AmiGO: BLAST Results


BLAST match view associations BLAST with EMB25 EMB25 EMB25 AT1G70070	protein from Arabidopsis thaliana	0.
BLAST match view associations BLAST with orf19.6425 orf19.6425 orf19.6425	gene_product from Candida albicans	4.3e-75
BLAST match view associations BLAST with skih-2 skih-2 skih-2	gene from Caenorhabditis elegans	6.6e-74
BLAST match view associations BLAST with DDB_G0275633 DDB_G0275633 DDB_G0275633 superkiller viralicidic activity 2-like protein	gene from Dictyostelium discoideum	2.3e-66
BLAST match view associations BLAST with MTR4 MTR4 MTR4 homolog of yeast MTR4	protein from Arabidopsis thaliana	7.8e-65
BLAST match view associations BLAST with mtr-4 mtr-4 mtr-4	gene from Caenorhabditis elegans	4.0e-64
BLAST match view associations BLAST with SKIV2L2 SKIV2L2 SKIV2L2 Uncharacterized protein	protein from Bos taurus	1.9e-61
BLAST match view associations BLAST with SKIV2L2 SKIV2L2 SKIV2L2 Uncharacterized protein	protein from Bos taurus	6.5e-60
BLAST match view associations BLAST with Skiv2l2 Skiv2l2 Skiv2l2 superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein from Mus musculus	1.0e-59
BLAST match view associations BLAST with HEN2 HEN2 HEN2 hua enhancer 2	protein from Arabidopsis thaliana	1.6e-59
BLAST match view associations BLAST with SKIV2L2 SKIV2L2 SKIV2L2 Uncharacterized protein	protein from Sus scrofa	1.7e-59
BLAST match view associations BLAST with SKIV2L2 SKIV2L2 SKIV2L2 Superkiller viralicidic activity 2-like 2	protein from Homo sapiens	3.6e-59
BLAST match view associations BLAST with SKIV2L2 SKIV2L2 SKIV2L2 Uncharacterized protein	protein from Canis lupus familiaris	5.5e-59
BLAST match view associations BLAST with SKIV2L2 SKIV2L2 SKIV2L2 Superkiller viralicidic activity 2-like 2	protein from Homo sapiens	7.0e-59
BLAST match view associations BLAST with l(2)35Df l(2)35Df l(2)35Df lethal (2) 35Df	protein from Drosophila melanogaster	7.1e-59
BLAST match view associations BLAST with skiv2l2 skiv2l2 skiv2l2 superkiller viralicidic activity 2-like 2	gene_product from Danio rerio	3.4e-57
BLAST match view associations BLAST with helY helY helY Probable helicase HelY	protein from Mycobacterium tuberculosis	4.0e-50
BLAST match view associations BLAST with SKI2 SKI2 SKI2 Ski complex component and putative RNA helicase	gene from Saccharomyces cerevisiae	5.2e-49
BLAST match view associations BLAST with skiv2l skiv2l skiv2l superkiller viralicidic activity 2 (S. cerevisiae homolog)-like	gene_product from Danio rerio	6.2e-44
BLAST match view associations BLAST with SKIV2L SKIV2L SKIV2L Helicase SKI2W	protein from Homo sapiens	1.1e-42
BLAST match view associations BLAST with SKIV2L SKIV2L SKIV2L Uncharacterized protein	protein from Sus scrofa	1.1e-42
BLAST match view associations BLAST with SKIV2L SKIV2L SKIV2L Helicase SKI2W	protein from Homo sapiens	2.4e-42
BLAST match view associations BLAST with LOC100139548 LOC100139548 LOC100139548 Uncharacterized protein	protein from Bos taurus	4.0e-42
BLAST match view associations BLAST with Skiv2l Skiv2l Skiv2l superkiller viralicidic activity 2-like (S. cerevisiae )	gene from Rattus norvegicus	5.0e-42
BLAST match view associations BLAST with SKIV2L SKIV2L SKIV2L Uncharacterized protein	protein from Canis lupus familiaris	5.1e-42
BLAST match view associations BLAST with F1N993 F1N993 F1N993 Uncharacterized protein	protein from Gallus gallus	7.8e-42
BLAST match view associations BLAST with orf19.1335 orf19.1335 orf19.1335	gene_product from Candida albicans	3.2e-41
BLAST match view associations BLAST with AT3G46960 AT3G46960 AT3G46960	protein from Arabidopsis thaliana	9.5e-40
BLAST match view associations BLAST with MGG_03931 MGG_03931 MGG_03931 FRQ-interacting RNA helicase	protein from Magnaporthe oryzae 70-15	1.9e-39
BLAST match view associations BLAST with tst tst tst twister	protein from Drosophila melanogaster	9.5e-39
BLAST match view associations BLAST with DDB_G0277211 DDB_G0277211 DDB_G0277211 superkiller viralicidic activity 2-like protein	gene from Dictyostelium discoideum	6.2e-38
BLAST match view associations BLAST with MTR4 MTR4 MTR4 ATP-dependent 3'-5' RNA helicase of the DExD/H family	gene from Saccharomyces cerevisiae	1.0e-37
BLAST match view associations BLAST with PFF0100w PFF0100w PFF0100w putative ATP dependent RNA helicase	gene from Plasmodium falciparum	5.9e-35
BLAST match view associations BLAST with MGG_07250 MGG_07250 MGG_07250 DEAD/DEAH box helicase	protein from Magnaporthe oryzae 70-15	3.7e-23
BLAST match view associations BLAST with C28H8.3 C28H8.3 C28H8.3	gene from Caenorhabditis elegans	2.6e-21
BLAST match view associations BLAST with DDB_G0278827 DDB_G0278827 DDB_G0278827 Probable ATP-dependent RNA helicase DDX60	gene from Dictyostelium discoideum	7.0e-21
BLAST match view associations BLAST with helq-1 helq-1 helq-1	gene from Caenorhabditis elegans	9.3e-21
BLAST match view associations BLAST with DDX60 DDX60 DDX60 Uncharacterized protein	protein from Canis lupus familiaris	2.8e-20
BLAST match view associations BLAST with DDX60 DDX60 DDX60 Uncharacterized protein	protein from Canis lupus familiaris	2.8e-20
BLAST match view associations BLAST with Ddx60 Ddx60 Ddx60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	gene from Rattus norvegicus	1.7e-19
BLAST match view associations BLAST with SLH1 SLH1 SLH1 Putative RNA helicase related to Ski2p	gene from Saccharomyces cerevisiae	4.3e-19
BLAST match view associations BLAST with MGG_05900 MGG_05900 MGG_05900 Uncharacterized protein	protein from Magnaporthe oryzae 70-15	1.6e-18
BLAST match view associations BLAST with BRR2 BRR2 BRR2 RNA-dependent ATPase RNA helicase (DEIH box)	gene from Saccharomyces cerevisiae	7.2e-18
BLAST match view associations BLAST with DDX60L DDX60L DDX60L Probable ATP-dependent RNA helicase DDX60-like	protein from Homo sapiens	9.1e-18
BLAST match view associations BLAST with orf19.3980 orf19.3980 orf19.3980	gene_product from Candida albicans	1.4e-17
BLAST match view associations BLAST with helq helq helq helicase, POLQ-like	gene_product from Danio rerio	1.5e-17
BLAST match view associations BLAST with orf19.3098 orf19.3098 orf19.3098	gene_product from Candida albicans	2.6e-17
BLAST match view associations BLAST with DDX60 DDX60 DDX60 Probable ATP-dependent RNA helicase DDX60	protein from Homo sapiens	6.8e-17
BLAST match view associations BLAST with CG5205 CG5205 CG5205	protein from Drosophila melanogaster	9.6e-17
BLAST match view associations BLAST with HELQ HELQ HELQ Uncharacterized protein	protein from Canis lupus familiaris	1.6e-16
BLAST match view associations BLAST with HELQ HELQ HELQ Uncharacterized protein	protein from Canis lupus familiaris	1.7e-16
BLAST match view associations BLAST with HELQ HELQ HELQ Uncharacterized protein	protein from Gallus gallus	2.1e-16
BLAST match view associations BLAST with Hfm1 Hfm1 Hfm1 HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)	gene from Rattus norvegicus	2.3e-16
BLAST match view associations BLAST with Helq Helq Helq helicase, POLQ-like	protein from Mus musculus	2.6e-16
BLAST match view associations BLAST with DDB_G0279107 DDB_G0279107 DDB_G0279107 Helicase POLQ-like	gene from Dictyostelium discoideum	3.4e-16
BLAST match view associations BLAST with ascc3 ascc3 ascc3 activating signal cointegrator 1 complex subunit	gene from Dictyostelium discoideum	7.6e-16
BLAST match view associations BLAST with HFM1 HFM1 HFM1 Meiosis specific DNA helicase	gene from Saccharomyces cerevisiae	8.9e-16
BLAST match view associations BLAST with PF14_0370 PF14_0370 PF14_0370 RNA helicase, putative	gene from Plasmodium falciparum	1.4e-15
BLAST match view associations BLAST with PF14_0370 PF14_0370 PF14_0370 DEAD/DEAH box helicase, putative	protein from Plasmodium falciparum 3D7	1.4e-15
BLAST match view associations BLAST with Polq Polq Polq polymerase (DNA directed), theta	gene from Rattus norvegicus	4.0e-15
BLAST match view associations BLAST with POLQ POLQ POLQ Uncharacterized protein	protein from Gallus gallus	8.9e-15
BLAST match view associations BLAST with MGG_06124 MGG_06124 MGG_06124 Activating signal cointegrator 1 complex subunit 3	protein from Magnaporthe oryzae 70-15	1.8e-14
BLAST match view associations BLAST with HFM1 HFM1 HFM1 Uncharacterized protein	protein from Sus scrofa	1.9e-14
BLAST match view associations BLAST with mus301 mus301 mus301 mutagen-sensitive 301	protein from Drosophila melanogaster	2.1e-14
BLAST match view associations BLAST with HELQ HELQ HELQ Uncharacterized protein	protein from Sus scrofa	2.7e-14
BLAST match view associations BLAST with mus308 mus308 mus308 mutagen-sensitive 308	protein from Drosophila melanogaster	3.2e-14
BLAST match view associations BLAST with HELQ HELQ HELQ Helicase POLQ-like	protein from Homo sapiens	4.9e-14
BLAST match view associations BLAST with DDX60 DDX60 DDX60 Uncharacterized protein	protein from Sus scrofa	4.9e-14
BLAST match view associations BLAST with AT2G42270 AT2G42270 AT2G42270	protein from Arabidopsis thaliana	6.2e-14
BLAST match view associations BLAST with HFM1 HFM1 HFM1 Uncharacterized protein	protein from Canis lupus familiaris	9.9e-14
BLAST match view associations BLAST with HFM1 HFM1 HFM1 Uncharacterized protein	protein from Canis lupus familiaris	1.1e-13
BLAST match view associations BLAST with AT4G32700 AT4G32700 AT4G32700	protein from Arabidopsis thaliana	1.2e-13
BLAST match view associations BLAST with F1SU44 F1SU44 F1SU44 Uncharacterized protein	protein from Sus scrofa	1.5e-13
BLAST match view associations BLAST with HFM1 HFM1 HFM1 Probable ATP-dependent DNA helicase HFM1	protein from Homo sapiens	1.6e-13
BLAST match view associations BLAST with Ascc3 Ascc3 Ascc3 activating signal cointegrator 1 complex subunit 3	protein from Mus musculus	2.1e-13
BLAST match view associations BLAST with HFM1 HFM1 HFM1 Uncharacterized protein	protein from Bos taurus	3.3e-13
BLAST match view associations BLAST with Ascc3 Ascc3 Ascc3 activating signal cointegrator 1 complex subunit 3	gene from Rattus norvegicus	5.3e-13
BLAST match view associations BLAST with ascc3 ascc3 ascc3 Activating signal cointegrator 1 complex subunit 3	protein from Gallus gallus	5.3e-13
BLAST match view associations BLAST with snrp-200 snrp-200 snrp-200	gene from Caenorhabditis elegans	7.2e-13
BLAST match view associations BLAST with Y46G5A.4 Y46G5A.4 Y46G5A.4 Putative U5 small nuclear ribonucleoprotein 200 kDa helicase	protein from Caenorhabditis elegans	7.2e-13
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  001047
        (1174 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2020573 - symbol:EMB25 "EMBRYO DEFECTIVE 25" s...  3904  0.        1
CGD|CAL0002171 - symbol:orf19.6425 species:5476 "Candida ...   753  4.3e-75   2
POMBASE|SPCC550.03c - symbol:SPCC550.03c "Ski complex RNA...   766  8.5e-75   2
WB|WBGene00008502 - symbol:skih-2 species:6239 "Caenorhab...   769  6.6e-74   2
ASPGD|ASPL0000004985 - symbol:AN6007 species:162425 "Emer...   463  3.7e-70   2
DICTYBASE|DDB_G0275633 - symbol:DDB_G0275633 "superkiller...   452  2.3e-66   3
TAIR|locus:2026001 - symbol:MTR4 "homolog of yeast MTR4" ...   431  7.8e-65   3
WB|WBGene00012342 - symbol:mtr-4 species:6239 "Caenorhabd...   391  4.0e-64   3
UNIPROTKB|G3MYJ7 - symbol:SKIV2L2 "Uncharacterized protei...   396  1.9e-61   2
UNIPROTKB|F1MJX4 - symbol:SKIV2L2 "Uncharacterized protei...   396  6.5e-60   2
MGI|MGI:1919448 - symbol:Skiv2l2 "superkiller viralicidic...   396  1.0e-59   2
TAIR|locus:2063648 - symbol:HEN2 "hua enhancer 2" species...   407  1.6e-59   2
UNIPROTKB|F1SLL6 - symbol:SKIV2L2 "Uncharacterized protei...   396  1.7e-59   2
UNIPROTKB|F5H7E2 - symbol:SKIV2L2 "Superkiller viralicidi...   396  3.6e-59   3
UNIPROTKB|E2RCI5 - symbol:SKIV2L2 "Uncharacterized protei...   396  5.5e-59   3
UNIPROTKB|P42285 - symbol:SKIV2L2 "Superkiller viralicidi...   396  7.0e-59   3
FB|FBgn0001986 - symbol:l(2)35Df "lethal (2) 35Df" specie...   416  7.1e-59   3
ZFIN|ZDB-GENE-040426-2854 - symbol:skiv2l2 "superkiller v...   391  3.4e-57   3
UNIPROTKB|F1MAH7 - symbol:F1MAH7 "Uncharacterized protein...   374  4.4e-53   2
UNIPROTKB|Q10701 - symbol:helY "Probable helicase HelY" s...   524  4.0e-50   2
SGD|S000004390 - symbol:SKI2 "Ski complex component and p...   530  5.2e-49   2
ZFIN|ZDB-GENE-010430-5 - symbol:skiv2l "superkiller viral...   513  6.2e-44   2
UNIPROTKB|F5H7B0 - symbol:SKIV2L "Helicase SKI2W" species...   487  1.1e-42   2
UNIPROTKB|F8VS23 - symbol:SKIV2L "Helicase SKI2W" species...   487  1.1e-42   2
UNIPROTKB|F1RQW4 - symbol:SKIV2L "Uncharacterized protein...   491  1.1e-42   2
UNIPROTKB|B4DM01 - symbol:SKIV2L "cDNA FLJ57529, highly s...   487  1.3e-42   2
UNIPROTKB|F8VNU1 - symbol:SKIV2L "Helicase SKI2W" species...   487  1.3e-42   2
UNIPROTKB|Q15477 - symbol:SKIV2L "Helicase SKI2W" species...   487  2.4e-42   2
UNIPROTKB|E1BMS0 - symbol:LOC100139548 "Uncharacterized p...   485  4.0e-42   2
UNIPROTKB|F1LP39 - symbol:Skiv2l "Protein Skiv2l" species...   485  4.4e-42   2
RGD|1303059 - symbol:Skiv2l "superkiller viralicidic acti...   485  5.0e-42   2
UNIPROTKB|E2RSD6 - symbol:SKIV2L "Uncharacterized protein...   485  5.1e-42   2
UNIPROTKB|F1N993 - symbol:F1N993 "Uncharacterized protein...   317  7.8e-42   3
CGD|CAL0003794 - symbol:orf19.1335 species:5476 "Candida ...   447  3.2e-41   2
TAIR|locus:2075566 - symbol:AT3G46960 species:3702 "Arabi...   477  9.5e-40   2
UNIPROTKB|G4NH56 - symbol:MGG_03931 "FRQ-interacting RNA ...   431  1.9e-39   3
ASPGD|ASPL0000070749 - symbol:mtr4 species:162425 "Emeric...   442  2.3e-39   2
FB|FBgn0039117 - symbol:tst "twister" species:7227 "Droso...   442  9.5e-39   2
DICTYBASE|DDB_G0277211 - symbol:DDB_G0277211 "superkiller...   453  6.2e-38   2
SGD|S000003586 - symbol:MTR4 "ATP-dependent 3'-5' RNA hel...   426  1.0e-37   2
POMBASE|SPAC17H9.02 - symbol:SPAC17H9.02 "TRAMP complex A...   437  2.0e-35   3
GENEDB_PFALCIPARUM|PFF0100w - symbol:PFF0100w "putative A...   434  5.9e-35   2
POMBASE|SPAC6F12.16c - symbol:mtr4 "ATP-dependent RNA hel...   404  6.3e-35   2
UNIPROTKB|D4AE49 - symbol:D4AE49 "Uncharacterized protein...   268  1.9e-27   2
UNIPROTKB|F5H6Y7 - symbol:SKIV2L "Helicase SKI2W" species...   336  1.9e-26   2
POMBASE|SPAC694.02 - symbol:SPAC694.02 "DEAD/DEAH box hel...   185  3.4e-24   4
UNIPROTKB|G4MUH1 - symbol:MGG_07250 "DEAD/DEAH box helica...   195  3.7e-23   4
WB|WBGene00016194 - symbol:C28H8.3 species:6239 "Caenorha...   195  2.6e-21   5
DICTYBASE|DDB_G0278827 - symbol:DDB_G0278827 "Probable AT...   196  7.0e-21   5
WB|WBGene00021905 - symbol:helq-1 species:6239 "Caenorhab...   200  9.3e-21   2
UNIPROTKB|J9P0M0 - symbol:DDX60 "Uncharacterized protein"...   194  2.8e-20   2
UNIPROTKB|E2QSY2 - symbol:DDX60 "Uncharacterized protein"...   194  2.8e-20   2
RGD|1560014 - symbol:Ddx60 "DEAD (Asp-Glu-Ala-Asp) box po...   184  1.7e-19   3
SGD|S000003503 - symbol:SLH1 "Putative RNA helicase relat...   189  4.3e-19   3
UNIPROTKB|G4N3Z7 - symbol:MGG_05900 "Uncharacterized prot...   190  1.6e-18   2
SGD|S000000974 - symbol:BRR2 "RNA-dependent ATPase RNA he...   168  7.2e-18   3
UNIPROTKB|Q5H9U9 - symbol:DDX60L "Probable ATP-dependent ...   191  9.1e-18   2
CGD|CAL0003134 - symbol:orf19.3980 species:5476 "Candida ...   188  1.4e-17   3
ZFIN|ZDB-GENE-060503-421 - symbol:helq "helicase, POLQ-li...   171  1.5e-17   2
CGD|CAL0001532 - symbol:orf19.3098 species:5476 "Candida ...   183  2.6e-17   3
UNIPROTKB|Q8IY21 - symbol:DDX60 "Probable ATP-dependent R...   176  6.8e-17   3
FB|FBgn0038344 - symbol:CG5205 species:7227 "Drosophila m...   174  9.6e-17   3
UNIPROTKB|J9P160 - symbol:HELQ "Uncharacterized protein" ...   163  1.6e-16   2
UNIPROTKB|E2RST3 - symbol:HELQ "Uncharacterized protein" ...   163  1.7e-16   2
UNIPROTKB|F1NYH9 - symbol:HELQ "Uncharacterized protein" ...   167  2.1e-16   2
RGD|1584010 - symbol:Hfm1 "HFM1, ATP-dependent DNA helica...   175  2.3e-16   3
MGI|MGI:2176740 - symbol:Helq "helicase, POLQ-like" speci...   163  2.6e-16   2
DICTYBASE|DDB_G0279107 - symbol:DDB_G0279107 "Helicase PO...   157  3.4e-16   3
ASPGD|ASPL0000044033 - symbol:AN2482 species:162425 "Emer...   160  4.4e-16   2
DICTYBASE|DDB_G0290389 - symbol:ascc3 "activating signal ...   163  7.6e-16   4
SGD|S000003220 - symbol:HFM1 "Meiosis specific DNA helica...   159  8.9e-16   2
GENEDB_PFALCIPARUM|PF14_0370 - symbol:PF14_0370 "RNA heli...   151  1.4e-15   3
UNIPROTKB|Q8IL78 - symbol:PF14_0370 "DEAD/DEAH box helica...   151  1.4e-15   3
POMBASE|SPBC13G1.10c - symbol:mug81 "ATP-dependent RNA he...   163  1.5e-15   3
UNIPROTKB|E9PSY5 - symbol:Helq "Protein Helq" species:101...   158  1.8e-15   2
UNIPROTKB|E9PT19 - symbol:Helq "Protein Helq" species:101...   157  2.9e-15   2
POMBASE|SPAC9.03c - symbol:brr2 "U5 snRNP complex subunit...   162  3.5e-15   2
RGD|1309795 - symbol:Polq "polymerase (DNA directed), the...   175  4.0e-15   4
UNIPROTKB|D4A628 - symbol:Polq "Polymerase (DNA directed)...   175  4.1e-15   4
UNIPROTKB|F1NMU1 - symbol:POLQ "Uncharacterized protein" ...   164  8.9e-15   3
UNIPROTKB|G4N5J1 - symbol:MGG_06124 "Activating signal co...   156  1.8e-14   3
UNIPROTKB|F1S4E9 - symbol:HFM1 "Uncharacterized protein" ...   158  1.9e-14   3
FB|FBgn0002899 - symbol:mus301 "mutagen-sensitive 301" sp...   178  2.1e-14   2
UNIPROTKB|F1RVE2 - symbol:HELQ "Uncharacterized protein" ...   159  2.7e-14   2
FB|FBgn0002905 - symbol:mus308 "mutagen-sensitive 308" sp...   154  3.2e-14   4
UNIPROTKB|Q8TDG4 - symbol:HELQ "Helicase POLQ-like" speci...   161  4.9e-14   3
UNIPROTKB|F1RIW4 - symbol:DDX60 "Uncharacterized protein"...   194  4.9e-14   2
TAIR|locus:2059969 - symbol:AT2G42270 species:3702 "Arabi...   155  6.2e-14   4
UNIPROTKB|E2RA34 - symbol:HFM1 "Uncharacterized protein" ...   159  9.9e-14   3
UNIPROTKB|E2R5U9 - symbol:HFM1 "Uncharacterized protein" ...   159  1.1e-13   3
TAIR|locus:2125677 - symbol:AT4G32700 species:3702 "Arabi...   205  1.2e-13   4
UNIPROTKB|F1SU44 - symbol:F1SU44 "Uncharacterized protein...   163  1.5e-13   2
UNIPROTKB|A2PYH4 - symbol:HFM1 "Probable ATP-dependent DN...   160  1.6e-13   3
MGI|MGI:1925237 - symbol:Ascc3 "activating signal cointeg...   153  2.1e-13   3
ASPGD|ASPL0000051297 - symbol:AN10194 species:162425 "Eme...   163  3.1e-13   3
UNIPROTKB|F1MFR1 - symbol:HFM1 "Uncharacterized protein" ...   153  3.3e-13   3
RGD|1307995 - symbol:Ascc3 "activating signal cointegrato...   152  5.3e-13   3
UNIPROTKB|F1NTD6 - symbol:ascc3 "Activating signal cointe...   154  5.3e-13   3
WB|WBGene00012896 - symbol:snrp-200 species:6239 "Caenorh...   165  7.2e-13   3
UNIPROTKB|Q9U2G0 - symbol:Y46G5A.4 "Putative U5 small nuc...   165  7.2e-13   3

WARNING:  Descriptions of 33 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2020573 [details] [associations]
            symbol:EMB25 "EMBRYO DEFECTIVE 25" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0016818 "hydrolase activity, acting on acid
            anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0009793 "embryo development ending in seed dormancy"
            evidence=IMP] [GO:0010497 "plasmodesmata-mediated intercellular
            transport" evidence=NAS;IMP] [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=IDA] [GO:0016441 "posttranscriptional gene silencing"
            evidence=IMP] [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0016556 "mRNA modification" evidence=RCA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08148 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0009570 GO:GO:0003676
            GO:GO:0009793 GO:GO:0031047 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0010494 GO:GO:0008026 EMBL:AC002062
            GO:GO:0003724 GO:GO:0010497 eggNOG:COG4581 GO:GO:0016441
            HOGENOM:HOG000245391 EMBL:AK316759 EMBL:AF387007 IPI:IPI00538730
            PIR:D96723 RefSeq:NP_177164.1 UniGene:At.35348
            ProteinModelPortal:B9DFG3 SMR:B9DFG3 PaxDb:B9DFG3 PRIDE:B9DFG3
            EnsemblPlants:AT1G70070.1 GeneID:843343 KEGG:ath:AT1G70070
            GeneFarm:2280 TAIR:At1g70070 InParanoid:Q94EZ6 OMA:PSYGMVL
            PhylomeDB:B9DFG3 ProtClustDB:CLSN2682754 Genevestigator:B9DFG3
            Uniprot:B9DFG3
        Length = 1171

 Score = 3904 (1379.3 bits), Expect = 0., P = 0.
 Identities = 777/1176 (66%), Positives = 920/1176 (78%)

Query:    12 TFPVFANTKPFSFHQFH------TLSHTLGFCIPKPL-LSSNSIQFQASYKSPKSFFPTE 64
             T PV + T   SF  FH      +LSH+  F   K L L+ N + F+++  S     P++
Sbjct:     3 TLPVVSLTASSSFKFFHFPSLHRSLSHSPNFSFTKSLILNPNHLSFKSTLNS---LSPSQ 59

Query:    65 HKLTXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGEVSDEIQQXXXXXXXXXXXXPAPSWR 124
              +L                            +S E+ +                P  S R
Sbjct:    60 SQL--YEEEDDEEEEEEDEDDDDEAADEYDNISDEIRNSDDDDDDEETEFSVDLPTESAR 117

Query:   125 E--EFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAP 182
             E  EF+WQRVEKL + V++FG EMID+DEL SIYDFRIDKFQR +IEAFLRGSSVVVSAP
Sbjct:   118 ERVEFRWQRVEKLRSLVRDFGVEMIDIDELISIYDFRIDKFQRLAIEAFLRGSSVVVSAP 177

Query:   183 TSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINR 242
             TSSGKTLI            RR+FYTTPLKALSNQKFREFRETFGD+NVGLLTGDSAIN+
Sbjct:   178 TSSGKTLIAEAAAVSTVAKGRRLFYTTPLKALSNQKFREFRETFGDDNVGLLTGDSAINK 237

Query:   243 EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP 302
             +AQI+IMTTEILRNMLYQSVGM SS +GLF VD IVLDEVHYLSDISRGTVWEEI+IYCP
Sbjct:   238 DAQIVIMTTEILRNMLYQSVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEIVIYCP 297

Query:   303 KEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK 362
             KEVQ+ICLSATVAN DELAGWIG+IHGKTEL+TS+RRPVPLTWYFSTK +LLPLLDEKG 
Sbjct:   298 KEVQLICLSATVANPDELAGWIGEIHGKTELVTSTRRPVPLTWYFSTKHSLLPLLDEKGI 357

Query:   363 HMNRKLSLNYLQLSTSEVKPYKDG--GSRRRNSRKHA-DMNSNNIVTSFGQHQLSKNSIN 419
             ++NRKLSLNYLQLS SE + ++D   G R+R S+K   D + NN+V +   + LSKN IN
Sbjct:   358 NVNRKLSLNYLQLSASEAR-FRDDDDGYRKRRSKKRGGDTSYNNLV-NVTDYPLSKNEIN 415

Query:   420 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL 479
              IRRSQVPQ+ DTLWHL+ ++MLPAIWFIFNRRGCDAAVQY+E+  LLD+CE SEVELAL
Sbjct:   416 KIRRSQVPQISDTLWHLQGKNMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELAL 475

Query:   480 KRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 539
             K+FR+LYPDAVRE A KGLL+G+AAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGI
Sbjct:   476 KKFRVLYPDAVRESAEKGLLRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGI 535

Query:   540 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 599
             NMPARTAV+SSLSK+  + RI+L  NEL+QMAGRAGRRGID +G+ VLVQT +EGAEECC
Sbjct:   536 NMPARTAVISSLSKKAGNERIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECC 595

Query:   600 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 659
             KL+FAGV+PLVSQFTASYGMVLNL+AG+KV   S+ ++  K LQAGRSLEEA+KLVE+SF
Sbjct:   596 KLVFAGVKPLVSQFTASYGMVLNLVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKLVEKSF 655

Query:   660 GNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKA 719
             GNYV SNV +AAK EL +I  + ++L+SEISD+AID+KSR+LLS   YKE+  L+EEL+ 
Sbjct:   656 GNYVSSNVTVAAKQELAEIDNKIEILSSEISDEAIDKKSRKLLSARDYKEITVLKEELRE 715

Query:   720 EKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSL 779
             EKR R E RRRMEL+RF ALK +LK  E G+LPF+CL++KDSEG E SVPAVYLG  DS 
Sbjct:   716 EKRKRAEQRRRMELERFLALKPLLKGMEEGNLPFICLEFKDSEGREQSVPAVYLGHIDSF 775

Query:   780 DSSKLKNMASINDSFALNRLAQS-NGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVY 838
               SKL+ M S+++SFALN +      D+    +VKPSYYVALGSDN+WY FTEKW++TVY
Sbjct:   776 QGSKLQKMMSLDESFALNLIEDELAADEPGKPNVKPSYYVALGSDNSWYLFTEKWVRTVY 835

Query:   839 RIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPX 898
             R GFPN+ALA GDALPRE M  LLDK +M W+KLA+SE G LW +EGSLETWSWSLNVP 
Sbjct:   836 RTGFPNIALALGDALPREIMKNLLDKADMQWDKLAESELGSLWRLEGSLETWSWSLNVPV 895

Query:   899 XXXXXXXXXXXHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEK 958
                        HMS EY +A + YKEQR+K++RLKKK++R+EGF+EYKKI++    T EK
Sbjct:   896 LSSLSDEDEVLHMSEEYDNAAQKYKEQRSKISRLKKKMSRSEGFREYKKILENANLTVEK 955

Query:   959 IKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGEN 1018
             +KRLKARS+RL  R+EQIEPSGWK+F+RISNVIHE+RALDINT +IFPLGETAAAIRGEN
Sbjct:   956 MKRLKARSRRLINRLEQIEPSGWKDFMRISNVIHESRALDINTHLIFPLGETAAAIRGEN 1015

Query:  1019 ELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDE 1078
             ELWLAMVLRNK L+DLKP QLA VCASLVSEGIKVR W++N+ IYEPS TV++++N L++
Sbjct:  1016 ELWLAMVLRNKALVDLKPPQLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFLED 1075

Query:  1079 HRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMXXXXXXXXXXXXXXXTID 1138
              RSS ++LQEKH V IPCCLD QFSGMVEAWASGL+W+EMMM               TID
Sbjct:  1076 QRSSLIKLQEKHEVMIPCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTID 1135

Query:  1139 LLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG 1174
             LLAQIPKLPD+D  LQ++A  A+++MDRPPISELAG
Sbjct:  1136 LLAQIPKLPDIDPVLQRSAAAAADIMDRPPISELAG 1171


>CGD|CAL0002171 [details] [associations]
            symbol:orf19.6425 species:5476 "Candida albicans" [GO:0005829
            "cytosol" evidence=IEA] [GO:0055087 "Ski complex" evidence=IEA]
            [GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
            exonucleolytic nonsense-mediated decay" evidence=IEA] [GO:0070481
            "nuclear-transcribed mRNA catabolic process, non-stop decay"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
            CGD:CAL0002171 GO:GO:0005524 GO:GO:0003676 EMBL:AACQ01000073
            EMBL:AACQ01000072 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG4581 KO:K12599 RefSeq:XP_716180.1
            RefSeq:XP_716263.1 ProteinModelPortal:Q5A337 STRING:Q5A337
            GeneID:3642143 GeneID:3642220 KEGG:cal:CaO19.13783
            KEGG:cal:CaO19.6425 Uniprot:Q5A337
        Length = 1245

 Score = 753 (270.1 bits), Expect = 4.3e-75, Sum P(2) = 4.3e-75
 Identities = 203/582 (34%), Positives = 305/582 (52%)

Query:   129 WQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKT 188
             W  V  L +++++F  E+  V  +A  + F +D FQ+ ++    +G SV V+A TS+GKT
Sbjct:   262 WAHVVDLDHKIEDF-QEL--VPNMARTWPFELDTFQKEAVFHLEQGDSVFVAAHTSAGKT 318

Query:   189 LIXXXXXXXXXXNQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILI 248
             ++          N  +  YT+P+KALSNQKFR+F+ETF D +VGL+TGD  IN EA  LI
Sbjct:   319 VVAEYAIAMAHRNMTKCIYTSPIKALSNQKFRDFKETFKDIDVGLITGDVQINPEANCLI 378

Query:   249 MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQII 308
             MTTEILR+MLY+   ++       DV+ ++ DEVHY++DI RG VWEE+II  P  V+ I
Sbjct:   379 MTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPDHVKYI 432

Query:   309 CLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRK 367
              LSATV N  E A W+G+   K   +I++ +RPVPL  + S K  L  ++D   +    +
Sbjct:   433 LLSATVPNTFEFANWVGRTKQKDIYVISTPKRPVPLEIFVSAKNQLFKVVDANRRFQENE 492

Query:   368 LSLNYLQLSTSEVK---PYKDGGSRRRNSRKHADMNSNNIVTSF--GQHQ---LSKNSIN 419
                +   L     K   P    GS  R          N        GQ +    ++ + +
Sbjct:   493 FRKHKDLLEGGGKKNELPSTTMGSGSRGGPGGTARGGNRGGRGGRGGQGRGGNANRGNFS 552

Query:   420 AIRR--SQVPQV---IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE 474
               +R     P+    ID + +++S ++LPA+ F+F+++ C+     L   +  +  E SE
Sbjct:   553 GPKRFGRDGPKKNTWIDLVNYMKSNNLLPAVVFVFSKKRCEEYADSLRSVDFNNAREKSE 612

Query:   475 VELALKRF--RILYPDAVRE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVK 527
             + + + R   R+   D  RE P I   + +L +G+A HH G LPI K  IE LF + LVK
Sbjct:   613 IHMFIDRAVGRLKKED--RELPQILKIREMLGRGIAVHHGGLLPIVKECIEILFAKSLVK 670

Query:   528 VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL 587
             V+FATET A G+N+P RT + SS+ K        L   E  QM+GRAGRRG+D  G V++
Sbjct:   671 VLFATETFAMGLNLPTRTVIFSSMRKHDGRSFRNLLPGEFTQMSGRAGRRGLDKTGTVIV 730

Query:   588 VQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNLLA--GAKVMHLSNESDDMKALQA 644
             +      +    K +  G    L SQF  +Y M+LNLL     KV  +   S    + Q 
Sbjct:   731 MAYDDPLSPTDFKEVVLGTPTKLSSQFRLTYSMILNLLRIEALKVEEMIKHSFSENSTQV 790

Query:   645 GRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLT 686
                L E +K  ++       S +   +K  L   ++  ++LT
Sbjct:   791 --LLPENQKRYDEIKKQLQSSTITPCSKCSLEGTEETCNLLT 830

 Score = 74 (31.1 bits), Expect = 4.3e-75, Sum P(2) = 4.3e-75
 Identities = 26/117 (22%), Positives = 53/117 (45%)

Query:  1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 1067
             G  A  +    EL +  ++ N  L D +PA++ A+ +  V EG   R  +    +  P  
Sbjct:  1073 GRVACEVNSGWELIITELVLNNFLGDFEPAEIVALLSCFVYEG---RTQEEEPPLITPRL 1129

Query:  1068 TV--INVINVLDEHRSSFLELQEKHGVEIPCCLDSQ---FSGMVEAWASGLTWREMM 1119
                   ++ + ++    ++E Q     E    ++S+    + +V  WA+GL++ E+M
Sbjct:  1130 EKGKAKILEIAEKLLKVYVEKQVSLTSEEEDFVESKRFALANVVYEWANGLSFNEIM 1186

 Score = 38 (18.4 bits), Expect = 2.7e-71, Sum P(2) = 2.7e-71
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query:  1146 LPDVDQRLQKNAVDASNVMD 1165
             LPD +QRLQ   ++A   +D
Sbjct:  1047 LPDYEQRLQ--VLEAMGYID 1064


>POMBASE|SPCC550.03c [details] [associations]
            symbol:SPCC550.03c "Ski complex RNA helicase Ski2
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase activity"
            evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0006402 "mRNA catabolic
            process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0055087 "Ski complex" evidence=ISO]
            [GO:0071276 "cellular response to cadmium ion" evidence=IMP]
            [GO:0071585 "detoxification of cadmium ion" evidence=IMP]
            [GO:2000765 "regulation of cytoplasmic translation" evidence=ISO]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
            InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
            PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC550.03c
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:2000765
            EMBL:CU329672 GO:GO:0071276 GO:GO:0071585 GO:GO:0003723
            GO:GO:0006402 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 GO:GO:0003724 eggNOG:COG4581 GO:GO:0055087 PIR:T41378
            RefSeq:NP_588095.1 ProteinModelPortal:O59801 STRING:O59801
            EnsemblFungi:SPCC550.03c.1 GeneID:2538841 KEGG:spo:SPCC550.03c
            HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
            NextBio:20800023 Uniprot:O59801
        Length = 1213

 Score = 766 (274.7 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
 Identities = 178/486 (36%), Positives = 267/486 (54%)

Query:   149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYT 208
             V E+A  + F +D FQ+ +I     G SV V+A TS+GKT++          +  +  YT
Sbjct:   270 VPEMALDFPFELDNFQKEAIYHLEMGDSVFVAAHTSAGKTVVAEYAIALAQKHMTKAIYT 329

Query:   209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
             +P+KALSNQKFR+F+  F D  VG+LTGD  +N E   L+MTTEILR+MLY+   ++   
Sbjct:   330 SPIKALSNQKFRDFKHKFED--VGILTGDVQVNPEGSCLLMTTEILRSMLYRGADLIR-- 385

Query:   269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
                 DV+ ++ DEVHY++D+ RG VWEE+II  P  V +I LSATV N  E A W+G+  
Sbjct:   386 ----DVEFVIFDEVHYVNDLERGVVWEEVIIMLPPHVTLILLSATVPNTKEFASWVGRTK 441

Query:   329 GKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD-- 385
              K   + S+ +RPVPL  Y   K  +  ++D+ G    R L   Y   + +  KP K   
Sbjct:   442 KKNIYVISTLKRPVPLEHYLWVKQNMFKIVDQHG----RFLMDGYKSANDALKKPDKPVI 497

Query:   386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
                 + ++R         + T+  +    + S  ++ R      +  + HL  +++LP I
Sbjct:   498 AKDNKNSARGRGAARGRGVQTNMMR---GRGSAKSVERRDANTWVHLIGHLHKQNLLPVI 554

Query:   446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF--RILYPDAVREPAI----KGLL 499
              F+F+++ C+  V  L + +L +  E SEV + +++   R+   D +  P I    + L 
Sbjct:   555 VFVFSKKRCEEYVDTLTNRDLNNHQEKSEVHVVIEKAVARLKKEDRLL-PQIGRMREMLS 613

Query:   500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
             +G+A HH G LPI K  +E LFQRGLVKV+FATET A G+NMPA++ V S   K      
Sbjct:   614 RGLAVHHGGLLPIIKEIVEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDGRNF 673

Query:   560 IQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
               L   E  Q +GRAGRRG+D  G V+++ ++          ++      L+SQF  +Y 
Sbjct:   674 RDLLPGEYTQCSGRAGRRGLDVTGTVIILSRSELPDTASLRHMIMGPSSKLISQFRLTYN 733

Query:   619 MVLNLL 624
             M+LNLL
Sbjct:   734 MILNLL 739

 Score = 54 (24.1 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
 Identities = 12/56 (21%), Positives = 29/56 (51%)

Query:   654 LVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKE 709
             ++++SF   V   ++   ++++   +++   L  E+SD  +      LLS  ++KE
Sbjct:   749 MIKRSFSENVNQTLVPQHEEKIKSFEEKLSALKKEMSDVDLKEIKSCLLSSESFKE 804

 Score = 41 (19.5 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query:   912 SFEYHDAVENYKEQRTKV--ARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRL 962
             SFE  + +   K++ + V    +K  +  +E FKEY K +     T    KR+
Sbjct:   772 SFE--EKLSALKKEMSDVDLKEIKSCLLSSESFKEYTKKMHFRAITTANGKRI 822

 Score = 41 (19.5 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
 Identities = 37/194 (19%), Positives = 76/194 (39%)

Query:   693 AIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGH-L 751
             + + K   L  E +  ++  ++  L + + F+ E  ++M  +  +      + F++G  +
Sbjct:   772 SFEEKLSALKKEMSDVDLKEIKSCLLSSESFK-EYTKKMHFRAITTANG-KRIFKDGRVI 829

Query:   752 PFLCLQYKDSEGVEHSVPAVYLGKFD-SLDSSKLKNMASINDSFALNRLAQSNGDDYDTQ 810
              F  L +  + GV     ++     D +L+ + L    ++     L   A +  D YD  
Sbjct:   830 VFQQLDFTRTVGVLLGT-SIRTNASDCTLEVAYLNPQNNLKRPSDLLAFADAFNDVYDNA 888

Query:   811 DVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPR--ETMSLLLDKGEML 868
                 S     G  N   +  E+   T+ RI    +   +G A  +  E  + +    ++L
Sbjct:   889 IFDESNQFKYGLINL--SGIERVCNTILRIDSGGIRDRRGGAFRKLSEQFASIKKFSDLL 946

Query:   869 -----WEKLADSEF 877
                  W K+ D EF
Sbjct:   947 FEEVNWSKVRDFEF 960

 Score = 40 (19.1 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
 Identities = 19/69 (27%), Positives = 29/69 (42%)

Query:   926 RTKVARLKKKIARTEGFKEYKKIVDT-VKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEF 984
             R +  R++  I R+  F E   +  T V   EEKIK  + +   L K +  ++    K  
Sbjct:   740 RVETLRIEDMIKRS--FSE--NVNQTLVPQHEEKIKSFEEKLSALKKEMSDVDLKEIKSC 795

Query:   985 LRISNVIHE 993
             L  S    E
Sbjct:   796 LLSSESFKE 804


>WB|WBGene00008502 [details] [associations]
            symbol:skih-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
            anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0016817 "hydrolase activity, acting on acid anhydrides"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 EMBL:Z68341
            HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC
            GeneTree:ENSGT00690000102154 PIR:T20487 RefSeq:NP_502084.2
            ProteinModelPortal:Q19103 SMR:Q19103 STRING:Q19103 PaxDb:Q19103
            EnsemblMetazoa:F01G4.3 GeneID:178017 KEGG:cel:CELE_F01G4.3
            UCSC:F01G4.3 CTD:178017 WormBase:F01G4.3 InParanoid:Q19103
            NextBio:899374 Uniprot:Q19103
        Length = 1266

 Score = 769 (275.8 bits), Expect = 6.6e-74, Sum P(2) = 6.6e-74
 Identities = 234/697 (33%), Positives = 355/697 (50%)

Query:   124 REEFKW-QRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAP 182
             +E+F++ QR+    +E  E+      V  +A  Y F +D FQ+SS+    RG S+ V+A 
Sbjct:   259 KEKFEFAQRLVLSADEEDEYKRL---VPTMARKYPFSLDPFQQSSVLCMERGESLFVAAH 315

Query:   183 TSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINR 242
             TS+GKT++          ++ R  YT+P+KALSNQKFR+F++ FGD  VGL+TGD  ++ 
Sbjct:   316 TSAGKTVVAEYAIALCQAHKTRAVYTSPIKALSNQKFRDFKQIFGD--VGLVTGDIQLHP 373

Query:   243 EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP 302
             EA  LIMTTEILR+MLY    ++       D++ +V DEVHY+++  RG VWEE++I  P
Sbjct:   374 EAACLIMTTEILRSMLYNGSEVIR------DLEWVVFDEVHYINNEERGHVWEEVLIMLP 427

Query:   303 KEVQIICLSATVANADELAGWIGQIHG-KTELITSSRRPVPLTWYFST----KTA--LLP 355
               V+I+ LSATV N  E A W+G+I   K  +I++ RRPVPL  +  T    KT   L  
Sbjct:   428 AHVKIVMLSATVPNCVEFADWVGRIKNRKINVISTDRRPVPLEHFLYTGQDGKTQKDLFK 487

Query:   356 LLDEKGKHMNRKLSLNYLQLSTSEVKPY---KDGGSRRRNSRKHADMNSNNIVTSFGQHQ 412
             ++D  G+ + +     Y     S+ K Y   K GG+  R +++             G++ 
Sbjct:   488 IIDRSGQFILK----GYNDAKDSKAKIYEKEKAGGAGGRGTQRGGGRGGGG--NGGGRNW 541

Query:   413 LSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEM 472
               KN  N          ++ + +++  D LP + F+F+R+ CD   Q L   NL  E E 
Sbjct:   542 PGKNDKNIY--------LNLINYMKCSDQLPMVVFVFSRKRCDENAQMLASMNLTTEVEK 593

Query:   473 SEVEL----ALKRFRILYPDAVREPAIKGL-LKGVAAHHAGCLPIWKSFIEELFQRGLVK 527
               V L     ++R +    +  +   ++ L L+G A HH+G LPI K  +E LFQ+G VK
Sbjct:   594 QHVRLFFSQCVQRLKGSDKELPQVLTMRDLCLRGFAVHHSGILPILKEVVELLFQKGYVK 653

Query:   528 VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL 587
             ++FATET A G+NMPAR  V  S+ K   + R  L   E  QMAGRAGRRG+D  G V++
Sbjct:   654 ILFATETFAMGVNMPARCVVFDSIMKHDGTERRMLNPGEYTQMAGRAGRRGLDLTGTVII 713

Query:   588 V-QTPYEGAEECCKLLFAGVE-PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAG 645
             + +       +  K L +G    L S+F  +Y M+LNLL   +V  L  E  DM  LQ  
Sbjct:   714 ICKDSTVPQPDVLKNLISGQALRLESKFRVTYSMILNLL---RVEQLKIE--DM--LQ-- 764

Query:   646 RSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISD--DAIDRKSRRLLS 703
             RS  E+  L E         +   A +  +  I+  T    S++ D  DA+    R+  S
Sbjct:   765 RSYVESDSLRESKEKRKSLVDTKNAIQT-MSTIECSTCSPNSQLRDYHDALAVFLRK--S 821

Query:   704 EAAYKEM--ANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDS 761
             E  + ++   N+  +L    RF      + +L+    L  ++K+  N  L  L       
Sbjct:   822 EHIWPKLNDENVINKLLCSGRFLIVNSAQQQLQNECVL--LIKELNNKTLQILVASADAD 879

Query:   762 EGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNR 798
             E    +  A+  G F  L  S+L  +   N   + ++
Sbjct:   880 ETTNKNAAAI--G-FSKLPKSELSWLTEENSLLSTSK 913

 Score = 44 (20.5 bits), Expect = 6.6e-74, Sum P(2) = 6.6e-74
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query:   939 TEGFKEYKKIVDTVKFTEEKIKRLKAR 965
             +E +    K+++ + F E+K+  LK R
Sbjct:  1072 SEEYHNRLKVLEALNFVEQKMVSLKGR 1098

 Score = 39 (18.8 bits), Expect = 2.2e-73, Sum P(2) = 2.2e-73
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query:   920 ENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLK 963
             E++   R ++ R+++KI   E   EY+   D +  +EE   RLK
Sbjct:  1042 EHFSVLRDRI-RIERKI---ESL-EYELSSDALLLSEEYHNRLK 1080


>ASPGD|ASPL0000004985 [details] [associations]
            symbol:AN6007 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
            InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
            PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:BN001301 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:AACD01000102 GO:GO:0008026 eggNOG:COG4581
            HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
            RefSeq:XP_663611.1 ProteinModelPortal:Q5B0C3 STRING:Q5B0C3
            EnsemblFungi:CADANIAT00007011 GeneID:2871132 KEGG:ani:AN6007.2
            Uniprot:Q5B0C3
        Length = 1293

 Score = 463 (168.0 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
 Identities = 96/220 (43%), Positives = 139/220 (63%)

Query:   128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
             +W  V  +  E+  F +E+  V ++A  + F +D FQ+ ++     G SV V+A TS+GK
Sbjct:   294 EWAHVVDVNKEISNF-HEL--VPDMAREWPFELDTFQKEAVYHLENGDSVFVAAHTSAGK 350

Query:   188 TLIXXXXXXXXXXNQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
             T++          +  +  YT+P+KALSNQKFR+F+ TF D  VG+LTGD  IN EA  L
Sbjct:   351 TVVAEYAIALAAKHMTKAIYTSPIKALSNQKFRDFKNTFDD--VGILTGDVQINPEASCL 408

Query:   248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
             IMTTEILR+MLY+   ++       DV+ ++ DEVHY++D+ RG VWEE+II  P+ V +
Sbjct:   409 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTL 462

Query:   308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWY 346
             I LSATV N  E A W+G+   K   +I++++RPVPL  Y
Sbjct:   463 ILLSATVPNTQEFASWVGRTKKKDIYVISTAKRPVPLEHY 502

 Score = 341 (125.1 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
 Identities = 88/241 (36%), Positives = 127/241 (52%)

Query:   430 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF--RILYP 487
             +  + HLR  ++LPA  F+F+++ C+     L + +  +  E S + + +++   R+   
Sbjct:   616 VQVVQHLRKENLLPACIFVFSKKRCEQNADSLSNQDFCNASEKSLIHITIEKSLTRLKQE 675

Query:   488 DAVREPAIK--GLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 544
             D      ++   LL +G+A HH G LPI K  +E LF + LVKV+FATET A G+N+P R
Sbjct:   676 DRTLPQILRLRELLSRGIAVHHGGLLPIMKEIVEILFAKTLVKVLFATETFAMGLNLPTR 735

Query:   545 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-----QTPYEGAEECC 599
             T V S   K    G   L   E  QMAGRAGRRG+DN G+V++V     + P  GA    
Sbjct:   736 TVVFSGFRKHDGKGFRDLLPGEYTQMAGRAGRRGLDNVGYVIVVNSGKDEAPPAGALR-- 793

Query:   600 KLLFAGVEPLVSQFTASYGMVLNLLA--GAKVMHLSNESDDMKALQAGRSLEEARKLVEQ 657
             K++      L SQF  +Y M+LNLL     K+  +   S    A QA   L E  K V+ 
Sbjct:   794 KMILGDPTKLRSQFRLTYNMILNLLRVEALKIEEMIKRSFSENATQA--LLPEHEKQVQI 851

Query:   658 S 658
             S
Sbjct:   852 S 852

 Score = 37 (18.1 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
 Identities = 14/65 (21%), Positives = 27/65 (41%)

Query:   462 EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 521
             E  N+   C+  +    LK F +   +   +  I  L + ++  +   LP ++  I+ L 
Sbjct:  1048 EQANIAQSCDCLKCPKFLKHFEMQRDEWQIKENISQLKQLMSDQNLQLLPDYEQRIQVLK 1107

Query:   522 QRGLV 526
               G V
Sbjct:  1108 DLGFV 1112


>DICTYBASE|DDB_G0275633 [details] [associations]
            symbol:DDB_G0275633 "superkiller viralicidic activity
            2-like protein" species:44689 "Dictyostelium discoideum"
            [GO:0016818 "hydrolase activity, acting on acid anhydrides, in
            phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
            "hydrolase activity, acting on acid anhydrides" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275633 GO:GO:0005524
            GO:GO:0003676 EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 KO:K12598 OMA:ENFQKAM
            InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_643574.1
            ProteinModelPortal:Q86IE2 STRING:Q86IE2 EnsemblProtists:DDB0233453
            GeneID:8620161 KEGG:ddi:DDB_G0275633 InParanoid:Q86IE2
            ProtClustDB:CLSZ2444279 Uniprot:Q86IE2
        Length = 1128

 Score = 452 (164.2 bits), Expect = 2.3e-66, Sum P(3) = 2.3e-66
 Identities = 105/256 (41%), Positives = 145/256 (56%)

Query:   153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLK 212
             A  Y F++D FQ +SI    R  SV+VSA TS+GKT++          + +R+ YT+P+K
Sbjct:   205 ARTYPFKLDPFQATSIACIERNESVLVSAHTSAGKTVVAEYSIATALRDGQRVIYTSPIK 264

Query:   213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
             ALSNQKFR+ +ETF D  VGL+TGD  IN  A  L+MTTEILR+MLY+      SE+ + 
Sbjct:   265 ALSNQKFRDLQETFQD--VGLMTGDITINANASCLVMTTEILRSMLYRG-----SET-MR 316

Query:   273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
             +V  ++ DE+HYL D  RG VWEE II  P  V+ + LSAT+ NA E A WI +IH +  
Sbjct:   317 EVSWVIFDEIHYLRDKERGVVWEETIILLPDSVKFVFLSATIPNAREFAAWIAKIHKQPC 376

Query:   332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
              ++ +  RP+PL  Y   S    L  ++DE G         +   L   E+   + G SR
Sbjct:   377 HVVYTEYRPIPLQHYIFPSGGDGLHLVVDENGVFREENFLKSLSNLQQPEMGG-QSGASR 435

Query:   390 RRNSRKHADMNSNNIV 405
             +R        +   IV
Sbjct:   436 KRGGGNKGPSDCYKIV 451

 Score = 289 (106.8 bits), Expect = 2.3e-66, Sum P(3) = 2.3e-66
 Identities = 70/196 (35%), Positives = 106/196 (54%)

Query:   436 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PA 494
             +  R+  P I F F+++ C+     +   +  ++ E + VE           ++ ++ PA
Sbjct:   454 IMERNYQPVIIFSFSKKECETYALQMSKLDFNNDDEKNAVETIFNNAIDSLSESDKQLPA 513

Query:   495 IKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
             +  +L    +G+  HHAG LPI K  IE LFQ G +K +FATET + G+NMPA+T + +S
Sbjct:   514 VINILPLLKRGIGIHHAGLLPILKEIIEILFQYGYIKALFATETFSIGLNMPAKTVIFTS 573

Query:   551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL-VQTPYEGAEECCKLLFAG-VEP 608
             + K    G   ++  E  QM+GRAGRRG+D RG V+L V    E A    K +  G  + 
Sbjct:   574 VRKFDGEGMRWISGGEYIQMSGRAGRRGLDERGIVILMVDEKMEPA--IAKGMVKGQADR 631

Query:   609 LVSQFTASYGMVLNLL 624
             L S F   Y M+LN+L
Sbjct:   632 LTSSFWIGYSMLLNML 647

 Score = 74 (31.1 bits), Expect = 2.3e-66, Sum P(3) = 2.3e-66
 Identities = 47/207 (22%), Positives = 87/207 (42%)

Query:   921 NYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG 980
             N+K+   K+  L+ + + T  F +   I +     E+K   +    K+L K+I+  +   
Sbjct:   869 NFKKLIKKIETLESRFSSTACFND-TDIEERCNLLEKK-NEITKEIKQLQKQIKSGDEVI 926

Query:   981 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 1040
              K+ LR    I        +  V+   G  A  I   +EL ++ +L   +  DL   Q  
Sbjct:   927 LKDDLRSMKRILTRLGYITDDGVVALKGRVACEISAGDELVISELLFAGLFNDLSVEQCV 986

Query:  1041 AV--CASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEK---HGVEIP 1095
             AV  C    +EG       NN  I +P   ++ +  V+ +  S  + + ++     V+  
Sbjct:   987 AVFSCFVFQNEG-SANNDVNNPKI-KPD--LVPLYRVIRDTASKVVTVSQECKLTSVDEK 1042

Query:  1096 CCLDS---QFSGMVEAWASGLTWREMM 1119
               L S    F  +  AWASG ++ +++
Sbjct:  1043 TYLASFNPNFMDVTFAWASGASFADIV 1069


>TAIR|locus:2026001 [details] [associations]
            symbol:MTR4 "homolog of yeast MTR4" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0016817 "hydrolase activity, acting on acid
            anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
            on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=IMP]
            [GO:0031125 "rRNA 3'-end processing" evidence=IMP] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=RCA] [GO:0000724
            "double-strand break repair via homologous recombination"
            evidence=RCA] [GO:0000741 "karyogamy" evidence=RCA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
            "protein import into nucleus" evidence=RCA] [GO:0009560 "embryo sac
            egg cell differentiation" evidence=RCA] [GO:0009640
            "photomorphogenesis" evidence=RCA] [GO:0009909 "regulation of
            flower development" evidence=RCA] [GO:0010074 "maintenance of
            meristem identity" evidence=RCA] [GO:0010212 "response to ionizing
            radiation" evidence=RCA] [GO:0010388 "cullin deneddylation"
            evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
            [GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
            "protein deubiquitination" evidence=RCA] [GO:0030422 "production of
            siRNA involved in RNA interference" evidence=RCA] [GO:0035196
            "production of miRNAs involved in gene silencing by miRNA"
            evidence=RCA] [GO:0043687 "post-translational protein modification"
            evidence=RCA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=RCA] [GO:0048825 "cotyledon development"
            evidence=RCA] [GO:0051301 "cell division" evidence=RCA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
            InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
            PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
            EMBL:AC007258 UniGene:At.74832 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0031125 eggNOG:COG4581
            HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
            Pfam:PF13234 EMBL:AK176836 IPI:IPI00536033 PIR:E96621
            RefSeq:NP_176185.1 UniGene:At.43462 ProteinModelPortal:Q9XIF2
            SMR:Q9XIF2 PaxDb:Q9XIF2 PRIDE:Q9XIF2 EnsemblPlants:AT1G59760.1
            GeneID:842269 KEGG:ath:AT1G59760 TAIR:At1g59760 InParanoid:Q9XIF2
            PhylomeDB:Q9XIF2 ProtClustDB:CLSN2679700 ArrayExpress:Q9XIF2
            Genevestigator:Q9XIF2 Uniprot:Q9XIF2
        Length = 988

 Score = 431 (156.8 bits), Expect = 7.8e-65, Sum P(3) = 7.8e-65
 Identities = 100/240 (41%), Positives = 142/240 (59%)

Query:   153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLK 212
             A  + F +D FQ  +I+    G SV+VSA TS+GKT++            +R+ YT+P+K
Sbjct:    61 AKDFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSLKENQRVIYTSPIK 120

Query:   213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
             ALSNQK+R+F+E F D  VGL+TGD  I+  A  L+MTTEILR+M Y+      SE  + 
Sbjct:   121 ALSNQKYRDFKEEFSD--VGLMTGDVTIDPNASCLVMTTEILRSMQYKG-----SEI-MR 172

Query:   273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
             +V  I+ DEVHY+ D  RG VWEE I+  PK  + + LSATV NA E A W+ ++H +  
Sbjct:   173 EVAWIIFDEVHYMRDSERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPC 232

Query:   332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGK-HMNR-KLSLNYLQLSTSEVKPYKDGG 387
              ++ +  RP PL  Y   +    L  ++DEK K H +  + SLN L + T+E    +D G
Sbjct:   233 HIVYTDYRPTPLQHYVFPAGGNGLYLVVDEKSKFHEDSFQKSLNAL-VPTNESDKKRDNG 291

