTSCTTCEEE
T ss_pred EEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH-HhhccCcHHHHHHHHHhCCCCCEEE
Confidence 55555544332 23456899999999999987633 588999999999993 3321122233333333 45679999
Q ss_pred EEcCCCC--HHHHHhhhcCCCe
Q 001046 673 VTSATLD--AEKFSGYFFNCNI 692 (1176)
Q Consensus 673 lmSATl~--~~~~~~~f~~~~v 692 (1176)
+||||++ ...|+..|...|+
T Consensus 272 ~~SAT~~~~v~~~a~~~l~~p~ 293 (300)
T 3fmo_B 272 LFSATFEDSVWKFAQKVVPDPN 293 (300)
T ss_dssp EEESCCCHHHHHHHHHHSSSCE
T ss_pred EEeccCCHHHHHHHHHHCCCCe
Confidence 9999996 5567777665554
No 67
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.76 E-value=3.4e-18 Score=188.56 Aligned_cols=170 Identities=21% Similarity=0.178 Sum_probs=124.5
Q ss_pred cCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccC--CCEEEEeccHHHHHHHHHHHHHHHhCCccCCe
Q 001046 522 SLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTT--RGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEE 599 (1176)
Q Consensus 522 ~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~--~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~ 599 (1176)
-...+++|.++++.+.++++++++||||||||+++.++++...... +.+++|++|+|+||.|+++.+.... ...|..
T Consensus 63 ~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~-~~~~~~ 141 (249)
T 3ber_A 63 WTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALG-SSIGVQ 141 (249)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHH-GGGTCC
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHh-ccCCee
Confidence 3467899999999999999999999999999999998888754332 3579999999999999998875543 333444
Q ss_pred eEEEeeccc------ccCCCceEEEeChHHHHHHHhhCC--CCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccE
Q 001046 600 VGYAIRFED------CTGPDTVIKYMTDGMLLREILIDD--NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRL 671 (1176)
Q Consensus 600 vGy~ir~~~------~~~~~t~I~~~T~g~Llr~l~~~~--~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kv 671 (1176)
++....... ....++.|+|+|+++|++.+.... .+.++++||||||| +....++...+.+.+....++.++
T Consensus 142 ~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah-~l~~~~~~~~l~~i~~~~~~~~~~ 220 (249)
T 3ber_A 142 SAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD-RILNMDFETEVDKILKVIPRDRKT 220 (249)
T ss_dssp EEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH-HHHHTTCHHHHHHHHHSSCSSSEE
T ss_pred EEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh-hhhccChHHHHHHHHHhCCCCCeE
Confidence 443332211 112467999999999999887643 68899999999999 444444443333333334568999
Q ss_pred EEEcCCCC--HHHHHhhhcCCCeE
Q 001046 672 IVTSATLD--AEKFSGYFFNCNIF 693 (1176)
Q Consensus 672 IlmSATl~--~~~~~~~f~~~~v~ 693 (1176)
|+||||++ ...+...+...|+.
T Consensus 221 l~~SAT~~~~v~~~~~~~l~~p~~ 244 (249)
T 3ber_A 221 FLFSATMTKKVQKLQRAALKNPVK 244 (249)
T ss_dssp EEEESSCCHHHHHHHHHHCSSCEE
T ss_pred EEEeccCCHHHHHHHHHHCCCCEE
Confidence 99999997 44566666555543
No 68
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.76 E-value=4.9e-18 Score=183.52 Aligned_cols=174 Identities=16% Similarity=0.141 Sum_probs=118.8
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc--CCCEEEEeccHHHHHHHHHHHHHHHhCCccCCee
Q 001046 523 LPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT--TRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEV 600 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~--~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~v 600 (1176)
-..+++|.++++.+.+++++++++|||||||+++..+++..... .+.+++|++|+++|+.|+++.+.... ...+..+
T Consensus 35 ~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~ 113 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA-FHMDIKV 113 (224)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT-TTSCCCE
T ss_pred CCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHh-cccCceE
Confidence 35789999999999999999999999999999988888876432 24589999999999999999876543 3334344
Q ss_pred EEEeeccc-----ccCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEE
Q 001046 601 GYAIRFED-----CTGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVT 674 (1176)
Q Consensus 601 Gy~ir~~~-----~~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlm 674 (1176)
+....... ......+|+++|++.|++.+.... .+.++++|||||||. ....++...+...+....++.++|+|
T Consensus 114 ~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~-~~~~~~~~~l~~i~~~~~~~~~~i~l 192 (224)
T 1qde_A 114 HACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE-MLSSGFKEQIYQIFTLLPPTTQVVLL 192 (224)
T ss_dssp EEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HHHTTCHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhH-HhhhhhHHHHHHHHHhCCccCeEEEE
Confidence 33222211 111347899999999998887654 688999999999993 22222222222222234568899999
Q ss_pred cCCCCH--HHHHhhhcCCC-eEecCCc
Q 001046 675 SATLDA--EKFSGYFFNCN-IFTIPGR 698 (1176)
Q Consensus 675 SATl~~--~~~~~~f~~~~-v~~i~gr 698 (1176)
|||++. ..+...|...| .+.+.+.
T Consensus 193 SAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 193 SATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp ESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred EeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999974 45555444444 4444443
No 69
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=192.30 Aligned_cols=164 Identities=20% Similarity=0.186 Sum_probs=120.1
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc------CCCEEEEeccHHHHHHHHHHHHHHHhCCccC
Q 001046 524 PIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT------TRGKIGCTQPRRVAAMSVAKRVAEEFGCRLG 597 (1176)
Q Consensus 524 Pi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~------~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G 597 (1176)
..+++|.++++.+..+++++++||||||||+++.++++..... .+.+++|++|+|+||.|+++.+.+.. ...+
T Consensus 76 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~-~~~~ 154 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELM-THHV 154 (262)
T ss_dssp BCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT-TTCC
T ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHH-hhcC
Confidence 3678999999999999999999999999999988888765332 35679999999999999999876543 4455
Q ss_pred CeeEEEeecccc------cCCCceEEEeChHHHHHHHhhCC--CCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-hCCC
Q 001046 598 EEVGYAIRFEDC------TGPDTVIKYMTDGMLLREILIDD--NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK-RRPD 668 (1176)
Q Consensus 598 ~~vGy~ir~~~~------~~~~t~I~~~T~g~Llr~l~~~~--~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~-~r~~ 668 (1176)
..++........ ...+.+|+|+|||+|+..+.... .+.++++||||||| +....++... +..++. ..++
T Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah-~l~~~~~~~~-l~~i~~~~~~~ 232 (262)
T 3ly5_A 155 HTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD-RILDVGFEEE-LKQIIKLLPTR 232 (262)
T ss_dssp SCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH-HHHHTTCHHH-HHHHHHHSCSS
T ss_pred ceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH-HHhhhhHHHH-HHHHHHhCCCC
Confidence 555543332211 11347899999999999888765 68899999999999 3333222222 333333 4467
Q ss_pred ccEEEEcCCCC--HHHHHhhhcCC
Q 001046 669 LRLIVTSATLD--AEKFSGYFFNC 690 (1176)
Q Consensus 669 ~kvIlmSATl~--~~~~~~~f~~~ 690 (1176)
.++|+||||++ ...+...+...
T Consensus 233 ~q~l~~SAT~~~~v~~~~~~~l~~ 256 (262)
T 3ly5_A 233 RQTMLFSATQTRKVEDLARISLKK 256 (262)
T ss_dssp SEEEEECSSCCHHHHHHHHHHCSS
T ss_pred CeEEEEEecCCHHHHHHHHHHcCC
Confidence 89999999996 45666655443
No 70
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.76 E-value=8.4e-18 Score=179.14 Aligned_cols=167 Identities=17% Similarity=0.155 Sum_probs=121.1
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc--CCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeE
Q 001046 524 PIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT--TRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVG 601 (1176)
Q Consensus 524 Pi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~--~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vG 601 (1176)
..+++|.++++++.+++++++++|||||||.++..+++..... .+.++++++|+++|+.|+++.+........+..++
T Consensus 25 ~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 104 (206)
T 1vec_A 25 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVM 104 (206)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEE
T ss_pred CCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEE
Confidence 4678999999999999999999999999999999888876433 24479999999999999999876654322234444
Q ss_pred EEeeccc------ccCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-hCCCccEEE
Q 001046 602 YAIRFED------CTGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK-RRPDLRLIV 673 (1176)
Q Consensus 602 y~ir~~~------~~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~-~r~~~kvIl 673 (1176)
....... ......+|+++|++.|+..+.... .+.++++|||||||. ....++ ...+..+.. ..++.++|+
T Consensus 105 ~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~-~~~~~~-~~~l~~i~~~~~~~~~~l~ 182 (206)
T 1vec_A 105 ATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK-LLSQDF-VQIMEDIILTLPKNRQILL 182 (206)
T ss_dssp EECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH-HTSTTT-HHHHHHHHHHSCTTCEEEE
T ss_pred EEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH-hHhhCc-HHHHHHHHHhCCccceEEE
Confidence 3322211 123467899999999998887654 688999999999994 223333 233444444 334899999
Q ss_pred EcCCCC--HHHHHhhhcCCCe
Q 001046 674 TSATLD--AEKFSGYFFNCNI 692 (1176)
Q Consensus 674 mSATl~--~~~~~~~f~~~~v 692 (1176)
||||++ ...+...+.+.|+
T Consensus 183 ~SAT~~~~~~~~~~~~l~~p~ 203 (206)
T 1vec_A 183 YSATFPLSVQKFMNSHLEKPY 203 (206)
T ss_dssp EESCCCHHHHHHHHHHCSSCE
T ss_pred EEeeCCHHHHHHHHHHcCCCe
Confidence 999996 3455555555554
No 71
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.76 E-value=7.1e-18 Score=185.08 Aligned_cols=169 Identities=17% Similarity=0.106 Sum_probs=121.6
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc---CCCEEEEeccHHHHHHHHHHHHHHHhCCccCCee
Q 001046 524 PIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT---TRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEV 600 (1176)
Q Consensus 524 Pi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~---~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~v 600 (1176)
..+++|.++++++.++++++++||||||||+++..+++..... .+.+++|++|+++||.|+++.+.+.. ...|..+
T Consensus 51 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~ 129 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKIS-EGTGFRI 129 (245)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHT-TTSCCCE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHh-cccCceE
Confidence 4789999999999999999999999999999998888876443 34479999999999999999875543 3344444
Q ss_pred EEEee-------cccccCCCceEEEeChHHHHHHHhhCC---CCCCCceEEEcCCCcCCCc--hhHHHHHHHHHHh-hCC
Q 001046 601 GYAIR-------FEDCTGPDTVIKYMTDGMLLREILIDD---NLSQYSVIMLDEAHERTIH--TDVLFGLLKQLVK-RRP 667 (1176)
Q Consensus 601 Gy~ir-------~~~~~~~~t~I~~~T~g~Llr~l~~~~---~L~~~s~IIiDEaHeR~~~--~d~ll~llk~~~~-~r~ 667 (1176)
+.... +......+.+|+|+|+++|+..+.... .+.++++|||||||...-. .++...+...+.. ..+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~ 209 (245)
T 3dkp_A 130 HMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSH 209 (245)
T ss_dssp ECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCT
T ss_pred EEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCC
Confidence 32211 112234567999999999999987763 6889999999999952110 2333333333222 245
Q ss_pred CccEEEEcCCCC--HHHHHhhhcCCCeE
Q 001046 668 DLRLIVTSATLD--AEKFSGYFFNCNIF 693 (1176)
Q Consensus 668 ~~kvIlmSATl~--~~~~~~~f~~~~v~ 693 (1176)
+.++++||||++ ...+...+.+.|++
T Consensus 210 ~~~~~~~SAT~~~~v~~~~~~~l~~p~~ 237 (245)
T 3dkp_A 210 KVRRAMFSATFAYDVEQWCKLNLDNVIS 237 (245)
T ss_dssp TCEEEEEESSCCHHHHHHHHHHSSSCEE
T ss_pred CcEEEEEeccCCHHHHHHHHHhCCCCEE
Confidence 789999999996 45666666555543
No 72
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.76 E-value=6.1e-18 Score=184.93 Aligned_cols=167 Identities=16% Similarity=0.149 Sum_probs=118.1
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc--CCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEE
Q 001046 525 IYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT--TRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGY 602 (1176)
Q Consensus 525 i~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~--~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy 602 (1176)
.+++|.++++.+.++++++++||||||||+++.++++..... .+.+++|++|+++||.|+++.+.. ++...+..++.
T Consensus 53 ~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~ 131 (237)
T 3bor_A 53 PSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILA-LGDYMGATCHA 131 (237)
T ss_dssp CCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHH-HhhhcCceEEE
Confidence 679999999999999999999999999999999998886432 345899999999999999998755 44444444443
Q ss_pred Eeecccc-------cCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEE
Q 001046 603 AIRFEDC-------TGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVT 674 (1176)
Q Consensus 603 ~ir~~~~-------~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlm 674 (1176)
.+..... ......|+|+|++.|++.+.... .+.++++|||||||. ....++...+...+....++.++|+|
T Consensus 132 ~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~~~~~~~~~l~~i~~~~~~~~~~i~~ 210 (237)
T 3bor_A 132 CIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADE-MLSRGFKDQIYEIFQKLNTSIQVVLL 210 (237)
T ss_dssp ECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHH-HHHTTCHHHHHHHHHHSCTTCEEEEE
T ss_pred EECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchH-hhccCcHHHHHHHHHhCCCCCeEEEE
Confidence 2222111 11237899999999999887654 578899999999994 22222221222222224568899999
Q ss_pred cCCCC--HHHHHhhhcCCCeE
Q 001046 675 SATLD--AEKFSGYFFNCNIF 693 (1176)
Q Consensus 675 SATl~--~~~~~~~f~~~~v~ 693 (1176)
|||++ ...+...|...|+.
T Consensus 211 SAT~~~~~~~~~~~~l~~p~~ 231 (237)
T 3bor_A 211 SATMPTDVLEVTKKFMRDPIR 231 (237)
T ss_dssp CSSCCHHHHHHHHHHCSSCEE
T ss_pred EEecCHHHHHHHHHHCCCCEE
Confidence 99996 44555555555543
No 73
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.75 E-value=8.8e-18 Score=183.26 Aligned_cols=171 Identities=19% Similarity=0.165 Sum_probs=121.8
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcc------cCCCEEEEeccHHHHHHHHHHHHHHHhCCcc
Q 001046 523 LPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGY------TTRGKIGCTQPRRVAAMSVAKRVAEEFGCRL 596 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~------~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~ 596 (1176)
-..+++|.++++++.+++++++++|||||||+++..+++.... ..+.+++|++|+++||.|+++.+.. ++...
T Consensus 46 ~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~ 124 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRK-VGKNH 124 (236)
T ss_dssp CBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHH-HTTTS
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHH-HhCCC
Confidence 4567999999999999999999999999999998888876532 2355899999999999999997754 44444
Q ss_pred CCeeEEEeeccc-----ccCCCceEEEeChHHHHHHHhhC--CCCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-hCCC
Q 001046 597 GEEVGYAIRFED-----CTGPDTVIKYMTDGMLLREILID--DNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK-RRPD 668 (1176)
Q Consensus 597 G~~vGy~ir~~~-----~~~~~t~I~~~T~g~Llr~l~~~--~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~-~r~~ 668 (1176)
+..++....... ....+.+|+|+|++.|++.+... ..+.++++||||||| +....++. ..+..++. ..++
T Consensus 125 ~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah-~~~~~~~~-~~~~~i~~~~~~~ 202 (236)
T 2pl3_A 125 DFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD-RILDMGFA-DTMNAVIENLPKK 202 (236)
T ss_dssp SCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH-HHHHTTTH-HHHHHHHHTSCTT
T ss_pred CeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH-HHhcCCcH-HHHHHHHHhCCCC
Confidence 444543332211 11146789999999999988765 367899999999999 33332222 22333333 3457
Q ss_pred ccEEEEcCCCC--HHHHHhhhcCCC-eEecC
Q 001046 669 LRLIVTSATLD--AEKFSGYFFNCN-IFTIP 696 (1176)
Q Consensus 669 ~kvIlmSATl~--~~~~~~~f~~~~-v~~i~ 696 (1176)
.++|+||||++ ...+...+...| .+.+.
T Consensus 203 ~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 203 RQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp SEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred CeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 89999999996 445666555444 34443
No 74
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=179.10 Aligned_cols=135 Identities=16% Similarity=0.282 Sum_probs=110.5
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHh
Q 001046 702 VEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSR 781 (1176)
Q Consensus 702 v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~ 781 (1176)
+..+|...+..+ ..+..+..+....+.+++||||+++..++.++..|.+ .++.+..+||+|++.+|..
T Consensus 8 i~q~~~~~~~~~---~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~---------~~~~~~~~~g~~~~~~R~~ 75 (175)
T 2rb4_A 8 IRQYYVLCEHRK---DKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQ---------DGHQVSLLSGELTVEQRAS 75 (175)
T ss_dssp EEEEEEECSSHH---HHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHT---------TTCCEEEECSSCCHHHHHH
T ss_pred ceEEEEEcCChH---hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH---------cCCcEEEEeCCCCHHHHHH
Confidence 555555544322 2344455555556678999999999999999988865 2567899999999999999
Q ss_pred hcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCCccccccc------cCHHHHHHHhcccCCCC-C
Q 001046 782 IFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITP------ISQASAKQRAGRAGRTG-P 854 (1176)
Q Consensus 782 i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p------~S~as~~QR~GRAGR~g-~ 854 (1176)
+++.|+.|..+|||||+++++|+|+|++++||++++ | .+..+|+||+|||||.| +
T Consensus 76 ~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~------------------p~~~~~~~~~~~~~qr~GR~gR~g~~ 137 (175)
T 2rb4_A 76 IIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDL------------------PVKQGEEPDYETYLHRIGRTGRFGKK 137 (175)
T ss_dssp HHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSC------------------CC--CCSCCHHHHHHHHCBC----CC
T ss_pred HHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCC------------------CCCccccCCHHHHHHHhcccccCCCC
Confidence 999999999999999999999999999999999998 6 89999999999999998 8
Q ss_pred cEEEEecChHHH
Q 001046 855 GKCYRLYTESAY 866 (1176)
Q Consensus 855 G~c~~L~t~~~~ 866 (1176)
|.||.|+++.+.
T Consensus 138 g~~~~~~~~~~~ 149 (175)
T 2rb4_A 138 GLAFNMIEVDEL 149 (175)
T ss_dssp EEEEEEECGGGH
T ss_pred ceEEEEEccchH
Confidence 999999998764
No 75
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.75 E-value=2.9e-18 Score=176.61 Aligned_cols=134 Identities=21% Similarity=0.314 Sum_probs=112.5
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHh
Q 001046 702 VEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSR 781 (1176)
Q Consensus 702 v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~ 781 (1176)
+..+|...+..+- +..+..+.....++++||||+++..++.++..|.+. ++.+..+||+|++.+|..
T Consensus 10 i~~~~~~~~~~~K----~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 10 IEHAVIQVREENK----FSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDL---------GYPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp EEEEEEECCGGGH----HHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHH
T ss_pred ceEEEEECChHHH----HHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHH
Confidence 4555554443332 223333333346789999999999999999988762 567899999999999999
Q ss_pred hcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC-CcEEEEe
Q 001046 782 IFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRL 860 (1176)
Q Consensus 782 i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L 860 (1176)
+++.|+.|..+|||||+++++|+|+|++++||++++ |.+..+|.||+|||||.| +|.||.|
T Consensus 77 ~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~ 138 (163)
T 2hjv_A 77 VMNEFKRGEYRYLVATDVAARGIDIENISLVINYDL------------------PLEKESYVHRTGRTGRAGNKGKAISF 138 (163)
T ss_dssp HHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSC------------------CSSHHHHHHHTTTSSCTTCCEEEEEE
T ss_pred HHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCC------------------CCCHHHHHHhccccCcCCCCceEEEE
Confidence 999999999999999999999999999999999998 999999999999999998 8999999
Q ss_pred cChHHH
Q 001046 861 YTESAY 866 (1176)
Q Consensus 861 ~t~~~~ 866 (1176)
+++.+.
T Consensus 139 ~~~~~~ 144 (163)
T 2hjv_A 139 VTAFEK 144 (163)
T ss_dssp ECGGGH
T ss_pred ecHHHH
Confidence 997654
No 76
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.75 E-value=3.2e-18 Score=187.75 Aligned_cols=165 Identities=19% Similarity=0.113 Sum_probs=118.9
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc-------CCCEEEEeccHHHHHHHHHHHHHHHhCCccC
Q 001046 525 IYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT-------TRGKIGCTQPRRVAAMSVAKRVAEEFGCRLG 597 (1176)
Q Consensus 525 i~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~-------~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G 597 (1176)
.+++|.++++++.++++++++||||||||+++..+++..... .+++++|++|+|+||.|+++.+.... ...|
T Consensus 52 ~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~-~~~~ 130 (242)
T 3fe2_A 52 PTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC-RACR 130 (242)
T ss_dssp CCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH-HHTT
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH-hhcC
Confidence 678999999999999999999999999999988888775332 34579999999999999988765432 2233
Q ss_pred CeeEEEeecccc------cCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-hCCCc
Q 001046 598 EEVGYAIRFEDC------TGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK-RRPDL 669 (1176)
Q Consensus 598 ~~vGy~ir~~~~------~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~-~r~~~ 669 (1176)
..++........ ...+.+|+|+||++|+..+.... .+.++++|||||||. ....++... +..++. ..++.
T Consensus 131 ~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-l~~~~~~~~-~~~i~~~~~~~~ 208 (242)
T 3fe2_A 131 LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADR-MLDMGFEPQ-IRKIVDQIRPDR 208 (242)
T ss_dssp CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHH-HHHTTCHHH-HHHHHTTSCSSC
T ss_pred ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHH-HhhhCcHHH-HHHHHHhCCccc
Confidence 334432222111 11346899999999999887665 689999999999993 222222222 233333 45789
Q ss_pred cEEEEcCCCC--HHHHHhhhcCCCe
Q 001046 670 RLIVTSATLD--AEKFSGYFFNCNI 692 (1176)
Q Consensus 670 kvIlmSATl~--~~~~~~~f~~~~v 692 (1176)
++++||||++ ...+...+...|+
T Consensus 209 q~~~~SAT~~~~~~~~~~~~l~~~~ 233 (242)
T 3fe2_A 209 QTLMWSATWPKEVRQLAEDFLKDYI 233 (242)
T ss_dssp EEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred eEEEEEeecCHHHHHHHHHHCCCCE
Confidence 9999999997 4566666655554
No 77
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.75 E-value=1.1e-17 Score=180.44 Aligned_cols=169 Identities=18% Similarity=0.137 Sum_probs=120.2
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc--CCCEEEEeccHHHHHHHHHHHHHHHhCCc---cC
Q 001046 523 LPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT--TRGKIGCTQPRRVAAMSVAKRVAEEFGCR---LG 597 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~--~~~~Ilv~~PrR~lA~qva~rva~e~g~~---~G 597 (1176)
...+++|.++++++.+++++++++|||||||+++..++++.... .+.+++|++|+++||.|+++.+.+..... .+
T Consensus 25 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 104 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRM 104 (219)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccc
Confidence 34678999999999999999999999999999999988886543 24589999999999999999876654321 13
Q ss_pred CeeEEEeeccc------ccCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-hCCCc
Q 001046 598 EEVGYAIRFED------CTGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK-RRPDL 669 (1176)
Q Consensus 598 ~~vGy~ir~~~------~~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~-~r~~~ 669 (1176)
..++....... ....+.+|+|+|++.|++.+.... .+.++++|||||||. ....++ ...+..+.. ..++.
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~~~~~~-~~~l~~i~~~~~~~~ 182 (219)
T 1q0u_A 105 IVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL-MLDMGF-ITDVDQIAARMPKDL 182 (219)
T ss_dssp CCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH-HHHTTC-HHHHHHHHHTSCTTC
T ss_pred eEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH-HhhhCh-HHHHHHHHHhCCccc
Confidence 33333222211 112357899999999998887654 578999999999994 222222 222333433 34578
Q ss_pred cEEEEcCCCC--HHHHHhhhcCCCeE
Q 001046 670 RLIVTSATLD--AEKFSGYFFNCNIF 693 (1176)
Q Consensus 670 kvIlmSATl~--~~~~~~~f~~~~v~ 693 (1176)
++|+||||++ ...+...+...|+.
T Consensus 183 ~~l~~SAT~~~~~~~~~~~~~~~p~~ 208 (219)
T 1q0u_A 183 QMLVFSATIPEKLKPFLKKYMENPTF 208 (219)
T ss_dssp EEEEEESCCCGGGHHHHHHHCSSCEE
T ss_pred EEEEEecCCCHHHHHHHHHHcCCCeE
Confidence 9999999996 34555555555543
No 78
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.75 E-value=6.7e-18 Score=183.70 Aligned_cols=167 Identities=16% Similarity=0.075 Sum_probs=118.0
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc--CCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEE
Q 001046 525 IYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT--TRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGY 602 (1176)
Q Consensus 525 i~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~--~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy 602 (1176)
.+++|.++++++.+++++++++|||||||+++.++++..... .+.+++|++|+++|+.|+++.+........+..++.
T Consensus 47 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 126 (230)
T 2oxc_A 47 PSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHV 126 (230)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEE
Confidence 679999999999999999999999999999998888876543 245899999999999999998765432222444443
Q ss_pred Eeeccc-----ccCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHhh-CCCccEEEEc
Q 001046 603 AIRFED-----CTGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKR-RPDLRLIVTS 675 (1176)
Q Consensus 603 ~ir~~~-----~~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~-r~~~kvIlmS 675 (1176)
...... ....+.+|+++|++.|+..+.... .+.++++|||||||. ....+.+...+..+... .++.++|+||
T Consensus 127 ~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~-~~~~~~~~~~~~~i~~~~~~~~~~l~lS 205 (230)
T 2oxc_A 127 FIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADK-LLEEGSFQEQINWIYSSLPASKQMLAVS 205 (230)
T ss_dssp ECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHH-HHSTTSSHHHHHHHHHHSCSSCEEEEEE
T ss_pred EeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchH-hhcCcchHHHHHHHHHhCCCCCeEEEEE
Confidence 322211 112467999999999999876554 578899999999994 22211122233333333 3478999999
Q ss_pred CCCCHH--HHHhhhcCCCe
Q 001046 676 ATLDAE--KFSGYFFNCNI 692 (1176)
Q Consensus 676 ATl~~~--~~~~~f~~~~v 692 (1176)
||++.+ .+...|.+.|+
T Consensus 206 AT~~~~~~~~~~~~~~~p~ 224 (230)
T 2oxc_A 206 ATYPEFLANALTKYMRDPT 224 (230)
T ss_dssp SCCCHHHHHHHTTTCSSCE
T ss_pred eccCHHHHHHHHHHcCCCe
Confidence 999743 44443444443
No 79
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.75 E-value=9.7e-18 Score=178.67 Aligned_cols=166 Identities=19% Similarity=0.165 Sum_probs=120.0
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc-----CCCEEEEeccHHHHHHHHHHHHHHHhCCccC
Q 001046 523 LPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT-----TRGKIGCTQPRRVAAMSVAKRVAEEFGCRLG 597 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~-----~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G 597 (1176)
...+++|.++++.+.+++++++++|||||||+++..+++..... .+.+++|++|+++|+.|+++++....+.
T Consensus 22 ~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--- 98 (207)
T 2gxq_A 22 TTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH--- 98 (207)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT---
T ss_pred CCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc---
Confidence 35689999999999999999999999999999999888886542 3557999999999999999988766532
Q ss_pred CeeEEEeeccc------ccCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-hCCCc
Q 001046 598 EEVGYAIRFED------CTGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK-RRPDL 669 (1176)
Q Consensus 598 ~~vGy~ir~~~------~~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~-~r~~~ 669 (1176)
..++....... ....+..|+++|++.+++.+.... .+.++++|||||||. .....+ ...+..++. ..++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~-~~~~~~-~~~~~~i~~~~~~~~ 176 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE-MLSMGF-EEEVEALLSATPPSR 176 (207)
T ss_dssp SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH-HHHTTC-HHHHHHHHHTSCTTS
T ss_pred ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH-hhccch-HHHHHHHHHhCCccC
Confidence 12222111111 011357899999999998887644 688999999999994 222222 222333333 44588
Q ss_pred cEEEEcCCCC--HHHHHhhhcCCCeE
Q 001046 670 RLIVTSATLD--AEKFSGYFFNCNIF 693 (1176)
Q Consensus 670 kvIlmSATl~--~~~~~~~f~~~~v~ 693 (1176)
++|+||||++ ...+.+.+.+.|++
T Consensus 177 ~~i~~SAT~~~~~~~~~~~~~~~p~~ 202 (207)
T 2gxq_A 177 QTLLFSATLPSWAKRLAERYMKNPVL 202 (207)
T ss_dssp EEEEECSSCCHHHHHHHHHHCSSCEE
T ss_pred eEEEEEEecCHHHHHHHHHHcCCCeE
Confidence 9999999997 45666666655543
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.74 E-value=2.6e-18 Score=177.27 Aligned_cols=116 Identities=17% Similarity=0.367 Sum_probs=101.5
Q ss_pred HHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhc
Q 001046 724 QIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEAS 803 (1176)
Q Consensus 724 ~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~G 803 (1176)
.+....+.+++||||+++..++.++..|.+. ++.+..+||+|++.+|..+++.|+.|..+|||||+++++|
T Consensus 23 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 93 (165)
T 1fuk_A 23 DLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 93 (165)
T ss_dssp HHHHHTTCSCEEEEESSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTT
T ss_pred HHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcC
Confidence 3333446789999999999999999998762 5678999999999999999999999999999999999999
Q ss_pred cCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC-CcEEEEecChHHH
Q 001046 804 LTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESAY 866 (1176)
Q Consensus 804 IdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~~ 866 (1176)
+|+|++++||++++ |.+..+|.||+|||||.| +|.||.|+++.+.
T Consensus 94 ~d~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~ 139 (165)
T 1fuk_A 94 IDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFGRKGVAINFVTNEDV 139 (165)
T ss_dssp CCCCSCSEEEESSC------------------CSSGGGGGGSSCSCC-----CEEEEEEETTTH
T ss_pred CCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEEEcchHH
Confidence 99999999999998 999999999999999998 8999999987654
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.73 E-value=6.3e-18 Score=175.75 Aligned_cols=132 Identities=17% Similarity=0.282 Sum_probs=112.0
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHh
Q 001046 702 VEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSR 781 (1176)
Q Consensus 702 v~~~~~~~~~~~~~~~~l~~v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~ 781 (1176)
+..+|...+..+ .+..+..+....+.+++||||+++..++.++..|... ++.+..+||+|++.+|..
T Consensus 6 i~q~~~~~~~~~----K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~~ 72 (172)
T 1t5i_A 6 LQQYYVKLKDNE----KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERLS 72 (172)
T ss_dssp CEEEEEECCGGG----HHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHH
T ss_pred eEEEEEECChHH----HHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc---------CCCEEEEECCCCHHHHHH
Confidence 445555444333 2333344444456789999999999999999998762 567899999999999999
Q ss_pred hcCCCCCCCceEEEEcchhhhccCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC-CcEEEEe
Q 001046 782 IFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRL 860 (1176)
Q Consensus 782 i~~~f~~g~~kVlVATniae~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L 860 (1176)
+++.|..|..+|||||+++++|+|+|++++||++++ |.+.++|.||+|||||.| +|.|+.|
T Consensus 73 ~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~ 134 (172)
T 1t5i_A 73 RYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITF 134 (172)
T ss_dssp HHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSC------------------CSSHHHHHHHHHHHTGGGCCCEEEEE
T ss_pred HHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECC------------------CCCHHHHHHHhcccccCCCCcEEEEE
Confidence 999999999999999999999999999999999998 999999999999999999 8999999
Q ss_pred cChH
Q 001046 861 YTES 864 (1176)
Q Consensus 861 ~t~~ 864 (1176)
++..
T Consensus 135 ~~~~ 138 (172)
T 1t5i_A 135 VSDE 138 (172)
T ss_dssp ECSH
T ss_pred EcCh
Confidence 9865
No 82
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.73 E-value=4.3e-17 Score=175.70 Aligned_cols=167 Identities=15% Similarity=0.070 Sum_probs=119.9
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccC--CCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEE
Q 001046 525 IYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTT--RGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGY 602 (1176)
Q Consensus 525 i~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~--~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy 602 (1176)
.+++|.++++.+.+++++++++|||||||+++..+++...... ..+++|++|+++|+.|+++.+........+..++.