 Score = 295 (108.9 bits), Expect = 7.8e-65, Sum P(3) = 7.8e-65
 Identities = 82/224 (36%), Positives = 115/224 (51%)

Query:   443 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAIKGLL-- 499
             P I F F+++ C+A    +    L  + E   VE +      +L  D  + P +  +L  
Sbjct:   322 PVILFSFSKKECEALAMQMSKMVLNSDDEKDAVETIFASAIDMLSDDDKKLPQVSNILPI 381

Query:   500 --KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
               +G+  HH+G LPI K  IE LFQ GL+K +FATET + G+NMPA+T V +++ K    
Sbjct:   382 LKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGD 441

Query:   558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVL-VQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
                 L+S E  QM+GRAGRRGID RG  +L V    E A     +L    + L S F  S
Sbjct:   442 KFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKMEPAV-AKSMLKGSADSLNSAFHLS 500

Query:   617 YGMVLNLLA---GAKVMHLSNESDDMKALQAGRSLEEARKLVEQ 657
             Y M+LN L    G     L N     +A +A   LE+  K +E+
Sbjct:   501 YNMLLNQLRCEEGDPENLLRNSFFQFQADRAIPDLEKQIKSLEE 544

 Score = 72 (30.4 bits), Expect = 7.8e-65, Sum P(3) = 7.8e-65
 Identities = 45/210 (21%), Positives = 87/210 (41%)

Query:   924 EQRTKVARLKKKIARTEGFK---EYKKIVDTVKFTEE-KIKRLK----ARSKRLTKRIEQ 975
             + + K +  KK + R E  +   E  KI  +   TE+ K+ ++K    A+ K L K +  
Sbjct:   728 DMKIKSSSYKKTVRRLEALENLFEKHKIAKSPLITEKLKVLQMKEELIAKIKSLKKTVRS 787

Query:   976 IEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLK 1035
                  +K+ L+    +        +  V+   G+ A  I    EL L  ++ + I  D K
Sbjct:   788 STALAFKDELKARKRVLRRLGYITSDNVVELKGKVACEISSAEELTLTELMFSGIFKDAK 847

Query:  1036 PAQLAAVCASLVSEGIKVRLWKNN-SSIYEPSTTV-INVINVLDE-HRSSFLELQEKHGV 1092
               +L ++ +  V        W+       +P   + +  I + D   R + ++L  K  +
Sbjct:   848 VEELVSLLSCFV--------WRERLPDAAKPREELDLLFIQLQDTARRVAEVQLDCKVEI 899

Query:  1093 EIPCCLDSQFSGMVEA---WASGLTWREMM 1119
             ++   + S    ++EA   WA G  + E+M
Sbjct:   900 DVESFVQSFRPDIMEAVYAWAKGSKFYEVM 929

 Score = 50 (22.7 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
 Identities = 26/99 (26%), Positives = 45/99 (45%)

Query:   608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV 667
             PL+++      M   L+A  K+  L        AL     L+ ARK V +  G Y+ S+ 
Sbjct:   759 PLITEKLKVLQMKEELIA--KIKSLKKTVRSSTALAFKDELK-ARKRVLRRLG-YITSDN 814

Query:   668 MLAAKDEL-CKIQKETDVLTSEISDDAI--DRKSRRLLS 703
             ++  K ++ C+I    ++  +E+    I  D K   L+S
Sbjct:   815 VVELKGKVACEISSAEELTLTELMFSGIFKDAKVEELVS 853


>WB|WBGene00012342 [details] [associations]
            symbol:mtr-4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
            anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0016817 "hydrolase activity, acting on acid anhydrides"
            evidence=IEA] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
            [GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0042127 "regulation of cell proliferation" evidence=IMP]
            [GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
            "feminization of hermaphroditic germ-line" evidence=IMP]
            [GO:0007281 "germ cell development" evidence=IMP]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
            InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
            PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
            GO:GO:0040010 GO:GO:0002119 GO:GO:0040011 InterPro:IPR018247
            GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
            GO:GO:0040020 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0040022 GO:GO:0008026 eggNOG:COG4581 EMBL:Z70271 PIR:T26282
            RefSeq:NP_501757.1 ProteinModelPortal:Q23223 SMR:Q23223
            MINT:MINT-6670291 STRING:Q23223 PaxDb:Q23223 EnsemblMetazoa:W08D2.7
            GeneID:177824 KEGG:cel:CELE_W08D2.7 CTD:177824 WormBase:W08D2.7
            GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 InParanoid:Q23223
            KO:K12598 OMA:ENFQKAM NextBio:898538 InterPro:IPR025696
            Pfam:PF13234 Uniprot:Q23223
        Length = 1026

 Score = 391 (142.7 bits), Expect = 4.0e-64, Sum P(3) = 4.0e-64
 Identities = 99/274 (36%), Positives = 144/274 (52%)

Query:   151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTP 210
             E A  Y F++D FQ+ +I       SV+VSA TS+GKT++           ++R+ YT+P
Sbjct:   117 EPAKYYPFQLDAFQKQAILCIDNNQSVLVSAHTSAGKTVVATYAIAKCLREKQRVIYTSP 176

Query:   211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
             +KALSNQK+RE  E F D  VGL+TGD  +N +A  L+MTTEILR+MLY+      SE  
Sbjct:   177 IKALSNQKYRELEEEFKD--VGLMTGDVTLNPDASCLVMTTEILRSMLYRG-----SEI- 228

Query:   271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
             + +V  +V DE+HY+ D  RG VWEE II   K ++   LSAT+ NA + A W+  I  +
Sbjct:   229 MKEVGWVVYDEIHYMRDKERGVVWEETIILMSKNIKQAFLSATIPNARQFAQWVASIKQQ 288

Query:   331 -TELITSSRRPVPLT-WYFSTK-TALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
                ++ +  RP PL  W +      +  +++ KG+    K       L+T+         
Sbjct:   289 PVNVVYTDYRPTPLQHWIYPVGGEGMYEVVNVKGEFREDKFRDAMSGLATAGDSA-GSFN 347

Query:   388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 421
              RR       D N   I+ S      S + +N I
Sbjct:   348 KRRTGGGTQGDSNVLKIIRSVA----SNDGLNCI 377

 Score = 341 (125.1 bits), Expect = 4.0e-64, Sum P(3) = 4.0e-64
 Identities = 84/215 (39%), Positives = 120/215 (55%)

Query:   429 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYP 487
             V+  +  + S D L  I F F+R+ C++    L+D +   + E   V+   +     L P
Sbjct:   361 VLKIIRSVASNDGLNCIVFSFSRKECESYAISLKDMDFNKDHEKGMVKSVYESAIAQLSP 420

Query:   488 DAVREPAIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 543
             +  + P I  +L    +G+  HH+G +PI K  IE LF  GLVKV+FATET + G+NMPA
Sbjct:   421 EDQKLPQILNILPLLRRGIGVHHSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPA 480

Query:   544 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 603
             RT V +S  K   S    +TS E  QMAGRAGRRG D+RG V+L+      A++  +++ 
Sbjct:   481 RTVVFTSARKFDGSDNRYITSGEYIQMAGRAGRRGKDDRGTVILMVDSAMSADDAKQIIK 540

Query:   604 AGVEPLVSQFTASYGMVLNLLA--GAKVMHLSNES 636
                +PL SQF  +Y MVLNL+   G  V  + N S
Sbjct:   541 GATDPLNSQFRLTYNMVLNLMRVEGMAVSWIINNS 575

 Score = 63 (27.2 bits), Expect = 4.0e-64, Sum P(3) = 4.0e-64
 Identities = 44/203 (21%), Positives = 83/203 (40%)

Query:   925 QRTKVARLKK-KIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKE 983
             +++   RL+   + + +  K+ KK  +  +   +++  LKA  K +   +   E +  K 
Sbjct:   782 EKSLEGRLETHSMTKRDNMKDLKKQFEQKQDAVKELNALKAERKSVQSTLHLEELNNRKR 841

Query:   984 FLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVC 1043
              LR    +    AL +        G  A  +   +EL L  +L   I   L  AQ AA+ 
Sbjct:   842 VLRRLGYLGNDDALVLK-------GSVACELSASDELILTEMLLKGIFNTLDVAQTAALL 894

Query:  1044 ASLVSEG------IKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEI-PC 1096
             +  V +       +   L    S ++E +    NV  V +E +   +E  +K+     P 
Sbjct:   895 SCFVFQDKCAAPKLATELQTCLSELHEQAR---NVAKVSNECKMEVME--DKYVSSFNPG 949

Query:  1097 CLDSQFSGMVEAWASGLTWREMM 1119
              +D     +V  W +G T+ E++
Sbjct:   950 LMD-----VVYQWVNGATFSEIV 967

 Score = 41 (19.5 bits), Expect = 8.0e-62, Sum P(3) = 8.0e-62
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query:   937 ARTEGFKEYKKIVDTVKFTEEK---IKRLKARSKRLTKRIE 974
             A T+ F     ++D ++  E K   +K L AR K L  R+E
Sbjct:   750 AATKRFGNQIPLLDPIQDMEIKTVEMKELIAREKSLEGRLE 790


>UNIPROTKB|G3MYJ7 [details] [associations]
            symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GeneTree:ENSGT00690000102230 EMBL:DAAA02050346 EMBL:DAAA02050343
            EMBL:DAAA02050344 EMBL:DAAA02050345 Ensembl:ENSBTAT00000064767
            Uniprot:G3MYJ7
        Length = 605

 Score = 396 (144.5 bits), Expect = 1.9e-61, Sum P(2) = 1.9e-61
 Identities = 92/216 (42%), Positives = 126/216 (58%)

Query:   149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYT 208
             V + A  Y F +D FQR +I+      SV+VSA TS+GKT+            ++R+ +T
Sbjct:   127 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT 186

Query:   209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
             +P+KALSNQK+RE  E F D  VGL+TGD  IN  A  L+MTTEILR+MLY+      SE
Sbjct:   187 SPIKALSNQKYREMYEEFQD--VGLMTGDVTINPTASCLVMTTEILRSMLYRG-----SE 239

Query:   269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
               + +V  ++ DE+HY+ D  RG VWEE II  P  V  + LSAT+ NA + A WI  +H
Sbjct:   240 V-MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH 298

Query:   329 GKT-ELITSSRRPVPLTWYF--STKTALLPLLDEKG 361
              +   +I +  RP PL  Y   +    L  ++DE G
Sbjct:   299 KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENG 334

 Score = 308 (113.5 bits), Expect = 1.9e-61, Sum P(2) = 1.9e-61
 Identities = 77/195 (39%), Positives = 110/195 (56%)

Query:   436 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 493
             +  R+  P I F F+++ C+A A+Q  + D N  +E +M E E+       L  +  + P
Sbjct:   379 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLP 437

Query:   494 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
              ++ +L    +G+  HH G LPI K  IE LF  GL+K +FATET A GINMPART + +
Sbjct:   438 QVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 497

Query:   550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
             +  K        ++S E  QM+GRAGRRG+D+RG V+L+           +LL    +PL
Sbjct:   498 NARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPL 557

Query:   610 VSQFTASYGMVLNLL 624
              S F  +Y MVLNLL
Sbjct:   558 NSAFHLTYNMVLNLL 572

 Score = 39 (18.8 bits), Expect = 3.6e-33, Sum P(2) = 3.6e-33
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query:   629 VMHLSNESDDMKALQAGR---SLEEARKLVEQSFGNYV 663
             +   S +  +  ALQ  +   + +E +K+VE+ F N +
Sbjct:   389 IFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAI 426


>UNIPROTKB|F1MJX4 [details] [associations]
            symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
            "exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
            InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
            PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
            GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
            Pfam:PF13234 EMBL:DAAA02050346 EMBL:DAAA02050343 EMBL:DAAA02050344
            EMBL:DAAA02050345 IPI:IPI00839454 Ensembl:ENSBTAT00000047363
            Uniprot:F1MJX4
        Length = 937

 Score = 396 (144.5 bits), Expect = 6.5e-60, Sum P(2) = 6.5e-60
 Identities = 92/216 (42%), Positives = 126/216 (58%)

Query:   149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYT 208
             V + A  Y F +D FQR +I+      SV+VSA TS+GKT+            ++R+ +T
Sbjct:   127 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT 186

Query:   209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
             +P+KALSNQK+RE  E F D  VGL+TGD  IN  A  L+MTTEILR+MLY+      SE
Sbjct:   187 SPIKALSNQKYREMYEEFQD--VGLMTGDVTINPTASCLVMTTEILRSMLYRG-----SE 239

Query:   269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
               + +V  ++ DE+HY+ D  RG VWEE II  P  V  + LSAT+ NA + A WI  +H
Sbjct:   240 V-MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH 298

Query:   329 GKT-ELITSSRRPVPLTWYF--STKTALLPLLDEKG 361
              +   +I +  RP PL  Y   +    L  ++DE G
Sbjct:   299 KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENG 334

 Score = 308 (113.5 bits), Expect = 6.5e-60, Sum P(2) = 6.5e-60
 Identities = 77/195 (39%), Positives = 110/195 (56%)

Query:   436 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 493
             +  R+  P I F F+++ C+A A+Q  + D N  +E +M E E+       L  +  + P
Sbjct:   379 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLP 437

Query:   494 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
              ++ +L    +G+  HH G LPI K  IE LF  GL+K +FATET A GINMPART + +
Sbjct:   438 QVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 497

Query:   550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
             +  K        ++S E  QM+GRAGRRG+D+RG V+L+           +LL    +PL
Sbjct:   498 NARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPL 557

Query:   610 VSQFTASYGMVLNLL 624
              S F  +Y MVLNLL
Sbjct:   558 NSAFHLTYNMVLNLL 572

 Score = 39 (18.8 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query:   629 VMHLSNESDDMKALQAGR---SLEEARKLVEQSFGNYV 663
             +   S +  +  ALQ  +   + +E +K+VE+ F N +
Sbjct:   389 IFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAI 426


>MGI|MGI:1919448 [details] [associations]
            symbol:Skiv2l2 "superkiller viralicidic activity 2-like 2
            (S. cerevisiae)" species:10090 "Mus musculus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0000460 "maturation of 5.8S
            rRNA" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016817
            "hydrolase activity, acting on acid anhydrides" evidence=IEA]
            [GO:0016818 "hydrolase activity, acting on acid anhydrides, in
            phosphorus-containing anhydrides" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919448 GO:GO:0005524
            GO:GO:0005730 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
            GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581
            GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 KO:K12598
            OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 CTD:23517
            HOVERGEN:HBG104255 OrthoDB:EOG4D52WW ChiTaRS:SKIV2L2 EMBL:AK012158
            EMBL:BC029230 IPI:IPI00113134 RefSeq:NP_082427.1 UniGene:Mm.291029
            ProteinModelPortal:Q9CZU3 SMR:Q9CZU3 IntAct:Q9CZU3 STRING:Q9CZU3
            PhosphoSite:Q9CZU3 PaxDb:Q9CZU3 PRIDE:Q9CZU3
            Ensembl:ENSMUST00000022281 GeneID:72198 KEGG:mmu:72198
            UCSC:uc007rws.1 InParanoid:Q9CZU3 NextBio:335677 Bgee:Q9CZU3
            Genevestigator:Q9CZU3 GermOnline:ENSMUSG00000016018 Uniprot:Q9CZU3
        Length = 1040

 Score = 396 (144.5 bits), Expect = 1.0e-59, Sum P(2) = 1.0e-59
 Identities = 92/216 (42%), Positives = 126/216 (58%)

Query:   149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYT 208
             V + A  Y F +D FQR +I+      SV+VSA TS+GKT+            ++R+ +T
Sbjct:   127 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT 186

Query:   209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
             +P+KALSNQK+RE  E F D  VGL+TGD  IN  A  L+MTTEILR+MLY+      SE
Sbjct:   187 SPIKALSNQKYREMYEEFQD--VGLMTGDVTINPTASCLVMTTEILRSMLYRG-----SE 239

Query:   269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
               + +V  ++ DE+HY+ D  RG VWEE II  P  V  + LSAT+ NA + A WI  +H
Sbjct:   240 V-MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH 298

Query:   329 GKT-ELITSSRRPVPLTWYF--STKTALLPLLDEKG 361
              +   +I +  RP PL  Y   +    L  ++DE G
Sbjct:   299 KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENG 334

 Score = 308 (113.5 bits), Expect = 1.0e-59, Sum P(2) = 1.0e-59
 Identities = 90/262 (34%), Positives = 135/262 (51%)

Query:   436 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 493
             +  R+  P I F F+++ C+A A+Q  + D N  +E +M E E+       L  +  + P
Sbjct:   379 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFNNAIDCLSDEDKKLP 437

Query:   494 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
              ++ +L    +G+  HH G LPI K  IE LF  GL+K +FATET A GINMPART + +
Sbjct:   438 QVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 497

Query:   550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
             +  K        ++S E  QM+GRAGRRG+D+RG V+L+           +LL    +PL
Sbjct:   498 NARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPL 557

Query:   610 VSQFTASYGMVLNLLAGAKV---MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV--- 663
              S F  +Y MVLNLL   ++     L       +  +A   + E  K  E+ +   V   
Sbjct:   558 NSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPN 617

Query:   664 GSNVMLAAK--DELCKIQKETD 683
               NV++  K   +L K+ KE +
Sbjct:   618 EENVVIYYKIRQQLAKLGKEIE 639

 Score = 46 (21.3 bits), Expect = 3.5e-32, Sum P(2) = 3.5e-32
 Identities = 24/113 (21%), Positives = 48/113 (42%)

Query:   630 MHLSNESDDMKALQAGRSLEE--ARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTS 687
             + + +   ++K  +    ++E   RK V +  G    S+V+       C+I    ++L +
Sbjct:   828 LDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLT 887

Query:   688 EIS-----DDAIDRKSRRLLSEAAYKE----MANLQEELKAEKRFRTELRRRM 731
             E+      +D    ++  LLS   ++E    M  L E+L    R   E  +R+
Sbjct:   888 EMMFNGLFNDLSSEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRI 940


>TAIR|locus:2063648 [details] [associations]
            symbol:HEN2 "hua enhancer 2" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0016817 "hydrolase activity, acting on acid anhydrides"
            evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
            anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0010093
            "specification of floral organ identity" evidence=IMP] [GO:0016070
            "RNA metabolic process" evidence=TAS] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
            [GO:0003002 "regionalization" evidence=RCA] [GO:0006355 "regulation
            of transcription, DNA-dependent" evidence=RCA] [GO:0006396 "RNA
            processing" evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA]
            [GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
            development ending in seed dormancy" evidence=RCA] [GO:0009845
            "seed germination" evidence=RCA] [GO:0009909 "regulation of flower
            development" evidence=RCA] [GO:0009933 "meristem structural
            organization" evidence=RCA] [GO:0010090 "trichome morphogenesis"
            evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
            [GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
            [GO:0010228 "vegetative to reproductive phase transition of
            meristem" evidence=RCA] [GO:0010388 "cullin deneddylation"
            evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
            [GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
            "protein deubiquitination" evidence=RCA] [GO:0019915 "lipid
            storage" evidence=RCA] [GO:0030422 "production of siRNA involved in
            RNA interference" evidence=RCA] [GO:0033043 "regulation of
            organelle organization" evidence=RCA] [GO:0035196 "production of
            miRNAs involved in gene silencing by miRNA" evidence=RCA]
            [GO:0043687 "post-translational protein modification" evidence=RCA]
            [GO:0045010 "actin nucleation" evidence=RCA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0048449 "floral organ formation" evidence=RCA] [GO:0050826
            "response to freezing" evidence=RCA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002685 GO:GO:0003676 GO:GO:0010093
            GO:GO:0016070 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 EMBL:AC005171 GO:GO:0003724 HOGENOM:HOG000163047
            KO:K12598 InterPro:IPR025696 Pfam:PF13234 EMBL:BT005794
            IPI:IPI00539432 PIR:B84481 RefSeq:NP_565338.1 UniGene:At.20667
            ProteinModelPortal:Q9ZVW2 SMR:Q9ZVW2 IntAct:Q9ZVW2 PRIDE:Q9ZVW2
            EnsemblPlants:AT2G06990.1 GeneID:815269 KEGG:ath:AT2G06990
            TAIR:At2g06990 InParanoid:Q9ZVW2 OMA:TFDRVCD PhylomeDB:Q9ZVW2
            ProtClustDB:CLSN2688028 ArrayExpress:Q9ZVW2 Genevestigator:Q9ZVW2
            Uniprot:Q9ZVW2
        Length = 995

 Score = 407 (148.3 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
 Identities = 92/246 (37%), Positives = 142/246 (57%)

Query:   151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTP 210
             ++A  Y F++D FQ  S+    R  S++VSA TS+GKT +          +++R+ YT+P
Sbjct:    73 DMAKTYPFKLDPFQSVSVACLERKESILVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 132

Query:   211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
             LKALSNQK+RE +  F D  VGL+TGD  ++  A  L+MTTEILR MLY+      SE  
Sbjct:   133 LKALSNQKYRELQHEFKD--VGLMTGDVTLSPNASCLVMTTEILRAMLYRG-----SEV- 184

Query:   271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
             L +V  ++ DE+HY+ D  RG VWEE II+ P  ++++ LSAT++NA E A WI  +H +
Sbjct:   185 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICYLHKQ 244

Query:   331 T-ELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
                ++ +  RP PL  Y F      L L+ +  +        +++++  +  KP  + G 
Sbjct:   245 PCHVVYTDFRPTPLQHYAFPMGGGGLYLVVDDNEQFRED---SFVKMQDTFPKPKSNDGK 301

Query:   389 RRRNSR 394
             +  N +
Sbjct:   302 KSANGK 307

 Score = 294 (108.6 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
 Identities = 73/199 (36%), Positives = 107/199 (53%)

Query:   436 LRSRDMLPAIWFIFNRRGCDAAVQYLE--DCNLLDECEMSEVELALKRFRILYPDAVREP 493
             +  R   P I F F+RR C+     +   D N  +E E+ E ++     + L  +    P
Sbjct:   331 IMERKFEPVIIFSFSRRECEQHALSMSKLDFNTDEEKEVVE-QVFNNAMQCLNEEDRSLP 389

Query:   494 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
             AI+ +L    +G+A HH+G LP+ K  +E LFQ GLVK +FATET A G+NMPA+T V +
Sbjct:   390 AIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFT 449

Query:   550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
             ++ K        + S E  QM+GRAGRRG D RG  +++            ++     PL
Sbjct:   450 AVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGICIIMIDEQMEMNTLRDMMLGKPAPL 509

Query:   610 VSQFTASYGMVLNLLAGAK 628
             +S F  SY  +LNLL+ A+
Sbjct:   510 LSTFRLSYYTILNLLSRAE 528


>UNIPROTKB|F1SLL6 [details] [associations]
            symbol:SKIV2L2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
            "exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
            InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
            PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
            GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
            Pfam:PF13234 EMBL:FP236391 EMBL:CU929534 Ensembl:ENSSSCT00000018417
            Uniprot:F1SLL6
        Length = 1046

 Score = 396 (144.5 bits), Expect = 1.7e-59, Sum P(2) = 1.7e-59
 Identities = 92/216 (42%), Positives = 126/216 (58%)

Query:   149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYT 208
             V + A  Y F +D FQR +I+      SV+VSA TS+GKT+            ++R+ +T
Sbjct:   130 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT 189

Query:   209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
             +P+KALSNQK+RE  E F D  VGL+TGD  IN  A  L+MTTEILR+MLY+      SE
Sbjct:   190 SPIKALSNQKYREMYEEFQD--VGLMTGDVTINPTASCLVMTTEILRSMLYRG-----SE 242

Query:   269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
               + +V  ++ DE+HY+ D  RG VWEE II  P  V  + LSAT+ NA + A WI  +H
Sbjct:   243 V-MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH 301

Query:   329 GKT-ELITSSRRPVPLTWYF--STKTALLPLLDEKG 361
              +   +I +  RP PL  Y   +    L  ++DE G
Sbjct:   302 KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENG 337

 Score = 306 (112.8 bits), Expect = 1.7e-59, Sum P(2) = 1.7e-59
 Identities = 77/195 (39%), Positives = 110/195 (56%)

Query:   436 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 493
             +  R+  P I F F+++ C+A A+Q  + D N  +E +M E E+       L  +  + P
Sbjct:   382 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLP 440

Query:   494 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
              ++ +L    +G+  HH G LPI K  IE LF  GL+K +FATET A GINMPART + +
Sbjct:   441 QVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 500

Query:   550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
             +  K        ++S E  QM+GRAGRRG+D+RG V+L+           +LL    +PL
Sbjct:   501 NARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPL 560

Query:   610 VSQFTASYGMVLNLL 624
              S F  +Y MVLNLL
Sbjct:   561 NSAFHLTYNMVLNLL 575

 Score = 39 (18.8 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query:   629 VMHLSNESDDMKALQAGR---SLEEARKLVEQSFGNYV 663
             +   S +  +  ALQ  +   + +E +K+VE+ F N +
Sbjct:   392 IFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAI 429


>UNIPROTKB|F5H7E2 [details] [associations]
            symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
            Pfam:PF13234 HGNC:HGNC:18734 ChiTaRS:SKIV2L2 EMBL:AC010480
            EMBL:AC020728 IPI:IPI01011073 ProteinModelPortal:F5H7E2 SMR:F5H7E2
            Ensembl:ENST00000545714 UCSC:uc011cqi.2 ArrayExpress:F5H7E2
            Bgee:F5H7E2 Uniprot:F5H7E2
        Length = 941

 Score = 396 (144.5 bits), Expect = 3.6e-59, Sum P(3) = 3.6e-59
 Identities = 92/216 (42%), Positives = 126/216 (58%)

Query:   149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYT 208
             V + A  Y F +D FQR +I+      SV+VSA TS+GKT+            ++R+ +T
Sbjct:    28 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT 87

Query:   209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
             +P+KALSNQK+RE  E F D  VGL+TGD  IN  A  L+MTTEILR+MLY+      SE
Sbjct:    88 SPIKALSNQKYREMYEEFQD--VGLMTGDVTINPTASCLVMTTEILRSMLYRG-----SE 140

Query:   269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
               + +V  ++ DE+HY+ D  RG VWEE II  P  V  + LSAT+ NA + A WI  +H
Sbjct:   141 V-MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH 199

Query:   329 GKT-ELITSSRRPVPLTWYF--STKTALLPLLDEKG 361
              +   +I +  RP PL  Y   +    L  ++DE G
Sbjct:   200 KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENG 235

 Score = 306 (112.8 bits), Expect = 3.6e-59, Sum P(3) = 3.6e-59
 Identities = 77/195 (39%), Positives = 110/195 (56%)

Query:   436 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 493
             +  R+  P I F F+++ C+A A+Q  + D N  +E +M E E+       L  +  + P
Sbjct:   280 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLP 338

Query:   494 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
              ++ +L    +G+  HH G LPI K  IE LF  GL+K +FATET A GINMPART + +
Sbjct:   339 QVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 398

Query:   550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
             +  K        ++S E  QM+GRAGRRG+D+RG V+L+           +LL    +PL
Sbjct:   399 NARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPL 458

Query:   610 VSQFTASYGMVLNLL 624
              S F  +Y MVLNLL
Sbjct:   459 NSAFHLTYNMVLNLL 473

 Score = 43 (20.2 bits), Expect = 3.6e-59, Sum P(3) = 3.6e-59
 Identities = 22/91 (24%), Positives = 39/91 (42%)

Query:   650 EARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS-----DDAIDRKSRRLLSE 704
             + RK V +  G    S+V+       C+I    ++L +E+      +D    ++  LLS 
Sbjct:   751 KCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSC 810

Query:   705 AAYKE----MANLQEELKAEKRFRTELRRRM 731
               ++E    M  L E+L    R   E  +R+
Sbjct:   811 FVFQENSSEMPKLTEQLAGPLRQMQECAKRI 841

 Score = 39 (18.8 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query:   629 VMHLSNESDDMKALQAGR---SLEEARKLVEQSFGNYV 663
             +   S +  +  ALQ  +   + +E +K+VE+ F N +
Sbjct:   290 IFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAI 327


>UNIPROTKB|E2RCI5 [details] [associations]
            symbol:SKIV2L2 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GeneTree:ENSGT00690000102230 KO:K12598 OMA:ENFQKAM
            InterPro:IPR025696 Pfam:PF13234 CTD:23517 EMBL:AAEX03001437
            RefSeq:XP_849676.1 Ensembl:ENSCAFT00000010985 GeneID:607950
            KEGG:cfa:607950 Uniprot:E2RCI5
        Length = 1042

 Score = 396 (144.5 bits), Expect = 5.5e-59, Sum P(3) = 5.5e-59
 Identities = 92/216 (42%), Positives = 126/216 (58%)

Query:   149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYT 208
             V + A  Y F +D FQR +I+      SV+VSA TS+GKT+            ++R+ +T
Sbjct:   129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT 188

Query:   209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
             +P+KALSNQK+RE  E F D  VGL+TGD  IN  A  L+MTTEILR+MLY+      SE
Sbjct:   189 SPIKALSNQKYREMYEEFQD--VGLMTGDVTINPTASCLVMTTEILRSMLYRG-----SE 241

Query:   269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
               + +V  ++ DE+HY+ D  RG VWEE II  P  V  + LSAT+ NA + A WI  +H
Sbjct:   242 V-MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH 300

Query:   329 GKT-ELITSSRRPVPLTWYF--STKTALLPLLDEKG 361
              +   +I +  RP PL  Y   +    L  ++DE G
Sbjct:   301 KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENG 336

 Score = 306 (112.8 bits), Expect = 5.5e-59, Sum P(3) = 5.5e-59
 Identities = 77/195 (39%), Positives = 110/195 (56%)

Query:   436 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 493
             +  R+  P I F F+++ C+A A+Q  + D N  +E +M E E+       L  +  + P
Sbjct:   381 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLP 439

Query:   494 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
              ++ +L    +G+  HH G LPI K  IE LF  GL+K +FATET A GINMPART + +
Sbjct:   440 QVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 499

Query:   550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
             +  K        ++S E  QM+GRAGRRG+D+RG V+L+           +LL    +PL
Sbjct:   500 NARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPL 559

Query:   610 VSQFTASYGMVLNLL 624
              S F  +Y MVLNLL
Sbjct:   560 NSAFHLTYNMVLNLL 574

 Score = 44 (20.5 bits), Expect = 5.5e-59, Sum P(3) = 5.5e-59
 Identities = 27/115 (23%), Positives = 48/115 (41%)

Query:   650 EARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS-----DDAIDRKSRRLLSE 704
             + RK V +  G    S+V+       C+I    ++L +E+      +D    ++  LLS 
Sbjct:   852 KCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSC 911

Query:   705 AAYKE----MANLQEELKAEKRFRTELRRRMELKRFSALKDILKD-FENGHLPFL 754
               ++E    M  L E+L    R   E  +R+      A  +I ++ + N   P L
Sbjct:   912 FVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLNSFKPHL 966

 Score = 39 (18.8 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query:   629 VMHLSNESDDMKALQAGR---SLEEARKLVEQSFGNYV 663
             +   S +  +  ALQ  +   + +E +K+VE+ F N +
Sbjct:   391 IFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAI 428


>UNIPROTKB|P42285 [details] [associations]
            symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=IC] [GO:0000178 "exosome (RNase complex)"
            evidence=IDA] [GO:0000460 "maturation of 5.8S rRNA" evidence=IMP]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0000398
            GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047
            KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:D29641
            EMBL:BX640789 EMBL:BC014669 EMBL:BC028604 EMBL:BC031779
            EMBL:BC065258 EMBL:BC104996 EMBL:BC113509 IPI:IPI00647217
            RefSeq:NP_056175.3 UniGene:Hs.274531 ProteinModelPortal:P42285
            SMR:P42285 IntAct:P42285 STRING:P42285 PhosphoSite:P42285
            DMDM:71153172 SWISS-2DPAGE:P42285 PaxDb:P42285 PeptideAtlas:P42285
            PRIDE:P42285 DNASU:23517 Ensembl:ENST00000230640 GeneID:23517
            KEGG:hsa:23517 UCSC:uc003jpy.4 CTD:23517 GeneCards:GC05P054605
            HGNC:HGNC:18734 HPA:HPA037379 neXtProt:NX_P42285
            PharmGKB:PA134901921 HOVERGEN:HBG104255 InParanoid:P42285
            OrthoDB:EOG4D52WW PhylomeDB:P42285 ChiTaRS:SKIV2L2 GenomeRNAi:23517
            NextBio:45957 ArrayExpress:P42285 Bgee:P42285 CleanEx:HS_SKIV2L2
            Genevestigator:P42285 GermOnline:ENSG00000039123 Uniprot:P42285
        Length = 1042

 Score = 396 (144.5 bits), Expect = 7.0e-59, Sum P(3) = 7.0e-59
 Identities = 92/216 (42%), Positives = 126/216 (58%)

Query:   149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYT 208
             V + A  Y F +D FQR +I+      SV+VSA TS+GKT+            ++R+ +T
Sbjct:   129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT 188

Query:   209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
             +P+KALSNQK+RE  E F D  VGL+TGD  IN  A  L+MTTEILR+MLY+      SE
Sbjct:   189 SPIKALSNQKYREMYEEFQD--VGLMTGDVTINPTASCLVMTTEILRSMLYRG-----SE 241

Query:   269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
               + +V  ++ DE+HY+ D  RG VWEE II  P  V  + LSAT+ NA + A WI  +H
Sbjct:   242 V-MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH 300

Query:   329 GKT-ELITSSRRPVPLTWYF--STKTALLPLLDEKG 361
              +   +I +  RP PL  Y   +    L  ++DE G
Sbjct:   301 KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENG 336

 Score = 306 (112.8 bits), Expect = 7.0e-59, Sum P(3) = 7.0e-59
 Identities = 77/195 (39%), Positives = 110/195 (56%)

Query:   436 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 493
             +  R+  P I F F+++ C+A A+Q  + D N  +E +M E E+       L  +  + P
Sbjct:   381 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLP 439

Query:   494 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
              ++ +L    +G+  HH G LPI K  IE LF  GL+K +FATET A GINMPART + +
Sbjct:   440 QVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 499

Query:   550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
             +  K        ++S E  QM+GRAGRRG+D+RG V+L+           +LL    +PL
Sbjct:   500 NARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPL 559

Query:   610 VSQFTASYGMVLNLL 624
              S F  +Y MVLNLL
Sbjct:   560 NSAFHLTYNMVLNLL 574

 Score = 43 (20.2 bits), Expect = 7.0e-59, Sum P(3) = 7.0e-59
 Identities = 22/91 (24%), Positives = 39/91 (42%)

Query:   650 EARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS-----DDAIDRKSRRLLSE 704
             + RK V +  G    S+V+       C+I    ++L +E+      +D    ++  LLS 
Sbjct:   852 KCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSC 911

Query:   705 AAYKE----MANLQEELKAEKRFRTELRRRM 731
               ++E    M  L E+L    R   E  +R+
Sbjct:   912 FVFQENSSEMPKLTEQLAGPLRQMQECAKRI 942

 Score = 39 (18.8 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query:   629 VMHLSNESDDMKALQAGR---SLEEARKLVEQSFGNYV 663
             +   S +  +  ALQ  +   + +E +K+VE+ F N +
Sbjct:   391 IFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAI 428


>FB|FBgn0001986 [details] [associations]
            symbol:l(2)35Df "lethal (2) 35Df" species:7227 "Drosophila
            melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0071013 "catalytic step
            2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
            InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
            PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:AE014134 GO:GO:0022008 GO:GO:0003676 GO:GO:0000398
            GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG4581 GeneTree:ENSGT00690000102230 KO:K12598
            OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:AF145638
            RefSeq:NP_524929.1 UniGene:Dm.1748 SMR:Q9Y134 MINT:MINT-942655
            STRING:Q9Y134 EnsemblMetazoa:FBtr0080760 GeneID:48782
            KEGG:dme:Dmel_CG4152 UCSC:CG4152-RA FlyBase:FBgn0001986
            InParanoid:Q9Y134 OrthoDB:EOG4K3JB5 GenomeRNAi:48782 NextBio:839548
            Uniprot:Q9Y134
        Length = 1055

 Score = 416 (151.5 bits), Expect = 7.1e-59, Sum P(3) = 7.1e-59
 Identities = 94/213 (44%), Positives = 128/213 (60%)

Query:   153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLK 212
             A  Y F +D FQR +I       SV+VSA TS+GKT++           ++R+ YTTP+K
Sbjct:   145 AKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAGKTVVAEYAIAKSLAAKQRVIYTTPIK 204

Query:   213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
             ALSNQKFREF + F D  VGL+TGD  IN  A  LIMTTEILRNMLY+      SE  + 
Sbjct:   205 ALSNQKFREFTDEFKD--VGLVTGDVTINPSASCLIMTTEILRNMLYRG-----SEI-MR 256

Query:   273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
             +V  +V DE+HY+ D  RG VWEE +I  P  V+ + LSAT+ NA + A W+  +H +  
Sbjct:   257 EVGWVVFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQFAEWVCHLHKQPC 316

Query:   332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGK 362
              ++ +  RP PL  Y   +    +  ++DEKG+
Sbjct:   317 HVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQ 349

 Score = 291 (107.5 bits), Expect = 7.1e-59, Sum P(3) = 7.1e-59
 Identities = 72/195 (36%), Positives = 109/195 (55%)

Query:   436 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 493
             +  R+  P I F F+++ C+  A+Q  + D N  DE ++ + E+      +L  +  R P
Sbjct:   397 IMERNFAPVIIFSFSKKDCEIYAMQMAKLDFNTPDEKKLVD-EVFNNAMDVLTEEDRRLP 455

Query:   494 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
              ++ +L    +G+  HH G LPI K  IE LF  GL+K +FATET A G+NMPART + +
Sbjct:   456 QVENVLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFT 515

Query:   550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
             +  K        ++S E  QMAGRAGRRG+D++G V+L+            ++    +P+
Sbjct:   516 APRKFDGKKFRWISSGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPAVGRDIVQGKADPI 575

Query:   610 VSQFTASYGMVLNLL 624
              S F  +Y MVLNLL
Sbjct:   576 NSAFHLTYNMVLNLL 590

 Score = 37 (18.1 bits), Expect = 7.1e-59, Sum P(3) = 7.1e-59
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query:  1064 EPSTTVINVINVLDEHR-SSFLELQ---EKHG 1091
             E  T  +N + + DEH  +S+  ++   ++HG
Sbjct:   622 EQKTLELNKLTIKDEHNIASYHHIRSQLDQHG 653


>ZFIN|ZDB-GENE-040426-2854 [details] [associations]
            symbol:skiv2l2 "superkiller viralicidic activity
            2-like 2" species:7955 "Danio rerio" [GO:0016818 "hydrolase
            activity, acting on acid anhydrides, in phosphorus-containing
            anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
            acting on acid anhydrides" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] [GO:0031101 "fin regeneration"
            evidence=IMP] [GO:0051781 "positive regulation of cell division"
            evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
            InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
            PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-040426-2854 GO:GO:0005524 GO:GO:0051781 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031101
            GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047 KO:K12598
            InterPro:IPR025696 Pfam:PF13234 CTD:23517 HOVERGEN:HBG104255
            OrthoDB:EOG4D52WW EMBL:BC061456 IPI:IPI00481753 RefSeq:NP_999933.1
            UniGene:Dr.75715 ProteinModelPortal:Q6P7X6 STRING:Q6P7X6
            PRIDE:Q6P7X6 GeneID:406795 KEGG:dre:406795 NextBio:20818305
            Bgee:Q6P7X6 Uniprot:Q6P7X6
        Length = 1034

 Score = 391 (142.7 bits), Expect = 3.4e-57, Sum P(3) = 3.4e-57
 Identities = 92/217 (42%), Positives = 126/217 (58%)

Query:   149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYT 208
             V + A  Y F +D FQR +I       SV+VSA TS+GKT+            ++R+ +T
Sbjct:   117 VGKAAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT 176

Query:   209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
             +P+KALSNQK+RE  E F D  VGL+TGD  IN  A  L+MTTEILR+MLY+      SE
Sbjct:   177 SPIKALSNQKYREMYEEFQD--VGLMTGDVTINPTASCLVMTTEILRSMLYRG-----SE 229

Query:   269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
               + +V  ++ DE+HY+ D  RG VWEE II  P  V  + LSATV NA + A WI  +H
Sbjct:   230 V-MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHHVFLSATVPNARQFAEWICHLH 288

Query:   329 GKT-ELITSSRRPVPLTWYF--STKTALLPLLDEKGK 362
              +   ++ +  RP PL  Y   +    L  ++DE G+
Sbjct:   289 KQPCHVVYTDYRPTPLQHYIFPAGGDGLHLVVDENGE 325

 Score = 295 (108.9 bits), Expect = 3.4e-57, Sum P(3) = 3.4e-57
 Identities = 76/195 (38%), Positives = 108/195 (55%)

Query:   436 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 493
             +  R+  P I F F+++ C+A A+Q  + D N  +E ++ E E+       L  +  + P
Sbjct:   374 IMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVE-EVFNNATDCLSDEDKKLP 432

Query:   494 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
              ++ +L    +G+  HH G LPI K  IE LF  GL+K +FATET A GINMPART + +
Sbjct:   433 QVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGINMPARTVLFT 492

Query:   550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
             S  K        ++S E  QM+GRAGRRG+D RG V+ +           +LL    +PL
Sbjct:   493 SARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAVGKQLLKGSADPL 552

Query:   610 VSQFTASYGMVLNLL 624
              S F  +Y MVLNLL
Sbjct:   553 NSAFHLTYNMVLNLL 567

 Score = 43 (20.2 bits), Expect = 3.4e-57, Sum P(3) = 3.4e-57
 Identities = 27/115 (23%), Positives = 48/115 (41%)

Query:   650 EARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS-----DDAIDRKSRRLLSE 704
             + RK V +  G    S+V+       C+     ++L +E+      +D    ++  LLS 
Sbjct:   844 KCRKRVLRRLGFATSSDVIEMKGRVACETSSGDELLLTEMMFNGLFNDLTAEQATALLSC 903

Query:   705 AAYKEMAN----LQEELKAEKRFRTELRRRMELKRFSALKDILKD-FENGHLPFL 754
               ++E AN    L E+L    R   E  +R+      A  ++ +D + N   P L
Sbjct:   904 FVFQENANEMPKLTEQLGGPLRQMQECAKRIAKVSAEAKLEVDEDSYLNQFRPHL 958

 Score = 43 (20.2 bits), Expect = 6.0e-31, Sum P(3) = 6.0e-31
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query:   629 VMHLSNESDDMKALQAGR---SLEEARKLVEQSFGN 661
             +   S +  +  ALQ  +   + +E +KLVE+ F N
Sbjct:   384 IFSFSKKECEAYALQVSKLDFNTDEEKKLVEEVFNN 419

 Score = 38 (18.4 bits), Expect = 1.1e-56, Sum P(3) = 1.1e-56
 Identities = 13/64 (20%), Positives = 26/64 (40%)

Query:   932 LKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVI 991
             L+K   + + ++    +VD +K  EE+   ++   +       +I     K    I   I
Sbjct:   578 LEKSFYQFQHYRAVPGVVDRMKKLEEEYNAIRIPKEESVVTYYKIRQQLAKLGKEIEEFI 637

Query:   992 HETR 995
             H+ R
Sbjct:   638 HKPR 641


>UNIPROTKB|F1MAH7 [details] [associations]
            symbol:F1MAH7 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 InterPro:IPR025696
            Pfam:PF13234 IPI:IPI00372914 PRIDE:F1MAH7
            Ensembl:ENSRNOT00000013683 ArrayExpress:F1MAH7 Uniprot:F1MAH7
        Length = 1046

 Score = 374 (136.7 bits), Expect = 4.4e-53, Sum P(2) = 4.4e-53
 Identities = 87/209 (41%), Positives = 119/209 (56%)

Query:   156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALS 215
             + F    F R  +E      SV+VSA TS+GKT+            ++R+ +T+P+KALS
Sbjct:   136 FPFSYSIFYREMVECLTINQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALS 195

Query:   216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
             NQK+RE  E F D  VGL+TGD  IN  A  L+MTTEILR+MLY+      SE  + +V 
Sbjct:   196 NQKYREMYEEFQD--VGLMTGDVTINPTASCLVMTTEILRSMLYRG-----SEV-MREVA 247

Query:   276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELI 334
              ++ DE+HY+ D  RG VWEE II  P  V  + LSAT+ NA + A WI  +H +   +I
Sbjct:   248 WVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVI 307

Query:   335 TSSRRPVPLTWYF--STKTALLPLLDEKG 361
              +  RP PL  Y   +    L  ++DE G
Sbjct:   308 YTDYRPTPLQHYIFPAGGDGLHLVVDENG 336

 Score = 268 (99.4 bits), Expect = 4.4e-53, Sum P(2) = 4.4e-53
 Identities = 64/159 (40%), Positives = 94/159 (59%)

Query:   436 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 493
             +  R+  P I F F+++ C+A A+Q  + D N  +E +M E E+       L  +  + P
Sbjct:   381 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFNNAIDCLSDEDKKLP 439

Query:   494 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
              ++ +L    +G+  HH G LPI K  IE LF  GL+K +FATET A GINMPART + +
Sbjct:   440 QVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 499

Query:   550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
             +  K        ++S E  QM+GRAGRRG+D+RG V+L+
Sbjct:   500 NARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILM 538

 Score = 39 (18.8 bits), Expect = 4.8e-29, Sum P(2) = 4.8e-29
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query:   629 VMHLSNESDDMKALQAGR---SLEEARKLVEQSFGNYV 663
             +   S +  +  ALQ  +   + +E +K+VE+ F N +
Sbjct:   391 IFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI 428


>UNIPROTKB|Q10701 [details] [associations]
            symbol:helY "Probable helicase HelY" species:1773
            "Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
            GenomeReviews:AL123456_GR EMBL:BX842578 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG4581 PIR:G70767 RefSeq:NP_216608.1 RefSeq:NP_336620.1
            RefSeq:YP_006515507.1 ProteinModelPortal:Q10701 SMR:Q10701
            PRIDE:Q10701 EnsemblBacteria:EBMYCT00000003887
            EnsemblBacteria:EBMYCT00000069683 GeneID:13316898 GeneID:887736
            GeneID:924573 KEGG:mtc:MT2153 KEGG:mtu:Rv2092c KEGG:mtv:RVBD_2092c
            PATRIC:18126496 TubercuList:Rv2092c HOGENOM:HOG000245391 KO:K03727
            OMA:ANESAWQ ProtClustDB:CLSK791623 Uniprot:Q10701
        Length = 906

 Score = 524 (189.5 bits), Expect = 4.0e-50, Sum P(2) = 4.0e-50
 Identities = 165/464 (35%), Positives = 229/464 (49%)

Query:   264 MVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAG 322
             M+ ++S  L  +  +V+DEVH+L+D  RG VWEE+I+  P +V+++ LSATV+NA+E  G
Sbjct:   115 MLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGG 174

Query:   323 WIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 382
             WI  + G T ++    RPVPL W    +  L+      GK M     L   ++  +E +P
Sbjct:   175 WIQTVRGDTTVVVDEHRPVPL-W----QHVLV------GKRM---FDLFDYRIGEAEGQP 220

Query:   383 YKDGGSRRRNS-RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
               +    R  + R+ AD      +  +   +         R    P+VI  L    +  +
Sbjct:   221 QVNRELLRHIAHRREADR-----MADWQPRRRGSGRPGFYRPPGRPEVIAKL---DAEGL 272

Query:   442 LPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV-ELALKRFRILYPDAVREPAI--- 495
             LPAI F+F+R GCDAAV Q L     L  E E + + E+   R   L    +        
Sbjct:   273 LPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEW 332

Query:   496 -KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554
              +GLL+G+AAHHAG LP ++  +EELF  GLVK VFATETLA GINMPART VL  L K 
Sbjct:   333 REGLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKF 392

Query:   555 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 614
                  + LT  E  Q+ GRAGRRGID  GH V++  P     E   L      PL S F 
Sbjct:   393 NGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFA 452

Query:   615 ASYGMVLNLL--AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVM--LA 670
              SY M +NL+   G +  H   E       QA RS+    + +E+  GN +   +   L 
Sbjct:   453 PSYNMTINLVHRMGPQQAHRLLEQS-FAQYQADRSVVGLVRGIER--GNRILGEIAAELG 509

Query:   671 AKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQ 714
               D             SE+ + A  R SR    +AA   +A L+
Sbjct:   510 GSDAPILEYARLRARVSEL-ERAQARASRLQRRQAATDALAALR 552

 Score = 444 (161.4 bits), Expect = 4.1e-41, Sum P(2) = 4.1e-41
 Identities = 97/255 (38%), Positives = 144/255 (56%)

Query:   145 EMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRR 204
             E+ ++D   +   F +D FQ+ +  A  RG  V+V APT +GKT++             +
Sbjct:     3 ELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSK 62

Query:   205 IFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGM 264
              FYTTPLKALSNQK  +    +G + +GLLTGD ++N  A +++MTTE+LRNMLY     
Sbjct:    63 CFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLY----- 117

Query:   265 VSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
              +    L  +  +V+DEVH+L+D  RG VWEE+I+  P +V+++ LSATV+NA+E  GWI
Sbjct:   118 -ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWI 176

Query:   325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEK-----GK-HMNRKLSLNYLQLSTS 378
               + G T ++    RPVPL  +      +  L D +     G+  +NR+L L ++     
Sbjct:   177 QTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNREL-LRHIA-HRR 234

Query:   379 EVKPYKDGGSRRRNS 393
             E     D   RRR S
Sbjct:   235 EADRMADWQPRRRGS 249

 Score = 78 (32.5 bits), Expect = 4.0e-50, Sum P(2) = 4.0e-50
 Identities = 26/95 (27%), Positives = 46/95 (48%)

Query:   957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD--INTQVIFPLGETAAAI 1014
             E+  R++  + +L +++     S  + F R   ++ E   +D      V+   G   A I
Sbjct:   681 ERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARI 740

Query:  1015 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
               E++L +A  LR      LKPA+LA V +++V E
Sbjct:   741 YSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYE 775


>SGD|S000004390 [details] [associations]
            symbol:SKI2 "Ski complex component and putative RNA helicase"
            species:4932 "Saccharomyces cerevisiae" [GO:0003724 "RNA helicase
            activity" evidence=ISS] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
            acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0070478
            "nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
            nonsense-mediated decay" evidence=IGI;IMP] [GO:0016817 "hydrolase
            activity, acting on acid anhydrides" evidence=IEA] [GO:0055087 "Ski
            complex" evidence=IDA;IPI] [GO:0034427 "nuclear-transcribed mRNA
            catabolic process, exonucleolytic, 3'-5'" evidence=IMP] [GO:0070481
            "nuclear-transcribed mRNA catabolic process, non-stop decay"
            evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0051607 "defense
            response to virus" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
            PROSITE:PS51194 SMART:SM00490 SGD:S000004390 GO:GO:0005524
            GO:GO:0006417 GO:GO:0003677 EMBL:BK006945 GO:GO:0051607
            GO:GO:0003723 EMBL:U19729 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:Z18944 EMBL:L13469 GO:GO:0008026 GO:GO:0003724
            GO:GO:0070478 GO:GO:0070481 eggNOG:COG4581 KO:K05544
            RefSeq:NP_013505.4 GeneID:851117 KEGG:sce:YLR401C
            InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087 HOGENOM:HOG000163048
            KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R PIR:S55954
            RefSeq:NP_013502.3 PDB:4A4K PDB:4A4Z PDBsum:4A4K PDBsum:4A4Z
            ProteinModelPortal:P35207 SMR:P35207 DIP:DIP-5887N IntAct:P35207
            MINT:MINT-662639 STRING:P35207 PaxDb:P35207 PeptideAtlas:P35207
            EnsemblFungi:YLR398C GeneID:851114 KEGG:sce:YLR398C CYGD:YLR398c
            GeneTree:ENSGT00690000102154 NextBio:967830 Genevestigator:P35207
            GermOnline:YLR398C Uniprot:P35207
        Length = 1287

 Score = 530 (191.6 bits), Expect = 5.2e-49, Sum P(2) = 5.2e-49
 Identities = 129/375 (34%), Positives = 204/375 (54%)

Query:   128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
             +W  V  L ++++ F +E+I     A  + F +D FQ+ ++    +G SV V+A TS+GK
Sbjct:   301 EWAHVVDLNHKIENF-DELIP--NPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 357

Query:   188 TLIXXXXXXXXXXNQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
             T++          N  +  YT+P+KALSNQKFR+F+ETF D N+GL+TGD  IN +A  L
Sbjct:   358 TVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCL 417

Query:   248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
             IMTTEILR+MLY+   ++       DV+ ++ DEVHY++D  RG VWEE+II  P+ V+ 
Sbjct:   418 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 471

Query:   308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-- 364
             I LSATV N  E A WIG+   K   +I++ +RPVPL      K  L+P++++  + +  
Sbjct:   472 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEA 531

Query:   365 NRKLSLNYLQLSTSEVKPYKD----GGSRRRNSRKHADMNSNN----IVTSFGQHQLSKN 416
             N +     L   +++  P K     GGS  R  R  ++           T  G ++    
Sbjct:   532 NFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSR 591

Query:   417 SINAI---RRSQVPQ--VIDTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL 466
                AI   +R    Q       W     +LR R++LP + F+F+++ C+    +LE  N 
Sbjct:   592 GAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINF 651

Query:   467 LDECEMSEVELALKR 481
              +  E S++ + +++
Sbjct:   652 CNNKEKSQIHMFIEK 666

 Score = 364 (133.2 bits), Expect = 6.8e-31, Sum P(2) = 6.8e-31
 Identities = 86/248 (34%), Positives = 140/248 (56%)

Query:   384 KDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
             +DG G R  ++R  A+   +    + G ++    + +   +   P++++   +LR R++L
Sbjct:   571 RDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVN---YLRKRELL 627

Query:   443 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KGL 498
             P + F+F+++ C+    +LE  N  +  E S++ + +++         R+ P I   + L
Sbjct:   628 PMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSL 687

Query:   499 L-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
             L +G+A HH G LPI K  IE LF +G +KV+FATET A G+N+P RT + SS+ K   +
Sbjct:   688 LERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGN 747

Query:   558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTAS 616
             G  +LT  E  QMAGRAGRRG+D+ G V+++      +    K +  GV   L SQF  +
Sbjct:   748 GLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLT 807

Query:   617 YGMVLNLL 624
             Y M+LNLL
Sbjct:   808 YNMILNLL 815

 Score = 70 (29.7 bits), Expect = 5.2e-49, Sum P(2) = 5.2e-49
 Identities = 51/217 (23%), Positives = 92/217 (42%)

Query:   921 NYKEQRTKVAR--LKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQI-- 976
             N ++Q  K+ +  L +   R E FK   K +     ++  + + KA    + K+IE++  
Sbjct:  1024 NIEKQGLKIHQILLDRTNIRDEIFK--LKSIKCPNLSQHIVPKFKAHV--IKKKIEELYH 1079

Query:   977 -----EPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKIL 1031
                    S   ++ +   V+ +T  +D N  V+   G  A  I    EL L  ++ +  L
Sbjct:  1080 LMSDQNLSLLPDYEKRLAVLKDTEFIDQNHNVLLK-GRVACEINSGYELVLTELILDNFL 1138

Query:  1032 LDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHG 1091
                +P ++ A+ +  V EG K R  +    I  P   +      ++E     L +   H 
Sbjct:  1139 GSFEPEEIVALLSVFVYEG-KTR--EEEPPIVTPR--LAKGKQRIEEIYKKMLCVFNTH- 1192

Query:  1092 VEIPCCLDS-------QFSGM--VEAWASGLTWREMM 1119
              +IP   D        +F+ M  V  WA GL+++E+M
Sbjct:  1193 -QIPLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIM 1228


>ZFIN|ZDB-GENE-010430-5 [details] [associations]
            symbol:skiv2l "superkiller viralicidic activity 2 (S.
            cerevisiae homolog)-like" species:7955 "Danio rerio" [GO:0016817
            "hydrolase activity, acting on acid anhydrides" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
            acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
            PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-010430-5 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
            GeneTree:ENSGT00690000102154 EMBL:FP102194 EMBL:FP067438
            IPI:IPI00490616 Ensembl:ENSDART00000089609 OMA:TIMASAD Bgee:F1R881
            Uniprot:F1R881
        Length = 1249

 Score = 513 (185.6 bits), Expect = 6.2e-44, Sum P(2) = 6.2e-44
 Identities = 135/359 (37%), Positives = 190/359 (52%)

Query:   273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
             D++ ++ DEVHY++D  RG VWEE++I  P+ V II LSATV NA E + WIG+I  +  
Sbjct:   424 DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVEFSEWIGRIKKRHI 483

Query:   332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
              +I++ +RPVPL  Y  T  +      +K   M    + N+L         Y    +++ 
Sbjct:   484 YVISTIKRPVPLEHYLYTGNSTKT---QKELFMLLDATGNFLTKGY-----YAAVEAKKE 535

Query:   392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
              + KHA         SFG   +S+++  A +   V Q +  L +L  R   P + F F+R
Sbjct:   536 RTSKHAQ--------SFGTKNVSQHNTTASQDRAVWQTL--LNYLSQRQQTPVVAFTFSR 585

Query:   452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KGLLK-GVAAHH 506
               CD   + L   +L    E SE+   L++         R+ P I   + LLK G+  HH
Sbjct:   586 TRCDENARSLTSLDLTTSIEKSEIHSFLQKSLTRLRGGDRQLPQILLMRDLLKRGIGVHH 645

Query:   507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
             +G LPI K  IE LF RGLVKV+FATET A G+NMPART V  S+ K   +G   L   E
Sbjct:   646 SGILPILKEVIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGE 705

Query:   567 LFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
               QMAGRAGRRG+D  G V+++ +       E   ++      L SQF  +Y M+LNLL
Sbjct:   706 YIQMAGRAGRRGLDATGTVIILCKAGVHDMGELHSMMLGKPTVLHSQFRLTYTMILNLL 764

 Score = 447 (162.4 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
 Identities = 114/290 (39%), Positives = 162/290 (55%)

Query:   156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALS 215
             Y F +D FQ+ +I       SV V+A TS+GKT++          +  R  YT+P+KALS
Sbjct:   315 YPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMTRTIYTSPIKALS 374

Query:   216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
             NQKFR+F+ TFGD  VGLLTGD  +N E   LIMTTEILR+MLY    ++       D++
Sbjct:   375 NQKFRDFKNTFGD--VGLLTGDVQLNPEGSCLIMTTEILRSMLYNGSEVIR------DLE 426

Query:   276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
              ++ DEVHY++D  RG VWEE++I  P+ V II LSATV NA E + WIG+I  +   +I
Sbjct:   427 WVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVEFSEWIGRIKKRHIYVI 486

Query:   335 TSSRRPVPLTWYF----STKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
             ++ +RPVPL  Y     STKT   L  LLD  G  + +     Y     + V+  K+  S
Sbjct:   487 STIKRPVPLEHYLYTGNSTKTQKELFMLLDATGNFLTK----GYY----AAVEAKKERTS 538

Query:   389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI-RRSQVPQVIDTLWHLR 437
             +   S    +++ +N  T+     + +  +N + +R Q P V  T    R
Sbjct:   539 KHAQSFGTKNVSQHN-TTASQDRAVWQTLLNYLSQRQQTPVVAFTFSRTR 587