T Consensus 37 ~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 116 (220)
T 1t6n_A 37 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV 116 (220)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 6799999999999999999999999999999999888864432 33899999999999999998765543222444443
Q ss_pred Eeecccc-------cCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-hCCCccEEE
Q 001046 603 AIRFEDC-------TGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK-RRPDLRLIV 673 (1176)
Q Consensus 603 ~ir~~~~-------~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~-~r~~~kvIl 673 (1176)
....... ......|+++|++.|+..+.... .+.++++|||||||.-.-..++ ...+..+.. ..++.++|+
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~-~~~~~~i~~~~~~~~~~i~ 195 (220)
T 1t6n_A 117 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDM-RRDVQEIFRMTPHEKQVMM 195 (220)
T ss_dssp ESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHH-HHHHHHHHHTSCSSSEEEE
T ss_pred EeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCc-HHHHHHHHHhCCCcCeEEE
Confidence 2222110 11245899999999998887654 6889999999999942212222 233444444 345789999
Q ss_pred EcCCCC--HHHHHhhhcCCCe
Q 001046 674 TSATLD--AEKFSGYFFNCNI 692 (1176)
Q Consensus 674 mSATl~--~~~~~~~f~~~~v 692 (1176)
||||++ ...+...+...|+
T Consensus 196 ~SAT~~~~~~~~~~~~~~~p~ 216 (220)
T 1t6n_A 196 FSATLSKEIRPVCRKFMQDPM 216 (220)
T ss_dssp EESCCCTTTHHHHHTTCSSCE
T ss_pred EEeecCHHHHHHHHHHcCCCe
Confidence 999995 4566655554443
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=175.33 Aligned_cols=110 Identities=22% Similarity=0.309 Sum_probs=89.0
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCe
Q 001046 730 PEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGI 809 (1176)
Q Consensus 730 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V 809 (1176)
+.+++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|+.|..+|||||+++++|+|+|++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~---------~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~ 115 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYH---------EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 115 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHH---------TTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSB
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH---------cCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccC
Confidence 578999999999999999999876 25678999999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC-CcEEEEecChHHH
Q 001046 810 FYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESAY 866 (1176)
Q Consensus 810 ~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~~ 866 (1176)
++||++++ |.+..+|.||+|||||.| +|.||.|+++.+.
T Consensus 116 ~~VI~~d~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 116 KHVINFDL------------------PSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 155 (185)
T ss_dssp SEEEESSC------------------CSSHHHHHHHHTTBCCTTSCEEEEEEECGGGG
T ss_pred CEEEEeCC------------------CCCHHHHHHHccccCCCCCCcEEEEEEchhhH
Confidence 99999998 999999999999999999 8999999998754
No 84
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.71 E-value=6.7e-17 Score=178.24 Aligned_cols=166 Identities=19% Similarity=0.166 Sum_probs=117.6
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc-----------CCCEEEEeccHHHHHHHHHHHHHHHh
Q 001046 524 PIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT-----------TRGKIGCTQPRRVAAMSVAKRVAEEF 592 (1176)
Q Consensus 524 Pi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~-----------~~~~Ilv~~PrR~lA~qva~rva~e~ 592 (1176)
..+++|.++++++.+++++++++|||||||.++..+++..... .+.+++|++|+|+||.|+++++....
T Consensus 45 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 124 (253)
T 1wrb_A 45 RPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 124 (253)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999988888775432 12479999999999999999876543
Q ss_pred CCccCCeeEEEeeccc------ccCCCceEEEeChHHHHHHHhhCC-CCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-
Q 001046 593 GCRLGEEVGYAIRFED------CTGPDTVIKYMTDGMLLREILIDD-NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK- 664 (1176)
Q Consensus 593 g~~~G~~vGy~ir~~~------~~~~~t~I~~~T~g~Llr~l~~~~-~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~- 664 (1176)
...+..++....... ....+.+|+++|+++|++.+.... .+.++++|||||||. .....+ ...+..++.
T Consensus 125 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~~~~~~-~~~~~~i~~~ 201 (253)
T 1wrb_A 125 -LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADR-MLDMGF-EPQIRKIIEE 201 (253)
T ss_dssp -TTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHH-HHHTTC-HHHHHHHHHS
T ss_pred -ccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHH-HHhCch-HHHHHHHHhh
Confidence 333333332222211 112467899999999999887655 688999999999994 221111 122333333
Q ss_pred -hCC---CccEEEEcCCCC--HHHHHhhhcCCCe
Q 001046 665 -RRP---DLRLIVTSATLD--AEKFSGYFFNCNI 692 (1176)
Q Consensus 665 -~r~---~~kvIlmSATl~--~~~~~~~f~~~~v 692 (1176)
..+ +.++|+||||++ ...+...+...|+
T Consensus 202 ~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~ 235 (253)
T 1wrb_A 202 SNMPSGINRQTLMFSATFPKEIQKLAADFLYNYI 235 (253)
T ss_dssp SCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCE
T ss_pred ccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCE
Confidence 122 678999999996 3466666655554
No 85
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=174.99 Aligned_cols=108 Identities=21% Similarity=0.347 Sum_probs=99.3
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccCCCCe
Q 001046 730 PEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGI 809 (1176)
Q Consensus 730 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GIdIp~V 809 (1176)
.++++||||+++..++.++..|... ++.+..+||++++.+|..+++.|+.|..+|||||+++++|+|+|++
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v 123 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLLK---------GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAI 123 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccC
Confidence 4578999999999999999999764 5678899999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC-CcEEEEecChH
Q 001046 810 FYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTES 864 (1176)
Q Consensus 810 ~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~ 864 (1176)
++||++++ |.+..+|+||+|||||.| +|.|+.|+++.
T Consensus 124 ~~VI~~d~------------------p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 124 QHVINYDM------------------PEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp SEEEESSC------------------CSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred CEEEEeCC------------------CCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 99999998 999999999999999999 89999999864
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.50 E-value=3.1e-18 Score=177.66 Aligned_cols=118 Identities=18% Similarity=0.245 Sum_probs=105.4
Q ss_pred HHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhh
Q 001046 722 VLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAE 801 (1176)
Q Consensus 722 v~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae 801 (1176)
+..+......+++||||+++..++.++..|... ++.+..+||+|++.+|..+++.|..|..+|||||++++
T Consensus 21 l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 91 (170)
T 2yjt_D 21 LVHLLKQPEATRSIVFVRKRERVHELANWLREA---------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAA 91 (170)
Confidence 333333445689999999999999999888652 56788999999999999999999999999999999999
Q ss_pred hccCCCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC-CcEEEEecChHHH
Q 001046 802 ASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG-PGKCYRLYTESAY 866 (1176)
Q Consensus 802 ~GIdIp~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g-~G~c~~L~t~~~~ 866 (1176)
+|+|+|++++||++++ |.|..+|.||+|||||.| +|.||.+++..+.
T Consensus 92 ~Gid~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~ 139 (170)
T 2yjt_D 92 RGIDIPDVSHVFNFDM------------------PRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 139 (170)
Confidence 9999999999999998 999999999999999999 8999999987654
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=167.61 Aligned_cols=154 Identities=18% Similarity=0.147 Sum_probs=104.1
Q ss_pred hcCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcc-----cCCCEEEEeccHHHHHHH-HHHHHHHHhCC
Q 001046 521 QSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGY-----TTRGKIGCTQPRRVAAMS-VAKRVAEEFGC 594 (1176)
Q Consensus 521 ~~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~-----~~~~~Ilv~~PrR~lA~q-va~rva~e~g~ 594 (1176)
..++++++|.++++.+.+++++++++|||+|||+++..++..... ...+++++++|+++|+.| +.+.+......
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 109 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 109 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 346789999999999999999999999999999998888776422 124689999999999999 55555444432
Q ss_pred ccCCeeEEEeecccc------cCCCceEEEeChHHHHHHHhhC-------CCCCCCceEEEcCCCcCCCchhHHHHHHHH
Q 001046 595 RLGEEVGYAIRFEDC------TGPDTVIKYMTDGMLLREILID-------DNLSQYSVIMLDEAHERTIHTDVLFGLLKQ 661 (1176)
Q Consensus 595 ~~G~~vGy~ir~~~~------~~~~t~I~~~T~g~Llr~l~~~-------~~L~~~s~IIiDEaHeR~~~~d~ll~llk~ 661 (1176)
+..++........ ......|+++|++.|...+... ..+.++++|||||||.- ....++..++..
T Consensus 110 --~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~-~~~~~~~~~~~~ 186 (216)
T 3b6e_A 110 --WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHT-NKEAVYNNIMRH 186 (216)
T ss_dssp --TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHHH
T ss_pred --CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhh-ccCCcHHHHHHH
Confidence 2223221111110 0124789999999999888764 35788999999999953 233333333333
Q ss_pred HHhhC--------------CCccEEEEcCC
Q 001046 662 LVKRR--------------PDLRLIVTSAT 677 (1176)
Q Consensus 662 ~~~~r--------------~~~kvIlmSAT 677 (1176)
++..+ ++.++|+||||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 33222 78999999998
No 88
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.65 E-value=5.2e-15 Score=182.31 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=91.3
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEE
Q 001046 523 LPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGY 602 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy 602 (1176)
+-.++.|...+..+.+|+ |..+.||+|||.++.++++...+. +..++|+.|+++||.|.+..+...+ ..+|..||.
T Consensus 78 ~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~-G~qv~VvTPTreLA~Qdae~m~~l~-~~lGLsv~~ 153 (997)
T 2ipc_A 78 MRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT-GKGVHVVTVNDYLARRDAEWMGPVY-RGLGLSVGV 153 (997)
T ss_dssp CCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT-CSCCEEEESSHHHHHHHHHHHHHHH-HTTTCCEEE
T ss_pred CCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh-CCCEEEEeCCHHHHHHHHHHHHHHH-HhcCCeEEE
Confidence 445788999999999999 899999999999998888654343 4579999999999999998665443 455666665
Q ss_pred Eeecccc----cCCCceEEEeChHHH-HHHHhhC-------CCCC---CCceEEEcCCC
Q 001046 603 AIRFEDC----TGPDTVIKYMTDGML-LREILID-------DNLS---QYSVIMLDEAH 646 (1176)
Q Consensus 603 ~ir~~~~----~~~~t~I~~~T~g~L-lr~l~~~-------~~L~---~~s~IIiDEaH 646 (1176)
.+...+. .....+|+|+|+|.| ++.+... ..++ ++.++||||||
T Consensus 154 i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaD 212 (997)
T 2ipc_A 154 IQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVD 212 (997)
T ss_dssp CCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHH
T ss_pred EeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechH
Confidence 4433211 113578999999999 6666554 2467 89999999999
No 89
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=142.25 Aligned_cols=89 Identities=51% Similarity=0.845 Sum_probs=81.1
Q ss_pred CCCCCCCCEEEEEEEEEeeceeEEEeCCCC-Ceeeeeecccc-cccccCCcccccCCCCEEEEEEEEEeCcEeEEEEeec
Q 001046 218 GNEPELYQVYKGRVSRVVDTGCFVQLNDFR-GKEGLVHVSQI-ATRRIGNAKDVVKRDQEVYVKVISVSGQKLSLSMRDV 295 (1176)
Q Consensus 218 ~~~~~~g~~~~g~V~~i~~~G~fV~l~~~~-~~eGlvhisel-s~~~~~~~~~~~~~Gd~V~VkV~~id~~ki~Ls~k~~ 295 (1176)
..++++|++|.|+|++|++||+||+|.+++ +.+||||+|++ ++.++.++.+.+++||.|+|+|++++.++|+||+|.+
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~i~LSlk~~ 86 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGTKTSLSMKDV 86 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEETTEEEEESTTB
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEECCeeEEEEeec
Confidence 457899999999999999999999998642 68999999999 5668889999999999999999999988999999999
Q ss_pred cccCCCCCChh
Q 001046 296 DQNTGKDLLPL 306 (1176)
Q Consensus 296 dq~tg~d~~P~ 306 (1176)
+|++|++++|.
T Consensus 87 ~~~~~~~~~~~ 97 (103)
T 2eqs_A 87 DQETGEDLNPN 97 (103)
T ss_dssp CTTTCCBCCSS
T ss_pred ccCCchhcCcc
Confidence 99999998884
No 90
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=7.7e-15 Score=142.28 Aligned_cols=91 Identities=37% Similarity=0.623 Sum_probs=82.3
Q ss_pred CCCCCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEeC----cEeEEEE
Q 001046 217 RGNEPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVSG----QKLSLSM 292 (1176)
Q Consensus 217 ~~~~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id~----~ki~Ls~ 292 (1176)
....+++|++|.|+|++|++||+||+|++. +.+||||+|++++.++.++.+.+++||.|+|+|++++. ++|.||+
T Consensus 16 ~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~-~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSl 94 (119)
T 2cqo_A 16 MENLPALYTIFQGEVAMVTDYGAFIKIPGC-RKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSM 94 (119)
T ss_dssp SCCSCCTTCEEEEEEEEEETTEEEEECTTC-SSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEES
T ss_pred hhcccCCCCEEEEEEEEEeCceEEEEECCC-cEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEE
Confidence 556889999999999999999999999642 36999999999999999999999999999999999982 5999999
Q ss_pred eeccccCCCCCChhhh
Q 001046 293 RDVDQNTGKDLLPLKK 308 (1176)
Q Consensus 293 k~~dq~tg~d~~P~~~ 308 (1176)
|.++++++++++|...
T Consensus 95 k~~~~~~~~~~~~~~~ 110 (119)
T 2cqo_A 95 KVVNQGTGKDLDPNNV 110 (119)
T ss_dssp TTBCSSSCCBSCTTCC
T ss_pred eecccCCccccCcccc
Confidence 9999999999998553
No 91
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.55 E-value=3.2e-14 Score=174.06 Aligned_cols=116 Identities=18% Similarity=0.188 Sum_probs=65.4
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEE--EcchhhhccCC
Q 001046 729 EPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVV--ATNIAEASLTI 806 (1176)
Q Consensus 729 ~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlV--ATniae~GIdI 806 (1176)
..+|.+|||+|+....+.+++.|.. .. +..++.. ..+..+++.|+.+. .|++ ||..+..|||+
T Consensus 382 ~~~g~~lvff~S~~~~~~v~~~l~~-----------~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~ 446 (540)
T 2vl7_A 382 NSSKSVLVFFPSYEMLESVRIHLSG-----------IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEF 446 (540)
T ss_dssp TCSSEEEEEESCHHHHHHHHTTCTT-----------SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC----------
T ss_pred hCCCCEEEEeCCHHHHHHHHHHhcc-----------Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceec
Confidence 4678999999999998887765531 22 2335443 34556666776653 5766 89999999999
Q ss_pred CC----eeEEEeCCcccceeccCCC-------------CCccccccccCHHHHHHHhcccCCCC--CcEEEEe
Q 001046 807 DG----IFYVIDPGFAKQNVYNPKQ-------------GLDSLVITPISQASAKQRAGRAGRTG--PGKCYRL 860 (1176)
Q Consensus 807 p~----V~~VId~g~~k~~~yd~~~-------------g~~~l~~~p~S~as~~QR~GRAGR~g--~G~c~~L 860 (1176)
|+ +++||..|+.-...-||.. +... ...|.......|-+||+-|.. .|..+.+
T Consensus 447 ~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Q~~GR~iR~~~D~g~v~ll 518 (540)
T 2vl7_A 447 REKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDS-IIHDLTAIVIKQTIGRAFRDPNDYVKIYLC 518 (540)
T ss_dssp -----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHH-HHHHHHHHHHHHHHHHHCCSTTCCCEEEEE
T ss_pred CCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhH-HHHHHHHHHHHHHhCCcccCCCccEEEEEE
Confidence 98 8999999985444333311 1110 111223677899999999976 5765544
No 92
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.53 E-value=1.8e-14 Score=161.63 Aligned_cols=148 Identities=13% Similarity=0.023 Sum_probs=106.4
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEE
Q 001046 523 LPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGY 602 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy 602 (1176)
+.++++|.++++.+..+...++++|||+|||.++..++........+++++++|+++|+.|+.+++.+. +...+..++.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~-~~~~~~~~~~ 190 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY-RLFSHAMIKK 190 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHH-TSCCGGGEEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh-cccccceEEE
Confidence 568899999999988888899999999999999877766543333458999999999999999988654 3332233332
Q ss_pred Eeeccccc---CCCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhh-CCCccEEEEcCCC
Q 001046 603 AIRFEDCT---GPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKR-RPDLRLIVTSATL 678 (1176)
Q Consensus 603 ~ir~~~~~---~~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~-r~~~kvIlmSATl 678 (1176)
........ .....|+++|++.+.+.. ...+.++++|||||||. ... . .+..++.. .+..++|+||||+
T Consensus 191 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~--~~~~~~~~~vIiDEaH~-~~~-~----~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECHL-ATG-K----SISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHTTSC--GGGGGGEEEEEEETGGG-CCH-H----HHHHHTTTCTTCCEEEEECSSC
T ss_pred EeCCCcchhhhccCCcEEEEchHHHHhhH--HHHHhhCCEEEEECCcc-CCc-c----cHHHHHHHhhcCCeEEEEeCCC
Confidence 22222111 156889999999875542 12578899999999994 322 2 23333333 3588999999999
Q ss_pred C
Q 001046 679 D 679 (1176)
Q Consensus 679 ~ 679 (1176)
.
T Consensus 263 ~ 263 (282)
T 1rif_A 263 R 263 (282)
T ss_dssp C
T ss_pred C
Confidence 4
No 93
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.53 E-value=3.7e-15 Score=154.56 Aligned_cols=96 Identities=23% Similarity=0.346 Sum_probs=74.2
Q ss_pred CCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEe--CcEeEEEEeeccc
Q 001046 220 EPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVS--GQKLSLSMRDVDQ 297 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id--~~ki~Ls~k~~dq 297 (1176)
-|++|++|.|+|++|++||+||+|.+..+.+||||+|+++++++.++++++++||.|+|+|+++| .++|+||+|++.+
T Consensus 12 ~p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~ 91 (182)
T 1kl9_A 12 FPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSP 91 (182)
T ss_dssp SCCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCH
T ss_pred CCCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCc
Confidence 46899999999999999999999964447999999999999999999999999999999999999 5799999999988
Q ss_pred cCCCCCChhhhhhhccCCCCCCCC
Q 001046 298 NTGKDLLPLKKISEDDALGNNPSG 321 (1176)
Q Consensus 298 ~tg~d~~P~~~~~~~~~~~~~~~g 321 (1176)
+ ||....+.++.+..+.|
T Consensus 92 ~------p~~~~~~~~~~g~~v~g 109 (182)
T 1kl9_A 92 E------EAIKCEDKFTKSKTVYS 109 (182)
T ss_dssp H------HHHHHHHHHHHHHHHHH
T ss_pred C------hHHHHHHhccCCCEEEE
Confidence 8 99988777776665544
No 94
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.51 E-value=2.2e-14 Score=131.39 Aligned_cols=77 Identities=25% Similarity=0.308 Sum_probs=71.0
Q ss_pred CCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecc-cccccccCCcccccCCCCEEEEEEEEEe--CcEeEEEEeecc
Q 001046 220 EPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVS-QIATRRIGNAKDVVKRDQEVYVKVISVS--GQKLSLSMRDVD 296 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhis-els~~~~~~~~~~~~~Gd~V~VkV~~id--~~ki~Ls~k~~d 296 (1176)
.+++|++|.|+|+ |++||+||+|.++++.+||+|+| +++++++.++++.+ +||.|+|+|+++| .++|+||+|++.
T Consensus 8 ~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~~~ 85 (88)
T 1luz_A 8 LPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKRMC 85 (88)
T ss_dssp CCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEEEC
T ss_pred CCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEeecC
Confidence 5789999999999 99999999997654789999999 99999999999999 9999999999999 579999999987
Q ss_pred cc
Q 001046 297 QN 298 (1176)
Q Consensus 297 q~ 298 (1176)
++
T Consensus 86 ~~ 87 (88)
T 1luz_A 86 RH 87 (88)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 95
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.49 E-value=1.3e-14 Score=149.77 Aligned_cols=95 Identities=21% Similarity=0.384 Sum_probs=77.0
Q ss_pred CCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEe--CcEeEEEEeecccc
Q 001046 221 PELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVS--GQKLSLSMRDVDQN 298 (1176)
Q Consensus 221 ~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id--~~ki~Ls~k~~dq~ 298 (1176)
|++|++|.|+|++|++||+||+|.++.+.+||||+|++++.++.++.+.+++||.|+|+|+++| .++|+||+|++.++
T Consensus 13 p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~~ 92 (175)
T 2a19_A 13 PEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSE 92 (175)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCcC
Confidence 4699999999999999999999963347899999999999999999999999999999999998 57999999999887
Q ss_pred CCCCCChhhhhhhccCCCCCCCC
Q 001046 299 TGKDLLPLKKISEDDALGNNPSG 321 (1176)
Q Consensus 299 tg~d~~P~~~~~~~~~~~~~~~g 321 (1176)
||......++.+..+.|
T Consensus 93 ------~~~~~~~~~~~g~~v~g 109 (175)
T 2a19_A 93 ------DIIKCEEKYQKSKTVHS 109 (175)
T ss_dssp ------HHHHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHhccCCCcceE
Confidence 99988877777655544
No 96
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.43 E-value=4e-13 Score=146.83 Aligned_cols=138 Identities=15% Similarity=0.089 Sum_probs=103.2
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEE
Q 001046 523 LPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGY 602 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy 602 (1176)
...+++|.+++..+.+++.++++||||+|||+++..++... ++++++++|+++|+.|+.+.+.+ ++.. .++.
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~-~~~~---~v~~ 163 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI-FGEE---YVGE 163 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGG-GCGG---GEEE
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHh-CCCC---eEEE
Confidence 56788999999999999999999999999999988877664 56899999999999999988766 5433 0332
Q ss_pred EeecccccCCCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCCC
Q 001046 603 AIRFEDCTGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLD 679 (1176)
Q Consensus 603 ~ir~~~~~~~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl~ 679 (1176)
... .......|+++|++.+.+.+.. ...++++|||||||.-. .. . ++.+....+..++|+||||+.
T Consensus 164 ~~g---~~~~~~~i~v~T~~~l~~~~~~--~~~~~~llIiDEaH~l~-~~-~----~~~i~~~~~~~~~l~LSATp~ 229 (237)
T 2fz4_A 164 FSG---RIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHHLP-AE-S----YVQIAQMSIAPFRLGLTATFE 229 (237)
T ss_dssp ESS---SCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEECSSCCC-TT-T----HHHHHHTCCCSEEEEEEESCC
T ss_pred EeC---CCCCcCCEEEEeHHHHHhhHHH--hcccCCEEEEECCccCC-Ch-H----HHHHHHhccCCEEEEEecCCC
Confidence 211 1223578999999998766542 23568999999999532 22 1 233444556788999999995
No 97
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.43 E-value=3.5e-13 Score=130.15 Aligned_cols=87 Identities=30% Similarity=0.511 Sum_probs=77.8
Q ss_pred CCCCCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeeccccccc-ccCCcccccCCCCEEEEEEEEEe--CcEeEEEEe
Q 001046 217 RGNEPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATR-RIGNAKDVVKRDQEVYVKVISVS--GQKLSLSMR 293 (1176)
Q Consensus 217 ~~~~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~-~~~~~~~~~~~Gd~V~VkV~~id--~~ki~Ls~k 293 (1176)
...++++|++|.|+|++|++||+||+|++ +.+||||+|+++++ +..++.+.+++||.|+|+|++++ .++|.||+|
T Consensus 24 ~~~~~~~G~~~~G~V~~v~~~G~FV~l~~--~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~rI~lslk 101 (115)
T 2khi_A 24 IAKRYPEGTKLTGRVTNLTDYGCFVEIEE--GVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 101 (115)
T ss_dssp SSCSSCSSCEEEEEEEEEETTEEEEECST--TCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTEEEECCC
T ss_pred HhhcCCCCCEEEEEEEEEECCEEEEEECC--CCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCEEEEEEE
Confidence 34579999999999999999999999976 78999999999984 78889999999999999999999 479999999
Q ss_pred eccccCCCCCChhhhhhh
Q 001046 294 DVDQNTGKDLLPLKKISE 311 (1176)
Q Consensus 294 ~~dq~tg~d~~P~~~~~~ 311 (1176)
.+.++ ||..+.+
T Consensus 102 ~~~~~------p~~~~~~ 113 (115)
T 2khi_A 102 QCKAN------PWQQFAE 113 (115)
T ss_dssp CCCSS------CCCCCCC
T ss_pred ecCcC------HHHHHHh
Confidence 99877 9876543
No 98
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.39 E-value=6.5e-13 Score=130.92 Aligned_cols=78 Identities=32% Similarity=0.527 Sum_probs=73.5
Q ss_pred CCCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEe--CcEeEEEEeecc
Q 001046 219 NEPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVS--GQKLSLSMRDVD 296 (1176)
Q Consensus 219 ~~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id--~~ki~Ls~k~~d 296 (1176)
.++++|++|.|+|++|++||+||+|.+ +.+||||+|++++.++.++.+.+++||.|.|+|++++ .++|+||++.+.
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~--~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~~ 80 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDE--ETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQ 80 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEET--TEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHHH
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECC--CcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeecc
Confidence 468899999999999999999999976 7999999999999999999999999999999999999 579999999987
Q ss_pred cc
Q 001046 297 QN 298 (1176)
Q Consensus 297 q~ 298 (1176)
++
T Consensus 81 ~~ 82 (130)
T 2k4k_A 81 AA 82 (130)
T ss_dssp HS
T ss_pred cC
Confidence 77
No 99
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.35 E-value=5.9e-11 Score=145.59 Aligned_cols=313 Identities=16% Similarity=0.126 Sum_probs=185.3
Q ss_pred CchHHHHHHHHH----HHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCe
Q 001046 524 PIYKLKKELIQA----VHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEE 599 (1176)
Q Consensus 524 Pi~~~q~~ii~a----i~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~ 599 (1176)
..+++|.+++++ +..++++++.+|||+|||.++..+++.. +.+++|+.||++++.|+.+.+. .+....+..
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~----~~~v~i~~pt~~l~~q~~~~~~-~l~~~~~~~ 77 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV----KPKVLFVVRTHNEFYPIYRDLT-KIREKRNIT 77 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH----CSEEEEEESSGGGHHHHHHHHT-TCCCSSCCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC----CCeEEEEcCCHHHHHHHHHHHH-HHhhhcCcc
Confidence 457788887764 5679999999999999999998888873 5689999999999999986553 232222222
Q ss_pred eEEEeeccc-c--------------------------------------------------------cCCCceEEEeChH
Q 001046 600 VGYAIRFED-C--------------------------------------------------------TGPDTVIKYMTDG 622 (1176)
Q Consensus 600 vGy~ir~~~-~--------------------------------------------------------~~~~t~I~~~T~g 622 (1176)
+........ | .....+|+++|++
T Consensus 78 ~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~ 157 (551)
T 3crv_A 78 FSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYP 157 (551)
T ss_dssp EEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETH
T ss_pred EEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCch
Confidence 211000000 0 0125689999999
Q ss_pred HHHHHHhhCC--CCCCCceEEEcCCCcCC-Cc------------------------------------------------
Q 001046 623 MLLREILIDD--NLSQYSVIMLDEAHERT-IH------------------------------------------------ 651 (1176)
Q Consensus 623 ~Llr~l~~~~--~L~~~s~IIiDEaHeR~-~~------------------------------------------------ 651 (1176)
.|+....... ......+|||||||.-. ..
T Consensus 158 ~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ 237 (551)
T 3crv_A 158 YFFIDRYREFIDIDLREYMIVIDEAHNLDKVNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYIKV 237 (551)
T ss_dssp HHHCHHHHTTSCCCSTTEEEEETTGGGGGGGGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCEEC
T ss_pred HhcCHHHHHhcCCCcCCeEEEEecccchHHHHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 9998765543 23577899999999300 00
Q ss_pred -------hhHHHHHH----------------------------HHHHh------------------------hCCC--cc
Q 001046 652 -------TDVLFGLL----------------------------KQLVK------------------------RRPD--LR 670 (1176)
Q Consensus 652 -------~d~ll~ll----------------------------k~~~~------------------------~r~~--~k 670 (1176)
.+.+..+. ..+.. .... ..
T Consensus 238 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~~s 317 (551)
T 3crv_A 238 ENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNELS 317 (551)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTTCE
T ss_pred ccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccCce
Confidence 00000000 00000 0012 58
Q ss_pred EEEEcCCCCH-HHHHhhhcCC-CeE------ecCCcee--eeEEEEecC-C------CchhHHHHHHHHHHHHhcCCCCC
Q 001046 671 LIVTSATLDA-EKFSGYFFNC-NIF------TIPGRTF--PVEILYTKQ-P------ESDYLDASLITVLQIHLTEPEGD 733 (1176)
Q Consensus 671 vIlmSATl~~-~~~~~~f~~~-~v~------~i~gr~~--pv~~~~~~~-~------~~~~~~~~l~~v~~i~~~~~~g~ 733 (1176)
+|+||||+.+ +.|...++-. +.. .++ ..| ...++.... + ...+.......+..+. ...+|.
T Consensus 318 vIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~-spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~-~~~~g~ 395 (551)
T 3crv_A 318 IILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQ-KRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIY-FQAKAN 395 (551)
T ss_dssp EEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTT-SCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHH-HHCSSE
T ss_pred EEEEeeCCCcHHHHHHHhCCCCccccccceeecC-CcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHH-HhCCCC
Confidence 9999999964 4455555432 221 111 111 111222111 1 1233444444444443 335789
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEc--chhhhccCCC---C
Q 001046 734 ILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVAT--NIAEASLTID---G 808 (1176)
Q Consensus 734 iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVAT--niae~GIdIp---~ 808 (1176)
+|||+|+....+.+++. .+..++.-..+++..+....|. ..+ .-|++|| ..+..|||+| +
T Consensus 396 ~lvlF~Sy~~l~~v~~~------------~~~~v~~q~~~~~~~~~~~~~~--~~~-~~vl~~v~gg~~~EGiD~~d~~g 460 (551)
T 3crv_A 396 VLVVFPSYEIMDRVMSR------------ISLPKYVESEDSSVEDLYSAIS--ANN-KVLIGSVGKGKLAEGIELRNNDR 460 (551)
T ss_dssp EEEEESCHHHHHHHHTT------------CCSSEEECCSSCCHHHHHHHTT--SSS-SCEEEEESSCCSCCSSCCEETTE
T ss_pred EEEEecCHHHHHHHHHh------------cCCcEEEcCCCCCHHHHHHHHH--hcC-CeEEEEEecceecccccccccCC
Confidence 99999999988777641 1233443334566666655554 223 4799998 6899999999 4
Q ss_pred --eeEEEeCCcccceeccC-----------CCCCccc---cccccCHHHHHHHhcccCCCC--CcEEEEe
Q 001046 809 --IFYVIDPGFAKQNVYNP-----------KQGLDSL---VITPISQASAKQRAGRAGRTG--PGKCYRL 860 (1176)
Q Consensus 809 --V~~VId~g~~k~~~yd~-----------~~g~~~l---~~~p~S~as~~QR~GRAGR~g--~G~c~~L 860 (1176)
.+.||=.|+.-... || ..|.+.. ...| -.....|-+||+=|.. -|..+.|
T Consensus 461 ~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 528 (551)
T 3crv_A 461 SLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKCNVWLL 528 (551)
T ss_dssp ESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEEEEEEE
T ss_pred cceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccEEEEEe
Confidence 78888777654443 43 2232121 2335 5667889999999987 4655543
No 100
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.33 E-value=4.3e-12 Score=114.31 Aligned_cols=72 Identities=24% Similarity=0.471 Sum_probs=65.3
Q ss_pred CCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEe--CcEeEEEEeeccc
Q 001046 220 EPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVS--GQKLSLSMRDVDQ 297 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id--~~ki~Ls~k~~dq 297 (1176)
++++|++|.|+|+++++||+||+|++ +.+||+|+|++++.++ +.+++||.|+|+|++++ .++|+||++.+.+
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~--~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~~ 75 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNE--QVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIPLEH 75 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEET--TEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECSCC-
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECC--CCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEeeccc
Confidence 47899999999999999999999986 7899999999998766 78999999999999999 3799999998754
No 101
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.33 E-value=3.2e-12 Score=122.20 Aligned_cols=79 Identities=29% Similarity=0.380 Sum_probs=73.0
Q ss_pred CCCCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEe--CcEeEEEEeec
Q 001046 218 GNEPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVS--GQKLSLSMRDV 295 (1176)
Q Consensus 218 ~~~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id--~~ki~Ls~k~~ 295 (1176)
..++++|++|.|+|++|++||+||+|++ +.+||+|+|++++.++.++.+.+++||.|.|+|++++ +++|.||++.+
T Consensus 26 ~~~~~~G~iv~G~V~~v~~~G~fV~l~~--~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~~~~ki~LS~k~~ 103 (109)
T 2khj_A 26 VALNKKGAIVTGKVTAVDAKGATVELAD--GVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 103 (109)
T ss_dssp TTTCCSSSEEEEEEEEECSSCEEEECST--TCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTTEEEEETTSS
T ss_pred hhcCCCCCEEEEEEEEEECCeEEEEECC--CCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 3578999999999999999999999986 7899999999999999999999999999999999999 45999999998
Q ss_pred ccc
Q 001046 296 DQN 298 (1176)
Q Consensus 296 dq~ 298 (1176)
+++
T Consensus 104 ~~~ 106 (109)
T 2khj_A 104 DEA 106 (109)
T ss_dssp SSC
T ss_pred Chh
Confidence 654
No 102
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.32 E-value=8.5e-13 Score=147.42 Aligned_cols=97 Identities=25% Similarity=0.383 Sum_probs=85.6
Q ss_pred CCCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEe--CcEeEEEEeecc
Q 001046 219 NEPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVS--GQKLSLSMRDVD 296 (1176)
Q Consensus 219 ~~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id--~~ki~Ls~k~~d 296 (1176)
..|++|++|.|+|++|++||+||+|.++.+.+||||+|++++.++.++.+.+++||.|.|+|+++| .++|+||+|.+.
T Consensus 9 ~~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~ 88 (308)
T 1q8k_A 9 KFPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVS 88 (308)
T ss_dssp CCCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCC
T ss_pred cCCCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEecc
Confidence 457899999999999999999999974447899999999999999999999999999999999999 579999999998
Q ss_pred ccCCCCCChhhhhhhccCCCCCCCC
Q 001046 297 QNTGKDLLPLKKISEDDALGNNPSG 321 (1176)
Q Consensus 297 q~tg~d~~P~~~~~~~~~~~~~~~g 321 (1176)
++ ||......++.+..+.|
T Consensus 89 ~~------p~~~~~~~~~~G~~v~G 107 (308)
T 1q8k_A 89 PE------EAIKCEDKFTKSKTVYS 107 (308)
T ss_dssp HH------HHHHHHHHHHHHHHHHH
T ss_pred cC------hHHHHHHHccCCCeeEE
Confidence 77 99987777766554444
No 103
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.29 E-value=1.7e-12 Score=143.17 Aligned_cols=95 Identities=29% Similarity=0.468 Sum_probs=83.6
Q ss_pred CCCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEe--CcEeEEEEeecc
Q 001046 219 NEPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVS--GQKLSLSMRDVD 296 (1176)
Q Consensus 219 ~~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id--~~ki~Ls~k~~d 296 (1176)
..|++|++|.|+|++|++||+||+|.++.+.+||||+|+++++++.++.+.+++||.|.|+|+++| .++|+||++.+.
T Consensus 7 ~~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~ 86 (275)
T 3aev_A 7 EYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVT 86 (275)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCC
T ss_pred cCCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeecC
Confidence 356799999999999999999999985457899999999999999999999999999999999999 579999999998
Q ss_pred ccCCCCCChhhhhhhccCCCCCC
Q 001046 297 QNTGKDLLPLKKISEDDALGNNP 319 (1176)
Q Consensus 297 q~tg~d~~P~~~~~~~~~~~~~~ 319 (1176)
++ ||......++.+...
T Consensus 87 ~~------~~~~~~~~~~~g~~v 103 (275)
T 3aev_A 87 QQ------QRKAKLQEFKRAQKA 103 (275)
T ss_dssp HH------HHHHHHHHHHHHHHH
T ss_pred cc------hhHHHHHhccCCCeE
Confidence 77 998766666554433
No 104
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.21 E-value=8.8e-12 Score=138.85 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=86.9
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCC-Cce-EEEEcchhhhccCCC
Q 001046 730 PEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPG-KRK-VVVATNIAEASLTID 807 (1176)
Q Consensus 730 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g-~~k-VlVATniae~GIdIp 807 (1176)
.+.++|||+.....++.+...|.+.. ++.+..+||+++..+|..+++.|..+ ..+ +|+||+++++|||++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~--------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~ 182 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 182 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH--------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCT
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcc
Confidence 56799999999999999888887642 34567899999999999999999887 666 789999999999999
Q ss_pred CeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC---CcEEEEecChHHHh
Q 001046 808 GIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG---PGKCYRLYTESAYR 867 (1176)
Q Consensus 808 ~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g---~G~c~~L~t~~~~~ 867 (1176)
++++||+++. |.+.+.+.||+||++|.| +-.+|+|+++...+
T Consensus 183 ~a~~VI~~d~------------------~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiE 227 (271)
T 1z5z_A 183 SANRVIHFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE 227 (271)
T ss_dssp TCSEEEECSC------------------CSCTTTC--------------CCEEEEEEETTSHH
T ss_pred cCCEEEEECC------------------CCChhHHHHHHHhccccCCCCceEEEEEeeCCCHH
Confidence 9999999998 889999999999999999 45679999876554
No 105
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.19 E-value=8.1e-12 Score=137.60 Aligned_cols=92 Identities=24% Similarity=0.419 Sum_probs=82.1
Q ss_pred CCCCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEe--CcEeEEEEeec
Q 001046 218 GNEPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVS--GQKLSLSMRDV 295 (1176)
Q Consensus 218 ~~~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id--~~ki~Ls~k~~ 295 (1176)
...|++|++|.|+|++|++||+||+|.++.+.+||||+|+++++++.++.+.+++||.|.|+|++++ .++|+||+|.+
T Consensus 6 ~~~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~ 85 (266)
T 3cw2_C 6 SKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKV 85 (266)
T ss_dssp SSSCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTTS
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEec
Confidence 3468899999999999999999999974447899999999999999999999999999999999998 57999999999
Q ss_pred cccCCCCCChhhhhhhccCC
Q 001046 296 DQNTGKDLLPLKKISEDDAL 315 (1176)
Q Consensus 296 dq~tg~d~~P~~~~~~~~~~ 315 (1176)
.++ ||......+..
T Consensus 86 ~~~------~~~~~~~~~~~ 99 (266)
T 3cw2_C 86 TDD------ERRKKNLQWKK 99 (266)
T ss_dssp CTT------HHHHHHHHHHH
T ss_pred chh------hHHHHHHhccc
Confidence 876 99876665554
No 106
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.17 E-value=2.7e-12 Score=157.71 Aligned_cols=86 Identities=45% Similarity=0.684 Sum_probs=0.0
Q ss_pred CCCCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEe-CcEeEEEEeecc
Q 001046 218 GNEPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVS-GQKLSLSMRDVD 296 (1176)
Q Consensus 218 ~~~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id-~~ki~Ls~k~~d 296 (1176)
-.++++|++|.|+|++|++||+||+|.+ +.+||||+|+++++++.++++++++||.|+|||+++| .+||+||+|.++
T Consensus 632 ~~~~~vG~v~~G~V~~I~~fGaFVel~~--g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~~grI~LS~K~~~ 709 (726)
T 4aid_A 632 TDEAEVGKIYDGKVVKVVDFGAFVNFFG--AKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDDRGKTKLSMKVVD 709 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcCCcEEEEEEEEEeccEEEEEECC--CcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECCCCcEEEEEeecc
Confidence 3589999999999999999999999976 7899999999999999999999999999999999999 689999999999
Q ss_pred ccCCCCCCh
Q 001046 297 QNTGKDLLP 305 (1176)
Q Consensus 297 q~tg~d~~P 305 (1176)
+++|+++..
T Consensus 710 ~~~G~~~~~ 718 (726)
T 4aid_A 710 QETGEDLSK 718 (726)
T ss_dssp ---------
T ss_pred cCcchhhhh
Confidence 998888744
No 107
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.14 E-value=4.1e-12 Score=157.04 Aligned_cols=89 Identities=39% Similarity=0.639 Sum_probs=0.0
Q ss_pred CCCCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEe-CcEeEEEEeecc
Q 001046 218 GNEPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVS-GQKLSLSMRDVD 296 (1176)
Q Consensus 218 ~~~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id-~~ki~Ls~k~~d 296 (1176)
..++++|++|.|+|++|++||+||+|.+ +.+||||+|+++++++.++++++++||.|+|||+++| .++|+||+|.+.
T Consensus 622 ~~~~~vG~i~~G~V~~i~~fGaFVel~~--g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~~grI~LS~k~~~ 699 (723)
T 3cdi_A 622 TAEIEVGRVYTGKVTRIVDFGAFVAIGG--GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEAT 699 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhcCcEEEEEEEEEecceEEEEeCC--CceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECCCCcEEEEEEecc
Confidence 3578999999999999999999999975 7899999999999999999999999999999999999 689999999999
Q ss_pred ccCCCCCChhhh
Q 001046 297 QNTGKDLLPLKK 308 (1176)
Q Consensus 297 q~tg~d~~P~~~ 308 (1176)
+++|+|++|...
T Consensus 700 ~~~g~~~~p~~~ 711 (723)
T 3cdi_A 700 EQSQPAAAPEAP 711 (723)
T ss_dssp ------------
T ss_pred CCCCcccCcccc
Confidence 999999999764
No 108
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.99 E-value=2.6e-11 Score=150.46 Aligned_cols=87 Identities=33% Similarity=0.476 Sum_probs=36.9
Q ss_pred CCCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccc----cccccCCcccccCCCCEEEEEEEEEe-CcEeEEEEe
Q 001046 219 NEPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQI----ATRRIGNAKDVVKRDQEVYVKVISVS-GQKLSLSMR 293 (1176)
Q Consensus 219 ~~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisel----s~~~~~~~~~~~~~Gd~V~VkV~~id-~~ki~Ls~k 293 (1176)
.++++|++|.|+|++|++||+||+|.+ +.+||||+|++ +++++.++++++++||.|+|+|+++| .+||+||+|
T Consensus 663 ~~~~vG~i~~G~V~~i~~fGaFV~l~~--g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~~grI~LS~k 740 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTFGAFVSLLP--GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSLIPV 740 (757)
T ss_dssp ----------CBEEECC-CSCEECCC-----CCCCC-------------------CCSSCBCCCCCCCCCSSCC------
T ss_pred hhcccccEEEEEEEEccccEEEEEEcC--CcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECCCCCEEEEEe
Confidence 578999999999999999999999975 78999999999 99999999999999999999999999 689999999
Q ss_pred eccccCCCCCChhhhhhhcc
Q 001046 294 DVDQNTGKDLLPLKKISEDD 313 (1176)
Q Consensus 294 ~~dq~tg~d~~P~~~~~~~~ 313 (1176)
.+.++ ||......+
T Consensus 741 ~~~~~------pw~~~~~~~ 754 (757)
T 1e3p_A 741 IEGEE------AASDEKKDD 754 (757)
T ss_dssp --------------------
T ss_pred cCCCC------chhhhhhcc
Confidence 99887 998654443
No 109
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.95 E-value=6.7e-09 Score=128.70 Aligned_cols=174 Identities=18% Similarity=0.225 Sum_probs=92.6
Q ss_pred cEEEEcCCCC-HHHHHhhhcCC-CeEecCCceee---eEEEEecCC-------CchhHHHHHHHHHHHHhcCCCCCEEEE
Q 001046 670 RLIVTSATLD-AEKFSGYFFNC-NIFTIPGRTFP---VEILYTKQP-------ESDYLDASLITVLQIHLTEPEGDILLF 737 (1176)
Q Consensus 670 kvIlmSATl~-~~~~~~~f~~~-~v~~i~gr~~p---v~~~~~~~~-------~~~~~~~~l~~v~~i~~~~~~g~iLVF 737 (1176)
.+|++|||+. .+.|...++-. ..+.++. .|+ ..+++.... ...+.......+..+... .+|.+|||
T Consensus 377 ~~il~SaTL~p~~~~~~~lGl~~~~~~~~s-pf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~-~~g~~lvl 454 (620)
T 4a15_A 377 KTIHMSGTLDPFDFYSDITGFEIPFKKIGE-IFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK-VKKNTIVY 454 (620)
T ss_dssp EEEEEESSCCSHHHHHHHHCCCCCEEECCC-CSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHH-HCSCEEEE
T ss_pred eEEEEccCCCcHHHHHHHhCCCceeeecCC-CCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh-CCCCEEEE
Confidence 4589999995 45555555432 1122221 111 122222211 122333333344444332 46789999
Q ss_pred eCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcc--hhhhccCCCC--eeEEE
Q 001046 738 LTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATN--IAEASLTIDG--IFYVI 813 (1176)
Q Consensus 738 l~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATn--iae~GIdIp~--V~~VI 813 (1176)
+|+....+.+++.|. . + ... ...+++...+..+++.|. +.--|++||. .+..|||+|+ .+.||
T Consensus 455 F~Sy~~l~~v~~~l~-~---~-----~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~vi 521 (620)
T 4a15_A 455 FPSYSLMDRVENRVS-F---E-----HMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMII 521 (620)
T ss_dssp ESCHHHHHHHTSSCC-S---C-----CEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEE
T ss_pred eCCHHHHHHHHHHHH-h---c-----chh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEE
Confidence 999998877766553 1 1 111 444555567888888888 8889999974 8999999998 66777
Q ss_pred eCCcccceeccCC-------------CCCccccccccCHHHHHHHhcccCCCC--CcEEEEe
Q 001046 814 DPGFAKQNVYNPK-------------QGLDSLVITPISQASAKQRAGRAGRTG--PGKCYRL 860 (1176)
Q Consensus 814 d~g~~k~~~yd~~-------------~g~~~l~~~p~S~as~~QR~GRAGR~g--~G~c~~L 860 (1176)
-.|+.-... ||. .+...-...| ..-...|-+||+=|.. .|..+.+
T Consensus 522 I~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 522 LAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp ESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred EEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceEEEEEE
Confidence 777642221 211 1111001223 3556789999999977 5766554
No 110
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.90 E-value=1.8e-09 Score=139.58 Aligned_cols=80 Identities=18% Similarity=0.116 Sum_probs=73.3
Q ss_pred CCCCCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccc-cCCcccccCCCCEEEEEEEEEe--CcEeEEEEe
Q 001046 217 RGNEPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRR-IGNAKDVVKRDQEVYVKVISVS--GQKLSLSMR 293 (1176)
Q Consensus 217 ~~~~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~-~~~~~~~~~~Gd~V~VkV~~id--~~ki~Ls~k 293 (1176)
..+++++|++|.|+|++|++||+||+|+. |.+||||+|++++.+ +.++.++|++||.|+|+|+++| .++|+||||
T Consensus 896 t~~~l~~G~iv~G~V~~V~~fGaFV~L~~--gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk 973 (1219)
T 3psi_A 896 SEKTFFKGSIIPVRVERFWHNDIICTTNS--EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLL 973 (1219)
T ss_dssp CTTTSCTTCEEEEEEEEECSSCEEEECTT--SCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECC
T ss_pred cHhhCCCCCEEEEEEEEEecceEEEEeCC--CceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEec
Confidence 34689999999999999999999999975 889999999999998 7899999999999999999999 679999999
Q ss_pred ecccc
Q 001046 294 DVDQN 298 (1176)
Q Consensus 294 ~~dq~ 298 (1176)
..+..
T Consensus 974 ~~dl~ 978 (1219)
T 3psi_A 974 DHDVK 978 (1219)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 86544
No 111
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.90 E-value=1.7e-09 Score=104.93 Aligned_cols=76 Identities=22% Similarity=0.226 Sum_probs=61.6
Q ss_pred CCCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccc-cccccCCcccccCCCCEEEEEEEEEe--CcEeEEEEeec
Q 001046 219 NEPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQI-ATRRIGNAKDVVKRDQEVYVKVISVS--GQKLSLSMRDV 295 (1176)
Q Consensus 219 ~~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisel-s~~~~~~~~~~~~~Gd~V~VkV~~id--~~ki~Ls~k~~ 295 (1176)
.++++|++|.|+|++|++||+||+|.. .+.+|++|.++. ++.++.++.+.+++||.|+|+|++++ +++|.||+++.
T Consensus 17 ~~l~~G~i~~G~V~~v~~fG~fV~l~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk~~ 95 (119)
T 1wi5_A 17 EALKPGMLLTGTVSSLEDHGYLVDIGV-DGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHS 95 (119)
T ss_dssp TTCCTTCEEEEEEEEECSSEEEEECCC-SSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECCCC
T ss_pred hcCCCCCEEEEEEEEEeCceEEEEECC-CCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEEEchh
Confidence 478999999999999999999999972 244555554443 23455688999999999999999998 47999999874
No 112
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.89 E-value=3e-09 Score=111.00 Aligned_cols=73 Identities=36% Similarity=0.610 Sum_probs=65.1
Q ss_pred CCCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeeccccccccc-----------CCcccccCCCCEEEEEEEEEeC--
Q 001046 219 NEPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRI-----------GNAKDVVKRDQEVYVKVISVSG-- 285 (1176)
Q Consensus 219 ~~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~-----------~~~~~~~~~Gd~V~VkV~~id~-- 285 (1176)
-.|.+|+++.|+|+++++||+||++. ..+||+|+|++.++++ +++.+.+++||.|+|||++++.
T Consensus 77 ~~p~~Gev~~G~V~~v~~~G~fv~l~---~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~ 153 (180)
T 4ayb_E 77 YVPVVQEVVEGEVLQVDNYGVFVNLG---PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTV 153 (180)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECS---SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC--
T ss_pred eeccCCCEEEEEEeeeccceEEEEEC---CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCC
Confidence 36899999999999999999999995 3699999999998876 4788899999999999999972
Q ss_pred ----cEeEEEEee
Q 001046 286 ----QKLSLSMRD 294 (1176)
Q Consensus 286 ----~ki~Ls~k~ 294 (1176)
.+|+||||+
T Consensus 154 ~~~~~rI~ls~k~ 166 (180)
T 4ayb_E 154 TGRLPRIALTMRQ 166 (180)
T ss_dssp -----CEEEECCS
T ss_pred CcccCcEEEEcCC
Confidence 389999997
No 113
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.89 E-value=3.5e-09 Score=111.20 Aligned_cols=73 Identities=34% Similarity=0.598 Sum_probs=65.8
Q ss_pred CCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccC-----------CcccccCCCCEEEEEEEEEeC---
Q 001046 220 EPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIG-----------NAKDVVKRDQEVYVKVISVSG--- 285 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~-----------~~~~~~~~Gd~V~VkV~~id~--- 285 (1176)
.|.+|++|.|+|+++++||+||+|. ..+||+|+|+++++++. ++.+.+++||.|+|+|++++.
T Consensus 78 ~~~~Gev~~G~V~~v~~~G~fV~l~---~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 154 (187)
T 1go3_E 78 IPEMYELIEGEVVDVVEFGSFVRLG---PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAE 154 (187)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECS---SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC-
T ss_pred ccCCCCEEEEEEEEEeCcEEEEEEc---CccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccC
Confidence 6889999999999999999999995 37999999999988765 788999999999999999983
Q ss_pred ----cEeEEEEeec
Q 001046 286 ----QKLSLSMRDV 295 (1176)
Q Consensus 286 ----~ki~Ls~k~~ 295 (1176)
.+|.||+++.
T Consensus 155 ~p~~~~I~lS~k~~ 168 (187)
T 1go3_E 155 RKRGSKIALTMRQP 168 (187)
T ss_dssp ----CEEEEECCST
T ss_pred CCCccEEEEEEcCC
Confidence 3899999874
No 114
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.84 E-value=1.1e-09 Score=136.11 Aligned_cols=76 Identities=33% Similarity=0.501 Sum_probs=70.6
Q ss_pred CCCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEe--CcEeEEEEeecc
Q 001046 219 NEPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVS--GQKLSLSMRDVD 296 (1176)
Q Consensus 219 ~~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id--~~ki~Ls~k~~d 296 (1176)
+++++|++|.|+|++|++||+||+|+. +.+||||+|++++.++.++.++|++||.|+|+|+++| .++|+||||..+
T Consensus 650 ~~l~vG~iv~G~V~~V~~fGaFV~l~~--~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~~~ 727 (785)
T 3bzc_A 650 KDLKPGMVLEGVVTNVTNFGAFVDIGV--HQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMSD 727 (785)
T ss_dssp TTCCTTCBCCCEEEEEETTEEEEECSS--SSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSSCC
T ss_pred hhcCCCCEEEEEEEEEecCCeEEEeCC--CcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEecCC
Confidence 468999999999999999999999965 6899999999999999999999999999999999999 579999999654
No 115
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.81 E-value=7.5e-09 Score=109.94 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=68.1
Q ss_pred CCCCCCEEEEEEEEEeeceeEEEeCCC------CCeeeeeecccccccccC--CcccccCCCCEEEEEEEEEeC--cEeE
Q 001046 220 EPELYQVYKGRVSRVVDTGCFVQLNDF------RGKEGLVHVSQIATRRIG--NAKDVVKRDQEVYVKVISVSG--QKLS 289 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~~~G~fV~l~~~------~~~eGlvhisels~~~~~--~~~~~~~~Gd~V~VkV~~id~--~ki~ 289 (1176)
.|++|+++.|+|++|++||+||+|.+. .+.+|+||+|++++.+.. ++.+.|++||.|+|+|++++. +++.
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEE
Confidence 689999999999999999999998532 246999999999998888 899999999999999999984 4799
Q ss_pred EEEeec
Q 001046 290 LSMRDV 295 (1176)
Q Consensus 290 Ls~k~~ 295 (1176)
||+|+.
T Consensus 158 LS~k~~ 163 (209)
T 2nn6_I 158 LTTAEN 163 (209)
T ss_dssp EECCSS
T ss_pred EEEecC
Confidence 999975
No 116
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.75 E-value=1.1e-08 Score=106.37 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=65.9
Q ss_pred CCCCCCEEEEEEEEEeeceeEEEeCCC--------CCeeeeeecccccccccCCcccccCCCCEEEEEEEEEeCcEeEEE
Q 001046 220 EPELYQVYKGRVSRVVDTGCFVQLNDF--------RGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVSGQKLSLS 291 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~~~G~fV~l~~~--------~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id~~ki~Ls 291 (1176)
.|+ |+++.|+|++|.+||+||+|... .+.+|++|+|++++.++.++.+.|++||.|.|+|++ +++.||
T Consensus 55 ~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~---~~i~LS 130 (179)
T 3m7n_A 55 IVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG---DNLRLS 130 (179)
T ss_dssp CCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE---TTTEEE
T ss_pred cCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC---CeEEEE
Confidence 578 99999999999999999999641 146999999999999999999999999999999998 889999
Q ss_pred Eeec
Q 001046 292 MRDV 295 (1176)
Q Consensus 292 ~k~~ 295 (1176)
+|+.
T Consensus 131 ~k~~ 134 (179)
T 3m7n_A 131 TKEE 134 (179)
T ss_dssp CCST
T ss_pred EecC
Confidence 9874
No 117
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.75 E-value=9.6e-10 Score=140.02 Aligned_cols=79 Identities=18% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCCCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccc-cCCcccccCCCCEEEEEEEEEe--CcEeEEEEee
Q 001046 218 GNEPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRR-IGNAKDVVKRDQEVYVKVISVS--GQKLSLSMRD 294 (1176)
Q Consensus 218 ~~~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~-~~~~~~~~~~Gd~V~VkV~~id--~~ki~Ls~k~ 294 (1176)
.+++++|++|.|+|++|++||+||+|+. |.+||||+|++++.+ +.++.++|++||.|+|+|++|| .++|+||||.
T Consensus 900 ~~~l~~G~iv~G~V~~V~~fGaFV~L~~--gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 977 (1030)
T 3psf_A 900 EKTFFKGSIIPVRVERFWHNDIICTTNS--EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 977 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCEEEEEEEEEccCeEEEEeCC--CcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEech
Confidence 3678999999999999999999999975 789999999999998 7899999999999999999998 6799999998
Q ss_pred cccc
Q 001046 295 VDQN 298 (1176)
Q Consensus 295 ~dq~ 298 (1176)
.+-.
T Consensus 978 ~dl~ 981 (1030)
T 3psf_A 978 HDVK 981 (1030)
T ss_dssp ----
T ss_pred HHhc
Confidence 6543
No 118
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=98.72 E-value=2.7e-08 Score=110.55 Aligned_cols=71 Identities=21% Similarity=0.229 Sum_probs=63.9
Q ss_pred CCCCCCCCEEEEEEEEEeeceeEE-EeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEe--CcEeEEEEee
Q 001046 218 GNEPELYQVYKGRVSRVVDTGCFV-QLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVS--GQKLSLSMRD 294 (1176)
Q Consensus 218 ~~~~~~g~~~~g~V~~i~~~G~fV-~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id--~~ki~Ls~k~ 294 (1176)
...++.|++++|+|+++++||+|| .+++ +++||||+||++ +.+++||.|+|+|++++ ++||+||+|.
T Consensus 147 ~~~~~~G~~V~g~V~~i~~~G~fV~~i~~--g~~Glih~SEl~--------~~l~~Gd~v~~~V~~id~~d~kI~LSlk~ 216 (285)
T 3go5_A 147 AYNNMQNQNWPAIVYRLKLSGTFVYLPEN--NMLGFIHPSERY--------AEPRLGQVLDARVIGFREVDRTLNLSLKP 216 (285)
T ss_dssp CCSCCTTCEEEEEEEEEETTEEEEEETTT--TEEEEECGGGCS--------SCCCTTCEEEEEEEEEETTTTEEEEECSC
T ss_pred hhhCCCCCEEEEEEEEEeCCcEEEEEeCC--CeEEEEEHHHcc--------ccCCCCCEEEEEEEEEECCCCeEEEEeCh
Confidence 357889999999999999999999 9976 899999999996 35899999999999999 5799999999
Q ss_pred cccc
Q 001046 295 VDQN 298 (1176)
Q Consensus 295 ~dq~ 298 (1176)
...+
T Consensus 217 ~~~~ 220 (285)
T 3go5_A 217 RSFE 220 (285)
T ss_dssp CCCC
T ss_pred hhhh
Confidence 8654
No 119
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.69 E-value=3.6e-08 Score=101.83 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=57.7
Q ss_pred CCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccCCc----------ccccCCCCEEEEEEEEEe--C--
Q 001046 220 EPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNA----------KDVVKRDQEVYVKVISVS--G-- 285 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~~~----------~~~~~~Gd~V~VkV~~id--~-- 285 (1176)
.|.+|++|.|+|++|++||+||++.. .+||||+|++++.+.-++ .+++++||.|+|+|++++ .
T Consensus 80 ~~~~Gev~~G~V~~v~~fG~FV~l~~---~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~ 156 (171)
T 1y14_B 80 KPFKGEVVDGTVVSCSQHGFEVQVGP---MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSS 156 (171)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETT---EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETTE
T ss_pred cCCCCCEEEEEEEEEecCEEEEEecC---eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCCC
Confidence 57799999999999999999999962 799999999975422111 277999999999999998 2
Q ss_pred -cEeEEEEee
Q 001046 286 -QKLSLSMRD 294 (1176)
Q Consensus 286 -~ki~Ls~k~ 294 (1176)
.++. ||++
T Consensus 157 ~~~ig-sm~~ 165 (171)
T 1y14_B 157 IHAIG-SIKE 165 (171)
T ss_dssp EEEEE-ECCS
T ss_pred cEEEE-EcCC
Confidence 3566 7754
No 120
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.68 E-value=3.2e-08 Score=105.24 Aligned_cols=72 Identities=21% Similarity=0.214 Sum_probs=59.6
Q ss_pred CCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccCCc----------ccccCCCCEEEEEEEEEe--C--
Q 001046 220 EPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNA----------KDVVKRDQEVYVKVISVS--G-- 285 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~~~----------~~~~~~Gd~V~VkV~~id--~-- 285 (1176)
.+++|++|.|+|++|++||+||+|.. .+||||+|++++.+.-++ .+++++||.|+|+|++++ .
T Consensus 80 ~p~vGev~~G~V~~vt~fG~FVelg~---~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~ 156 (215)
T 2b8k_G 80 KPFKGEVVDGTVVSCSQHGFEVQVGP---MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSS 156 (215)
T ss_dssp CCCTTEEEEEEEEEEETTEEEEECTT---SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTE
T ss_pred ccCCCCEEEEEEEEEecceEEEEecC---cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCc
Confidence 57899999999999999999999963 799999999976533222 267999999999999998 2
Q ss_pred -cEeEEEEeec
Q 001046 286 -QKLSLSMRDV 295 (1176)
Q Consensus 286 -~ki~Ls~k~~ 295 (1176)
.+|+ ||++.
T Consensus 157 i~~Ig-Smk~~ 166 (215)
T 2b8k_G 157 IHAIG-SIKED 166 (215)
T ss_dssp EEEEE-ECCST
T ss_pred cEEEE-EcCCC
Confidence 3778 88763
No 121
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.65 E-value=4.9e-08 Score=100.94 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=57.6
Q ss_pred CCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeeccccccccc----C--------CcccccCCCCEEEEEEEEEe--C
Q 001046 220 EPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRI----G--------NAKDVVKRDQEVYVKVISVS--G 285 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~----~--------~~~~~~~~Gd~V~VkV~~id--~ 285 (1176)
.|.+|+++.|+|++|++||+||+|. ..+||||+|++++.+. . +..+.+++||.|+|||++++ .
T Consensus 78 ~~~~Gev~~G~V~~v~~fG~fV~l~---~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~ 154 (172)
T 2c35_B 78 RPFKGEVVDAVVTQVNKVGLFTEIG---PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDK 154 (172)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEET---TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEET
T ss_pred eCCCCCEEEEEEEEEeCCEEEEEEC---CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCC
Confidence 4679999999999999999999995 3579999999975422 2 22568999999999999998 2
Q ss_pred c---EeEEEEee
Q 001046 286 Q---KLSLSMRD 294 (1176)
Q Consensus 286 ~---ki~Ls~k~ 294 (1176)
+ +|. ||++
T Consensus 155 ~~~~~ig-sm~~ 165 (172)
T 2c35_B 155 NDIFAIG-SLMD 165 (172)
T ss_dssp TEEEEEE-ECCS
T ss_pred CCcEEEE-EecC
Confidence 2 666 7765
No 122
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.57 E-value=7.9e-08 Score=104.83 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=66.9
Q ss_pred CCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeeccccccccc---CCcccccCCCCEEEEEEEEEe-CcEeEEEEee
Q 001046 220 EPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRI---GNAKDVVKRDQEVYVKVISVS-GQKLSLSMRD 294 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~---~~~~~~~~~Gd~V~VkV~~id-~~ki~Ls~k~ 294 (1176)
.|++|+++.|+|++|.++|+||+|.+ ..+|++|+|++.+.+. .++.+.|++||.|.|+|++++ .+++.||+++
T Consensus 71 ~p~~GDiV~G~V~~v~~~ga~VdI~~--~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~ 147 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIYGWVVDIKA--PYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSIDPVLSVKG 147 (251)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSS--SSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETTEEEEEECCS
T ss_pred CCCCCCEEEEEEEEEeCceEEEEcCC--CeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCCCcEEEEEcc
Confidence 68899999999999999999999975 5799999999998777 788899999999999999998 4689999875
No 123
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.53 E-value=5.7e-08 Score=100.29 Aligned_cols=71 Identities=15% Similarity=0.275 Sum_probs=59.5
Q ss_pred CCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeeccccccccc----------CCcccccCCCCEEEEEEEEEe--C--
Q 001046 220 EPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRI----------GNAKDVVKRDQEVYVKVISVS--G-- 285 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~----------~~~~~~~~~Gd~V~VkV~~id--~-- 285 (1176)
.|.+|+++.|+|+++++||+||+++ ..+||||+|++++.+. .+..+.+++||.|+|||++++ .