 Score = 39 (18.8 bits), Expect = 6.2e-44, Sum P(2) = 6.2e-44
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query:   735 RFSALKDILKDFENGHLPFLCLQY 758
             R   L+D LKDF   H P    Q+
Sbjct:  1004 RQRVLQDSLKDFHCIHSPTFSEQF 1027


>UNIPROTKB|F5H7B0 [details] [associations]
            symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 EMBL:AL645922
            InterPro:IPR025696 Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L
            IPI:IPI01021910 SMR:F5H7B0 Ensembl:ENST00000544581
            Ensembl:ENST00000546549 Uniprot:F5H7B0
        Length = 1053

 Score = 487 (176.5 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 140/382 (36%), Positives = 195/382 (51%)

Query:   253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 312
             I+   + +S+ + S    + D++ ++ DEVHY++D+ RG VWEE++I  P  V II LSA
Sbjct:   204 IMTTEILRSM-LYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSA 262

Query:   313 TVANADELAGWIGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 371
             TV NA E A WIG++  +   + S+  RPVPL  Y  T  +       +G+     L L 
Sbjct:   263 TVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSS----KTQGE-----LFLL 313

Query:   372 YLQLSTSEVKPYKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 430
                      K Y     +++    KHA         +FG  Q +     A  R      +
Sbjct:   314 LDSRGAFHTKGYYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---L 362

Query:   431 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 490
               L  LR+R  LP + F F+R  CD     L   +L    E SE+ L L+R       + 
Sbjct:   363 SLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD 422

Query:   491 RE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
             R+ P +     LL +G+  HH+G LPI K  +E LF RGLVKV+FATET A G+NMPART
Sbjct:   423 RQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPART 482

Query:   546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLL 602
              V  S+ K   S    L   E  QMAGRAGRRG+D  G V+L+   + P E A+   +++
Sbjct:   483 VVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMM 540

Query:   603 FAGVEPLVSQFTASYGMVLNLL 624
                   L SQF  +Y M+LNLL
Sbjct:   541 MGKPSQLQSQFRLTYTMILNLL 562

 Score = 438 (159.2 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
 Identities = 100/211 (47%), Positives = 131/211 (62%)

Query:   158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALSNQ 217
             F  D FQ+ +I    R  SV V+A TS+GKT++          +  R  YT+P+KALSNQ
Sbjct:   116 FEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQ 175

Query:   218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
             KFR+FR TFGD  VGLLTGD  ++ EA  LIMTTEILR+MLY    ++       D++ +
Sbjct:   176 KFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWV 227

Query:   278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
             + DEVHY++D+ RG VWEE++I  P  V II LSATV NA E A WIG++  +   + S+
Sbjct:   228 IFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST 287

Query:   338 -RRPVPLTWYF----STKTA--LLPLLDEKG 361
               RPVPL  Y     S+KT   L  LLD +G
Sbjct:   288 VTRPVPLEHYLFTGNSSKTQGELFLLLDSRG 318

 Score = 51 (23.0 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query:  1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
             G  A A+   +EL L  ++ +  L  L+P ++AA+ + LV +
Sbjct:   885 GRVACAM-SSHELLLTELMFDNALSTLRPEEIAALLSGLVCQ 925


>UNIPROTKB|F8VS23 [details] [associations]
            symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
            EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
            Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00945125
            SMR:F8VS23 Ensembl:ENST00000546908 Ensembl:ENST00000552714
            Ensembl:ENST00000552746 Ensembl:ENST00000553255 UCSC:uc011ghl.1
            Uniprot:F8VS23
        Length = 1053

 Score = 487 (176.5 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 140/382 (36%), Positives = 195/382 (51%)

Query:   253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 312
             I+   + +S+ + S    + D++ ++ DEVHY++D+ RG VWEE++I  P  V II LSA
Sbjct:   204 IMTTEILRSM-LYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSA 262

Query:   313 TVANADELAGWIGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 371
             TV NA E A WIG++  +   + S+  RPVPL  Y  T  +       +G+     L L 
Sbjct:   263 TVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSS----KTQGE-----LFLL 313

Query:   372 YLQLSTSEVKPYKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 430
                      K Y     +++    KHA         +FG  Q +     A  R      +
Sbjct:   314 LDSRGAFHTKGYYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---L 362

Query:   431 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 490
               L  LR+R  LP + F F+R  CD     L   +L    E SE+ L L+R       + 
Sbjct:   363 SLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD 422

Query:   491 RE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
             R+ P +     LL +G+  HH+G LPI K  +E LF RGLVKV+FATET A G+NMPART
Sbjct:   423 RQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPART 482

Query:   546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLL 602
              V  S+ K   S    L   E  QMAGRAGRRG+D  G V+L+   + P E A+   +++
Sbjct:   483 VVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMM 540

Query:   603 FAGVEPLVSQFTASYGMVLNLL 624
                   L SQF  +Y M+LNLL
Sbjct:   541 MGKPSQLQSQFRLTYTMILNLL 562

 Score = 438 (159.2 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
 Identities = 100/211 (47%), Positives = 131/211 (62%)

Query:   158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALSNQ 217
             F  D FQ+ +I    R  SV V+A TS+GKT++          +  R  YT+P+KALSNQ
Sbjct:   116 FEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQ 175

Query:   218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
             KFR+FR TFGD  VGLLTGD  ++ EA  LIMTTEILR+MLY    ++       D++ +
Sbjct:   176 KFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWV 227

Query:   278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
             + DEVHY++D+ RG VWEE++I  P  V II LSATV NA E A WIG++  +   + S+
Sbjct:   228 IFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST 287

Query:   338 -RRPVPLTWYF----STKTA--LLPLLDEKG 361
               RPVPL  Y     S+KT   L  LLD +G
Sbjct:   288 VTRPVPLEHYLFTGNSSKTQGELFLLLDSRG 318

 Score = 51 (23.0 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query:  1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
             G  A A+   +EL L  ++ +  L  L+P ++AA+ + LV +
Sbjct:   885 GRVACAM-SSHELLLTELMFDNALSTLRPEEIAALLSGLVCQ 925


>UNIPROTKB|F1RQW4 [details] [associations]
            symbol:SKIV2L "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
            GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
            EMBL:CT956038 Ensembl:ENSSSCT00000001566 ArrayExpress:F1RQW4
            Uniprot:F1RQW4
        Length = 1246

 Score = 491 (177.9 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 141/382 (36%), Positives = 197/382 (51%)

Query:   253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 312
             I+   + +S+ + S    + D++ ++ DEVHY++D  RG VWEE++I  P  V II LSA
Sbjct:   397 IMTTEILRSM-LYSGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSA 455

Query:   313 TVANADELAGWIGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 371
             TV NA E A WIG++  +   + S+  RPVPL  Y  T  +  P    +G+     L L 
Sbjct:   456 TVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNS--P--KTQGE-----LFLL 506

Query:   372 YLQLSTSEVKPYKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 430
                  +   K Y     +++    KHA         +FG  Q +     A  R      +
Sbjct:   507 LDSRGSFHTKGYYAAVEAKKERMSKHAQ--------TFGAKQPTNQGGPAQDRGVY---L 555

Query:   431 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 490
               L  LR+R+ LP + F F+R  CD     L   +L    E SE+ L L+R       + 
Sbjct:   556 SLLASLRAREQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD 615

Query:   491 RE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
             R+ P +     LL +G+  HH+G LPI K  +E LF RGLVKV+FATET A G+NMPART
Sbjct:   616 RQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPART 675

Query:   546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLL 602
              V  S+ K   S    L   E  QMAGRAGRRG+D  G V+L+   + P E A+   +++
Sbjct:   676 VVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMM 733

Query:   603 FAGVEPLVSQFTASYGMVLNLL 624
                   L SQF  +Y M+LNLL
Sbjct:   734 MGKPSQLQSQFRLTYTMILNLL 755

 Score = 433 (157.5 bits), Expect = 2.5e-36, Sum P(2) = 2.5e-36
 Identities = 108/250 (43%), Positives = 144/250 (57%)

Query:   119 PAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVV 178
             P P  +EE  W     + + V +F      + + A  + F  D FQ+ +I    R  SV 
Sbjct:   275 PKPPPQEE--WAIPVDVTSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLERHDSVF 329

Query:   179 VSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDS 238
             V+A TS+GKT++          +  R  YT+P+KALSNQKFR+FR TFGD  VGLLTGD 
Sbjct:   330 VAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VGLLTGDV 387

Query:   239 AINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII 298
              ++ EA  LIMTTEILR+MLY    ++       D++ ++ DEVHY++D  RG VWEE++
Sbjct:   388 QLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDAERGVVWEEVL 441

Query:   299 IYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS-RRPVPLTWYFST----KTA- 352
             I  P  V II LSATV NA E A WIG++  +   + S+  RPVPL  Y  T    KT  
Sbjct:   442 IMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNSPKTQG 501

Query:   353 -LLPLLDEKG 361
              L  LLD +G
Sbjct:   502 ELFLLLDSRG 511

 Score = 50 (22.7 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query:  1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
             G  A A+   +EL L  ++ +  L  L+P ++AA+ + LV +
Sbjct:  1078 GRVACAM-SSHELLLTELMFDNALSALRPEEIAALLSGLVCQ 1118


>UNIPROTKB|B4DM01 [details] [associations]
            symbol:SKIV2L "cDNA FLJ57529, highly similar to Helicase
            SKI2W (EC 3.6.1.-)" species:9606 "Homo sapiens" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 eggNOG:COG4581
            InterPro:IPR025696 Pfam:PF13234 UniGene:Hs.89864 HGNC:HGNC:10898
            HOVERGEN:HBG060025 OrthoDB:EOG47H5P5 ChiTaRS:SKIV2L EMBL:AK297230
            IPI:IPI01014021 SMR:B4DM01 STRING:B4DM01 Ensembl:ENST00000551164
            Uniprot:B4DM01
        Length = 1088

 Score = 487 (176.5 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
 Identities = 140/382 (36%), Positives = 195/382 (51%)

Query:   253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 312
             I+   + +S+ + S    + D++ ++ DEVHY++D+ RG VWEE++I  P  V II LSA
Sbjct:   239 IMTTEILRSM-LYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSA 297

Query:   313 TVANADELAGWIGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 371
             TV NA E A WIG++  +   + S+  RPVPL  Y  T  +       +G+     L L 
Sbjct:   298 TVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSS----KTQGE-----LFLL 348

Query:   372 YLQLSTSEVKPYKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 430
                      K Y     +++    KHA         +FG  Q +     A  R      +
Sbjct:   349 LDSRGAFHTKGYYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---L 397

Query:   431 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 490
               L  LR+R  LP + F F+R  CD     L   +L    E SE+ L L+R       + 
Sbjct:   398 SLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD 457

Query:   491 RE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
             R+ P +     LL +G+  HH+G LPI K  +E LF RGLVKV+FATET A G+NMPART
Sbjct:   458 RQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPART 517

Query:   546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLL 602
              V  S+ K   S    L   E  QMAGRAGRRG+D  G V+L+   + P E A+   +++
Sbjct:   518 VVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMM 575

Query:   603 FAGVEPLVSQFTASYGMVLNLL 624
                   L SQF  +Y M+LNLL
Sbjct:   576 MGKPSQLQSQFRLTYTMILNLL 597

 Score = 438 (159.2 bits), Expect = 3.2e-37, Sum P(2) = 3.2e-37
 Identities = 100/211 (47%), Positives = 131/211 (62%)

Query:   158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALSNQ 217
             F  D FQ+ +I    R  SV V+A TS+GKT++          +  R  YT+P+KALSNQ
Sbjct:   151 FEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQ 210

Query:   218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
             KFR+FR TFGD  VGLLTGD  ++ EA  LIMTTEILR+MLY    ++       D++ +
Sbjct:   211 KFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWV 262

Query:   278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
             + DEVHY++D+ RG VWEE++I  P  V II LSATV NA E A WIG++  +   + S+
Sbjct:   263 IFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST 322

Query:   338 -RRPVPLTWYF----STKTA--LLPLLDEKG 361
               RPVPL  Y     S+KT   L  LLD +G
Sbjct:   323 VTRPVPLEHYLFTGNSSKTQGELFLLLDSRG 353

 Score = 51 (23.0 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query:  1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
             G  A A+   +EL L  ++ +  L  L+P ++AA+ + LV +
Sbjct:   920 GRVACAM-SSHELLLTELMFDNALSTLRPEEIAALLSGLVCQ 960


>UNIPROTKB|F8VNU1 [details] [associations]
            symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
            EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
            Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI01022196
            SMR:F8VNU1 Ensembl:ENST00000546742 Ensembl:ENST00000547054
            Ensembl:ENST00000550012 Ensembl:ENST00000550640 UCSC:uc011ghk.1
            Uniprot:F8VNU1
        Length = 1088

 Score = 487 (176.5 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
 Identities = 140/382 (36%), Positives = 195/382 (51%)

Query:   253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 312
             I+   + +S+ + S    + D++ ++ DEVHY++D+ RG VWEE++I  P  V II LSA
Sbjct:   239 IMTTEILRSM-LYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSA 297

Query:   313 TVANADELAGWIGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 371
             TV NA E A WIG++  +   + S+  RPVPL  Y  T  +       +G+     L L 
Sbjct:   298 TVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSS----KTQGE-----LFLL 348

Query:   372 YLQLSTSEVKPYKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 430
                      K Y     +++    KHA         +FG  Q +     A  R      +
Sbjct:   349 LDSRGAFHTKGYYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---L 397

Query:   431 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 490
               L  LR+R  LP + F F+R  CD     L   +L    E SE+ L L+R       + 
Sbjct:   398 SLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD 457

Query:   491 RE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
             R+ P +     LL +G+  HH+G LPI K  +E LF RGLVKV+FATET A G+NMPART
Sbjct:   458 RQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPART 517

Query:   546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLL 602
              V  S+ K   S    L   E  QMAGRAGRRG+D  G V+L+   + P E A+   +++
Sbjct:   518 VVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMM 575

Query:   603 FAGVEPLVSQFTASYGMVLNLL 624
                   L SQF  +Y M+LNLL
Sbjct:   576 MGKPSQLQSQFRLTYTMILNLL 597

 Score = 438 (159.2 bits), Expect = 3.2e-37, Sum P(2) = 3.2e-37
 Identities = 100/211 (47%), Positives = 131/211 (62%)

Query:   158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALSNQ 217
             F  D FQ+ +I    R  SV V+A TS+GKT++          +  R  YT+P+KALSNQ
Sbjct:   151 FEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQ 210

Query:   218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
             KFR+FR TFGD  VGLLTGD  ++ EA  LIMTTEILR+MLY    ++       D++ +
Sbjct:   211 KFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWV 262

Query:   278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
             + DEVHY++D+ RG VWEE++I  P  V II LSATV NA E A WIG++  +   + S+
Sbjct:   263 IFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST 322

Query:   338 -RRPVPLTWYF----STKTA--LLPLLDEKG 361
               RPVPL  Y     S+KT   L  LLD +G
Sbjct:   323 VTRPVPLEHYLFTGNSSKTQGELFLLLDSRG 353

 Score = 51 (23.0 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query:  1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
             G  A A+   +EL L  ++ +  L  L+P ++AA+ + LV +
Sbjct:   920 GRVACAM-SSHELLLTELMFDNALSTLRPEEIAALLSGLVCQ 960


>UNIPROTKB|Q15477 [details] [associations]
            symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0055087 "Ski
            complex" evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=TAS] Reactome:REACT_17015 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 EMBL:AF019413 EMBL:AL662849 EMBL:AL645922
            eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
            HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC EMBL:U09877 EMBL:X98378
            EMBL:Z48796 IPI:IPI00414819 PIR:S56752 RefSeq:NP_008860.4
            UniGene:Hs.89864 ProteinModelPortal:Q15477 SMR:Q15477 IntAct:Q15477
            STRING:Q15477 PhosphoSite:Q15477 DMDM:3123284 PaxDb:Q15477
            PRIDE:Q15477 DNASU:6499 Ensembl:ENST00000375394
            Ensembl:ENST00000383336 Ensembl:ENST00000412823
            Ensembl:ENST00000421789 Ensembl:ENST00000429465
            Ensembl:ENST00000448219 GeneID:6499 KEGG:hsa:6499 UCSC:uc003nyn.1
            CTD:6499 GeneCards:GC06P031926 H-InvDB:HIX0005742
            H-InvDB:HIX0166115 H-InvDB:HIX0166390 H-InvDB:HIX0166908
            H-InvDB:HIX0167165 H-InvDB:HIX0167404 HGNC:HGNC:10898 MIM:600478
            MIM:614602 neXtProt:NX_Q15477 Orphanet:84064 PharmGKB:PA35798
            HOVERGEN:HBG060025 InParanoid:Q15477 OrthoDB:EOG47H5P5
            PhylomeDB:Q15477 ChiTaRS:SKIV2L GenomeRNAi:6499 NextBio:25263
            ArrayExpress:Q15477 Bgee:Q15477 CleanEx:HS_SKIV2L
            Genevestigator:Q15477 Uniprot:Q15477
        Length = 1246

 Score = 487 (176.5 bits), Expect = 2.4e-42, Sum P(2) = 2.4e-42
 Identities = 140/382 (36%), Positives = 195/382 (51%)

Query:   253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 312
             I+   + +S+ + S    + D++ ++ DEVHY++D+ RG VWEE++I  P  V II LSA
Sbjct:   397 IMTTEILRSM-LYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSA 455

Query:   313 TVANADELAGWIGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 371
             TV NA E A WIG++  +   + S+  RPVPL  Y  T  +       +G+     L L 
Sbjct:   456 TVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSS----KTQGE-----LFLL 506

Query:   372 YLQLSTSEVKPYKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 430
                      K Y     +++    KHA         +FG  Q +     A  R      +
Sbjct:   507 LDSRGAFHTKGYYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---L 555

Query:   431 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 490
               L  LR+R  LP + F F+R  CD     L   +L    E SE+ L L+R       + 
Sbjct:   556 SLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD 615

Query:   491 RE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
             R+ P +     LL +G+  HH+G LPI K  +E LF RGLVKV+FATET A G+NMPART
Sbjct:   616 RQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPART 675

Query:   546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLL 602
              V  S+ K   S    L   E  QMAGRAGRRG+D  G V+L+   + P E A+   +++
Sbjct:   676 VVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMM 733

Query:   603 FAGVEPLVSQFTASYGMVLNLL 624
                   L SQF  +Y M+LNLL
Sbjct:   734 MGKPSQLQSQFRLTYTMILNLL 755

 Score = 438 (159.2 bits), Expect = 5.5e-37, Sum P(2) = 5.5e-37
 Identities = 100/211 (47%), Positives = 131/211 (62%)

Query:   158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALSNQ 217
             F  D FQ+ +I    R  SV V+A TS+GKT++          +  R  YT+P+KALSNQ
Sbjct:   309 FEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQ 368

Query:   218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
             KFR+FR TFGD  VGLLTGD  ++ EA  LIMTTEILR+MLY    ++       D++ +
Sbjct:   369 KFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWV 420

Query:   278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
             + DEVHY++D+ RG VWEE++I  P  V II LSATV NA E A WIG++  +   + S+
Sbjct:   421 IFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST 480

Query:   338 -RRPVPLTWYF----STKTA--LLPLLDEKG 361
               RPVPL  Y     S+KT   L  LLD +G
Sbjct:   481 VTRPVPLEHYLFTGNSSKTQGELFLLLDSRG 511

 Score = 51 (23.0 bits), Expect = 2.4e-42, Sum P(2) = 2.4e-42
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query:  1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
             G  A A+   +EL L  ++ +  L  L+P ++AA+ + LV +
Sbjct:  1078 GRVACAM-SSHELLLTELMFDNALSTLRPEEIAALLSGLVCQ 1118


>UNIPROTKB|E1BMS0 [details] [associations]
            symbol:LOC100139548 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
            GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
            EMBL:DAAA02055371 IPI:IPI00690289 RefSeq:XP_003583920.1
            RefSeq:XP_003587743.1 Ensembl:ENSBTAT00000007339 GeneID:100139548
            KEGG:bta:100139548 Uniprot:E1BMS0
        Length = 1246

 Score = 485 (175.8 bits), Expect = 4.0e-42, Sum P(2) = 4.0e-42
 Identities = 141/382 (36%), Positives = 195/382 (51%)

Query:   253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 312
             I+   + +S+ + S    + D++ ++ DEVHY++D  RG VWEE++I  P  V II LSA
Sbjct:   397 IMTTEILRSM-LYSGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSA 455

Query:   313 TVANADELAGWIGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 371
             TV NA E A WIG++  +   + S+  RPVPL  Y  T  +  P    +G+     L L 
Sbjct:   456 TVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNS--P--KTQGE-----LFLL 506

Query:   372 YLQLSTSEVKPYKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 430
                      K Y     +++    KHA         +FG  Q +     A  R      +
Sbjct:   507 LDSRGAFHTKGYYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---L 555

Query:   431 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 490
               L  LR+R  LP + F F+R  CD     L   +L    E SE+ L L+R       + 
Sbjct:   556 SLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD 615

Query:   491 RE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
             R+ P +     LL +G+  HH+G LPI K  +E LF RGLVKV+FATET A G+NMPART
Sbjct:   616 RQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPART 675

Query:   546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLL 602
              V  S+ K   S    L   E  QMAGRAGRRG+D  G V+L+   + P E A+   +++
Sbjct:   676 VVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMM 733

Query:   603 FAGVEPLVSQFTASYGMVLNLL 624
                   L SQF  +Y M+LNLL
Sbjct:   734 MGKPSQLQSQFRLTYTMILNLL 755

 Score = 432 (157.1 bits), Expect = 2.5e-36, Sum P(2) = 2.5e-36
 Identities = 100/211 (47%), Positives = 129/211 (61%)

Query:   158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALSNQ 217
             F  D FQ+ +I    R  SV V+A TS+GKT++          +  R  YT+P+KALSNQ
Sbjct:   309 FEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQ 368

Query:   218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
             KFR+FR TFGD  VGLLTGD  ++ EA  LIMTTEILR+MLY    ++       D++ +
Sbjct:   369 KFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWV 420

Query:   278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
             + DEVHY++D  RG VWEE++I  P  V II LSATV NA E A WIG++  +   + S+
Sbjct:   421 IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST 480

Query:   338 -RRPVPLTWYFST----KTA--LLPLLDEKG 361
               RPVPL  Y  T    KT   L  LLD +G
Sbjct:   481 VARPVPLEHYLFTGNSPKTQGELFLLLDSRG 511

 Score = 51 (23.0 bits), Expect = 4.0e-42, Sum P(2) = 4.0e-42
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query:  1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
             G  A A+   +EL L  ++ +  L  L+P ++AA+ + LV +
Sbjct:  1078 GRVACAM-SSHELLLTELMFDNALSTLRPEEIAALLSGLVCQ 1118


>UNIPROTKB|F1LP39 [details] [associations]
            symbol:Skiv2l "Protein Skiv2l" species:10116 "Rattus
            norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
            PROSITE:PS51194 SMART:SM00490 RGD:1303059 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
            OMA:TRLDETC GeneTree:ENSGT00690000102154 IPI:IPI00417365
            Ensembl:ENSRNOT00000000481 Uniprot:F1LP39
        Length = 1206

 Score = 485 (175.8 bits), Expect = 4.4e-42, Sum P(2) = 4.4e-42
 Identities = 141/382 (36%), Positives = 196/382 (51%)

Query:   253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 312
             I+   + +S+ + S    + D++ ++ DEVHY++D  RG VWEE++I  P+ V II LSA
Sbjct:   356 IMTTEILRSM-LYSGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSA 414

Query:   313 TVANADELAGWIGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 371
             TV NA E A WIG++  +   + S+  RPVPL  Y  T  +  P    +G+     L L 
Sbjct:   415 TVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNS--P--KTQGE-----LFLL 465

Query:   372 YLQLSTSEVKPYKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 430
                      K Y     +++    KHA         +FG  Q +     A  R      +
Sbjct:   466 LDSRGAFHTKGYYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---L 514

Query:   431 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 490
               L  LR+R  LP + F F+R  CD     L   +L    E SE+ L L+R       + 
Sbjct:   515 ALLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD 574

Query:   491 RE-PAI---KGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
             R+ P +     LL+ G+  HH+G LPI K  +E LF RGLVKV+FATET A G+NMPART
Sbjct:   575 RQLPQVLHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPART 634

Query:   546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLL 602
              V  S+ K   S    L   E  QMAGRAGRRG+D  G V+L+   + P E A+   +++
Sbjct:   635 VVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMM 692

Query:   603 FAGVEPLVSQFTASYGMVLNLL 624
                   L SQF  +Y M+LNLL
Sbjct:   693 MGKPSQLQSQFRLTYTMILNLL 714

 Score = 430 (156.4 bits), Expect = 4.6e-36, Sum P(2) = 4.6e-36
 Identities = 99/211 (46%), Positives = 130/211 (61%)

Query:   158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALSNQ 217
             F  D FQ+ +I    +  SV V+A TS+GKT++          +  R  YT+P+KALSNQ
Sbjct:   268 FEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQ 327

Query:   218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
             KFR+FR TFGD  VGLLTGD  ++ EA  LIMTTEILR+MLY    ++       D++ +
Sbjct:   328 KFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWV 379

Query:   278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
             + DEVHY++D  RG VWEE++I  P+ V II LSATV NA E A WIG++  +   + S+
Sbjct:   380 IFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQIYVIST 439

Query:   338 -RRPVPLTWYFST----KTA--LLPLLDEKG 361
               RPVPL  Y  T    KT   L  LLD +G
Sbjct:   440 VARPVPLEHYLFTGNSPKTQGELFLLLDSRG 470

 Score = 50 (22.7 bits), Expect = 4.4e-42, Sum P(2) = 4.4e-42
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query:  1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
             G  A A+   +EL L  ++ +  L  L+P ++AA+ + LV +
Sbjct:  1038 GRVACAM-SSHELLLTELMFDNALSALRPEEIAALLSGLVCQ 1078


>RGD|1303059 [details] [associations]
            symbol:Skiv2l "superkiller viralicidic activity 2-like (S.
            cerevisiae )" species:10116 "Rattus norvegicus" [GO:0055087 "Ski
            complex" evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
            RGD:1303059 GO:GO:0005524 GO:GO:0003676 EMBL:BX883045
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 HOGENOM:HOG000163048
            KO:K12599 CTD:6499 HOVERGEN:HBG060025 OrthoDB:EOG47H5P5
            IPI:IPI00417365 RefSeq:NP_998724.1 UniGene:Rn.138027
            ProteinModelPortal:Q6MG76 IntAct:Q6MG76 PhosphoSite:Q6MG76
            PRIDE:Q6MG76 GeneID:294260 KEGG:rno:294260 UCSC:RGD:1303059
            InParanoid:Q6MG76 NextBio:637849 ArrayExpress:Q6MG76
            Genevestigator:Q6MG76 Uniprot:Q6MG76
        Length = 1241

 Score = 485 (175.8 bits), Expect = 5.0e-42, Sum P(2) = 5.0e-42
 Identities = 141/382 (36%), Positives = 196/382 (51%)

Query:   253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 312
             I+   + +S+ + S    + D++ ++ DEVHY++D  RG VWEE++I  P+ V II LSA
Sbjct:   391 IMTTEILRSM-LYSGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSA 449

Query:   313 TVANADELAGWIGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 371
             TV NA E A WIG++  +   + S+  RPVPL  Y  T  +  P    +G+     L L 
Sbjct:   450 TVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNS--P--KTQGE-----LFLL 500

Query:   372 YLQLSTSEVKPYKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 430
                      K Y     +++    KHA         +FG  Q +     A  R      +
Sbjct:   501 LDSRGAFHTKGYYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---L 549

Query:   431 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 490
               L  LR+R  LP + F F+R  CD     L   +L    E SE+ L L+R       + 
Sbjct:   550 ALLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD 609

Query:   491 RE-PAI---KGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
             R+ P +     LL+ G+  HH+G LPI K  +E LF RGLVKV+FATET A G+NMPART
Sbjct:   610 RQLPQVLHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPART 669

Query:   546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLL 602
              V  S+ K   S    L   E  QMAGRAGRRG+D  G V+L+   + P E A+   +++
Sbjct:   670 VVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMM 727

Query:   603 FAGVEPLVSQFTASYGMVLNLL 624
                   L SQF  +Y M+LNLL
Sbjct:   728 MGKPSQLQSQFRLTYTMILNLL 749

 Score = 430 (156.4 bits), Expect = 5.2e-36, Sum P(2) = 5.2e-36
 Identities = 99/211 (46%), Positives = 130/211 (61%)

Query:   158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALSNQ 217
             F  D FQ+ +I    +  SV V+A TS+GKT++          +  R  YT+P+KALSNQ
Sbjct:   303 FEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQ 362

Query:   218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
             KFR+FR TFGD  VGLLTGD  ++ EA  LIMTTEILR+MLY    ++       D++ +
Sbjct:   363 KFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWV 414

Query:   278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
             + DEVHY++D  RG VWEE++I  P+ V II LSATV NA E A WIG++  +   + S+
Sbjct:   415 IFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQIYVIST 474

Query:   338 -RRPVPLTWYFST----KTA--LLPLLDEKG 361
               RPVPL  Y  T    KT   L  LLD +G
Sbjct:   475 VARPVPLEHYLFTGNSPKTQGELFLLLDSRG 505

 Score = 50 (22.7 bits), Expect = 5.0e-42, Sum P(2) = 5.0e-42
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query:  1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
             G  A A+   +EL L  ++ +  L  L+P ++AA+ + LV +
Sbjct:  1073 GRVACAM-SSHELLLTELMFDNALSALRPEEIAALLSGLVCQ 1113


>UNIPROTKB|E2RSD6 [details] [associations]
            symbol:SKIV2L "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0055087 "Ski complex" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
            GO:GO:0055087 KO:K12599 OMA:TRLDETC GeneTree:ENSGT00690000102154
            CTD:6499 EMBL:AAEX03008222 RefSeq:XP_538841.2
            ProteinModelPortal:E2RSD6 Ensembl:ENSCAFT00000001053 GeneID:481720
            KEGG:cfa:481720 NextBio:20856463 Uniprot:E2RSD6
        Length = 1246

 Score = 485 (175.8 bits), Expect = 5.1e-42, Sum P(2) = 5.1e-42
 Identities = 141/382 (36%), Positives = 195/382 (51%)

Query:   253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 312
             I+   + +S+ + S    + D++ ++ DEVHY++D  RG VWEE++I  P  V II LSA
Sbjct:   397 IMTTEILRSM-LYSGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSA 455

Query:   313 TVANADELAGWIGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 371
             TV NA E A WIG++  +   + S+  RPVPL  Y  T  +  P    +G+     L L 
Sbjct:   456 TVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNS--P--KTQGE-----LFLL 506

Query:   372 YLQLSTSEVKPYKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 430
                      K Y     +++    KHA         +FG  Q +     A  R      +
Sbjct:   507 LDSRGAFHTKGYYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---L 555

Query:   431 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 490
               L  LR+R  LP + F F+R  CD     L   +L    E SE+ L L+R       + 
Sbjct:   556 SLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD 615

Query:   491 RE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
             R+ P +     LL +G+  HH+G LPI K  +E LF RGLVKV+FATET A G+NMPART
Sbjct:   616 RQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPART 675

Query:   546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLL 602
              V  S+ K   S    L   E  QMAGRAGRRG+D  G V+L+   + P E A+   +++
Sbjct:   676 VVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMM 733

Query:   603 FAGVEPLVSQFTASYGMVLNLL 624
                   L SQF  +Y M+LNLL
Sbjct:   734 MGKPSQLQSQFRLTYTMILNLL 755

 Score = 434 (157.8 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
 Identities = 100/213 (46%), Positives = 130/213 (61%)

Query:   156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALS 215
             + F  D FQ+ +I    R  SV V+A TS+GKT++          +  R  YT+P+KALS
Sbjct:   307 WSFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS 366

Query:   216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
             NQKFR+FR TFGD  VGLLTGD  ++ EA  LIMTTEILR+MLY    ++       D++
Sbjct:   367 NQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLE 418

Query:   276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELIT 335
              ++ DEVHY++D  RG VWEE++I  P  V II LSATV NA E A WIG++  +   + 
Sbjct:   419 WVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVI 478

Query:   336 SS-RRPVPLTWYFST----KTA--LLPLLDEKG 361
             S+  RPVPL  Y  T    KT   L  LLD +G
Sbjct:   479 STVARPVPLEHYLFTGNSPKTQGELFLLLDSRG 511

 Score = 50 (22.7 bits), Expect = 5.1e-42, Sum P(2) = 5.1e-42
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query:  1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
             G  A A+   +EL L  ++ +  L  L+P ++AA+ + LV +
Sbjct:  1078 GRVACAM-SSHELLLTELMFDNALSALRPEEIAALLSGLVCQ 1118


>UNIPROTKB|F1N993 [details] [associations]
            symbol:F1N993 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000178 "exosome (RNase
            complex)" evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0003676 GO:GO:0000178 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000460
            GO:GO:0008026 GeneTree:ENSGT00690000102230 OMA:ENFQKAM
            InterPro:IPR025696 Pfam:PF13234 EMBL:AADN02054537 EMBL:AADN02054530
            EMBL:AADN02054531 EMBL:AADN02054532 EMBL:AADN02054533
            EMBL:AADN02054534 EMBL:AADN02054535 EMBL:AADN02054536
            IPI:IPI00599020 Ensembl:ENSGALT00000023719 Uniprot:F1N993
        Length = 1031

 Score = 317 (116.6 bits), Expect = 7.8e-42, Sum P(3) = 7.8e-42
 Identities = 94/263 (35%), Positives = 137/263 (52%)

Query:   436 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 493
             +  R+  P I F F+++ C+A A+Q  + D N  +E +M E E+       L  +  + P
Sbjct:   370 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFNNAIDCLSDEDKKLP 428

Query:   494 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
              ++ +L    +G+  HH G LPI K  IE LF  GL+K +FATET A GINMPART + +
Sbjct:   429 QVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 488

Query:   550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
             S SK        ++S E  QM+GRAGRRG+D+RG V+L+           +LL    +PL
Sbjct:   489 SASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPL 548

Query:   610 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSL----EEARKLVEQSFGNYV-- 663
              S F  +Y MVLNLL   ++             Q  R++    E+  KL EQ +   V  
Sbjct:   549 NSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVNKLEEQ-YNKIVIP 607

Query:   664 -GSNVMLAAK--DELCKIQKETD 683
                NV++  K   +L K+ KE +
Sbjct:   608 NEENVVIYYKIRQQLAKLGKEIE 630

 Score = 232 (86.7 bits), Expect = 7.8e-42, Sum P(3) = 7.8e-42
 Identities = 64/181 (35%), Positives = 93/181 (51%)

Query:   185 SGKTL-IXXXXXXXXXXNQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINRE 243
             SG T+ +           ++R+ +T+P+KALSNQK+RE  E F D  VGL+TGD  IN  
Sbjct:   153 SGSTITLLKYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQD--VGLMTGDVTINPT 210

Query:   244 AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK 303
             A  L+MTTEILR+MLY+      SE  + +V  ++ DE+HY+ D  +G   +  I+  P 
Sbjct:   211 ASCLVMTTEILRSMLYRG-----SEV-MREVAWVIFDEIHYMRDSEKGNFEDIFIVAIPG 264

Query:   304 EVQIICLSATVANADELAGWI-GQIHGKTELITSSRRPVPLTWYF--STKTALLPLLDEK 360
                 I +  +    D  A  I   I     +I +  RP PL  Y   +    L  ++DE 
Sbjct:   265 NTLYIIMELSYYLGDGFAEKIIFSIKQPCHVIYTDYRPTPLQHYIFPAGGDGLRLVVDEN 324

Query:   361 G 361
             G
Sbjct:   325 G 325

 Score = 51 (23.0 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
 Identities = 31/130 (23%), Positives = 55/130 (42%)

Query:   630 MHLSNESDDMKALQAGRSLEE--ARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTS 687
             M +     ++K  +    ++E   RK V +  G    S+V+       C+I    ++L +
Sbjct:   819 MDIKAAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLT 878

Query:   688 EIS-----DDAIDRKSRRLLSEAAYKEMAN----LQEELKAEKRFRTELRRRMELKRFSA 738
             E+      +D    ++  LLS   ++E +N    L E+L    R   E  +R  + R SA
Sbjct:   879 EMMFNGLFNDLSAEQATALLSCFVFQENSNEMPKLTEQLAGPLRQMQECAKR--IARVSA 936

Query:   739 LKDILKDFEN 748
                +  D EN
Sbjct:   937 EAKLEIDEEN 946

 Score = 37 (18.1 bits), Expect = 7.8e-42, Sum P(3) = 7.8e-42
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query:   704 EAAYK---EMANLQEELKAEKRFRTELRRRMELKRFSALKDILK 744
             E  YK     A +  ++KA KR   + R  +++      K +L+
Sbjct:   805 ETIYKLCERKAQIAMDIKAAKRELKKARTVLQMDELKCRKRVLR 848


>CGD|CAL0003794 [details] [associations]
            symbol:orf19.1335 species:5476 "Candida albicans" [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0034459 "ATP-dependent
            3'-5' RNA helicase activity" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0031499 "TRAMP complex" evidence=IEA] [GO:0034476
            "U5 snRNA 3'-end processing" evidence=IEA] [GO:0071049 "nuclear
            retention of pre-mRNA with aberrant 3'-ends at the site of
            transcription" evidence=IEA] [GO:0000467 "exonucleolytic trimming
            to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
            transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            [GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
            process" evidence=IEA] [GO:0043629 "ncRNA polyadenylation"
            evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
            processing" evidence=IEA] [GO:0071042 "nuclear
            polyadenylation-dependent mRNA catabolic process" evidence=IEA]
            [GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
            process" evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
            CGD:CAL0003794 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581
            EMBL:AACQ01000188 EMBL:AACQ01000187 KO:K12598 InterPro:IPR025696
            Pfam:PF13234 RefSeq:XP_711657.1 RefSeq:XP_711675.1
            RefSeq:XP_888948.1 STRING:Q59PN6 GeneID:3646717 GeneID:3646739
            GeneID:3703907 KEGG:cal:CaO19.1335 KEGG:cal:CaO19.8915
            KEGG:cal:CaO19_1335 Uniprot:Q59PN6
        Length = 1106

 Score = 447 (162.4 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
 Identities = 124/362 (34%), Positives = 183/362 (50%)

Query:   273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
             +V  +V DEVHY+ D SRG VWEE II  P +V  + LSAT+ NA E A WI +IH +  
Sbjct:   290 EVAWVVFDEVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKIHNQPC 349

Query:   332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
              ++ +  RP PL  Y   +    +  ++DEKG             +S +         S 
Sbjct:   350 HVVYTDFRPTPLQHYLFPAGGDGIHLVVDEKGTFREENFQKAMATISDNSGDDPASSDSG 409

Query:   390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
             R N +   +   N        HQ  K  I  I    V  +     +++  +  P I F F
Sbjct:   410 RGNKKGKTNKGRN--------HQDGKGDIYKI----VKMI-----YMKKYN--PVIVFSF 450

Query:   450 NRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVA 503
             ++R C++    +   +   DE   S  ++      +L P+A RE P IK +L    +G+ 
Sbjct:   451 SKRDCESLALKMSKLDFNTDEERNSLTQIFYNAIELL-PEADRELPQIKNILPLLKRGIG 509

Query:   504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
              HH+G LPI K  IE LFQ G +KV+FATET + G+NMPA+T V +S+ K    G   ++
Sbjct:   510 IHHSGLLPILKEIIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGVGFRWVS 569

Query:   564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG-VEPLVSQFTASYGMVLN 622
               E  QM+GRAGRRG+D+RG +V++    +   +  K +  G  + L S F   Y M+LN
Sbjct:   570 GGEYIQMSGRAGRRGLDDRG-IVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILN 628

Query:   623 LL 624
             L+
Sbjct:   629 LM 630

 Score = 428 (155.7 bits), Expect = 3.8e-39, Sum P(2) = 3.8e-39
 Identities = 102/254 (40%), Positives = 142/254 (55%)

Query:   153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLK 212
             A  Y F +D FQ ++I    R  SV+VSA TS+GKT++          +++R+ YT+P+K
Sbjct:   178 ARTYPFTLDPFQDTAISCIDRNESVLVSAHTSAGKTVVAEYAIAQSLRDKQRVIYTSPIK 237

Query:   213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
             ALSNQKFRE +  FGD  VGL+TGD  IN +A  L+MTTEILR+MLY+      SE  + 
Sbjct:   238 ALSNQKFRELQAIFGD--VGLMTGDVTINPDAGCLVMTTEILRSMLYRG-----SEV-MR 289

Query:   273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
             +V  +V DEVHY+ D SRG VWEE II  P +V  + LSAT+ NA E A WI +IH +  
Sbjct:   290 EVAWVVFDEVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKIHNQPC 349

Query:   332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
              ++ +  RP PL  Y   +    +  ++DEKG             +S +         S 
Sbjct:   350 HVVYTDFRPTPLQHYLFPAGGDGIHLVVDEKGTFREENFQKAMATISDNSGDDPASSDSG 409

Query:   390 RRNSRKHADMNSNN 403
             R N +   +   N+
Sbjct:   410 RGNKKGKTNKGRNH 423

 Score = 80 (33.2 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
 Identities = 44/228 (19%), Positives = 98/228 (42%)

Query:   920 ENYKEQRTKVARLKKKIARTEGFKEYKKIVDT-VKFTEEKIKRLKARSKRLTKRIEQIEP 978
             +++K+   K+  L  KI  +       ++ D   K+T  K+  L  + K+L ++I Q + 
Sbjct:   852 DDFKKLLQKIDILDSKIV-SNPLNNSARLDDLYAKYTA-KVD-LNNQIKKLEEQIFQAKS 908

Query:   979 SGWKEFLRISNVIHETRALDI--NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKP 1036
                 +  ++SN+    + L+   + +V+   G  AA +   +EL +  +L +    +L P
Sbjct:   909 I--IQLDQLSNMKRVLKKLEFTGSEEVVELKGRVAAELSTGDELMITELLFSGFFNELTP 966

Query:  1037 AQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDE-HRSSFLELQEKHGVEIP 1095
              Q+  + ++ + +     L K    + EP+  +    N + +  + S LE+ EK  +E  
Sbjct:   967 QQICGLLSAFIFQERAKELPKLKPELAEPAKVIHETANKIAKISKQSGLEIVEKDYIEQ- 1025

Query:  1096 CCLDSQFSGMVEAWASGLTWREMMMXXXXXXXXXXXXXXXTIDLLAQI 1143
                +     +V  W++G ++  +                  I+L+ Q+
Sbjct:  1026 --FNLALVEVVFVWSNGASFSSICKMTDIYEGSIIRALRREIELIKQL 1071

 Score = 71 (30.1 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
 Identities = 34/169 (20%), Positives = 74/169 (43%)

Query:   586 VLVQTPYEGAEECCKLLFAGVEPLVS--QFTASY-GMVLNLLAGAKVMHLSNESDDMKAL 642
             + + +P    ++   +L  G+ P  S  Q  A +  + L+ +     + L    DD K+ 
Sbjct:   759 MFIDSPVNLIKKFNPMLPEGIRPAKSGEQTRAEFISITLSSIEKISTVRL-RVPDDYKSS 817

Query:   643 QAGRSLEEARKLVEQSFGNYVGS----NVMLAAKDELCKIQKETDVLTSEISDDAIDRKS 698
              A R+L +  K + +   + +        M    D+  K+ ++ D+L S+I  + ++  +
Sbjct:   818 TAKRTLVKTLKDLPKRLPDGIPLIDPVQSMKITDDDFKKLLQKIDILDSKIVSNPLNNSA 877

Query:   699 RRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFE 747
             R     A Y    +L  ++K  +    + +  ++L + S +K +LK  E
Sbjct:   878 RLDDLYAKYTAKVDLNNQIKKLEEQIFQAKSIIQLDQLSNMKRVLKKLE 926

 Score = 37 (18.1 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query:   944 EYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEP 978
             +YK    T K T   +K LK   KRL   I  I+P
Sbjct:   813 DYKS--STAKRT--LVKTLKDLPKRLPDGIPLIDP 843


>TAIR|locus:2075566 [details] [associations]
            symbol:AT3G46960 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0016817
            "hydrolase activity, acting on acid anhydrides" evidence=IEA]
            [GO:0016818 "hydrolase activity, acting on acid anhydrides, in
            phosphorus-containing anhydrides" evidence=IEA] [GO:0005773
            "vacuole" evidence=IDA] [GO:0006813 "potassium ion transport"
            evidence=IMP] [GO:0035864 "response to potassium ion" evidence=IMP]
            [GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0031048
            "chromatin silencing by small RNA" evidence=RCA] [GO:0045132
            "meiotic chromosome segregation" evidence=RCA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005773
            EMBL:CP002686 GO:GO:0003676 GO:GO:0006813 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
            Pfam:PF13234 KO:K12599 OMA:TRLDETC IPI:IPI00544785
            RefSeq:NP_190280.5 UniGene:At.28750 UniGene:At.48743
            ProteinModelPortal:F4JAA5 SMR:F4JAA5 PRIDE:F4JAA5
            EnsemblPlants:AT3G46960.1 GeneID:823849 KEGG:ath:AT3G46960
            GO:GO:0035864 Uniprot:F4JAA5
        Length = 1347

 Score = 477 (173.0 bits), Expect = 9.5e-40, Sum P(2) = 9.5e-40
 Identities = 118/345 (34%), Positives = 182/345 (52%)

Query:   149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYT 208
             V ++A  + F +D FQ+ +I    +G SV V+A TS+GKT++          +  R  YT
Sbjct:   350 VPDMAIEFPFELDNFQKEAICCLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 409

Query:   209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
              P+K +SNQK+R+F   F   +VGLLTGD +I  EA  LIMTTEILR+MLY+   ++   
Sbjct:   410 APIKTISNQKYRDFCGKF---DVGLLTGDVSIRPEASCLIMTTEILRSMLYRGADIIR-- 464

Query:   269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
                 D++ ++ DEVHY++D+ RG VWEE+II  P+ +  + LSATV N  E A WIG+  
Sbjct:   465 ----DIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTFEFADWIGRTK 520

Query:   329 GKTELIT-SSRRPVPLTW--YFST---KTALLPLLDEKG----KHMNRKLSLNYLQLSTS 378
              K   +T +++RPVPL    ++S    K     +   KG    K   +K + N + ++  
Sbjct:   521 QKEIRVTGTTKRPVPLEHCLFYSGELYKVCENEVFLSKGIKDAKDSQKKKNSNAVSVAPK 580

Query:   379 EV---KPYKDGG-SRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN--AIRRSQVPQVIDT 432
             +      ++DG  S++  +      N ++ V   G+   S NS N  A RRS     +  
Sbjct:   581 QQMGSSAHQDGSKSQKHEAHSRGKQNKHSSVKDVGKSSYSGNSQNNGAFRRSAASNWLLL 640

Query:   433 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL 477
             +  L    +LP + F F++  CD     L   +L    E SE+ +
Sbjct:   641 INKLSKMSLLPVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRV 685

 Score = 336 (123.3 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
 Identities = 90/253 (35%), Positives = 129/253 (50%)

Query:   383 YKDGG-SRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN--AIRRSQVPQVIDTLWHLRSR 439
             ++DG  S++  +      N ++ V   G+   S NS N  A RRS     +  +  L   
Sbjct:   588 HQDGSKSQKHEAHSRGKQNKHSSVKDVGKSSYSGNSQNNGAFRRSAASNWLLLINKLSKM 647

Query:   440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAI--- 495
              +LP + F F++  CD     L   +L    E SE+ +   K F  L       P +   
Sbjct:   648 SLLPVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVLRL 707

Query:   496 KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554
             + LL +G+  HHAG LPI K  +E LF RG++KV+F+TET A G+N PART V  +L K 
Sbjct:   708 QSLLHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDALRKF 767

Query:   555 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVS 611
                   QL   E  QMAGRAGRRG+D  G VV++   + P E   +  +++      L S
Sbjct:   768 DGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDEVPDES--DLRRVIVGSATRLES 825

Query:   612 QFTASYGMVLNLL 624
             QF  +Y M+L+LL
Sbjct:   826 QFRLTYIMILHLL 838

 Score = 38 (18.4 bits), Expect = 9.5e-40, Sum P(2) = 9.5e-40
 Identities = 39/180 (21%), Positives = 72/180 (40%)

Query:   947 KIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFP 1006
             K+ + +K   E IK+ K   K L  ++          F    +V+     +D +  V+  
Sbjct:  1116 KLEEHMKLARE-IKKHKTDLKDLEFQMSDEALLQMPAFQGRIDVLKNIGCID-DDLVVQI 1173

Query:  1007 LGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPS 1066
              G  A  +    EL   + L      +L+P +  A+ ++ V +       KN S+   P+
Sbjct:  1174 KGRVACEMNSGEELICTVCLFENQFEELEPEEAVAIMSAFVFQQ------KNTSA---PT 1224

Query:  1067 TT--VINVINVLDEHRSSFLELQEKHGVEI-P--CCLDSQFSGMVEA---WASGLTWREM 1118
              T  +      L +      ELQ ++ ++I P     ++   G+VE    WA G  + E+
Sbjct:  1225 LTPKLAKAKQRLYDTAIRLGELQAQYNLQIDPEEYAQENLKFGLVEVVYEWAKGTPFAEI 1284


>UNIPROTKB|G4NH56 [details] [associations]
            symbol:MGG_03931 "FRQ-interacting RNA helicase"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005730 GO:GO:0031499 GO:GO:0043629
            GO:GO:0071035 GO:GO:0071038 EMBL:CM001236 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0000467 GO:GO:0071042
            GO:GO:0071051 GO:GO:0008143 GO:GO:0034459 GO:GO:0034475
            GO:GO:0034476 KO:K12598 InterPro:IPR025696 Pfam:PF13234
            GO:GO:0071049 RefSeq:XP_003719933.1 EnsemblFungi:MGG_03931T0
            GeneID:2677161 KEGG:mgr:MGG_03931 Uniprot:G4NH56
        Length = 1102

 Score = 431 (156.8 bits), Expect = 1.9e-39, Sum P(3) = 1.9e-39
 Identities = 124/361 (34%), Positives = 179/361 (49%)

Query:   273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
             +V  +V DE+HY+ D +RG VWEE II  P +V+ + LSAT+ NA + A WI +IH +  
Sbjct:   282 EVGWVVFDEIHYMRDATRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHRQAC 341

Query:   332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
              ++ +  RP PL  Y   +    +  ++DEKG    +K    +++   S      D  S 
Sbjct:   342 HVVYTDFRPTPLQNYVFPAGGDGIYIMVDEKGVFREKK----FMEAIGSIAGKNDDDDSM 397

Query:   390 RRNSRKHADMNS-NNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
              R   K  +  +  N V        SK  I  I    +  ++   +H       P I F 
Sbjct:   398 PRQKGKGKNKKAVKNTVPD------SKADITKI----IKMIMRRAYH-------PVIVFN 440

Query:   449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVA 503
             F++R C+     +   N   E E   VE   +     L  +    P I+ LL    KG+ 
Sbjct:   441 FSKRECENLALKVSTLNFNHESEQKLVEDIFRNAIMSLSEEDQGLPQIQHLLPLLKKGIG 500

Query:   504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
              HH+G LPI K  IE LFQ  L+KV+FATET + G+NMPA+T V S + K        LT
Sbjct:   501 VHHSGLLPILKETIEILFQENLIKVLFATETFSIGLNMPAKTVVFSQVKKFDGVKERPLT 560

Query:   564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLN 622
              +E  QM+GRAGRRG+D+RG +V++    +   E  K +  G +  L S F   Y M+LN
Sbjct:   561 PSEYIQMSGRAGRRGLDDRG-IVIMMIDDKLDPETAKGMVCGQQDRLNSAFHLGYNMILN 619

Query:   623 L 623
             L
Sbjct:   620 L 620

 Score = 430 (156.4 bits), Expect = 2.5e-39, Sum P(3) = 2.5e-39
 Identities = 95/221 (42%), Positives = 135/221 (61%)

Query:   150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTT 209
             +E A  Y F++D FQ  S+ +  R  SV+VSA TS+GKT++            +R+ YT+
Sbjct:   167 EEPARKYAFKLDPFQSISVASIERDESVLVSAHTSAGKTVVAEYAIAHCLKRNQRVIYTS 226

Query:   210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSES 269
             P+KALSNQKFR+F+  FGD  VGL+TGD  IN  A  L+MTTEILR+MLY+    ++ E 
Sbjct:   227 PIKALSNQKFRDFQAEFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRG-SEITREV 283

Query:   270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
             G      +V DE+HY+ D +RG VWEE II  P +V+ + LSAT+ NA + A WI +IH 
Sbjct:   284 GW-----VVFDEIHYMRDATRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHR 338

Query:   330 KT-ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRK 367
             +   ++ +  RP PL  Y   +    +  ++DEKG    +K
Sbjct:   339 QACHVVYTDFRPTPLQNYVFPAGGDGIYIMVDEKGVFREKK 379

 Score = 85 (35.0 bits), Expect = 1.9e-39, Sum P(3) = 1.9e-39
 Identities = 56/264 (21%), Positives = 106/264 (40%)

Query:   920 ENYKEQRTKVARLKKKIART--EGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKR--IEQ 975
             +++K+   K+  L+ ++      G     ++ D  K   E   ++K   + + K   I Q
Sbjct:   847 DSFKKLMRKIEVLESRLLSNPLHGSPNLPELWDKYKIKTELTSQIKETKRAINKSYSIAQ 906

Query:   976 I-EPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDL 1034
             + E       LR  N I+E   + +  +V   +  T       +EL ++ +L N    +L
Sbjct:   907 LDELKSRMRVLRRLNFINENEVVQMKARVACEISSTEG-----HELVISELLFNGFFNEL 961

Query:  1035 KPAQLAAVCASLV----SEG--IKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQE 1088
             +P   AA+ +  V     EG  +K  L K    I+  + T+  +       R S L++ +
Sbjct:   962 EPEVCAAILSCFVFDEKMEGTPLKEDLDKLVREIHAQAKTIARI------SRESKLDVSD 1015

Query:  1089 KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMXXXXXXXXXXXXXXXTIDLLAQIPKLPD 1148
             +   ++   L  Q +  V AWA G  + E+                   +LL Q+ +   
Sbjct:  1016 E---QVVGNLKWQLTETVLAWAKGRPFAEICKMTNAYEGSLVRIMRRLEELLRQMAEAGK 1072

Query:  1149 V--DQRLQKNAVDASNVMDRPPIS 1170
             V   + LQK    A +++ R  +S
Sbjct:  1073 VMGSEMLQKKFEKALSLISRDVVS 1096

 Score = 45 (20.9 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
 Identities = 25/107 (23%), Positives = 45/107 (42%)

Query:   490 VREPAIKGLLKGVAAHHAGCL--PIWKS-FIEELFQRGLVKVVFAT---ETLAAGINMPA 543
             +++ + K L++ +    +  L  P+  S  + EL+ +  +K    +   ET  A IN   
Sbjct:   844 IKDDSFKKLMRKIEVLESRLLSNPLHGSPNLPELWDKYKIKTELTSQIKETKRA-INKSY 902

Query:   544 RTAVLSSLSKRT-ASGRIQ-LTSNELFQMAGRAGRRGIDNRGHVVLV 588
               A L  L  R     R+  +  NE+ QM  R         GH +++
Sbjct:   903 SIAQLDELKSRMRVLRRLNFINENEVVQMKARVACEISSTEGHELVI 949

 Score = 42 (19.8 bits), Expect = 1.9e-39, Sum P(3) = 1.9e-39
 Identities = 12/57 (21%), Positives = 28/57 (49%)

Query:   654 LVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEM 710
             ++E+ F  +  ++ + A + +L ++Q++ D +         D  + R   EA  K+M
Sbjct:   631 MLERCFYQFQNASSVPALEKKLIELQQQRDAMVIPDESTVKDYHTVRQQIEAYKKDM 687

 Score = 38 (18.4 bits), Expect = 4.5e-35, Sum P(2) = 4.5e-35
 Identities = 17/91 (18%), Positives = 31/91 (34%)

Query:   632 LSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISD 691
             +  + D +   Q    LEE ++              M    D   K+ ++ +VL S +  
Sbjct:   806 MPKDMDHLGKSQVSHGLEEVQRRFPDGVPILDPIENMGIKDDSFKKLMRKIEVLESRLLS 865

Query:   692 DAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
             + +            YK    L  ++K  KR
Sbjct:   866 NPLHGSPNLPELWDKYKIKTELTSQIKETKR 896


>ASPGD|ASPL0000070749 [details] [associations]
            symbol:mtr4 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0031499 "TRAMP
            complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:BN001303
            GO:GO:0031499 GO:GO:0043629 GO:GO:0071035 GO:GO:0071038
            EMBL:AACD01000076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0000467 GO:GO:0071042 GO:GO:0071051 GO:GO:0008143
            GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475 GO:GO:0034476
            HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
            Pfam:PF13234 OrthoDB:EOG4S1XG7 GO:GO:0071049 RefSeq:XP_662016.1
            ProteinModelPortal:Q5B4W8 STRING:Q5B4W8
            EnsemblFungi:CADANIAT00006045 GeneID:2872204 KEGG:ani:AN4412.2
            Uniprot:Q5B4W8
        Length = 1073

 Score = 442 (160.7 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
 Identities = 98/251 (39%), Positives = 146/251 (58%)

Query:   153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLK 212
             A ++ F +D FQ+ ++ +  RG SV+VSA TS+GKT++          N +R+ YT+P+K
Sbjct:   146 ARVWPFTLDPFQQVAVSSIQRGESVLVSAHTSAGKTVVAEYAIAQSLKNNQRVIYTSPIK 205

Query:   213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
             ALSNQK+REF   FGD  VGL+TGD  IN  A  L+MTTEILR+MLY+      SE  + 
Sbjct:   206 ALSNQKYREFAAEFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRG-----SEI-MR 257

Query:   273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
             +V  +V DE+HY+ D +RG VWEE II  P +V+ + LSAT+ NA + A WI ++H +  
Sbjct:   258 EVAWVVFDEIHYMRDATRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKMHNQPC 317

Query:   332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
              ++ +  RP PL  YF  +    +  ++DEKG             ++  +     D  ++
Sbjct:   318 HVVYTDFRPTPLQHYFFPAGSEGMHLIVDEKGVFREENFQKAMSSIADKKGDDPADALAK 377

Query:   390 RRNSRKHADMN 400
             R+   K   +N
Sbjct:   378 RKGKGKDKKLN 388

 Score = 435 (158.2 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
 Identities = 118/361 (32%), Positives = 184/361 (50%)

Query:   273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
             +V  +V DE+HY+ D +RG VWEE II  P +V+ + LSAT+ NA + A WI ++H +  
Sbjct:   258 EVAWVVFDEIHYMRDATRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKMHNQPC 317

Query:   332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
              ++ +  RP PL  YF  +    +  ++DEKG             ++  +     D  ++
Sbjct:   318 HVVYTDFRPTPLQHYFFPAGSEGMHLIVDEKGVFREENFQKAMSSIADKKGDDPADALAK 377

Query:   390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
             R+   K   +N        G  +  K+ I  I    V  ++     L+S +  P I F F
Sbjct:   378 RKGKGKDKKLNKG------GTQE--KDDIYKI----VKMIM-----LKSLN--PVIVFSF 418