T Consensus 81 ~p~~Gev~~G~V~~v~~fG~FV~l~---~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~ 157 (172)
T 3h0g_G 81 RPFRGEVVDAIVTTVNKMGFFANIG---PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATE 157 (172)
T ss_dssp CCCTTCEEECCCCEEETTEEECCBT---TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSC
T ss_pred ccCCCCEEEEEEEEEEcceEEEEeC---CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCC
Confidence 6889999999999999999999995 3679999999975533 234678999999999999998 2
Q ss_pred -cEeEEEEee
Q 001046 286 -QKLSLSMRD 294 (1176)
Q Consensus 286 -~ki~Ls~k~ 294 (1176)
.+|. ||++
T Consensus 158 ~~~Ig-tm~~ 166 (172)
T 3h0g_G 158 IFAIA-TMKE 166 (172)
T ss_dssp EEEEE-ECCS
T ss_pred ceEEE-EcCC
Confidence 3677 7775
No 124
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.46 E-value=3.2e-07 Score=98.82 Aligned_cols=73 Identities=21% Similarity=0.337 Sum_probs=65.9
Q ss_pred CCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeeccccccc-ccCCcccccCCCCEEEEEEEEEe-CcEeEEEEee
Q 001046 220 EPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATR-RIGNAKDVVKRDQEVYVKVISVS-GQKLSLSMRD 294 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~-~~~~~~~~~~~Gd~V~VkV~~id-~~ki~Ls~k~ 294 (1176)
.|++|+++.|+|++|.++|+||+|+. ..+|++|+|++... ...+..+.+++||.|.|+|++++ .+++.||+++
T Consensus 54 ~p~~GDiV~G~V~~v~~~~a~V~I~~--~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r~ 128 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAANGWAVDIYS--PYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKD 128 (229)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSS--SSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCCEEEECCS
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCC--CeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECCCCcEEEEEcc
Confidence 58999999999999999999999975 57999999999964 56788999999999999999998 4689999875
No 125
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.41 E-value=2.9e-07 Score=99.74 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=65.0
Q ss_pred CCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeeccccccc----ccCCcccccCCCCEEEEEEEEEe-CcEeEEEEee
Q 001046 220 EPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATR----RIGNAKDVVKRDQEVYVKVISVS-GQKLSLSMRD 294 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~----~~~~~~~~~~~Gd~V~VkV~~id-~~ki~Ls~k~ 294 (1176)
.|++|+++.|+|++|.++|+||+|.. +.+|++|+++++.. ...++.+.|++||.|+|+|++++ .+++.||+++
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~--~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~~~i~LS~k~ 140 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINS--PYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQG 140 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSS--SSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTTSCEEEECCS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCC--CeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCCCcEEEEEec
Confidence 68999999999999999999999975 67999999999863 34678889999999999999998 4589999874
No 126
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=98.32 E-value=7.2e-07 Score=99.12 Aligned_cols=93 Identities=18% Similarity=0.178 Sum_probs=74.1
Q ss_pred CCCCCCEEEEEEEEEe-eceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEe-CcEeEEEEeeccc
Q 001046 220 EPELYQVYKGRVSRVV-DTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVS-GQKLSLSMRDVDQ 297 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~-~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id-~~ki~Ls~k~~dq 297 (1176)
..++|+++.|+|++++ +||+||+++. ++++||||+|+++|.+.. .+++||.|.|. +.+| .+||+||+|+...
T Consensus 66 ~~~~G~~~~g~V~~v~~~~GaFVdiG~-~~~d~lvp~sel~~~~~~----~~~~Gd~v~v~-l~iD~~~Ri~ls~k~~~~ 139 (285)
T 3go5_A 66 TATQDQFGWGRVTEVRKDLGVFVDTGL-PDKEIVVSLDILPELKEL----WPKKGDQLYIR-LEVDKKDRIWGLLAYQED 139 (285)
T ss_dssp CSCSSSCEEEEEEEEETTTEEEEECSC-TTCCEEEEGGGSCSSGGG----SCCTTCEEEEE-EEECTTSCEEEEECCHHH
T ss_pred cccCCCEEEEEEEEEccCceEEEEECC-CCcEEEEEHHHCCccccc----ccCCCCEEEEE-EEECCCCcEEEEehhhhh
Confidence 5789999999999999 8999999952 247999999999886432 36899999766 5888 6799999986421
Q ss_pred cCCCCCChhhhhhhccCCCCCCCCCC
Q 001046 298 NTGKDLLPLKKISEDDALGNNPSGTR 323 (1176)
Q Consensus 298 ~tg~d~~P~~~~~~~~~~~~~~~g~~ 323 (1176)
. +||......+..|+.+.|.-
T Consensus 140 ~-----~~~~~~~~~~~~G~~V~g~V 160 (285)
T 3go5_A 140 F-----QRLARPAYNNMQNQNWPAIV 160 (285)
T ss_dssp H-----HHHCCCCCSCCTTCEEEEEE
T ss_pred c-----chhhhhhhhCCCCCEEEEEE
Confidence 1 38877667788888887764
No 127
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.14 E-value=3.6e-06 Score=104.17 Aligned_cols=65 Identities=25% Similarity=0.320 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHH--hcc-cCCCEEEEeccHHHHHHHHHHHHHH
Q 001046 526 YKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAE--AGY-TTRGKIGCTQPRRVAAMSVAKRVAE 590 (1176)
Q Consensus 526 ~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle--~~~-~~~~~Ilv~~PrR~lA~qva~rva~ 590 (1176)
.+.|.+++..+..+++++|+|++||||||.+...+.. ... ..+.+|+++.||..+|.++.+.+..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHH
Confidence 3568899999999999999999999999776554432 211 2345899999999999998876543
No 128
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=98.07 E-value=5.5e-06 Score=88.33 Aligned_cols=63 Identities=13% Similarity=0.131 Sum_probs=53.7
Q ss_pred CCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeeccccccccc--------------CCcccccCCCCEEEEEEEEEe
Q 001046 220 EPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRI--------------GNAKDVVKRDQEVYVKVISVS 284 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~--------------~~~~~~~~~Gd~V~VkV~~id 284 (1176)
.|.+|+++.|+|++|++||+||+|.+ ..+|++|++++..+++ ++....+++||.|+|+|.+++
T Consensus 78 ~p~vGEv~~G~Is~Vt~fGifVeL~g--~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~ 154 (218)
T 2ckz_B 78 KPFLGEIVTGWISKCTAEGIKVSLLG--IFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREV 154 (218)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECTT--SCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEE
T ss_pred cCCCCCEEEEEEEEEccCcEEEEccC--ccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEE
Confidence 57889999999999999999999965 4699999999976543 344667999999999999986
No 129
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=98.04 E-value=8e-06 Score=96.99 Aligned_cols=64 Identities=28% Similarity=0.520 Sum_probs=56.2
Q ss_pred CCCCCCCEEEEEEEEEeec--eeEEEeCCCCCeeeeeeccccccccc---------CCcccccCCCCEEEEEEEEEe
Q 001046 219 NEPELYQVYKGRVSRVVDT--GCFVQLNDFRGKEGLVHVSQIATRRI---------GNAKDVVKRDQEVYVKVISVS 284 (1176)
Q Consensus 219 ~~~~~g~~~~g~V~~i~~~--G~fV~l~~~~~~eGlvhisels~~~~---------~~~~~~~~~Gd~V~VkV~~id 284 (1176)
.++.+|++|.|+|++|.++ |+||+++. +.+||+|+|++++.++ .++.+++++||.|.|+|++..
T Consensus 41 ~~~~vGnIY~GkV~rv~p~~~aAFVdiG~--gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~ 115 (517)
T 2bx2_L 41 HEQKKANIYKGKITRIEPSLEAAFVDYGA--ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEE 115 (517)
T ss_dssp SCCCTTCEEEEEEEEEETTTTEEEEESSS--SSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECC
T ss_pred CcCCCCCEEEEEEEEeccCCceEEEEeCC--CcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeec
Confidence 3567899999999999999 99999986 7899999999987663 346788999999999999865
No 130
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.04 E-value=7.1e-06 Score=86.84 Aligned_cols=62 Identities=13% Similarity=0.129 Sum_probs=54.1
Q ss_pred CCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeeccccccccc-------------------CCcccccCCCCEEEEEE
Q 001046 220 EPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRI-------------------GNAKDVVKRDQEVYVKV 280 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~-------------------~~~~~~~~~Gd~V~VkV 280 (1176)
.|.+|+++.|+|+++++||+||+|+ ..+|++|++++.++++ ++....+++||.|+|+|
T Consensus 78 ~p~~GEv~~G~Vs~vt~~GifV~lg---~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV 154 (203)
T 3ayh_B 78 RPFRGEVMLGKIKSCSEEGIRVTIS---FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQI 154 (203)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECS---SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEE
T ss_pred ccCCCCEEEEEEEEEeccEEEEEEe---CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEE
Confidence 4789999999999999999999994 4799999999976654 45566799999999999
Q ss_pred EEEe
Q 001046 281 ISVS 284 (1176)
Q Consensus 281 ~~id 284 (1176)
.+++
T Consensus 155 ~~v~ 158 (203)
T 3ayh_B 155 ESED 158 (203)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 131
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=97.98 E-value=1.1e-05 Score=99.90 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=59.4
Q ss_pred CCCCC--EEEEEEEEEeeceeEEEeCCCCCeeeeeecccccc--cccC----------CcccccCCCCEEEEEEEEEe--
Q 001046 221 PELYQ--VYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIAT--RRIG----------NAKDVVKRDQEVYVKVISVS-- 284 (1176)
Q Consensus 221 ~~~g~--~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~--~~~~----------~~~~~~~~Gd~V~VkV~~id-- 284 (1176)
.++|+ ++.|+|++|++||+||+|.+. |.+||||+|++++ +++. +....+++||.|+|+|.+++
T Consensus 556 ~~vGe~~~f~g~V~~V~~~G~fV~L~~~-gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~ 634 (644)
T 2id0_A 556 DKAGTDTRFAAEIVDISRGGMRVRLVDN-GAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRME 634 (644)
T ss_dssp GGTTSCCCEEEEEEEEETTEEEEEETTT-CCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETT
T ss_pred hccCCCceEEEEEEEEeCCceEEEEcCC-cEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCC
Confidence 35688 999999999999999999653 7899999999973 3311 45678999999999999999
Q ss_pred CcEeEEEE
Q 001046 285 GQKLSLSM 292 (1176)
Q Consensus 285 ~~ki~Ls~ 292 (1176)
.++|.|++
T Consensus 635 ~~~I~~~l 642 (644)
T 2id0_A 635 TRSIIARP 642 (644)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 57899886
No 132
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.77 E-value=1.5e-05 Score=74.68 Aligned_cols=43 Identities=30% Similarity=0.594 Sum_probs=39.7
Q ss_pred CCCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeeccccccccc
Q 001046 219 NEPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRI 263 (1176)
Q Consensus 219 ~~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~ 263 (1176)
..+++|+++.+.|+.+++||+||+|.+ +.+||||+|++++.++
T Consensus 57 ~~l~~Ge~V~g~V~~i~~fG~fv~l~~--~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 57 GNPQQGDRVEGKIKSITDFGIFIGLDG--GIDGLVHLSDISWAQA 99 (101)
T ss_dssp CCCCTTCEEEEEEEECCSEEEEECTTS--CEEEEEEEEEEEECCC
T ss_pred cCCCCCCEEEEEEEEeCCcEEEEEcCC--CceEEEEHHHCccCcC
Confidence 478999999999999999999999976 7899999999998765
No 133
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.75 E-value=4.6e-05 Score=93.37 Aligned_cols=64 Identities=16% Similarity=0.246 Sum_probs=50.8
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHH
Q 001046 523 LPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKR 587 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~r 587 (1176)
..+.+.|.+++..+..++.++|.|++||||||.+...+.. ....+.+|+++.||..+|..+.+.
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~-l~~~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADL-AESLGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHH-HHHTTCCEEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHH-HHhcCCeEEEecCcHHHHHHhHhh
Confidence 3456779999999999999999999999999887655433 233456899999999988777654
No 134
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=97.75 E-value=2.2e-05 Score=100.65 Aligned_cols=69 Identities=26% Similarity=0.316 Sum_probs=58.7
Q ss_pred CCEEEEEEEEEeeceeEEEeCCCCCeeeeeeccccc--cccc-----------CC----cccccCCCCEEEEEEEEEeC-
Q 001046 224 YQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIA--TRRI-----------GN----AKDVVKRDQEVYVKVISVSG- 285 (1176)
Q Consensus 224 g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels--~~~~-----------~~----~~~~~~~Gd~V~VkV~~id~- 285 (1176)
|+++.|+|++|++||+||.|.++ |.+|+||+|+++ .+++ .+ ....+++||.|+|+|..++.
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~-giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~ 965 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKF-GVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDP 965 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTT-CCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCC-CeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCc
Confidence 77999999999999999999864 789999999997 4432 12 35789999999999999873
Q ss_pred ----cEeEEEEe
Q 001046 286 ----QKLSLSMR 293 (1176)
Q Consensus 286 ----~ki~Ls~k 293 (1176)
+||.|+||
T Consensus 966 ~~~~~kI~Lslk 977 (977)
T 2wp8_J 966 ITSKRKAELLLK 977 (977)
T ss_dssp SSCCCCCCEEEC
T ss_pred ccCCCceEEEeC
Confidence 68999986
No 135
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.63 E-value=4.6e-05 Score=95.06 Aligned_cols=66 Identities=24% Similarity=0.369 Sum_probs=54.8
Q ss_pred CchHHHHHHHHHHHc-CCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHH
Q 001046 524 PIYKLKKELIQAVHD-NQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAE 590 (1176)
Q Consensus 524 Pi~~~q~~ii~ai~~-~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~ 590 (1176)
.+.+.|.+++..+.. ....||.||+|||||+++...+... ...+.+|+++.|+-.++.+++.++..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l-~~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQA-VKQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHH-HhCCCeEEEEcCchHHHHHHHHHHHh
Confidence 367788888887765 5589999999999999888777664 34567899999999999999999864
No 136
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.63 E-value=8.6e-05 Score=88.72 Aligned_cols=64 Identities=19% Similarity=0.170 Sum_probs=45.8
Q ss_pred chHHHHHHHHHHHc----CC-eEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHH
Q 001046 525 IYKLKKELIQAVHD----NQ-VLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRV 588 (1176)
Q Consensus 525 i~~~q~~ii~ai~~----~~-~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rv 588 (1176)
+.+.|.+++..+.. ++ .++|.|+.|||||+.+...+..........|+++.||..+|..+..++
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 44567777776533 34 999999999999988766554432222237999999999988877665
No 137
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.62 E-value=4.8e-05 Score=84.89 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=60.1
Q ss_pred CCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeeccccccc----ccC------CcccccCCCCEEEEEEEEEe-CcEe
Q 001046 220 EPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATR----RIG------NAKDVVKRDQEVYVKVISVS-GQKL 288 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~----~~~------~~~~~~~~Gd~V~VkV~~id-~~ki 288 (1176)
.|++|+++.|+|++|.++|+||+|.. ..+|++|+|++... +.. +..+.|++||.|.++|++++ ..++
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s--~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~~~~i 169 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNS--RLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAV 169 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSS--SSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTTEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECC--CcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCCCCCE
Confidence 68999999999999999999999974 45899999998642 221 34578999999999999998 5689
Q ss_pred EEEEee
Q 001046 289 SLSMRD 294 (1176)
Q Consensus 289 ~Ls~k~ 294 (1176)
.||+++
T Consensus 170 ~LStr~ 175 (308)
T 2nn6_H 170 SLHTRS 175 (308)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 999885
No 138
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=97.62 E-value=4.8e-05 Score=95.84 Aligned_cols=68 Identities=26% Similarity=0.325 Sum_probs=51.9
Q ss_pred CEEEEEEEEEeeceeEEEeCCCCCeeeeeeccccc--cccc-----------CC----cccccCCCCEEEEEEEEEe-C-
Q 001046 225 QVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIA--TRRI-----------GN----AKDVVKRDQEVYVKVISVS-G- 285 (1176)
Q Consensus 225 ~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels--~~~~-----------~~----~~~~~~~Gd~V~VkV~~id-~- 285 (1176)
+++.|+|++|++||+||.|.++ |.+||||+|+++ .+++ .+ ....+++||.|+|+|+.++ .
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~-giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~ 749 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKF-GVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 749 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTT-TEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC------
T ss_pred eEEEEEEEEEECCeEEEEEeCC-CcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECcc
Confidence 5899999999999999999864 689999999996 4432 23 2578999999999999998 3
Q ss_pred ---cEeEEEEe
Q 001046 286 ---QKLSLSMR 293 (1176)
Q Consensus 286 ---~ki~Ls~k 293 (1176)
+||.|++|
T Consensus 750 ~~~~kI~lslk 760 (760)
T 2vnu_D 750 TSKRKAELLLK 760 (760)
T ss_dssp --CCEEEC---
T ss_pred ccCCcEEEEeC
Confidence 69999986
No 139
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=97.41 E-value=0.00024 Score=80.21 Aligned_cols=65 Identities=20% Similarity=0.121 Sum_probs=56.5
Q ss_pred CCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEe--Cc--EeEEEEeec
Q 001046 222 ELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVS--GQ--KLSLSMRDV 295 (1176)
Q Consensus 222 ~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id--~~--ki~Ls~k~~ 295 (1176)
..|+++.|+|.++.++|+||+++ +.+|++|.+++. |++.+++||.|+|.|++++ .+ .+.||.+..
T Consensus 133 ~~GeIV~G~V~ri~~~~v~VDlG---k~EgiLp~sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~p 201 (344)
T 1hh2_P 133 LKGTVTTAEVIRVMGEWADIRIG---KLETRLPKKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRRVP 201 (344)
T ss_dssp CTTCEEEEEEEEECSSEEEEEET---TEEEEEEGGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESSSH
T ss_pred cCCCEEEEEEEEEecCcEEEEeC---CeEEEEeHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEeecc
Confidence 47999999999999999999995 589999999986 6789999999999999998 22 677777643
No 140
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.35 E-value=0.00071 Score=72.56 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=67.8
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCC-ccCCeeEEEeecccccCCCce
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGC-RLGEEVGYAIRFEDCTGPDTV 615 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~-~~G~~vGy~ir~~~~~~~~t~ 615 (1176)
..+..+++.|++|+||||.+.+.+.... ..+.++++++|...- + +. .+....|. . ...
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~-~~g~kVli~~~~~d~------r-----~~~~i~srlG~--~-------~~~ 68 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE-YADVKYLVFKPKIDT------R-----SIRNIQSRTGT--S-------LPS 68 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCCG------G-----GCSSCCCCCCC--S-------SCC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEEeccCc------h-----HHHHHHHhcCC--C-------ccc
Confidence 4577899999999999999999887753 335578888774310 0 00 11111111 0 011
Q ss_pred EEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCC
Q 001046 616 IKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSAT 677 (1176)
Q Consensus 616 I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSAT 677 (1176)
+.+.+..-++..+.....-..+++||||||+- +..+ ++..+..+... ++.+|++.-.
T Consensus 69 ~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~--l~~~-~ve~l~~L~~~--gi~Vil~Gl~ 125 (223)
T 2b8t_A 69 VEVESAPEILNYIMSNSFNDETKVIGIDEVQF--FDDR-ICEVANILAEN--GFVVIISGLD 125 (223)
T ss_dssp EEESSTHHHHHHHHSTTSCTTCCEEEECSGGG--SCTH-HHHHHHHHHHT--TCEEEEECCS
T ss_pred cccCCHHHHHHHHHHHhhCCCCCEEEEecCcc--CcHH-HHHHHHHHHhC--CCeEEEEecc
Confidence 22445555666665443345689999999984 3333 44455555443 6777776653
No 141
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.31 E-value=0.00048 Score=70.71 Aligned_cols=71 Identities=11% Similarity=0.168 Sum_probs=59.8
Q ss_pred CCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEe-CcEeEEEE
Q 001046 220 EPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVS-GQKLSLSM 292 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id-~~ki~Ls~ 292 (1176)
.|++|+++.|+|+.+..++++|+|... ..+|++|++++.. ...+....+++||.|.++|.+++ ..++.|+.
T Consensus 4 ~P~~gDvViG~V~~v~~~~~~VdI~~~-~~~a~L~~s~~~g-~~k~~r~~l~~GDlV~ArV~~~~~~~~~~Ltc 75 (175)
T 2ja9_A 4 IPSVNDFVIGVIIGTFSDSYKVSLQNF-SSSVSLSYMAFPN-ASKKNRPTLQVGDLVYARVCTAEKELEAEIEC 75 (175)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEESSTT-SCCEEEETTSSTT-CCSSSCCCCCTTCEEEEEEEECCTTSCCEEES
T ss_pred cCCCcCEEEEEEEEEECcEEEEEECCC-CccEEEEHHHCCc-hhhhhhccCCCCCEEEEEEEEecCCCceEEEe
Confidence 478999999999999999999999741 3699999999863 33566778999999999999998 45788874
No 142
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.21 E-value=0.008 Score=74.61 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=53.9
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc---CCCEEEEeccHHHHHHHHHHHHHHHhCCc
Q 001046 524 PIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT---TRGKIGCTQPRRVAAMSVAKRVAEEFGCR 595 (1176)
Q Consensus 524 Pi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~---~~~~Ilv~~PrR~lA~qva~rva~e~g~~ 595 (1176)
.+.+.|.+++. ..+..++|.|+.|||||+++..-+...... ...+|+++.+++.+|.++..++...+|..
T Consensus 9 ~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~ 81 (647)
T 3lfu_A 9 SLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS 81 (647)
T ss_dssp TCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC
T ss_pred cCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccc
Confidence 35677888876 346778999999999999887765543222 23589999999999999999998887653
No 143
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.90 E-value=0.0057 Score=62.75 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.++.+++.||+|+||||.+-..+..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999887766544
No 144
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.89 E-value=0.0016 Score=67.61 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=31.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPR 577 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~Pr 577 (1176)
.++..+++|+.||||||.+.+.+.... ..+.++++++|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~-~~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK-LGKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH-HTTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeec
Confidence 477899999999999999988776642 335678888886
No 145
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.89 E-value=0.012 Score=72.33 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=57.0
Q ss_pred cCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc-CCCEEEEeccHHHHHHHHHHHHHHHh
Q 001046 522 SLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT-TRGKIGCTQPRRVAAMSVAKRVAEEF 592 (1176)
Q Consensus 522 ~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~-~~~~Ilv~~PrR~lA~qva~rva~e~ 592 (1176)
.+.+.++|..++.++...+.+++.++-|+|||+.+..+++..... .+..|+|+.|++..|..+...+...+
T Consensus 161 ~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp BCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 356789999999988777899999999999998877665543333 34489999999999999887776654
No 146
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.86 E-value=0.0032 Score=74.00 Aligned_cols=122 Identities=19% Similarity=0.225 Sum_probs=72.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEE--EEeccHHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCceE
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKI--GCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVI 616 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~I--lv~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t~I 616 (1176)
+.+++++|++|+||||.+..++.... ..+++| +...+.|..+.+....++...|.++ |.. .. .
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~-~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~-----~~~--~~---~---- 161 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK-KRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQV-----YGE--PN---N---- 161 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCE-----ECC--TT---C----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEecCccchhHHHHHHHHHHhcCCce-----eec--cc---c----
Confidence 45889999999999998877665432 234444 3455778888777766666554332 000 00 0
Q ss_pred EEeChHHHHHHHhhCCCCCCCceEEEcCCCcCC--CchhHHHHHHHHHH-hhCCCccEEEEcCCC
Q 001046 617 KYMTDGMLLREILIDDNLSQYSVIMLDEAHERT--IHTDVLFGLLKQLV-KRRPDLRLIVTSATL 678 (1176)
Q Consensus 617 ~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~--~~~d~ll~llk~~~-~~r~~~kvIlmSATl 678 (1176)
..+..+....+......++++||||++..-. .+.. ++..+..+. ...|+.-+++++|+.
T Consensus 162 --~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~-lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 162 --QNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETK-LLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp --SCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTH-HHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHH-HHHHHHHHHHhhCCcceEEEEeCcc
Confidence 1232333333333334689999999997322 3333 344444433 346788888888886
No 147
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.80 E-value=0.0029 Score=66.11 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=32.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPR 577 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~Pr 577 (1176)
.++..+++|+.||||||.+...+.... ..+.++++++|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEec
Confidence 467899999999999999998877653 446688998886
No 148
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.73 E-value=0.025 Score=65.51 Aligned_cols=152 Identities=13% Similarity=0.213 Sum_probs=89.9
Q ss_pred cCCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHh-cccCCCEEEEeccHHHHHHHHHHHHHHHhCC-c--cC
Q 001046 522 SLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEA-GYTTRGKIGCTQPRRVAAMSVAKRVAEEFGC-R--LG 597 (1176)
Q Consensus 522 ~LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~-~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~-~--~G 597 (1176)
.+.+.++|..++.++...+.+++..+-+.|||+.+..+++.. ....+..|+++.|++..|..+...+...+.. + +.
T Consensus 161 p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~ 240 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (385)
T ss_dssp ECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTS
T ss_pred CCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhh
Confidence 456789999999988777889999999999998877666553 3334558999999999998887666543311 1 11
Q ss_pred Cee-E---EEeecccccCCCceEEEeC--hHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCcc-
Q 001046 598 EEV-G---YAIRFEDCTGPDTVIKYMT--DGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLR- 670 (1176)
Q Consensus 598 ~~v-G---y~ir~~~~~~~~t~I~~~T--~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~k- 670 (1176)
..+ . ..+.+ ..+..|.+.+ ++.+ + . .++.++|+||+|.-.-..+++ ..+...+..+++.+
T Consensus 241 ~~~~~~~~~~I~f----~nGs~i~~lsa~~~sl-r----G---~~~~~viiDE~a~~~~~~el~-~al~~~ls~~~~~ki 307 (385)
T 2o0j_A 241 PGIVEWNKGSIEL----DNGSSIGAYASSPDAV-R----G---NSFAMIYIEDCAFIPNFHDSW-LAIQPVISSGRRSKI 307 (385)
T ss_dssp CCEEEECSSEEEE----TTSCEEEEEECSHHHH-H----T---SCCSEEEEESGGGSTTHHHHH-HHHHHHHHSTTCCEE
T ss_pred hhhccCCccEEEe----CCCCEEEEEECCCCCc-c----C---CCCCEEEechhhhcCCCHHHH-HHHHHHhhcCCCCcE
Confidence 111 1 11222 1234444443 2211 1 1 235789999999633212333 33444444433444
Q ss_pred EEEEcCCCCHHHHHhhh
Q 001046 671 LIVTSATLDAEKFSGYF 687 (1176)
Q Consensus 671 vIlmSATl~~~~~~~~f 687 (1176)
+++.|++.. ..|...+
T Consensus 308 iiiSTP~g~-n~fy~l~ 323 (385)
T 2o0j_A 308 IITTTPNGL-NHFYDIW 323 (385)
T ss_dssp EEEECCCSS-SHHHHHH
T ss_pred EEEeCCCCc-hhHHHHH
Confidence 455555554 3444444
No 149
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.62 E-value=0.0043 Score=56.57 Aligned_cols=72 Identities=17% Similarity=0.108 Sum_probs=60.2
Q ss_pred hhcccccchhHHHHHHHHhhhCCCChhHHHHHHHHHhhCCChHHHHHHHHHc-CCCCCHHHHHHHHHHHHhhCC
Q 001046 10 LKKLEYFSLVSKVCSELETHLGFGDKVLAEFITELGRNCETVDEFDSKLKEN-GAEMPDYFVRTLLTIIHAILP 82 (1176)
Q Consensus 10 l~~le~lslvskv~~el~nhlgi~dk~laefii~l~~~~~~~~~F~~~l~~~-ga~~~~~~~~~l~~li~~~~p 82 (1176)
|.+-+.=.|-.-|...|...||++|.+|.+||+++.+++.+.......|... +.+ ...|+..|++++....-
T Consensus 10 ~~kv~l~~lkpWI~kkv~e~LG~eD~~lVd~i~~~l~~~~dpk~l~~~L~~fLd~~-a~~Fv~eLW~lL~~aq~ 82 (92)
T 1x4q_A 10 LSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDS-TLRFVDKLFEAVEEGRS 82 (92)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTCCHHHHHHHHTTTTGGG-THHHHHHHHHHHHHHSC
T ss_pred chHHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHh
Confidence 4443334566788899999999999999999999999999999999999874 335 78999999999988753
No 150
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.59 E-value=0.003 Score=78.33 Aligned_cols=67 Identities=13% Similarity=0.263 Sum_probs=55.6
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHH
Q 001046 524 PIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAE 590 (1176)
Q Consensus 524 Pi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~ 590 (1176)
.+.+.|.+++..+..+..++|.||+|+|||+.+...+.......+.+|+++.|+..+|.++..++..
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 3678899999998888999999999999999887766553322466899999999999999998754
No 151
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.011 Score=66.84 Aligned_cols=44 Identities=11% Similarity=0.182 Sum_probs=31.7
Q ss_pred CCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCCC
Q 001046 635 SQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLD 679 (1176)
Q Consensus 635 ~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl~ 679 (1176)
....+|||||+|.-. ..++++.++.........+-+|+.++|++
T Consensus 131 ~~~~ii~lDE~d~l~-~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 131 KRKTLILIQNPENLL-SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp SCEEEEEEECCSSSC-CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CCceEEEEecHHHhh-cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 456799999999544 77888887764333344567888899986
No 152
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.51 E-value=0.0046 Score=72.71 Aligned_cols=122 Identities=20% Similarity=0.265 Sum_probs=73.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEE--EEeccHHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCceE
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKI--GCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVI 616 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~I--lv~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t~I 616 (1176)
..+++++|++|+||||.+..++.... ..+.++ +..-|.|..|.+....++...|.++ |.. ...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~-~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv-----~~~----~~~----- 164 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQ-KRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV-----FGN----PQE----- 164 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE-----ECC----TTC-----
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE-----Eec----CCC-----
Confidence 35889999999999998877665432 233444 4456888888777776665554332 100 000
Q ss_pred EEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-hCCCccEEEEcCCC
Q 001046 617 KYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK-RRPDLRLIVTSATL 678 (1176)
Q Consensus 617 ~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~-~r~~~kvIlmSATl 678 (1176)
..+.-+++..+....-.++++||||.+- |....+.++..++.+.. ..|+.-+++++||.
T Consensus 165 --~dp~~i~~~al~~a~~~~~DvVIIDTaG-rl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~ 224 (443)
T 3dm5_A 165 --KDAIKLAKEGVDYFKSKGVDIIIVDTAG-RHKEDKALIEEMKQISNVIHPHEVILVIDGTI 224 (443)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECCC-CSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEECCC-cccchHHHHHHHHHHHHhhcCceEEEEEeCCC
Confidence 1232222222221122468999999996 44444445555555443 46788889999986
No 153
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.48 E-value=0.0064 Score=68.10 Aligned_cols=125 Identities=26% Similarity=0.307 Sum_probs=69.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEE--eccHHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCce
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGC--TQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 615 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv--~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t~ 615 (1176)
.+++++++|++|+||||.+..+........+.+|++ .-|.|..+.+....++...|..+- ..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~-------------- 167 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VC-------------- 167 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BC--------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeE--ec--------------
Confidence 578999999999999998887665533223334433 345566555444444433332210 00
Q ss_pred EEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-hCCCccEEEEcCCCCHHHHHh
Q 001046 616 IKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK-RRPDLRLIVTSATLDAEKFSG 685 (1176)
Q Consensus 616 I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~-~r~~~kvIlmSATl~~~~~~~ 685 (1176)
..+..+...+ . .+.++++||||.+- +......++..+..++. ..++-.+++++||.....+.+
T Consensus 168 ---~~~~~l~~al-~--~~~~~dlvIiDT~G-~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~ 231 (296)
T 2px0_A 168 ---YTKEEFQQAK-E--LFSEYDHVFVDTAG-RNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKH 231 (296)
T ss_dssp ---SSHHHHHHHH-H--HGGGSSEEEEECCC-CCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHH
T ss_pred ---CCHHHHHHHH-H--HhcCCCEEEEeCCC-CChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHH
Confidence 1223332222 2 24789999999776 44443334444444433 234556888888876544443
No 154
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.0038 Score=79.38 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=55.3
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHH
Q 001046 524 PIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAE 590 (1176)
Q Consensus 524 Pi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~ 590 (1176)
.+.+.|.+++..+..+..++|.||+|||||+.+...+.......+.+|+++.|+..+|.++..++..
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 3678899999999888999999999999998877665543222356899999999999999999865
No 155
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.30 E-value=0.013 Score=61.02 Aligned_cols=34 Identities=21% Similarity=0.096 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT 574 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~ 574 (1176)
+.+++.||+|+|||+.+-.+.... ...+..++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~-~~~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL-AKRNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH-HTTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEE
Confidence 789999999999998766554433 2333444443
No 156
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.29 E-value=0.0061 Score=77.39 Aligned_cols=67 Identities=13% Similarity=0.263 Sum_probs=55.4
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHH
Q 001046 524 PIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAE 590 (1176)
Q Consensus 524 Pi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~ 590 (1176)
.+.+.|.+++..+..+..++|.||+|+|||+.+...+.......+.+|+++.|+..+|.++..++..
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 4678899999998888999999999999998877666543322466899999999999999998753
No 157
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.28 E-value=0.0065 Score=64.97 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=33.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRR 578 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR 578 (1176)
.++..+++|+-||||||.+...+.... ..+.++++++|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~-~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ-IAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH-TTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEeecC
Confidence 578899999999999999999887763 4466888888864
No 158
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.25 E-value=0.0069 Score=68.59 Aligned_cols=68 Identities=13% Similarity=0.215 Sum_probs=55.2
Q ss_pred CCCCCEEEEEEEE----EeeceeEEEeCC-CCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEeCc----EeEEE
Q 001046 221 PELYQVYKGRVSR----VVDTGCFVQLND-FRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVSGQ----KLSLS 291 (1176)
Q Consensus 221 ~~~g~~~~g~V~~----i~~~G~fV~l~~-~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id~~----ki~Ls 291 (1176)
...|+++.|+|.+ +.++++||+|+. ..+.+|++|.+|+. |.+.|++||.|+|.|.+++.. .|.||
T Consensus 128 ~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi------P~E~~~~GDrVkvyV~~V~~~~kgpqI~LS 201 (366)
T 1k0r_A 128 TREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITLS 201 (366)
T ss_dssp CCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEEE
T ss_pred hcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC------CCccCCCCCEEEEEEEEEecCCCccEEEEE
Confidence 3489999999999 999999999963 11379999999875 568999999999999999832 45555
Q ss_pred Eee
Q 001046 292 MRD 294 (1176)
Q Consensus 292 ~k~ 294 (1176)
...
T Consensus 202 RT~ 204 (366)
T 1k0r_A 202 RTH 204 (366)
T ss_dssp SSC
T ss_pred eCC
Confidence 544
No 159
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.25 E-value=0.0066 Score=64.28 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=32.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRR 578 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR 578 (1176)
.++..+++|+-||||||.+...+... ...+.++++++|..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~-~~~g~kVli~k~~~ 66 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRT-QFAKQHAIVFKPCI 66 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHH-HHTTCCEEEEECC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHCCCEEEEEEecc
Confidence 46788899999999999999988775 34466899998865
No 160
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.17 E-value=0.0056 Score=61.27 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=20.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.++.+++.||+|+||||.+-.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999887665443
No 161
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.08 E-value=0.023 Score=63.85 Aligned_cols=123 Identities=22% Similarity=0.267 Sum_probs=67.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEE--eccHHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCce
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGC--TQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 615 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv--~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t~ 615 (1176)
.+++++++|++||||||.+..+..... ..+++|++ .-++|..+.+....+.+..+..+ +. . ....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~-~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~-------~~-~-~s~~--- 169 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFRAAAIEQLKIWGERVGATV-------IS-H-SEGA--- 169 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE-------EC-C-STTC---
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH-hcCCEEEEEccccccHHHHHHHHHHHHHcCCcE-------Ee-c-CCcc---
Confidence 356889999999999998877665432 23445543 34667666555444555544321 00 0 0000
Q ss_pred EEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-------hCCCccEEEEcCCC
Q 001046 616 IKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK-------RRPDLRLIVTSATL 678 (1176)
Q Consensus 616 I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~-------~r~~~kvIlmSATl 678 (1176)
.+..+....+......++++||||++- +....+.++..++.+.. ..|+.-++++.||.
T Consensus 170 ----~~~~v~~~al~~a~~~~~dvvIiDtpg-~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t 234 (306)
T 1vma_A 170 ----DPAAVAFDAVAHALARNKDVVIIDTAG-RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT 234 (306)
T ss_dssp ----CHHHHHHHHHHHHHHTTCSEEEEEECC-CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG
T ss_pred ----CHHHHHHHHHHHHHhcCCCEEEEECCC-chhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 112221111111124678999999997 55555555555554433 13555577777774
No 162
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.95 E-value=0.034 Score=58.64 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=23.4
Q ss_pred HHHHHHHcCC---eEEEEcCCCCcHHHHHHHHHHH
Q 001046 531 ELIQAVHDNQ---VLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 531 ~ii~ai~~~~---~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+...+..++ .++|.||+|+|||+.+-.+...
T Consensus 34 ~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 34 ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp HHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4444555554 7999999999999887766544
No 163
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.90 E-value=0.0079 Score=63.63 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=31.4
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRR 578 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR 578 (1176)
..|...+++|+-||||||.+...+.... ..+.++++++|..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~-~~g~kvli~kp~~ 66 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGI-YAKQKVVVFKPAI 66 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH-HcCCceEEEEecc
Confidence 4578899999999999998888776543 3356789998854
No 164
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.90 E-value=0.017 Score=65.58 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=26.5
Q ss_pred chHHHHHHHHH----HHcCC---eEEEEcCCCCcHHHHHHHHHHH
Q 001046 525 IYKLKKELIQA----VHDNQ---VLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 525 i~~~q~~ii~a----i~~~~---~vIv~apTGSGKTt~~~~~lle 562 (1176)
+|++|.+++.. +.+++ .+++.||+|+|||+.+-.+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHH
Confidence 35556555444 44554 4899999999999887766544
No 165
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=95.71 E-value=0.017 Score=63.77 Aligned_cols=72 Identities=10% Similarity=0.032 Sum_probs=60.3
Q ss_pred CCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEeC-cEeEEEEee
Q 001046 220 EPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVSG-QKLSLSMRD 294 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id~-~ki~Ls~k~ 294 (1176)
-|++|+++-|+|+++....+.|+|.. ...|++|++++.. ...+....|++||.|.++|++++. ..+.|++.+
T Consensus 124 iP~vGDiVIG~Vt~v~~~~~~VdI~s--~~~a~L~~~~f~G-atk~~r~~f~~GDlV~ArV~s~~~~~~~eLsc~~ 196 (289)
T 2nn6_G 124 VPVKGDHVIGIVTAKSGDIFKVDVGG--SEPASLSYLSFEG-ATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCID 196 (289)
T ss_dssp CCCSSEEEEEEEEEEETTEEEEECSS--SSCCCEESCSSSC-CSSCSSSSSCTTCEEEEEEEECCTTSCCEEECSB
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECC--CceeEEehhhcCc-chhhhhhhcCCCCEEEEEEEEcCCCCceEEEecc
Confidence 58999999999999999999999975 4689999998863 234567789999999999999874 467777643
No 166
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.64 E-value=0.0097 Score=73.15 Aligned_cols=110 Identities=22% Similarity=0.333 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHc--CCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEEEe
Q 001046 527 KLKKELIQAVHD--NQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAI 604 (1176)
Q Consensus 527 ~~q~~ii~ai~~--~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy~i 604 (1176)
.-|.+++..+.. ....+|+|+-|.|||+.+-+.+.... +.++||.|+..++..+.+.. +.
T Consensus 178 ~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~----~~~~vtAP~~~a~~~l~~~~----~~---------- 239 (671)
T 2zpa_A 178 PEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPAKASTDVLAQFA----GE---------- 239 (671)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS----SCEEEECSSCCSCHHHHHHH----GG----------
T ss_pred HHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH----hCcEEECCCHHHHHHHHHHh----hC----------
Confidence 457778877765 45789999999999988888777642 34799999998887655532 11
Q ss_pred ecccccCCCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCCC
Q 001046 605 RFEDCTGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLD 679 (1176)
Q Consensus 605 r~~~~~~~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl~ 679 (1176)
.|-|+.|.-++. .+.+.++||||||= ++...+ |+.++. ....|+||-|++
T Consensus 240 ----------~i~~~~Pd~~~~------~~~~~dlliVDEAA--aIp~pl----l~~ll~---~~~~v~~~tTv~ 289 (671)
T 2zpa_A 240 ----------KFRFIAPDALLA------SDEQADWLVVDEAA--AIPAPL----LHQLVS---RFPRTLLTTTVQ 289 (671)
T ss_dssp ----------GCCBCCHHHHHH------SCCCCSEEEEETGG--GSCHHH----HHHHHT---TSSEEEEEEEBS
T ss_pred ----------CeEEeCchhhhh------CcccCCEEEEEchh--cCCHHH----HHHHHh---hCCeEEEEecCC
Confidence 155667765432 24568999999994 455444 444443 335688899985
No 167
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.60 E-value=0.024 Score=65.20 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~lle 562 (1176)
.++|+||+|+|||+.+-.++-.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999988765544
No 168
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.57 E-value=0.016 Score=61.32 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=27.3
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT 574 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~ 574 (1176)
+..|..++|.||+||||||.+.+++..... .++.++++
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~-~~~~v~~~ 57 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLR-DGDPCIYV 57 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHH-HTCCEEEE
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHH-CCCeEEEE
Confidence 356889999999999999988877654322 23455543
No 169
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.48 E-value=0.032 Score=62.16 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=17.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..+++.||+|+|||+.+-.+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4579999999999998776443
No 170
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.40 E-value=0.022 Score=65.27 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=20.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+..++|.||+|+|||+.+-.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999887765544
No 171
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.39 E-value=0.024 Score=65.14 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+.++|.||+|+|||+.+-.+..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999887665543
No 172
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.36 E-value=0.026 Score=55.81 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=21.5
Q ss_pred HHHHHHHcCCeEEEEcCCCCcHHHHHHHH
Q 001046 531 ELIQAVHDNQVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 531 ~ii~ai~~~~~vIv~apTGSGKTt~~~~~ 559 (1176)
.+-.+...+..+++.||+|+|||+.+-..
T Consensus 16 ~~~~~a~~~~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 16 RLQQLSETDIAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp HHHHHTTCCSCEEEESSTTSSHHHHHHHH
T ss_pred HHHHHhCCCCCEEEECCCCCCHHHHHHHH
Confidence 33334457788999999999999776543
No 173
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.33 E-value=0.051 Score=61.70 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=60.5
Q ss_pred HHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCc-cCCeeEEEeecccccCCC
Q 001046 535 AVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCR-LGEEVGYAIRFEDCTGPD 613 (1176)
Q Consensus 535 ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~-~G~~vGy~ir~~~~~~~~ 613 (1176)
.+..+..++|+|||||||||.+-..+ .......+.|.+--+. + +... ....+++...
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~-g~~~~~~g~i~i~~~~-e------------~~~~~~~~~i~~~~g-------- 224 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIM-EFIPKEERIISIEDTE-E------------IVFKHHKNYTQLFFG-------- 224 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGG-GGSCTTSCEEEEESSC-C------------CCCSSCSSEEEEECB--------
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHh-CCCcCCCcEEEECCee-c------------cccccchhEEEEEeC--------
Confidence 35789999999999999999766543 2222234455443221 1 1111 1122332110
Q ss_pred ceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCCCHHHHH
Q 001046 614 TVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFS 684 (1176)
Q Consensus 614 t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl~~~~~~ 684 (1176)
.|+-.+..+....+.+.++||+||+- + . ....+++.+.. ...-+|+.+...++....
T Consensus 225 -------gg~~~r~~la~aL~~~p~ilildE~~--~--~-e~~~~l~~~~~--g~~tvi~t~H~~~~~~~~ 281 (330)
T 2pt7_A 225 -------GNITSADCLKSCLRMRPDRIILGELR--S--S-EAYDFYNVLCS--GHKGTLTTLHAGSSEEAF 281 (330)
T ss_dssp -------TTBCHHHHHHHHTTSCCSEEEECCCC--S--T-HHHHHHHHHHT--TCCCEEEEEECSSHHHHH
T ss_pred -------CChhHHHHHHHHhhhCCCEEEEcCCC--h--H-HHHHHHHHHhc--CCCEEEEEEcccHHHHHh
Confidence 33333444444456778999999984 3 1 23445554432 223366666666644433
No 174
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.32 E-value=0.066 Score=55.65 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=21.5
Q ss_pred HHHHHHHcC--CeEEEEcCCCCcHHHHHHHHHH
Q 001046 531 ELIQAVHDN--QVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 531 ~ii~ai~~~--~~vIv~apTGSGKTt~~~~~ll 561 (1176)
.+...+..+ ..+++.||+|+|||+.+-.+..
T Consensus 28 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 28 RLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp HHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 344444444 3599999999999987765543
No 175
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.28 E-value=0.02 Score=67.07 Aligned_cols=108 Identities=22% Similarity=0.171 Sum_probs=66.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCceEE
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIK 617 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t~I~ 617 (1176)
..++.+|.|+.|||||+.+...+. ...++++.||++++.++.+++... |. ...+...
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~------~~~~lVlTpT~~aa~~l~~kl~~~-----~~------------~~~~~~~ 216 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN------FEEDLILVPGRQAAEMIRRRANAS-----GI------------IVATKDN 216 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC------TTTCEEEESCHHHHHHHHHHHTTT-----SC------------CCCCTTT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc------cCCeEEEeCCHHHHHHHHHHhhhc-----Cc------------cccccce
Confidence 446889999999999998876542 145799999999999888876321 11 0111223
Q ss_pred EeChHHHHHHHhhCCC--CCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCC
Q 001046 618 YMTDGMLLREILIDDN--LSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSAT 677 (1176)
Q Consensus 618 ~~T~g~Llr~l~~~~~--L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSAT 677 (1176)
+.|-..++ +.... ...+++||||||- .+....+..++.. .+..++|++.-+
T Consensus 217 V~T~dsfL---~~~~~~~~~~~d~liiDE~s--m~~~~~l~~l~~~----~~~~~vilvGD~ 269 (446)
T 3vkw_A 217 VRTVDSFL---MNYGKGARCQFKRLFIDEGL--MLHTGCVNFLVEM----SLCDIAYVYGDT 269 (446)
T ss_dssp EEEHHHHH---HTTTSSCCCCCSEEEEETGG--GSCHHHHHHHHHH----TTCSEEEEEECT
T ss_pred EEEeHHhh---cCCCCCCCCcCCEEEEeCcc--cCCHHHHHHHHHh----CCCCEEEEecCc
Confidence 55654433 22222 2348999999996 4555555444432 223566666544
No 176
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.24 E-value=0.019 Score=64.59 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT 574 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~ 574 (1176)
++.+++.||||+|||+.+..+........+..++++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 689999999999999877655444320233345443
No 177
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.22 E-value=0.035 Score=59.53 Aligned_cols=68 Identities=13% Similarity=0.210 Sum_probs=56.9
Q ss_pred CCCCEEEEEEEE----EeeceeEEEeCC-CCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEeC----cEeEEEE
Q 001046 222 ELYQVYKGRVSR----VVDTGCFVQLND-FRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVSG----QKLSLSM 292 (1176)
Q Consensus 222 ~~g~~~~g~V~~----i~~~G~fV~l~~-~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id~----~ki~Ls~ 292 (1176)
..|+++.|+|.+ +.+..+||+|+. ..+.+|+++.+|+. |.+.|++||.|+|.|.+++. ..|.||.
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpqIiLSR 79 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITLSR 79 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEEES
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCEEEEEe
Confidence 479999999999 888899999962 11369999999874 57899999999999999983 4788888
Q ss_pred eec
Q 001046 293 RDV 295 (1176)
Q Consensus 293 k~~ 295 (1176)
...
T Consensus 80 t~p 82 (251)
T 2asb_A 80 THP 82 (251)
T ss_dssp SCH
T ss_pred ccH
Confidence 764
No 178
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.14 E-value=0.072 Score=59.44 Aligned_cols=125 Identities=22% Similarity=0.238 Sum_probs=65.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEE--eccHHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCce
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGC--TQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 615 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv--~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t~ 615 (1176)
.++++.++|++|+||||.+........ ..+++|++ .-+++..+......+.+..+..+ +. ... .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~-~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~---~~----~~~--~---- 162 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV---LE----VMD--G---- 162 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH-HTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE---EE----CCT--T----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEecCCcccHhHHHHHHHhcccCCeEE---EE----cCC--C----
Confidence 467888999999999988776654432 23455544 33555555443333444444321 00 000 0
Q ss_pred EEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCCC
Q 001046 616 IKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLD 679 (1176)
Q Consensus 616 I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl~ 679 (1176)
..|..+++..+......+|++|||||.-.-+.+...+..+........|+.-++++.|+..
T Consensus 163 ---~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~ 223 (295)
T 1ls1_A 163 ---ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG 223 (295)
T ss_dssp ---CCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred ---CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc
Confidence 1333344433322223679999999995333433223222222222356666666777643
No 179
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.08 E-value=0.032 Score=59.26 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=20.4
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.++.+++.||+|+|||+.+-.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999887665543
No 180
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.96 E-value=0.062 Score=54.35 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
...++++||+|+|||+.+-.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999887665544
No 181
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.94 E-value=0.091 Score=59.13 Aligned_cols=32 Identities=19% Similarity=0.435 Sum_probs=25.0
Q ss_pred HHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 531 ELIQAVHDNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 531 ~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
++..++..++.++|.|+.|+|||+.+-.++..
T Consensus 23 ~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 23 KLEESLENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 34444555789999999999999988877654
No 182
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.90 E-value=0.041 Score=62.40 Aligned_cols=124 Identities=18% Similarity=0.263 Sum_probs=64.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEE-e-ccHHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCce
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGC-T-QPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 615 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv-~-~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t~ 615 (1176)
.+.++.++||+||||||.+-....... ..+++|++ - -..|..+.+....++...|..+ . +... .
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~-~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~------v--~q~~-~---- 193 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLK-NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKV------I--KHSY-G---- 193 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEE------E--CCCT-T----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCEEEEEeecccccchHHHHHHHHHHcCceE------E--eccc-c----
Confidence 467999999999999998776654432 23455533 2 3445555555555555554321 1 0000 0
Q ss_pred EEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHH-hhCCCccEEEEcCCCC
Q 001046 616 IKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLV-KRRPDLRLIVTSATLD 679 (1176)
Q Consensus 616 I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~-~~r~~~kvIlmSATl~ 679 (1176)
..+.......+......+++++++|.+....... .++..|..+. ...|+..++++.||..
T Consensus 194 ---~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~-~l~~eL~~i~ral~~de~llvLDa~t~ 254 (328)
T 3e70_C 194 ---ADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNR-NLMDEMKKIARVTKPNLVIFVGDALAG 254 (328)
T ss_dssp ---CCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTT-CHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred ---CCHHHHHHHHHHHHHhccchhhHHhhccchhHHH-HHHHHHHHHHHHhcCCCCEEEEecHHH
Confidence 0111111111111112457889999987322222 2333333332 2457888888888863
No 183
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.86 E-value=0.027 Score=58.67 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=31.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPR 577 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~Pr 577 (1176)
.++..++.|+.||||||-+.+.+...... +.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccc
Confidence 47889999999999999999988776443 4678887776
No 184
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.80 E-value=0.1 Score=58.72 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEec
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQ 575 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~ 575 (1176)
++.+++.||+|+|||+.+-.+.... ...+..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~-~~~~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA-KKRGYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-HHCCCEEEEEE
Confidence 4689999999999998876655443 22234555554
No 185
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.77 E-value=0.04 Score=60.63 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=20.3
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.....+++.||+|+|||+.+-.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 35678999999999999877655433
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.76 E-value=0.085 Score=58.40 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=19.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..+.+++.||+|+|||+.+-.+..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3678999999999999887655443
No 187
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.60 E-value=0.063 Score=59.65 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=28.8
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT 574 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~ 574 (1176)
+..|..++|.|++|+||||.+.+++.......+..|++.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 467899999999999999998887766433333356544
No 188
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.60 E-value=0.11 Score=61.63 Aligned_cols=124 Identities=16% Similarity=0.222 Sum_probs=63.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe--ccHHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCce
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT--QPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 615 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~--~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t~ 615 (1176)
.+.++.|+|++||||||.+-.+.... ...+|+|++. .+.|..+.......+...+ ++|..... ..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll-~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~------I~vV~Q~~-----~~- 358 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF-EQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN------IPVIAQHT-----GA- 358 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEECCCTTCHHHHHHHHHHHHHHT------CCEECCST-----TC-
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh-hhcCCeEEEecCcccchhhHHHHHHHHHhcC------ceEEeccc-----Cc-
Confidence 36689999999999999887765432 2335666663 3445544333222222222 23321110 00
Q ss_pred EEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-------hCCCccEEEEcCCCC
Q 001046 616 IKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK-------RRPDLRLIVTSATLD 679 (1176)
Q Consensus 616 I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~-------~r~~~kvIlmSATl~ 679 (1176)
-+.......+......++++||||-+- |......++..|+.+.. ..|+-.+++++||..
T Consensus 359 ----~p~~tV~e~l~~a~~~~~DvVLIDTaG-rl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG 424 (503)
T 2yhs_A 359 ----DSASVIFDAIQAAKARNIDVLIADTAG-RLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG 424 (503)
T ss_dssp ----CHHHHHHHHHHHHHHTTCSEEEECCCC-SCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT
T ss_pred ----CHHHHHHHHHHHHHhcCCCEEEEeCCC-ccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc
Confidence 011111111111112568899999997 44333334444443322 125556788999884
No 189
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.59 E-value=0.036 Score=63.43 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+..++|.||+|+|||+.+-.++-.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999987765543
No 190
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.58 E-value=0.098 Score=59.39 Aligned_cols=43 Identities=21% Similarity=0.461 Sum_probs=26.7
Q ss_pred CCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCC
Q 001046 634 LSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATL 678 (1176)
Q Consensus 634 L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl 678 (1176)
..++.+|||||+|. ++.+..-.+++.+....++..+|+.|..+
T Consensus 132 ~~~~~vlilDE~~~--L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS--LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS--SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc--cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 45788999999995 55555545555444444456666666554
No 191
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.55 E-value=0.098 Score=59.69 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=22.2
Q ss_pred HHHHHHcCC---eEEEEcCCCCcHHHHHHHHHHH
Q 001046 532 LIQAVHDNQ---VLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 532 ii~ai~~~~---~vIv~apTGSGKTt~~~~~lle 562 (1176)
+..++..++ .+++.||+|+|||+.+-.+...
T Consensus 28 L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 28 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp HHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344444554 5899999999999888665544
No 192
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.45 E-value=0.096 Score=63.20 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
.+.++++||+|+|||+.+-.+..+.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999998877665543
No 193
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.34 E-value=0.1 Score=60.54 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+.+++.||+|+|||+.+-.+..+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999877665433
No 194
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.22 E-value=0.14 Score=57.14 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=22.0
Q ss_pred HHHHHHcCC--eEEEEcCCCCcHHHHHHHHHHH
Q 001046 532 LIQAVHDNQ--VLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 532 ii~ai~~~~--~vIv~apTGSGKTt~~~~~lle 562 (1176)
+...+..++ .+++.||+|+|||+.+-.+...
T Consensus 37 l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 37 LKHYVKTGSMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp HHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 334444554 6999999999999877655443
No 195
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.15 E-value=0.098 Score=57.26 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..+++.||+|+|||+.+-.+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999877655444
No 196
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.08 E-value=0.12 Score=56.25 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=19.5
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
...+..+++.||||+|||+.+-.+.
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHH
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHH
Confidence 3456789999999999997665443
No 197
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.97 E-value=0.23 Score=55.71 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=20.0
Q ss_pred HHHHHHcC---CeEEEEcCCCCcHHHHHHHHHH
Q 001046 532 LIQAVHDN---QVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 532 ii~ai~~~---~~vIv~apTGSGKTt~~~~~ll 561 (1176)
+..++..+ ..+++.||+|+|||+.+-.+..
T Consensus 38 l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 38 FKSITSKGKIPHIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp HHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHH
Confidence 33444444 3567778899999988766543
No 198
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=93.96 E-value=0.099 Score=48.56 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=43.9
Q ss_pred CCCCEEEEEEEEE---eeceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEe
Q 001046 222 ELYQVYKGRVSRV---VDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVS 284 (1176)
Q Consensus 222 ~~g~~~~g~V~~i---~~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id 284 (1176)
+.++.++|+|+.. +.|| ||.-++ .+.++++|+|++.+..+ ....+.+||.|...|..+.
T Consensus 12 ~~~~~~~G~Vk~fn~~kGfG-FI~~~~-gg~dvfvH~s~l~~~~~--~~~~l~~Ge~V~g~V~~i~ 73 (101)
T 2bh8_A 12 LQSGKMTGIVKWFNADKGFG-FITPDD-GSKDVFVHFSAGSSGAA--VRGNPQQGDRVEGKIKSIT 73 (101)
T ss_dssp ----CEEEEEEEEEGGGTEE-EEEESS-SSCEEEEECCCSCSSSC--CCCCCCTTCEEEEEEEECC
T ss_pred cccccceeEEEEEECCCCCE-EEEeCC-CCcEEEEEEEEEecCCc--cccCCCCCCEEEEEEEEeC
Confidence 3567789999987 7899 887664 25799999999987654 1234788999999998875
No 199
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.95 E-value=0.042 Score=68.60 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcc---cCCCEEEEeccHHHHHHHHHHHHHHHhCC
Q 001046 525 IYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGY---TTRGKIGCTQPRRVAAMSVAKRVAEEFGC 594 (1176)
Q Consensus 525 i~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~---~~~~~Ilv~~PrR~lA~qva~rva~e~g~ 594 (1176)
+.+.|.+++.. .+..++|.|..|||||+++..-+..... ....+|+++..|+.+|.++..|+...++.
T Consensus 3 L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 45678887764 3678999999999999888765543221 13457999999999999999999887654
No 200
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.91 E-value=0.18 Score=56.20 Aligned_cols=122 Identities=20% Similarity=0.214 Sum_probs=67.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEE--eccHHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCceE
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGC--TQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVI 616 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv--~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t~I 616 (1176)
+.+++++|++|+||||.+..+...... .++++++ .-++|.++..+.+.++...|..+- . .. ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~---~----~~--~~----- 162 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVY---G----EP--GE----- 162 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEE---C----CT--TC-----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEE---e----cC--CC-----
Confidence 568888999999999987776654322 3445443 446666666554445554443320 0 00 00
Q ss_pred EEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCC--chhHHHHHHHHHH-hhCCCccEEEEcCCC
Q 001046 617 KYMTDGMLLREILIDDNLSQYSVIMLDEAHERTI--HTDVLFGLLKQLV-KRRPDLRLIVTSATL 678 (1176)
Q Consensus 617 ~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~--~~d~ll~llk~~~-~~r~~~kvIlmSATl 678 (1176)
..+..++...+....-.+|++||||-+- +.. ..+.++..++.+. ...++.-++++.|+.
T Consensus 163 --~~p~~~~~~~l~~~~~~~~D~ViIDTpg-~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 163 --KDVVGIAKRGVEKFLSEKMEIIIVDTAG-RHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECCC-SCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEeCCC-CcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 1233333322221112578999999987 333 3344544444332 235677777777764
No 201
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.88 E-value=0.047 Score=72.91 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=55.0
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc-----CCCEEEEeccHHHHHHHHHHHHHHHhC
Q 001046 523 LPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT-----TRGKIGCTQPRRVAAMSVAKRVAEEFG 593 (1176)
Q Consensus 523 LPi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~-----~~~~Ilv~~PrR~lA~qva~rva~e~g 593 (1176)
....+-|.++|..- +++++|.|..|||||+++..-++..... ...+|+|+.+|+.+|..+..|+...++
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 45667788887653 7899999999999999988877665443 224799999999999999999987654
No 202
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.79 E-value=0.3 Score=57.16 Aligned_cols=123 Identities=24% Similarity=0.276 Sum_probs=65.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEE--eccHHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCce
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGC--TQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 615 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv--~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t~ 615 (1176)
.+++++++|++|+||||.+..+..... ..+++|++ .-+.+.++......++...|.++ +... . .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~-~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v-----~~~~--~----~-- 162 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV-----LEVM--D----G-- 162 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE-----EECC--T----T--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEeeccccCchhHHHHHHhcccCCccE-----EecC--C----C--
Confidence 356788899999999998777665432 23445543 45677777654444455444332 1000 0 0
Q ss_pred EEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHH-hhCCCccEEEEcCCC
Q 001046 616 IKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLV-KRRPDLRLIVTSATL 678 (1176)
Q Consensus 616 I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~-~~r~~~kvIlmSATl 678 (1176)
..+..++...+......+|++||||=+-....+. .++..+..+. ...|+.-++++.|+.
T Consensus 163 ---~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~-~l~~el~~i~~~~~pd~vlLVvDa~t 222 (425)
T 2ffh_A 163 ---ESPESIRRRVEEKARLEARDLILVDTAGRLQIDE-PLMGELARLKEVLGPDEVLLVLDAMT 222 (425)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCH-HHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ---CCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccH-HHHHHHHHhhhccCCceEEEEEeccc
Confidence 1233333322221112578999999886322222 2333333322 235666666666653
No 203
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.62 E-value=0.14 Score=57.68 Aligned_cols=24 Identities=21% Similarity=0.363 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+.+++.||+|+|||+.+-.+..+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 368999999999999877665544
No 204
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.61 E-value=0.074 Score=67.00 Aligned_cols=69 Identities=23% Similarity=0.232 Sum_probs=53.2
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhccc---CCCEEEEeccHHHHHHHHHHHHHHHhCC
Q 001046 524 PIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT---TRGKIGCTQPRRVAAMSVAKRVAEEFGC 594 (1176)
Q Consensus 524 Pi~~~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~---~~~~Ilv~~PrR~lA~qva~rva~e~g~ 594 (1176)
.+.+.|.+++.. .+..++|.|..|||||+++..-+...... ...+|+++..|+.+|.++.+|+...++.
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~ 82 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGG 82 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGG
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcc
Confidence 356778888765 35678899999999998887665543221 2357999999999999999999887654
No 205
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.54 E-value=0.11 Score=59.43 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
.+.+++.||+|+|||+.+-.+..+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4579999999999998877655543
No 206
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.52 E-value=0.081 Score=57.21 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=19.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..+.+++.||+|+|||+.+-.+..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999877665443
No 207
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.47 E-value=0.33 Score=54.61 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
+.++|.||.|+|||+.+-.++.+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 789999999999999888776553
No 208
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.47 E-value=0.2 Score=56.44 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+.+++.||+|+|||+.+-.+..+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999877665444
No 209
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.43 E-value=0.23 Score=55.59 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=20.5
Q ss_pred HHHHHcCC--eEEEEcCCCCcHHHHHHHHH
Q 001046 533 IQAVHDNQ--VLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 533 i~ai~~~~--~vIv~apTGSGKTt~~~~~l 560 (1176)
..++.+++ ..++.||.|+|||+.+..+.
T Consensus 10 ~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la 39 (305)
T 2gno_A 10 KRIIEKSEGISILINGEDLSYPREVSLELP 39 (305)
T ss_dssp HHHHHTCSSEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHHCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 33455554 78999999999998766543
No 210
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.33 E-value=0.067 Score=63.48 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=30.4
Q ss_pred HHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe
Q 001046 535 AVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT 574 (1176)
Q Consensus 535 ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~ 574 (1176)
-+..|..++|.|++|+||||.+.+++.......+..|++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~ 238 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF 238 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 3567899999999999999999888877544334456654
No 211
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.31 E-value=0.33 Score=54.19 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
...+++.||+|+|||+.+-.+...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999877665443
No 212
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.18 E-value=0.29 Score=55.11 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=17.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~l 560 (1176)
..+++.||+|+|||+.+-.+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 579999999999998776553
No 213
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.17 E-value=0.094 Score=59.36 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=22.5
Q ss_pred HHHHHHHcC--CeEEEEcCCCCcHHHHHHHHHHH
Q 001046 531 ELIQAVHDN--QVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 531 ~ii~ai~~~--~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+..++..+ ..+++.||+|+|||+.+-.+.-.
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 344445555 45999999999999877655443
No 214
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.16 E-value=0.23 Score=56.27 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=23.4
Q ss_pred HHHHHHcCCe--EEEEcCCCCcHHHHHHHHHHH
Q 001046 532 LIQAVHDNQV--LVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 532 ii~ai~~~~~--vIv~apTGSGKTt~~~~~lle 562 (1176)
+...+..++. +++.||+|+||||.+-.+.-.
T Consensus 37 L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 37 VRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3445666766 999999999999887765543
No 215
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.16 E-value=0.19 Score=56.01 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=20.9
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..++.+++.||+|||||+.+-....+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 45678999999999999887665544
No 216
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.09 E-value=0.087 Score=60.99 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=19.2
Q ss_pred CCeEEE--EcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVV--IGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv--~apTGSGKTt~~~~~lle 562 (1176)
...++| +||+|+|||+.+-.++-.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 457888 899999999987766544
No 217
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.01 E-value=0.37 Score=54.31 Aligned_cols=127 Identities=19% Similarity=0.274 Sum_probs=62.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe--ccHHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCce
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT--QPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 615 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~--~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t~ 615 (1176)
.++++.++|++|+||||.+........ ..+++|+++ -++|..+......+.+ ......+++.. ... ...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~-~~g~kVllid~D~~r~~a~~ql~~~~~---~~~~~~l~vip-~~~-~~~--- 174 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA-ELGYKVLIAAADTFRAGATQQLEEWIK---TRLNNKVDLVK-ANK-LNA--- 174 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCCSCHHHHHHHHHHHT---TTSCTTEEEEC-CSS-TTC---
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCcchhHHHHHHHHHh---ccccCCceEEe-CCC-CCC---
Confidence 456889999999999988776654432 235565543 3555554332222211 00011122210 110 000
Q ss_pred EEEeChHH-HHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHH---Hh----hCCCccEEEEcCCCC
Q 001046 616 IKYMTDGM-LLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQL---VK----RRPDLRLIVTSATLD 679 (1176)
Q Consensus 616 I~~~T~g~-Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~---~~----~r~~~kvIlmSATl~ 679 (1176)
.+.. +.+.+. .....+|++||||-+- |....+.++..+..+ +. ..++.-++++.|+..