Query:   450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAA 504
             ++R C+     ++     D+ E   V         +L  +    P I+ +L    +G+  
Sbjct:   419 SKRECEFYALKMKSLAFNDDSEKEMVSKVFNSAIEMLSEEDRNLPQIQNILPLLRRGIGV 478

Query:   505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
             HH+G LPI K  IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K     +  +T 
Sbjct:   479 HHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGFSQRWVTP 538

Query:   565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNL 623
             +E  QM+GRAGRRG+D+RG +V++    E      K +  G +  L S F   Y M+LNL
Sbjct:   539 SEFVQMSGRAGRRGLDDRG-IVIMMIGEEMDPAVAKEIVRGEQDRLNSAFHLGYNMILNL 597

Query:   624 L 624
             +
Sbjct:   598 M 598

 Score = 67 (28.6 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
 Identities = 33/136 (24%), Positives = 61/136 (44%)

Query:   920 ENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKI---KRLKARSKRLTK--RIE 974
             + +K+   K+  L+ ++  T       ++ +  +   EK+    ++KA  K++++   I+
Sbjct:   818 DEFKKTLRKIEVLESRLV-TNPLHNSPRLEELYEQYAEKLDLGNKIKATKKKISEGMAIQ 876

Query:   975 QI-EPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLD 1033
             Q+ E    K  LR    I+E   + +  +V       A  I   +EL L+ +L N     
Sbjct:   877 QLDELKCRKRVLRRFGFINEAEVVQLKARV-------ACEISTGDELMLSELLFNGFFNK 929

Query:  1034 LKPAQLAAVCASLVSE 1049
             L P Q AAV +  V E
Sbjct:   930 LTPEQAAAVLSVFVFE 945

 Score = 59 (25.8 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
 Identities = 24/112 (21%), Positives = 44/112 (39%)

Query:   635 ESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAI 694
             +S D +    G+ +E+ +K              M    DE  K  ++ +VL S +  + +
Sbjct:   781 QSKDSRT-DMGKKVEQIKKRFPDGIAVLDPIEDMGIKDDEFKKTLRKIEVLESRLVTNPL 839

Query:   695 DRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDF 746
                 R       Y E  +L  ++KA K+  +E     +L      K +L+ F
Sbjct:   840 HNSPRLEELYEQYAEKLDLGNKIKATKKKISEGMAIQQLDELKCRKRVLRRF 891

 Score = 45 (20.9 bits), Expect = 4.6e-37, Sum P(2) = 4.6e-37
 Identities = 19/83 (22%), Positives = 38/83 (45%)

Query:   608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV 667
             P + +    Y   L+L  G K+     +  +  A+Q    L+  RK V + FG ++    
Sbjct:   843 PRLEELYEQYAEKLDL--GNKIKATKKKISEGMAIQQLDELK-CRKRVLRRFG-FINEAE 898

Query:   668 MLAAKDEL-CKIQKETDVLTSEI 689
             ++  K  + C+I    +++ SE+
Sbjct:   899 VVQLKARVACEISTGDELMLSEL 921


>FB|FBgn0039117 [details] [associations]
            symbol:tst "twister" species:7227 "Drosophila melanogaster"
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
            InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
            PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
            eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 EMBL:AJ276896
            ProteinModelPortal:Q9BI21 SMR:Q9BI21 STRING:Q9BI21 PaxDb:Q9BI21
            PRIDE:Q9BI21 FlyBase:FBgn0039117 InParanoid:Q9BI21
            OrthoDB:EOG46HDRK ArrayExpress:Q9BI21 Bgee:Q9BI21 Uniprot:Q9BI21
        Length = 1197

 Score = 442 (160.7 bits), Expect = 9.5e-39, Sum P(2) = 9.5e-39
 Identities = 138/399 (34%), Positives = 197/399 (49%)

Query:   273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 331
             D++ ++ DEVHY+++  RG VWEE+II  P+ V II LSATV N  ELA W+G     K 
Sbjct:   368 DLEWVIFDEVHYINNPERGHVWEEVIILLPEHVNIIMLSATVPNTLELADWVGSTKKRKV 427

Query:   332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
              +I++ +RPVPLT +  T           GK  +     +   L  ++ K Y  G   + 
Sbjct:   428 YVISTLKRPVPLTHFLYTGAG--------GKSRD-----DIFLLVDAQGK-YLQGNYEKA 473

Query:   392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
               RK  +M       + G     +N +NA ++ Q    I  +  LR  +M+P + F  +R
Sbjct:   474 VERKK-EMQGK----AKGGGGGPRNHLNA-KQEQYTW-IGLIDFLRRSNMMPVVAFTLSR 526

Query:   452 RGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAI---KGLL-KGVAAHH 506
               CD+ +  L+  +L  E E   V+   L+    L P     P +   K  L +G+  HH
Sbjct:   527 NRCDSNLAALQSVDLNTEKEKGAVQKFFLQCLAKLKPPDRTIPQVLVLKDALERGIGVHH 586

Query:   507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
             +G LPI K  +E LFQ GLVK++FATET A G+NMPART V  S  K        L   E
Sbjct:   587 SGILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPARTVVFDSCKKFDGLEMRNLKPGE 646

Query:   567 LFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
               QMAGRAGRRG D  G  +++ +     + E   ++    E L SQF   Y ++L  L 
Sbjct:   647 YIQMAGRAGRRGHDETGTAIIMCKGSVPPSMELRPMILGLPEKLQSQFILRYAVILTCLR 706

Query:   626 --GAKV---MHLSNESDDMKALQAGRSLEEARKLVEQSF 659
                 KV   M  S +  ++K LQ     ++ R L E  F
Sbjct:   707 IESIKVEDIMKFSFKEFNLK-LQLPTQQKQLR-LAEDKF 743

 Score = 410 (149.4 bits), Expect = 2.9e-35, Sum P(2) = 2.9e-35
 Identities = 105/277 (37%), Positives = 150/277 (54%)

Query:   125 EEFK--WQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAP 182
             + FK  W  +  +   +  F  E I     A  + F +D FQ+ +I    +   V V+A 
Sbjct:   229 KNFKSDWAEMVDISQPINNF-KEQIPCP--AMDFPFELDVFQKQAILKLEQRQYVFVAAH 285

Query:   183 TSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINR 242
             TS+GKT++          +  R  YT+P+KALSNQK+R+FR+TF D  VGL+TGD  I  
Sbjct:   286 TSAGKTVVAEYAIALSKRDLTRTIYTSPIKALSNQKYRDFRKTFKD--VGLITGDLQIEP 343

Query:   243 EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP 302
              A  LIMTTEILR+MLY    +        D++ ++ DEVHY+++  RG VWEE+II  P
Sbjct:   344 TASCLIMTTEILRSMLYCGSDVTR------DLEWVIFDEVHYINNPERGHVWEEVIILLP 397

Query:   303 KEVQIICLSATVANADELAGWIGQIHG-KTELITSSRRPVPLTWYFST------KTALLP 355
             + V II LSATV N  ELA W+G     K  +I++ +RPVPLT +  T      +  +  
Sbjct:   398 EHVNIIMLSATVPNTLELADWVGSTKKRKVYVISTLKRPVPLTHFLYTGAGGKSRDDIFL 457

Query:   356 LLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
             L+D +GK++         +    + K  K GG   RN
Sbjct:   458 LVDAQGKYLQGNYEKAVERKKEMQGKA-KGGGGGPRN 493

 Score = 63 (27.2 bits), Expect = 9.5e-39, Sum P(2) = 9.5e-39
 Identities = 27/108 (25%), Positives = 54/108 (50%)

Query:   941 GFK-EYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI 999
             GF+ E+ K+ +  +  E  I+ L  R K   + +  + P    ++     V+   + +D 
Sbjct:   972 GFEQEFAKVYER-RMLEIHIEEL--RFKNSARNLT-LYP----DYCNKLKVLRALKYIDE 1023

Query:  1000 NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV 1047
               +V    G+ A  + G+NEL +  ++   +  DL+PA++AA+ + LV
Sbjct:  1024 LDEVTLK-GKVACEM-GQNELLITELILCNMFNDLEPAEIAALLSGLV 1069


>DICTYBASE|DDB_G0277211 [details] [associations]
            symbol:DDB_G0277211 "superkiller viralicidic activity
            2-like protein" species:44689 "Dictyostelium discoideum"
            [GO:0016818 "hydrolase activity, acting on acid anhydrides, in
            phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
            "hydrolase activity, acting on acid anhydrides" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0277211 GO:GO:0005524
            GO:GO:0003676 EMBL:AAFI02000019 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 InterPro:IPR025696
            Pfam:PF13234 KO:K12599 OMA:TRLDETC RefSeq:XP_642686.1
            ProteinModelPortal:Q86K90 EnsemblProtists:DDB0233454 GeneID:8620875
            KEGG:ddi:DDB_G0277211 InParanoid:Q86K90 Uniprot:Q86K90
        Length = 1378

 Score = 453 (164.5 bits), Expect = 6.2e-38, Sum P(2) = 6.2e-38
 Identities = 110/298 (36%), Positives = 169/298 (56%)

Query:   138 EVKEFGNEMIDVDELASI-YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXX 196
             E KE  + + D+    +I Y F +D FQ+ +I    +G SV ++A TS+GKT+I      
Sbjct:   411 EQKEITSPLSDLITNPAIEYPFDLDSFQKQAIVHMEQGESVFITAHTSAGKTVIAEYAIA 470

Query:   197 XXXXNQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRN 256
                 N  R  YT+P+KALSNQKFR+F+ TF  N+VGL+TGD +I+  +  L++TTEILR+
Sbjct:   471 MAAKNMTRAIYTSPIKALSNQKFRDFKNTF--NDVGLITGDVSISPSSSCLVLTTEILRS 528

Query:   257 MLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316
             MLY+   ++       D++ ++ DEVHYL+D+ RG VWEE+II  P  V+++ LSATV+N
Sbjct:   529 MLYKGADLIR------DIEWVIFDEVHYLNDLERGVVWEEVIIMLPPYVKMVFLSATVSN 582

Query:   317 ADELAGWIGQIHG-KTELITSSRRPVPLTWYFSTKT-ALLPLLDEKGKHMNRKLSLNYLQ 374
               E A WIG+       +I +++RP+PL  Y  T +  L  ++D     +    +  Y  
Sbjct:   583 PLEFAQWIGRTKQLPIYVIGTTKRPIPLEHYIHTPSNELFKIVDSNRNFLPSGYNSAYNS 642

Query:   375 L-STSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR-RSQVPQVI 430
             L  T   K    GG    N ++     S N ++ +     SK  IN ++ + Q+P +I
Sbjct:   643 LYKTDNNKGGGGGGRGGHNQQQQQRGGSGNNISGW-----SK-LINTLKDKQQLPVII 694

 Score = 444 (161.4 bits), Expect = 5.9e-37, Sum P(2) = 5.9e-37
 Identities = 128/363 (35%), Positives = 182/363 (50%)

Query:   273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 331
             D++ ++ DEVHYL+D+ RG VWEE+II  P  V+++ LSATV+N  E A WIG+      
Sbjct:   539 DIEWVIFDEVHYLNDLERGVVWEEVIIMLPPYVKMVFLSATVSNPLEFAQWIGRTKQLPI 598

Query:   332 ELITSSRRPVPLTWYFSTKT-ALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
              +I +++RP+PL  Y  T +  L  ++D     +    +  Y  L  ++    K GG   
Sbjct:   599 YVIGTTKRPIPLEHYIHTPSNELFKIVDSNRNFLPSGYNSAYNSLYKTDNN--KGGGGGG 656

Query:   391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
             R                  Q Q    S N I  S   ++I+TL   + +  LP I F F+
Sbjct:   657 RGGHNQ-------------QQQQRGGSGNNI--SGWSKLINTL---KDKQQLPVIIFSFS 698

Query:   451 RRGCDAAVQYL-EDCNLLDECEMSEVELALKR-FRILYPDAVREPAI---KGLL-KGVAA 504
             +  C      L +  NL    E S++ + +++    L  D    P I   K LL +G+  
Sbjct:   699 KNKCQEYAGSLGQSVNLTQGNEKSQIRVFIEQSLGRLCEDDKSLPQILQMKELLERGIGV 758

Query:   505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
             HH G LPI K  +E LF + LVKV+FATET A G+NMPA+T V SS  K        L  
Sbjct:   759 HHGGLLPIVKELVEILFSKSLVKVLFATETFAMGVNMPAKTVVYSSTRKHDGITFRDLIP 818

Query:   565 NELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
              E  QM+GRAGRRG+D  G V++      P +   E   ++      L SQF  +Y M+L
Sbjct:   819 GEYTQMSGRAGRRGLDKVGTVIITYWKDIPEQATIE--SMILGTPSRLNSQFRLTYNMIL 876

Query:   622 NLL 624
             NLL
Sbjct:   877 NLL 879

 Score = 46 (21.3 bits), Expect = 6.2e-38, Sum P(2) = 6.2e-38
 Identities = 11/59 (18%), Positives = 29/59 (49%)

Query:   989 NVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV 1047
             +++HE   +D    V    G  +  I    +L +  ++     ++L+P+++ +V + L+
Sbjct:  1190 DILHELGYIDDENTVTLK-GRVSREINTCEDLVITELIFENAFINLEPSEVVSVLSCLI 1247


>SGD|S000003586 [details] [associations]
            symbol:MTR4 "ATP-dependent 3'-5' RNA helicase of the DExD/H
            family" species:4932 "Saccharomyces cerevisiae" [GO:0016491
            "oxidoreductase activity" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0034475 "U4 snRNA 3'-end processing"
            evidence=IMP] [GO:0000467 "exonucleolytic trimming to generate
            mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
            (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016075 "rRNA catabolic process" evidence=IMP] [GO:0043629
            "ncRNA polyadenylation" evidence=IDA] [GO:0071038 "nuclear
            polyadenylation-dependent tRNA catabolic process" evidence=IGI;IDA]
            [GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
            process" evidence=IMP] [GO:0071031 "nuclear mRNA surveillance of
            mRNA 3'-end processing" evidence=IGI;IMP] [GO:0071042 "nuclear
            polyadenylation-dependent mRNA catabolic process" evidence=IMP]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006364 "rRNA
            processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0031499 "TRAMP complex" evidence=IDA;IPI] [GO:0008143 "poly(A)
            RNA binding" evidence=IDA] [GO:0034459 "ATP-dependent 3'-5' RNA
            helicase activity" evidence=IMP;IDA] [GO:0034476 "U5 snRNA 3'-end
            processing" evidence=IMP] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0016818 "hydrolase activity, acting on acid anhydrides, in
            phosphorus-containing anhydrides" evidence=IEA] [GO:0071049
            "nuclear retention of pre-mRNA with aberrant 3'-ends at the site of
            transcription" evidence=IGI] [GO:0016817 "hydrolase activity,
            acting on acid anhydrides" evidence=IEA] [GO:0071051
            "polyadenylation-dependent snoRNA 3'-end processing" evidence=IMP]
            InterPro:IPR001650 InterPro:IPR011254 InterPro:IPR011545
            InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
            SGD:S000003586 GO:GO:0005524 GO:GO:0005730 EMBL:BK006943
            GO:GO:0016491 GO:GO:0031499 GO:GO:0043629 GO:GO:0071035
            GO:GO:0071038 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            SUPFAM:SSF56821 GO:GO:0000467 GO:GO:0071042 GO:GO:0071051
            GO:GO:0008143 GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475
            GO:GO:0034476 GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047
            KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234
            OrthoDB:EOG4S1XG7 GO:GO:0071049 EMBL:Z49325 PIR:S56822
            RefSeq:NP_012485.1 PDB:2XGJ PDB:3L9O PDBsum:2XGJ PDBsum:3L9O
            ProteinModelPortal:P47047 SMR:P47047 DIP:DIP-6394N IntAct:P47047
            MINT:MINT-620894 STRING:P47047 PaxDb:P47047 PeptideAtlas:P47047
            EnsemblFungi:YJL050W GeneID:853397 KEGG:sce:YJL050W CYGD:YJL050w
            EvolutionaryTrace:P47047 NextBio:973882 Genevestigator:P47047
            GermOnline:YJL050W Uniprot:P47047
        Length = 1073

 Score = 426 (155.0 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
 Identities = 97/215 (45%), Positives = 135/215 (62%)

Query:   149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYT 208
             V+E A  Y F +D FQ ++I    RG SV+VSA TS+GKT++          N++R+ YT
Sbjct:   140 VNE-ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYT 198

Query:   209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
             +P+KALSNQK+RE    FGD  VGL+TGD  IN +A  L+MTTEILR+MLY+      SE
Sbjct:   199 SPIKALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRG-----SE 251

Query:   269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
               + +V  ++ DEVHY+ D  RG VWEE II  P +V+ + LSAT+ NA E A WI +IH
Sbjct:   252 V-MREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIH 310

Query:   329 GKT-ELITSSRRPVPLTWYF--STKTALLPLLDEK 360
              +   ++ ++ RP PL  Y   +    +  ++DEK
Sbjct:   311 SQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEK 345

 Score = 425 (154.7 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
 Identities = 116/361 (32%), Positives = 177/361 (49%)

Query:   273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
             +V  ++ DEVHY+ D  RG VWEE II  P +V+ + LSAT+ NA E A WI +IH +  
Sbjct:   255 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 314

Query:   332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
              ++ ++ RP PL  Y   +    +  ++DEK          N+ +   S      D    
Sbjct:   315 HIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREE----NFQKAMASISNQIGD---- 366

Query:   390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
                     D NS +     GQ      S     +  + +++  +W  +     P I F F
Sbjct:   367 --------DPNSTDSRGKKGQ-TYKGGSAKGDAKGDIYKIVKMIWKKKYN---PVIVFSF 414

Query:   450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
             ++R C+     +   +   + E   +         L P+  RE P IK +L    +G+  
Sbjct:   415 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 474

Query:   505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
             HH+G LPI K  IE LFQ G +KV+FATET + G+NMPA+T V +S+ K        ++ 
Sbjct:   475 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 534

Query:   565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG-VEPLVSQFTASYGMVLNL 623
              E  QM+GRAGRRG+D+RG +V++    +   +  K +  G  + L S F   Y M+LNL
Sbjct:   535 GEYIQMSGRAGRRGLDDRG-IVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNL 593

Query:   624 L 624
             +
Sbjct:   594 M 594

 Score = 68 (29.0 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
 Identities = 22/100 (22%), Positives = 42/100 (42%)

Query:   645 GRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSE 704
             G+SL E  +              M    ++  K+ K+ DVL +++S + +    R     
Sbjct:   791 GKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELY 850

Query:   705 AAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILK 744
               Y    +L E++K  KR  +E +  ++L      K +L+
Sbjct:   851 GKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLR 890

 Score = 65 (27.9 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
 Identities = 43/208 (20%), Positives = 79/208 (37%)

Query:   917 DAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTE--EKIKR---LKARSKRLTK 971
             D V+N K +     +L KKI           + ++++  E   K  R   L    K+L +
Sbjct:   809 DPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKR 868

Query:   972 RIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKIL 1031
             +I + +     + LR    +           +I   G  A  I   +EL L  ++ N   
Sbjct:   869 KISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNF 928

Query:  1032 LDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI-NVLDEHRSSFLELQEKH 1090
              +LKP Q AA+ +    +       +    + EP   +  +   +    + S +E+ EK 
Sbjct:   929 NELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKD 988

Query:  1091 GVEIPCCLDSQFSGMVEAWASGLTWREM 1118
              VE       +   +V  W  G T+ ++
Sbjct:   989 YVE---SFRHELMEVVYEWCRGATFTQI 1013

 Score = 51 (23.0 bits), Expect = 6.2e-36, Sum P(2) = 6.2e-36
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query:   910 HMSFEYHDAVENYKEQRTKVARLKK-----KIARTEGFKEYKKIVDTVKFTEEKIKRL 962
             H  F++ + + +      K+A LKK     ++   E  KEY +I   +K   E ++++
Sbjct:   607 HSFFQFQNVI-SVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQV 663


>POMBASE|SPAC17H9.02 [details] [associations]
            symbol:SPAC17H9.02 "TRAMP complex ATP-dependent RNA
            helicase (predicted)" species:4896 "Schizosaccharomyces pombe"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISO]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006364
            "rRNA processing" evidence=ISO] [GO:0016078 "tRNA catabolic
            process" evidence=ISO] [GO:0031499 "TRAMP complex" evidence=ISO]
            [GO:0043630 "ncRNA polyadenylation involved in
            polyadenylation-dependent ncRNA catabolic process" evidence=ISO]
            [GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
            the site of transcription" evidence=ISO] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
            PROSITE:PS51194 SMART:SM00490 PomBase:SPAC17H9.02 GO:GO:0005524
            EMBL:CU329670 GO:GO:0005730 GO:GO:0003676 GO:GO:0031499
            GO:GO:0043630 GO:GO:0016078 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG4581
            HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696 Pfam:PF13234
            OrthoDB:EOG4S1XG7 GO:GO:0071049 PIR:T37868 RefSeq:NP_593572.1
            ProteinModelPortal:O13799 STRING:O13799 EnsemblFungi:SPAC17H9.02.1
            GeneID:2542173 KEGG:spo:SPAC17H9.02 OMA:FARWISE NextBio:20803244
            Uniprot:O13799
        Length = 1030

 Score = 437 (158.9 bits), Expect = 2.0e-35, Sum P(3) = 2.0e-35
 Identities = 117/309 (37%), Positives = 167/309 (54%)

Query:   144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQR 203
             N+ I  D  A  Y F +D FQ ++I+   R  SV+VSA TS+GKT+I          N++
Sbjct:   110 NKHIPSDPPAKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGKTVIAEYAIAQALKNRQ 169

Query:   204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
             R+ YT+P+K+LSNQK+RE    FGD  VGL+TGD +IN  A  LIMTTEILR MLY++  
Sbjct:   170 RVIYTSPIKSLSNQKYRELLSEFGD--VGLMTGDVSINPSASCLIMTTEILRAMLYKN-- 225

Query:   264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
                SE  + ++  ++ DEVHY+ D  RG VWEE +I  P  ++ I LSAT+ NA + A W
Sbjct:   226 ---SEI-MHEIAWVIFDEVHYMRDKDRGVVWEETLILLPDAIRFIFLSATLPNALQFARW 281

Query:   324 IGQIHGKT-ELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHM--NRKLSLNYLQLSTS 378
             I +IH +   ++ +  RP PL  +   + A  +  L+DEK K    N K  L  L  ST 
Sbjct:   282 ISEIHKQPCHVVYTDYRPTPLQHFIYPQGADGIYMLVDEKNKFKTENFKKVLEVLDHSTR 341

Query:   379 EVKPYKDGGSRRRNSRKHADMN---SNN----IVTSFGQ-------HQLSKNSINAIRRS 424
             +    K     +++S     +N   SN     IV  F +       HQ  K  +N     
Sbjct:   342 QENYSKSSKKVKKSSSLERIINMVLSNRYDPIIVFCFSKKECEINAHQFGKLDLNDTENK 401

Query:   425 Q-VPQVIDT 432
             + V ++ D+
Sbjct:   402 ELVTEIFDS 410

 Score = 306 (112.8 bits), Expect = 6.6e-22, Sum P(2) = 6.6e-22
 Identities = 90/257 (35%), Positives = 146/257 (56%)

Query:   410 QHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLL 467
             Q   SK+S    + S + ++I+ +  L +R   P I F F+++ C+  A Q+ + D N  
Sbjct:   342 QENYSKSSKKVKKSSSLERIINMV--LSNR-YDPIIVFCFSKKECEINAHQFGKLDLNDT 398

Query:   468 DECEM-SEV-ELALKRFRILYPD-AVRE-PAIKGLL-KGVAAHHAGCLPIWKSFIEELFQ 522
             +  E+ +E+ + A+ +  +   D  +R+   ++ LL +G+  HH+G LPI K  +E LFQ
Sbjct:   399 ENKELVTEIFDSAINQ--LSEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKELVEILFQ 456

Query:   523 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 582
              GLV+++FATET + G+NMPART + +   K + +    LTS E  QM+GRAGRRGID +
Sbjct:   457 EGLVRILFATETFSIGLNMPARTVLFTKAQKFSGNNFRWLTSGEYMQMSGRAGRRGIDTK 516

Query:   583 GH--VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMK 640
             G   V+L Q+  E A  C  L+    + L S F  SYGM+LNL+   ++  +S E    K
Sbjct:   517 GLSIVILDQSIDEQAARC--LMNGQADVLNSAFHLSYGMILNLM---RIEEISPEDILKK 571

Query:   641 ALQAGRSLEEARKLVEQ 657
             +    +++E    + E+
Sbjct:   572 SFYQFQNMESLPLIKEE 588

 Score = 41 (19.5 bits), Expect = 2.0e-35, Sum P(3) = 2.0e-35
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query:   857 TMSLLLDKGEMLWEKLADSEF 877
             T+SL L K E+L  KL DS +
Sbjct:   776 TLSLSLRKLEILEPKLFDSPY 796

 Score = 39 (18.8 bits), Expect = 2.0e-35, Sum P(3) = 2.0e-35
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query:   681 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANL 713
             E   L +EI D AI++ S        ++EM +L
Sbjct:   399 ENKELVTEIFDSAINQLSEEDRGLRQFEEMRSL 431


>GENEDB_PFALCIPARUM|PFF0100w [details] [associations]
            symbol:PFF0100w "putative ATP dependent RNA
            helicase" species:5833 "Plasmodium falciparum" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
            InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
            PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 EMBL:AL844505 HOGENOM:HOG000163047 KO:K12598
            InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_966011.1
            ProteinModelPortal:C6KSM1 EnsemblProtists:PFF0100w:mRNA
            GeneID:3885738 KEGG:pfa:PFF0100w EuPathDB:PlasmoDB:PF3D7_0602100
            OMA:RGIVIIM ProtClustDB:CLSZ2433467 Uniprot:C6KSM1
        Length = 1350

 Score = 434 (157.8 bits), Expect = 5.9e-35, Sum P(2) = 5.9e-35
 Identities = 125/359 (34%), Positives = 174/359 (48%)

Query:   273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 332
             +V  ++ DE+HY+ D  RG +WEE II  P  V+ I LSAT+ N  + A W+  I     
Sbjct:   360 EVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIK---- 415

Query:   333 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
                S    +  T Y  T     PL     +H     S   + L   E K +K     + N
Sbjct:   416 ---SQACHIVYTDYRPT-----PL-----QHYIYPTSSESVFLICDENKDFK-----KDN 457

Query:   393 SRKHADMNSNNIVTSF-GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
               K  ++    + TS    HQ   N      R     +   +    SR+  P I F F++
Sbjct:   458 FIKAVNVIKEKMNTSEENHHQQHINKYTKKMRKTTYDIEKIVQMCHSRNYTPLIIFAFSK 517

Query:   452 RGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVAAHH 506
             + C+     +   +L  + E   + EL     RIL  D    P ++     LL+G+  HH
Sbjct:   518 KECEVNATAMHKIDLTSDTEKEVIKELYENAIRILADDDRSLPQVQFILPLLLRGIGIHH 577

Query:   507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
              G LPI K  IE +FQ  L+KV+F+TET + GINMPA+T V +SL+K     +  +TS E
Sbjct:   578 GGLLPIIKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVVFTSLTKFDGLEKRLITSGE 637

Query:   567 LFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
               QMAGRAGRRG+D+RG V+++  TP     E  KL       LVSQF   Y M+LNLL
Sbjct:   638 YIQMAGRAGRRGLDDRGIVIIMLDTPLHW-REAHKLFVGEANRLVSQFHLGYNMILNLL 695

 Score = 420 (152.9 bits), Expect = 9.5e-34, Sum P(2) = 9.5e-34
 Identities = 94/246 (38%), Positives = 144/246 (58%)

Query:   153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLK 212
             A  Y F +D FQ+ SIE   R  SV+VSA TS+GKT+I          +++R+ YT+P+K
Sbjct:   248 ARTYKFELDTFQKKSIECLERNESVLVSAHTSAGKTVIAEYAIALGLRDKQRVIYTSPIK 307

Query:   213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
             ALSNQK+R+  E F D  VGL+TGD +IN EA I++MTTEILR+MLY+   +        
Sbjct:   308 ALSNQKYRDLGEEFKD--VGLITGDISINPEASIIVMTTEILRSMLYRGSSLTK------ 359

Query:   273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
             +V  ++ DE+HY+ D  RG +WEE II  P  V+ I LSAT+ N  + A W+  I  +  
Sbjct:   360 EVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIKSQAC 419

Query:   332 ELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
              ++ +  RP PL  Y + T +  + L+ ++ K   +    N+++ + + +K  K   S  
Sbjct:   420 HIVYTDYRPTPLQHYIYPTSSESVFLICDENKDFKKD---NFIK-AVNVIKE-KMNTSEE 474

Query:   391 RNSRKH 396
              + ++H
Sbjct:   475 NHHQQH 480

 Score = 40 (19.1 bits), Expect = 9.5e-34, Sum P(2) = 9.5e-34
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query:   383 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNS 417
             +K     ++N  KH + N+NN     G H   K +
Sbjct:   899 HKKANDNQKN--KHNNSNNNNNNNHSGDHNNLKQA 931

 Score = 37 (18.1 bits), Expect = 5.9e-35, Sum P(2) = 5.9e-35
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query:   862 LDKGEMLWEKLADSEFGGLWCMEGSL 887
             L  G +L+    D  +G   C+EG L
Sbjct:   871 LSLGRLLYIIQEDLRWGWCICIEGQL 896


>POMBASE|SPAC6F12.16c [details] [associations]
            symbol:mtr4 "ATP-dependent RNA helicase, TRAMP complex
            subunit Mtr4" species:4896 "Schizosaccharomyces pombe" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005730 "nucleolus" evidence=ISO] [GO:0006364 "rRNA processing"
            evidence=ISO] [GO:0016078 "tRNA catabolic process" evidence=ISO]
            [GO:0031499 "TRAMP complex" evidence=IDA] [GO:0043630 "ncRNA
            polyadenylation involved in polyadenylation-dependent ncRNA
            catabolic process" evidence=ISO] [GO:0071049 "nuclear retention of
            pre-mRNA with aberrant 3'-ends at the site of transcription"
            evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
            PomBase:SPAC6F12.16c GO:GO:0005524 EMBL:CU329670 GO:GO:0005730
            GO:GO:0003676 GO:GO:0031499 GO:GO:0043630 GO:GO:0016078
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696
            Pfam:PF13234 EMBL:AB027847 PIR:T11667 RefSeq:NP_593302.1
            ProteinModelPortal:O14232 STRING:O14232 EnsemblFungi:SPAC6F12.16c.1
            GeneID:2541639 KEGG:spo:SPAC6F12.16c OMA:DDRISAD OrthoDB:EOG4S1XG7
            NextBio:20802732 GO:GO:0071049 Uniprot:O14232
        Length = 1117

 Score = 404 (147.3 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
 Identities = 92/211 (43%), Positives = 127/211 (60%)

Query:   153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLK 212
             A  Y F +D FQ  SI    R  SV+VSA TS+GKT++          +++R+ YT+P+K
Sbjct:   192 ARTYPFTLDPFQAVSIACIERQESVLVSAHTSAGKTVVAEYAVAQSLRDKQRVIYTSPIK 251

Query:   213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
             ALSNQK+RE    FGD  VGL+TGD  IN +A  L+MTTEILR+MLY+      SE  + 
Sbjct:   252 ALSNQKYRELLAEFGD--VGLMTGDVTINPDATCLVMTTEILRSMLYRG-----SEV-MR 303

Query:   273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
             +V  ++ DE+HY+ D  RG VWEE II  P +   + LSAT+ NA + A WI +IH +  
Sbjct:   304 EVAWVIFDEIHYMRDKERGVVWEETIILLPDKSHFVFLSATIPNAMQFAEWITKIHRQPC 363

Query:   332 ELITSSRRPVPLTWYF--STKTALLPLLDEK 360
              ++ +  RP PL  Y   S    +  ++DEK
Sbjct:   364 HVVYTDFRPTPLQHYLFPSGSDGIHLVVDEK 394

 Score = 404 (147.3 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
 Identities = 113/361 (31%), Positives = 178/361 (49%)

Query:   273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
             +V  ++ DE+HY+ D  RG VWEE II  P +   + LSAT+ NA + A WI +IH +  
Sbjct:   304 EVAWVIFDEIHYMRDKERGVVWEETIILLPDKSHFVFLSATIPNAMQFAEWITKIHRQPC 363

Query:   332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
              ++ +  RP PL  Y   S    +  ++DEK          N+ +  ++ ++  K G   
Sbjct:   364 HVVYTDFRPTPLQHYLFPSGSDGIHLVVDEKSNFREE----NFQRAMSALME--KQGDDP 417

Query:   390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR-SQVPQVIDTLWHLRSRDMLPAIWFI 448
                + K             G  +  K     ++  S + +++  +     ++  P I F 
Sbjct:   418 AAMATK-------------GNAKKGKTGKGGVKGPSDIYKIVKMIM---VKNYNPVIVFS 461

Query:   449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVA 503
             F++R C+A    +   ++ D+ E   V            +  RE P I+ +L    +G+ 
Sbjct:   462 FSKRECEALALQMSKLDMNDQTERDLVTTIFNNAVNQLSEKDRELPQIEHILPLLRRGIG 521

Query:   504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
              HH+G LPI K  IE LFQ GL+KV+FATET + G+NMPA+T V +++ K        ++
Sbjct:   522 IHHSGLLPILKEVIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTNVRKFDGKTFRWIS 581

Query:   564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
               E  QM+GRAGRRG+D+RG V+L+            +L    + L S F  SY M+LNL
Sbjct:   582 GGEYIQMSGRAGRRGLDDRGIVILMIDEKMDPPVAKSMLKGEADRLDSAFHLSYNMILNL 641

Query:   624 L 624
             L
Sbjct:   642 L 642

 Score = 65 (27.9 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
 Identities = 45/211 (21%), Positives = 80/211 (37%)

Query:   917 DAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQI 976
             D VEN   +     +L KK+   E  +     +      EEK      R   L + ++ +
Sbjct:   852 DPVENMNIKEPTFIKLMKKVNILES-RLLSNPLHNFSELEEKYAEY-LRKLALLEEVKDL 909

Query:   977 EP--SGWKEFLRISNVIHETRAL-----DINTQVIFPLGETAAAIRGENELWLAMVLRNK 1029
             +   S  +  +++  +    R L       +  VI   G  A  I   + L L  ++ N 
Sbjct:   910 KKKLSKARSIMQLDELNSRKRVLRRLGFTTSDDVIEVKGRVACEISSGDGLLLTELIFNG 969

Query:  1030 ILLDLKPAQLAAVCASLV-SEGIKVRLWKNNSSIYEPSTTVINVIN-VLDEHRSSFLELQ 1087
             +  DL P Q AA+ + LV  E  +V   +    +  P   +  +   +    + S  EL 
Sbjct:   970 MFNDLTPEQCAALLSCLVFQEKSEVENQRMKEELAGPLKILQEMARRIAKVSKESKQELN 1029

Query:  1088 EKHGVEIPCCLDSQFSGMVEAWASGLTWREM 1118
             E+  V            +V AWA G ++ ++
Sbjct:  1030 EEEYVN---SFKPSLMEVVYAWAHGASFAQI 1057

 Score = 64 (27.6 bits), Expect = 8.0e-35, Sum P(2) = 8.0e-35
 Identities = 22/103 (21%), Positives = 44/103 (42%)

Query:   642 LQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRL 701
             L  G++L E ++   +          M   +    K+ K+ ++L S +  + +   S   
Sbjct:   831 LTVGKALSEVKRRFPEGITLLDPVENMNIKEPTFIKLMKKVNILESRLLSNPLHNFSELE 890

Query:   702 LSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILK 744
                A Y     L EE+K  K+  ++ R  M+L   ++ K +L+
Sbjct:   891 EKYAEYLRKLALLEEVKDLKKKLSKARSIMQLDELNSRKRVLR 933


>UNIPROTKB|D4AE49 [details] [associations]
            symbol:D4AE49 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR012961 Pfam:PF00271 Pfam:PF08148 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
            GeneTree:ENSGT00690000102230 InterPro:IPR025696 Pfam:PF13234
            IPI:IPI00776783 PRIDE:D4AE49 Ensembl:ENSRNOT00000060695
            ArrayExpress:D4AE49 Uniprot:D4AE49
        Length = 764

 Score = 268 (99.4 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
 Identities = 64/159 (40%), Positives = 94/159 (59%)

Query:   436 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 493
             +  R+  P I F F+++ C+A A+Q  + D N  +E +M E E+       L  +  + P
Sbjct:   125 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFNNAIDCLSDEDKKLP 183

Query:   494 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
              ++ +L    +G+  HH G LPI K  IE LF  GL+K +FATET A GINMPART + +
Sbjct:   184 QVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 243

Query:   550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
             +  K        ++S E  QM+GRAGRRG+D+RG V+L+
Sbjct:   244 NARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILM 282

 Score = 129 (50.5 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
 Identities = 31/80 (38%), Positives = 42/80 (52%)

Query:   285 LSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPL 343
             + D  RG VWEE II  P  V  + LSAT+ NA + A WI  +H +   +I +  RP PL
Sbjct:     1 MRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPL 60

Query:   344 TWYF--STKTALLPLLDEKG 361
               Y   +    L  ++DE G
Sbjct:    61 QHYIFPAGGDGLHLVVDENG 80


>UNIPROTKB|F5H6Y7 [details] [associations]
            symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR012961
            InterPro:IPR016438 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0004386 EMBL:AL844853 EMBL:AL662849 EMBL:BX005143
            EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
            Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00946735
            SMR:F5H6Y7 Ensembl:ENST00000547025 Ensembl:ENST00000547224
            Ensembl:ENST00000547296 Ensembl:ENST00000548561
            Ensembl:ENST00000552010 Uniprot:F5H6Y7
        Length = 880

 Score = 336 (123.3 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
 Identities = 86/203 (42%), Positives = 113/203 (55%)

Query:   430 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDA 489
             +  L  LR+R  LP + F F+R  CD     L   +L    E SE+ L L+R       +
Sbjct:   189 LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGS 248

Query:   490 VRE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 544
              R+ P +     LL +G+  HH+G LPI K  +E LF RGLVKV+FATET A G+NMPAR
Sbjct:   249 DRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPAR 308

Query:   545 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKL 601
             T V  S+ K   S    L   E  QMAGRAGRRG+D  G V+L+   + P E A+   ++
Sbjct:   309 TVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRM 366

Query:   602 LFAGVEPLVSQFTASYGMVLNLL 624
             +      L SQF  +Y M+LNLL
Sbjct:   367 MMGKPSQLQSQFRLTYTMILNLL 389

 Score = 51 (23.0 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query:  1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
             G  A A+   +EL L  ++ +  L  L+P ++AA+ + LV +
Sbjct:   712 GRVACAM-SSHELLLTELMFDNALSTLRPEEIAALLSGLVCQ 752


>POMBASE|SPAC694.02 [details] [associations]
            symbol:SPAC694.02 "DEAD/DEAH box helicase" species:4896
            "Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC694.02
            GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG4581 PIR:T50247 RefSeq:NP_594482.1
            ProteinModelPortal:Q9P7T8 PRIDE:Q9P7T8 EnsemblFungi:SPAC694.02.1
            GeneID:2543333 KEGG:spo:SPAC694.02 HOGENOM:HOG000194492 OMA:HTRDYRI
            OrthoDB:EOG4S4SQ7 NextBio:20804349 Uniprot:Q9P7T8
        Length = 1717

 Score = 185 (70.2 bits), Expect = 3.4e-24, Sum P(4) = 3.4e-24
 Identities = 50/135 (37%), Positives = 69/135 (51%)

Query:   489 AVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
             AV E  +  L +G+  HH+G    ++  +E LF+ G + VV AT TL+ GINMP RT V 
Sbjct:  1212 AVPEWYVDALYRGIGIHHSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVF 1271

Query:   549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
                S       +QL +    Q AGRAGRRG D  GHV  +  P     +  +LL   +  
Sbjct:  1272 LGDS-------LQLNALNFHQAAGRAGRRGFDLLGHVGFLGVPLH---KIYRLLTTKLWD 1321

Query:   609 LVSQFTASYGMVLNL 623
             +  QF  +  +VL L
Sbjct:  1322 IQGQFPLTTSLVLQL 1336

 Score = 177 (67.4 bits), Expect = 3.4e-24, Sum P(4) = 3.4e-24
 Identities = 55/181 (30%), Positives = 83/181 (45%)

Query:   158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRR--IFYTTPLKALS 215
             F  D++QR +++   R  SV V APTSSGKT I          +     + Y  P KAL 
Sbjct:   734 FDPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVAPTKALV 793

Query:   216 NQKFREFRETFGDN--NVG-----LLTGDSAINR--EAQILIMTTEILRNMLYQSVGMVS 266
             NQ   E    F  +  + G     + T D  IN     Q+LI    +L++ML Q      
Sbjct:   794 NQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITVPHVLQSMLLQPA---L 850

Query:   267 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326
             + +    +  I+ DE+H +  +  G V E++++  P    I+ LSATV N  E   W+  
Sbjct:   851 ANAWCPKIRRIIFDEIHCIGQMEDGLVEEQLLLLAP--CPIVALSATVGNPQEFQVWLSA 908

Query:   327 I 327
             +
Sbjct:   909 L 909

 Score = 71 (30.1 bits), Expect = 3.4e-24, Sum P(4) = 3.4e-24
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query:   395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
             KH       +V S  +   S  S++AI ++ +P + D    L S+++LPAI F ++R+ C
Sbjct:  1048 KHFCSEPQKVVNSQLELHNSAYSLDAISQNLLPMLKD----LHSKELLPAICFNYDRQEC 1103

Query:   455 D 455
             +
Sbjct:  1104 E 1104

 Score = 45 (20.9 bits), Expect = 3.4e-24, Sum P(4) = 3.4e-24
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query:   724 RTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGV 764
             R  +   M+  +F A   IL +  N HL F+ ++Y   EG+
Sbjct:  1350 RDTIHALMDEPKFMANGSILSNQVNHHLRFV-IEYLRREGL 1389


>UNIPROTKB|G4MUH1 [details] [associations]
            symbol:MGG_07250 "DEAD/DEAH box helicase" species:242507
            "Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM001232
            GO:GO:0008026 RefSeq:XP_003715470.1 EnsemblFungi:MGG_07250T0
            GeneID:2682996 KEGG:mgr:MGG_07250 Uniprot:G4MUH1
        Length = 1771

 Score = 195 (73.7 bits), Expect = 3.7e-23, Sum P(4) = 3.7e-23
 Identities = 57/184 (30%), Positives = 83/184 (45%)

Query:   155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRR--IFYTTPLK 212
             +  F  D +QR  ++A     S+ V APTS+GKT I          +     + Y  P K
Sbjct:   710 VSSFNPDAWQRKVLDAIDAKKSLCVIAPTSAGKTFISFYAMKKVMQSSDNDVLVYVAPTK 769

Query:   213 ALSNQKFRE----FRETFG---DNNVGLL-TGDSAINREA--QILIMTTEILRNMLYQSV 262
             AL NQ   E    F++ F      +V  + T D  +N     QIL+    IL+ ML    
Sbjct:   770 ALVNQIAAEVQGRFKKKFRYEESRSVWAIHTRDYRVNNPTGCQILVTVPHILQIMLLSPP 829

Query:   263 GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAG 322
              +  + S    +  I+ DEVH +     G VWE++++  P    II LSATV N  E   
Sbjct:   830 NVEKANSWAHRIKRIIFDEVHCIGQAQEGVVWEQLLLLAP--CPIIALSATVGNPQEFVA 887

Query:   323 WIGQ 326
             W+ +
Sbjct:   888 WLSE 891

 Score = 179 (68.1 bits), Expect = 3.7e-23, Sum P(4) = 3.7e-23
 Identities = 57/176 (32%), Positives = 88/176 (50%)

Query:   469 ECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKV 528
             +C+  ++E  ++    +  D V    I+ L +GV  HHAG    ++  +E L +RG + V
Sbjct:  1187 KCQREDLEELIRSLNWVNLDPV---FIEALRRGVGVHHAGMNRKYRQVVEMLCRRGFLTV 1243

Query:   529 VFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
             V AT TLA GIN+P +T V S  S       + L++    Q +GRAGRRG D  G+VV  
Sbjct:  1244 VIATGTLALGINVPCKTVVFSEDS-------VFLSALNYRQASGRAGRRGFDLLGNVVF- 1295

Query:   589 QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQA 644
               P   + E   ++ + +  L  QF  S  +VL  L+     H  N    ++A Q+
Sbjct:  1296 NIPTHRSFE---IMSSRLPDLRGQFPVSTTIVLRTLSLCS--HTQNNEFSIQAAQS 1346

 Score = 51 (23.0 bits), Expect = 3.7e-23, Sum P(4) = 3.7e-23
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query:   427 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVE 476
             P+    L  L  R  LPAI F ++R  C++ ++     +++ E +  E+E
Sbjct:  1064 PEHFQLLLDLHQRQGLPAIIFNYDRMKCESIMK-----SVISELKRHELE 1108

 Score = 43 (20.2 bits), Expect = 3.7e-23, Sum P(4) = 3.7e-23
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query:   119 PAPSWREEFK 128
             PAP W+EE +
Sbjct:   517 PAPGWKEELR 526


>WB|WBGene00016194 [details] [associations]
            symbol:C28H8.3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000287 "magnesium ion
            binding" evidence=IEA] [GO:0004427 "inorganic diphosphatase
            activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0006796 "phosphate-containing compound metabolic process"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 KO:K01529 GO:GO:0008026 EMBL:FO080703
            eggNOG:COG4581 GeneTree:ENSGT00690000102154 PIR:A88470
            RefSeq:NP_498283.1 ProteinModelPortal:Q09475 SMR:Q09475
            STRING:Q09475 PaxDb:Q09475 EnsemblMetazoa:C28H8.3.1
            EnsemblMetazoa:C28H8.3.2 GeneID:175834 KEGG:cel:CELE_C28H8.3
            UCSC:C28H8.3.1 CTD:175834 WormBase:C28H8.3 HOGENOM:HOG000018763
            InParanoid:Q09475 OMA:YARFRNK NextBio:889866 Uniprot:Q09475
        Length = 1714

 Score = 195 (73.7 bits), Expect = 2.6e-21, Sum P(5) = 2.6e-21
 Identities = 65/240 (27%), Positives = 111/240 (46%)

Query:   141 EFGNEMIDVDELASIYD----FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXX 196
             ++G E+ID+       D    F  D +QR  +++  RG+S ++ APTS+GKT +      
Sbjct:   762 QYGGELIDIQSDPKKDDRVSGFAPDGWQRKMLDSVDRGNSALIIAPTSAGKTFVSYYCIE 821

Query:   197 XXXXNQRR--IFYTTPLKALSNQ-------KFREFRETFGDNNVGLLTGDSAINR-EAQI 246
                 +     + Y  P KAL NQ       +FR      G +  G LT + + N  + Q+
Sbjct:   822 KVLRSSDNDVVVYVAPSKALINQVCGSVYARFRNKSMKRGISLFGTLTQEYSQNAMQCQV 881

Query:   247 LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII--IYCPKE 304
             LI   E L+ ++      V  +  +  +  +V DEVH +       +WE+++  I CP  
Sbjct:   882 LITVPECLQELMLSRTPAV--QKFVSHIKYVVFDEVHSIGASEESHIWEQLLLLIQCP-- 937

Query:   305 VQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTAL-LPLLDEKGKH 363
                + LSAT+ NA++L  W+   +   +  ++ +R V L  Y    + L L +L+    H
Sbjct:   938 --FLALSATIGNANKLHEWL---NSSEQAKSAGKRKVELINYGERYSELELSILNINDPH 992

 Score = 184 (69.8 bits), Expect = 2.6e-21, Sum P(5) = 2.6e-21
 Identities = 52/162 (32%), Positives = 81/162 (50%)

Query:   500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
             +G+  HHAG   + +  +E LF+ G + V+F+T TL+ G+NMP +T +            
Sbjct:  1280 RGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTLSLGVNMPCKTVMFGV-------DT 1332

Query:   560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ--FTASY 617
             +QLT     QM+GRAGRRG D+ G+V+ +  P     +  +LL A +  L     FT  +
Sbjct:  1333 LQLTPLLYRQMSGRAGRRGFDHSGNVIFMSIP---TSKVRRLLTASLSNLQGNPPFTVLF 1389

Query:   618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 659
               +L L A      + NE     +    R+   A+ L+E SF
Sbjct:  1390 --LLRLFAYVHQQDILNEEGQKVSTMKQRAFA-AKSLLEHSF 1428

 Score = 68 (29.0 bits), Expect = 2.0e-10, Sum P(5) = 2.0e-10
 Identities = 48/190 (25%), Positives = 80/190 (42%)

Query:   624 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 683
             L   +V+HL N   ++    A +   E  K     FG + G+  +  ++ EL +++    
Sbjct:  1033 LTARQVLHLYNMMAEVD--DATKKEFEPCKF----FGQH-GTKAVWISRSELRRLENALK 1085

Query:   684 VLTSE-ISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDI 742
                 E +S D  ++K   +L     KE  N Q   +A + F  E   ++       L D 
Sbjct:  1086 ERFMEWLSSD--EQKINSILK--ILKEPVNTQLSYRA-RPFNKE---KIANDYIVTLVDD 1137

Query:   743 LKDFENGHLPFLCLQYKDSEGVEHSVPAVYLG------KFDSLDSSKLKNMASINDSFAL 796
             LK  E G LP +C  + D   V   + AV L       + + +++ + KN   I D   L
Sbjct:  1138 LK--EKGELPAIC--FNDDRHVCEKL-AVTLANELERRELEYMETDEFKNKYMIKDESKL 1192

Query:   797 NRLAQSNGDD 806
              +LA+   DD
Sbjct:  1193 VKLAKRKRDD 1202

 Score = 46 (21.3 bits), Expect = 2.0e-10, Sum P(5) = 2.0e-10
 Identities = 20/88 (22%), Positives = 42/88 (47%)

Query:   913 FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKI--KRLK---ARSK 967
             F Y    +   E+  KV+ +K++    +   E+   + T +  ++ I  K+L+   A S 
Sbjct:  1394 FAYVHQQDILNEEGQKVSTMKQRAFAAKSLLEHSFSIHTRREAQDGILQKQLRMFSAFSF 1453

Query:   968 RLTKRIEQIEPSG-WKEFLRISNVIHET 994
             +L + ++ + P G  K F  ++  IH +
Sbjct:  1454 QLLRHLQLLSPFGEGKNFAEMA--IHSS 1479

 Score = 40 (19.1 bits), Expect = 2.6e-21, Sum P(5) = 2.6e-21
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query:   436 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVE 476
             L+ +  LPAI F  +R  C+     L   N L+  E+  +E
Sbjct:  1138 LKEKGELPAICFNDDRHVCEKLAVTL--ANELERRELEYME 1176

 Score = 38 (18.4 bits), Expect = 2.6e-21, Sum P(5) = 2.6e-21
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query:   133 EKLCNEVKEFGNEMIDVDELASIYDFRIDKF 163
             EKL + + E  + ++D+  L S+    I +F
Sbjct:   451 EKLFDPIPEITDPLVDLPILYSVTSPMIKRF 481

 Score = 38 (18.4 bits), Expect = 2.7e-06, Sum P(4) = 2.7e-06
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query:   352 ALLPLLDEKGKHMNRKLSLNYL 373
             A + LLD K  H N KL L+ L
Sbjct:   384 AAVVLLD-KADHANSKLDLSDL 404

 Score = 37 (18.1 bits), Expect = 2.6e-21, Sum P(5) = 2.6e-21
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query:    31 SHTLGFCIPK-PLLSSNSIQFQASYKSPKSFF 61
             +  L F + +  ++  N  QF  SYK+  S F
Sbjct:    77 TEVLNFSLEQLSMMKKNLAQFPCSYKNIISEF 108


>DICTYBASE|DDB_G0278827 [details] [associations]
            symbol:DDB_G0278827 "Probable ATP-dependent RNA
            helicase DDX60" species:44689 "Dictyostelium discoideum"
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0278827 GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
            EMBL:AAFI02000024 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG4581 RefSeq:XP_641993.1
            ProteinModelPortal:Q54XN7 EnsemblProtists:DDB0206223 GeneID:8621725
            KEGG:ddi:DDB_G0278827 InParanoid:Q54XN7 OMA:RESALIC Uniprot:Q54XN7
        Length = 1816

 Score = 196 (74.1 bits), Expect = 7.0e-21, Sum P(5) = 7.0e-21
 Identities = 55/169 (32%), Positives = 89/169 (52%)

Query:   491 REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
             ++P    L +G+AAHH GC   +   +E LF+   ++VVFAT TLA G+N PA+++V   
Sbjct:  1258 KDPLAPALTQGIAAHHGGCDKNYLRNVEYLFRSKKIQVVFATSTLAVGVNAPAKSSVFLG 1317

Query:   551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 610
              S         LTS    Q AGRAGRRG DN G+V+ V  P    ++  +LL + +  ++
Sbjct:  1318 DSPYLNV----LTSK---QCAGRAGRRGFDNYGNVIFVGLP---KQKINRLLNSRLSNII 1367

Query:   611 SQFTASYGMVLNLLA--GAKVMHLSNESDDMKALQAGRSLEEARKLVEQ 657
                  S  + L+L++         +N+S++   +Q   + +E  K  E+
Sbjct:  1368 GNSVVSPSLCLSLVSRYDYSTNGSANKSNEENKVQVKENEKEREKEKEK 1416

 Score = 148 (57.2 bits), Expect = 7.0e-21, Sum P(5) = 7.0e-21
 Identities = 61/227 (26%), Positives = 99/227 (43%)

Query:   151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXX--XXXXXXXNQRRIFYT 208
             E + +  F+ D +Q   ++   +  S ++ A TSSGKT I            N   + + 
Sbjct:   809 EDSRVRHFKPDAWQVELLDIVDKRESALICASTSSGKTFISFYCFEQILKESNDGIVVFV 868

Query:   209 TPLKALSNQKFREFRETFGDN----N--------VGLLTGDSAINREA-QILIMTTEILR 255
              P KAL NQ + E    +  N    N        VG+ T D  +N E  QILI   + L 
Sbjct:   869 CPTKALVNQMYAEVLGRYDKNYQAINHRPSNHKMVGVFTRDFRLNIETCQILITVPQCLE 928

Query:   256 NMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVA 315
              +L+ S+    +   +     I+ DEVH ++    G +WE ++++ P     + LSAT+ 
Sbjct:   929 -ILFLSI---MNTHFIQRCRYIIFDEVHQIASSVDGAIWERLLVFNP--APFLALSATLG 982

Query:   316 NADELAGWIGQI--HGKTELITSSRRPVPLTWYFSTKTALLPLLDEK 360
             N  +   ++ +I  + K  LI    R   L  +F  +T   P  D K
Sbjct:   983 NLTDFHNFLKKIDPNRKVSLIHYQSRFNDLKNFFLCQT---PAKDNK 1026

 Score = 66 (28.3 bits), Expect = 7.0e-21, Sum P(5) = 7.0e-21
 Identities = 17/64 (26%), Positives = 36/64 (56%)

Query:   428 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL-EDC-------NLLDECEMSEVELAL 479
             ++ + +  L+ +D+LPA++F FNR  C    Q +  D        N+++E    +++L +
Sbjct:  1146 EITNIVLELQKQDLLPALFFSFNRSLCSRLAQRVYNDITHRNTNPNIIEE--KKQLDLVI 1203

Query:   480 KRFR 483
             +RF+
Sbjct:  1204 ERFQ 1207

 Score = 43 (20.2 bits), Expect = 7.0e-21, Sum P(5) = 7.0e-21
 Identities = 11/44 (25%), Positives = 17/44 (38%)

Query:  1033 DLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
             DLK +Q      +  +       W  N    +PST   N  ++L
Sbjct:  1661 DLKDSQKTTTTTTTATTSTITNKWNENFEKLKPSTENFNTGDLL 1704

 Score = 42 (19.8 bits), Expect = 2.2e-10, Sum P(5) = 2.2e-10
 Identities = 11/53 (20%), Positives = 24/53 (45%)

Query:   216 NQKFREFRE---TFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
             N +F  F     +F D N  L     + NR+ +I ++ + +  N +  ++  +
Sbjct:   236 NNEFENFNSDKLSFKDQNQILFNQQQSENRDNEINLLISTMFNNDISNNLNRI 288

 Score = 38 (18.4 bits), Expect = 7.0e-21, Sum P(5) = 7.0e-21
 Identities = 13/53 (24%), Positives = 27/53 (50%)

Query:     5 SILSGSTTFPVFANTKPFSFHQFHTLSHTLGFCIP-------KPLLSSNSIQF 50
             ++L+  T F +F   +   F++ +TL      CI        K +L+++++QF
Sbjct:    80 NVLNRKTKFQIFFIDENQYFYKNNTLKLIRKICIDYYINNDKKNVLNNSNVQF 132

 Score = 37 (18.1 bits), Expect = 2.8e-20, Sum P(5) = 2.8e-20
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query:   774 GKFDSLDSSKLKNMASINDSFALNRLAQSNGD 805
             G F   +  KLKN+   N  F+   L   N D
Sbjct:  1706 GIFKVSNLKKLKNILGSNTYFSTRILPYCNVD 1737


>WB|WBGene00021905 [details] [associations]
            symbol:helq-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0000712 "resolution of meiotic
            recombination intermediates" evidence=IGI] [GO:0051117 "ATPase
            binding" evidence=IPI] [GO:0017116 "single-stranded DNA-dependent
            ATP-dependent DNA helicase activity" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GeneTree:ENSGT00640000091272 GO:GO:0000712 GO:GO:0017116
            OMA:SRPLENC EMBL:FO080183 RefSeq:NP_001022911.1
            ProteinModelPortal:H2KY86 SMR:H2KY86 EnsemblMetazoa:Y55B1AL.3a
            GeneID:175210 KEGG:cel:CELE_Y55B1AL.3 CTD:175210
            WormBase:Y55B1AL.3a Uniprot:H2KY86
        Length = 923

 Score = 200 (75.5 bits), Expect = 9.3e-21, Sum P(2) = 9.3e-21
 Identities = 65/224 (29%), Positives = 108/224 (48%)

Query:   444 AIWFIFNRRGCD-AAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVREPAIKG-LLK 500
             A+ F  N++ C+  AV   +     + + + +E +  L+ +     D   +  +K  +L 
Sbjct:   406 AVIFCPNKKNCENVAVLIAKTLPAHIRQAKRAESDAFLQSYLSDNDDERMDAVLKQCILS 465

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
             GVA HH+G     +  +E  F  GL+ VV AT TLAAG+N+P R  ++    K    GR 
Sbjct:   466 GVAYHHSGLTQDERKCVEAAFMEGLIYVVCATSTLAAGVNLPVRRVII----KAPMVGRE 521

Query:   561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
             +L   +  QMAGRAGR G D +G  + +    E      ++L + +   +S  ++   M 
Sbjct:   522 RLGKAQYLQMAGRAGRAGFDTKGDCITIIKAGEEERWFREMLKSDIPRCMSSLSSEESMG 581

Query:   621 LNLLAGAKVMHLSNESDD-MKALQ-----AGRSLEEARKLVEQS 658
              + +    V+ L+   ++ M A++     A  S E  RKLVE S
Sbjct:   582 -SFILDCVVLKLAENIEEIMTAVRYSLFYAQESPENIRKLVESS 624

 Score = 138 (53.6 bits), Expect = 9.3e-21, Sum P(2) = 9.3e-21
 Identities = 63/237 (26%), Positives = 106/237 (44%)