T Consensus 175 ----~p~~~~~~~l~-~~~~~~yD~VIIDTpg-~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~ 240 (320)
T 1zu4_A 175 ----DPASVVFDAIK-KAKEQNYDLLLIDTAG-RLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG 240 (320)
T ss_dssp ----CHHHHHHHHHH-HHHHTTCSEEEEECCC-CGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT
T ss_pred ----CHHHHHHHHHH-HHHhcCCCEEEEcCCC-cccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc
Confidence 1221 222221 1123679999999987 444444444444332 22 235555777878754
No 218
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.95 E-value=0.54 Score=55.41 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=18.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
.+.+++.||+|+||||.+-.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999987765443
No 219
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.92 E-value=0.3 Score=54.62 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=19.1
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
..+..++|.||||+|||+.+-.+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~ 46 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALH 46 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHH
Confidence 456789999999999997665443
No 220
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.86 E-value=0.32 Score=57.21 Aligned_cols=122 Identities=23% Similarity=0.256 Sum_probs=66.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcccCCCEE--EEeccHHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCceEE
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAEAGYTTRGKI--GCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIK 617 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle~~~~~~~~I--lv~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t~I~ 617 (1176)
++++++|++|+||||.+..++.......+.++ +-+-|.|.++......++...|..+-. ... .
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~-------~~~----~---- 165 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP-------SDV----G---- 165 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECC-------CCS----S----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEe-------CCC----C----
Confidence 47888999999999988777655432213344 345577777766555455554433210 000 0
Q ss_pred EeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-hCCCccEEEEcCCC
Q 001046 618 YMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK-RRPDLRLIVTSATL 678 (1176)
Q Consensus 618 ~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~-~r~~~kvIlmSATl 678 (1176)
.++..++...+......+|++||||-+- +....+.+...+..+.. ..|+.-++++.|+.
T Consensus 166 -~dp~~i~~~~l~~~~~~~~D~VIIDTpG-~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~ 225 (433)
T 2xxa_A 166 -QKPVDIVNAALKEAKLKFYDVLLVDTAG-RLHVDEAMMDEIKQVHASINPVETLFVVDAMT 225 (433)
T ss_dssp -SCHHHHHHHHHHHHHHTTCSEEEEECCC-CCTTCHHHHHHHHHHHHHSCCSEEEEEEETTB
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEECCC-cccccHHHHHHHHHHHHhhcCcceeEEeecch
Confidence 1333333322221112579999999985 33323334444444332 35666666666664
No 221
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.57 E-value=0.39 Score=57.46 Aligned_cols=121 Identities=20% Similarity=0.229 Sum_probs=64.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcccCCCEE--EEeccHHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCceEE
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAEAGYTTRGKI--GCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIK 617 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle~~~~~~~~I--lv~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t~I~ 617 (1176)
.+++++|++|+||||.+..++..... .+.++ +..-|.|.++....+......+.++ ++ . .+..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~-~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v---~~--~----~~~~----- 166 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQR-KGWKTCLICADTFRAGAFDQLKQNATKARIPF---YG--S----YTEM----- 166 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE---EE--C----CCCS-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEeccccchhHHHHHHHHhhccCceE---Ec--c----CCCC-----
Confidence 37888999999999998877655432 23344 3344667766655554444444331 11 0 0000
Q ss_pred EeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHH-hhCCCccEEEEcCCC
Q 001046 618 YMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLV-KRRPDLRLIVTSATL 678 (1176)
Q Consensus 618 ~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~-~~r~~~kvIlmSATl 678 (1176)
.+.-++...+......+++++|||-+-......++. ..+..+. ...++.-++++.|+.
T Consensus 167 --dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~-~el~~~~~~i~pd~vllVvDa~~ 225 (504)
T 2j37_W 167 --DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLF-EEMLQVANAIQPDNIVYVMDASI 225 (504)
T ss_dssp --CHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHH-HHHHHHHHHHCCSEEEEEEETTC
T ss_pred --CHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHH-HHHHHHHhhhcCceEEEEEeccc
Confidence 111121111111112578999999987433333333 2232222 236777788888875
No 222
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.54 E-value=0.14 Score=58.72 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=20.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..+.+++.||+|+|||+.+-.+..+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999887765444
No 223
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.39 E-value=0.39 Score=53.31 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
..+++.||+|+|||+.+-....+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999998766554443
No 224
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.36 E-value=1.2 Score=54.81 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=25.8
Q ss_pred HHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 530 KELIQAVHDNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 530 ~~ii~ai~~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
..+-.++..+..+++.||+||||||.+-.+.-
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhccccccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 44555678899999999999999988766544
No 225
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.29 E-value=0.66 Score=51.77 Aligned_cols=52 Identities=23% Similarity=0.257 Sum_probs=32.7
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe-c-cHHHHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT-Q-PRRVAAMSVAKRVA 589 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~-~-PrR~lA~qva~rva 589 (1176)
..+.++.++||+||||||.+-....... ..+++|.+. . ..|..|.+....++
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~g~V~l~g~d~~r~~a~~ql~~~~ 151 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTFRAAASDQLEIWA 151 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeecccchhHHHHHHHHH
Confidence 4577899999999999998877654432 235666543 2 34555544333333
No 226
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.24 E-value=0.26 Score=57.11 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=18.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+-+++.||+|||||+.+-....+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 467999999999999765554443
No 227
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.22 E-value=0.36 Score=53.95 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=25.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEE
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGC 573 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv 573 (1176)
.+.++.++||+||||||.+-....... ..+++|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-~~~g~V~l 135 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGKKVMF 135 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEE
Confidence 467999999999999998877654432 23455544
No 228
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.20 E-value=0.11 Score=54.27 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=29.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPR 577 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~Pr 577 (1176)
....++|.+.+|.||||++.-..+.. ...+.+|+++|-.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA-~g~G~rV~~vQF~ 65 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARA-VGHGKNVGVVQFI 65 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHH-HHTTCCEEEEESS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEEee
Confidence 34578888999999999988877775 3556688888643
No 229
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.98 E-value=0.72 Score=52.74 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=30.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe-c-cHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT-Q-PRRVAAMSVA 585 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~-~-PrR~lA~qva 585 (1176)
.+.++.++||+||||||.+-....... ..+++|++. . ..|..|....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~G~V~l~g~D~~r~~a~eql 204 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTFRAAASDQL 204 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCSCHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc-ccCCEEEEecccccccchhHHH
Confidence 467899999999999998877654432 235566543 3 3355554333
No 230
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.96 E-value=0.27 Score=54.55 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=18.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..+++.||+|+|||+.+-.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999877654443
No 231
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.75 E-value=0.2 Score=59.13 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=31.8
Q ss_pred HHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe
Q 001046 532 LIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT 574 (1176)
Q Consensus 532 ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~ 574 (1176)
++.-+..|..++|.|++|+|||+.+.+++.......+..++++
T Consensus 193 ~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~ 235 (444)
T 2q6t_A 193 LIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIY 235 (444)
T ss_dssp HHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred hcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 3333566889999999999999999888877544334456654
No 232
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.69 E-value=0.23 Score=58.75 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=20.6
Q ss_pred HHHHcCC--eEEEEcCCCCcHHHHHHHHHH
Q 001046 534 QAVHDNQ--VLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 534 ~ai~~~~--~vIv~apTGSGKTt~~~~~ll 561 (1176)
.++..++ .+++.||+|+||||.+-.+.-
T Consensus 43 ~~i~~~~~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 43 RAIEAGHLHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp HHHHHTCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHcCCCcEEEEECCCCCcHHHHHHHHHH
Confidence 3444554 599999999999987765443
No 233
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.63 E-value=0.31 Score=57.33 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=19.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.-+-+++.||+|||||+.+-....+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 4578999999999999765544433
No 234
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.61 E-value=0.28 Score=57.89 Aligned_cols=24 Identities=21% Similarity=0.363 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+.+++.||+|+|||+.+-.+..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999887665444
No 235
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.43 E-value=0.4 Score=53.17 Aligned_cols=31 Identities=35% Similarity=0.458 Sum_probs=21.6
Q ss_pred HHHHHHcCC--eEEEEcCCCCcHHHHHHHHHHH
Q 001046 532 LIQAVHDNQ--VLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 532 ii~ai~~~~--~vIv~apTGSGKTt~~~~~lle 562 (1176)
+...+..++ .+++.||+|+|||+.+-.+...
T Consensus 33 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 33 LQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp HHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 344454443 4999999999999877665443
No 236
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.95 E-value=0.088 Score=61.97 Aligned_cols=119 Identities=21% Similarity=0.257 Sum_probs=59.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEE--eccHHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCceEE
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGC--TQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIK 617 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv--~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t~I~ 617 (1176)
.+++++|++|+||||.+..+...... .+.++++ +-|.|..+....+.++...|..+-. .. ....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~-~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~-----~~---~~~~----- 165 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK-RGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYG-----DE---TRTK----- 165 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH-HHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEEC-----CS---SSCC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEeccccCchHHHHHHHhhhccCcceEe-----cC---CCCC-----
Confidence 47899999999999988776654321 2334443 3455555444333333333322100 00 0000
Q ss_pred EeCh-HHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHh-hCCCccEEEEcCCC
Q 001046 618 YMTD-GMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVK-RRPDLRLIVTSATL 678 (1176)
Q Consensus 618 ~~T~-g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~-~r~~~kvIlmSATl 678 (1176)
.+ .++.+.+. . +.++++||||.+-.... ...++..+..+.. ..|+.-++++.||.
T Consensus 166 --dp~~i~~~~l~-~--~~~~D~vIIDT~G~~~~-~~~l~~~l~~i~~~~~~d~vllVvda~~ 222 (432)
T 2v3c_C 166 --SPVDIVKEGME-K--FKKADVLIIDTAGRHKE-EKGLLEEMKQIKEITNPDEIILVIDGTI 222 (432)
T ss_dssp --SSSTTHHHHHH-T--TSSCSEEEEECCCSCSS-HHHHHHHHHHTTSSSCCSEEEEEEEGGG
T ss_pred --CHHHHHHHHHH-H--hhCCCEEEEcCCCCccc-cHHHHHHHHHHHHHhcCcceeEEeeccc
Confidence 11 12222222 2 27899999999984332 2233444433322 24565566666653
No 237
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.78 E-value=0.27 Score=57.63 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+-+++.||+|||||+.+-....+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 467999999999999766554444
No 238
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=90.69 E-value=0.56 Score=54.52 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=35.3
Q ss_pred eChHHHHHHHhhCCCCCCC--ceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCC
Q 001046 619 MTDGMLLREILIDDNLSQY--SVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATL 678 (1176)
Q Consensus 619 ~T~g~Llr~l~~~~~L~~~--s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl 678 (1176)
.+.|...+..+....+.+. .+||+||.. -+++......++..+.....+.++|+.|.-+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt-~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~ 356 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVD-AGIGGAAAIAVAEQLSRLADTRQVLVVTHLA 356 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTT-TTCCHHHHHHHHHHHHHHTTTSEEEEECSCH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 4667766554433333334 899999986 4555554444444433333477888888763
No 239
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.63 E-value=0.76 Score=58.02 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=15.9
Q ss_pred eEEEEcCCCCcHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~ 559 (1176)
.+++.||||+|||+.+-.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~al 541 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARAL 541 (758)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6999999999999766543
No 240
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.55 E-value=0.16 Score=55.66 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=26.6
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEE
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGC 573 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv 573 (1176)
+..+..++|+|||||||||.+-..+-.......+.|++
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~ 59 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT 59 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE
Confidence 56788999999999999998776554322221456644
No 241
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.16 E-value=0.22 Score=52.46 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 528 LKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 528 ~q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
-+..+++.+..|..+.|+||+||||||.+-..+-
T Consensus 11 g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 11 GQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHH
T ss_pred hHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3556788889999999999999999998776543
No 242
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.94 E-value=0.42 Score=56.04 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=18.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+-+++.||+|||||+.+-....+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 478999999999999776554444
No 243
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.62 E-value=0.54 Score=55.02 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+-+++.||+|||||+.+-....+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999776654444
No 244
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.59 E-value=0.55 Score=54.69 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=18.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+-+++.||+|||||+.+-....+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 467999999999999765544433
No 245
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.47 E-value=0.2 Score=55.65 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=17.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+++.||+|+|||+.+-.+...
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHH
Confidence 5999999999999877655433
No 246
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=89.42 E-value=0.44 Score=45.12 Aligned_cols=62 Identities=8% Similarity=0.106 Sum_probs=47.6
Q ss_pred hhHHHHHHHHhhhCCCChhHHHHHHHHHhhCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001046 18 LVSKVCSELETHLGFGDKVLAEFITELGRNCETVDEFDSKLKENGAEMPDYFVRTLLTIIHA 79 (1176)
Q Consensus 18 lvskv~~el~nhlgi~dk~laefii~l~~~~~~~~~F~~~l~~~ga~~~~~~~~~l~~li~~ 79 (1176)
|---|+..+...||+.|.+|.+||++.-.+..+.......|...=-+=...|+.+|+|++.-
T Consensus 47 lkPWI~kKI~E~LG~eEd~LVdfI~~~L~~~~~pk~l~~~L~~~LDeeA~~FV~kLWrlLIf 108 (119)
T 3v53_A 47 IRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIY 108 (119)
T ss_dssp HHHHHHHHHHHHTC---CHHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34457788899999999999999999999999988888877763223367899999998753
No 247
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.27 E-value=0.26 Score=56.46 Aligned_cols=37 Identities=30% Similarity=0.325 Sum_probs=25.2
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEE
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGC 573 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv 573 (1176)
..+..++|+|||||||||.+-..+-......++.|+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t 157 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT 157 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE
Confidence 4566899999999999998776554332222455543
No 248
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=89.27 E-value=0.21 Score=51.01 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=20.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.++.++|+||+||||||.+-..+-.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999988775543
No 249
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.08 E-value=0.27 Score=56.16 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=29.4
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEecc
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQP 576 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~P 576 (1176)
..+..++|.||+||||||.+.+++.... ..+++++++..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~-~~gg~VlyId~ 97 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQ-KMGGVAAFIDA 97 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEES
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEec
Confidence 3478999999999999999888877643 23556766543
No 250
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.99 E-value=1.3 Score=50.68 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=28.6
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEec
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQ 575 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~ 575 (1176)
..+..++|.|++|+|||+.+.+++..... .+++++++.
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~-~g~~vlyi~ 109 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQK-AGGTCAFID 109 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHH-CCCeEEEEE
Confidence 35789999999999999999888876533 344565553
No 251
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=88.87 E-value=0.54 Score=55.85 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=18.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+.++++||+|+|||+.+-...-+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999877655443
No 252
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.79 E-value=0.23 Score=51.95 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=21.7
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..++.++|+||+|+||||.+-.++-.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 47899999999999999987765543
No 253
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.79 E-value=0.7 Score=55.20 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=19.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
....+++.||+|+|||+.+-.+..
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHH
Confidence 456799999999999987765533
No 254
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.76 E-value=0.51 Score=64.77 Aligned_cols=90 Identities=20% Similarity=0.193 Sum_probs=52.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCceEE
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIK 617 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t~I~ 617 (1176)
.++++++.||+|+|||+.+.+++.+.. ..+.+++++..--.+.... +..+|..+.... +.. +.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~-~~G~~v~Fi~~e~~~~~l~----a~~~G~dl~~l~---v~~-----~~---- 1488 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDPIY----ARKLGVDIDNLL---CSQ-----PD---- 1488 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTTSCCCHHH----HHHTTCCTTTCE---EEC-----CS----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEEcccccCHHH----HHHcCCCchhce---eec-----CC----
Confidence 488999999999999999999888764 3456777766442211111 234455544311 100 00
Q ss_pred EeChHHHHHHHhhCCCCCCCceEEEcCCC
Q 001046 618 YMTDGMLLREILIDDNLSQYSVIMLDEAH 646 (1176)
Q Consensus 618 ~~T~g~Llr~l~~~~~L~~~s~IIiDEaH 646 (1176)
+...+++.+...-.-..+++|||||+.
T Consensus 1489 --~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1489 --TGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp --SHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred --hHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 223444433321111568999999984
No 255
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.60 E-value=0.25 Score=56.98 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=27.5
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT 574 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~ 574 (1176)
+..+..++|+|||||||||.+-..+-.......+.|++.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 171 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEe
Confidence 457889999999999999988776544322224666544
No 256
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=88.49 E-value=0.23 Score=51.35 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=21.0
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
..|..+.|+||+||||||.+-...-
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHh
Confidence 4688999999999999998776543
No 257
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.26 E-value=0.28 Score=48.10 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCcHHHHHH
Q 001046 529 KKELIQAVHDNQVLVVIGETGSGKTTQVT 557 (1176)
Q Consensus 529 q~~ii~ai~~~~~vIv~apTGSGKTt~~~ 557 (1176)
+..+..+...+..+++.||+|+|||+.+-
T Consensus 17 ~~~~~~~~~~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 17 NREVEAAAKRTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp HHHHHHHHTCSSCEEEEEETTCCHHHHHG
T ss_pred HHHHHHHhCCCCcEEEECCCCccHHHHHH
Confidence 33344445677889999999999997654
No 258
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.23 E-value=0.75 Score=53.73 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=29.1
Q ss_pred HHHHHHHH--HcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe
Q 001046 529 KKELIQAV--HDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT 574 (1176)
Q Consensus 529 q~~ii~ai--~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~ 574 (1176)
+..++..+ ..+..++|+|||||||||.+-..+-.. ....+.|++.
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l-~~~~g~I~~~ 201 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL-NSSERNILTV 201 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH-CCTTSCEEEE
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEEe
Confidence 33444443 346689999999999999887765443 2234556543
No 259
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.07 E-value=0.3 Score=52.08 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=28.6
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT 574 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~ 574 (1176)
..|..++|.|++|+|||+.+.+++.+.....+..++++
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~ 65 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceee
Confidence 35789999999999999999998876544334455544
No 260
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.05 E-value=0.18 Score=63.68 Aligned_cols=54 Identities=11% Similarity=0.030 Sum_probs=31.6
Q ss_pred HHHHhhhCCCChhHHHHHHHHHhhCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhhCC
Q 001046 24 SELETHLGFGDKVLAEFITELGRNCETVDEFDSKLKENGAEMPDYFVRTLLTIIHAILP 82 (1176)
Q Consensus 24 ~el~nhlgi~dk~laefii~l~~~~~~~~~F~~~l~~~ga~~~~~~~~~l~~li~~~~p 82 (1176)
+++-...|-+.=+..-.++.|... +.+...|...|++ ++.+...|.+.+..-.|
T Consensus 14 ~~~A~~~~h~~i~~eHLLlaLl~~----~~~~~iL~~~gvd-~~~l~~~l~~~l~~~~p 67 (758)
T 1r6b_X 14 FARAREHRHEFMTVEHLLLALLSN----PSAREALEACSVD-LVALRQELEAFIEQTTP 67 (758)
T ss_dssp HHHHHHTTBSEECHHHHHHHHTTS----HHHHHHHHHTTCC-HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCCCccHHHHHHHHHcC----cHHHHHHHHcCCC-HHHHHHHHHHHHhccCC
Confidence 334444444444556666666653 3477778888876 45566666666655234
No 261
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.92 E-value=0.28 Score=56.33 Aligned_cols=39 Identities=41% Similarity=0.463 Sum_probs=27.7
Q ss_pred HHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe
Q 001046 535 AVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT 574 (1176)
Q Consensus 535 ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~ 574 (1176)
.+..|..++|+|||||||||.+-..+-.. -...+.|.+-
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~-~~~~g~I~ie 209 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQEI-PFDQRLITIE 209 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTTS-CTTSCEEEEE
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhcC-CCCceEEEEC
Confidence 46789999999999999999877654332 1234455443
No 262
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.67 E-value=0.71 Score=52.34 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=34.9
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRV 588 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rv 588 (1176)
+..+..++|.|++|+|||+.+.+++..... .+..|+++.. -..+.++..|+
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSl-Ems~~ql~~Rl 93 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSL-EMSAEQLALRA 93 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEES-SSCHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeC-CCCHHHHHHHH
Confidence 456889999999999999999888776544 4556766532 12233444443
No 263
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=87.56 E-value=1.5 Score=38.97 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=50.8
Q ss_pred CCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecc-cccccccCCcccccCCCCEEEEEEEEEeCc
Q 001046 220 EPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVS-QIATRRIGNAKDVVKRDQEVYVKVISVSGQ 286 (1176)
Q Consensus 220 ~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhis-els~~~~~~~~~~~~~Gd~V~VkV~~id~~ 286 (1176)
++-.|++.+|+|. +.++-.+|.|.+++|.++++--. ++-.++..+.++.+ +|..|+|+|+.+|.-
T Consensus 29 ~~~~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkkL-VGKtIkVqVIRvD~l 94 (102)
T 1jjg_A 29 DLSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKERL-VGRVIKTRVVRADGL 94 (102)
T ss_dssp CCCSSCEEEEEEE-EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHHH-TTCEEEEEEEEECSS
T ss_pred ccCCCceEeeEEE-EeCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHHh-cCceEEEEEEEeccE
Confidence 5677999999875 57888899999998889887543 45555666665544 699999999999865
No 264
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=87.56 E-value=0.31 Score=51.04 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=21.2
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..+..++|+||+||||||.+-.++-.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 35789999999999999987765543
No 265
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=87.52 E-value=0.29 Score=50.61 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=20.7
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..+..++|+|++||||||++-.+.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~ 27 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIF 27 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999999877643
No 266
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.40 E-value=1.1 Score=56.65 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=18.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
-+-+++.||+|||||+.+-....+
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999877654433
No 267
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=87.36 E-value=0.28 Score=50.99 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=19.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
.++.++|+||+||||||.+-..+-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 578899999999999998876554
No 268
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.05 E-value=0.41 Score=57.50 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=22.0
Q ss_pred HHHHcCCeEEEEcCCCCcHHHHHHHH
Q 001046 534 QAVHDNQVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 534 ~ai~~~~~vIv~apTGSGKTt~~~~~ 559 (1176)
-++..+.+++|+|||||||||.+-..
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL 280 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAI 280 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHH
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHH
Confidence 34678999999999999999987654
No 269
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.04 E-value=0.27 Score=52.45 Aligned_cols=27 Identities=30% Similarity=0.566 Sum_probs=23.0
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+..|..+.|.||+||||||.+-.++..
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 467999999999999999988877643
No 270
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.86 E-value=0.34 Score=50.57 Aligned_cols=35 Identities=26% Similarity=0.171 Sum_probs=26.9
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT 574 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~ 574 (1176)
+..|..++|.|++||||||.+.+++. ..++.++++
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~----~~~~~v~~i 51 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL----LSGKKVAYV 51 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH----HHCSEEEEE
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH----HcCCcEEEE
Confidence 34688999999999999999888877 224455554
No 271
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=86.84 E-value=0.36 Score=50.39 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=20.6
Q ss_pred HHHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 535 AVHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 535 ai~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
.+..|+.+.|+||+||||||.+-..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 46889999999999999999877654
No 272
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=86.81 E-value=0.33 Score=51.30 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=21.0
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
+..|+.+.|+||+||||||.+-..+-
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 46789999999999999998876544
No 273
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=86.63 E-value=0.25 Score=50.58 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.0
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..+..++|+|++||||||.+-...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999999877653
No 274
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.46 E-value=0.45 Score=50.51 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=24.0
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
+..+..++|.||+||||||.+.+++...
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3468899999999999999998887753
No 275
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=86.40 E-value=1.2 Score=45.63 Aligned_cols=124 Identities=13% Similarity=0.219 Sum_probs=76.7
Q ss_pred CCchHHHHHHHHHH--HcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCee
Q 001046 523 LPIYKLKKELIQAV--HDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEV 600 (1176)
Q Consensus 523 LPi~~~q~~ii~ai--~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~v 600 (1176)
+|-..-|..++..+ ...++.+|.|.-|++|+.....-++...-..+..|.++.|+...+..+++.+- . -|..+
T Consensus 33 ~~~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~~----l-~~~t~ 107 (189)
T 2l8b_A 33 VPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDER----L-SGELI 107 (189)
T ss_dssp CCCHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTTT----C-SSCSS
T ss_pred cccCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhcC----c-Cccee
Confidence 34444566677766 45679999999999999886666666555567789999999888776665320 0 01111
Q ss_pred EEEeecccccCCCceEEEeChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCC
Q 001046 601 GYAIRFEDCTGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSAT 677 (1176)
Q Consensus 601 Gy~ir~~~~~~~~t~I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSAT 677 (1176)
|--. .+..+..|..=+++|||||-. +...-++.++...... +.|+|++--+
T Consensus 108 -------------------t~~~---ll~~~~~~tp~s~lIVD~Aek--LS~kE~~~Lld~A~~~--naqvvll~~~ 158 (189)
T 2l8b_A 108 -------------------TGRR---QLLEGMAFTPGSTVIVDQGEK--LSLKETLTLLDGAARH--NVQVLITDSG 158 (189)
T ss_dssp -------------------STTT---TTTTSCCCCCCCEEEEEESSS--HHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred -------------------ehhh---hhcCCCCCCCCCEEEEechhh--cCHHHHHHHHHHHHhc--CCEEEEeCCc
Confidence 1100 011111245667999999963 3333455556555443 5888887554
No 276
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.37 E-value=1.5 Score=56.04 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=18.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+.++++||+|+|||+.+-.+...
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999876655443
No 277
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=86.23 E-value=0.38 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
++.++|+||+||||||.+-..+-
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46789999999999998776553
No 278
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=86.18 E-value=0.21 Score=50.67 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=19.5
Q ss_pred HcCCeEEEEcCCCCcHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQ 558 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~ 558 (1176)
..|..+.++||+||||||.+-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4678999999999999998875
No 279
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=86.05 E-value=0.76 Score=46.10 Aligned_cols=32 Identities=34% Similarity=0.449 Sum_probs=22.4
Q ss_pred HHHHHHHc--CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 531 ELIQAVHD--NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 531 ~ii~ai~~--~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+++..+.. ...++++||+|+|||+.+-.++..
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34444433 468999999999999887655443
No 280
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=85.64 E-value=0.55 Score=48.63 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=21.6
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
..++.++++|++||||||++-...-..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 467899999999999999987765443
No 281
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.63 E-value=1.4 Score=55.46 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=52.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCceEEE
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKY 618 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t~I~~ 618 (1176)
.+-+++.||+|||||+.+-....+.. ...+.+.. ...++..+|
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~----~~f~~v~~------------~~l~s~~vG--------------------- 553 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKG------------PELLTMWFG--------------------- 553 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTT----CEEEECCH------------HHHHTTTCS---------------------
T ss_pred CceEEEecCCCCCchHHHHHHHHHhC----CceEEecc------------chhhccccc---------------------
Confidence 45689999999999976665544432 23333321 122222222
Q ss_pred eChHHHHHHHhhCCCCCCCceEEEcCCCc----CCCc-------hh-HHHHHHHHHHhhCCCccEEEEcCCC
Q 001046 619 MTDGMLLREILIDDNLSQYSVIMLDEAHE----RTIH-------TD-VLFGLLKQLVKRRPDLRLIVTSATL 678 (1176)
Q Consensus 619 ~T~g~Llr~l~~~~~L~~~s~IIiDEaHe----R~~~-------~d-~ll~llk~~~~~r~~~kvIlmSATl 678 (1176)
..+..++.+.....-...++|+|||++. |+.. ++ ++-.+|..+-.....-.|+++-||=
T Consensus 554 -ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN 624 (806)
T 3cf2_A 554 -ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 624 (806)
T ss_dssp -SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-C
T ss_pred -hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCC
Confidence 1233444444333233458999999993 4321 11 2333444443334455688888884
No 282
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=85.57 E-value=0.46 Score=53.07 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=27.5
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEec
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQ 575 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~ 575 (1176)
+..|+.+.|+||+||||||.+-..+--. .|.|+...
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~v 158 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSFA 158 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEECGG
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEEEe
Confidence 4679999999999999999877655432 57776543
No 283
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=85.50 E-value=1.2 Score=52.75 Aligned_cols=57 Identities=9% Similarity=0.133 Sum_probs=42.9
Q ss_pred CCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEe--CcEeEEEE
Q 001046 222 ELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVS--GQKLSLSM 292 (1176)
Q Consensus 222 ~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id--~~ki~Ls~ 292 (1176)
.+|+++.|.|+. +. +.+|+||++++..+ ......+++||.|+|+|.++| .++|.+..
T Consensus 402 ~~g~~f~g~vv~---------l~---~~~glV~v~~l~~d--~~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 402 QPERVWDAVVVD---------RR---GAQATLLIPDLAFD--VQVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp CTTCCEEEEEEE---------EE---TTEEEEEEGGGTEE--EEEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEEEE---------Ee---CcEEEEEECCCCeE--EecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 578899988654 32 24899999999765 233457999999999999999 55666554
No 284
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.44 E-value=1.4 Score=59.25 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=35.5
Q ss_pred ChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchh---HHHHHHHHHHhhCCCccEEEEcCCC
Q 001046 620 TDGMLLREILIDDNLSQYSVIMLDEAHERTIHTD---VLFGLLKQLVKRRPDLRLIVTSATL 678 (1176)
Q Consensus 620 T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d---~ll~llk~~~~~r~~~kvIlmSATl 678 (1176)
+.|.-.|..+....+++-.++|+||+= -.++.. .+...+..+ ..+.-+|+.+.-+
T Consensus 556 SGGQkQRiaiARAl~~~~~IliLDE~t-SaLD~~te~~i~~~l~~~---~~~~T~iiiaHrl 613 (1321)
T 4f4c_A 556 SGGQKQRIAIARALVRNPKILLLDEAT-SALDAESEGIVQQALDKA---AKGRTTIIIAHRL 613 (1321)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCTTTHHHHHHHHHHH---HTTSEEEEECSCT
T ss_pred CHHHHHHHHHHHHHccCCCEEEEeccc-ccCCHHHHHHHHHHHHHH---hCCCEEEEEcccH
Confidence 678888888877788899999999985 223332 233333333 3355667766654
No 285
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=85.06 E-value=0.44 Score=50.53 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=22.2
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
...++++|.||+||||+||+-...-..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999988766554
No 286
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.05 E-value=0.81 Score=48.55 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=27.9
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT 574 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~ 574 (1176)
..|..++|.|++||||||.+.+++..... .++.++++
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~-~~~~v~~~ 57 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLK-MGEPGIYV 57 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEE
Confidence 46889999999999999998887766432 34455554
No 287
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=84.31 E-value=0.42 Score=58.44 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=36.5
Q ss_pred eChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCC
Q 001046 619 MTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATL 678 (1176)
Q Consensus 619 ~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl 678 (1176)
.+.|+-.|..+....+.+..++|+||.- -+++...-..+.+.+.....+.-+|+.|.-+
T Consensus 481 LSgGq~qr~~iAral~~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~ 539 (582)
T 3b5x_A 481 LSGGQRQRVAIARALLRDAPVLILDEAT-SALDTESERAIQAALDELQKNKTVLVIAHRL 539 (582)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 4667777777777778889999999985 3444443333333333333355566666554
No 288
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=84.15 E-value=2.5 Score=39.22 Aligned_cols=59 Identities=7% Similarity=0.004 Sum_probs=48.7
Q ss_pred CCCCCCCEEEEEEEEEeeceeEEEeCCCCCeeeeeeccccccccc-----CC-cccccCCCCEEEEE
Q 001046 219 NEPELYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRI-----GN-AKDVVKRDQEVYVK 279 (1176)
Q Consensus 219 ~~~~~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~-----~~-~~~~~~~Gd~V~Vk 279 (1176)
..+..|+.+-|.|+++.+.++-|.+.+ +..+.|..+.+.|.+- .. +++++++||.|.|+
T Consensus 29 ~~~~~~~~~~AvV~~v~~~~~~v~~~~--g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 29 DIGNSDDILAAVVLSATPGAVEAFRKN--GETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TSCTTTTCEEEEEEEEETTEEEEEETT--SCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred ccCccCCeEEEEEEEeCCCeEEEEEcC--CCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 345568999999999999999999965 5677899999988742 34 67789999999997
No 289
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=84.14 E-value=0.59 Score=47.50 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=20.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+..++|+|++||||||++-...-.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999988765443
No 290
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=83.81 E-value=0.59 Score=54.79 Aligned_cols=43 Identities=21% Similarity=0.330 Sum_probs=33.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAA 581 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA 581 (1176)
.+.+++|+|+||||||+.+...+.. ....+..++|+-|..+..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~-~~~~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYT-GLLRGDRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHH-HHHTTCEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHH-HHHCCCcEEEEeCCCchh
Confidence 4678999999999999986544443 344567899999988775
No 291
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=83.54 E-value=0.59 Score=48.59 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=21.1
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..+..++++||+||||||++-.+.-.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46788999999999999987765433
No 292
>1mp1_A Ser/Arg-related nuclear matrix protein; four helix bundle, RNA binding protein; NMR {Homo sapiens} SCOP: a.188.1.1
Probab=83.53 E-value=1.4 Score=41.32 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=44.2
Q ss_pred hhHHHHHHHHhhhCCCChhHHHHHHHHHhh-CCChHHHHHHHHHc-CCCCCHHHHHHHHHHHHhh
Q 001046 18 LVSKVCSELETHLGFGDKVLAEFITELGRN-CETVDEFDSKLKEN-GAEMPDYFVRTLLTIIHAI 80 (1176)
Q Consensus 18 lvskv~~el~nhlgi~dk~laefii~l~~~-~~~~~~F~~~l~~~-ga~~~~~~~~~l~~li~~~ 80 (1176)
+--=|++.+...||.+|.+|++||+++-+. .++...-.-.|... +++=+..|+..|++|+..-
T Consensus 25 ikpWI~kki~e~LG~EDdvlid~i~~~L~~~~~dpk~lqi~L~gFL~~e~a~~Fv~eLW~LLi~a 89 (111)
T 1mp1_A 25 IKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSA 89 (111)
T ss_dssp GHHHHHHHHHHHHSSCCSHHHHHHHHHTTSSSCCHHHHHHHHTTTSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHhhccCCCHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 445588899999999999999999999986 34543333333221 1122346999999999764
No 293
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=83.50 E-value=0.79 Score=46.51 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
.+.++++|++||||||+.-...-..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999887765443
No 294
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=83.25 E-value=0.67 Score=49.17 Aligned_cols=27 Identities=19% Similarity=0.438 Sum_probs=21.3
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+..|+.++|+||+||||||.+-..+-.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 467899999999999999987765443
No 295
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=83.16 E-value=0.34 Score=51.48 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=17.1
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|..+.|+||+||||||.+-.++
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3578899999999999999877654
No 296
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=83.11 E-value=1.2 Score=56.48 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=20.2
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
..+..++++||+||||||.+-.+.-
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHH
Confidence 4578899999999999987765543
No 297
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=83.06 E-value=0.58 Score=52.36 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=18.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~l 560 (1176)
...++|+||||||||+.+...+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHH
Confidence 4578999999999998776544
No 298
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=82.85 E-value=0.66 Score=46.10 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=17.5
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~ 559 (1176)
..++++|++||||||++-..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36889999999999988776
No 299
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=82.83 E-value=0.76 Score=48.25 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 001046 541 VLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
++++.||+||||+||+....-..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999998876554
No 300
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.80 E-value=0.88 Score=52.52 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=32.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRV 579 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~ 579 (1176)
.+.+++|+|+|||||||.+-..+... ...+++|+++-|...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~-~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE-YMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-HTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH-HHCCCEEEEEeCCcC
Confidence 57789999999999999887766554 445678888888754
No 301
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=82.74 E-value=1.4 Score=51.19 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=28.0
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHHhccc-----CCCEEEEe
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAEAGYT-----TRGKIGCT 574 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle~~~~-----~~~~Ilv~ 574 (1176)
..+..++|+||+||||||.+.++++..... .++.++++
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyi 218 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYI 218 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEE
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEE
Confidence 467899999999999999998877654332 23456554
No 302
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.52 E-value=2 Score=54.92 Aligned_cols=53 Identities=13% Similarity=0.064 Sum_probs=29.1
Q ss_pred HHHHhhhCCCChhHHHHHHHHHhhCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001046 24 SELETHLGFGDKVLAEFITELGRNCETVDEFDSKLKENGAEMPDYFVRTLLTIIHA 79 (1176)
Q Consensus 24 ~el~nhlgi~dk~laefii~l~~~~~~~~~F~~~l~~~ga~~~~~~~~~l~~li~~ 79 (1176)
+++-...|-..=+..-.+..|..+..+ .+...|...|++ ++.+...|.+.+..
T Consensus 18 ~~~A~~~~h~~i~~eHLLlaLl~~~~~--~~~~iL~~~gvd-~~~l~~~l~~~l~~ 70 (854)
T 1qvr_A 18 QVLAQRMKHQAIDLPHLWAVLLKDERS--LAWRLLEKAGAD-PKALKELQERELAR 70 (854)
T ss_dssp HHHHHHTTCSEECHHHHHHHHCCSSSS--HHHHHHHTTSSC-HHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCccHHHHHHHHHhCCCc--HHHHHHHHcCCC-HHHHHHHHHHHHhh
Confidence 344444455555566666666655433 345666677765 34455555555554
No 303
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=82.35 E-value=0.63 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=17.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~ 559 (1176)
.++.++|+||||||||+....+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 3458999999999999876654
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=82.34 E-value=0.77 Score=47.55 Aligned_cols=26 Identities=38% Similarity=0.494 Sum_probs=20.9
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..+..++|+|+.||||||++-...-.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999988765443
No 305
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=82.24 E-value=1.5 Score=54.40 Aligned_cols=138 Identities=21% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHcCCeEEEEcCCCCcHHHH--------------------HHHHHHHhcccCCCEEEEecc-------------------
Q 001046 536 VHDNQVLVVIGETGSGKTTQ--------------------VTQYLAEAGYTTRGKIGCTQP------------------- 576 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~--------------------~~~~lle~~~~~~~~Ilv~~P------------------- 576 (1176)
+..|..+.|+||+||||||. +...+........+.|....+
T Consensus 41 i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ig~ 120 (670)
T 3ux8_A 41 IPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGT 120 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----CCBHHH
T ss_pred ECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccchhceee
Q ss_pred ------------HHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCceEEE--------------------------
Q 001046 577 ------------RRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKY-------------------------- 618 (1176)
Q Consensus 577 ------------rR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t~I~~-------------------------- 618 (1176)
.+....-....+.......+...+.+.-..............
T Consensus 121 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 200 (670)
T 3ux8_A 121 VTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSA 200 (670)
T ss_dssp HTTCC-------------------------CC--------------------------CHHHHHHHHHTTCTTCCTTCBG
T ss_pred eechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhhhcCCc
Q ss_pred --eChHHHHHHHhhCCCCCCCc--eEEEcC--CCcCCCchhHHHHHHHHHHhhCCCccEEEEc
Q 001046 619 --MTDGMLLREILIDDNLSQYS--VIMLDE--AHERTIHTDVLFGLLKQLVKRRPDLRLIVTS 675 (1176)
Q Consensus 619 --~T~g~Llr~l~~~~~L~~~s--~IIiDE--aHeR~~~~d~ll~llk~~~~~r~~~kvIlmS 675 (1176)
.+-|+..+..+....+.+.+ ++|+|| +|........++.+++.+... +.-+|+.|
T Consensus 201 ~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~--g~tvi~vt 261 (670)
T 3ux8_A 201 GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL--GNTLIVVE 261 (670)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT--TCEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc--CCEEEEEe
No 306
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=81.96 E-value=0.49 Score=49.73 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.1
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+..|..+.|+||+||||||.+-+++..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999998887654
No 307
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=81.87 E-value=1.1 Score=45.83 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=22.4
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
+..+..++++|++||||||++-.+.-..
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3466789999999999999987765443
No 308
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=81.85 E-value=0.85 Score=48.20 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=20.1
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.....++++|++||||||++-.+.-.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999998766544
No 309
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=81.60 E-value=0.5 Score=50.68 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=20.7
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|+.+.|+||+||||||.+-...
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3578999999999999999866543
No 310
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=81.59 E-value=0.74 Score=46.72 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=20.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+..++++|+.||||||++-.+.-.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999998876543
No 311
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=81.49 E-value=0.8 Score=45.84 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+..++|+|+.||||||.+-...-.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999987765443
No 312
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=81.41 E-value=5.4 Score=47.56 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=17.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+.++++||+|||||+.+-....+
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999877654433
No 313
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=81.40 E-value=1 Score=44.87 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=18.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~lle 562 (1176)
.++|+|+.||||||++-.+.-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999988775544
No 314
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=81.24 E-value=0.84 Score=45.93 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
+..++++|+.||||||..-...-
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999998766443
No 315
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=81.15 E-value=1.7 Score=58.19 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=34.6
Q ss_pred ChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchhHHHHHHHHHHhhCCCccEEEEcCCC
Q 001046 620 TDGMLLREILIDDNLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATL 678 (1176)
Q Consensus 620 T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d~ll~llk~~~~~r~~~kvIlmSATl 678 (1176)
+.|.-.+..+....+++-.++|+|||= -.++.+.--.+.+.+.....+.-+|+.+.-+
T Consensus 1219 SgGQrQriaiARAllr~~~ILiLDEaT-SaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRL 1276 (1321)
T 4f4c_A 1219 SGGQKQRIAIARALVRNPKILLLDEAT-SALDTESEKVVQEALDRAREGRTCIVIAHRL 1276 (1321)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCC-CSTTSHHHHHHHHHHTTTSSSSEEEEECSSS
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCcc-ccCCHHHHHHHHHHHHHHcCCCEEEEeccCH
Confidence 567766766666677888899999985 2333333223333333344566666666544
No 316
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=81.13 E-value=1.3 Score=49.79 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=29.3
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHHhcccC-----CCEEEEec
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAEAGYTT-----RGKIGCTQ 575 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle~~~~~-----~~~Ilv~~ 575 (1176)
..+..++|.|++|||||+.+.+++....... +++++++.
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 4578999999999999999999887643321 45666653
No 317
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=81.08 E-value=1.3 Score=48.43 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.6
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+..|..++|.||+||||||.+.+++..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999998888764
No 318
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=80.86 E-value=0.75 Score=47.98 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=19.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
.++.++|+||||+|||+.+..++
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46779999999999998877654
No 319
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=80.71 E-value=0.8 Score=46.04 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=19.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
.+..++|+|+.||||||++-...-
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 366899999999999998776543
No 320
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=80.64 E-value=0.77 Score=47.92 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=18.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
.+..+.|+||+||||||.+-...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999875543
No 321
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=80.59 E-value=1.4 Score=45.01 Aligned_cols=27 Identities=30% Similarity=0.602 Sum_probs=21.6
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+..+..++++|++||||||++-.+.-.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999988765544
No 322
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=80.35 E-value=0.73 Score=47.05 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=18.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..++++||+||||||.+-...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHh
Confidence 3578899999999999887764
No 323
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=80.31 E-value=1 Score=48.76 Aligned_cols=20 Identities=35% Similarity=0.409 Sum_probs=16.5
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~l 560 (1176)
.++|+|||||||||.+-...
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 57899999999999766543
No 324
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=80.11 E-value=1 Score=45.76 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+..++++|++||||||++-.+.-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999998765443
No 325
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=80.07 E-value=0.95 Score=45.43 Aligned_cols=22 Identities=36% Similarity=0.738 Sum_probs=18.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~ll 561 (1176)
..++++|++||||||++-.+.-
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3688999999999998876543
No 326
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=79.87 E-value=1.2 Score=45.11 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=20.9
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
...+.++++|++||||||++-.+.-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35678999999999999988765443
No 327
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=79.83 E-value=1.1 Score=46.32 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=18.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+-+||+||+|+||||.+-.++.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999987655443
No 328
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=79.81 E-value=1.4 Score=44.24 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=21.4
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..|..+.+.||.||||||.+-..+-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 67889999999999999887665443
No 329
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=79.67 E-value=1.3 Score=49.61 Aligned_cols=39 Identities=8% Similarity=0.103 Sum_probs=30.1
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEec
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQ 575 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~ 575 (1176)
+..|..++|.|++|+|||+.+.+++...... +..++++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g~~vl~~s 103 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHS 103 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTT-TCEEEEEE
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 4568999999999999999999888775432 35666553
No 330
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=79.60 E-value=6.9 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~ 559 (1176)
.|+.++|+||.||||||.+-+.
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4689999999999999987765
No 331
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=79.10 E-value=1.2 Score=50.42 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=29.5
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHHhccc-----CCCEEEEec
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAEAGYT-----TRGKIGCTQ 575 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle~~~~-----~~~~Ilv~~ 575 (1176)
..+..++|.|++|||||+.+.+++...... .+++++++.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 357899999999999999999888774332 245666654
No 332
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=79.00 E-value=1.3 Score=44.11 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
-++++|.|+.||||||+.-.+.-..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3789999999999999887654443
No 333
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=78.99 E-value=0.98 Score=46.91 Aligned_cols=25 Identities=32% Similarity=0.314 Sum_probs=19.6
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
..+..+.|+|++||||||.+-...-
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567889999999999998766543
No 334
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=78.97 E-value=1 Score=46.63 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=20.6
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
..+..++|+|+.||||||.+-...-
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999998766543
No 335
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=78.86 E-value=0.97 Score=50.44 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=17.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~ll 561 (1176)
..++|+||||||||+.+....-
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4688999999999987765543
No 336
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=78.86 E-value=0.68 Score=49.24 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=20.4
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~ 559 (1176)
+..|..+.|+||.||||||.+-..
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYIL 50 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999987654
No 337
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=78.78 E-value=1.2 Score=45.31 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+..++++|+.||||||++-.+.-.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999988765443
No 338
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=78.67 E-value=1.2 Score=45.79 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=20.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
.+..++++|+.||||||++-.+.-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999876543
No 339
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=78.53 E-value=1.2 Score=45.34 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=19.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
.+..++++|++||||||+.-.+.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999998765543
No 340
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=78.22 E-value=0.79 Score=49.19 Aligned_cols=25 Identities=24% Similarity=0.646 Sum_probs=21.1
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|+.+.|+||+||||||.+-..+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999877643
No 341
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=78.10 E-value=2.3 Score=44.02 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=20.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+..++|+|+.||||||++-.+.-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999998876544
No 342
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=77.88 E-value=1.3 Score=47.42 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=20.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
....++|.|+.||||||++-.+.-..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999988765443
No 343
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=77.87 E-value=1.4 Score=45.94 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 001046 541 VLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
.++|+|++||||||++-.+.-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999988765443
No 344
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=77.77 E-value=0.79 Score=50.42 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=33.7
Q ss_pred ChHHHHHHHhhCCCCCCCceEEEcCCCcCCCch---hHHHHHHHHHHhhCCCccEEEEcCCCC
Q 001046 620 TDGMLLREILIDDNLSQYSVIMLDEAHERTIHT---DVLFGLLKQLVKRRPDLRLIVTSATLD 679 (1176)
Q Consensus 620 T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~---d~ll~llk~~~~~r~~~kvIlmSATl~ 679 (1176)
+-|+..|..+....+.+..+||+||-= -+++. ..++.+++.+.... +.-+|+.|--++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPt-s~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~ 205 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPT-AGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDID 205 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCS
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHH
Confidence 456655555555566777888888864 23332 34555555554222 556777776653
No 345
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=77.74 E-value=4.4 Score=42.47 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=16.7
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~ 559 (1176)
+.+++.||+|+|||+.+...
T Consensus 59 n~ili~GPPGtGKTt~a~al 78 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSF 78 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999877543
No 346
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=77.72 E-value=1.8 Score=46.14 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=24.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT 574 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~ 574 (1176)
.+..+++.|+.||||||++-...-.... +..++.+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCceee
Confidence 5778999999999999998776544322 3445444
No 347
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=77.68 E-value=1.3 Score=45.24 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=17.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+.++||+||||||.+-..+-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999987665543
No 348
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=77.63 E-value=0.79 Score=50.00 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=20.6
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~ 559 (1176)
+..|..+.|+||+||||||.+-..
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCI 52 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999987654
No 349
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=77.61 E-value=0.78 Score=49.84 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=21.1
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|..+.|+||+||||||.+-...
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHh
Confidence 3678999999999999999876543
No 350
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=77.47 E-value=6.5 Score=50.38 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=32.5
Q ss_pred CCCCceEEEcCCCcCCCchhHHHHH----HHHHHhhCCCccEEEEcCCCCHHHHHhhh
Q 001046 634 LSQYSVIMLDEAHERTIHTDVLFGL----LKQLVKRRPDLRLIVTSATLDAEKFSGYF 687 (1176)
Q Consensus 634 L~~~s~IIiDEaHeR~~~~d~ll~l----lk~~~~~r~~~kvIlmSATl~~~~~~~~f 687 (1176)
..+-++|++||.- ++++...-..+ ++.+.. ..+..+|+.|.-++...++..+
T Consensus 750 a~~p~LlLLDEP~-~GlD~~~~~~i~~~il~~L~~-~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 750 ATSQSLVILDELG-RGTSTHDGIAIAYATLEYFIR-DVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp CCTTCEEEEESTT-TTSCHHHHHHHHHHHHHHHHH-TTCCEEEEECSCGGGGGHHHHT
T ss_pred ccCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHH-hcCCeEEEEeCcHHHHHHHhhc
Confidence 5677899999997 77776543333 333332 2366777777766554555444
No 351
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=77.41 E-value=1.7 Score=49.46 Aligned_cols=37 Identities=27% Similarity=0.304 Sum_probs=28.4
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT 574 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~ 574 (1176)
..+..++|.|++||||||.+.+++..... .+++++++
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~-~g~~vlyi 95 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQA-AGGIAAFI 95 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEE
Confidence 45889999999999999999888876533 34556554
No 352
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=77.36 E-value=2.1 Score=44.16 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=21.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
.+..+++.|+.||||||++-.+.-..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45679999999999999988765543
No 353
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=77.18 E-value=3.1 Score=46.66 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=17.0
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~l 560 (1176)
++.|+||+||||||.+-.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999876543
No 354
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=77.17 E-value=0.82 Score=49.12 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=20.9
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|..+.|+||+||||||.+-..+
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999876543
No 355
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=77.08 E-value=1.2 Score=45.90 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..++|+|+.||||||++-.+.-.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999987765443
No 356
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=77.07 E-value=1.4 Score=46.28 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+..+.|+|++||||||++-...-.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999988766544
No 357
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=76.78 E-value=1.3 Score=45.66 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
|..+.++||+||||||.+-..+-.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhh
Confidence 467899999999999987765544
No 358
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=76.77 E-value=1.4 Score=46.25 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
...++|+|+.||||||++-...-..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999988765443
No 359
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=76.77 E-value=0.9 Score=49.08 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=20.7
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~ 559 (1176)
+..|+.+.|+||+||||||.+-..
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l 55 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLI 55 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999987764
No 360
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=76.75 E-value=1.4 Score=50.22 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=23.5
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
..|..+.|+||+||||||.+.+++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999998887764
No 361
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=76.75 E-value=0.73 Score=51.51 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=21.0
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|+.+.|+||+||||||.+-..+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCchHHHHHHHHH
Confidence 3579999999999999999876543
No 362
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=76.70 E-value=1.7 Score=45.51 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
+..+++.|+.||||||++-.+.-..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678999999999999987765443
No 363
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=76.46 E-value=1.5 Score=47.03 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=21.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
....++|+|++||||||++-...-..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999987765443
No 364
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=76.45 E-value=1 Score=46.73 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=19.7
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~ 559 (1176)
+..+..+.|+|++||||||.+-.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L 41 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNL 41 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHH
Confidence 445678999999999999987654
No 365
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=76.45 E-value=2 Score=47.35 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+..++++|++||||||.+-.++-.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999988776543
No 366
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=76.44 E-value=1.3 Score=44.66 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=19.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
.+..++++|+.||||||++-.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~ 26 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALE 26 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999876543
No 367
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=76.38 E-value=0.9 Score=49.61 Aligned_cols=25 Identities=40% Similarity=0.644 Sum_probs=21.0
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|+.+.|+||+||||||.+-...
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHH
Confidence 3578999999999999999876543
No 368
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=76.34 E-value=1.1 Score=49.00 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=21.2
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|..+.|+||+||||||.+-..+
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3579999999999999999877644
No 369
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=76.29 E-value=0.91 Score=49.36 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=21.1
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|..+.|+||+||||||.+-..+
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999876643
No 370
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=76.28 E-value=1.5 Score=45.68 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=18.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~lle 562 (1176)
.++|+|++||||||++-.+.-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998876544
No 371
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=76.27 E-value=1.4 Score=49.40 Aligned_cols=34 Identities=32% Similarity=0.386 Sum_probs=25.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEecc
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQP 576 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~P 576 (1176)
++++|+|+.||||||.+-.++-. ..+.++.|+.|
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~---~~~~~~aVi~~ 38 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE---QHGYKIAVIEN 38 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS---CCCCCEEEECS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh---cCCCcEEEEEe
Confidence 46899999999999988765533 23457777776
No 372
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=76.24 E-value=1.1 Score=48.44 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=21.3
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|+.+.|+||+||||||.+-..+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999877654
No 373
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=76.23 E-value=0.88 Score=48.07 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=37.7
Q ss_pred eChHHHHHHHhhCCCCCCCceEEEcCCC--cCCCchhHHHHHHHHHHhhCCCccEEEEcCCC
Q 001046 619 MTDGMLLREILIDDNLSQYSVIMLDEAH--ERTIHTDVLFGLLKQLVKRRPDLRLIVTSATL 678 (1176)
Q Consensus 619 ~T~g~Llr~l~~~~~L~~~s~IIiDEaH--eR~~~~d~ll~llk~~~~~r~~~kvIlmSATl 678 (1176)
.+.|+..+..+....+.+..++|+||-- -.......+..+++.+... +.-+|+.|--+
T Consensus 134 LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~--g~tiiivtHd~ 193 (214)
T 1sgw_A 134 LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE--KGIVIISSREE 193 (214)
T ss_dssp SCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH--HSEEEEEESSC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence 4678888877777788889999999964 2333344556666655432 34566666554
No 374
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=76.19 E-value=0.95 Score=48.24 Aligned_cols=25 Identities=36% Similarity=0.618 Sum_probs=21.0
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|+.+.|+||+||||||.+-..+
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999876643
No 375
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=76.13 E-value=1.4 Score=44.60 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=18.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~lle 562 (1176)
.++|+|+.||||||++-.+.-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999998775543
No 376
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=76.12 E-value=0.95 Score=49.49 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=21.1
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|..+.|+||+||||||.+-..+
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3579999999999999999876543
No 377
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=76.07 E-value=2.4 Score=46.52 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=19.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
....+++.||+|+|||+.+-.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999987765543
No 378
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=76.02 E-value=1.5 Score=44.90 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=18.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~lle 562 (1176)
.++|.|+.||||||++-...-.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5889999999999998776544
No 379
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=75.99 E-value=0.99 Score=49.16 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.2
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|+.+.|+||+||||||.+-..+
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3579999999999999999877654
No 380
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=75.89 E-value=2.3 Score=43.21 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=24.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT 574 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~ 574 (1176)
.+..++++|+.||||||++-....... ..++.+.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~-~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ-KEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEe
Confidence 467899999999999998876544332 223445444
No 381
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=75.78 E-value=1.6 Score=52.66 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=27.4
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHHhccc-CCCEEEE
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLAEAGYT-TRGKIGC 573 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~lle~~~~-~~~~Ilv 573 (1176)
+..|..++|+||+||||||.+-++++..... ..+.|.+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v 74 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFV 74 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4568999999999999999998875443222 3445544
No 382
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=75.73 E-value=2.8 Score=43.19 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=20.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+..++++|+.||||||++-.+.-.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999998776543
No 383
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=75.73 E-value=2 Score=44.41 Aligned_cols=23 Identities=39% Similarity=0.336 Sum_probs=18.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
.+..+.|+|++||||||.+-.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999876544
No 384
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=75.68 E-value=2.1 Score=58.96 Aligned_cols=92 Identities=21% Similarity=0.195 Sum_probs=53.7
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCce
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTV 615 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t~ 615 (1176)
+..+.+++++|++|||||+.+.+++.+.... +.+++++.- -.+..++. +..+|..+....-+ .+.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~-Ge~~~Fit~-ee~~~~L~---a~~~G~dl~~l~~~--------~pd-- 1142 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDA-EHALDPIY---ARKLGVDIDNLLCS--------QPD-- 1142 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECT-TSCCCHHH---HHHTTCCTTTCEEE--------CCS--
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEc-cccHHHHH---HHHcCCChhHheee--------cCc--
Confidence 4478899999999999999999999887543 556665532 11112222 34566665443211 111
Q ss_pred EEEeChHHHHHHHhhCCCCCCCceEEEcCCC
Q 001046 616 IKYMTDGMLLREILIDDNLSQYSVIMLDEAH 646 (1176)
Q Consensus 616 I~~~T~g~Llr~l~~~~~L~~~s~IIiDEaH 646 (1176)
+....++....-.....+++|||||+-
T Consensus 1143 ----~~e~~~~i~~~l~~~~~~dlvVIDsl~ 1169 (2050)
T 3cmu_A 1143 ----TGEQALEICDALARSGAVDVIVVDSVA 1169 (2050)
T ss_dssp ----SHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred ----chHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 222222211111124678999999966
No 385
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=75.66 E-value=1.9 Score=44.37 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
+..++++|++||||||++-.+.-..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999977655443
No 386
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=75.59 E-value=1 Score=45.84 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+.+.|+|++||||||.+-..+-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999987765543
No 387
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=75.44 E-value=0.99 Score=49.32 Aligned_cols=24 Identities=38% Similarity=0.657 Sum_probs=20.5
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~ 559 (1176)
+..|..+.|+||+||||||.+-..
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIV 53 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHH
Confidence 357899999999999999987654
No 388
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=75.23 E-value=1.8 Score=43.76 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..++++|++||||||++-.+.-.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999988766544
No 389
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=75.13 E-value=1.9 Score=50.77 Aligned_cols=40 Identities=8% Similarity=0.105 Sum_probs=31.5
Q ss_pred HHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEec
Q 001046 535 AVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQ 575 (1176)
Q Consensus 535 ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~ 575 (1176)
-+..|..++|.|++|+|||+.+.+++...... +.+++++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fS 232 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHS 232 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEEC
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEE
Confidence 34568899999999999999999988876443 55676664
No 390
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=75.09 E-value=1 Score=48.91 Aligned_cols=25 Identities=32% Similarity=0.668 Sum_probs=21.0
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|..+.|+||+||||||.+-..+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999876543
No 391
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=75.08 E-value=1.9 Score=48.26 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 530 KELIQAVHDNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 530 ~~ii~ai~~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
..++.++..+..+++.||+|+|||+.+-.+..
T Consensus 37 ~~l~~~l~~~~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 37 NRLLIGICTGGHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp HHHHHHHHHTCCEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEECCCCCcHHHHHHHHHH
Confidence 34455566788999999999999987665443
No 392
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=75.07 E-value=1.6 Score=48.94 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~l 560 (1176)
..++|+|||||||||......
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999998765543
No 393
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=75.06 E-value=1.7 Score=43.96 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=17.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~ll 561 (1176)
...+|+||+||||||.+-....
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999988765443
No 394
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=74.97 E-value=0.94 Score=48.76 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.0
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|+.+.|+||+||||||.+-...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999999877643
No 395
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=74.70 E-value=1.6 Score=49.48 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~l 560 (1176)
..++|+|||||||||.+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHH
Confidence 478999999999998765543
No 396
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=74.69 E-value=3.6 Score=51.90 Aligned_cols=78 Identities=12% Similarity=0.109 Sum_probs=64.5
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcc-hhhhccCCCCe
Q 001046 731 EGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATN-IAEASLTIDGI 809 (1176)
Q Consensus 731 ~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATn-iae~GIdIp~V 809 (1176)
+..+||.+|++.-+...++.+.+.+..+ ++.+..+||+++..++..+++....|...|||+|. .+...+.+.++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~-----gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l 491 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKF-----NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNL 491 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCS-----SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhc-----CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCC
Confidence 5789999999998888888887766432 46788999999999998888888889999999996 44556788888
Q ss_pred eEEE
Q 001046 810 FYVI 813 (1176)
Q Consensus 810 ~~VI 813 (1176)
.+||
T Consensus 492 ~lVV 495 (780)
T 1gm5_A 492 GLVI 495 (780)
T ss_dssp CEEE
T ss_pred ceEE
Confidence 8887
No 397
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=74.56 E-value=1.8 Score=45.12 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=20.8
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..+..++++|++||||||++-...
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4567889999999999999877654
No 398
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=74.33 E-value=1.9 Score=42.87 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=18.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..++++|+.||||||++-.+.-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999988765443
No 399
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=74.26 E-value=1.2 Score=48.93 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.1
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|+.+.|+||+||||||.+-..+
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999876643
No 400
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=74.18 E-value=2.7 Score=42.63 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..+.++|++||||||.+...+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999987776544
No 401
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=74.15 E-value=1.1 Score=46.51 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=18.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~lle 562 (1176)
.++|+|+.||||||++-...-.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999998775543
No 402
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=74.00 E-value=2 Score=44.82 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 001046 541 VLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
.+++.|++||||||++-.+.-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999987765443
No 403
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=73.94 E-value=1.9 Score=44.35 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..++|+|+.||||||+.-.+.-.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998765544
No 404
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=73.94 E-value=2.3 Score=47.57 Aligned_cols=37 Identities=11% Similarity=-0.007 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhccc-CCCEEEEecc
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAEAGYT-TRGKIGCTQP 576 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle~~~~-~~~~Ilv~~P 576 (1176)
+ .+.|.||+||||||.+.+++.+.... .+++++++..
T Consensus 29 G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 29 G-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp E-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred C-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 5 78999999999999999998875432 2567777654
No 405
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=73.93 E-value=2 Score=43.40 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
..++|+|++||||||+.-.+.-..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999887655443
No 406
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=73.77 E-value=2.3 Score=44.57 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
+..+++.|++||||||++-.+.-..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999987765443
No 407
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=73.62 E-value=2.5 Score=48.23 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=28.7
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEec
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQ 575 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~ 575 (1176)
..+..++|.|++|+||||.+.+++..... .+.+++++.
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~-~g~~vlyid 98 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFID 98 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEe
Confidence 35789999999999999999888876533 344565554
No 408
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=73.61 E-value=3 Score=47.36 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=18.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
....+++.||||+|||+.+-....
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999987655443
No 409
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=73.53 E-value=1.2 Score=49.02 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.1
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|..+.|+||+||||||.+-..+
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3678999999999999999876543
No 410
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=73.46 E-value=1.4 Score=46.74 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=19.2
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~ 559 (1176)
..|..+.|.|+.||||||++-..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L 40 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTT
T ss_pred CCceEEEEECCCCCCHHHHHHHH
Confidence 35778999999999999987653
No 411
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=73.38 E-value=2.8 Score=50.08 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=21.6
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..+.+++|.|.||||||+.+-.++..
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999987766654
No 412
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=73.30 E-value=2.3 Score=45.94 Aligned_cols=26 Identities=27% Similarity=0.357 Sum_probs=21.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
.++.++|+|+.||||||++-.+.-..
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999877665433
No 413
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=73.21 E-value=1.3 Score=48.03 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=21.0
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|..+.|+||+||||||.+-..+
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3578999999999999999877643
No 414
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=73.11 E-value=2.4 Score=44.97 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=21.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
....+++.|++||||||++-.+.-..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999988765543
No 415
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=73.08 E-value=1.8 Score=51.67 Aligned_cols=57 Identities=18% Similarity=0.175 Sum_probs=37.3
Q ss_pred HHHHHHHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHH
Q 001046 531 ELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRV 588 (1176)
Q Consensus 531 ~ii~ai~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rv 588 (1176)
.++.-+..+..++|.|++|+|||+.+.+++.......+.+++++.- -....++..|+
T Consensus 234 ~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~-E~s~~~l~~r~ 290 (503)
T 1q57_A 234 DKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML-EESVEETAEDL 290 (503)
T ss_dssp HHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES-SSCHHHHHHHH
T ss_pred HhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec-cCCHHHHHHHH
Confidence 3333355789999999999999999999988765432445665432 11233455544
No 416
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=73.01 E-value=1.9 Score=43.88 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=17.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~ll 561 (1176)
.+++.|+.||||||++-.+.-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877543
No 417
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=73.00 E-value=3.4 Score=43.40 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=20.5
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
+.+..+++.|+.||||||++-...-
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4678899999999999999876543
No 418
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=72.85 E-value=1.6 Score=46.67 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=20.5
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
+..+..+.|.||.||||||.+-.+.-
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35677899999999999998776543
No 419
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=72.79 E-value=2.6 Score=47.42 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..+++.||+|+||||.+-.+.-.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999887765444
No 420
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=72.69 E-value=2.2 Score=42.76 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=18.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~lle 562 (1176)
.++|+|+.||||||+.-...-.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6889999999999987765544
No 421
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=72.65 E-value=2.5 Score=47.27 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=23.5
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
..+..++|.|++|||||+.+.+++...
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999988764
No 422
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=72.63 E-value=5 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
++.++|+||.||||||.+-+...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 78999999999999998776544
No 423
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=72.61 E-value=2.3 Score=45.80 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=21.2
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..+..+.|+||+||||||.+-...-.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999988766544
No 424
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=72.45 E-value=3.2 Score=43.62 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=19.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
.|..+++.|+.||||||++-...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~ 24 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVV 24 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 47889999999999999987654
No 425
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=72.34 E-value=2.2 Score=42.06 Aligned_cols=20 Identities=30% Similarity=0.629 Sum_probs=16.5
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~ 559 (1176)
...+|+||+|||||+.+-..