Query:   119 PAPSWREEFKWQRVEKLCNEVKEFGNEMI-DVDELASIYDFRIDKFQRSSIEAFLRGSSV 177
             PAP  R E       K C  + E   EM   + +L   YD++ +     S +  L G + 
Sbjct:   134 PAPEKRPETLTLDPSK-C--LPERDMEMYRKIKKLDKFYDWQQECL---SDKRLLDGENC 187

Query:   178 VVSAPTSSGKTLIXXXXXXXXXX-NQRRIFYTTPLKALSNQKFRE---FRETFGDNNVGL 233
             ++S PT +GKTLI            +R      P  A+  +K      F + FG N    
Sbjct:   188 ILSLPTGAGKTLIAEVLMLREAIVRKRNAILVLPYVAIVQEKISALAPFEDAFGINIEEY 247

Query:   234 LTGDSA---INREAQILIMTTEILR-NMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDIS 289
              +       I R  ++ +    I + NML  S+    ++  L  V ++V+DE+H + D  
Sbjct:   248 ASNKGRFPPIKRRKRVSVYVATIEKANMLINSL---ITQGQLDRVGMVVVDELHMIGDGG 304

Query:   290 RGTVWEEIII-YCPKEV-QIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLT 344
             RG + E+++  +  K   QI+ +SAT+ N D+L   +     +  + +++ RPV LT
Sbjct:   305 RGAILEQLLAKFLYKGTGQIVGMSATLPNIDDLKFAL-----RAFVYSTNFRPVELT 356

 Score = 37 (18.1 bits), Expect = 0.0010, Sum P(2) = 0.0010
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query:  1008 GETAAAIR-GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSI 1062
             G+    I+ GE E W   +L++ I   +          S + + + ++L +N   I
Sbjct:   544 GDCITIIKAGEEERWFREMLKSDIPRCMSSLSSEESMGSFILDCVVLKLAENIEEI 599


>UNIPROTKB|J9P0M0 [details] [associations]
            symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GeneTree:ENSGT00690000102154 EMBL:AAEX03010133 EMBL:AAEX03010134
            EMBL:AAEX03010135 Ensembl:ENSCAFT00000044956 Uniprot:J9P0M0
        Length = 1708

 Score = 194 (73.4 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 93/330 (28%), Positives = 145/330 (43%)

Query:   319 ELAGWIGQIHGKTELITSSRRPVPLTWYFSTKT-ALLPLLDEKGKHMNRKLSLNYLQLST 377
             EL  W+   H + E  T  +   P + + S  T ++ PLL EK + M +  +L +L  + 
Sbjct:  1075 ELTSWVKNGHAE-EAKTVLKNLCPDSVFSSENTVSMFPLLVEKLRKMEKLPALFFL-FNL 1132

Query:   378 SEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS-QVPQVID--TLW 434
              +V+  +    R    RK A             H L  N I  IR+S +  + ID  +L 
Sbjct:  1133 EDVER-RAASLRYFLLRKQAMQRPPKADKE--AHDLI-NKIRKIRKSIERQKTIDERSLK 1188

Query:   435 HLRSRDMLPAIWFIFNR--RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 492
             + R  D         N   +  +  ++  E+C   ++  +    L +   R+ +     E
Sbjct:  1189 NPRKMDQKLIYEAEHNNLLKILEKNLEIPEECTYANQKAIDAETLQMVFDRVKFTRKGAE 1248

Query:   493 PAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
               +K L + G+  HH+      K  +E LF++G ++VV AT TLA GINMP ++ V    
Sbjct:  1249 --LKALARRGIGYHHSSLSFKDKQLVEVLFRKGFIRVVTATGTLALGINMPCKSVVF--- 1303

Query:   552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
                 A   I L +    QM+GRAGRRG D  G V     P    E   KL+ + V  L  
Sbjct:  1304 ----AQNSIYLDALNYRQMSGRAGRRGQDLMGDVYFFGIPLPKIE---KLIKSNVPELRG 1356

Query:   612 QFTASYGMVLNLLAGAKVMHLSNESDDMKA 641
             QF     +VL L+  A     +++ +D KA
Sbjct:  1357 QFPLGITLVLRLMLLASK---ADDPEDAKA 1383

 Score = 146 (56.5 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 50/186 (26%), Positives = 78/186 (41%)

Query:   155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXX--XXXXXXXNQRRIFYTTPLK 212
             + +F  D +QR  ++      S V+ APTSSGKT              N+  + Y  P K
Sbjct:   755 VQNFIPDTWQRELLDVVDNNESAVIVAPTSSGKTYASYYCMEKVLKESNEGVVVYVAPTK 814

Query:   213 ALSNQKFREFRETF------GDNNVGLLTGD---SAINREAQILIMTTEILRNMLYQSVG 263
             AL NQ        F      G+   G+ T D    A+N   Q+LI        +L     
Sbjct:   815 ALVNQVAATVHNRFTKSLPNGEALCGVFTRDYRHDALN--CQVLITVPACFEILLLSP-- 870

Query:   264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY--CPKEVQIICLSATVANADELA 321
                 ++ +  +  ++ DEVH L       VWE +++   CP     + LSAT++N + L 
Sbjct:   871 --HRQAWVKRIRYVIFDEVHCLGGEIGAEVWEHLLVMIRCP----FLALSATISNPEHLT 924

Query:   322 GWIGQI 327
              W+  +
Sbjct:   925 EWLQSV 930


>UNIPROTKB|E2QSY2 [details] [associations]
            symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:1900246 "positive regulation of RIG-I
            signaling pathway" evidence=IEA] [GO:1900245 "positive regulation
            of MDA-5 signaling pathway" evidence=IEA] [GO:0051607 "defense
            response to virus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0003727 "single-stranded RNA binding"
            evidence=IEA] [GO:0003725 "double-stranded RNA binding"
            evidence=IEA] [GO:0003690 "double-stranded DNA binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003727
            GO:GO:0051607 GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 OMA:QDCTYAD
            GO:GO:1900245 GO:GO:1900246 GeneTree:ENSGT00690000102154
            EMBL:AAEX03010133 EMBL:AAEX03010134 EMBL:AAEX03010135
            Ensembl:ENSCAFT00000014321 Uniprot:E2QSY2
        Length = 1711

 Score = 194 (73.4 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 93/330 (28%), Positives = 145/330 (43%)

Query:   319 ELAGWIGQIHGKTELITSSRRPVPLTWYFSTKT-ALLPLLDEKGKHMNRKLSLNYLQLST 377
             EL  W+   H + E  T  +   P + + S  T ++ PLL EK + M +  +L +L  + 
Sbjct:  1078 ELTSWVKNGHAE-EAKTVLKNLCPDSVFSSENTVSMFPLLVEKLRKMEKLPALFFL-FNL 1135

Query:   378 SEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS-QVPQVID--TLW 434
              +V+  +    R    RK A             H L  N I  IR+S +  + ID  +L 
Sbjct:  1136 EDVER-RAASLRYFLLRKQAMQRPPKADKE--AHDLI-NKIRKIRKSIERQKTIDERSLK 1191

Query:   435 HLRSRDMLPAIWFIFNR--RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 492
             + R  D         N   +  +  ++  E+C   ++  +    L +   R+ +     E
Sbjct:  1192 NPRKMDQKLIYEAEHNNLLKILEKNLEIPEECTYANQKAIDAETLQMVFDRVKFTRKGAE 1251

Query:   493 PAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
               +K L + G+  HH+      K  +E LF++G ++VV AT TLA GINMP ++ V    
Sbjct:  1252 --LKALARRGIGYHHSSLSFKDKQLVEVLFRKGFIRVVTATGTLALGINMPCKSVVF--- 1306

Query:   552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
                 A   I L +    QM+GRAGRRG D  G V     P    E   KL+ + V  L  
Sbjct:  1307 ----AQNSIYLDALNYRQMSGRAGRRGQDLMGDVYFFGIPLPKIE---KLIKSNVPELRG 1359

Query:   612 QFTASYGMVLNLLAGAKVMHLSNESDDMKA 641
             QF     +VL L+  A     +++ +D KA
Sbjct:  1360 QFPLGITLVLRLMLLASK---ADDPEDAKA 1386

 Score = 146 (56.5 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 50/186 (26%), Positives = 78/186 (41%)

Query:   155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXX--XXXXXXXNQRRIFYTTPLK 212
             + +F  D +QR  ++      S V+ APTSSGKT              N+  + Y  P K
Sbjct:   758 VQNFIPDTWQRELLDVVDNNESAVIVAPTSSGKTYASYYCMEKVLKESNEGVVVYVAPTK 817

Query:   213 ALSNQKFREFRETF------GDNNVGLLTGD---SAINREAQILIMTTEILRNMLYQSVG 263
             AL NQ        F      G+   G+ T D    A+N   Q+LI        +L     
Sbjct:   818 ALVNQVAATVHNRFTKSLPNGEALCGVFTRDYRHDALN--CQVLITVPACFEILLLSP-- 873

Query:   264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY--CPKEVQIICLSATVANADELA 321
                 ++ +  +  ++ DEVH L       VWE +++   CP     + LSAT++N + L 
Sbjct:   874 --HRQAWVKRIRYVIFDEVHCLGGEIGAEVWEHLLVMIRCP----FLALSATISNPEHLT 927

Query:   322 GWIGQI 327
              W+  +
Sbjct:   928 EWLQSV 933


>RGD|1560014 [details] [associations]
            symbol:Ddx60 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 60"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
            evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003725
            "double-stranded RNA binding" evidence=ISO] [GO:0003727
            "single-stranded RNA binding" evidence=ISO] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0009615 "response to virus" evidence=ISO] [GO:0051607 "defense
            response to virus" evidence=ISO] [GO:1900245 "positive regulation
            of MDA-5 signaling pathway" evidence=ISO] [GO:1900246 "positive
            regulation of RIG-I signaling pathway" evidence=ISO]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 RGD:1560014 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 GeneTree:ENSGT00690000102154 IPI:IPI00358301
            Ensembl:ENSRNOT00000019667 Uniprot:F1M4N8
        Length = 1304

 Score = 184 (69.8 bits), Expect = 1.7e-19, Sum P(3) = 1.7e-19
 Identities = 57/180 (31%), Positives = 88/180 (48%)

Query:   462 EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEEL 520
             +DC   D+  + E  L +   R+ Y    +   +K L + G+  HH+      K  +E L
Sbjct:   814 KDCTYADQKAIDEEALQMVFKRVKYER--KGDTLKKLARRGIGYHHSSMTNKEKQLVEIL 871

Query:   521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
             F++G ++VV AT TL+ GINMP ++ V        A   + L +    QM+GRAGRRG D
Sbjct:   872 FRKGFIRVVTATRTLSLGINMPCKSVVF-------AQNSVYLDALNYRQMSGRAGRRGQD 924

Query:   581 NRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMK 640
               G V     P     +  KL+ + V  L  QF  S  ++L L      M L+ ++DD++
Sbjct:   925 LLGDVYFFDIPLP---KIGKLIKSKVPDLRGQFPLSITLILRL------MLLATKADDLE 975

 Score = 148 (57.2 bits), Expect = 1.7e-19, Sum P(3) = 1.7e-19
 Identities = 49/186 (26%), Positives = 80/186 (43%)

Query:   155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXX--XXXXXXXNQRRIFYTTPLK 212
             + DF  D +QR  ++      S V+ APTSSGKT              N+  + Y  P K
Sbjct:   351 VQDFIPDTWQRELLDVVDNYESAVIVAPTSSGKTYASYYCMEKVLKESNEGVVVYVAPTK 410

Query:   213 ALSNQKFREFRETF------GDNNVGLLTGD---SAINREAQILIMTTEILRNMLYQSVG 263
             AL NQ     +  +      G+   G+ T D    A+N  +Q+LI        +L     
Sbjct:   411 ALVNQVAATVQNRYTKNMPAGEVLCGVFTSDYHHEALN--SQVLITMPACFEILLLAP-- 466

Query:   264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY--CPKEVQIICLSATVANADELA 321
                 ++ +  +  ++ DEVH +    R  +WE +++   CP     + LSAT++N   L 
Sbjct:   467 --HRQNWVKRIRYVIFDEVHCIGGEIRAEIWEHLLVMIRCP----FLALSATISNPQHLT 520

Query:   322 GWIGQI 327
              W+  +
Sbjct:   521 EWLQSV 526

 Score = 48 (22.0 bits), Expect = 1.7e-19, Sum P(3) = 1.7e-19
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query:   436 LRSRDMLPAIWFIFNRRGCDAAVQYLED-CNLLDE 469
             LR  + LPA++F+F+    D   +  E  C  L+E
Sbjct:   713 LRKMEKLPAVFFLFS---LDTVEECAESVCEFLEE 744

 Score = 43 (20.2 bits), Expect = 8.4e-09, Sum P(3) = 8.4e-09
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query:   132 VEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIE--AFLRGSSVVVSA 181
             +EK  + +KE   EM+       I    +D+F R  ++   FL+    +V++
Sbjct:    32 IEKTLSPIKESSQEMMPNLGFIPISCNLVDEFTRDILKDLPFLKSDDPIVTS 83

 Score = 43 (20.2 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
 Identities = 12/47 (25%), Positives = 24/47 (51%)

Query:   923 KEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 969
             K ++ K +  K+KI   +G K  +++  ++ +  E    LK+  K L
Sbjct:   764 KLRKVKKSLEKQKIRDEKGQKSSRRLDQSIMYEAEHDYLLKSLEKNL 810

 Score = 38 (18.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 17/64 (26%), Positives = 33/64 (51%)

Query:   914 EYHDAVENYKEQRTKVARLKK--KIA--RTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 969
             E  ++V  + E++ +  R  K  K+A   T   ++ KK ++  K  +EK ++    S+RL
Sbjct:   733 ECAESVCEFLEEKQEEKRPPKADKVAYTMTNKLRKVKKSLEKQKIRDEKGQK---SSRRL 789

Query:   970 TKRI 973
              + I
Sbjct:   790 DQSI 793


>SGD|S000003503 [details] [associations]
            symbol:SLH1 "Putative RNA helicase related to Ski2p"
            species:4932 "Saccharomyces cerevisiae" [GO:0051607 "defense
            response to virus" evidence=IEA] [GO:0006417 "regulation of
            translation" evidence=IEA;IGI;IMP] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0042788 "polysomal ribosome"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0002181
            "cytoplasmic translation" evidence=IGI] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
            SMART:SM00490 SGD:S000003503 GO:GO:0005524 GO:GO:0005737
            GO:GO:0006417 EMBL:BK006941 GO:GO:0003676 GO:GO:0051607
            GO:GO:0002181 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
            SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
            GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003724 KO:K02201
            RefSeq:NP_011793.3 GeneID:853194 KEGG:sce:YGR277C OMA:RKPTGEG
            OrthoDB:EOG4H75KM RefSeq:NP_011787.4 GeneID:853187 KEGG:sce:YGR271W
            EMBL:U35242 EMBL:Z73056 PIR:S64604 DIP:DIP-5563N IntAct:P53327
            MINT:MINT-516762 STRING:P53327 PaxDb:P53327 PeptideAtlas:P53327
            EnsemblFungi:YGR271W CYGD:YGR271w NextBio:973332
            Genevestigator:P53327 GermOnline:YGR271W Uniprot:P53327
        Length = 1967

 Score = 189 (71.6 bits), Expect = 4.3e-19, Sum P(3) = 4.3e-19
 Identities = 82/270 (30%), Positives = 126/270 (46%)

Query:   152 LASIYDFR-IDKFQRSSIEAFLR-GSSVVVSAPTSSGKTLIXXXXXXXXXXN--QRRIFY 207
             + SIY F+  +  Q  +         +  V +PT SGKT++              ++I Y
Sbjct:  1131 IESIYPFKYFNPMQTMTFYTLYNTNENAFVGSPTGSGKTIVAELAIWHAFKTFPGKKIVY 1190

Query:   208 TTPLKALSNQKFREFRETF----GDNNVGLLTGDSAIN----REAQILIMTTE----ILR 255
               P+KAL  ++  ++R+      GD  V L TGDS  +     +A I+I T E    I R
Sbjct:  1191 IAPMKALVRERVDDWRKKITPVTGDKVVEL-TGDSLPDPKDVHDATIVITTPEKFDGISR 1249

Query:   256 NMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIII---YCPKE----VQII 308
             N  +Q+   V       DV +I++DE+H L+   RG + E I+    Y   +    V+++
Sbjct:  1250 N--WQTRKFVQ------DVSLIIMDEIHLLAS-DRGPILEMIVSRMNYISSQTKQPVRLL 1300

Query:   309 CLSATVANADELAGWIG-QIHGKTELITSSRRPVPLTWY---FSTKTALLPLLDEKGKHM 364
              +S  V+NA ++AGW+G + HG      SS RPVPL  Y   F    A  PL+    K M
Sbjct:  1301 GMSTAVSNAYDMAGWLGVKDHGLYNF-PSSVRPVPLKMYIDGFPDNLAFCPLM----KTM 1355

Query:   365 NRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
             N+ + +   Q S    KP     + RR +R
Sbjct:  1356 NKPVFMAIKQHSPD--KPALIFVASRRQTR 1383

 Score = 148 (57.2 bits), Expect = 4.3e-19, Sum P(3) = 4.3e-19
 Identities = 41/149 (27%), Positives = 71/149 (47%)

Query:   443 PAIWFIFNRRGCD-AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK- 500
             PA+ F+ +RR     A+  +  C + D      + +  +     Y   V +  +K  L+ 
Sbjct:  1371 PALIFVASRRQTRLTALDLIHLCGMEDNPRRF-LNIDDEEELQYYLSQVTDDTLKLSLQF 1429

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS--G 558
             G+  HHAG +   +S   +LFQ+  ++++ AT TLA G+N+PA   ++       A   G
Sbjct:  1430 GIGLHHAGLVQKDRSISHQLFQKNKIQILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEG 1489

Query:   559 RIQLTSNELFQMAGRAGRRGIDNRGHVVL 587
                +   ++ QM GRAGR   D  G  ++
Sbjct:  1490 YRDMDLTDILQMMGRAGRPAYDTTGTAIV 1518

 Score = 132 (51.5 bits), Expect = 3.6e-09, Sum P(5) = 3.6e-09
 Identities = 40/155 (25%), Positives = 77/155 (49%)

Query:   491 REPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL- 548
             R+  +K + + G   HHAG     ++  E++F+ G +KV+  T TLA G+N+PA   ++ 
Sbjct:   583 RDKDMKEIFQFGFGIHHAGMARSDRNLTEKMFKDGAIKVLCCTATLAWGVNLPADCVIIK 642

Query:   549 -SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
              + +      G I L  +++ Q+ GR GR G  +     ++ T  +  +    L+     
Sbjct:   643 GTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILCTSNDRLDHYVSLI-TQQH 701

Query:   608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKAL 642
             P+ S+F +   +V NL A   +  ++N  + ++ L
Sbjct:   702 PIESRFGSK--LVDNLNAEISLGSVTNVDEAIEWL 734

 Score = 110 (43.8 bits), Expect = 2.1e-10, Sum P(4) = 2.1e-10
 Identities = 42/153 (27%), Positives = 78/153 (50%)

Query:   204 RIFYTTPLKALSNQKFREFRETFGDNNVGL--LTGDSAINREAQILIMTTEILRNMLYQS 261
             ++ Y  PLKAL+ +   +F +     N+ +  LTGD  + + A+IL     +     +  
Sbjct:   348 KVIYVAPLKALAAEIVDKFSKKLAPFNIQVRELTGDMQLTK-AEILATQVIVTTPEKWDV 406

Query:   262 VGM-VSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSA 312
             V    + ++ L   V ++++DEVH L +  RG+V E ++    ++V+       II LSA
Sbjct:   407 VTRKANGDNDLVSKVKLLIIDEVHLLHE-DRGSVIETLVARTLRQVESSQSMIRIIGLSA 465

Query:   313 TVANADELAGWIGQIHGKTELI--TSSRRPVPL 343
             T+ N  ++A ++G ++ +  +     S RP PL
Sbjct:   466 TLPNFMDVADFLG-VNRQIGMFYFDQSFRPKPL 497

 Score = 49 (22.3 bits), Expect = 3.6e-09, Sum P(5) = 3.6e-09
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query:   950 DTVKFTEEKIKRLKARSKRLTK-RI-EQIE-PSGWKEFLRISNVIHETRALD 998
             D +KF EE+ K LK  S    + +I  Q++ P G K  + +   I +TR  D
Sbjct:   839 DGIKFREEESKELKRLSDESVECQIGSQLDTPQG-KANVLLQAYISQTRIFD 889

 Score = 45 (20.9 bits), Expect = 4.3e-19, Sum P(3) = 4.3e-19
 Identities = 15/72 (20%), Positives = 33/72 (45%)

Query:   912 SFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTK 971
             +F     +E   +Q+ K     ++I R  G+K+   + D + F   + +  K R   + +
Sbjct:  1797 TFSEQGFIEMTPQQKKKKLLTLEEIGRF-GYKKLLNVFDQLTFGMTESEDTKKRFVSVCQ 1855

Query:   972 RIEQIEPSGWKE 983
             R+  +E   ++E
Sbjct:  1856 RLPVLEGMKFEE 1867

 Score = 44 (20.5 bits), Expect = 3.6e-09, Sum P(5) = 3.6e-09
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query:  1049 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL 1086
             +GI  R W+    + + S  +++ I++L   R   LE+
Sbjct:  1245 DGIS-RNWQTRKFVQDVSLIIMDEIHLLASDRGPILEM 1281

 Score = 42 (19.8 bits), Expect = 2.1e-10, Sum P(4) = 2.1e-10
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query:   170 AFLRGSSVVVSAPTSSGKT 188
             A+    ++++ APT +GKT
Sbjct:   299 AYKTNENMLICAPTGAGKT 317

 Score = 42 (19.8 bits), Expect = 0.00082, Sum P(4) = 0.00082
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query:   203 RRIFYTTP-LKALSNQKFREFRETFGDNNVG-----LLTGDSAINREAQILIMTTEILR 255
             RRI  T P ++ L   +  E  E   +   G     +L+    IN EA+I  +TT ++R
Sbjct:   955 RRIRDTKPSMEHLLELEADELGELVHNKKAGSRLYKILSRFPKINIEAEIFPITTNVMR 1013


>UNIPROTKB|G4N3Z7 [details] [associations]
            symbol:MGG_05900 "Uncharacterized protein" species:242507
            "Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR001650 InterPro:IPR003583 InterPro:IPR003593
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00278 SMART:SM00382 SMART:SM00490 GO:GO:0005524
            EMBL:CM001233 GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
            SMART:SM00973 GO:GO:0008026 KO:K15271 RefSeq:XP_003711726.1
            ProteinModelPortal:G4N3Z7 EnsemblFungi:MGG_05900T0 GeneID:2684075
            KEGG:mgr:MGG_05900 Uniprot:G4N3Z7
        Length = 1508

 Score = 190 (71.9 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
 Identities = 62/200 (31%), Positives = 102/200 (51%)

Query:   150 DELASIYDFRI-DKFQRSSIEAFLR-GSSVVVSAPTSSGKTLIXXXXX---XXXXXNQR- 203
             D L  ++ F + +  Q  S  +  +   +VVVSAPT SGKT I             +Q  
Sbjct:   243 DRLRVVFPFELFNAVQSKSFASVYKTNDNVVVSAPTGSGKTAIFELAICKLLSQNTDQNF 302

Query:   204 RIFYTTPLKALSNQKFREFRETFGDNNV--GLLTGDSAIN-----REAQILIMTTEILRN 256
             ++ Y  P KAL +++ R++   F   N+    LTGD+        R AQI++ T E L +
Sbjct:   303 KVIYVAPTKALCSERARDWESKFRHLNLTSAELTGDTFSTDMSRVRAAQIIVTTPEKLDS 362

Query:   257 MLYQSVGMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEV---QIICLSA 312
             +  +          L D V ++++DEVH+L D +RG   E +I     +V   +++ LSA
Sbjct:   363 ITRRW----EDYRKLLDLVQLVLIDEVHFLKD-TRGATLEVLICRMKTQVSNIRVVALSA 417

Query:   313 TVANADELAGWIGQIHGKTE 332
             TV N++++A W+G+  G T+
Sbjct:   418 TVPNSEDVAKWLGR--GNTD 435

 Score = 132 (51.5 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
 Identities = 31/94 (32%), Positives = 48/94 (51%)

Query:   500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
             +GVA HHAG     +  +E+ +  G + V+  T TL+ G+N+P  T +L           
Sbjct:   542 QGVAFHHAGLEQQDRLAVEKAYLEGKLHVICCTSTLSVGVNLPCHTVILKGTMGFQDGKL 601

Query:   560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593
             ++ +  E+ QM GRAGR   DN   V ++ T  E
Sbjct:   602 LEYSDLEVVQMLGRAGRPQFDNSA-VAIILTRSE 634

 Score = 47 (21.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 26/89 (29%), Positives = 36/89 (40%)

Query:   566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
             EL +     G  G+ ++    L+Q P  G     KL   G+  + S   A Y  + N+L 
Sbjct:   885 ELLRSINAGGWEGLPSQ----LLQVPGIGPVSMRKLTTHGITNMASLREADYMAIENILT 940

Query:   626 GAKVMHLSNESDDMKAL-QAGR--SLEEA 651
               K     N  D MK   + G   SL EA
Sbjct:   941 -RKPPFGKNLMDTMKTFPKLGLELSLSEA 968


>SGD|S000000974 [details] [associations]
            symbol:BRR2 "RNA-dependent ATPase RNA helicase (DEIH box)"
            species:4932 "Saccharomyces cerevisiae" [GO:0005682 "U5 snRNP"
            evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
            evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IDA;IMP] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0000388 "spliceosome
            conformational change to release U4 (or U4atac) and U1 (or U11)"
            evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 SGD:S000000974
            GO:GO:0005524 GO:GO:0005681 GO:GO:0005682 GO:GO:0003676
            EMBL:BK006939 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GeneTree:ENSGT00700000104562 InterPro:IPR004179 Pfam:PF02889
            SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
            EMBL:U18922 KO:K12854 OrthoDB:EOG4MD17F GO:GO:0046540 GO:GO:0004004
            PIR:S50675 RefSeq:NP_011099.1 PDB:3HIB PDB:3IM1 PDB:3IM2
            PDBsum:3HIB PDBsum:3IM1 PDBsum:3IM2 ProteinModelPortal:P32639
            SMR:P32639 DIP:DIP-850N IntAct:P32639 MINT:MINT-606933
            STRING:P32639 PaxDb:P32639 EnsemblFungi:YER172C GeneID:856919
            KEGG:sce:YER172C CYGD:YER172c OMA:RDTHESS EvolutionaryTrace:P32639
            NextBio:983377 Genevestigator:P32639 GermOnline:YER172C
            GO:GO:0000388 Uniprot:P32639
        Length = 2163

 Score = 168 (64.2 bits), Expect = 7.2e-18, Sum P(3) = 7.2e-18
 Identities = 50/149 (33%), Positives = 80/149 (53%)

Query:   483 RILYPDA--VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 539
             +IL  +A  V +P+++ L++ G+  HHAG     +S  E+LF  GL++V+  T TLA G+
Sbjct:   779 QILKTEAANVLDPSLRKLIESGIGTHHAGLTRSDRSLSEDLFADGLLQVLVCTATLAWGV 838

Query:   540 NMPARTAVLSSL---SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE 596
             N+PA T ++      S    S   QL+  ++ QM GRAGR   D  G  +++ T     +
Sbjct:   839 NLPAHTVIIKGTDVYSPEKGSWE-QLSPQDVLQMLGRAGRPRYDTFGEGIII-TDQSNVQ 896

Query:   597 ECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
                 +L   + P+ SQF +   +V NL A
Sbjct:   897 YYLSVLNQQL-PIESQFVSK--LVDNLNA 922

 Score = 162 (62.1 bits), Expect = 7.2e-18, Sum P(3) = 7.2e-18
 Identities = 83/289 (28%), Positives = 123/289 (42%)

Query:   170 AFLRGSSVVVSAPTSSGKT---LIXXXXXXXXXXNQR---------RIFYTTPLKALSNQ 217
             AF   S++++ APT SGKT   L+          N +         +I Y  PLKAL  +
Sbjct:   510 AFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKALVQE 569

Query:   218 KFREF--RETFGDNNVGLLTGDSAINR----EAQILIMTTEILRNMLYQSVGMVSSESGL 271
             + REF  R  F    V  LTGDS ++R    E Q+L+ T E        S  +   E   
Sbjct:   570 QVREFQRRLAFLGIKVAELTGDSRLSRKQIDETQVLVSTPEKWDITTRNSNNLAIVEL-- 627

Query:   272 FDVDVIVLDEVHYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWI 324
               V ++++DE+H L D  RG V E I+        Y  +  +II LSAT+ N +++  ++
Sbjct:   628 --VRLLIIDEIHLLHD-DRGPVLESIVARTFWASKYGQEYPRIIGLSATLPNYEDVGRFL 684

Query:   325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 384
                        SS RP PL+  F        L  +K K MN       L+      +   
Sbjct:   685 RVPKEGLFYFDSSFRPCPLSQQFCGIKERNSL--KKLKAMNDACYEKVLESINEGNQIIV 742

Query:   385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA--IRRSQVPQVID 431
                SR+  SR  A    N        H+L+KN   +  I +++   V+D
Sbjct:   743 FVHSRKETSRT-ATWLKNKFAEENITHKLTKNDAGSKQILKTEAANVLD 790

 Score = 42 (19.8 bits), Expect = 7.2e-18, Sum P(3) = 7.2e-18
 Identities = 5/22 (22%), Positives = 16/22 (72%)

Query:   807 YDTQDVKPSYYVALGSDNTWYT 828
             ++  ++ P++++ L S+N W++
Sbjct:  1279 HNQNNLPPNFFLTLISENWWHS 1300


>UNIPROTKB|Q5H9U9 [details] [associations]
            symbol:DDX60L "Probable ATP-dependent RNA helicase
            DDX60-like" species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG4581 HOGENOM:HOG000169263 HOVERGEN:HBG107797
            EMBL:AL832950 EMBL:CR933601 EMBL:AC079926 EMBL:AC093888
            EMBL:AK055595 IPI:IPI00853133 IPI:IPI00935252 RefSeq:NP_001012985.1
            UniGene:Hs.535011 ProteinModelPortal:Q5H9U9 STRING:Q5H9U9
            PhosphoSite:Q5H9U9 DMDM:74755482 PaxDb:Q5H9U9 PRIDE:Q5H9U9
            Ensembl:ENST00000260184 Ensembl:ENST00000505890
            Ensembl:ENST00000511577 GeneID:91351 KEGG:hsa:91351 UCSC:uc003irq.4
            CTD:91351 GeneCards:GC04M169277 HGNC:HGNC:26429 HPA:HPA043211
            neXtProt:NX_Q5H9U9 PharmGKB:PA162383445 InParanoid:Q5H9U9
            OMA:AQDSVYL GenomeRNAi:91351 NextBio:77184 ArrayExpress:Q5H9U9
            Bgee:Q5H9U9 CleanEx:HS_DDX60L Genevestigator:Q5H9U9 Uniprot:Q5H9U9
        Length = 1706

 Score = 191 (72.3 bits), Expect = 9.1e-18, Sum P(2) = 9.1e-18
 Identities = 94/342 (27%), Positives = 155/342 (45%)

Query:   319 ELAGWI--GQIHGKTELITSSRRPVPLTWYFSTK--TALLPLLDEKGKHMNRKLSLNYLQ 374
             EL  WI  GQ+  K + +  +  P  L+   S+K    + PLL EK + M+ KL   +  
Sbjct:  1059 ELTNWIKNGQVK-KVKRVLKNLSPDSLS---SSKDMVKMFPLLVEKLRQMD-KLPAIFFL 1113

Query:   375 LSTSEVKPYKDGGS-----RRRNSRKHADMNSNNIVTSFGQ--HQLSKNSINAIRRSQVP 427
                 +V   K  GS      +  ++ H     ++ V +  +   ++ K      +++  P
Sbjct:  1114 FKNDDVG--KRAGSVCTFLEKTETKSHPHTECHSYVFAIDEVLEKVRKTQKRITKKN--P 1169

Query:   428 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEM-SEV----ELALKRF 482
             +  + L   +       I F+ N +     ++  EDC   D   + +E+    +  L+R 
Sbjct:  1170 KKAEKL-ERKKVYRAEYINFLENLK----ILEISEDCTYADVKALHTEITRNKDSTLERV 1224

Query:   483 --RILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 539
               R+ +    +E  +K L  +G+  HH+      K F+E LF +GL++VV ATETLA GI
Sbjct:  1225 LPRVRFTRHGKE--LKALAQRGIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALGI 1282

Query:   540 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 599
             +MP ++ V        A   + L +    QM+GRAGRRG D  G+V     P    +   
Sbjct:  1283 HMPCKSVVF-------AQDSVYLDALNYRQMSGRAGRRGQDLLGNVYFFDIPLPKIK--- 1332

Query:   600 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKA 641
             +LL + V  L  QF  S  +VL L+  A      ++ +D KA
Sbjct:  1333 RLLASSVPELRGQFPLSITLVLRLMLLASK---GDDPEDAKA 1371

 Score = 125 (49.1 bits), Expect = 9.1e-18, Sum P(2) = 9.1e-18
 Identities = 49/184 (26%), Positives = 74/184 (40%)

Query:   155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXX--XXXXXXXNQRRIFYTTPLK 212
             + DF  + +Q+  ++   +  S V+ APTSSGKT              +   + Y  P K
Sbjct:   739 VQDFIPNAWQQELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLRESDVGVVVYVAPAK 798

Query:   213 ALSNQKF----REFRETF--GDNNVGLLTGDSAIN-REAQILIMTTEILRNMLYQSVGMV 265
             +L  Q        F +T   G    G  T D   N    Q+LI   E    +L       
Sbjct:   799 SLVGQVAATVENRFTKTLPAGRTLCGAFTRDYCHNVLNCQVLITVPECFEILLLAP---- 854

Query:   266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEE--IIIYCPKEVQIICLSATVANADELAGW 323
               +  +  +  ++ DEVHYL        WE   +II CP     + LSAT+ N + L  W
Sbjct:   855 HRQKWVERIRYVIFDEVHYLGREVGAKFWELLLVIIRCP----FLVLSATINNPNLLTKW 910

Query:   324 IGQI 327
             +  +
Sbjct:   911 LQSV 914


>CGD|CAL0003134 [details] [associations]
            symbol:orf19.3980 species:5476 "Candida albicans" [GO:0042788
            "polysomal ribosome" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0002181 "cytoplasmic translation" evidence=IEA]
            [GO:0006417 "regulation of translation" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
            SMART:SM00490 CGD:CAL0003134 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
            InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
            eggNOG:COG1204 GO:GO:0008026 EMBL:AACQ01000012 EMBL:AACQ01000011
            RefSeq:XP_721889.1 RefSeq:XP_722050.1 ProteinModelPortal:Q5AK41
            STRING:Q5AK41 GeneID:3636313 GeneID:3636419 KEGG:cal:CaO19.11463
            KEGG:cal:CaO19.3980 Uniprot:Q5AK41
        Length = 1929

 Score = 188 (71.2 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
 Identities = 76/243 (31%), Positives = 115/243 (47%)

Query:   175 SSVVVSAPTSSGKTLIXXXXXXXXXXN--QRRIFYTTPLKALSNQKFREFRETFGDNN-- 230
             SSV V +PT SGKT++               ++ Y  P+KAL  ++  ++RE    N   
Sbjct:  1130 SSVFVGSPTGSGKTVVAELAIWHAFNEFPSSKVVYIAPMKALVRERVDDWRERICKNTSH 1189

Query:   231 -VGLLTGDS--AIN--REAQILIMTTE----ILRNMLYQSVGMVSSESGLFDVDVIVLDE 281
              +  LTGDS   I   +EA I+I T E    I RN  +Q+   V        V ++++DE
Sbjct:  1190 RLVELTGDSLPTIQEVKEADIIITTPEKFDGISRN--WQTRKFVQQ------VSLVIMDE 1241

Query:   282 VHYLSDISRGTVWEEIII---YCP----KEVQIICLSATVANADELAGWIGQIHGKTELI 334
             +H L+   RG + E I+    Y      K ++++ +S  V+NA ++AGW+G  +G     
Sbjct:  1242 IHLLAS-DRGPILEMIVSRMNYISSQTKKPIRLLGMSTAVSNAFDMAGWLGVKNGLFNF- 1299

Query:   335 TSSRRPVPLTWY---FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
               S RPVPL  Y   F    A  PL+    K MN+   +   Q S +  KP     + RR
Sbjct:  1300 PQSVRPVPLQMYIDGFPENLAFCPLM----KTMNKPAFMAIKQHSPN--KPVLIFVASRR 1353

Query:   392 NSR 394
              +R
Sbjct:  1354 QTR 1356

 Score = 143 (55.4 bits), Expect = 5.2e-11, Sum P(5) = 5.2e-11
 Identities = 39/126 (30%), Positives = 65/126 (51%)

Query:   491 REPAIKGL-LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL- 548
             R   +K L + G   HHAG L   ++  E++F+ G +KV+  T TLA G+N+PA   ++ 
Sbjct:   556 RSKELKELFVHGFGVHHAGMLRSDRNLTEKMFESGAIKVLCCTATLAWGVNLPAAVVIVK 615

Query:   549 -SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
              + +    A G + L  +++ Q+ GRAGR   +  G  +L  T  +  +    LL     
Sbjct:   616 GTQVYDSKAGGFVDLGISDVIQIFGRAGRPQYEKFGTGILCTTS-DKLDHYVSLL-TQQH 673

Query:   608 PLVSQF 613
             P+ S+F
Sbjct:   674 PIESKF 679

 Score = 137 (53.3 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
 Identities = 34/106 (32%), Positives = 59/106 (55%)

Query:   490 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
             V++  ++  L+ G+  HHAG +   +    +LF++G ++++ AT TLA G+N+PA   ++
Sbjct:  1390 VKDDTLRLSLQFGMGLHHAGLVESDRQISHKLFEQGKIQILIATSTLAWGVNLPAHLVII 1449

Query:   549 SSL----SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 590
                    +K  A   + LT  ++ QM GRAGR   D  G + +V T
Sbjct:  1450 KGTQFFDAKIEAYRDMDLT--DILQMMGRAGRPAYDTSG-IAIVYT 1492

 Score = 122 (48.0 bits), Expect = 5.2e-11, Sum P(5) = 5.2e-11
 Identities = 48/156 (30%), Positives = 82/156 (52%)

Query:   204 RIFYTTPLKALSNQ---KFREFRETFGDNNVGLLTGDSAINRE----AQILIMTTEILRN 256
             +I Y  PLKAL+ +   K+ +  +  G N V  LTGD  + R+     QI++ T E    
Sbjct:   319 KIVYVAPLKALAAEIVEKYSKKLKWLGIN-VRELTGDMQLTRQEIINTQIIVTTPEKWDV 377

Query:   257 MLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IIC 309
             +  +S G   SE  +  V ++++DEVH L +  RG+V E ++    ++V+       ++ 
Sbjct:   378 VTRKSTG--DSEL-VAKVKLLIIDEVHLLHE-DRGSVIETLVARTLRQVESTQSMIRVVG 433

Query:   310 LSATVANADELAGWIGQIHGKTELI--TSSRRPVPL 343
             LSAT+ N  ++A ++G ++    +     S RPVPL
Sbjct:   434 LSATLPNYMDVADFLG-VNRSVGMFYFDQSFRPVPL 468

 Score = 45 (20.9 bits), Expect = 5.2e-11, Sum P(5) = 5.2e-11
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query:  1049 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL 1086
             +GI  R W+    + + S  +++ I++L   R   LE+
Sbjct:  1219 DGIS-RNWQTRKFVQQVSLVIMDEIHLLASDRGPILEM 1255

 Score = 43 (20.2 bits), Expect = 5.2e-11, Sum P(5) = 5.2e-11
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query:   950 DTVKFTEEKIKRLK 963
             D++KF EE+ K LK
Sbjct:   811 DSIKFREEESKELK 824

 Score = 42 (19.8 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query:   170 AFLRGSSVVVSAPTSSGKT 188
             A+    +++V APT +GKT
Sbjct:   266 AYNTNENMLVCAPTGAGKT 284


>ZFIN|ZDB-GENE-060503-421 [details] [associations]
            symbol:helq "helicase, POLQ-like" species:7955
            "Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR010995 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-060503-421 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
            EMBL:BX649525 CTD:113510 IPI:IPI00799443 RefSeq:XP_691411.3
            UniGene:Dr.86132 Ensembl:ENSDART00000109412 GeneID:562952
            KEGG:dre:562952 NextBio:20884669 Uniprot:F1Q4P2
        Length = 1010

 Score = 171 (65.3 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
 Identities = 52/184 (28%), Positives = 90/184 (48%)

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
             G+A HH+G     +  +EE +  G++ ++  T TLAAGIN+PAR  +L S     A+  +
Sbjct:   560 GLAYHHSGLTSDERKLVEEAYSSGVLCLLTCTSTLAAGINLPARRVILRS--PYVAADFL 617

Query:   561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM- 619
             + +  +  QM GRAGR GID  G  +L+    +      KLL A +E   S      G  
Sbjct:   618 KRSQYK--QMVGRAGRAGIDAMGESILILQDKD-INTAKKLLCAPMEKCYSNLLHDGGRG 674

Query:   620 VLNLLAGAKVMHLSNESDDMKALQAGRSL--EEARKLVEQSFGNYVGSNVMLAAKDELCK 677
             +L+L+     + ++   + +K L  G  L  +EA+   E+S  +    ++    +  L +
Sbjct:   675 LLSLILSLIGLKITTTVEQVKDLMKGTFLGVQEAQVSPEKSLWDLTVESIQTLKQKNLIE 734

Query:   678 IQKE 681
             +  +
Sbjct:   735 VSSD 738

 Score = 138 (53.6 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
 Identities = 51/198 (25%), Positives = 90/198 (45%)

Query:   167 SIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRR-IFYTTPLKALSNQKFREFRET 225
             S+++  +  +++ S PTS GKTL+           +++      P  +L  +K R    +
Sbjct:   266 SLDSIQQRRNLIYSLPTSGGKTLVAEILIFKELLCRKKDALLILPYISLVQEKVRGL-SS 324

Query:   226 FG---DNNVGLLTGDSA----INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIV 278
             FG   D  V    G       + R  +  +  T I +   +  V  +     L ++ ++V
Sbjct:   325 FGIELDFLVEEYAGSKGKFPPVKRRNKNSLYITTIEKG--HSLVNSLIENDRLDNIGLVV 382

Query:   279 LDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGWIGQIHGKTELIT 335
             +DE+H L D SRG + E     I+Y  K  Q+I +SAT+ N  +L  ++     + E  T
Sbjct:   383 VDELHMLGDGSRGAILEMTLSKILYMSKSTQVIGMSATLGNVKDLQSFL-----RAENYT 437

Query:   336 SSRRPVPLTWYFSTKTAL 353
             ++ RPV L  Y   K ++
Sbjct:   438 NNFRPVELKEYVKIKDSI 455

 Score = 51 (23.0 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
 Identities = 34/150 (22%), Positives = 62/150 (41%)

Query:   461 LEDC--NLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKG--VAAHHAGCLP---IW 513
             +E C  NLL +     + L L    +     V +  +K L+KG  +    A   P   +W
Sbjct:   660 MEKCYSNLLHDGGRGLLSLILSLIGLKITTTVEQ--VKDLMKGTFLGVQEAQVSPEKSLW 717

Query:   514 KSFIEE---LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
                +E    L Q+ L++V  + E      N       ++ L + T  G + L+  ++   
Sbjct:   718 DLTVESIQTLKQKNLIEVS-SDEN-----NQ--NILQITRLGRATYKGSVDLSYCDVLYR 769

Query:   571 AGRAGRRGI--DNRGHVVLVQTPYEGAEEC 598
                 G  G+  ++  H+V + TPY+   +C
Sbjct:   770 DLSKGLEGLLLNSFLHLVYLVTPYDMVHQC 799

 Score = 45 (20.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
 Identities = 24/89 (26%), Positives = 41/89 (46%)

Query:   571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA----- 625
             AG++ R+ +D    VV+V   Y        L    +  +  +F  + G V  LL+     
Sbjct:   836 AGQSVRKSVD----VVVVNRLYLALVLFSLLKETNLWIVSERFQLTRGFVQTLLSSASAF 891

Query:   626 GAKVMHLSNESDDMKALQAGRSLEEARKL 654
             G+ V+H + E ++  A +A  S E  R+L
Sbjct:   892 GSSVLHFTEELEEFWAYKALLS-ELTRRL 919


>CGD|CAL0001532 [details] [associations]
            symbol:orf19.3098 species:5476 "Candida albicans" [GO:0005682
            "U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] [GO:0000388 "spliceosome conformational change to
            release U4 (or U4atac) and U1 (or U11)" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0001532 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
            eggNOG:COG1204 KO:K12854 GO:GO:0008026 EMBL:AACQ01000086
            EMBL:AACQ01000085 RefSeq:XP_715407.1 RefSeq:XP_715477.1
            ProteinModelPortal:Q5A0Z8 STRING:Q5A0Z8 GeneID:3642881
            GeneID:3642903 KEGG:cal:CaO19.10610 KEGG:cal:CaO19.3098
            Uniprot:Q5A0Z8
        Length = 1987

 Score = 183 (69.5 bits), Expect = 2.6e-17, Sum P(3) = 2.6e-17
 Identities = 47/162 (29%), Positives = 84/162 (51%)

Query:   435 HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA 494
             H   +D    I F+ +R+      +YL +   +D  E   V+  LK+      +++  P 
Sbjct:   603 HQSLQDRHQLIIFVHSRKETFTTAKYLMEKLDIDIVEQEGVKEILKQ----EGESMSNPK 658

Query:   495 IKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
             +K ++ +G   HHAG     +  +E+LF +G ++V+ +T TLA G+N+PA T ++     
Sbjct:   659 LKEVIPRGFGIHHAGLTKKDRGVVEDLFAQGYLRVLVSTATLAWGVNLPAHTVIIKGTET 718

Query:   554 RTA-SGR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593
              +  SG  +QL+  ++ QM GRAGR   D  G  +++ +  E
Sbjct:   719 YSPESGAWVQLSPQDILQMLGRAGRPRYDKNGEGIIITSQDE 760

 Score = 138 (53.6 bits), Expect = 2.6e-17, Sum P(3) = 2.6e-17
 Identities = 55/199 (27%), Positives = 92/199 (46%)

Query:   169 EAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQR----------RIFYTTPLKALSNQK 218
             +AF   +++++ APT +GKT +          N R          +I Y  PLKAL  ++
Sbjct:   384 QAFETDNNLLICAPTGAGKTNVAMLTILRTIENFRNNGHIQLKNFKIVYIAPLKALVQEQ 443

Query:   219 FREFRETFGDNN---VGLLTGDSAINR----EAQILIMTTEILRNMLYQSVGMVSSESGL 271
              REF+          V  LTGDS++++    E QI++ T E    +  +    V      
Sbjct:   444 MREFQRRLTSVYGVVVNELTGDSSLSKQQIAETQIIVTTPEKWDIITRKDPSYVKL---- 499

Query:   272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK-------EVQIICLSATVANADELAGWI 324
               V ++++DE+H L D  RG V E ++    +       +++I+ LSAT+ N  ++A +I
Sbjct:   500 --VKLMIIDEIHLLHD-ERGPVLESLVSRAIRKSETTGSDIRIVGLSATLPNYADVAKFI 556

Query:   325 GQIHGKTELITSSRRPVPL 343
                        +S RP PL
Sbjct:   557 RAKPEGLFYFDASYRPCPL 575

 Score = 122 (48.0 bits), Expect = 0.00024, Sum P(3) = 0.00024
 Identities = 40/201 (19%), Positives = 95/201 (47%)

Query:   145 EMIDVDELASIYDF-RIDKFQRSSIEAFLRG-SSVVVSAPTSSGKTLIXXXXXXXXXXNQ 202
             +++  + +  ++ F   +K Q S+ +      ++V + +    GKT++          N+
Sbjct:  1191 DLVPTETVGDLFPFTHFNKLQSSTFDTVYNSENNVFIGSSKGDGKTVLAELAILNHWNNK 1250

Query:   203 R-RIFYTTPLKALSNQKFREFRETFG--DNNVGLLTG----DSAINREAQILIMTTEILR 255
             + RI Y  P + L ++ F+++   F   +  + +L+G    DSA   ++ +++ T E   
Sbjct:  1251 KGRIVYINPCQELVDKLFKKWSTFFSSYEKEINVLSGNLREDSASVNQSHLILATPEQF- 1309

Query:   256 NMLYQSVGMVSSESGLFDVDVIVLDEVHYL-SDISRGTVWEEIIIYCPK----EVQIICL 310
             N L +      +      +D+ + D++H + SD+    +   + +   +    +++I+ L
Sbjct:  1310 NCLSKRW---KTRKAFRSIDLFIWDDLHLVGSDVHYEMLVTRVRMLTSQWDDYKLRIVAL 1366

Query:   311 SATVANADELAGWIGQIHGKT 331
             S+ V N+ ++A WIG    +T
Sbjct:  1367 SSPVLNSRDIAEWIGVAKSET 1387

 Score = 72 (30.4 bits), Expect = 5.8e-06, Sum P(3) = 5.8e-06
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query:   486 YPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 532
             Y   ++ P +K LL KG+A  ++G   + +  +E LF+   + V+F T
Sbjct:  1466 YISKIQNPLLKNLLPKGIAVFYSGMARVDRLIVERLFESKSIGVLFCT 1513

 Score = 44 (20.5 bits), Expect = 2.6e-17, Sum P(3) = 2.6e-17
 Identities = 9/33 (27%), Positives = 21/33 (63%)

Query:  1068 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 1100
             TV +++++ DE R+  L+L ++   E+   ++S
Sbjct:  1840 TVYDIMSLEDEERNEILQLPDQELNEVASFVNS 1872


>UNIPROTKB|Q8IY21 [details] [associations]
            symbol:DDX60 "Probable ATP-dependent RNA helicase DDX60"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0045087 "innate immune response" evidence=IEA] [GO:0051607
            "defense response to virus" evidence=IEA] [GO:0009615 "response to
            virus" evidence=IDA] [GO:0003725 "double-stranded RNA binding"
            evidence=IDA] [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0003727 "single-stranded RNA binding"
            evidence=IDA] [GO:1900245 "positive regulation of MDA-5 signaling
            pathway" evidence=IMP] [GO:1900246 "positive regulation of RIG-I
            signaling pathway" evidence=IMP] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003727 GO:GO:0045087 GO:GO:0051607 GO:GO:0009615
            GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 EMBL:AC068989 EMBL:BC007820
            EMBL:BC038115 EMBL:AK001649 IPI:IPI00217606 RefSeq:NP_060101.3
            UniGene:Hs.591710 ProteinModelPortal:Q8IY21 SMR:Q8IY21
            IntAct:Q8IY21 STRING:Q8IY21 PhosphoSite:Q8IY21 DMDM:296439377
            PaxDb:Q8IY21 PRIDE:Q8IY21 Ensembl:ENST00000393743 GeneID:55601
            KEGG:hsa:55601 UCSC:uc003irp.3 CTD:55601 GeneCards:GC04M169137
            HGNC:HGNC:25942 HPA:HPA046952 MIM:613974 neXtProt:NX_Q8IY21
            PharmGKB:PA162383444 eggNOG:COG4581 HOGENOM:HOG000169263
            HOVERGEN:HBG107797 InParanoid:Q8IY21 OMA:QDCTYAD OrthoDB:EOG4XSKP0
            PhylomeDB:Q8IY21 GenomeRNAi:55601 NextBio:60142 ArrayExpress:Q8IY21
            Bgee:Q8IY21 CleanEx:HS_DDX60 Genevestigator:Q8IY21 GO:GO:1900245
            GO:GO:1900246 Uniprot:Q8IY21
        Length = 1712

 Score = 176 (67.0 bits), Expect = 6.8e-17, Sum P(3) = 6.8e-17
 Identities = 58/182 (31%), Positives = 88/182 (48%)

Query:   462 EDCNLLDECEMSEVELALKRF-RILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEE 519
             +DC   D+ +  + E   K F R+ +     E  +K L  +G+  HH+      K  +E 
Sbjct:  1222 QDCTYADQ-KAVDTETLQKVFGRVKFERKGEE--LKALAERGIGYHHSAMSFKEKQLVEI 1278

Query:   520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 579
             LF++G ++VV AT TLA G+NMP ++ V        A   + L +    QM+GRAGRRG 
Sbjct:  1279 LFRKGYLRVVTATGTLALGVNMPCKSVVF-------AQNSVYLDALNYRQMSGRAGRRGQ 1331

Query:   580 DNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDM 639
             D  G V     P+    +  KL+ + V  L   F  S  +VL L+  A      ++ +D 
Sbjct:  1332 DLMGDVYFFDIPFP---KIGKLIKSNVPELRGHFPLSITLVLRLMLLASK---GDDPEDA 1385

Query:   640 KA 641
             KA
Sbjct:  1386 KA 1387

 Score = 141 (54.7 bits), Expect = 6.8e-17, Sum P(3) = 6.8e-17
 Identities = 48/186 (25%), Positives = 79/186 (42%)

Query:   155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXX--XXXXXXXNQRRIFYTTPLK 212
             + DF  D +QR  ++   +  S V+ APTSSGKT              +   + Y  P K
Sbjct:   759 VQDFIPDTWQRELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLKESDDGVVVYVAPTK 818

Query:   213 ALSNQKFREFRETF------GDNNVGLLTGD---SAINREAQILIMTTEILRNMLYQSVG 263
             AL NQ     +  F      G+   G+ T +    A+N   Q+LI        +L     
Sbjct:   819 ALVNQVAATVQNRFTKNLPSGEVLCGVFTREYRHDALN--CQVLITVPACFEILLLAP-- 874

Query:   264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY--CPKEVQIICLSATVANADELA 321
                 ++ +  +  ++ DEVH L       +WE +++   CP     + LSAT++N + L 
Sbjct:   875 --HRQNWVKKIRYVIFDEVHCLGGEIGAEIWEHLLVMIRCP----FLALSATISNPEHLT 928

Query:   322 GWIGQI 327
              W+  +
Sbjct:   929 EWLQSV 934

 Score = 46 (21.3 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query:   132 VEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIE--AFLRGSSVVVSA 181
             +EK  + +K+  NEM+          F +DKF    ++   FL+    +V++
Sbjct:   438 LEKKPSPIKDSSNEMVPNLGFIPTSSFVVDKFAGDILKDLPFLKSDDPIVTS 489

 Score = 42 (19.8 bits), Expect = 6.8e-17, Sum P(3) = 6.8e-17
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query:   436 LRSRDMLPAIWFIFNRRGCDAAVQ 459
             LR  + LPA++F+F     + A +
Sbjct:  1121 LRKMEKLPALFFLFKLGAVENAAE 1144

 Score = 39 (18.8 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query:   129 WQRVEKLCNE-VKEFGNEMI 147
             W R ++LC E    F N+++
Sbjct:  1044 WPRAQELCPENFIHFNNKLV 1063


>FB|FBgn0038344 [details] [associations]
            symbol:CG5205 species:7227 "Drosophila melanogaster"
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
            "helicase activity" evidence=ISS] [GO:0005682 "U5 snRNP"
            evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0030532 "small nuclear ribonucleoprotein complex"
            evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00382 SMART:SM00490 EMBL:AE014297
            GO:GO:0005524 GO:GO:0006200 GO:GO:0005682 GO:GO:0003676
            GO:GO:0004386 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC
            InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
            GO:GO:0008026 GO:GO:0016779 FlyBase:FBgn0038344 RefSeq:NP_650472.2
            UniGene:Dm.1213 ProteinModelPortal:Q9VF56 SMR:Q9VF56
            EnsemblMetazoa:FBtr0083147 GeneID:41891 KEGG:dme:Dmel_CG5205
            UCSC:CG5205-RA InParanoid:Q9VF56 PhylomeDB:Q9VF56 GenomeRNAi:41891
            NextBio:826131 ArrayExpress:Q9VF56 Bgee:Q9VF56 Uniprot:Q9VF56
        Length = 2183

 Score = 174 (66.3 bits), Expect = 9.6e-17, Sum P(3) = 9.6e-17
 Identities = 60/188 (31%), Positives = 96/188 (51%)

Query:   175 SSVVVSAPTSSGKTLIXXXXXXXXXXNQR---RIFYTTPLKALSNQKFREFRETFGDNNV 231
             ++V++ APT SGKT++          NQ    ++ Y  PLKAL  ++  ++ + F  +++
Sbjct:  1353 NNVLLGAPTGSGKTIVAEIAIFRAL-NQNPKCKVVYIAPLKALVKERIADWEQRFQRSSL 1411

Query:   232 GL----LTGD-----SAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEV 282
             GL    LTGD      AI RE+Q+++ T E    +   S    + E  +  V +IV+DE+
Sbjct:  1412 GLKVVELTGDVTPDIQAI-RESQLIVTTPEKWDGI---SRSWQTREY-VQHVSLIVIDEI 1466

Query:   283 HYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQIHGKTELIT 335
             H L +  RG V E I+        +  + ++I+ LS  +ANA +LA W+G          
Sbjct:  1467 HLLGE-DRGPVIEVIVSRTNFISSHTGRAIRIVGLSTALANAQDLANWLGINKMGLYNFK 1525

Query:   336 SSRRPVPL 343
              S RPVPL
Sbjct:  1526 PSVRPVPL 1533

 Score = 145 (56.1 bits), Expect = 9.6e-17, Sum P(3) = 9.6e-17
 Identities = 37/103 (35%), Positives = 54/103 (52%)

Query:   490 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
             +RE  +K  L  G+  HHAG     +  +EELF    ++++ AT TLA G+N+PA   V+
Sbjct:  1614 IREQNLKFCLAFGIGLHHAGLQEQDRKCVEELFLNRKIQILVATATLAWGVNLPAHLVVI 1673

Query:   549 SSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRG-HVVLV 588
                       +  + +   ++ QM GRAGR   DN G  VVLV
Sbjct:  1674 KGTEYFDGKVKKYVDMPITDVLQMMGRAGRPQFDNEGVAVVLV 1716

 Score = 136 (52.9 bits), Expect = 1.7e-08, Sum P(4) = 1.7e-08
 Identities = 41/128 (32%), Positives = 58/128 (45%)

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-GR 559
             G+A HHAG L   +  +E+ F  G + V+  T TLA G+N+PA   ++       A  G 
Sbjct:   788 GLAMHHAGMLRADRQMVEKYFVEGHISVLVCTATLAWGVNLPAHAVIIRGTDIYDAKHGS 847

Query:   560 -IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
              + L   ++ Q+ GRAGR   D  G V  + T Y+       LL     P+ S F     
Sbjct:   848 FVDLGILDVLQIFGRAGRPQFDKSG-VGTIITSYDKLNHYLSLL-TNQFPIESNFVNCLA 905

Query:   619 MVLNLLAG 626
               LN   G
Sbjct:   906 DNLNAEIG 913

 Score = 100 (40.3 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
 Identities = 47/158 (29%), Positives = 75/158 (47%)

Query:   204 RIFYTTPLKALSNQKFREFRETFGDNNVGL--LTGDSAINRE----AQILIMTTEILRNM 257
             +I Y  P+KAL+ +    F +      + +  LTGD  + +      QIL+ T E    +
Sbjct:   542 KIVYIAPMKALAAEMVDNFSKRLKSLQIAVRELTGDIQLTKAEMAATQILVTTPEKWDVV 601

Query:   258 LYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICL 310
               +  G V+  S L  V+++++DEVH L    RG V E ++    + V+       I+ L
Sbjct:   602 TRKGSGDVALIS-L--VELLIIDEVHLLHG-ERGPVVEALVARTLRLVESSQSMIRIVGL 657

Query:   311 SATVANADELAGWIGQIHGKTELITSSR-RPVPLTWYF 347
             SAT+ N  ++A ++     K      SR RPVPL   F
Sbjct:   658 SATLPNYIDVAHFLRVNPMKGLFYFDSRFRPVPLDTNF 695

 Score = 94 (38.1 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
 Identities = 47/196 (23%), Positives = 87/196 (44%)

Query:   128 KWQRVEKLCNEVKEF--GNEMIDVDELASI--YDF----RIDKFQRSSIE-AFLRGSSVV 178
             +W+ V+   +E      GN+ + ++EL  +    F     +++ Q      A+    +++
Sbjct:   447 QWEEVKIPASEPPPLSVGNKRVQIEELDDVGRLAFANCKELNRIQSVVFPVAYHSNENML 506

Query:   179 VSAPTSSGKTLIXXXXXXXXXX----------NQRRIFYTTPLKALSNQKFREFRETFGD 228
             V APT +GKT +                    ++ +I Y  P+KAL+ +    F +    
Sbjct:   507 VCAPTGAGKTNVAMLSIVHTIRCHLEQGVINRDEFKIVYIAPMKALAAEMVDNFSKRLKS 566

Query:   229 NNVGL--LTGDSAINRE----AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEV 282
               + +  LTGD  + +      QIL+ T E    +  +  G V+  S L  V+++++DEV
Sbjct:   567 LQIAVRELTGDIQLTKAEMAATQILVTTPEKWDVVTRKGSGDVALIS-L--VELLIIDEV 623

Query:   283 HYLSDISRGTVWEEII 298
             H L    RG V E ++
Sbjct:   624 HLLHG-ERGPVVEALV 638

 Score = 49 (22.3 bits), Expect = 1.7e-08, Sum P(4) = 1.7e-08
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query:  1049 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL 1086
             +GI  R W+    +   S  VI+ I++L E R   +E+
Sbjct:  1443 DGIS-RSWQTREYVQHVSLIVIDEIHLLGEDRGPVIEV 1479

 Score = 43 (20.2 bits), Expect = 1.7e-08, Sum P(4) = 1.7e-08
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query:   810 QDVKPSYYVALGSDNTW 826
             + + P YY+ + SDN W
Sbjct:  1271 EPLPPQYYIRVSSDN-W 1286

 Score = 42 (19.8 bits), Expect = 9.6e-17, Sum P(3) = 9.6e-17
 Identities = 38/184 (20%), Positives = 84/184 (45%)

Query:   699 RRLLSEAAYKEMANLQEELKAEKRFRTELRRRM--ELKRFSAL--KD--ILKDFENGHLP 752
             RRLL   +Y ++ +++ E      F + L  R+  EL   + L  +D  ++  F      
Sbjct:  1772 RRLLRNPSYYQLQDIEPE--NVNNFMSNLVERVVYELSAAACLVERDGCLIPTFLGRISS 1829

Query:   753 FLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRL-AQSNGDDYDTQD 811
             +  L Y+    ++H +  +  G    +++ K+  + +I DS+  ++L  + N D ++ + 
Sbjct:  1830 YYYLSYRT---MKHFLEDLQPG----MNTKKV--LLAIADSYEFDQLPVRHNEDKHNEEM 1880

Query:   812 VKPSYYVALGSDNTW-YTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWE 870
              + S +    S  +W  ++T+ ++  + +  F   +L   D L  +T S L D    + +
Sbjct:  1881 AEVSRFRPPSS--SWDSSYTKTFL--LLQAHFARQSLPNSDYLT-DTKSAL-DNATRVMQ 1934

Query:   871 KLAD 874
              + D
Sbjct:  1935 AMVD 1938

 Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query:   283 HYLSDISRGTVWEEIIIYCPKE-VQIICLSATVANADELAGWI 324
             HYLS ++     E   + C  + +       T+ N DE   W+
Sbjct:   885 HYLSLLTNQFPIESNFVNCLADNLNAEIGLGTITNVDEAIEWL 927


>UNIPROTKB|J9P160 [details] [associations]
            symbol:HELQ "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
            GO:GO:0008026 CTD:113510 EMBL:AAEX03016730 RefSeq:XP_544959.2
            Ensembl:ENSCAFT00000044378 GeneID:487837 KEGG:cfa:487837
            Uniprot:J9P160
        Length = 1072

 Score = 163 (62.4 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
 Identities = 50/170 (29%), Positives = 82/170 (48%)

Query:   493 PAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
             P +K  +  GVA HH+G     +  +EE +  G++ +   T TLAAG+N+PAR  +L   
Sbjct:   602 PILKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVIL--- 658

Query:   552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP--- 608
              +     +  L  N+  QM GRAGR GID+ G  +L+    +  ++  +L+   +E    
Sbjct:   659 -RAPYVAKEFLKRNQYKQMIGRAGRAGIDSIGESILILQEKD-KQQVLELISRPLENCYS 716

Query:   609 -LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQ 657
              LV +FT     +   L G K+   +   DD+     G      +K++ Q
Sbjct:   717 HLVQEFTKGIQTLFLSLIGLKI---ATNLDDIYHFMCGTFFGVQQKILLQ 763

 Score = 137 (53.3 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
 Identities = 59/214 (27%), Positives = 96/214 (44%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXXXNQRR-IFYTTPLKALSNQKFREFRETFGDNNVGLL 234
             +++ S PTS GKTL+           +RR +    P  A+  +K      +FG   +G  
Sbjct:   326 NLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGL-SSFGIE-LGFF 383

Query:   235 TGDSA--------INREAQ--ILIMTTEILRNMLYQSVGMVSSESG-LFDVDVIVLDEVH 283
               + A        I R  +  + I T E   N L  S+     E+G +  + ++V+DE+H
Sbjct:   384 VEEYAGSKGKFPPIKRRGKKSLYIATIE-KGNSLVNSL----IETGRISSLGLVVVDELH 438

Query:   284 YLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRP 340
              + + SRG + E     ++Y  K  QII +SAT+ N ++L  ++     + E  TS  RP
Sbjct:   439 MIGEGSRGAILEMTLAKVLYTSKTTQIIGMSATLTNVEDLQKFL-----QAEYYTSQFRP 493

Query:   341 VPLTWYFSTKTALLPLLD--EKGKHMNRKLSLNY 372
             V L  Y     A+  +    E G   +R L+  Y
Sbjct:   494 VELKEYLKINDAIYEVDSKAENGMTFSRLLNCQY 527

 Score = 50 (22.7 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query:   548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGI--DNRGHVVLVQTPYEGAEECC 599
             ++ L + +  G I L    +     + G  G+  ++  H++ + TPY+ A  CC
Sbjct:   802 ITKLGRASFKGTIDLAYCNILYRDLKKGLEGLVLESLLHLIYLTTPYDMAS-CC 854


>UNIPROTKB|E2RST3 [details] [associations]
            symbol:HELQ "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
            GO:GO:0008026 OMA:SRPLENC EMBL:AAEX03016730
            Ensembl:ENSCAFT00000014486 Uniprot:E2RST3
        Length = 1106

 Score = 163 (62.4 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
 Identities = 50/170 (29%), Positives = 82/170 (48%)

Query:   493 PAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
             P +K  +  GVA HH+G     +  +EE +  G++ +   T TLAAG+N+PAR  +L   
Sbjct:   636 PILKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVIL--- 692

Query:   552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP--- 608
              +     +  L  N+  QM GRAGR GID+ G  +L+    +  ++  +L+   +E    
Sbjct:   693 -RAPYVAKEFLKRNQYKQMIGRAGRAGIDSIGESILILQEKD-KQQVLELISRPLENCYS 750

Query:   609 -LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQ 657
              LV +FT     +   L G K+   +   DD+     G      +K++ Q
Sbjct:   751 HLVQEFTKGIQTLFLSLIGLKI---ATNLDDIYHFMCGTFFGVQQKILLQ 797

 Score = 137 (53.3 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
 Identities = 59/214 (27%), Positives = 96/214 (44%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXXXNQRR-IFYTTPLKALSNQKFREFRETFGDNNVGLL 234
             +++ S PTS GKTL+           +RR +    P  A+  +K      +FG   +G  
Sbjct:   360 NLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGL-SSFGIE-LGFF 417

Query:   235 TGDSA--------INREAQ--ILIMTTEILRNMLYQSVGMVSSESG-LFDVDVIVLDEVH 283
               + A        I R  +  + I T E   N L  S+     E+G +  + ++V+DE+H
Sbjct:   418 VEEYAGSKGKFPPIKRRGKKSLYIATIE-KGNSLVNSL----IETGRISSLGLVVVDELH 472

Query:   284 YLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRP 340
              + + SRG + E     ++Y  K  QII +SAT+ N ++L  ++     + E  TS  RP
Sbjct:   473 MIGEGSRGAILEMTLAKVLYTSKTTQIIGMSATLTNVEDLQKFL-----QAEYYTSQFRP 527

Query:   341 VPLTWYFSTKTALLPLLD--EKGKHMNRKLSLNY 372
             V L  Y     A+  +    E G   +R L+  Y
Sbjct:   528 VELKEYLKINDAIYEVDSKAENGMTFSRLLNCQY 561

 Score = 50 (22.7 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query:   548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGI--DNRGHVVLVQTPYEGAEECC 599
             ++ L + +  G I L    +     + G  G+  ++  H++ + TPY+ A  CC
Sbjct:   836 ITKLGRASFKGTIDLAYCNILYRDLKKGLEGLVLESLLHLIYLTTPYDMAS-CC 888


>UNIPROTKB|F1NYH9 [details] [associations]
            symbol:HELQ "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
            OMA:SRPLENC EMBL:AADN02009041 IPI:IPI00596471
            Ensembl:ENSGALT00000018274 Uniprot:F1NYH9
        Length = 995

 Score = 167 (63.8 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
 Identities = 87/312 (27%), Positives = 137/312 (43%)

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
             GVA HH+G     +  IEE + RG++ ++  T TLAAG+N+PAR  +L +     AS  +
Sbjct:   546 GVAYHHSGLTNDERKSIEEAYSRGVLCLLACTATLAAGVNLPARRVILRA--PYVASEFL 603

Query:   561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK-LLFAGVEP----LVSQFTA 615
             +   N+  QM GRAGR GIDN G  +LV    E  +   + L+ + +E     L+ + T 
Sbjct:   604 K--KNQYKQMIGRAGRAGIDNAGESILVVQ--EKDKHLVRDLITSPLENCYSNLLPEITK 659

Query:   616 SYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDEL 675
                 +L  L G K+     E            +++   L E+S    V        +DEL
Sbjct:   660 GMQYLLLSLVGLKIAVTQEEVYSFMC-HTLLGVQQQLLLKEKSLSEIV--------RDEL 710

Query:   676 CKIQKETDVLTSEISD-DAIDRKSRRLLSEAAYKEMANLQ--EELKAEKRFRTE---LRR 729
               +  E  +L  +I D ++    +  LL +A YK   ++     L  E R   E   L  
Sbjct:   711 ENLI-EKGLLKGKIMDQNSKSTLTVTLLGKATYKGSIDVSYCNLLYKELRKGLEGLVLES 769

Query:   730 RMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMAS 789
              + L   +   D++ +     + +L  Q+      E  V A  +G  +S  + K    A 
Sbjct:   770 SLHLLYLATPYDMVSNCSPDWMIYL-RQFNQLSSAEQKV-ADMVGVPESFIAKKASGQAI 827

Query:   790 IN--DSFALNRL 799
                 DS A+NRL
Sbjct:   828 RKNVDSTAVNRL 839

 Score = 131 (51.2 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
 Identities = 54/234 (23%), Positives = 108/234 (46%)

Query:   152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXX-NQRRIFYTTP 210
             + ++Y+++ D     S++   +  +++ S PTS GKTL+            Q+ +    P
Sbjct:   240 IETLYEWQHDCLTLKSLQ---QRKNLIYSLPTSGGKTLVAEILILQELLCRQKDVLMILP 296

Query:   211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSV----GMVS 266
               A+  +K      +FG   +G L  + A   + +   +   I +++   ++     +V+
Sbjct:   297 YVAIVQEKVWGL-SSFGIE-LGFLVEEYA-GSKGRFPPIKRRIKKSLYIATIEKGHALVN 353

Query:   267 S--ESG-LFDVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADEL 320
             S  E+  + D+ ++V+DE+H + + SRG V E     I+Y  K   ++ +SAT+ N  +L
Sbjct:   354 SLIETDRIDDLGLVVVDELHMIGEGSRGAVLEMTLAKILYASKNTHVVGMSATLNNVGDL 413

Query:   321 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD--EKGKHMNRKLSLNY 372
               ++     + E  T + RPV L  Y   +  +  +    E G   +R L+  Y
Sbjct:   414 QKFL-----QAEYYTKNFRPVELKEYIKIRDTIYEVDSKAENGFTFSRLLNFKY 462


>RGD|1584010 [details] [associations]
            symbol:Hfm1 "HFM1, ATP-dependent DNA helicase homolog (S.
            cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 RGD:1584010 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0008026
            GeneTree:ENSGT00550000074822 IPI:IPI00766186
            Ensembl:ENSRNOT00000033794 UCSC:RGD:1584010 Uniprot:F1LWY1
        Length = 954

 Score = 175 (66.7 bits), Expect = 2.3e-16, Sum P(3) = 2.3e-16
 Identities = 48/150 (32%), Positives = 72/150 (48%)

Query:   440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG-L 498
             D  P + F   R+G   A   L    + D   +  VE  L+  +  Y  ++R+  +K  L
Sbjct:   256 DQKPTLVFCATRKGVQQAASVL----VKDAKFIITVEQKLRLQKSAY--SIRDSKLKDTL 309

Query:   499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
             + GV  HHAG     +  +EELF  G + V+F T TLA G+N+PA   V+ S    T   
Sbjct:   310 VYGVGYHHAGMELSDRKLVEELFTSGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYTGGA 369

Query:   559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
               + +  ++ QM GRAGR   D     V++
Sbjct:   370 FEEYSETDILQMIGRAGRPQFDTTATAVIM 399

 Score = 132 (51.5 bits), Expect = 2.3e-16, Sum P(3) = 2.3e-16
 Identities = 47/155 (30%), Positives = 77/155 (49%)

Query:   178 VVSAPTSSGKTLIXXXXXXXXXXN------QRRIFYTTPLKALSNQKFREFRETFGDNNV 231
             V+ APT SGKT++                   ++ Y  P+KAL +Q+F +++E FG   +
Sbjct:    31 VICAPTGSGKTVVFELAITRLLMEAPLPWLNMKVVYMAPIKALCSQRFDDWKEKFGP--I 88

Query:   232 GL----LTGDSAINREAQI----LIMTTEILRNMLYQSVGMVSSESGLFD-VDVIVLDEV 282
             GL    LTGD+ ++   +I    +IMTT       + S+     ++     V + ++DEV
Sbjct:    89 GLTCKELTGDTVMDDLFEIQHANIIMTTP----EKWDSMTRKWRDNSFIQLVRLFLIDEV 144

Query:   283 HYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA 317
             H + D +RG   E +++   K VQ   LS T+ NA
Sbjct:   145 HVIKDENRGPTLE-VVVSRMKTVQ--SLSKTLENA 176

 Score = 79 (32.9 bits), Expect = 5.6e-11, Sum P(3) = 5.6e-11
 Identities = 34/131 (25%), Positives = 60/131 (45%)

Query:   234 LTGDSAINREAQI----LIMTTEILRNMLYQSVGMVSSESGLFD-VDVIVLDEVHYLSDI 288
             LTGD+ ++   +I    +IMTT       + S+     ++     V + ++DEVH + D 
Sbjct:    95 LTGDTVMDDLFEIQHANIIMTTP----EKWDSMTRKWRDNSFIQLVRLFLIDEVHVIKDE 150

Query:   289 SRGTVWEEIIIYC--------------PKEVQIICLSATVANADELAGWI--GQIHGKTE 332
             +RG   E ++                 P  V+ + +SAT+ NA+++A W+  G+      
Sbjct:   151 NRGPTLEVVVSRMKTVQSLSKTLENASPAPVRFVAVSATIPNAEDIAEWLSDGERPAVCL 210

Query:   333 LITSSRRPVPL 343
              +  S RPV L
Sbjct:   211 KMDESHRPVKL 221

 Score = 38 (18.4 bits), Expect = 2.3e-16, Sum P(3) = 2.3e-16
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query:   627 AKVMHLSNESDDMKALQAGRSLEEARKL 654
             AKV  +S+   D+K+  A  S   A++L
Sbjct:   902 AKVSAVSSYLSDLKSRDAVSSFPPAKRL 929


>MGI|MGI:2176740 [details] [associations]
            symbol:Helq "helicase, POLQ-like" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
            [GO:0006259 "DNA metabolic process" evidence=ISO] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0017116 "single-stranded
            DNA-dependent ATP-dependent DNA helicase activity" evidence=ISO]
            [GO:0017117 "single-stranded DNA-dependent ATP-dependent DNA
            helicase complex" evidence=ISO] InterPro:IPR001650
            InterPro:IPR010995 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:2176740 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
            SUPFAM:SSF47794 GO:GO:0017116 CTD:113510 OMA:SRPLENC
            OrthoDB:EOG4THVSJ EMBL:BC082601 EMBL:BC109169 EMBL:BC109170
            EMBL:AK052427 EMBL:AF436846 IPI:IPI00226287 IPI:IPI00886160
            IPI:IPI00890018 RefSeq:NP_001074576.1 UniGene:Mm.21469
            ProteinModelPortal:Q2VPA6 SMR:Q2VPA6 STRING:Q2VPA6
            PhosphoSite:Q2VPA6 PRIDE:Q2VPA6 Ensembl:ENSMUST00000044684
            GeneID:191578 KEGG:mmu:191578 UCSC:uc008yhz.1 UCSC:uc012dzs.1
            HOGENOM:HOG000110747 InParanoid:Q2VPA6 NextBio:371088 Bgee:Q2VPA6
            Genevestigator:Q2VPA6 GO:GO:0017117 Uniprot:Q2VPA6
        Length = 1069

 Score = 163 (62.4 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
 Identities = 53/192 (27%), Positives = 90/192 (46%)

Query:   447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAVREPAIKGLLK-G 501
             F  +++ C+   + L  C  L +  ++  E      +K  R +    V  P +K  +  G
Sbjct:   542 FCPSKKNCENVAEML--CKFLSKDYLNHREKEKCEVIKSLRNIGNGKVC-PVLKRTVPFG 598

Query:   502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
             +A HH+G     +  +EE +  G++ ++  T TLAAG+N+PAR  +L    +        
Sbjct:   599 IAYHHSGLTSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVIL----RAPYVANTF 654

Query:   562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP----LVSQFTASY 617
             L  N+  QM GRAGR GID  G  +L+    +  ++  +L+   +E     LV +FT   
Sbjct:   655 LKRNQYKQMVGRAGRAGIDTAGESILLLQEKD-KQQVLELISGPLETCCSHLVEEFTKGI 713

Query:   618 GMVLNLLAGAKV 629
               +   L G K+
Sbjct:   714 QALFLSLIGLKI 725

 Score = 135 (52.6 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
 Identities = 58/242 (23%), Positives = 103/242 (42%)

Query:   147 IDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXX-NQRRI 205
             + +  +  +YD++       S++      +++ S PTS GKTL+            Q+ +
Sbjct:   287 VQLKGIKKLYDWQHTCLTLRSVQ---ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDV 343

Query:   206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSA--------INREAQ--ILIMTTEILR 255
                 P  A+  +K      +FG   +G    + A        I R  +  + I T E   
Sbjct:   344 LMILPYVAIVQEKISSL-SSFGIE-LGFFVEEYAGSKGRFPPIKRREKKSLYIATIEKAH 401

Query:   256 NMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSA 312
             ++    V  +   S L  + ++V+DE+H + + SRG + E     ++Y  K  QII +SA
Sbjct:   402 SL----VNALIETSRLSTLGLVVVDELHMIGEGSRGAILEMTLAKVLYTSKTTQIIGMSA 457

Query:   313 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEK--GKHMNRKLSL 370
             T+ N ++L  ++     K E  TS  RPV L  +      +  +  +   G   +R LS 
Sbjct:   458 TLNNVEDLQAFL-----KAEYYTSQFRPVELKEFLKVNDTIYEVDSQAADGMTFSRLLSY 512

Query:   371 NY 372
              Y
Sbjct:   513 KY 514


>DICTYBASE|DDB_G0279107 [details] [associations]
            symbol:DDB_G0279107 "Helicase POLQ-like"
            species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0279107 GO:GO:0005524 GO:GO:0003676
            EMBL:AAFI02000027 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            eggNOG:COG1204 SUPFAM:SSF47794 GO:GO:0008026 RefSeq:XP_641869.1
            ProteinModelPortal:Q54X98 EnsemblProtists:DDB0205039 GeneID:8621875
            KEGG:ddi:DDB_G0279107 InParanoid:Q54X98 OMA:LTNDERE
            ProtClustDB:CLSZ2430718 Uniprot:Q54X98
        Length = 1238

 Score = 157 (60.3 bits), Expect = 3.4e-16, Sum P(3) = 3.4e-16
 Identities = 55/206 (26%), Positives = 95/206 (46%)

Query:   152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXX-NQRRIFYTTP 210
             +  +YD++ +    S++   L G +++ S PTS GKTL+             ++  +  P
Sbjct:   451 MKQLYDWQKECLSDSNL---LLGENLIYSLPTSGGKTLVAEIILFRNLLIKNKKSLFIFP 507

Query:   211 LKALSNQKFREFRETFGDNNVGL-----LTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
               ++  +K     E      + +       G   +    ++LI T E   N++   V  +
Sbjct:   508 FVSIVCEKTESMHEFSSALQIPVEGYHGCNGTIPVLPGKRLLICTIE-KANII---VNQL 563

Query:   266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEII---IYCPK-EVQIICLSATVANADELA 321
               +  L D+  +V+DE+H + D  RG + E +I   +Y  K ++QII +SAT+ N D L 
Sbjct:   564 IEDGRLLDIGCVVVDEIHMIGDGERGQLLEVLISKLLYMSKGQIQIIGMSATIPNIDNLQ 623

Query:   322 GWI-GQIHGKTELITSSRRPVPLTWY 346
              W  G ++  T       RPVPLT Y
Sbjct:   624 KWFRGGVYQGTF------RPVPLTEY 643

 Score = 152 (58.6 bits), Expect = 3.4e-16, Sum P(3) = 3.4e-16
 Identities = 43/122 (35%), Positives = 64/122 (52%)

Query:   490 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
             V E   + ++ GVA H+A      +  IE  F+   + V+ AT TL+ G+N+PAR  +L 
Sbjct:   732 VEEDFKRMIMAGVAYHNADLTNDEREVIERGFKERSLLVLCATSTLSTGVNLPARRVILR 791

Query:   550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
             S       GR  L      QM GRAGR GID  G  +L+   +   ++  KLL + ++PL
Sbjct:   792 S----PRMGRNVLDIRSYRQMVGRAGRAGIDEFGESILMCDHF-APDKAKKLLTSPMDPL 846

Query:   610 VS 611
             +S
Sbjct:   847 LS 848

 Score = 42 (19.8 bits), Expect = 0.00014, Sum P(3) = 0.00014
 Identities = 11/74 (14%), Positives = 31/74 (41%)

Query:   330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
             K  L T+++  +P   Y +    ++ +++    + N   + N    + +      +  + 
Sbjct:   166 KQSLSTNNKTNIPKNNYQNDNKKIIGIINTHNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 225

Query:   390 RRNSRKHADMNSNN 403
               N+  + + N+NN
Sbjct:   226 NNNNNNNNNNNNNN 239

 Score = 39 (18.8 bits), Expect = 3.4e-16, Sum P(3) = 3.4e-16
 Identities = 6/9 (66%), Positives = 9/9 (100%)

Query:  1143 IPKLPDVDQ 1151
             IP++PD+DQ
Sbjct:  1003 IPEIPDLDQ 1011

 Score = 38 (18.4 bits), Expect = 0.00034, Sum P(3) = 0.00034
 Identities = 8/37 (21%), Positives = 18/37 (48%)

Query:   385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 421
             +  +   N+  + + N+NN   +   +  + N+IN I
Sbjct:   212 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINGI 248


>ASPGD|ASPL0000044033 [details] [associations]
            symbol:AN2482 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] InterPro:IPR001650
            InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
            EMBL:BN001307 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 KO:K01529 OMA:FPGKHYC InterPro:IPR004179
            Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
            HOGENOM:HOG000157749 GO:GO:0008026 OrthoDB:EOG4H75KM
            EMBL:AACD01000041 RefSeq:XP_660086.1 ProteinModelPortal:Q5BAE8
            EnsemblFungi:CADANIAT00009203 GeneID:2875191 KEGG:ani:AN2482.2
            Uniprot:Q5BAE8
        Length = 2015

 Score = 160 (61.4 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
 Identities = 49/148 (33%), Positives = 70/148 (47%)

Query:   443 PAIWFIFNRRGCD-AAVQYLEDCNLLDE----CEMSEVELALKRFRILYPDAVREPAIKG 497
             P I F+ +RR     A   +  C + D       MSE +L L   R+   DA+RE     
Sbjct:  1363 PVIVFVASRRQTRLTAKDLINFCGMEDNPRRFVRMSEDDLQLNLERVK-DDALRE----A 1417

Query:   498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
             L  G+  HHAG +   +   EELF    ++++ AT TLA G+N+PA   V+       A 
Sbjct:  1418 LSFGIGLHHAGLVESDRQLAEELFANNKIQILVATSTLAWGVNLPAHLVVVKGTQFFDAK 1477

Query:   558 --GRIQLTSNELFQMAGRAGRRGIDNRG 583
               G   +   ++ QM GRAGR   D+ G
Sbjct:  1478 TEGYKDMDLTDVLQMLGRAGRPQFDSSG 1505

 Score = 142 (55.0 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
 Identities = 69/268 (25%), Positives = 114/268 (42%)

Query:   152 LASIYDFRIDKFQRSSIEAFL----RGSSVVVSAPTSSGKTLIXXXXXXXXXXNQ--RRI 205
             L  +Y  R   F     + F       ++V++ +PT SGKT+            +   ++
Sbjct:  1122 LEELYGQRFQYFNPMQTQLFHVLYHTAANVLLGSPTGSGKTVAAELAMWWAFRERPGSKV 1181

Query:   206 FYTTPLKALSNQKFREF-RETFGDNNVGL--LTGDSAIN----REAQILIMTTEILRNML 258
              Y  P+KAL  ++  ++ R       + L  LTGD+  +    R+A I+I T E      
Sbjct:  1182 VYIAPMKALVRERVMDWGRRLTAPMGLKLVELTGDNTPDTRTIRDADIIITTPE-----K 1236

Query:   259 YQSVGMV-SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIII---YCPKE----VQIICL 310
             +  +     +   +  V ++++DE+H L    RG + E I+    Y   +    V+++ +
Sbjct:  1237 WDGISRSWQTRDYVRKVSLVIIDEIHLLGG-DRGPILEIIVSRMNYIASQSKGSVRLMGM 1295

Query:   311 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWY---FSTKTALLPLLDEKGKHMNRK 367
             S   ANA +LA W+G   G       S RPVPL  Y   F  +    PL+      MNR 
Sbjct:  1296 STACANASDLANWLGVKEGLYNF-RHSVRPVPLEIYIDGFPEQRGFCPLMQS----MNRP 1350

Query:   368 LSLNYLQLST-SEVKPYKDGGSRRRNSR 394
                 +L +   S  KP     + RR +R
Sbjct:  1351 ---TFLAIKNHSPEKPVIVFVASRRQTR 1375

 Score = 119 (46.9 bits), Expect = 9.7e-13, Sum P(3) = 9.7e-13
 Identities = 48/159 (30%), Positives = 81/159 (50%)

Query:   204 RIFYTTPLKALSNQKFREF--RETFGDNNVGLLTGDSAINR----EAQILIMTTEILRNM 257
             +I Y  P+KAL+ +   +   R  +    V  LTGD  + +    E QI++ T E    +
Sbjct:   351 KIVYVAPMKALAAEVTEKLGKRLAWLGIKVRELTGDMQLTKREIVETQIIVTTPEKWDVV 410

Query:   258 LYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICL 310
               +S G   +E  +  V ++++DEVH L D  RG V E ++    ++V+       I+ L
Sbjct:   411 TRKSTG--DTEL-VQKVRLLIIDEVHMLHD-ERGAVIESLVARTQRQVESTQSLIRIVGL 466

Query:   311 SATVANADELAGWIGQIHGKTELI--TSSRRPVPLTWYF 347
             SAT+ N  ++A ++ +++    L    SS RPVPL  +F
Sbjct:   467 SATLPNYVDVADFL-KVNKMAGLFFFDSSFRPVPLEQHF 504

 Score = 81 (33.6 bits), Expect = 0.00024, Sum P(5) = 0.00024
 Identities = 52/207 (25%), Positives = 88/207 (42%)

Query:   430 IDTLWHLRSRDMLP----AIWFIFNRRGCDAAVQYLEDCNLLDECEM----SEVELALKR 481
             IDT+   + RDML      + F+ +R+      + L+   + D CE      E E     
Sbjct:   520 IDTVTFEKVRDMLERGHQVMVFVHSRKDTVLTARMLKQMAVQDGCEALFSCHEHENYSNA 579

Query:   482 FRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 540
              R +     RE  ++ L   G   HHAG   + +S       R L++      TLA G+N
Sbjct:   580 LRDMKHARARE--LRDLFASGFGTHHAG---MSRS------DRNLME-----PTLAWGVN 623

Query:   541 MPARTAVLSSLSK-RTASGR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 598
             +PA   V+          G+ + L   ++ Q+ GRAGR    + G +  + T ++     
Sbjct:   624 LPAAAVVIKGTQLYNPQEGKFVDLGILDVLQIFGRAGRPQFQDTG-IGFICTTHDKLNHY 682

Query:   599 CKLLFAGVEPLVSQFTASYGMVLNLLA 625
                +    +P+ S+F++   +V NL A
Sbjct:   683 LSAV-TSQQPIESRFSSR--LVDNLNA 706

 Score = 46 (21.3 bits), Expect = 0.00024, Sum P(5) = 0.00024
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query:  1049 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL 1086
             +GI  R W+    + + S  +I+ I++L   R   LE+
Sbjct:  1238 DGIS-RSWQTRDYVRKVSLVIIDEIHLLGGDRGPILEI 1274

 Score = 42 (19.8 bits), Expect = 9.7e-13, Sum P(3) = 9.7e-13
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query:   170 AFLRGSSVVVSAPTSSGKT 188
             A+    ++++ APT +GKT
Sbjct:   297 AYKTSENMLICAPTGAGKT 315

 Score = 39 (18.8 bits), Expect = 0.00024, Sum P(5) = 0.00024
 Identities = 8/30 (26%), Positives = 20/30 (66%)

Query:   911 MSFEYHDAVENYKEQRTKVARLKKKIARTE 940
             MS E+ D +++ + +  ++ RL+++  +TE
Sbjct:   823 MSGEF-DNIQSRENESKELTRLREEAVQTE 851


>DICTYBASE|DDB_G0290389 [details] [associations]
            symbol:ascc3 "activating signal cointegrator 1
            complex subunit" species:44689 "Dictyostelium discoideum"
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00382 SMART:SM00490 dictyBase:DDB_G0290389 GO:GO:0005524
            GO:GO:0006355 GO:GO:0006351 GenomeReviews:CM000154_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
            InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
            eggNOG:COG1204 GO:GO:0008026 EMBL:AAFI02000163 RefSeq:XP_635715.1
            ProteinModelPortal:Q54G57 EnsemblProtists:DDB0233132 GeneID:8627633
            KEGG:ddi:DDB_G0290389 InParanoid:Q54G57 KO:K15271
            ProtClustDB:CLSZ2429672 Uniprot:Q54G57
        Length = 2195

 Score = 163 (62.4 bits), Expect = 7.6e-16, Sum P(4) = 7.6e-16
 Identities = 42/138 (30%), Positives = 72/138 (52%)

Query:   488 DAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
             + V+   I+ L + G++ HHAG L   ++ +E+ F  G +KV+  T TLA G+N+PA T 
Sbjct:   766 EKVKSKEIRSLFQHGISVHHAGLLRSDRNVVEKYFANGTIKVLVCTATLAWGVNLPAHTV 825

Query:   547 VLSSLSKRTAS--GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 604
             ++       A   G + L  +++ Q+ GRAGR   D  G   L+ T  +  +    L+ +
Sbjct:   826 IIKGTQVYNAKNGGFMDLGISDVMQIFGRAGRPQFDTSGEGFLL-TSKDKLDHYLSLMSS 884

Query:   605 GVEPLVSQFTASYGMVLN 622
              + P+ S+F  +    LN
Sbjct:   885 SM-PIESKFITNLEDHLN 901

 Score = 140 (54.3 bits), Expect = 7.6e-16, Sum P(4) = 7.6e-16
 Identities = 61/199 (30%), Positives = 96/199 (48%)

Query:   204 RIFYTTPLKALSNQKFREFRETFGDNNVGL----LTGDSAIN----REAQILIMTTEILR 255
             +I Y  PLKAL+++   +F  +     +G+    LTGD  +     +E QI++ T E   
Sbjct:   539 KIIYIAPLKALASEMVEKFSNSL--KYLGIVSKELTGDMQLTQKELKETQIIVTTPE--- 593

Query:   256 NMLYQSVGMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------I 307
                +  +   SS+  L   V +I++DE+H L +  RG V E I+    ++V+       I
Sbjct:   594 --KWDVITRKSSDVALTKLVRLIIIDEIHLLHE-ERGPVLECIVARTLRQVETTQEMIRI 650

Query:   308 ICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRK 367
             + LSAT+ N  ++A +I      T    SS RPVPLT  F      + + D +G  M  K
Sbjct:   651 VGLSATLPNYKDVARFIRAPASGTHFFDSSYRPVPLTQNF------IGVKDNQGI-MVMK 703

Query:   368 LSLNYLQLSTSEVKPYKDG 386
              ++N L     E K  K+G
Sbjct:   704 NNMNQLCYERLE-KSLKEG 721

 Score = 136 (52.9 bits), Expect = 7.4e-12, Sum P(3) = 7.4e-12
 Identities = 70/297 (23%), Positives = 125/297 (42%)

Query:   490 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
             V++  ++  L  G+  HHAG     ++ +E LF    ++++ +T TLA G+N+PA   ++
Sbjct:  1602 VKDQHLRHTLSFGIGMHHAGLNDGDRTIVESLFGENKIQILISTSTLAWGVNLPAHLVII 1661

Query:   549 SSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAG 605
                       +  +     ++ QM GRAGR   D  G  +V+V  P +   +  K L+  
Sbjct:  1662 KGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKKQFYK--KFLYDP 1719

Query:   606 --VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 663
               VE  +  F   +   LN    A+++  + +S          +    R +V  S+   +
Sbjct:  1720 FPVESHLKDFLHDH---LN----AEIVSGTIQSKQGAINYLVNTFFFRRLVVSPSYYG-L 1771

Query:   664 GSNVMLAAKDELCKIQKET--DVLTS---EIS--DDAIDRKSRRLLS--EAAYKEMANLQ 714
               N + A    L  +   T  D+  S   EI+  D+ I     ++ S     YK + N  
Sbjct:  1772 EDNSVEAVNQYLSDLLDSTLADLEQSSCIEINEYDEIIPMSMGKIASFYYLNYKTVQNFS 1831

Query:   715 EELKAEKRFRTELRRRMELKRFSAL-----KDILKDFENGHLPFLCLQYKDSEGVEH 766
             + +K +   +T LR   +   +S       ++IL    N +LP     Y+DS    H
Sbjct:  1832 DNIKRDSDIKTLLRVLSDAAEYSEFPVRHNEEILNQELNENLPIKIGNYEDSHTKVH 1888

 Score = 107 (42.7 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
 Identities = 53/235 (22%), Positives = 100/235 (42%)

Query:   141 EFGNEMIDVDELASIYDFRIDKFQRSSIE-AFLRGSSVVVSAPTSSGKT---LIXXXXXX 196
             E G  + ++   A     ++++ Q    E A+    ++++SAPT +GKT   L+      
Sbjct:   464 EIGESIAEISRAAFGSIKKLNRIQSRVFESAYKSNENILISAPTGAGKTNIALLTILHEI 523

Query:   197 XXXXNQR--------RIFYTTPLKALSNQKFREFRETFGDNNVGL----LTGDSAINREA 244
                 N          +I Y  PLKAL+++   +F  +     +G+    LTGD  + ++ 
Sbjct:   524 ESNINPYGYLDKDNFKIIYIAPLKALASEMVEKFSNSL--KYLGIVSKELTGDMQLTQKE 581

Query:   245 QILIMTTEILRNM--LYQSVGMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYC 301
                +  T+I+      +  +   SS+  L   V +I++DE+H L +  RG V E I+   
Sbjct:   582 ---LKETQIIVTTPEKWDVITRKSSDVALTKLVRLIIIDEIHLLHE-ERGPVLECIVART 637

Query:   302 PKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPL 356
              ++V+      T      + G    +    ++    R P   T +F +    +PL
Sbjct:   638 LRQVE------TTQEMIRIVGLSATLPNYKDVARFIRAPASGTHFFDSSYRPVPL 686

 Score = 60 (26.2 bits), Expect = 7.6e-16, Sum P(4) = 7.6e-16
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query:  1033 DLKPAQLAAVCASLVS------EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL 1086
             D  P  +A   A +V+      +GI  R WKN S +   S  +I+ I+++ E R   LE+
Sbjct:  1410 DYTPNMIALQNADIVTTTPEKWDGIS-RNWKNRSYVTSVSLLIIDEIHLIGELRGPILEV 1468

 Score = 49 (22.3 bits), Expect = 9.7e-15, Sum P(4) = 9.7e-15
 Identities = 16/68 (23%), Positives = 36/68 (52%)

Query:   655 VEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRL-LSEAAYKEMANL 713
             + + F +++ SN++L+  +++  +   +D+L  +I  D I      + LS++  KE  N+
Sbjct:  1963 INKDFADFLSSNLILSNGEQISNL---SDML--KIPRDKIHLSLTNIGLSDSQIKETLNV 2017

Query:   714 QEELKAEK 721
              + L   K
Sbjct:  2018 IDHLPKVK 2025

 Score = 41 (19.5 bits), Expect = 4.6e-06, Sum P(4) = 4.6e-06
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query:   443 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVE 476
             P  W +  R+  D A+  L    ++DE  +   E
Sbjct:   592 PEKWDVITRKSSDVALTKLVRLIIIDEIHLLHEE 625

 Score = 38 (18.4 bits), Expect = 7.6e-16, Sum P(4) = 7.6e-16
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query:   124 REEFKWQRVEKLCNEVKEFGNEMIDVDELAS 154
             +E+ K  R  ++ N+ KE   EMI  DE+ S
Sbjct:    72 KEKEKENR--QIFNKFKEIVLEMIGDDEIPS 100


>SGD|S000003220 [details] [associations]
            symbol:HFM1 "Meiosis specific DNA helicase" species:4932
            "Saccharomyces cerevisiae" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0007129 "synapsis" evidence=IGI;IMP]
            [GO:0003678 "DNA helicase activity" evidence=IDA] [GO:0007126
            "meiosis" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
            [GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0006268 "DNA unwinding involved in
            replication" evidence=IDA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00382 SMART:SM00490 SGD:S000003220 GO:GO:0005524
            GO:GO:0005634 EMBL:BK006941 GO:GO:0046872 GO:GO:0003677 EMBL:X94357
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
            InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
            eggNOG:COG1204 GO:GO:0007131 GO:GO:0008026 GO:GO:0007129
            GO:GO:0006268 KO:K15271 EMBL:Z72773 EMBL:U22156 RefSeq:NP_011263.2
            ProteinModelPortal:P51979 SMR:P51979 DIP:DIP-2604N IntAct:P51979
            MINT:MINT-426642 STRING:P51979 PaxDb:P51979 PeptideAtlas:P51979
            EnsemblFungi:YGL251C GeneID:852641 KEGG:sce:YGL251C CYGD:YGL251c
            GeneTree:ENSGT00550000074822 HOGENOM:HOG000093662 OMA:GNYECNH
            OrthoDB:EOG4WWVSR NextBio:971894 Genevestigator:P51979
            GermOnline:YGL251C Uniprot:P51979
        Length = 1187

 Score = 159 (61.0 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
 Identities = 55/217 (25%), Positives = 106/217 (48%)

Query:   125 EEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDF-RIDKFQRSSIEAFLRGS-SVVVSAP 182
             EE K  +   +    K+  +  I  D    ++ F   +K Q  +  +    + + ++S+P
Sbjct:   103 EEAKKPKKVTIRKSAKKCLSTTILPDSFRGVFKFTEFNKMQSEAFPSIYESNENCIISSP 162

Query:   183 TSSGKTLIXXXXX------XXXXXNQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236
             T SGKT++                N  +I Y  P K+L  + ++ +  +F + +VG+LT 
Sbjct:   163 TGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNWFPSFVNLSVGMLTS 222

Query:   237 DSAI--NREAQI--LIMTTEILRNMLYQSVGMVSSESGLFD-VDVIVLDEVHYLSDISRG 291
             D++     +A+   +I+TT    ++L +     S  S LF+ V ++++DE+H + +  RG
Sbjct:   223 DTSFLETEKAKKCNIIITTPEKWDLLTRRW---SDYSRLFELVKLVLVDEIHTIKE-KRG 278

Query:   292 TVWEEIII----YCPKEVQIICLSATVANADELAGWI 324
                E I+      C + ++ + LSATV N ++LA W+
Sbjct:   279 ASLEVILTRMNTMC-QNIRFVALSATVPNIEDLALWL 314

 Score = 135 (52.6 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
 Identities = 31/90 (34%), Positives = 52/90 (57%)

Query:   500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
             +G+A HHAG     ++ +E+ F  G + ++ +T TLA G+N+PA   ++   +K   S  
Sbjct:   419 QGIAFHHAGISLEDRTAVEKEFLAGSINILCSTSTLAVGVNLPAYLVIIKG-TKSWNSSE 477

Query:   560 IQLTSN-ELFQMAGRAGRRGIDNRGHVVLV 588
             IQ  S+ ++ QM GRAGR   +  G  V++
Sbjct:   478 IQEYSDLDVLQMIGRAGRPQFETHGCAVIM 507


>GENEDB_PFALCIPARUM|PF14_0370 [details] [associations]
            symbol:PF14_0370 "RNA helicase, putative"
            species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
            Pfam:PF02889 SMART:SM00973 GO:GO:0004004 KO:K01509
            RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
            EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
            EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
            ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
        Length = 2472

 Score = 151 (58.2 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
 Identities = 49/155 (31%), Positives = 79/155 (50%)

Query:   449 FNRRGCDAAVQYLEDCNLL-DECEMSEVE---LALKRFRILYPDAVREPAIKGLLK-GVA 503
             +N   CD  + Y  D NLL +  ++SE E   +A   F+  Y + +    +K +LK G+ 
Sbjct:  1761 YNNNFCDNEI-Y--DYNLLFNNSKLSEEERKNVANILFQN-YLNLIENEHLKEILKYGIG 1816

Query:   504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI--Q 561
              HHAG     K+ +E LF   +++++  T TLA GIN+PA   ++       A  +    
Sbjct:  1817 IHHAGLNENDKTIVEYLFLNKIIQILICTSTLAWGINLPAYLVIIKGNEFYDAKTKKYKD 1876

Query:   562 LTSNELFQMAGRAGRRGIDNRG-HVVLVQTPYEGA 595
             +   +L QM GRAGR   D++   ++LVQ   + A
Sbjct:  1877 IPYTDLLQMIGRAGRPQFDDKALAILLVQEKRKNA 1911

 Score = 141 (54.7 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
 Identities = 52/216 (24%), Positives = 104/216 (48%)

Query:   146 MIDVDELASIYDFR-IDKFQRSSIEA-FLRGSSVVVSAPTSSGKTLIXXXXXXXXXXN-- 201
             ++++      + F+  +  Q     A F    ++++ APT SGKT+I             
Sbjct:  1356 VLNIPNYIKFFSFKYFNPIQTQMFHATFHTDENILLGAPTGSGKTVIGELCILRNLLRCE 1415

Query:   202 -QRRIFYTTPLKALSNQKFREFRETFG---DNNVGLLTGDSAINRE----AQILIMTTEI 253
              Q+ + Y  P+KA+ N++++ ++  F    + NV  LTGD   N+E    + I+I T E 
Sbjct:  1416 GQKSV-YICPMKAIVNERYKSWKSKFKSLFNKNVIELTGDKNENKENIAESNIIICTPEK 1474

Query:   254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP-------KEVQ 306
             L +++ ++     ++  + ++++I+ DE+H L   +RG V E ++           K+++
Sbjct:  1475 L-DVITRNW---KNKKFVKNINLIIFDEIHLLGQENRGGVIEILVNRFKNMQNELNKKIR 1530

Query:   307 IICLSATVANADELAGWIGQIHGKTELITSSRRPVP 342
             +I L+  + + D+L  W+           SS R VP
Sbjct:  1531 LIGLTTVITSVDDLILWLDVKENYLFNFPSSCRIVP 1566

 Score = 134 (52.2 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
 Identities = 41/145 (28%), Positives = 71/145 (48%)

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA-SGR 559
             G   HHAG     K  +E LF++ +  V+  T TLA G+N+P  T ++   +  ++ SG+
Sbjct:   755 GCTIHHAGMSRSDKILVESLFKKKVFNVLCCTSTLAWGVNLPVHTVIIKGTNYFSSESGK 814

Query:   560 IQ-LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
             ++ +   ++ Q+ GR GR   ++ GH +L+ T      +  KLL      + S F  +  
Sbjct:   815 LEDMDILDINQIFGRCGRPQYESHGHAILI-TERTKLYKYIKLLTNNTV-IESNFLKNIE 872

Query:   619 MVLNLLAGAKVMHLSNESDDMKALQ 643
               LN  A   +  + N  D +K L+
Sbjct:   873 NHLN--AEISIGTIKNIEDGIKWLE 895

 Score = 79 (32.9 bits), Expect = 2.6e-10, Sum P(4) = 2.6e-10
 Identities = 30/105 (28%), Positives = 52/105 (49%)

Query:   204 RIFYTTPLKALSNQKFREFRETFGDNNVGLL--TGDSAIN----REAQILIMTTE----I 253
             +I Y  P+K+L  +    FR+     N+ +   T + +++     +  I++   E    +
Sbjct:   506 KIIYIAPMKSLVFEITNLFRKKLKIFNLNVCEYTKEYSLSSKELEQVHIIVTVPEKLDIL 565

Query:   254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII 298
             LRN  Y +   VS ES +  +  ++LDEVH L+   RG V E I+
Sbjct:   566 LRNSSYSTT--VSDESLIKYIKCLILDEVHLLNT-DRGDVIETIV 607

 Score = 60 (26.2 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query:   714 QEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSE-GVEHSV 768
             Q+E  + KRF         LK+ S +   L+D E G   F+   + D+  G+EH V
Sbjct:  2415 QDESISIKRFNNN-----NLKKVSVISFTLEDMEKGKYNFVIYIHNDTYYGIEHEV 2465

 Score = 58 (25.5 bits), Expect = 2.6e-10, Sum P(4) = 2.6e-10
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query:   155 IYDFRIDKFQRSSI--EAFLRGSSVVVSAPTSSGKTLI 190
             I+DF    + +S +   AF    +++V APT  GKT I
Sbjct:   334 IFDFEYFNYVQSKVFNSAFRSNKNLLVCAPTGCGKTNI 371

 Score = 37 (18.1 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query:   277 IVLDEVHYLSDISRGTVWEEIII 299
             I+++E  YL  + R   W + I+
Sbjct:    73 ILIEEKKYLKKLLRENRWNDNIL 95


>UNIPROTKB|Q8IL78 [details] [associations]
            symbol:PF14_0370 "DEAD/DEAH box helicase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001650 InterPro:IPR003593
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0004004
            KO:K01509 RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
            EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
            EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
            ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
        Length = 2472

 Score = 151 (58.2 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
 Identities = 49/155 (31%), Positives = 79/155 (50%)

Query:   449 FNRRGCDAAVQYLEDCNLL-DECEMSEVE---LALKRFRILYPDAVREPAIKGLLK-GVA 503
             +N   CD  + Y  D NLL +  ++SE E   +A   F+  Y + +    +K +LK G+ 
Sbjct:  1761 YNNNFCDNEI-Y--DYNLLFNNSKLSEEERKNVANILFQN-YLNLIENEHLKEILKYGIG 1816

Query:   504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI--Q 561
              HHAG     K+ +E LF   +++++  T TLA GIN+PA   ++       A  +    
Sbjct:  1817 IHHAGLNENDKTIVEYLFLNKIIQILICTSTLAWGINLPAYLVIIKGNEFYDAKTKKYKD 1876

Query:   562 LTSNELFQMAGRAGRRGIDNRG-HVVLVQTPYEGA 595
             +   +L QM GRAGR   D++   ++LVQ   + A
Sbjct:  1877 IPYTDLLQMIGRAGRPQFDDKALAILLVQEKRKNA 1911

 Score = 141 (54.7 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
 Identities = 52/216 (24%), Positives = 104/216 (48%)

Query:   146 MIDVDELASIYDFR-IDKFQRSSIEA-FLRGSSVVVSAPTSSGKTLIXXXXXXXXXXN-- 201
             ++++      + F+  +  Q     A F    ++++ APT SGKT+I             
Sbjct:  1356 VLNIPNYIKFFSFKYFNPIQTQMFHATFHTDENILLGAPTGSGKTVIGELCILRNLLRCE 1415

Query:   202 -QRRIFYTTPLKALSNQKFREFRETFG---DNNVGLLTGDSAINRE----AQILIMTTEI 253
              Q+ + Y  P+KA+ N++++ ++  F    + NV  LTGD   N+E    + I+I T E 
Sbjct:  1416 GQKSV-YICPMKAIVNERYKSWKSKFKSLFNKNVIELTGDKNENKENIAESNIIICTPEK 1474

Query:   254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP-------KEVQ 306
             L +++ ++     ++  + ++++I+ DE+H L   +RG V E ++           K+++
Sbjct:  1475 L-DVITRNW---KNKKFVKNINLIIFDEIHLLGQENRGGVIEILVNRFKNMQNELNKKIR 1530

Query:   307 IICLSATVANADELAGWIGQIHGKTELITSSRRPVP 342
             +I L+  + + D+L  W+           SS R VP
Sbjct:  1531 LIGLTTVITSVDDLILWLDVKENYLFNFPSSCRIVP 1566

 Score = 134 (52.2 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
 Identities = 41/145 (28%), Positives = 71/145 (48%)

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA-SGR 559
             G   HHAG     K  +E LF++ +  V+  T TLA G+N+P  T ++   +  ++ SG+
Sbjct:   755 GCTIHHAGMSRSDKILVESLFKKKVFNVLCCTSTLAWGVNLPVHTVIIKGTNYFSSESGK 814

Query:   560 IQ-LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
             ++ +   ++ Q+ GR GR   ++ GH +L+ T      +  KLL      + S F  +  
Sbjct:   815 LEDMDILDINQIFGRCGRPQYESHGHAILI-TERTKLYKYIKLLTNNTV-IESNFLKNIE 872

Query:   619 MVLNLLAGAKVMHLSNESDDMKALQ 643
               LN  A   +  + N  D +K L+
Sbjct:   873 NHLN--AEISIGTIKNIEDGIKWLE 895

 Score = 79 (32.9 bits), Expect = 2.6e-10, Sum P(4) = 2.6e-10
 Identities = 30/105 (28%), Positives = 52/105 (49%)

Query:   204 RIFYTTPLKALSNQKFREFRETFGDNNVGLL--TGDSAIN----REAQILIMTTE----I 253
             +I Y  P+K+L  +    FR+     N+ +   T + +++     +  I++   E    +
Sbjct:   506 KIIYIAPMKSLVFEITNLFRKKLKIFNLNVCEYTKEYSLSSKELEQVHIIVTVPEKLDIL 565

Query:   254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII 298
             LRN  Y +   VS ES +  +  ++LDEVH L+   RG V E I+
Sbjct:   566 LRNSSYSTT--VSDESLIKYIKCLILDEVHLLNT-DRGDVIETIV 607

 Score = 60 (26.2 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query:   714 QEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSE-GVEHSV 768
             Q+E  + KRF         LK+ S +   L+D E G   F+   + D+  G+EH V
Sbjct:  2415 QDESISIKRFNNN-----NLKKVSVISFTLEDMEKGKYNFVIYIHNDTYYGIEHEV 2465

 Score = 58 (25.5 bits), Expect = 2.6e-10, Sum P(4) = 2.6e-10
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query:   155 IYDFRIDKFQRSSI--EAFLRGSSVVVSAPTSSGKTLI 190
             I+DF    + +S +   AF    +++V APT  GKT I
Sbjct:   334 IFDFEYFNYVQSKVFNSAFRSNKNLLVCAPTGCGKTNI 371

 Score = 37 (18.1 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query:   277 IVLDEVHYLSDISRGTVWEEIII 299
             I+++E  YL  + R   W + I+
Sbjct:    73 ILIEEKKYLKKLLRENRWNDNIL 95


>POMBASE|SPBC13G1.10c [details] [associations]
            symbol:mug81 "ATP-dependent RNA helicase Slh1
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0005829 "cytosol" evidence=IDA] [GO:2000765 "regulation of
            cytoplasmic translation" evidence=ISS] InterPro:IPR001650
            InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00382 SMART:SM00490 PomBase:SPBC13G1.10c
            GO:GO:0005829 GO:GO:0005524 GO:GO:0007126 GO:GO:2000765
            EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
            InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
            eggNOG:COG1204 HOGENOM:HOG000157749 GO:GO:0004004 PIR:T39411
            RefSeq:NP_596560.1 ProteinModelPortal:O60072 PRIDE:O60072
            EnsemblFungi:SPBC13G1.10c.1 GeneID:2539673 KEGG:spo:SPBC13G1.10c
            OMA:RKPTGEG OrthoDB:EOG4H75KM NextBio:20800827 Uniprot:O60072
        Length = 1935

 Score = 163 (62.4 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
 Identities = 59/188 (31%), Positives = 94/188 (50%)

Query:   175 SSVVVSAPTSSGKTLIXXXXXXXXXXN--QRRIFYTTPLKALSNQKFREFR----ETFGD 228
             +++ V APT SGKT+           N  + ++ Y  P+KAL  ++ +++     E  G 
Sbjct:  1151 TNIFVGAPTGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGI 1210

Query:   229 NNVGLLTGDSAINREAQI---LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285
             + + L TGD+  + +A     +I+TT    + + +S     S   + DV +I+LDE+H L
Sbjct:  1211 SMIEL-TGDTNPDVKAVTNANIIITTPEKWDGITRSW---KSRKYVQDVSLIILDEIHLL 1266

Query:   286 SDISRGTVWEEIII---YCP----KEVQIICLSATVANADELAGWIGQIHGKTELITSSR 338
                 RG V E I+    Y      K+V+++ LS  VANA++LA W+    G       S 
Sbjct:  1267 GS-DRGPVLEMIVSRMNYVASQTNKKVRVLGLSTAVANANDLANWLNIRDGLFNF-RHSV 1324

Query:   339 RPVPLTWY 346
             RPVPL  Y
Sbjct:  1325 RPVPLEIY 1332

 Score = 143 (55.4 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
 Identities = 48/149 (32%), Positives = 68/149 (45%)

Query:   443 PAIWFIFNRRGCD-AAVQYLEDCNLLDECE----MSEVELALKRFRILYPDAVREPAIKG 497
             P + F+ +RR     A   +  C L D       M E EL +    I+    V + ++K 
Sbjct:  1364 PVLIFVSSRRQTRLTAKDLIAFCGLEDNPRRFLYMDEEELEM----IV--SEVEDKSLKL 1417

Query:   498 LLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
              L  G+A HHAG     +   EELF    V+++ AT TLA G+N PA   ++       A
Sbjct:  1418 ALPFGIALHHAGLTENDRKISEELFVNNKVQILIATSTLAWGVNTPAHLVIVKGTEYYDA 1477

Query:   557 S--GRIQLTSNELFQMAGRAGRRGIDNRG 583
                G   +   ++ QM GRAGR   DN G
Sbjct:  1478 KIGGYKDMDLTDVLQMLGRAGRPQFDNSG 1506

 Score = 117 (46.2 bits), Expect = 2.9e-08, Sum P(4) = 2.9e-08
 Identities = 44/175 (25%), Positives = 80/175 (45%)

Query:   463 DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELF 521
             + +LLD  +  +  LA +          +   +K L K  +  H+AG L   +   E LF
Sbjct:   553 EADLLDNSQHEKYSLAQRDV-----SKSKNKELKELFKYSMGIHNAGMLRSDRHLTERLF 607

Query:   522 QRGLVKVVFATETLAAGINMPARTAVL--SSLSKRTASGRIQLTSNELFQMAGRAGRRGI 579
               G++K++  T TLA G+N+PA   ++  + L        + L   ++ Q+ GRAGR   
Sbjct:   608 SMGILKILCCTATLAWGVNLPAYAVLIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQF 667

Query:   580 DNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSN 634
             ++   V  + T ++       ++     P+ S+FT    +V NL A   +  ++N
Sbjct:   668 ESSA-VAYIITTHDKLSHYISVV-TQQSPIESRFTDR--LVDNLNAEVSLGTVTN 718

 Score = 114 (45.2 bits), Expect = 2.9e-08, Sum P(4) = 2.9e-08
 Identities = 49/161 (30%), Positives = 80/161 (49%)

Query:   204 RIFYTTPLKALSNQKFREFRETFGDNNVGL----LTGDSAINR----EAQILIMTTEILR 255
             +I Y  P+KAL+ +   +  +      +GL    LTGD  + +    E QIL+ T E   
Sbjct:   342 KIVYIAPMKALAAEVVEKMGKRLAW--LGLKTRELTGDMQLTKTEIAETQILVTTPEKWD 399

Query:   256 NMLYQSVGMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------I 307
              +  +SVG    ++ L + V ++++DEVH L D  RG V E ++    + V+       I
Sbjct:   400 VVTRKSVG----DTQLAEKVRLVIIDEVHMLHD-ERGAVIESLVARTQRLVETSQQMIRI 454

Query:   308 ICLSATVANADELAGWIGQIHGKTELITSSR-RPVPLTWYF 347
             + LSAT+ N  ++A ++G    K     SS  RP P+  +F
Sbjct:   455 VGLSATLPNYLDVADFLGVNRYKGLFYFSSAFRPCPIEQHF 495

 Score = 51 (23.0 bits), Expect = 2.9e-08, Sum P(4) = 2.9e-08
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query:  1049 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL 1086
             +GI  R WK+   + + S  +++ I++L   R   LE+
Sbjct:  1240 DGI-TRSWKSRKYVQDVSLIILDEIHLLGSDRGPVLEM 1276

 Score = 42 (19.8 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query:   170 AFLRGSSVVVSAPTSSGKT 188
             A+    ++++ APT +GKT
Sbjct:   289 AYKTNENMLICAPTGAGKT 307


>UNIPROTKB|E9PSY5 [details] [associations]
            symbol:Helq "Protein Helq" species:10116 "Rattus
            norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 RGD:1560216 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            IPI:IPI01007603 Ensembl:ENSRNOT00000031633 ArrayExpress:E9PSY5
            Uniprot:E9PSY5
        Length = 805