T Consensus 24 g~~~I~G~NGsGKStil~Ai 43 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAI 43 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 47899999999999876544
No 426
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=72.31 E-value=2.1 Score=43.32 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=17.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~ll 561 (1176)
.++++|+.||||||+.-.+.-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998876544
No 427
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=72.31 E-value=3.3 Score=54.88 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=43.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccC-----------CCEEEEeccHHHHHHHHHHHHHHHh
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTT-----------RGKIGCTQPRRVAAMSVAKRVAEEF 592 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~-----------~~~Ilv~~PrR~lA~qva~rva~e~ 592 (1176)
.+. .+|.|.-|||||+++..-++...... ..+|+|+.=|+.+|.++..||...+
T Consensus 16 ~g~-~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 16 QGE-RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SSC-EEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 344 49999999999988887777654431 2379999999999999999998765
No 428
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=72.28 E-value=2.6 Score=50.38 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=23.9
Q ss_pred HHHHHHHHcCCeEEEEcCCCCcHHHHHHHH
Q 001046 530 KELIQAVHDNQVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 530 ~~ii~ai~~~~~vIv~apTGSGKTt~~~~~ 559 (1176)
..++.++..+..+++.||+|+|||+.+-..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LAraL 61 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIARRL 61 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHHHHG
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHHHHH
Confidence 445666778899999999999999766543
No 429
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=72.15 E-value=1.6 Score=49.90 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=35.0
Q ss_pred eChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchh---HHHHHHHHHHhhCCCccEEEEcCCC
Q 001046 619 MTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTD---VLFGLLKQLVKRRPDLRLIVTSATL 678 (1176)
Q Consensus 619 ~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d---~ll~llk~~~~~r~~~kvIlmSATl 678 (1176)
.+-|+-.|..+....+.+..++++||-= -+++.. .+...++++... .+.-+|+.|.-+
T Consensus 139 LSGGq~QRValArAL~~~P~lLLLDEPt-s~LD~~~r~~l~~~l~~~~~~-~g~tvi~vTHd~ 199 (359)
T 3fvq_A 139 LSGGQQQRAALARALAPDPELILLDEPF-SALDEQLRRQIREDMIAALRA-NGKSAVFVSHDR 199 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHH-TTCEEEEECCCH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCH
Confidence 3567777777766677888999999964 334433 233334444332 255666666654
No 430
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=72.13 E-value=2.3 Score=44.73 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 001046 541 VLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
.+++.|+.||||||++-.+.-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999987765443
No 431
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=72.01 E-value=1.6 Score=43.99 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=15.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+..++++|+.||||||++-.+.-.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999998775433
No 432
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=71.73 E-value=3.4 Score=44.23 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+.+++.||+|+||||.+-.....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999887655443
No 433
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=71.60 E-value=2.6 Score=41.77 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 001046 541 VLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
.++++|+.||||||++-.+.-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999887654433
No 434
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=71.30 E-value=2 Score=49.63 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=16.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~l 560 (1176)
..++|+||||||||+.+...+
T Consensus 3 ~~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHH
Confidence 468899999999998766543
No 435
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=70.87 E-value=1.7 Score=49.89 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=35.1
Q ss_pred eChHHHHHHHhhCCCCCCCceEEEcCCCcCCCch---hHHHHHHHHHHhhCCCccEEEEcCCC
Q 001046 619 MTDGMLLREILIDDNLSQYSVIMLDEAHERTIHT---DVLFGLLKQLVKRRPDLRLIVTSATL 678 (1176)
Q Consensus 619 ~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~---d~ll~llk~~~~~r~~~kvIlmSATl 678 (1176)
.+-|+-.|..+....+.+..++++||-= -+++. ..++.+++++... .+.-+|+.|.-+
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPt-s~LD~~~~~~l~~~l~~l~~~-~g~tii~vTHd~ 194 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPL-SNLDAALRVQMRIEISRLHKR-LGRTMIYVTHDQ 194 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHH-HCCEEEEECSCH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHh-CCCEEEEEECCH
Confidence 3667777766666666778899999964 33443 3344555554432 145666666544
No 436
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=70.76 E-value=2.9 Score=56.80 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=40.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCC
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGE 598 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~ 598 (1176)
.|+++.|.||+||||||.+..++.+.. ..++.++++.+--++.... +..+|..+..
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~-~~g~~~~~i~~e~~~~~~~----~~~~Gv~~~~ 1485 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDPIY----ARKLGVDIDN 1485 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEECTTSCCCHHH----HHHTTCCGGG
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEecCCCCCHHH----HHHcCCCHHH
Confidence 368999999999999999999998864 3467788887754444433 4456666544
No 437
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=70.70 E-value=8.2 Score=50.11 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~ 559 (1176)
++.++|+||.||||||.+-+.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 689999999999999987665
No 438
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=70.68 E-value=1.5 Score=48.45 Aligned_cols=25 Identities=36% Similarity=0.618 Sum_probs=21.0
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|+.+.|+||+||||||.+-..+
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3578999999999999999876643
No 439
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=70.58 E-value=1.8 Score=50.09 Aligned_cols=25 Identities=36% Similarity=0.655 Sum_probs=21.3
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|..+.|+||+||||||.+-..+
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHH
T ss_pred EcCCCEEEEECCCCChHHHHHHHHh
Confidence 3679999999999999999876554
No 440
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=70.41 E-value=2.4 Score=43.59 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.8
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~l 560 (1176)
.+.|+|+.||||||.+-.+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~ 22 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFR 22 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58899999999999876543
No 441
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=70.41 E-value=2.4 Score=43.80 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=16.5
Q ss_pred eEEEEcCCCCcHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~ 559 (1176)
.+.|+|+.||||||++-.+
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999987665
No 442
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=70.32 E-value=3.7 Score=46.39 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHh
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
+.+++.||+|+|||+.+-.+....
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999998777665543
No 443
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=70.24 E-value=2.2 Score=47.79 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=20.3
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..+..+.|+||+||||||.+-...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHH
Confidence 3567789999999999999876543
No 444
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=70.16 E-value=1.8 Score=49.27 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=35.8
Q ss_pred eChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchh---HHHHHHHHHHhhCCCccEEEEcCCC
Q 001046 619 MTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTD---VLFGLLKQLVKRRPDLRLIVTSATL 678 (1176)
Q Consensus 619 ~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d---~ll~llk~~~~~r~~~kvIlmSATl 678 (1176)
.+-|+-.|..+....+.+..++++||-= -+++.. .+..+++.+.... +..+|+.|--+
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~ 206 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPF-AAIDTQIRRELRTFVRQVHDEM-GVTSVFVTHDQ 206 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTT-CCSSHHHHHHHHHHHHHHHHHH-TCEEEEECSCH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCH
Confidence 4667777777777778888999999964 334333 3445555543321 44566655543
No 445
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=70.04 E-value=2.6 Score=42.87 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..++++|++||||||.+...+-.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 57899999999999987776544
No 446
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=69.57 E-value=4.7 Score=54.74 Aligned_cols=90 Identities=21% Similarity=0.181 Sum_probs=53.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHHHhCCccCCeeEEEeecccccCCCceEE
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIK 617 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~e~g~~~G~~vGy~ir~~~~~~~~t~I~ 617 (1176)
.++.+++.||+|||||+.+.+++.+.......-+.+..+- +..++. ++.+|+.+...++-+ |.
T Consensus 1081 ~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~--~~~~~~---~~~~G~d~~~~~~~~--------~~---- 1143 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH--ALDPIY---ARKLGVDIDNLLCSQ--------PD---- 1143 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS--CCCHHH---HHHTTCCGGGCEEEC--------CS----
T ss_pred CCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEccc--chHHHH---HHHhCCCHHHHhhcc--------cc----
Confidence 5788999999999999999999988654422334444321 111111 256777766555420 11
Q ss_pred EeChHHHHHHHhhCCCCCCCceEEEcCCC
Q 001046 618 YMTDGMLLREILIDDNLSQYSVIMLDEAH 646 (1176)
Q Consensus 618 ~~T~g~Llr~l~~~~~L~~~s~IIiDEaH 646 (1176)
|.+..++.+.....-..+.+|++||+.
T Consensus 1144 --~~e~~l~~~~~~ar~~~~~~i~~d~~~ 1170 (1706)
T 3cmw_A 1144 --TGEQALEICDALARSGAVDVIVVDSVA 1170 (1706)
T ss_dssp --SHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred --chHHHHHHHHHHHHhcCCeEEEeCchH
Confidence 244455544321112347899999965
No 447
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=69.46 E-value=2 Score=49.11 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=34.8
Q ss_pred eChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchh---HHHHHHHHHHhhCCCccEEEEcCCC
Q 001046 619 MTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTD---VLFGLLKQLVKRRPDLRLIVTSATL 678 (1176)
Q Consensus 619 ~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d---~ll~llk~~~~~r~~~kvIlmSATl 678 (1176)
.+.|+-.|..+....+.+..++++||-= -+++.. .+..+++.+.... +..+|+.|.-+
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~ 194 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPL-SNLDANLRMIMRAEIKHLQQEL-GITSVYVTHDQ 194 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHH-CCEEEEEESCH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCH
Confidence 3567767766666677888999999964 334433 3444555543321 44566665543
No 448
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=69.23 E-value=23 Score=30.56 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=39.5
Q ss_pred EEEEEEEEe---eceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEeCcEeEEEEeecc
Q 001046 227 YKGRVSRVV---DTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVD 296 (1176)
Q Consensus 227 ~~g~V~~i~---~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id~~ki~Ls~k~~d 296 (1176)
..|+|+-.. .||....-++ +.+ ++|+|.+.... .+..||.|...+..-+++.-...+..++
T Consensus 3 ~~G~Vkwfn~~KGfGFI~~~dg--~~d-FvH~s~i~~~g------~l~~G~~V~F~~~~g~kG~~A~~V~~~~ 66 (74)
T 2k5n_A 3 MNGTITTWFKDKGFGFIKDENG--DNR-YFHVIKVANPD------LIKKDAAVTFEPTTNNKGLSAYAVKVVP 66 (74)
T ss_dssp EEEEEEEEETTTTEEEEEESSS--CEE-EEEGGGBSSGG------GCCTTCEEEEEEEECSSSEEEEEEEECC
T ss_pred cceEEEEEECCCCeEEEecCCC--Cce-EEEHhHcccCC------CCCCCCEEEEEEEeCCCCceeEEEEeCC
Confidence 578888873 3554444333 457 99999996542 5789999998886544444444444443
No 449
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=69.17 E-value=2.4 Score=45.90 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=18.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~l 560 (1176)
...++++|++||||||++-...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 4578999999999999877654
No 450
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=69.04 E-value=2 Score=46.14 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=19.4
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
.. ..+.|+||+||||||.+-...
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHHHHh
Confidence 46 789999999999999877644
No 451
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=68.90 E-value=2 Score=49.03 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=36.0
Q ss_pred eChHHHHHHHhhCCCCCCCceEEEcCCCcCCCch---hHHHHHHHHHHhhCCCccEEEEcCCC
Q 001046 619 MTDGMLLREILIDDNLSQYSVIMLDEAHERTIHT---DVLFGLLKQLVKRRPDLRLIVTSATL 678 (1176)
Q Consensus 619 ~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~---d~ll~llk~~~~~r~~~kvIlmSATl 678 (1176)
.+-|+-.|..+....+.+..++++||-= -+++. ..+..+++.+.... +..+|+.|.-+
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~ 194 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPL-SNLDALLRLEVRAELKRLQKEL-GITTVYVTHDQ 194 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGG-GGSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHHHhC-CCEEEEECCCH
Confidence 4667777777777778888999999964 23333 33455555554321 45566665543
No 452
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=68.39 E-value=27 Score=36.43 Aligned_cols=76 Identities=14% Similarity=0.063 Sum_probs=54.0
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcch-----h-hh
Q 001046 729 EPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNI-----A-EA 802 (1176)
Q Consensus 729 ~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATni-----a-e~ 802 (1176)
.....+||.+|+++-+...++.+... +...+++.+..++|+.+...+...+. ...|+|+|.- + ..
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~Iiv~Tp~~l~~~~~~~ 160 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAI----GIKMEGLECHVFIGGTPLSQDKTRLK-----KCHIAVGSPGRIKQLIELD 160 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHH----TTTSTTCCEEEECTTSCHHHHHHHTT-----SCSEEEECHHHHHHHHHTT
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHH----hcccCCceEEEEeCCCCHHHHHHhcc-----CCCEEEECHHHHHHHHhcC
Confidence 34568999999999888877777654 33334677888999999877766653 3689999962 1 23
Q ss_pred ccCCCCeeEEE
Q 001046 803 SLTIDGIFYVI 813 (1176)
Q Consensus 803 GIdIp~V~~VI 813 (1176)
.++..++.+||
T Consensus 161 ~~~~~~~~~lV 171 (230)
T 2oxc_A 161 YLNPGSIRLFI 171 (230)
T ss_dssp SSCGGGCCEEE
T ss_pred CcccccCCEEE
Confidence 45667776666
No 453
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=68.33 E-value=2.7 Score=42.93 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=17.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~l 560 (1176)
..+.|+|++||||||+.-.+.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999876644
No 454
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=68.25 E-value=3.7 Score=42.70 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 001046 541 VLVVIGETGSGKTTQVTQYLAEA 563 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~lle~ 563 (1176)
..+++|+.|||||+.+...+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 67899999999999877765554
No 455
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=68.01 E-value=2.6 Score=45.14 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=18.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+.+++.||+||||||.+-.....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999887665543
No 456
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=67.89 E-value=2.2 Score=49.01 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=34.8
Q ss_pred eChHHHHHHHhhCCCCCCCceEEEcCCCcCCCchh---HHHHHHHHHHhhCCCccEEEEcCCC
Q 001046 619 MTDGMLLREILIDDNLSQYSVIMLDEAHERTIHTD---VLFGLLKQLVKRRPDLRLIVTSATL 678 (1176)
Q Consensus 619 ~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~d---~ll~llk~~~~~r~~~kvIlmSATl 678 (1176)
.+-|+-.|..+....+.+..++++||-- -+++.. .+..+++.+.... +..+|+.|.-+
T Consensus 140 LSGGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~ 200 (372)
T 1g29_1 140 LSGGQRQRVALGRAIVRKPQVFLMDEPL-SNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQ 200 (372)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTT-TTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCC-ccCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCH
Confidence 3567766666666667788999999964 334433 3444555543321 45566666544
No 457
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=67.74 E-value=17 Score=40.60 Aligned_cols=109 Identities=10% Similarity=-0.059 Sum_probs=61.0
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcchhhhccC---
Q 001046 729 EPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLT--- 805 (1176)
Q Consensus 729 ~~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATniae~GId--- 805 (1176)
..+.+||||+......+-+-..|.. .++...-+-|.....+++. ......|.+.|....-|++
T Consensus 123 ~~~~kVLIfsq~t~~LDilE~~l~~---------~~~~y~RlDG~~~~~~~k~-----~~~~~~i~Lltsag~~gin~~~ 188 (328)
T 3hgt_A 123 EYETETAIVCRPGRTMDLLEALLLG---------NKVHIKRYDGHSIKSAAAA-----NDFSCTVHLFSSEGINFTKYPI 188 (328)
T ss_dssp TSCEEEEEEECSTHHHHHHHHHHTT---------SSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCC
T ss_pred hCCCEEEEEECChhHHHHHHHHHhc---------CCCceEeCCCCchhhhhhc-----ccCCceEEEEECCCCCCcCccc
Confidence 4567999999988776655444432 3677888888754433221 2345667676765555565
Q ss_pred --CCCeeEEEeCCcccceeccCCCCCccccccccCHHHHHHHhcccCCCC-----CcEEEEecChHHHhh
Q 001046 806 --IDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG-----PGKCYRLYTESAYRN 868 (1176)
Q Consensus 806 --Ip~V~~VId~g~~k~~~yd~~~g~~~l~~~p~S~as~~QR~GRAGR~g-----~G~c~~L~t~~~~~~ 868 (1176)
.-+.+.|| .||+. |-.....+|..-||-|.| +-..|||.+....++
T Consensus 189 ~nl~~aD~VI--------~~Dsd---------wNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 189 KSKARFDMLI--------CLDTT---------VDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CCCSCCSEEE--------ECSTT---------CCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred ccCCCCCEEE--------EECCC---------CCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 45666777 33332 222233455454554442 557999998766543
No 458
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=67.70 E-value=2.2 Score=48.90 Aligned_cols=24 Identities=38% Similarity=0.657 Sum_probs=20.6
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
..|..+.|.||+||||||.+-...
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHH
Confidence 578999999999999999876543
No 459
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=67.69 E-value=5.6 Score=42.52 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=21.0
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+.+..+++.|+.||||||++-...-.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999998775433
No 460
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=67.53 E-value=2.9 Score=47.86 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=16.7
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~l 560 (1176)
..+|+|||||||||.+-...
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 78899999999999875443
No 461
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=67.40 E-value=4.7 Score=48.68 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=28.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHhcccC---CCEEEEeccHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAEAGYTT---RGKIGCTQPRR 578 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle~~~~~---~~~Ilv~~PrR 578 (1176)
....++|.|.||||||+.+-.+++...+.. ..+++++-|..
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 467899999999999988877776543322 22566666653
No 462
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=67.29 E-value=2.3 Score=48.58 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=35.9
Q ss_pred ChHHHHHHHhhCCCCCCCceEEEcCCCcCCCc---hhHHHHHHHHHHhhCCCccEEEEcCCC
Q 001046 620 TDGMLLREILIDDNLSQYSVIMLDEAHERTIH---TDVLFGLLKQLVKRRPDLRLIVTSATL 678 (1176)
Q Consensus 620 T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~---~d~ll~llk~~~~~r~~~kvIlmSATl 678 (1176)
+-|+-.|..+....+.+..++++||.= -+++ ...++.+++.+... .+.-+|+.|.-+
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPT-s~LD~~~~~~i~~lL~~l~~~-~g~Tii~vTHdl 224 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQAT-SALDPATTRSILELLKDINRR-LGLTILLITHEM 224 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHH-SCCEEEEEESCH
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCC-ccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCH
Confidence 557777777766677888899999964 2333 33455566655433 245667766654
No 463
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=67.25 E-value=1.9 Score=49.11 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=37.1
Q ss_pred eChHHHHHHHhhCCCCCCCceEEEcCCCcCCCch---hHHHHHHHHHHhhCCCccEEEEcCCC
Q 001046 619 MTDGMLLREILIDDNLSQYSVIMLDEAHERTIHT---DVLFGLLKQLVKRRPDLRLIVTSATL 678 (1176)
Q Consensus 619 ~T~g~Llr~l~~~~~L~~~s~IIiDEaHeR~~~~---d~ll~llk~~~~~r~~~kvIlmSATl 678 (1176)
.+.|+-.|..+....+.+..++++||-- -+++. ..+..+++.+.... +..+|+.|.-+
T Consensus 128 LSgGq~QRvalAraL~~~P~lLLLDEP~-s~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~ 188 (348)
T 3d31_A 128 LSGGEQQRVALARALVTNPKILLLDEPL-SALDPRTQENAREMLSVLHKKN-KLTVLHITHDQ 188 (348)
T ss_dssp SCHHHHHHHHHHHHTTSCCSEEEEESSS-TTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 4667777777777788899999999964 33433 34455555554332 45666666544
No 464
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=66.77 E-value=2.7 Score=45.72 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=20.4
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+. |..+.|+||+||||||.+-..+
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHT
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHh
Confidence 46 8899999999999999877643
No 465
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=66.60 E-value=3 Score=43.52 Aligned_cols=21 Identities=29% Similarity=0.582 Sum_probs=17.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~ 559 (1176)
+..++|+|+.||||||++-.+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 347889999999999987664
No 466
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=66.52 E-value=2.9 Score=46.25 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=17.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~ 559 (1176)
+..+.|+|++||||||.+-..
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L 51 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQI 51 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 347889999999999987544
No 467
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=66.27 E-value=14 Score=35.56 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=40.3
Q ss_pred CCCEEEEEEEEEeeceeEEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEE
Q 001046 223 LYQVYKGRVSRVVDTGCFVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKV 280 (1176)
Q Consensus 223 ~g~~~~g~V~~i~~~G~fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV 280 (1176)
.|.-|+|.|+.|.+-+++|..++.-..+--||.+++.--........+.+||+|+|-.
T Consensus 14 ~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~ 71 (128)
T 3h8z_A 14 NGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYS 71 (128)
T ss_dssp TSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEE
T ss_pred CCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEe
Confidence 3899999999999999999997632225678888775322122234589999998744
No 468
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=66.27 E-value=2.3 Score=45.83 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=19.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+..++++|++||||||.+-...-.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999987765433
No 469
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=65.73 E-value=3 Score=46.44 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=19.9
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
..+..+.|+|++||||||.+-.+.-
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456889999999999998765543
No 470
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=65.68 E-value=4.9 Score=46.75 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 529 KKELIQAVHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 529 q~~ii~ai~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
++.+-.+...+..+.|+|++|+||||.+-..+
T Consensus 59 ~~~L~~~~~~~~~valvG~nGaGKSTLln~L~ 90 (413)
T 1tq4_A 59 SDALKEIDSSVLNVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp HHHHHHHHHCCEEEEEEECTTSSHHHHHHHHH
T ss_pred hhhhhhcccCCeEEEEECCCCCcHHHHHHHHh
Confidence 33333444556689999999999999887654
No 471
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=65.33 E-value=3.5 Score=49.53 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=28.0
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT 574 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~ 574 (1176)
+..|..++|.|++||||||.+.+++..... .+.+++++
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~G~~vi~~ 315 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACA-NKERAILF 315 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHT-TTCCEEEE
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-CCCCEEEE
Confidence 467899999999999999998887765432 24445444
No 472
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=65.24 E-value=3.4 Score=46.32 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=21.7
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
..+..++|.||+|+|||+.+.+++..
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 34677899999999999988887665
No 473
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=64.41 E-value=4 Score=43.06 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+..+++.|+.||||||++-...-.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999998876544
No 474
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=64.39 E-value=1.9 Score=49.18 Aligned_cols=59 Identities=22% Similarity=0.240 Sum_probs=36.1
Q ss_pred eChHHHHHHHhhCCCCCCCceEEEcCCC--cCCCchhHHHHHHHHHHhhCCCccEEEEcCCC
Q 001046 619 MTDGMLLREILIDDNLSQYSVIMLDEAH--ERTIHTDVLFGLLKQLVKRRPDLRLIVTSATL 678 (1176)
Q Consensus 619 ~T~g~Llr~l~~~~~L~~~s~IIiDEaH--eR~~~~d~ll~llk~~~~~r~~~kvIlmSATl 678 (1176)
.+.|+-.|..+....+.+..++++||-= ........+..+++.+.... +..+|+.|.-+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~ 201 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-GVTLLVVSHDP 201 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH-CCEEEEEESCH
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 3567777777666677888999999954 22233344555666554322 45566666543
No 475
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=64.01 E-value=3.4 Score=44.97 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=18.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+.+++.||+||||||.+-.....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHHH
Confidence 34899999999999887665443
No 476
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=63.97 E-value=2.8 Score=43.01 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=18.9
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~ 559 (1176)
..+..++++|++|+||||.+-.+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l 46 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTL 46 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 45678999999999999876543
No 477
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=63.79 E-value=4.8 Score=42.95 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=19.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 538 DNQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 538 ~~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
....+.|.||+||||||.+-...-.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999988765544
No 478
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=63.71 E-value=5.2 Score=44.33 Aligned_cols=25 Identities=16% Similarity=0.412 Sum_probs=21.7
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..++.+.++||+|+||||.+-..+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999999988766
No 479
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=63.68 E-value=3.3 Score=47.59 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=20.9
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
..++.+++.||+||||||.+-...-
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4678999999999999998776553
No 480
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=63.64 E-value=2.3 Score=43.60 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=25.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEeccHHHHHHHHHHHHHH
Q 001046 542 LVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAE 590 (1176)
Q Consensus 542 vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~~PrR~lA~qva~rva~ 590 (1176)
++|.|++|||||+.+.+++.. +..++++..-...-.+..+|++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-----APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-----CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-----CCCeEEEecCCCCCHHHHHHHHH
Confidence 689999999999988887543 23466655432222344444444
No 481
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=63.59 E-value=5.2 Score=42.50 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=18.1
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
..+..+++.|+.||||||++-...-
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999876543
No 482
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=63.45 E-value=4.7 Score=45.46 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=25.5
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT 574 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~ 574 (1176)
..+..+.|+|++||||||.+-..+-.. ...+++|.+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~-~~~~g~v~i~ 89 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL-TAAGHKVAVL 89 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh-hhCCCEEEEE
Confidence 457799999999999999887765432 2224555443
No 483
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=63.45 E-value=5 Score=45.70 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=21.1
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
...++.+.++|++|+||||.+-..+
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCCEEEEECCCCccHHHHHHHHh
Confidence 3478999999999999999886654
No 484
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=63.39 E-value=4.2 Score=42.28 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=17.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~ 559 (1176)
....+|+||+||||||.+-..
T Consensus 23 ~~~~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHH
Confidence 357899999999999886544
No 485
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=63.29 E-value=5.1 Score=47.38 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=20.9
Q ss_pred HHHHH--HcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 532 LIQAV--HDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 532 ii~ai--~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
++..+ ....+++++||+|+|||+.+-.+.
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la~~la 222 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEGLA 222 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHHHHH
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHHHHHH
Confidence 44444 345689999999999998765543
No 486
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=63.22 E-value=3.8 Score=44.74 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=17.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~lle 562 (1176)
.+.|+||+||||||.+-..+-.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999988765543
No 487
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=62.94 E-value=3.8 Score=44.95 Aligned_cols=22 Identities=36% Similarity=0.738 Sum_probs=18.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~ll 561 (1176)
..++++|++||||||++-.+.-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999998876543
No 488
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=62.76 E-value=2.5 Score=51.44 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=19.9
Q ss_pred HcCCeEEEEcCCCCcHHHHHHHH
Q 001046 537 HDNQVLVVIGETGSGKTTQVTQY 559 (1176)
Q Consensus 537 ~~~~~vIv~apTGSGKTt~~~~~ 559 (1176)
..|+.+.|+||+||||||.+-..
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l 387 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLI 387 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHH
Confidence 57999999999999999987543
No 489
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=62.62 E-value=3.2 Score=48.99 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.2
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHHH
Q 001046 536 VHDNQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 536 i~~~~~vIv~apTGSGKTt~~~~~l 560 (1176)
+..|..+.|+||+||||||.+-..+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~ 159 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLC 159 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHH
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHh
Confidence 4589999999999999999876644
No 490
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=62.46 E-value=6.4 Score=41.00 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe-ccH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT-QPR 577 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~-~Pr 577 (1176)
++.+++-|.-|||||||+-... +. +..+..++++ .|.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~-~~-L~~~~~v~~~~eP~ 39 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVY-HR-LVKDYDVIMTREPG 39 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH-HH-HTTTSCEEEEESST
T ss_pred CCEEEEECCCCCcHHHHHHHHH-HH-HHCCCCEEEeeCCC
Confidence 4578899999999999986543 32 2234445443 564
No 491
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=62.42 E-value=58 Score=32.81 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=52.5
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcc-----hhh-hc
Q 001046 730 PEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATN-----IAE-AS 803 (1176)
Q Consensus 730 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATn-----iae-~G 803 (1176)
....+||.+|+++-+..+++.+.+.. ...+++.+..++|+.....+...+. +...|+|+|. .+. ..
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~ 141 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVS----KHMGGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGV 141 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHT----TTSSSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTC
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHH----hhcCCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCC
Confidence 34579999999998887777776543 2334677888999988776554432 3568999996 222 23
Q ss_pred cCCCCeeEEE
Q 001046 804 LTIDGIFYVI 813 (1176)
Q Consensus 804 IdIp~V~~VI 813 (1176)
+.+.++.+||
T Consensus 142 ~~~~~~~~lV 151 (206)
T 1vec_A 142 AKVDHVQMIV 151 (206)
T ss_dssp SCCTTCCEEE
T ss_pred cCcccCCEEE
Confidence 4567777776
No 492
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=61.85 E-value=4.4 Score=44.28 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=18.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle 562 (1176)
+-+++.||+||||||.+-...-.
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34999999999999887765443
No 493
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=61.75 E-value=64 Score=28.80 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=45.0
Q ss_pred CCCCCEEEEEEEEEeecee-EEEeCCCCCeeeeeecccccccccCCcccccCCCCEEEEEEEEEeC-c-EeEEEEeec
Q 001046 221 PELYQVYKGRVSRVVDTGC-FVQLNDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISVSG-Q-KLSLSMRDV 295 (1176)
Q Consensus 221 ~~~g~~~~g~V~~i~~~G~-fV~l~~~~~~eGlvhisels~~~~~~~~~~~~~Gd~V~VkV~~id~-~-ki~Ls~k~~ 295 (1176)
+.......|+|+-.. .|. ||.-++ .+.+-|+|+|.+... ...+..||.|...+..-.. + .....+..+
T Consensus 13 ~s~~~~~~G~Vkwf~-KGfGFI~~dd-gg~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~~~k~Gk~~A~~V~~~ 83 (89)
T 1wfq_A 13 TSAALRETGVIEKLL-TSYGFIQCSE-RQARLFFHCSQYNGN-----LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKI 83 (89)
T ss_dssp SSCCCEEEEEEEEEC-SSEEEEEETT-TTEEEEEETTTCSSC-----TTTCCTTCCEEEEEEECSSSCCEEEEEEEES
T ss_pred CCcccccceEEEEEe-CCeeEEecCC-CCccEEEEhHHhhCc-----cCCCCCCCEEEEEEEECCCCCCcEEEEEEEC
Confidence 444567899999884 444 666554 147999999998654 2457889999988866443 4 334444433
No 494
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=61.54 E-value=13 Score=48.96 Aligned_cols=79 Identities=10% Similarity=0.189 Sum_probs=64.1
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhccCCCCCCeEEEEecCCCCHHHHHhhcCCCCCCCceEEEEcc-hhhhccCCCC
Q 001046 730 PEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATN-IAEASLTIDG 808 (1176)
Q Consensus 730 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~l~~~~~~~~v~~lhs~l~~~~r~~i~~~f~~g~~kVlVATn-iae~GIdIp~ 808 (1176)
.+..+||.+|+..-+...++.+.+.+..+ ++.+..+++..+..++..+++....|...|||+|. .+...+.+.+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~-----~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~ 725 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANW-----PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 725 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTT-----TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcC-----CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccc
Confidence 45689999999998888888887765322 45678899999999988888888889999999994 5556688899
Q ss_pred eeEEE
Q 001046 809 IFYVI 813 (1176)
Q Consensus 809 V~~VI 813 (1176)
+.+||
T Consensus 726 l~lvI 730 (1151)
T 2eyq_A 726 LGLLI 730 (1151)
T ss_dssp EEEEE
T ss_pred cceEE
Confidence 98877
No 495
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=61.36 E-value=6.9 Score=41.75 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=24.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHhcccCCCEEEEe
Q 001046 540 QVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT 574 (1176)
Q Consensus 540 ~~vIv~apTGSGKTt~~~~~lle~~~~~~~~Ilv~ 574 (1176)
..++++|..|+||||.+..++.... .+.+++++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~--~g~~v~vv 47 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE--DNYKVAYV 47 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT--TTSCEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH--CCCeEEEE
Confidence 4688899999999999888776543 34455444
No 496
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=61.32 E-value=4.6 Score=41.67 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=18.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLA 561 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~ll 561 (1176)
+..+.|+|+.||||||+.-.+.-
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34788899999999998876544
No 497
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=61.27 E-value=4.7 Score=38.95 Aligned_cols=22 Identities=36% Similarity=0.595 Sum_probs=18.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~lle 562 (1176)
.++++|++|+||||.+-.++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999988776543
No 498
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=61.18 E-value=4.1 Score=46.57 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=17.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~l 560 (1176)
....+|+|+||+|||+.+-...
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3578999999999998865543
No 499
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=61.03 E-value=7 Score=45.94 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 001046 539 NQVLVVIGETGSGKTTQVTQYLAE 562 (1176)
Q Consensus 539 ~~~vIv~apTGSGKTt~~~~~lle 562 (1176)
++.+++.||+|+|||+.+-....+
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 358999999999999877654443
No 500
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=60.98 E-value=4.8 Score=38.91 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=0.0
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 001046 541 VLVVIGETGSGKTTQVTQYL 560 (1176)
Q Consensus 541 ~vIv~apTGSGKTt~~~~~l 560 (1176)
.++++|++|+|||+.+-.++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Done!