 Score = 158 (60.7 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
 Identities = 52/172 (30%), Positives = 79/172 (45%)

Query:   493 PAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
             P +K  +  GVA HH+G     +  +EE +  G++ +   T TLAAG+N+PAR  +L   
Sbjct:   585 PVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVIL--- 641

Query:   552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP--- 608
              +        L  N+  QM GRAGR GID  G  +L+    +  ++   L+   +E    
Sbjct:   642 -RAPYVANTFLKRNQYKQMIGRAGRAGIDTAGESILLLQEKD-KQQVLGLINGPLEDCHS 699

Query:   609 -LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 659
              LV +FT     +   L G K   L  + D   + +  R      KL + SF
Sbjct:   700 HLVEEFTKGIQSLFLSLIGLKEKGLL-QKDSHGSPEESRCHFRITKLGQASF 750

 Score = 129 (50.5 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
 Identities = 57/230 (24%), Positives = 100/230 (43%)

Query:   155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXX-NQRRIFYTTPLKA 213
             +YD++      SS++      +++ S PTS GKTL+            Q+ +    P  A
Sbjct:   291 LYDWQHTCLTLSSVQ---ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLLILPYVA 347

Query:   214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSV-----GMVSS- 267
             +  +K      +FG   +G    + A ++     I   E  +  LY +       +V++ 
Sbjct:   348 IVQEKISSL-SSFGIE-LGFFVEEYAGSKGRFPPIKRRE--KKSLYIATIEKGHSLVNAL 403

Query:   268 -ESG-LFDVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAG 322
              E+G +  + ++V+DE+H + + SRG   E     ++Y  K  QII +SAT+ N ++L  
Sbjct:   404 IETGRMGTLGLVVVDELHMIGEGSRGATLEMTLAKVLYTSKTTQIIGMSATLNNVEDLQA 463

Query:   323 WIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 372
             ++     K E  TS  RPV L  +      +  +       M     LNY
Sbjct:   464 FL-----KAEYYTSQFRPVELKEFLKVNDTIYEVDSRAVDGMTFSRLLNY 508

 Score = 45 (20.9 bits), Expect = 0.00097, Sum P(2) = 0.00097
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query:   548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGI--DNRGHVVLVQTPYEGAEE 597
             ++ L + +  G I LT  +      + G  G+  ++  H+V + TPY+ A +
Sbjct:   742 ITKLGQASFKGAIDLTYCDTLYRDLKKGLEGLVLESLLHLVYLTTPYDLAAQ 793


>UNIPROTKB|E9PT19 [details] [associations]
            symbol:Helq "Protein Helq" species:10116 "Rattus
            norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1560216
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
            GO:GO:0008026 IPI:IPI00958253 Ensembl:ENSRNOT00000002974
            ArrayExpress:E9PT19 Uniprot:E9PT19
        Length = 879

 Score = 157 (60.3 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
 Identities = 45/142 (31%), Positives = 69/142 (48%)

Query:   493 PAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
             P +K  +  GVA HH+G     +  +EE +  G++ +   T TLAAG+N+PAR  +L   
Sbjct:   585 PVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVIL--- 641

Query:   552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP--- 608
              +        L  N+  QM GRAGR GID  G  +L+    +  ++   L+   +E    
Sbjct:   642 -RAPYVANTFLKRNQYKQMIGRAGRAGIDTAGESILLLQEKD-KQQVLGLINGPLEDCHS 699

Query:   609 -LVSQFTASYGMVLNLLAGAKV 629
              LV +FT     +   L G K+
Sbjct:   700 HLVEEFTKGIQSLFLSLIGLKI 721

 Score = 129 (50.5 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
 Identities = 57/230 (24%), Positives = 100/230 (43%)

Query:   155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXX-NQRRIFYTTPLKA 213
             +YD++      SS++      +++ S PTS GKTL+            Q+ +    P  A
Sbjct:   291 LYDWQHTCLTLSSVQ---ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLLILPYVA 347

Query:   214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSV-----GMVSS- 267
             +  +K      +FG   +G    + A ++     I   E  +  LY +       +V++ 
Sbjct:   348 IVQEKISSL-SSFGIE-LGFFVEEYAGSKGRFPPIKRRE--KKSLYIATIEKGHSLVNAL 403

Query:   268 -ESG-LFDVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAG 322
              E+G +  + ++V+DE+H + + SRG   E     ++Y  K  QII +SAT+ N ++L  
Sbjct:   404 IETGRMGTLGLVVVDELHMIGEGSRGATLEMTLAKVLYTSKTTQIIGMSATLNNVEDLQA 463

Query:   323 WIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 372
             ++     K E  TS  RPV L  +      +  +       M     LNY
Sbjct:   464 FL-----KAEYYTSQFRPVELKEFLKVNDTIYEVDSRAVDGMTFSRLLNY 508


>POMBASE|SPAC9.03c [details] [associations]
            symbol:brr2 "U5 snRNP complex subunit Brr2 (predicted)"
            species:4896 "Schizosaccharomyces pombe" [GO:0000393 "spliceosomal
            conformational changes to generate catalytic conformation"
            evidence=IGI] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
            evidence=IDA] [GO:0005682 "U5 snRNP" evidence=ISO] [GO:0005829
            "cytosol" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
            evidence=ISO] InterPro:IPR001650 InterPro:IPR003593
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00382 SMART:SM00490 PomBase:SPAC9.03c GO:GO:0005829
            GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005681
            GO:GO:0005682 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
            SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749 PIR:T39188
            RefSeq:NP_593346.1 ProteinModelPortal:Q9UT24 IntAct:Q9UT24
            STRING:Q9UT24 EnsemblFungi:SPAC9.03c.1 GeneID:2543676
            KEGG:spo:SPAC9.03c KO:K12854 OMA:KWDVLSR OrthoDB:EOG4MD17F
            NextBio:20804682 GO:GO:0046540 GO:GO:0004004 GO:GO:0000393
            Uniprot:Q9UT24
        Length = 2176

 Score = 162 (62.1 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
 Identities = 49/181 (27%), Positives = 85/181 (46%)

Query:   447 FIFNRRGCDAAVQYLEDCNLLDEC--EMSEVELALKRFRILYPDAVREPAIKGLLK-GVA 503
             F+ +R+      +++ D  L +E    +   + A +       D+  +  +K LL  G A
Sbjct:   763 FVHSRKETAKTARFIRDKALEEETIGHLLRSDAASREILRAEADSTSDENLKDLLPYGFA 822

Query:   504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI--Q 561
              HHAG     +   E+LF  G ++V+ +T TLA G+N+PA T ++      +    I  +
Sbjct:   823 IHHAGMRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTE 882

Query:   562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
             L+  ++ QM GRAGR   D  G  +++ T +   +    L+   + P+ SQF       L
Sbjct:   883 LSPQDVLQMLGRAGRPQFDTYGEGIII-TAHSELQYYLSLMNQQL-PIESQFMRRLADCL 940

Query:   622 N 622
             N
Sbjct:   941 N 941

 Score = 132 (51.5 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
 Identities = 61/212 (28%), Positives = 98/212 (46%)

Query:   170 AFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRR-----------IFYTTPLKALSNQK 218
             AF    ++++ APT +GKT +             R           I Y  PLKAL  + 
Sbjct:   531 AFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEM 590

Query:   219 FREFRETFGDNNVGL--LTGDSAINR----EAQILIMTTEILRNMLYQSVGMVSSESGLF 272
                F +     N+ +  LTGDS + +    E QI++ T E   +++ +    +S  + L 
Sbjct:   591 VNNFSKRLTPYNIRVAELTGDSQLTKQQISETQIIVTTPEKW-DIITRKANDLSYVN-L- 647

Query:   273 DVDVIVLDEVHYLSDISRGTVWEEII--IYCPKE-----VQIICLSATVANADELAGWIG 325
              V ++++DEVH L D  RG V E I+  I+  +E     V+++ LSAT+ N  ++A ++ 
Sbjct:   648 -VRLVIIDEVHLLHD-ERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFL- 704

Query:   326 QIHGKTELI--TSSRRPVPLTWYFSTKTALLP 355
              +  K  L    S+ RP PL   F   T   P
Sbjct:   705 HVDPKKGLFYFDSTYRPCPLKQEFIGITEKTP 736

 Score = 58 (25.5 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
 Identities = 22/92 (23%), Positives = 36/92 (39%)

Query:   349 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS-RKHADMNSNNIVTS 407
             T  A+L +L+E  KH+   LS N        + P K       N+  K     +  +   
Sbjct:   549 TNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSKRLTPYNIRVAEL 608

Query:   408 FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 439
              G  QL+K  I+    +Q+       W + +R
Sbjct:   609 TGDSQLTKQQIS---ETQIIVTTPEKWDIITR 637

 Score = 55 (24.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
 Identities = 15/77 (19%), Positives = 32/77 (41%)

Query:   514 KSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR--IQLTSNELFQMA 571
             ++ ++ L++ GL+KV+ A+  +   +   +   ++             I    +EL QM 
Sbjct:  1664 QNIVQYLYRHGLIKVLIASRDVIYSLKAKSNAVIVMGTQYYDGKEHRYIDYPISELLQML 1723

Query:   572 GRAGRRGIDNRGHVVLV 588
             G     G      V+L+
Sbjct:  1724 GFTASIGSSELSQVILM 1740


>RGD|1309795 [details] [associations]
            symbol:Polq "polymerase (DNA directed), theta" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003887 "DNA-directed DNA polymerase activity"
            evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
            repair" evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
            activity" evidence=ISO] InterPro:IPR001098 InterPro:IPR001650
            InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
            InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
            PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
            SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
            SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 GO:GO:0003887 OMA:CFSDESI IPI:IPI00362354
            Ensembl:ENSRNOT00000034841 UCSC:RGD:1309795 Uniprot:D4ABI8
        Length = 2540

 Score = 175 (66.7 bits), Expect = 4.0e-15, Sum P(4) = 4.0e-15
 Identities = 60/184 (32%), Positives = 92/184 (50%)

Query:   466 LLDECEMSEVELALKRFRILYPDAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRG 524
             +LD+  + EV   LKR     P  + +  +K  +  GVA HHAG     +  IE  F++G
Sbjct:   382 ILDQKSLLEVIDQLKRS----PSGL-DSVLKNTVPWGVAFHHAGLTFEERDIIEGAFRQG 436

Query:   525 LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 584
             L++V+ AT TL++G+N+PAR  ++    +    G   L      QM GRAGR+G+D  G 
Sbjct:   437 LIRVLAATSTLSSGVNLPARRVII----RTPVFGGQPLDILTYKQMVGRAGRKGVDTMGE 492

Query:   585 VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK----VMHLSNESDDMK 640
              +LV    E ++    LL   +EP V     S G V + +  A     V  +++ S DM+
Sbjct:   493 SILVCKNSEKSKGIA-LLQGSLEP-VHSCLQSQGEVTSTMIRAILEIIVSGVASTSQDMQ 550

Query:   641 ALQA 644
                A
Sbjct:   551 TYAA 554

 Score = 98 (39.6 bits), Expect = 4.0e-15, Sum P(4) = 4.0e-15
 Identities = 33/132 (25%), Positives = 61/132 (46%)

Query:   172 LRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRR-IFYTTPLKALSNQKFREFRETFGDNN 230
             L G ++V SAPTS+GKTL+            R+   +  P  +++ +K    +  F +  
Sbjct:   107 LEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFVSVAKEKKYYLQSLFQEVG 166

Query:   231 V---GLLTGDSAINREAQILIMTTEILR-NMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286
             +   G +   S   R + + +    I R N L   +  +  E+ +  +  +V+DE+H L 
Sbjct:   167 IKVDGYMGSTSPTGRFSSLDVAVCTIERANGL---INRLIEENKMDLLGTVVVDELHMLG 223

Query:   287 DISRGTVWEEII 298
             D  RG + E ++
Sbjct:   224 DSHRGYLLELLL 235

 Score = 62 (26.9 bits), Expect = 4.0e-15, Sum P(4) = 4.0e-15
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query:   305 VQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPL 343
             VQI+ +SAT+ N   +A W+       EL  +  RPVPL
Sbjct:   260 VQIVGMSATLPNLQLVASWLN-----AELYHTDFRPVPL 293

 Score = 61 (26.5 bits), Expect = 4.0e-15, Sum P(4) = 4.0e-15
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query:   725 TELRRRMEL-KRFSALKDILKDFENGH-LPFLCLQYK 759
             TE  R++ L +RFS  KDIL   ++ H LP L L+++
Sbjct:  2117 TESDRKLRLGRRFSTSKDILNKLKDLHPLPGLILEWR 2153

 Score = 42 (19.8 bits), Expect = 3.2e-13, Sum P(4) = 3.2e-13
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query:   673 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 732
             D LCK Q   ++ T  +       ++R+  S    KEM  L+  LK  K    E+ + + 
Sbjct:   966 DSLCKFQGNHEIQTPSVY------RARKRTSLGVNKEM--LRTSLKEGKPSTKEVLQTLS 1017

Query:   733 LKR 735
              ++
Sbjct:  1018 FEK 1020

 Score = 37 (18.1 bits), Expect = 1.0e-12, Sum P(4) = 1.0e-12
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query:  1085 ELQEKHGV---EIPCCLDSQ--FSGMVEAWASGLTWREM 1118
             E+ +K+G    +I     S   ++GM+  +++ L W  M
Sbjct:   737 EINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNM 775


>UNIPROTKB|D4A628 [details] [associations]
            symbol:Polq "Polymerase (DNA directed), theta (Predicted),
            isoform CRA_a" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
            repair" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
            activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
            InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
            InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
            PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
            SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006281 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
            GO:GO:0003887 GO:GO:0043142 CTD:10721 KO:K02349 OrthoDB:EOG42RD6C
            EMBL:CH473967 IPI:IPI00949142 RefSeq:NP_001099348.1
            UniGene:Rn.131176 Ensembl:ENSRNOT00000063995 GeneID:288079
            KEGG:rno:288079 NextBio:627549 Uniprot:D4A628
        Length = 2547

 Score = 175 (66.7 bits), Expect = 4.1e-15, Sum P(4) = 4.1e-15
 Identities = 60/184 (32%), Positives = 92/184 (50%)

Query:   466 LLDECEMSEVELALKRFRILYPDAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRG 524
             +LD+  + EV   LKR     P  + +  +K  +  GVA HHAG     +  IE  F++G
Sbjct:   382 ILDQKSLLEVIDQLKRS----PSGL-DSVLKNTVPWGVAFHHAGLTFEERDIIEGAFRQG 436

Query:   525 LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 584
             L++V+ AT TL++G+N+PAR  ++    +    G   L      QM GRAGR+G+D  G 
Sbjct:   437 LIRVLAATSTLSSGVNLPARRVII----RTPVFGGQPLDILTYKQMVGRAGRKGVDTMGE 492

Query:   585 VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK----VMHLSNESDDMK 640
              +LV    E ++    LL   +EP V     S G V + +  A     V  +++ S DM+
Sbjct:   493 SILVCKNSEKSKGIA-LLQGSLEP-VHSCLQSQGEVTSTMIRAILEIIVSGVASTSQDMQ 550

Query:   641 ALQA 644
                A
Sbjct:   551 TYAA 554

 Score = 98 (39.6 bits), Expect = 4.1e-15, Sum P(4) = 4.1e-15
 Identities = 33/132 (25%), Positives = 61/132 (46%)

Query:   172 LRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRR-IFYTTPLKALSNQKFREFRETFGDNN 230
             L G ++V SAPTS+GKTL+            R+   +  P  +++ +K    +  F +  
Sbjct:   107 LEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFVSVAKEKKYYLQSLFQEVG 166

Query:   231 V---GLLTGDSAINREAQILIMTTEILR-NMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286
             +   G +   S   R + + +    I R N L   +  +  E+ +  +  +V+DE+H L 
Sbjct:   167 IKVDGYMGSTSPTGRFSSLDVAVCTIERANGL---INRLIEENKMDLLGTVVVDELHMLG 223

Query:   287 DISRGTVWEEII 298
             D  RG + E ++
Sbjct:   224 DSHRGYLLELLL 235

 Score = 62 (26.9 bits), Expect = 4.1e-15, Sum P(4) = 4.1e-15
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query:   305 VQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPL 343
             VQI+ +SAT+ N   +A W+       EL  +  RPVPL
Sbjct:   260 VQIVGMSATLPNLQLVASWLN-----AELYHTDFRPVPL 293

 Score = 61 (26.5 bits), Expect = 4.1e-15, Sum P(4) = 4.1e-15
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query:   725 TELRRRMEL-KRFSALKDILKDFENGH-LPFLCLQYK 759
             TE  R++ L +RFS  KDIL   ++ H LP L L+++
Sbjct:  2124 TESDRKLRLGRRFSTSKDILNKLKDLHPLPGLILEWR 2160

 Score = 42 (19.8 bits), Expect = 3.2e-13, Sum P(4) = 3.2e-13
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query:   673 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 732
             D LCK Q   ++ T  +       ++R+  S    KEM  L+  LK  K    E+ + + 
Sbjct:   964 DSLCKFQGNHEIQTPSVY------RARKRTSLGVNKEM--LRTSLKEGKPSTKEVLQTLS 1015

Query:   733 LKR 735
              ++
Sbjct:  1016 FEK 1018

 Score = 37 (18.1 bits), Expect = 1.0e-12, Sum P(4) = 1.0e-12
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query:  1085 ELQEKHGV---EIPCCLDSQ--FSGMVEAWASGLTWREM 1118
             E+ +K+G    +I     S   ++GM+  +++ L W  M
Sbjct:   735 EINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNM 773


>UNIPROTKB|F1NMU1 [details] [associations]
            symbol:POLQ "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
            DNA polymerase activity" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0006281 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
            GO:GO:0008026 GO:GO:0003887 GO:GO:0043142 EMBL:AADN02037908
            IPI:IPI00584654 Ensembl:ENSGALT00000024072 Uniprot:F1NMU1
        Length = 904

 Score = 164 (62.8 bits), Expect = 8.9e-15, Sum P(3) = 8.9e-15
 Identities = 43/112 (38%), Positives = 63/112 (56%)

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-GR 559
             GVA HHAG     +  IE  F++  ++V+ AT TL++G+N+PAR  ++     RT   G 
Sbjct:   377 GVAFHHAGLTFDERDIIEGAFRQSTIRVLAATSTLSSGVNLPARRVII-----RTPMFGG 431

Query:   560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
               L      QMAGRAGR+G+D  G  +LV  P E ++    LL   ++P+ S
Sbjct:   432 TLLDVLTYKQMAGRAGRKGVDTEGESILVCKPSERSKGTA-LLQGSLKPVRS 482

 Score = 102 (41.0 bits), Expect = 8.9e-15, Sum P(3) = 8.9e-15
 Identities = 35/133 (26%), Positives = 62/133 (46%)

Query:   172 LRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRR-IFYTTPLKALSNQKFREFRETFG--D 228
             L G ++V SAPTS+GKTL+            R+   +  P  +++ +K    +  F   D
Sbjct:    71 LEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFVSVAKEKKCYLQALFQEVD 130

Query:   229 NNVGLLTGD-SAINREA--QILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285
               VG   G  S   R +   + + T E    ++ + +     E+ +  + V+V+DE+H L
Sbjct:   131 MRVGGYMGSISPAGRFSLLDVAVCTIEKANGLINRLI----EENQMDSLGVVVVDELHML 186

Query:   286 SDISRGTVWEEII 298
              D  RG + E ++
Sbjct:   187 GDSHRGYLLELLL 199

 Score = 63 (27.2 bits), Expect = 8.9e-15, Sum P(3) = 8.9e-15
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query:   305 VQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLT-W 345
             +Q++ +SAT+ N   LA W+       EL  +  RPVPL  W
Sbjct:   224 IQVVGMSATLPNLGLLASWLD-----AELYCTDFRPVPLKEW 260


>UNIPROTKB|G4N5J1 [details] [associations]
            symbol:MGG_06124 "Activating signal cointegrator 1 complex
            subunit 3" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
            InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
            SMART:SM00490 GO:GO:0005524 EMBL:CM001233 GO:GO:0003676
            GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
            SMART:SM00973 GO:GO:0008026 RefSeq:XP_003711991.1
            ProteinModelPortal:G4N5J1 EnsemblFungi:MGG_06124T0 GeneID:2684274
            KEGG:mgr:MGG_06124 Uniprot:G4N5J1
        Length = 1998

 Score = 156 (60.0 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
 Identities = 49/148 (33%), Positives = 70/148 (47%)

Query:   443 PAIWFIFNRRGCD-AAVQYLEDCNLLDE----CEMSEVELALKRFRILYPDAVREPAIKG 497
             P I F+ +RR     A   +  C + D       M E +L L   R+   DA++E AI  
Sbjct:  1384 PVIVFVPSRRQTRLTAKDLINMCGMEDNPRRFLNMDEDDLQLNLTRVK-DDALKE-AISF 1441

Query:   498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
                G+  HHAG +   +   EELF    ++++ AT TLA G+N+PA   V+       A 
Sbjct:  1442 ---GIGLHHAGLVESDRQLAEELFLNNKIQILVATSTLAWGVNLPAHLVVVKGTQFYDAK 1498

Query:   558 --GRIQLTSNELFQMAGRAGRRGIDNRG 583
               G   +   ++ QM GRAGR   DN G
Sbjct:  1499 IEGYKDMDLTDVLQMLGRAGRPQFDNSG 1526

 Score = 139 (54.0 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
 Identities = 68/270 (25%), Positives = 118/270 (43%)

Query:   175 SSVVVSAPTSSGKTLIXXXXXXXXXXNQ--RRIFYTTPLKALSNQKFREFRETFGDNNVG 232
             ++V++ +PT SGKT+            +   ++ Y  P+KAL  ++ +++        +G
Sbjct:  1170 ANVLLGSPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRERVKDWGARLAQP-MG 1228

Query:   233 L----LTGDSAIN----REAQILIMTTE----ILRNMLYQSVGMVSSESGLFDVDVIVLD 280
             L    LTGD+  +    ++A ++I T E    I R+  +Q+ G V        V ++++D
Sbjct:  1229 LKLVELTGDNTPDTRTIKDADVIITTPEKWDGISRS--WQTRGYVRQ------VSLVIID 1280

Query:   281 EVHYLSDISRGTVWEEIII---YCP----KEVQIICLSATVANADELAGWIGQIHGKTEL 333
             E+H L+   RG + E I+    Y        V+++ +S   ANA +L  W+G   G    
Sbjct:  1281 EIHLLAG-DRGPILEIIVSRMNYIAASTKNSVRLLGMSTACANATDLGNWLGVKEGLFNF 1339

Query:   334 ITSSRRPVPLTWY---FSTKTALLPLLDEKGKHMNRKLSLNYLQLST-SEVKPYKDGGSR 389
                S RPVPL  Y   F       PL+      MNR     +L +   S  KP       
Sbjct:  1340 -RHSVRPVPLELYIDGFPEVRGFCPLMQS----MNRP---TFLAVKNHSPTKPVIVFVPS 1391

Query:   390 RRNSRKHADMNSNNIVTSFGQHQLSKNSIN 419
             RR +R    + + +++   G     +  +N
Sbjct:  1392 RRQTR----LTAKDLINMCGMEDNPRRFLN 1417

 Score = 139 (54.0 bits), Expect = 9.0e-09, Sum P(4) = 9.0e-09
 Identities = 42/130 (32%), Positives = 70/130 (53%)

Query:   500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-G 558
             KG+  HHAG     ++ +E LF  G++KV+  T TLA G+N+PA   V+      +A  G
Sbjct:   603 KGMGIHHAGMTRSDRNLMERLFAEGVLKVLCCTATLAWGVNLPAAAVVIKGTQVYSAQEG 662

Query:   559 R-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE--PLVSQFTA 615
             + + L   ++ Q+ GRAGR   ++ G  ++  T    A++    L A  +  P+ S+F++
Sbjct:   663 KFVDLGILDVLQIFGRAGRPQFEDTGIGMICTT----ADKLSHYLTAVTDQLPIESRFSS 718

Query:   616 SYGMVLNLLA 625
                +V NL A
Sbjct:   719 K--LVDNLNA 726

 Score = 101 (40.6 bits), Expect = 9.0e-09, Sum P(4) = 9.0e-09
 Identities = 46/163 (28%), Positives = 77/163 (47%)

Query:   204 RIFYTTPLKALSNQKFREFRETFGDNNVGL------LTGDSAINR----EAQILIMTTEI 253
             +I Y  P+KAL+     E  E  G     L       TGD  + +    + QI++ T E 
Sbjct:   357 KIVYVAPMKALA----AEITEKLGKRLAWLGIRCREYTGDMHLTKTEIVQTQIIVTTPEK 412

Query:   254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ------- 306
                +  +  G   +E  +  V ++++DEVH L D  RG V E ++    ++V+       
Sbjct:   413 WDVVTRKGTG--DTEL-VQKVRLLIIDEVHMLHD-ERGAVLESLVARTERQVESTQSLIR 468

Query:   307 IICLSATVANADELAGW--IGQIHGKTELITSSRRPVPLTWYF 347
             I+ LSAT+ N  ++A +  + ++ G      +S RPVPL  +F
Sbjct:   469 IVGLSATLPNFIDVADFLKVNRMQGLF-YFDASFRPVPLEQHF 510

 Score = 46 (21.3 bits), Expect = 9.0e-09, Sum P(4) = 9.0e-09
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query:  1049 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL 1086
             +GI  R W+    + + S  +I+ I++L   R   LE+
Sbjct:  1259 DGIS-RSWQTRGYVRQVSLVIIDEIHLLAGDRGPILEI 1295

 Score = 43 (20.2 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query:   170 AFLRGSSVVVSAPTSSGKT 188
             A+    +++V APT +GKT
Sbjct:   303 AYKTNENMLVCAPTGAGKT 321

 Score = 37 (18.1 bits), Expect = 7.4e-14, Sum P(3) = 7.4e-14
 Identities = 8/18 (44%), Positives = 8/18 (44%)

Query:    16 FANTKPFSFHQFHTLSHT 33
             F    P     FHTL HT
Sbjct:  1151 FQYFNPMQTQIFHTLYHT 1168


>UNIPROTKB|F1S4E9 [details] [associations]
            symbol:HFM1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
            SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
            GeneTree:ENSGT00550000074822 EMBL:CU179709
            Ensembl:ENSSSCT00000007570 Uniprot:F1S4E9
        Length = 1438

 Score = 158 (60.7 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
 Identities = 47/151 (31%), Positives = 72/151 (47%)

Query:   440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 499
             D  P + F   R+G   A   L    + D   +  VE   +  +  Y  ++R+  ++ LL
Sbjct:   528 DQKPTLVFCATRKGVQQAASIL----VKDAKFIMTVEQKQRLHKCAY--SIRDSKLRDLL 581

Query:   500 -KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
               GVA HHAG     +  +E  F  G + V+F T TLA G+N+PA   V+ S +   A G
Sbjct:   582 IHGVAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKS-TMHYAGG 640

Query:   559 RIQ-LTSNELFQMAGRAGRRGIDNRGHVVLV 588
               +  +  ++ QM GRAGR   D     V++
Sbjct:   641 MFEEYSETDILQMIGRAGRPQFDTTATAVIM 671

 Score = 132 (51.5 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
 Identities = 50/156 (32%), Positives = 79/156 (50%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXXX------NQRRIFYTTPLKALSNQKFREFRETFGDN 229
             +VVV APT SGKT++                +  +I Y  P+KAL +Q+F +++E FG  
Sbjct:   300 NVVVCAPTGSGKTVMFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKEKFGP- 358

Query:   230 NVGL----LTGDSAINREAQI----LIMTTEILRNMLYQSVGMVSSESGLFD-VDVIVLD 280
              +GL    LTGD+ ++   +I    +IMTT       + S+     ++ L   V + ++D
Sbjct:   359 -IGLNCKELTGDTVMDDLFEIQHAHIIMTTP----EKWDSMTRKWRDNSLVQLVRLFLID 413

Query:   281 EVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316
             EVH + D +RG   E +++   K VQ   LS  V N
Sbjct:   414 EVHVVKDENRGPTLE-VVVSRMKTVQF--LSHAVEN 446

 Score = 75 (31.5 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
 Identities = 44/175 (25%), Positives = 81/175 (46%)

Query:   234 LTGDSAINREAQI----LIMTTEILRNMLYQSVGMVSSESGLFD-VDVIVLDEVHYLSDI 288
             LTGD+ ++   +I    +IMTT       + S+     ++ L   V + ++DEVH + D 
Sbjct:   366 LTGDTVMDDLFEIQHAHIIMTTP----EKWDSMTRKWRDNSLVQLVRLFLIDEVHVVKDE 421

Query:   289 SRGTVWEEII------------IYCPKEV---QIICLSATVANADELAGWI--GQIHGKT 331
             +RG   E ++            +  P+ +   + + +SAT+ NA+++A W+  G+     
Sbjct:   422 NRGPTLEVVVSRMKTVQFLSHAVENPRNIIPMRFVAVSATIPNAEDIAEWLSDGERSAIC 481

Query:   332 ELITSSRRPVPLTWYFSTKTAL-LPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
               +    RPV L      K  L  P  + + +     L+LNY +++ S V+ Y D
Sbjct:   482 LKMDEKHRPVKLR-----KVVLGFPCSNNQTE-FKFDLTLNY-KIA-SVVQTYSD 528

 Score = 43 (20.2 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query:  1143 IPKLPDVDQRLQKNAVDASNVMDRPP 1168
             IPKLP ++QR Q + + A      PP
Sbjct:  1230 IPKLPVMEQRGQ-HELYAEGQQQEPP 1254

 Score = 38 (18.4 bits), Expect = 6.3e-14, Sum P(3) = 6.3e-14
 Identities = 6/11 (54%), Positives = 10/11 (90%)

Query:   631 HLSNESDDMKA 641
             HL +E+D+MK+
Sbjct:  1419 HLDDEADEMKS 1429


>FB|FBgn0002899 [details] [associations]
            symbol:mus301 "mutagen-sensitive 301" species:7227
            "Drosophila melanogaster" [GO:0007294 "germarium-derived oocyte
            fate determination" evidence=IGI;IMP] [GO:0008298 "intracellular
            mRNA localization" evidence=IMP;TAS] [GO:0048477 "oogenesis"
            evidence=IGI;TAS] [GO:0009949 "polarity specification of
            anterior/posterior axis" evidence=IMP] [GO:0030717 "karyosome
            formation" evidence=IMP] [GO:0009951 "polarity specification of
            dorsal/ventral axis" evidence=IMP] [GO:0006417 "regulation of
            translation" evidence=TAS] [GO:0030532 "small nuclear
            ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5 snRNP"
            evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
            [GO:0009994 "oocyte differentiation" evidence=NAS] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0016321 "female meiosis chromosome segregation"
            evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0009949 GO:GO:0007294 EMBL:AE014296 GO:GO:0006417
            GO:GO:0006200 GO:GO:0003676 GO:GO:0004386 GO:GO:0008298
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
            GeneTree:ENSGT00640000091272 GO:GO:0030717 GO:GO:0016321
            GO:GO:0008026 OMA:SRPLENC GO:GO:0009951 EMBL:BT011090
            RefSeq:NP_648178.1 UniGene:Dm.15493 SMR:Q9VSE2 IntAct:Q9VSE2
            STRING:Q9VSE2 EnsemblMetazoa:FBtr0076689 GeneID:38905
            KEGG:dme:Dmel_CG7972 UCSC:CG7972-RA CTD:38905 FlyBase:FBgn0002899
            InParanoid:Q9VSE2 OrthoDB:EOG4MKKXB GenomeRNAi:38905 NextBio:810944
            Uniprot:Q9VSE2
        Length = 1051

 Score = 178 (67.7 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
 Identities = 84/329 (25%), Positives = 154/329 (46%)

Query:   490 VREPAI-KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
             +  P + K L  G+A HH+G     + +IE  ++ G+V V+  T TLAAG+N+PA+  ++
Sbjct:   558 ILSPVLAKTLPYGIAYHHSGLTTDERKYIETAYRFGVVTVICCTSTLAAGVNLPAKRVII 617

Query:   549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
                 +    G+  LT  +  QM GRAGR G+   G  +L+    +      ++LF+ ++ 
Sbjct:   618 ----RAPYVGQEFLTLCKYKQMVGRAGRAGLGEAGESILIAQSKDNLL-VGQMLFSPMDK 672

Query:   609 LVSQFTASYGMVL-NLLAGAKVMHLSNESDDMKAL--------QAGRSLEEA-----RKL 654
              +S    +  + L +L+     ++L+    D+  L        QA +SLE A      ++
Sbjct:   673 ALSSLDQNEAVGLQSLILSVVGLNLAECRRDLNRLVNSTLLSVQA-KSLEVAVNEIVLRI 731

Query:   655 VEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSE-ISDDAIDRKSRRLL-SEAAYKEMAN 712
             + + F N V   + LA      KI   +D++TS+ +S        RRLL  ++   ++ N
Sbjct:   732 LREMFKNKV---LQLAEPQAKSKINS-SDIITSQDVSQANRPAGDRRLLIGQSTPFKLTN 787

Query:   713 L-QEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPA- 770
             + +   KA   ++       ELK+ +  + IL ++   HL +L + +  +E  +   PA 
Sbjct:   788 IGRAAFKAGIDYKRANAIHKELKQ-AQQQLILTNYL--HLLYLVVCFNSNERGDELFPAD 844

Query:   771 --VYLGKFDSL--DSSKLKNMASINDSFA 795
               +  G + SL  DS  +       ++ A
Sbjct:   845 ASILFGVYTSLPLDSQAMFKQLGFTEAHA 873

 Score = 101 (40.6 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
 Identities = 42/202 (20%), Positives = 85/202 (42%)

Query:   167 SIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXX-NQRRIFYTTPLKALSNQKFREFRET 225
             ++ A  +  +++ + PTS GKTL+            +R + +  P  ++  +K       
Sbjct:   273 NLPAIRQRKNLIYALPTSGGKTLVAEILMLRELLCRERNVLFILPYVSIVQEKVSAMSPF 332

Query:   226 FGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSV--GMVSSESGLFDVD------VI 277
               D  +  +  +    +  +         R++   S+  G V  +S L DV       ++
Sbjct:   333 AID--LDFIVEEYTAGK-GKCPPQPRRKRRSLFIASIEKGAVLMDS-LIDVQRPHEIGLV 388

Query:   278 VLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
             V+DE+H + +  RG   E     +++    +QI+ +SAT+ N  E++ ++       ++ 
Sbjct:   389 VVDELHLIGEKGRGATLEAFLTKVMFLNANIQIVGMSATIGNLSEISSFLN-----ADVY 443

Query:   335 TSSRRPVPLTWYFSTKTALLPL 356
             T   RPV L  Y      LL +
Sbjct:   444 TRGFRPVELKEYIKCGPDLLEI 465


>UNIPROTKB|F1RVE2 [details] [associations]
            symbol:HELQ "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
            OMA:SRPLENC EMBL:CU467102 EMBL:CU468150 Ensembl:ENSSSCT00000010115
            Uniprot:F1RVE2
        Length = 1103

 Score = 159 (61.0 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
 Identities = 67/254 (26%), Positives = 118/254 (46%)

Query:   447 FIFNRRGCDAAVQYLEDCNLLDE-----CEMSEVELALKRFRILYPDAVREPAIKGLLK- 500
             F   ++ C+   + +  C +L +      E  + EL LK  + +   +V  P +K  +  
Sbjct:   585 FCPTKKNCENVAEMI--CKILSKEYLKHREKEKHEL-LKNLKAISGGSVC-PVLKHTIPF 640

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
             GVA HH+G     +  +EE    G++ ++  T TLAAG+N+PA+  +L    +     + 
Sbjct:   641 GVAYHHSGLTNDERKLLEEAHSAGVLCLLTCTSTLAAGVNLPAQRVIL----RAPYVAKE 696

Query:   561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP----LVSQFTAS 616
              L  N+  QM GRAGR GID+ G  +L+    +  ++  +L+   +E     LV +FT  
Sbjct:   697 FLKRNQYKQMIGRAGRAGIDSVGESILIFQEKD-KQQVLELISRPLENCYSRLVQEFTKG 755

Query:   617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV--EQSFGNYVGSNVMLAAKDE 674
                +   L G K+   +    D+    +G      +K++  E+S       ++    +  
Sbjct:   756 IQTLFLSLIGLKI---ATTLGDIYHFMSGTFFGVQQKILLKEKSLWEITVESLRYLTEKG 812

Query:   675 LCKIQKETDVLTSE 688
             L  +QK+T VL SE
Sbjct:   813 L--LQKDT-VLGSE 823

 Score = 120 (47.3 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
 Identities = 55/210 (26%), Positives = 95/210 (45%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXXXNQRR-IFYTTPLKALSNQKFREFRETFGDNNVGLL 234
             +++ S PTS GKTL+           +R+      P  A+  +K      +FG   +G  
Sbjct:   356 NLIYSLPTSGGKTLVAEILMLQELLCRRKDALMILPYVAIVQEKIAGL-SSFGIE-LGFF 413

Query:   235 TGDSAINREAQILIMTTEILRNMLYQSV-----GMVSS--ESG-LFDVDVIVLDEVHYLS 286
               + A ++     I   E  +  LY +       +V+S  E+G +  + ++V+DE+H + 
Sbjct:   414 VEEYAGSKGKFPPIKRRE--KKSLYIATIEKGHSLVNSLIETGRIGGLGLVVVDELHMIG 471

Query:   287 DISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPL 343
             + SRG   E     I+Y  K  QI+ +SAT+ N ++L  ++     + E  +S  RPV L
Sbjct:   472 EGSRGATLEMTLAKILYTSKTTQIVGMSATLNNVEDLQAFL-----RAEYYSSWFRPVEL 526

Query:   344 TWYFSTKTALLPLLDEKGKH-MNRKLSLNY 372
               Y      +  + D K ++ M     LNY
Sbjct:   527 KEYLKINDTIYEV-DSKAENGMTFSRLLNY 555


>FB|FBgn0002905 [details] [associations]
            symbol:mus308 "mutagen-sensitive 308" species:7227
            "Drosophila melanogaster" [GO:0004386 "helicase activity"
            evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
            evidence=ISS;NAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0006289 "nucleotide-excision repair" evidence=IMP] [GO:0006303
            "double-strand break repair via nonhomologous end joining"
            evidence=IMP] InterPro:IPR001098 InterPro:IPR001650
            InterPro:IPR002298 InterPro:IPR003583 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
            PROSITE:PS51194 SMART:SM00278 SMART:SM00482 SMART:SM00490
            EMBL:AE014297 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006200 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
            GO:GO:0006303 GO:GO:0006289 GO:GO:0008026 GO:GO:0003887 KO:K02349
            OMA:EASIPEI EMBL:L76559 EMBL:BT044169 PIR:T13858 RefSeq:NP_524333.1
            UniGene:Dm.23677 HSSP:P00582 SMR:O18475 STRING:O18475
            EnsemblMetazoa:FBtr0082662 GeneID:41571 KEGG:dme:Dmel_CG6019
            UCSC:CG6019-RA CTD:41571 FlyBase:FBgn0002905 InParanoid:O18475
            OrthoDB:EOG4FJ6QM GenomeRNAi:41571 NextBio:824448 Uniprot:O18475
        Length = 2059

 Score = 154 (59.3 bits), Expect = 3.2e-14, Sum P(4) = 3.2e-14
 Identities = 54/196 (27%), Positives = 89/196 (45%)

Query:   496 KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
             K +    A HHAG     +  IE  F+ G +KV+ AT TL++G+N+PAR  ++ S     
Sbjct:   538 KAITYACAFHHAGLTTEERDIIEASFKAGALKVLVATSTLSSGVNLPARRVLIRS----P 593

Query:   556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS--QF 613
               G  Q++S    QM GRAGR G D  G  +L+      A     L+ + ++P+ S    
Sbjct:   594 LFGGKQMSSLTYRQMIGRAGRMGKDTLGESILICNEIN-ARMGRDLVVSELQPITSCLDM 652

Query:   614 TASYGMVLNLLA--GAKVMHLSNESD---DMKALQAGRSLEEARKLV-EQSFGNYVGSNV 667
               S  +   LL    + V +   + D   +   L A ++     K   E+S  NY+   +
Sbjct:   653 DGSTHLKRALLEVISSGVANTKEDIDFFVNCTLLSAQKAFHAKEKPPDEESDANYINDAL 712

Query:   668 MLAAKDELCKIQKETD 683
                 + E  ++Q+  +
Sbjct:   713 DFLVEYEFVRLQRNEE 728

 Score = 127 (49.8 bits), Expect = 3.2e-14, Sum P(4) = 3.2e-14
 Identities = 47/205 (22%), Positives = 92/205 (44%)

Query:   152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQ-RRIFYTTP 210
             +  ++D++++   +  +       ++V SAPTS+GKTL+           + +++    P
Sbjct:   229 VVDMFDWQVECLSKPRL--LFEHCNLVYSAPTSAGKTLVSEILMLKTVLERGKKVLLILP 286

Query:   211 LKALSNQKFREFRETF---GDNNVGLLTGDSAIN--REAQILIMTTEILRNMLYQSVGMV 265
               ++  +K    ++     G    G   G +         + I T E   ++    V  +
Sbjct:   287 FISVVREKMFYMQDLLTPAGYRVEGFYGGYTPPGGFESLHVAICTIEKANSI----VNKL 342

Query:   266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEI---IIYCPK----EVQIICLSATVANAD 318
               +  L  + ++V+DEVH +SD  RG + E +   I+Y  +    ++Q+I +SAT+ N  
Sbjct:   343 MEQGKLETIGMVVVDEVHLISDKGRGYILELLLAKILYMSRRNGLQIQVITMSATLENVQ 402

Query:   319 ELAGWIGQIHGKTELITSSRRPVPL 343
              L  W+       EL  ++ RPV L
Sbjct:   403 LLQSWLD-----AELYITNYRPVAL 422

 Score = 53 (23.7 bits), Expect = 3.2e-14, Sum P(4) = 3.2e-14
 Identities = 16/72 (22%), Positives = 32/72 (44%)

Query:   752 PF-LCLQYKDSEGVEHSVPAVYLGKFDSLDS--SKLKNMASINDSFALNRLAQSNGDDYD 808
             P+ +C Q +D + +      +Y+  ++ L S   K+  +  + D+F    L      DY 
Sbjct:   781 PYSVCYQLQDIDWL------LYVHMWEKLSSPMKKVGELVGVRDAFLYKALRGQTKLDYK 834

Query:   809 TQDVKPSYYVAL 820
                +   +Y+AL
Sbjct:   835 QMQIHKRFYIAL 846

 Score = 50 (22.7 bits), Expect = 3.2e-14, Sum P(4) = 3.2e-14
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query:  1100 SQFSGMVEAWASGLTWREM-MMXXXXXXXXXXXXXXXTIDLLAQIPKLPDVDQRLQKNAV 1158
             S F+G+V A+ + L W  + ++                IDL+    ++PD+ Q+  +   
Sbjct:   879 STFAGIVTAFCNSLQWSTLALIVSQFKDRLFFGIHRDLIDLM----RIPDLSQKRARALF 934

Query:  1159 DA 1160
             DA
Sbjct:   935 DA 936

 Score = 43 (20.2 bits), Expect = 1.6e-13, Sum P(4) = 1.6e-13
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query:   911 MSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEE---KIKRLKARSK 967
             +S ++H A +  ++  T+V       AR++GF E   I    ++ E     ++ LK +++
Sbjct:  1907 ISDQFHQAYKGIRDYTTRVVNF----ARSKGFVE--TITGRRRYLENINSDVEHLKNQAE 1960

Query:   968 R 968
             R
Sbjct:  1961 R 1961

 Score = 41 (19.5 bits), Expect = 2.5e-13, Sum P(4) = 2.5e-13
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query:   916 HDAVENYKEQRTKVARLKKKIARTEGFK 943
             HD  E  K  R  + +LK+  A+ E  K
Sbjct:  1538 HDGKEQLKMLRKAIPQLKRISAKLEDAK 1565

 Score = 39 (18.8 bits), Expect = 1.4e-05, Sum P(4) = 1.4e-05
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query:   168 IEAFLRGSSVVVSAPT 183
             IE  L G SV+V  P+
Sbjct:   465 IETLLEGCSVIVFCPS 480


>UNIPROTKB|Q8TDG4 [details] [associations]
            symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
            sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 EMBL:AF436845 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 eggNOG:COG1204 GO:GO:0008026 EMBL:AK128665
            EMBL:AC096768 EMBL:BC015428 EMBL:BC095473 EMBL:AL512702
            IPI:IPI00152527 IPI:IPI00647582 IPI:IPI00807650 IPI:IPI00889496
            RefSeq:NP_598375.2 UniGene:Hs.480101 ProteinModelPortal:Q8TDG4
            SMR:Q8TDG4 IntAct:Q8TDG4 STRING:Q8TDG4 PhosphoSite:Q8TDG4
            DMDM:296434521 PaxDb:Q8TDG4 PRIDE:Q8TDG4 DNASU:113510
            Ensembl:ENST00000295488 GeneID:113510 KEGG:hsa:113510
            UCSC:uc003hom.3 UCSC:uc003hoo.1 UCSC:uc003hop.1 CTD:113510
            GeneCards:GC04M084328 HGNC:HGNC:18536 HPA:HPA036853 MIM:606769
            neXtProt:NX_Q8TDG4 PharmGKB:PA164720529 InParanoid:Q8TDG4
            OMA:SRPLENC OrthoDB:EOG4THVSJ PhylomeDB:Q8TDG4 GenomeRNAi:113510
            NextBio:78853 ArrayExpress:Q8TDG4 Bgee:Q8TDG4 Genevestigator:Q8TDG4
            Uniprot:Q8TDG4
        Length = 1101

 Score = 161 (61.7 bits), Expect = 4.9e-14, Sum P(3) = 4.9e-14
 Identities = 57/203 (28%), Positives = 95/203 (46%)

Query:   493 PAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
             P +K  +  GVA HH+G     +  +EE +  G++ +   T TLAAG+N+PAR  +L   
Sbjct:   630 PVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVIL--- 686

Query:   552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP--- 608
              +     +  L  N+  QM GRAGR GID  G  +L+    +  ++  +L+   +E    
Sbjct:   687 -RAPYVAKEFLKRNQYKQMIGRAGRAGIDTIGESILILQEKD-KQQVLELITKPLENCYS 744

Query:   609 -LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV--EQSFGNYVGS 665
              LV +FT     +   L G K+   +   DD+     G      +K++  E+S       
Sbjct:   745 HLVQEFTKGIQTLFLSLIGLKI---ATNLDDIYHFMNGTFFGVQQKVLLKEKSLWEITVE 801

Query:   666 NVMLAAKDELCKIQKETDVLTSE 688
             ++    +  L  +QK+T +  SE
Sbjct:   802 SLRYLTEKGL--LQKDT-IYKSE 821

 Score = 127 (49.8 bits), Expect = 4.9e-14, Sum P(3) = 4.9e-14
 Identities = 57/210 (27%), Positives = 94/210 (44%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXXXNQRR-IFYTTPLKALSNQKFREFRETFGDNNVGLL 234
             +++ S PTS GKTL+            R+ +    P  A+  +K      +FG   +G  
Sbjct:   354 NLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGL-SSFGIE-LGFF 411

Query:   235 TGDSAINREAQILIMTTEILRNMLYQSV-----GMVSS--ESGLFD-VDVIVLDEVHYLS 286
               + A ++       T    +  LY +       +V+S  E+G  D + ++V+DE+H + 
Sbjct:   412 VEEYAGSKGR--FPPTKRREKKSLYIATIEKGHSLVNSLIETGRIDSLGLVVVDELHMIG 469

Query:   287 DISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPL 343
             + SRG   E     I+Y  K  QII +SAT+ N ++L  ++     + E  TS  RPV L
Sbjct:   470 EGSRGATLEMTLAKILYTSKTTQIIGMSATLNNVEDLQKFL-----QAEYYTSQFRPVEL 524

Query:   344 TWYFSTKTALLPLLDEKGKH-MNRKLSLNY 372
               Y      +  + D K ++ M     LNY
Sbjct:   525 KEYLKINDTIYEV-DSKAENGMTFSRLLNY 553

 Score = 37 (18.1 bits), Expect = 4.9e-14, Sum P(3) = 4.9e-14
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query:   969 LTKRIEQIEPSGWKEFLRISNVIHET--RALD 998
             L  R +Q+  +G+K  + ++N   E   R +D
Sbjct:  1020 LEGRAKQLYSAGYKSLMHLANANPEVLVRTID 1051


>UNIPROTKB|F1RIW4 [details] [associations]
            symbol:DDX60 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:1900246 "positive regulation of RIG-I signaling
            pathway" evidence=IEA] [GO:1900245 "positive regulation of MDA-5
            signaling pathway" evidence=IEA] [GO:0051607 "defense response to
            virus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0003725
            "double-stranded RNA binding" evidence=IEA] [GO:0003690
            "double-stranded DNA binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005737 GO:GO:0003727 GO:GO:0051607
            GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001 PROSITE:PS51192
            GO:GO:0008026 OMA:QDCTYAD GO:GO:1900245 GO:GO:1900246
            GeneTree:ENSGT00690000102154 EMBL:AEMK01191618 EMBL:CU469408
            Ensembl:ENSSSCT00000010657 Uniprot:F1RIW4
        Length = 1705

 Score = 194 (73.4 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
 Identities = 97/340 (28%), Positives = 149/340 (43%)

Query:   319 ELAGWI--GQIHGKTELITSSRRPVPLTWYFSTKTA-LLPLLDEKGKHMNRKLSLNYL-Q 374
             EL  W+  G +  +  ++    RP  +    S   A + PLL EK K M +  +L +L +
Sbjct:  1072 ELTDWVKSGCVK-QARMVLKHLRPGSVI--SSENMADMFPLLVEKLKQMEKLPALFFLFK 1128

Query:   375 LSTSE-----VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV--P 427
             L   E     VK + +   +R+   K AD  ++++     + + S      I    +  P
Sbjct:  1129 LGAVEERARSVKTFLEKKQQRKRPPK-ADKEAHDMENKLRKVRKSIEKQKTIDEKSLKKP 1187

Query:   428 QVID-TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILY 486
             + +D +L H    D L  +         +  ++  +DC   D+  +    L     R+  
Sbjct:  1188 RNMDQSLIHEAEHDNLLKV--------LEKNLEIPQDCTYADQKALDAQTLQTVFDRV-- 1237

Query:   487 PDAVREPA-IKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 544
                 R+ A +K L  +GV  HH+      K  +E LF++G ++VV AT TLA GINMP +
Sbjct:  1238 -KLTRKGAELKALAARGVGYHHSSLNFKEKQLVEILFRKGFIRVVTATGTLALGINMPCK 1296

Query:   545 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 604
             + V        A   I L +    QM+GRAGRRG D  G V     P    E   KL+ +
Sbjct:  1297 SVVF-------AQNSIYLDALNYRQMSGRAGRRGQDLLGDVYFFDIPLPKIE---KLIKS 1346

Query:   605 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQA 644
              V  L  QF  S  +VL L      M L+++ DD    QA
Sbjct:  1347 NVPQLRGQFPLSISLVLRL------MLLASKGDDPGDAQA 1380

 Score = 86 (35.3 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
 Identities = 29/113 (25%), Positives = 50/113 (44%)

Query:   222 FRETFGDNNV--GLLTGD---SAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276
             FR+   D     G+ T D    A+N  +QILI        +L         ++ +  +  
Sbjct:   826 FRKNLPDGEALCGVFTRDYRHDALN--SQILITVPACFEILLLAP----HRQAWVKRIRY 879

Query:   277 IVLDEVHYLSDISRGTVWEEIIIY--CPKEVQIICLSATVANADELAGWIGQI 327
             ++ DEVH L       +WE +++   CP     + LSAT++N + L  W+  +
Sbjct:   880 VIFDEVHCLGGEIGAEIWEHLLVMIRCP----FLALSATISNPEHLTEWLQSV 928

 Score = 38 (18.4 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query:   129 WQRVEKLC-NEVKEFGNEMI 147
             W R ++LC  E   F N+++
Sbjct:  1037 WPRAQELCPEEFIHFKNKIV 1056


>TAIR|locus:2059969 [details] [associations]
            symbol:AT2G42270 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
            SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0003676 EMBL:AC002561 GO:GO:0030529
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
            Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
            HOGENOM:HOG000157749 UniGene:At.12448 UniGene:At.43726 KO:K12854
            OMA:RDTHESS GO:GO:0008026 IPI:IPI00539463 PIR:T00936
            RefSeq:NP_181756.1 ProteinModelPortal:O48534 SMR:O48534
            STRING:O48534 PaxDb:O48534 PRIDE:O48534 EnsemblPlants:AT2G42270.1
            GeneID:818828 KEGG:ath:AT2G42270 TAIR:At2g42270 InParanoid:O48534
            PhylomeDB:O48534 ProtClustDB:CLSN2679454 ArrayExpress:O48534
            Genevestigator:O48534 Uniprot:O48534
        Length = 2172

 Score = 155 (59.6 bits), Expect = 6.2e-14, Sum P(4) = 6.2e-14
 Identities = 42/131 (32%), Positives = 69/131 (52%)

Query:   495 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
             +K LL  G A HHAG     +  +E  F+ G ++V+ +T TLA G+N+PA T ++     
Sbjct:   799 LKELLPYGFAIHHAGLTRTDREIVENQFRWGNLQVLISTATLAWGVNLPAHTVIIKGTQV 858

Query:   554 RTAS-GR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
                  G  ++L+  ++ QM GRAGR   D +G  +++ T Y   +   +L+   + P+ S
Sbjct:   859 YNPERGEWMELSPLDVMQMIGRAGRPQYDQQGEGIII-TGYSKLQYYLRLMNEQL-PIES 916

Query:   612 QFTASYGMVLN 622
             QF +     LN
Sbjct:   917 QFISKLADQLN 927

 Score = 152 (58.6 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
 Identities = 54/187 (28%), Positives = 90/187 (48%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXXX----NQRRIFYTTPLKALSNQKFREFRETFGDNNV 231
             +VVV+APT SGKT+               +  R+ Y  PL+A++ ++FR++ + FG   +
Sbjct:  1369 NVVVAAPTGSGKTICAEFAILRNHLEGPDSAMRVVYIAPLEAIAKEQFRDWEKKFG-KGL 1427

Query:   232 GL----LTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283
             GL    LTG++ ++     + QI+I T E    +  +          +  V + ++DE+H
Sbjct:  1428 GLRVVELTGETLLDLKLLEKGQIIISTPEKWDALSRRW----KQRKYIQQVSLFIVDELH 1483

Query:   284 YLSDISRGTVWEEIII---YCPKEV----QIICLSATVANADELAGWIGQIHGKTELITS 336
              +     G V E I+    Y   +V    +I+ LS ++ANA +L  WIG           
Sbjct:  1484 LIGG-QGGQVLEVIVSRMRYISSQVGNKIRIVALSTSLANAKDLGEWIGASSCGVFNFPP 1542

Query:   337 SRRPVPL 343
             + RPVPL
Sbjct:  1543 NVRPVPL 1549

 Score = 125 (49.1 bits), Expect = 6.2e-14, Sum P(4) = 6.2e-14
 Identities = 46/155 (29%), Positives = 79/155 (50%)

Query:   204 RIFYTTPLKALSNQKFREFRETFGDNNVGL--LTGDSAIN----REAQILIMTTEILRNM 257
             +I Y  P+KAL  +      +   D  V +  L+GD ++     +E QI++ T E    +
Sbjct:   562 KIVYVAPMKALVAEVVDSLSQRLKDFGVTVKELSGDQSLTGQEIKETQIIVTTPEKWDII 621

Query:   258 LYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII------IYCPKE-VQIICL 310
               +S     ++     V ++++DE+H L D +RG V E I+      I   KE ++++ L
Sbjct:   622 TRKSGDRTYTQL----VRLLIIDEIHLLDD-NRGPVLESIVARTLRQIESTKEHIRLVGL 676

Query:   311 SATVANADELAGWIGQIHGKTELITSSR--RPVPL 343
             SAT+ N D++A ++ ++  K  L    R  RPVPL
Sbjct:   677 SATLPNCDDVASFL-RVDLKNGLFIFDRSYRPVPL 710

 Score = 83 (34.3 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
 Identities = 37/157 (23%), Positives = 66/157 (42%)

Query:   438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVR--EPAI 495
             +++  PAI F+  R+        L   + +D   M   +  L     L P  ++  E  +
Sbjct:  1580 AKNKKPAIVFVPTRKHVRLTAVDLIAYSHMDN--MKSPDFLLGNLEELEPFLIQICEETL 1637

Query:   496 KGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554
             K  L+ G+   H G   + +  + +LF+ G ++V   + +L  G  + A   V+  +   
Sbjct:  1638 KETLRHGIGYLHEGLSNLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLKAHLVVV--MGTH 1695

Query:   555 TASGRIQLTSN----ELFQMAGRAGRRGIDNRGHVVL 587
                GR    S+     L QM GR  R  +D+ G  V+
Sbjct:  1696 FYDGRENSHSDYPISNLLQMMGRGSRPLLDDAGKCVI 1732

 Score = 82 (33.9 bits), Expect = 1.2e-09, Sum P(4) = 1.2e-09
 Identities = 35/154 (22%), Positives = 70/154 (45%)

Query:   170 AFLRGSSVVVSAPTSSGKTLIXXXXXXXXXX-NQR----------RIFYTTPLKALSNQK 218
             A  +  ++++ APT +GKT +           N            +I Y  P+KAL  + 
Sbjct:   517 ALFKADNILLCAPTGAGKTNVAVLTILHQLGLNMNPGGTFNHGNYKIVYVAPMKALVAEV 576

Query:   219 FREFRETFGDNNVGL--LTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG--LFD- 273
                  +   D  V +  L+GD ++  +    I  T+I+     +   +++ +SG   +  
Sbjct:   577 VDSLSQRLKDFGVTVKELSGDQSLTGQE---IKETQIIVTTP-EKWDIITRKSGDRTYTQ 632

Query:   274 -VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 306
              V ++++DE+H L D +RG V E I+    ++++
Sbjct:   633 LVRLLIIDEIHLLDD-NRGPVLESIVARTLRQIE 665

 Score = 55 (24.4 bits), Expect = 6.2e-14, Sum P(4) = 6.2e-14
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query:   847 LAQGDALPRETMSLLLDKGEMLWEK---LADSEFGGLWC 882
             L Q   +P+E + + L+K +++WE+   L+  E G L C
Sbjct:  1154 LWQFPGIPKEIL-MKLEKNDLVWERYYDLSSQELGELIC 1191

 Score = 47 (21.6 bits), Expect = 6.2e-14, Sum P(4) = 6.2e-14
 Identities = 17/69 (24%), Positives = 32/69 (46%)

Query:  1020 LWLAMV-LRNKILLDLKPAQLAAVCASLVSEGIKV-RLWKNNSSIYEPSTTVINVINVLD 1077
             L L +V L  + LLDLK  +   +  S   +   + R WK    I + S  +++ ++++ 
Sbjct:  1427 LGLRVVELTGETLLDLKLLEKGQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIG 1486

Query:  1078 EHRSSFLEL 1086
                   LE+
Sbjct:  1487 GQGGQVLEV 1495

 Score = 39 (18.8 bits), Expect = 1.8e-05, Sum P(4) = 1.8e-05
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query:   349 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 384
             T  A+L +L + G +MN   + N+       V P K
Sbjct:   535 TNVAVLTILHQLGLNMNPGGTFNHGNYKIVYVAPMK 570


>UNIPROTKB|E2RA34 [details] [associations]
            symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
            SMART:SM00973 GO:GO:0008026 KO:K15271 CTD:164045
            GeneTree:ENSGT00550000074822 EMBL:AAEX03004823 RefSeq:XP_537081.3
            Ensembl:ENSCAFT00000032148 GeneID:479956 KEGG:cfa:479956
            Uniprot:E2RA34
        Length = 1437

 Score = 159 (61.0 bits), Expect = 9.9e-14, Sum P(3) = 9.9e-14
 Identities = 55/199 (27%), Positives = 90/199 (45%)

Query:   395 KHADMNSNNIVTSF--GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
             KH  +    +V  F  G +Q ++   +     ++  VI T       D  P + F   R+
Sbjct:   486 KHRPVKLQKVVLGFPCGSNQ-TEFKFDLTLNYKIAGVIRTY-----SDQKPTLVFCATRK 539

Query:   453 GCDAAVQYL-EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCL 510
             G   A   L +D   +   E  +    L++    Y  ++R+  ++ +L  GVA HHAG  
Sbjct:   540 GVQQAASVLVKDAKFIMAVEQKQ---RLQK----YAYSIRDSKLRDILIHGVAYHHAGME 592

Query:   511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-LTSNELFQ 569
                +  +E  F  G + V+F T TLA G+N+PA   V+ S +   A G  +  +  ++ Q
Sbjct:   593 LSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKS-TMHYAGGMFEEYSETDILQ 651

Query:   570 MAGRAGRRGIDNRGHVVLV 588
             M GRAGR   D     V++
Sbjct:   652 MIGRAGRPQFDTTATAVIM 670

 Score = 124 (48.7 bits), Expect = 9.9e-14, Sum P(3) = 9.9e-14
 Identities = 44/144 (30%), Positives = 73/144 (50%)

Query:   178 VVSAPTSSGKTLIXXXXXXXXXX------NQRRIFYTTPLKALSNQKFREFRETFGDNNV 231
             V+ APT SGKT++                +  +I Y  P+KAL +Q+F +++E FG   +
Sbjct:   302 VICAPTGSGKTVVFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKEKFGP--I 359

Query:   232 GL----LTGDSAINREAQI----LIMTTEILRNMLYQSVGMVSSESGLFD-VDVIVLDEV 282
             GL    LTGD+ ++   +I    +IMTT       + S+     ++ L   V + ++DEV
Sbjct:   360 GLNCKELTGDTVMDDLFEIQHAHIIMTTP----EKWDSMTRKWRDNSLVQLVRLFLIDEV 415

Query:   283 HYLSDISRGTVWEEIIIYCPKEVQ 306
             H + D +RG   E +++   K VQ
Sbjct:   416 HVVKDENRGPTLE-VVVSRMKTVQ 438

 Score = 76 (31.8 bits), Expect = 7.1e-09, Sum P(3) = 7.1e-09
 Identities = 34/131 (25%), Positives = 62/131 (47%)

Query:   234 LTGDSAINREAQI----LIMTTEILRNMLYQSVGMVSSESGLFD-VDVIVLDEVHYLSDI 288
             LTGD+ ++   +I    +IMTT       + S+     ++ L   V + ++DEVH + D 
Sbjct:   366 LTGDTVMDDLFEIQHAHIIMTTP----EKWDSMTRKWRDNSLVQLVRLFLIDEVHVVKDE 421

Query:   289 SRGTVWEEII--------IYCPKE------VQIICLSATVANADELAGWI--GQIHGKTE 332
             +RG   E ++        +  P E      ++ + +SAT+ NA+++A W+  G+      
Sbjct:   422 NRGPTLEVVVSRMKTVQSLSPPSENSTVIPMRFVAVSATIPNAEDIAEWLSDGERPAVCL 481

Query:   333 LITSSRRPVPL 343
              +    RPV L
Sbjct:   482 KMDEKHRPVKL 492

 Score = 43 (20.2 bits), Expect = 9.9e-14, Sum P(3) = 9.9e-14
 Identities = 17/58 (29%), Positives = 26/58 (44%)

Query:     7 LSGSTTFPVFANTKPFSFHQFHTLSHTLGFCIPKPLLSSNSIQFQASYKSPKSFFPTE 64
             +SG+T    FA  K  S   F      +   I + + S++S   ++S  S K   PTE
Sbjct:   142 VSGNTKLVNFAEDKGESTSAFRKRLFKISDNIHEGVYSNDSTNLESSVGSVK-IVPTE 198


>UNIPROTKB|E2R5U9 [details] [associations]
            symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
            SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
            GeneTree:ENSGT00550000074822 EMBL:AAEX03004823
            Ensembl:ENSCAFT00000035369 Uniprot:E2R5U9
        Length = 1466

 Score = 159 (61.0 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
 Identities = 55/199 (27%), Positives = 90/199 (45%)

Query:   395 KHADMNSNNIVTSF--GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
             KH  +    +V  F  G +Q ++   +     ++  VI T       D  P + F   R+
Sbjct:   486 KHRPVKLQKVVLGFPCGSNQ-TEFKFDLTLNYKIAGVIRTY-----SDQKPTLVFCATRK 539

Query:   453 GCDAAVQYL-EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCL 510
             G   A   L +D   +   E  +    L++    Y  ++R+  ++ +L  GVA HHAG  
Sbjct:   540 GVQQAASVLVKDAKFIMAVEQKQ---RLQK----YAYSIRDSKLRDILIHGVAYHHAGME 592

Query:   511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-LTSNELFQ 569
                +  +E  F  G + V+F T TLA G+N+PA   V+ S +   A G  +  +  ++ Q
Sbjct:   593 LSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKS-TMHYAGGMFEEYSETDILQ 651

Query:   570 MAGRAGRRGIDNRGHVVLV 588
             M GRAGR   D     V++
Sbjct:   652 MIGRAGRPQFDTTATAVIM 670

 Score = 124 (48.7 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
 Identities = 44/144 (30%), Positives = 73/144 (50%)

Query:   178 VVSAPTSSGKTLIXXXXXXXXXX------NQRRIFYTTPLKALSNQKFREFRETFGDNNV 231
             V+ APT SGKT++                +  +I Y  P+KAL +Q+F +++E FG   +
Sbjct:   302 VICAPTGSGKTVVFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKEKFGP--I 359

Query:   232 GL----LTGDSAINREAQI----LIMTTEILRNMLYQSVGMVSSESGLFD-VDVIVLDEV 282
             GL    LTGD+ ++   +I    +IMTT       + S+     ++ L   V + ++DEV
Sbjct:   360 GLNCKELTGDTVMDDLFEIQHAHIIMTTP----EKWDSMTRKWRDNSLVQLVRLFLIDEV 415

Query:   283 HYLSDISRGTVWEEIIIYCPKEVQ 306
             H + D +RG   E +++   K VQ
Sbjct:   416 HVVKDENRGPTLE-VVVSRMKTVQ 438

 Score = 76 (31.8 bits), Expect = 7.6e-09, Sum P(3) = 7.6e-09
 Identities = 34/131 (25%), Positives = 62/131 (47%)

Query:   234 LTGDSAINREAQI----LIMTTEILRNMLYQSVGMVSSESGLFD-VDVIVLDEVHYLSDI 288
             LTGD+ ++   +I    +IMTT       + S+     ++ L   V + ++DEVH + D 
Sbjct:   366 LTGDTVMDDLFEIQHAHIIMTTP----EKWDSMTRKWRDNSLVQLVRLFLIDEVHVVKDE 421

Query:   289 SRGTVWEEII--------IYCPKE------VQIICLSATVANADELAGWI--GQIHGKTE 332
             +RG   E ++        +  P E      ++ + +SAT+ NA+++A W+  G+      
Sbjct:   422 NRGPTLEVVVSRMKTVQSLSPPSENSTVIPMRFVAVSATIPNAEDIAEWLSDGERPAVCL 481

Query:   333 LITSSRRPVPL 343
              +    RPV L
Sbjct:   482 KMDEKHRPVKL 492

 Score = 43 (20.2 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
 Identities = 17/58 (29%), Positives = 26/58 (44%)

Query:     7 LSGSTTFPVFANTKPFSFHQFHTLSHTLGFCIPKPLLSSNSIQFQASYKSPKSFFPTE 64
             +SG+T    FA  K  S   F      +   I + + S++S   ++S  S K   PTE
Sbjct:   142 VSGNTKLVNFAEDKGESTSAFRKRLFKISDNIHEGVYSNDSTNLESSVGSVK-IVPTE 198


>TAIR|locus:2125677 [details] [associations]
            symbol:AT4G32700 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0006260 "DNA replication"
            evidence=IEA;IGI] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IGI]
            [GO:0009640 "photomorphogenesis" evidence=IMP] [GO:0010468
            "regulation of gene expression" evidence=IGI] InterPro:IPR001098
            InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
            PROSITE:PS51194 SMART:SM00482 SMART:SM00490 GO:GO:0005524
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0006260
            GO:GO:0009640 GO:GO:0006310 GO:GO:0010468 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
            OMA:EASIPEI EMBL:AB192295 IPI:IPI00570534 RefSeq:NP_001078482.1
            UniGene:At.48069 ProteinModelPortal:Q588V7 SMR:Q588V7 STRING:Q588V7
            PRIDE:Q588V7 EnsemblPlants:AT4G32700.2 GeneID:829406
            KEGG:ath:AT4G32700 TAIR:At4g32700 HOGENOM:HOG000030860
            PhylomeDB:Q588V7 ProtClustDB:CLSN2698843 Genevestigator:Q588V7
            Uniprot:Q588V7
        Length = 2154

 Score = 205 (77.2 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
 Identities = 64/195 (32%), Positives = 100/195 (51%)

Query:   447 FIFNRRGCDAAVQYLEDC--NL---LD--ECEMSEVELALKRFRILYPDAVREPAIKGLL 499
             F  +R+GC++  +++     N+   +D    E  ++  A+   R   P  V +P ++  L
Sbjct:   775 FCSSRKGCESTARHISKLIKNVPVNVDGENSEFMDIRSAIDALR-RSPSGV-DPVLEETL 832

Query:   500 -KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
               GVA HHAG     +  +E  +++GLV+V+ AT TLAAG+N+PAR  +     ++   G
Sbjct:   833 PSGVAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNLPARRVIF----RQPMIG 888

Query:   559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY- 617
             R  +      QM+GRAGR GID +G  VL+  P E  +    LL     PL S  +    
Sbjct:   889 RDFIDGTRYKQMSGRAGRTGIDTKGDSVLICKPGE-LKRIMALLNETCPPLQSCLSEDKN 947

Query:   618 GM---VLNLLAGAKV 629
             GM   +L ++AG  V
Sbjct:   948 GMTHAILEVVAGGIV 962

 Score = 73 (30.8 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
 Identities = 27/150 (18%), Positives = 64/150 (42%)

Query:   152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRI-FYTTP 210
             ++ +Y ++++  Q   ++  L+  ++V  A TS+GK+ +             ++     P
Sbjct:   512 ISKLYPWQVECLQ---VDGVLQKRNLVYCASTSAGKSFVAEVLMLRRVIRTGKMALLVLP 568

Query:   211 LKALSNQKFREFR---ETFGDNNVGLL--TGDSAINREAQILIMTTEILRNMLYQSVGMV 265
               ++  +K        E  G +        G   + ++  + + T E   ++    +  +
Sbjct:   569 YVSICAEKAEHLEVLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSL----INRL 624

Query:   266 SSESGLFDVDVIVLDEVHYLSDISRGTVWE 295
               E  L ++ +IV+DE+H + D  RG + E
Sbjct:   625 LEEGRLSELGIIVIDELHMVGDQHRGYLLE 654

 Score = 61 (26.5 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query:   305 VQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTAL 353
             +QI+ +SAT+ N   +A W+     +TE      RPVPL  Y    + +
Sbjct:   690 LQIVGMSATMPNVGAVADWLQAALYQTEF-----RPVPLEEYIKVGSTI 733

 Score = 42 (19.8 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:   132 VEKLCNEVKEFGNEMI 147
             + +LCNEV + GN ++
Sbjct:   758 IVELCNEVVQEGNSVL 773

 Score = 38 (18.4 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query:  1148 DVDQRLQKNAVDASNVMDRPPIS 1170
             +V+ +L KN  D S+  DR  I+
Sbjct:  1868 EVEFKLDKNGRDVSSDADRYKIN 1890


>UNIPROTKB|F1SU44 [details] [associations]
            symbol:F1SU44 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
            GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
            Ensembl:ENSSSCT00000008903 OMA:NETIATY Uniprot:F1SU44
        Length = 1027

 Score = 163 (62.4 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
 Identities = 49/154 (31%), Positives = 82/154 (53%)

Query:   495 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
             +K LL  G A HHAG   + ++ +E+LF    ++V+ +T TLA G+N+PA T ++     
Sbjct:   774 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 833

Query:   554 RTAS-GR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
              +   GR  +L + ++ QM GRAGR   D +G  +L+ T +   +    LL   + P+ S
Sbjct:   834 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI-TSHGELQYYLSLLNQQL-PIES 891

Query:   612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAG 645
             Q  A    +LN    A+++ L N  +  + L +G
Sbjct:   892 QMVAKLPDMLN----AEIV-LGNVQNAKRGLGSG 920

 Score = 108 (43.1 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
 Identities = 57/208 (27%), Positives = 97/208 (46%)

Query:   162 KFQRSSIEAFLRGSSVVVSAPTSSGKT---LIXXXXXXXXXXNQR--------RIFYTTP 210
             K  R+++E      ++++ APT +GKT   L+          N          +I Y  P
Sbjct:   487 KLYRAALET---DENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 543

Query:   211 LKALSNQKFREFRE---TFGDNNVGLLTGDSAINRE----AQILIMTTEILRNMLYQSVG 263
             +++L  +    F +   T+G   V  LTGD  + +E     QI++ T E  +  +    G
Sbjct:   544 MRSLVQEMVGSFGKRLATYGIT-VAELTGDHQLCKEEISATQIIVCTPE--KWDIITRKG 600

Query:   264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC-------PKEVQIICLSATVAN 316
                + + L  V +I+LDE+H L D  RG V E ++           ++V++I LSAT+ N
Sbjct:   601 GERTYTQL--VRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN 657

Query:   317 ADELAGWIGQIHGKTEL-ITSSRRPVPL 343
              +++A ++     K      +S RPVPL
Sbjct:   658 YEDVATFLRVDPAKGLFYFDNSFRPVPL 685

 Score = 62 (26.9 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
 Identities = 31/125 (24%), Positives = 48/125 (38%)

Query:   349 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS-RKHADMNSNNIVTS 407
             T  AL+ +L E GKH+N   ++N        + P +        S  K        +   
Sbjct:   510 TNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAEL 569

Query:   408 FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL 467
              G HQL K  I+A   +Q+  ++ T          P  W I  R+G +     L    +L
Sbjct:   570 TGDHQLCKEEISA---TQI--IVCT----------PEKWDIITRKGGERTYTQLVRLIIL 614

Query:   468 DECEM 472
             DE  +
Sbjct:   615 DEIHL 619


>UNIPROTKB|A2PYH4 [details] [associations]
            symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
            Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0008026 KO:K15271
            EMBL:AB204867 EMBL:AK094079 EMBL:BX323048 EMBL:AC098691
            IPI:IPI00374013 IPI:IPI00852603 RefSeq:NP_001017975.3
            UniGene:Hs.454818 ProteinModelPortal:A2PYH4 SMR:A2PYH4
            STRING:A2PYH4 PhosphoSite:A2PYH4 PaxDb:A2PYH4 PRIDE:A2PYH4
            Ensembl:ENST00000294696 Ensembl:ENST00000370425 GeneID:164045
            KEGG:hsa:164045 UCSC:uc001doa.4 CTD:164045 GeneCards:GC01M091726
            HGNC:HGNC:20193 HPA:HPA035557 neXtProt:NX_A2PYH4
            PharmGKB:PA142671690 HOGENOM:HOG000293238 HOVERGEN:HBG103774
            InParanoid:A2PYH4 OMA:EADEMKS OrthoDB:EOG44XJHC ChiTaRS:HFM1
            GenomeRNAi:164045 NextBio:88429 ArrayExpress:A2PYH4 Bgee:A2PYH4
            CleanEx:HS_HFM1 Genevestigator:A2PYH4 Uniprot:A2PYH4
        Length = 1435

 Score = 160 (61.4 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
 Identities = 47/152 (30%), Positives = 73/152 (48%)

Query:   440 DMLPAIWFIFNRRGCDAAVQYL-EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL 498
             D  P + F   R+G   A   L +D   +   E  +    L++    Y  +VR+  ++ +
Sbjct:   526 DQKPTLVFCATRKGVQQAASVLVKDAKFIMTVEQKQ---RLQK----YAYSVRDSKLRDI 578

Query:   499 LK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
             LK G A HHAG     +  +E  F  G + V+F T TLA G+N+PA   V+ S +   A 
Sbjct:   579 LKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKS-TMHYAG 637

Query:   558 GRIQ-LTSNELFQMAGRAGRRGIDNRGHVVLV 588
             G  +  +  ++ QM GRAGR   D     V++
Sbjct:   638 GLFEEYSETDILQMIGRAGRPQFDTTATAVIM 669

 Score = 127 (49.8 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
 Identities = 47/154 (30%), Positives = 77/154 (50%)

Query:   178 VVSAPTSSGKTLIXXXXXXXXXXN------QRRIFYTTPLKALSNQKFREFRETFGDNNV 231
             V+ APT SGKT++                   +I Y  P+KAL +Q+F +++E FG   +
Sbjct:   300 VICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGP--I 357

Query:   232 GL----LTGDSAINREAQI----LIMTTEILRNMLYQSVGMVSSESGLFD-VDVIVLDEV 282
             GL    LTGD+ ++   +I    +IMTT       + S+     ++ L   V + ++DEV
Sbjct:   358 GLNCKELTGDTVMDDLFEIQHAHIIMTTP----EKWDSMTRKWRDNSLVQLVRLFLIDEV 413

Query:   283 HYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316
             H + D +RG   E +++   K VQ +  S T+ N
Sbjct:   414 HIVKDENRGPTLE-VVVSRMKTVQSV--SQTLKN 444

 Score = 74 (31.1 bits), Expect = 3.5e-08, Sum P(3) = 3.5e-08
 Identities = 36/133 (27%), Positives = 62/133 (46%)

Query:   234 LTGDSAINREAQI----LIMTTEILRNMLYQSVGMVSSESGLFD-VDVIVLDEVHYLSDI 288
             LTGD+ ++   +I    +IMTT       + S+     ++ L   V + ++DEVH + D 
Sbjct:   364 LTGDTVMDDLFEIQHAHIIMTTP----EKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDE 419

Query:   289 SRGTVWEEIIIYCPKEVQ----------------IICLSATVANADELAGWI--GQIHGK 330
             +RG   E +++   K VQ                 + +SAT+ NA+++A W+  G+    
Sbjct:   420 NRGPTLE-VVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAV 478

Query:   331 TELITSSRRPVPL 343
                +  S RPV L
Sbjct:   479 CLKMDESHRPVKL 491

 Score = 37 (18.1 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query:   979 SGWKEFLRISNVIHETRALD 998
             +G KEFL I   I+E + L+
Sbjct:   814 AGCKEFLDIQLRINEKKTLN 833


>MGI|MGI:1925237 [details] [associations]
            symbol:Ascc3 "activating signal cointegrator 1 complex
            subunit 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006200
            "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006974 "response to DNA damage
            stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008283 "cell proliferation"
            evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
            InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
            SMART:SM00490 MGI:MGI:1925237 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
            GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529
            OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
            SMART:SM00611 SMART:SM00973 EMBL:AC137877 EMBL:AC153529
            EMBL:AC159114 EMBL:BC032189 EMBL:BC059917 EMBL:AK021027
            EMBL:AK052745 IPI:IPI00553687 RefSeq:NP_932124.2 UniGene:Mm.222497
            PRIDE:E9PZJ8 Ensembl:ENSMUST00000035606 GeneID:77987 KEGG:mmu:77987
            HOGENOM:HOG000157749 NextBio:347945 Bgee:E9PZJ8 Uniprot:E9PZJ8
        Length = 2198

 Score = 153 (58.9 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
 Identities = 44/135 (32%), Positives = 65/135 (48%)

Query:   491 REPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
             R   ++ L   G + HHAG L   ++ +E LF  G +KV+  T TLA G+N+PA   V+ 
Sbjct:   768 RNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIK 827

Query:   550 SLSKRTAS-GR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
                   A  G  + L   ++ Q+ GRAGR   D  G  +++ T ++       LL     
Sbjct:   828 GTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITT-HDKLSHYLSLL-TQQN 885

Query:   608 PLVSQFTASYGMVLN 622
             P+ SQF  S    LN
Sbjct:   886 PIESQFLESLADNLN 900

 Score = 141 (54.7 bits), Expect = 5.6e-11, Sum P(4) = 5.6e-11
 Identities = 35/102 (34%), Positives = 52/102 (50%)

Query:   490 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
             VR+  +K  L  G+  HHAG     +  +EELF    V+V+ AT TLA G+N PA   ++
Sbjct:  1604 VRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVII 1663

Query:   549 SSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
                       R  +     ++ QM GRAGR   D++G  V++
Sbjct:  1664 KGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVIL 1705

 Score = 134 (52.2 bits), Expect = 5.6e-11, Sum P(4) = 5.6e-11
 Identities = 54/185 (29%), Positives = 89/185 (48%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXXXNQ---RRIFYTTPLKALSNQKFREFR----ETFGD 228
             +V++ APT SGKT +          N+    +  Y  PLKAL  ++  +++    E  G 
Sbjct:  1345 NVLLGAPTGSGKT-VAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGK 1403

Query:   229 NNVGLLTGDSAINREAQI---LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285
               + L TGD   + ++     LI+TT    + + +S     + S +  V+++++DE+H L
Sbjct:  1404 KVIEL-TGDVTPDMKSIAKADLIVTTPEKWDGVSRSW---QNRSYVQQVNILIIDEIHLL 1459

Query:   286 SDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSR 338
              +  RG V E I+        +  K V+I+ LS  +ANA +LA W+            S 
Sbjct:  1460 GE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSV 1518

Query:   339 RPVPL 343
             RPVPL
Sbjct:  1519 RPVPL 1523

 Score = 114 (45.2 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
 Identities = 47/179 (26%), Positives = 84/179 (46%)

Query:   145 EMIDVDELASIYDFRIDKFQRSSIE-AFLRGSSVVVSAPTSSGKTLIXXXXXXXXXX--- 200
             ++ +V +LA     R+++ Q    E A+    ++++ APT +GKT I             
Sbjct:   463 DLDEVGQLAFKGMKRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTILHEIRQHF 522

Query:   201 -------NQRRIFYTTPLKALSNQKFREFRETFGDNNVGL--LTGDSAINRE----AQIL 247
                    N+ +I Y  P+KAL+ +    F +      + +  LTGD  +++      Q+L
Sbjct:   523 HQGVIKKNEFKIVYVAPMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKSEILRTQML 582

Query:   248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 306
             + T E    +  +SVG V+       V +++LDEVH L +  RG V E I+    ++V+
Sbjct:   583 VTTPEKWDVVTRKSVGDVALSQ---IVKLLILDEVHLLHE-DRGPVLESIVARTLRQVE 637

 Score = 62 (26.9 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query:  1014 IRGENELWLAMV-LRNKILLDLKPAQLAAVCASLVS--EGIKVRLWKNNSSIYEPSTTVI 1070
             IR E +L   ++ L   +  D+K    A +  +     +G+  R W+N S + + +  +I
Sbjct:  1395 IRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVS-RSWQNRSYVQQVNILII 1453

Query:  1071 NVINVLDEHRSSFLEL 1086
             + I++L E R   LE+
Sbjct:  1454 DEIHLLGEERGPVLEV 1469

 Score = 41 (19.5 bits), Expect = 5.6e-11, Sum P(4) = 5.6e-11
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query:    16 FANTKPFSFHQFHTLSHT 33
             F++  P     FHTL HT
Sbjct:  1325 FSHFNPVQTQIFHTLYHT 1342

 Score = 38 (18.4 bits), Expect = 5.6e-11, Sum P(3) = 5.6e-11
 Identities = 32/145 (22%), Positives = 57/145 (39%)

Query:   950 DTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGE 1009
             D +K  EE+I+ L A    L    E   P G +      N++ +T  +       F L  
Sbjct:  1023 DQIKVREEEIEELDAL---LNNFCELSAPGGVENSYGKINILLQTY-ISRGEMDSFSLIS 1078

Query:  1010 TAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTV 1069
              +A +  +N   +   L    L    P     +    +S+ I  RLW   S + + S   
Sbjct:  1079 DSAYV-AQNAARIVRALFEIALRKRWPTMTYRLLN--LSKVIDKRLWGWASPLRQFSVLP 1135

Query:  1070 INVINVLDEHRSSFLELQEKHGVEI 1094
              +++  L+E   +  +L++    EI
Sbjct:  1136 PHILTRLEEKNLTVDKLKDMRKDEI 1160

 Score = 37 (18.1 bits), Expect = 5.6e-11, Sum P(4) = 5.6e-11
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query:  1044 ASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 1079
             A ++   IK   +K    +YEP     +++ VL +H
Sbjct:  1702 AVILVHDIKKDFYKK--FLYEPFPVESSLLGVLSDH 1735


>ASPGD|ASPL0000051297 [details] [associations]
            symbol:AN10194 species:162425 "Emericella nidulans"
            [GO:0000393 "spliceosomal conformational changes to generate
            catalytic conformation" evidence=IEA] [GO:0005681 "spliceosomal
            complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:BN001307
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
            GO:GO:0046540 GO:GO:0000388 GO:GO:0008026
            EnsemblFungi:CADANIAT00008099 OMA:AMNEACY Uniprot:C8VMF3
        Length = 2208

 Score = 163 (62.4 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
 Identities = 43/152 (28%), Positives = 77/152 (50%)

Query:   447 FIFNRRGCDAAVQYLEDCNLLDEC--EMSEVELALKRFRILYPDAVREPAIKGLLK-GVA 503
             F+ +R+      +YL D  L  E   ++ + + A +       ++V + A+K +L  G  
Sbjct:   779 FVHSRKETAKTAKYLRDKALEMETIGQILKSDSASRAILAEEAESVNDAALKDILPYGFG 838

Query:   504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-GR-IQ 561
              HHAG     +  ++ LF+ G ++V+  T TLA G+N+PA T ++      +   G  ++
Sbjct:   839 IHHAGLSLADRDSVQALFKDGSIQVLVCTATLAWGVNLPAHTVIIKGTQVYSPEKGSWVE 898

Query:   562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593
             L+  ++ QM GRAGR   D  G  +++ T  E
Sbjct:   899 LSPQDVLQMLGRAGRPQYDTYGEGIIITTQAE 930

 Score = 130 (50.8 bits), Expect = 5.4e-08, Sum P(3) = 5.4e-08
 Identities = 59/248 (23%), Positives = 104/248 (41%)

Query:   150 DELASIY-DFR-IDKFQRSSIEA-FLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQR--R 204
             DE   +Y D+   +K Q  + +  F    +V + APT SGKT+            +   R
Sbjct:  1372 DEYQRLYPDWEYFNKIQTQTFKTLFESDDNVFIGAPTGSGKTVCAELAILRHWAKEDSGR 1431

Query:   205 IFYTTPLKALSNQKFREFRETF----GDNNVGLLTGDSAINREAQILIMTTEILRNMLYQ 260
               Y  P + L + +  ++++      G  ++  LTG+  +  + +IL  +  +L      
Sbjct:  1432 AVYVAPFQELIDSRLEDWKKRLSGLAGGKSIAKLTGE--MTADLKILAGSDLVLATPTQW 1489

Query:   261 SV--GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII-----IYCPKE--VQIICLS 311
              V          +  V++ V DE+H L     G V+E ++     I    E  ++I+ LS
Sbjct:  1490 DVLSRQWQKRKNVRAVELFVADELHMLGGYG-GYVYEVVVSRMHSIALQTESGMRIVGLS 1548

Query:   312 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 371
               ++NA ++  WIG         +   RPVPL  +  + +  +P        M R   L+
Sbjct:  1549 VPLSNARDIGEWIGASKHTIYNFSPHARPVPLELHIQSFS--IPHFPSLMLAMARPAYLS 1606

Query:   372 YLQLSTSE 379
              LQLS  +
Sbjct:  1607 ILQLSADK 1614

 Score = 117 (46.2 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
 Identities = 47/168 (27%), Positives = 77/168 (45%)

Query:   204 RIFYTTPLKALSNQKFREFRETFGDNNVGL--LTGDSAINR----EAQILIMTTEILRNM 257
             +I Y +PLKAL  ++   F        + +  LTGD  + +    E Q+++ T E     
Sbjct:   590 KIVYISPLKALVQEQVENFGRRLAPYGIKVAELTGDRQLTKQQIAETQVIVTTPE----- 644

Query:   258 LYQSVGMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IIC 309
              +  +   +SE+     V +I++DE+H L D  RG V E I+    ++V+       I+ 
Sbjct:   645 KFDVITRKASETSYTKLVRLIIIDEIHLLHD-ERGPVIESIVSRTIRQVEQTGDAVRIVG 703

Query:   310 LSATVANADELAGWIGQIHGKTEL-ITSSRRPVPLTWYFSTKTALLPL 356
             LSAT+ N  ++A ++     K       S RP PL   F   T   P+
Sbjct:   704 LSATLPNYRDVASFLRVDPAKGLFHFDGSYRPCPLKQEFIGVTDKKPI 751

 Score = 106 (42.4 bits), Expect = 4.1e-12, Sum P(3) = 4.1e-12
 Identities = 40/152 (26%), Positives = 66/152 (43%)

Query:   170 AFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQR------------RIFYTTPLKALSNQ 217
             AF    +++V APT SGKT +            R            +I Y +PLKAL  +
Sbjct:   544 AFQDDGNMLVCAPTGSGKTNVAMLSILREVGKNRNSQTGEIMLDDFKIVYISPLKALVQE 603

Query:   218 KFREFRETFGDNNVGL--LTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD-V 274
             +   F        + +  LTGD  + ++ QI      +     +  +   +SE+     V
Sbjct:   604 QVENFGRRLAPYGIKVAELTGDRQLTKQ-QIAETQVIVTTPEKFDVITRKASETSYTKLV 662

Query:   275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 306
              +I++DE+H L D  RG V E I+    ++V+
Sbjct:   663 RLIIIDEIHLLHD-ERGPVIESIVSRTIRQVE 693

 Score = 105 (42.0 bits), Expect = 5.4e-08, Sum P(3) = 5.4e-08
 Identities = 37/151 (24%), Positives = 66/151 (43%)

Query:   443 PAIWFIFNRRGCDA-AVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKG 501
             PA+ F+ NR+   A A+  L  C++ D+ E   +   ++  + L          + L  G
Sbjct:  1615 PALIFVPNRKQTRATAIDLLTACSI-DDDEDRFLHADIEELQPLLGRVHERTLAESLSHG 1673

Query:   502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR-- 559
             +  +H       K  +  L+  G ++VV A+  +   +N+     V+  +  +   GR  
Sbjct:  1674 IGYYHEALSQTDKRIVSHLYNIGAIQVVIASRDVCWELNLTGHLVVV--MGTQFFEGREH 1731

Query:   560 --IQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
               I    +E+ QM G+A R G D  G  VL+
Sbjct:  1732 RYIDYPISEILQMFGKASRPGQDKVGRGVLM 1762

 Score = 47 (21.6 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
 Identities = 19/74 (25%), Positives = 32/74 (43%)

Query:   765 EHSVPAVYLGKFDSLDSSKLKNMASINDSFALNR-LAQSNGDDYDTQDVK--PSYYVALG 821
             E S  AVY+  F  L  S+L++        A  + +A+  G+   T D+K      + L 
Sbjct:  1427 EDSGRAVYVAPFQELIDSRLEDWKKRLSGLAGGKSIAKLTGEM--TADLKILAGSDLVLA 1484

Query:   822 SDNTWYTFTEKWIK 835
             +   W   + +W K
Sbjct:  1485 TPTQWDVLSRQWQK 1498

 Score = 41 (19.5 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query:   809 TQDVKPSYYVALGSDNTW 826
             T+ + P+Y+++L SD  W
Sbjct:  1316 TEPMPPNYFISLVSDR-W 1332

 Score = 41 (19.5 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
 Identities = 29/162 (17%), Positives = 66/162 (40%)

Query:   621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
             L  L+ AK++ L  E D +  L A  S+     +      +Y+     L +     K++ 
Sbjct:  1850 LKELSEAKIIDLDEEDDSVSPLNAA-SIGAYYNI------SYITMQTFLLSLSARTKLKG 1902

Query:   681 ETDVLTSEISDDAID-RKSRRLLSEAAYKEMANLQEELKAEK-RFRTELRRRMELKRFSA 738
               +++T+    +++  R+    +    Y  +     ++  +   F++ +  +    R   
Sbjct:  1903 ILEIVTAATEFESVQMRRHEEHILRRVYDRVPVKTSQVAFDSPHFKSFVLLQAHFSRMQL 1962

Query:   739 LKDILKDFE---NGHLPFL--CLQYKDSEGVEHSVPAVYLGK 775
               D+ KD E   +  L  L  C+    SEG  +++ A+ + +
Sbjct:  1963 PIDLAKDQEVIVSKALNLLSACVDILASEGHMNAMNAMEMSQ 2004

 Score = 39 (18.8 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query:   688 EISDDAIDRKSRRLLSEAAYKEMANLQEELKAE 720
             E+ D  ++   +RL   A  K +A L  E+ A+
Sbjct:  1440 ELIDSRLEDWKKRLSGLAGGKSIAKLTGEMTAD 1472

 Score = 38 (18.4 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query:   349 TKTALLPLLDEKGKHMN 365
             T  A+L +L E GK+ N
Sbjct:   562 TNVAMLSILREVGKNRN 578


>UNIPROTKB|F1MFR1 [details] [associations]
            symbol:HFM1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
            SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
            GeneTree:ENSGT00550000074822 EMBL:DAAA02007913 EMBL:DAAA02007914
            EMBL:DAAA02007915 EMBL:DAAA02007916 IPI:IPI00839892
            Ensembl:ENSBTAT00000027789 Uniprot:F1MFR1
        Length = 1438

 Score = 153 (58.9 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
 Identities = 46/151 (30%), Positives = 69/151 (45%)

Query:   440 DMLPAIWFIFNRRGCDAAVQYL-EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL 498
             D  P + F   R+G   A   L +D   +   E  +    L++      D+     I  L
Sbjct:   528 DQKPTLVFCATRKGVQQAASVLVKDAKFIMTVEQKQ---RLQKCAYSIKDSKLRVDI--L 582

Query:   499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
             + GVA HHAG     +  +E  F  G + V+F T TLA G+N+PA   V+ S +   A G
Sbjct:   583 IHGVAYHHAGMELSDRKVVEGAFTVGDIPVLFTTSTLAMGVNLPAHLVVIKS-TMHYAGG 641

Query:   559 RIQ-LTSNELFQMAGRAGRRGIDNRGHVVLV 588
               +  +  ++ QM GRAGR   D     V++
Sbjct:   642 MFEEYSETDILQMIGRAGRPQFDTTATAVIM 672

 Score = 131 (51.2 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
 Identities = 48/158 (30%), Positives = 80/158 (50%)

Query:   178 VVSAPTSSGKTLIXXXXXXXXXX------NQRRIFYTTPLKALSNQKFREFRETFGDNNV 231
             V+ APT SGKT++                +  +I Y  P+KAL +Q+F ++++ FG   +
Sbjct:   302 VICAPTGSGKTVVFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKKKFGP--I 359

Query:   232 GL----LTGDSAINREAQI----LIMTTEILRNMLYQSVGMVSSESGLFD-VDVIVLDEV 282
             GL    LTGD+ ++   +I    +IMTT       + S+     ++ L   V + ++DEV
Sbjct:   360 GLNCKELTGDTVMDDLFEIQHAHIIMTTP----EKWDSMTRKWRDNSLVHLVRLFLIDEV 415

Query:   283 HYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 320
             H + D +RG   E +++   K VQI  LS  V N + +
Sbjct:   416 HVVKDENRGPTLE-VVVSRMKTVQI--LSPAVENTNSI 450

 Score = 76 (31.8 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
 Identities = 47/176 (26%), Positives = 81/176 (46%)

Query:   234 LTGDSAINREAQI----LIMTTEILRNMLYQSVGMVSSESGLFD-VDVIVLDEVHYLSDI 288
             LTGD+ ++   +I    +IMTT       + S+     ++ L   V + ++DEVH + D 
Sbjct:   366 LTGDTVMDDLFEIQHAHIIMTTP----EKWDSMTRKWRDNSLVHLVRLFLIDEVHVVKDE 421

Query:   289 SRGTVWEEIIIYCPKEVQI----------------ICLSATVANADELAGWI--GQIHGK 330
             +RG   E +++   K VQI                + +SAT+ NA+++A W+  G+    
Sbjct:   422 NRGPTLE-VVVSRMKTVQILSPAVENTNSIIPMRFVAVSATIPNAEDIAEWLSDGERSAV 480

Query:   331 TELITSSRRPVPLTWYFSTKTAL-LPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
                +    RPV L      K  L  P  D + +     L+LNY +++ S ++ Y D
Sbjct:   481 CLKMDERHRPVKLR-----KVVLGFPSSDNQTE-FKFDLTLNY-KIA-SIIQTYSD 528

 Score = 37 (18.1 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query:   955 TEEKIKRLKARSKR--LTKRIEQIEPSGWKEFLRISNVIHETRALD-IN-----TQVIFP 1006
             T E +K+    S +  L+  +  I  +  KEFL +   I+E +AL+ +N     T + FP
Sbjct:   793 TFETVKKFCTMSGKETLSDLVTMI--ASCKEFLDVQLRINEKKALNTLNKDPNRTTIRFP 850

Query:  1007 L 1007
             +
Sbjct:   851 M 851


>RGD|1307995 [details] [associations]
            symbol:Ascc3 "activating signal cointegrator 1 complex subunit
            3" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
            evidence=ISS] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0008283 "cell proliferation"
            evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00382 SMART:SM00490 RGD:1307995 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
            GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
            SMART:SM00611 SMART:SM00973 IPI:IPI01016410 UniGene:Rn.24209
            Ensembl:ENSRNOT00000057016 UCSC:RGD:1307995
            GeneTree:ENSGT00640000091272 ArrayExpress:F1LPQ2 Uniprot:F1LPQ2
        Length = 2197

 Score = 152 (58.6 bits), Expect = 5.3e-13, Sum P(3) = 5.3e-13
 Identities = 43/135 (31%), Positives = 65/135 (48%)

Query:   491 REPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
             R   ++ L   G + HHAG L   ++ +E LF  G +KV+  T TLA G+N+PA   ++ 
Sbjct:   768 RNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIK 827

Query:   550 SLSKRTAS-GR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
                   A  G  + L   ++ Q+ GRAGR   D  G  +++ T ++       LL     
Sbjct:   828 GTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITT-HDKLSHYLSLL-TQQN 885

Query:   608 PLVSQFTASYGMVLN 622
             P+ SQF  S    LN
Sbjct:   886 PIESQFLESLADNLN 900

 Score = 141 (54.7 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
 Identities = 35/102 (34%), Positives = 52/102 (50%)

Query:   490 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
             VR+  +K  L  G+  HHAG     +  +EELF    V+V+ AT TLA G+N PA   ++
Sbjct:  1603 VRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVII 1662

Query:   549 SSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
                       R  +     ++ QM GRAGR   D++G  V++
Sbjct:  1663 KGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVIL 1704

 Score = 134 (52.2 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
 Identities = 54/185 (29%), Positives = 89/185 (48%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXXXNQ---RRIFYTTPLKALSNQKFREFR----ETFGD 228
             +V++ APT SGKT +          N+    +  Y  PLKAL  ++  +++    E  G 
Sbjct:  1345 NVLLGAPTGSGKT-VAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGK 1403

Query:   229 NNVGLLTGDSAINREAQI---LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285
               + L TGD   + ++     LI+TT    + + +S     + S +  V+++++DE+H L
Sbjct:  1404 KVIEL-TGDVTPDMKSIAKADLIVTTPEKWDGVSRSW---QNRSYVQQVNILIIDEIHLL 1459

Query:   286 SDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSR 338
              +  RG V E I+        +  K V+I+ LS  +ANA +LA W+            S 
Sbjct:  1460 GE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSV 1518

Query:   339 RPVPL 343
             RPVPL
Sbjct:  1519 RPVPL 1523

 Score = 111 (44.1 bits), Expect = 5.3e-13, Sum P(3) = 5.3e-13
 Identities = 46/179 (25%), Positives = 84/179 (46%)

Query:   145 EMIDVDELASIYDFRIDKFQRSSIE-AFLRGSSVVVSAPTSSGKTLIXXXXXXXXXX--- 200
             ++ +V +LA     R+++ Q    + A+    ++++ APT +GKT I             
Sbjct:   463 DLDEVGQLAFKGMKRLNRIQSIVFDTAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHF 522

Query:   201 -------NQRRIFYTTPLKALSNQKFREFRETFGDNNVGL--LTGDSAINRE----AQIL 247
                    N+ +I Y  P+KAL+ +    F +      + +  LTGD  +++      Q+L
Sbjct:   523 HQGVLKKNEFKIVYVAPMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKSEILRTQML 582

Query:   248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 306
             + T E    +  +SVG V+       V +++LDEVH L +  RG V E I+    ++V+
Sbjct:   583 VTTPEKWDVVTRKSVGDVALSQ---IVKLLILDEVHLLHE-DRGPVLESIVARTLRQVE 637

 Score = 62 (26.9 bits), Expect = 5.3e-13, Sum P(3) = 5.3e-13
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query:  1014 IRGENELWLAMV-LRNKILLDLKPAQLAAVCASLVS--EGIKVRLWKNNSSIYEPSTTVI 1070
             IR E +L   ++ L   +  D+K    A +  +     +G+  R W+N S + + +  +I
Sbjct:  1395 IRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVS-RSWQNRSYVQQVNILII 1453

Query:  1071 NVINVLDEHRSSFLEL 1086
             + I++L E R   LE+
Sbjct:  1454 DEIHLLGEERGPVLEV 1469

 Score = 41 (19.5 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query:    16 FANTKPFSFHQFHTLSHT 33
             F++  P     FHTL HT
Sbjct:  1325 FSHFNPVQTQIFHTLYHT 1342

 Score = 40 (19.1 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
 Identities = 18/80 (22%), Positives = 32/80 (40%)

Query:   915 YHDAVENYKEQRTKVARLKKKIART----EGFKEYKKIVDTVKFTEEKIKRLKARSKRLT 970
             + D+VE + E         K+   T       ++Y   V   +   E   ++K  S  +T
Sbjct:  2046 WDDSVEGHNELSISTLTADKRDENTWIKLHADQQYVLQVSLQRVHFE-FHKVKHESHAVT 2104

Query:   971 KRIEQIEPSGWKEFLRISNV 990
              R  +++  GW  FL +  V
Sbjct:  2105 PRFPKLKDEGW--FLILGEV 2122

 Score = 38 (18.4 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
 Identities = 32/145 (22%), Positives = 57/145 (39%)

Query:   950 DTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGE 1009
             D +K  EE+I+ L A    L    E   P G +      N++ +T  +       F L  
Sbjct:  1023 DQIKVREEEIEELDAL---LNNFCELSAPGGVENSYGKINILLQTY-ISRGEMDSFSLIS 1078

Query:  1010 TAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTV 1069
              +A +  +N   +   L    L    P     +    +S+ I  RLW   S + + S   
Sbjct:  1079 DSAYV-AQNAARIVRALFEIALRKRWPTMTYRLLN--LSKVIDKRLWGWASPLRQFSVLP 1135

Query:  1070 INVINVLDEHRSSFLELQEKHGVEI 1094
              +++  L+E   +  +L++    EI
Sbjct:  1136 PHILTRLEEKNLTVDKLKDMRKDEI 1160

 Score = 37 (18.1 bits), Expect = 5.6e-11, Sum P(4) = 5.6e-11
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query:  1044 ASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 1079
             A ++   IK   +K    +YEP     +++ VL +H
Sbjct:  1701 AVILVHDIKKDFYKK--FLYEPFPVESSLLGVLSDH 1734


>UNIPROTKB|F1NTD6 [details] [associations]
            symbol:ascc3 "Activating signal cointegrator 1 complex
            subunit 3" species:9031 "Gallus gallus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0006307 "DNA dealkylation involved in
            DNA repair" evidence=ISS] [GO:0008283 "cell proliferation"
            evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
            GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 CTD:10973 KO:K01529 GO:GO:0043140
            InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
            EMBL:AADN02002229 EMBL:AADN02002230 EMBL:AADN02002231
            EMBL:AADN02002232 EMBL:AADN02002233 EMBL:AADN02002234
            IPI:IPI00590520 RefSeq:XP_419816.1 UniGene:Gga.31679
            ProteinModelPortal:F1NTD6 PRIDE:F1NTD6 GeneID:421790
            KEGG:gga:421790 Uniprot:F1NTD6
        Length = 2211

 Score = 154 (59.3 bits), Expect = 5.3e-13, Sum P(3) = 5.3e-13
 Identities = 43/124 (34%), Positives = 61/124 (49%)

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-GR 559
             G + HHAG L   +S +E LF  G +KV+  T TLA G+N+PA   V+       A  G 
Sbjct:   787 GFSIHHAGMLRQDRSLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGS 846

Query:   560 -IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
              + L   ++ Q+ GRAGR   D  G  +++ T ++       LL     P+ SQF  S  
Sbjct:   847 FVDLGILDVMQIFGRAGRPQFDKFGEGIIITT-HDKLSHYLTLL-TQQNPIESQFLESLA 904

Query:   619 MVLN 622
               LN
Sbjct:   905 DNLN 908

 Score = 141 (54.7 bits), Expect = 4.6e-12, Sum P(5) = 4.6e-12
 Identities = 57/185 (30%), Positives = 88/185 (47%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXXXNQ---RRIFYTTPLKALSNQKFREFR----ETFGD 228
             +V++ APT SGKT +          N+    +  Y  PLKAL  ++  +++    E  G 
Sbjct:  1353 NVLLGAPTGSGKT-VAAELAIFRVFNKYPTSKAVYIAPLKALVRERIEDWKVRIEEKLGK 1411

Query:   229 NNVGLLTGDSAINREA--QI-LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285
               V L TGD   +  A  Q  LI+TT    + + +S     + S +  V ++++DE+H L
Sbjct:  1412 KVVEL-TGDVTPDMRAIAQADLIVTTPEKWDGVSRSW---QNRSYVQKVSILIIDEIHLL 1467

Query:   286 SDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSR 338
              D  RG V E I+        +  K V+++ LS  +ANA +LA W+            S 
Sbjct:  1468 GD-ERGPVLEVIVSRTNFISSHTEKPVRVVGLSTALANARDLADWLNINQMGLFNFRPSV 1526

Query:   339 RPVPL 343
             RPVPL
Sbjct:  1527 RPVPL 1531

 Score = 138 (53.6 bits), Expect = 4.6e-12, Sum P(5) = 4.6e-12
 Identities = 34/102 (33%), Positives = 52/102 (50%)

Query:   490 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
             VR+  +K  L  G+  HHAG     +  +EELF    ++V+ AT TLA G+N PA   ++
Sbjct:  1612 VRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIV 1671

Query:   549 SSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
                       R  +     ++ QM GRAGR   D++G  V++
Sbjct:  1672 KGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVIL 1713

 Score = 113 (44.8 bits), Expect = 5.3e-13, Sum P(3) = 5.3e-13
 Identities = 54/203 (26%), Positives = 95/203 (46%)

Query:   125 EEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDF----RIDKFQRSSIE-AFLRGSSVVV 179
             EE K    E +   ++E    + D+DE+  +  F    R+++ Q    E A+    ++++
Sbjct:   448 EEVKIPHSEPMPIGIEEKIVYIKDLDEIGQLA-FKGMKRLNRIQSIVFETAYNTNENMLI 506

Query:   180 SAPTSSGKTLIXXXXXXXXXX----------NQRRIFYTTPLKALSNQKFREFRETFGDN 229
              APT +GKT I                    ++ +I Y  P+KAL+ +    F +     
Sbjct:   507 CAPTGAGKTNIAMLTVLHEIRQHVQHGVIKKDEFKIVYVAPMKALAAEMTNYFSKRLEPL 566

Query:   230 NVGL--LTGDSAINR----EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283
              + +  LTGD  +++      Q+L+ T E    +  +SVG V+  S L  V +++LDEVH
Sbjct:   567 GITVKELTGDMQLSKGEILRTQMLVTTPEKWDVVTRKSVGDVAL-SQL--VKLLILDEVH 623

Query:   284 YLSDISRGTVWEEIIIYCPKEVQ 306
              L +  RG V E I+    ++V+
Sbjct:   624 LLHE-DRGPVLESIVARTLRQVE 645

 Score = 58 (25.5 bits), Expect = 5.3e-13, Sum P(3) = 5.3e-13
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query:  1049 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL 1086
             +G+  R W+N S + + S  +I+ I++L + R   LE+
Sbjct:  1441 DGVS-RSWQNRSYVQKVSILIIDEIHLLGDERGPVLEV 1477

 Score = 52 (23.4 bits), Expect = 4.6e-12, Sum P(5) = 4.6e-12
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query:   811 DVKPSYYVALGSDN-TWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLL 862
             D++ SY + +G DN T    T   I + Y +  P + + +    P  ++  LL
Sbjct:  1803 DLECSYCIEIGEDNRTIEPLTYGRIASYYYLKHPTIGMFKDQLKPESSVEELL 1855

 Score = 41 (19.5 bits), Expect = 4.6e-12, Sum P(5) = 4.6e-12
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query:    16 FANTKPFSFHQFHTLSHT 33
             F +  P     FHTL HT
Sbjct:  1333 FTHFNPIQTQIFHTLYHT 1350

 Score = 37 (18.1 bits), Expect = 4.6e-12, Sum P(5) = 4.6e-12
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query:   963 KARSKRLTKRIEQIEPSGWKEFLRISNV 990
             K  SK +  R  +++  GW  FL +  V
Sbjct:  2106 KQDSKAVAPRFPKVKDEGW--FLILGEV 2131


>WB|WBGene00012896 [details] [associations]
            symbol:snrp-200 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0009792 "embryo development ending in
            birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0018991
            "oviposition" evidence=IMP] [GO:0042127 "regulation of cell
            proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
            evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
            development" evidence=IMP] InterPro:IPR001650 InterPro:IPR003593
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
            GO:GO:0040007 GO:GO:0018991 GO:GO:0016477 GO:GO:0008406
            GO:GO:0002119 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
            GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
            Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
            HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272 KO:K12854
            OMA:KWDVLSR GO:GO:0008026 EMBL:AL110485 RefSeq:NP_496710.1
            ProteinModelPortal:Q9U2G0 SMR:Q9U2G0 IntAct:Q9U2G0
            MINT:MINT-1062451 STRING:Q9U2G0 PaxDb:Q9U2G0
            EnsemblMetazoa:Y46G5A.4 GeneID:174901 KEGG:cel:CELE_Y46G5A.4
            UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4 InParanoid:Q9U2G0
            NextBio:885976 Uniprot:Q9U2G0
        Length = 2145

 Score = 165 (63.1 bits), Expect = 7.2e-13, Sum P(3) = 7.2e-13
 Identities = 62/248 (25%), Positives = 111/248 (44%)

Query:   383 YKDGGSRRRNSRKHADMNSNNI-VTSFGQHQLSKNSINAIRRSQVPQ--VIDTLWHLRSR 439
             Y+D  +  R   +H     N+       Q  +      A++R Q     V D +     +
Sbjct:   652 YQDVATFLRVKPEHLHFFDNSYRPVPLEQQYIGVTEKKALKRFQAMNEVVYDKIMEHAGK 711

Query:   440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDA--VREPAIKG 497
               +  + F+ +R+      + + D  L  +   + +        IL  +A   +   +K 
Sbjct:   712 SQV--LVFVHSRKETAKTAKAIRDACLEKDTLSAFMREGSASTEILRTEAEQAKNLDLKD 769

Query:   498 LLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS-KRT 555
             LL  G A HHAG   + ++ +E+LF    ++V+F+T TLA G+N+PA T ++        
Sbjct:   770 LLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQIYNP 829

Query:   556 ASGR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 614
               GR  +L + ++ QM GRAGR   D+RG  +L+ T +   +    L+   + P+ SQ  
Sbjct:   830 EKGRWTELGALDIMQMLGRAGRPQYDDRGEGILI-TNHSELQYYLSLMNQQL-PVESQMV 887

Query:   615 ASYGMVLN 622
             +    +LN
Sbjct:   888 SRLTDMLN 895

 Score = 138 (53.6 bits), Expect = 9.0e-05, Sum P(3) = 9.0e-05
 Identities = 47/189 (24%), Positives = 88/189 (46%)

Query:   171 FLRGSSVVVSAPTSSGKTLIXXXXXXXXXXN--QRRIFYTTPLKALSNQKFREFR---ET 225
             F    +V+V AP  SGKT I          N  + +  Y TP++ ++ + + +++   E 
Sbjct:  1334 FESNENVIVCAPNGSGKTAIAELAVLRHFENTPEAKAVYITPMEDMATKVYADWKRRLEP 1393

Query:   226 FGDNNVGLLTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDE 281
                + + LLTG+  ++    +  Q++I T E   N+  +          + +V + + D+
Sbjct:  1394 AIGHTIVLLTGEQTMDLKLAQRGQLIISTPERWDNISRRW----KQRKSVQNVKLFIADD 1449

Query:   282 VHYLSDISRGTVWEEIII---YCPKE----VQIICLSATVANADELAGWIGQIHGKTELI 334
             +H +   S G V+E +     Y   +    V+++ LS+++ NA +L  W+G     T   
Sbjct:  1450 LHMIG-ASNGAVFEVVCSRTRYISSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNF 1508

Query:   335 TSSRRPVPL 343
               S RPVPL
Sbjct:  1509 MPSTRPVPL 1517

 Score = 120 (47.3 bits), Expect = 7.2e-13, Sum P(3) = 7.2e-13
 Identities = 41/151 (27%), Positives = 72/151 (47%)

Query:   204 RIFYTTPLKALSNQKFREFRET---FGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQ 260
             +I Y  P+K+L  +    F +    FG   VG +TGD+ +++E Q +     +     Y 
Sbjct:   531 KIVYIAPMKSLVQEMVGSFSKRLAPFGIT-VGEMTGDAQMSKE-QFMATQVIVCTPEKYD 588

Query:   261 SVGMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSA 312
              V     E      V ++++DE+H L D  RG V E I++   ++++       ++ LSA
Sbjct:   589 VVTRKGGERAYNQMVRLLIIDEIHLLHD-DRGPVLESIVVRTIRQMEQNHDECRLVGLSA 647

Query:   313 TVANADELAGWIGQIHGKTELITSSRRPVPL 343
             T+ N  ++A ++           +S RPVPL
Sbjct:   648 TLPNYQDVATFLRVKPEHLHFFDNSYRPVPL 678

 Score = 110 (43.8 bits), Expect = 7.4e-12, Sum P(3) = 7.4e-12
 Identities = 49/213 (23%), Positives = 96/213 (45%)

Query:   119 PAPSWREEFK-WQRVEKLCNEVKEF--GNEMIDVDELAS----IYD-FR-IDKFQRSSIE 169
             P  S+R + K ++ +     + + F  G +++ V EL       +D ++ +++ Q    +
Sbjct:   425 PDGSYRRQKKSYEEIHVPALKPRPFAEGEKLVSVSELPKWAQPAFDGYKSLNRIQSRLCD 484

Query:   170 AFLRGSS-VVVSAPTSSGKTLIXXXXXXXXXXN-----------QRRIFYTTPLKALSNQ 217
             + LR    +++ APT +GKT +          N           + +I Y  P+K+L  +
Sbjct:   485 SALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQE 544

Query:   218 KFREFRET---FGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD- 273
                 F +    FG   VG +TGD+ +++E Q +     +     Y  V     E      
Sbjct:   545 MVGSFSKRLAPFGIT-VGEMTGDAQMSKE-QFMATQVIVCTPEKYDVVTRKGGERAYNQM 602

Query:   274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 306
             V ++++DE+H L D  RG V E I++   ++++
Sbjct:   603 VRLLIIDEIHLLHD-DRGPVLESIVVRTIRQME 634

 Score = 67 (28.6 bits), Expect = 9.0e-05, Sum P(3) = 9.0e-05
 Identities = 37/163 (22%), Positives = 63/163 (38%)

Query:   435 HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK--RFRILYPDAVRE 492
             H    +  PA+ F+  RR        L    L D      + LA     F+ L  D   E
Sbjct:  1547 HAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFLRLAEHDDTFQALLADIEDE 1606

Query:   493 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
                + +  GV   H G  P     +++LF+   ++V      +   I M A   V+  + 
Sbjct:  1607 SLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRGMCYQIEMSAYLVVV--MD 1664

Query:   553 KRTASGRIQLTSN----ELFQMAGRAGRRGIDNRGH-VVLVQT 590
              +  +G+  +  +    ++  M G A R  +D+    VV+ QT
Sbjct:  1665 TQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMCQT 1707

 Score = 43 (20.2 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query:   349 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 384
             T  ALL +L E G H+    S+   +     + P K
Sbjct:   504 TNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMK 539

 Score = 38 (18.4 bits), Expect = 7.2e-13, Sum P(3) = 7.2e-13
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query:   698 SRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLP 752
             S  LL  A  KE+ ++ E L+ E   R+++ + ME    + L D+ + F N H P
Sbjct:  1966 SAALLERAKAKEVTSVFELLELENDDRSDILQ-ME---GAELADVAR-FCN-HYP 2014


>UNIPROTKB|Q9U2G0 [details] [associations]
            symbol:Y46G5A.4 "Putative U5 small nuclear
            ribonucleoprotein 200 kDa helicase" species:6239 "Caenorhabditis
            elegans" [GO:0005681 "spliceosomal complex" evidence=ISS]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
            SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
            GO:GO:0018991 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
            GO:GO:0008380 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
            GO:GO:0042127 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
            SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
            GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
            EMBL:AL110485 RefSeq:NP_496710.1 ProteinModelPortal:Q9U2G0
            SMR:Q9U2G0 IntAct:Q9U2G0 MINT:MINT-1062451 STRING:Q9U2G0
            PaxDb:Q9U2G0 EnsemblMetazoa:Y46G5A.4 GeneID:174901
            KEGG:cel:CELE_Y46G5A.4 UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4
            InParanoid:Q9U2G0 NextBio:885976 Uniprot:Q9U2G0
        Length = 2145

 Score = 165 (63.1 bits), Expect = 7.2e-13, Sum P(3) = 7.2e-13
 Identities = 62/248 (25%), Positives = 111/248 (44%)

Query:   383 YKDGGSRRRNSRKHADMNSNNI-VTSFGQHQLSKNSINAIRRSQVPQ--VIDTLWHLRSR 439
             Y+D  +  R   +H     N+       Q  +      A++R Q     V D +     +
Sbjct:   652 YQDVATFLRVKPEHLHFFDNSYRPVPLEQQYIGVTEKKALKRFQAMNEVVYDKIMEHAGK 711

Query:   440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDA--VREPAIKG 497
               +  + F+ +R+      + + D  L  +   + +        IL  +A   +   +K 
Sbjct:   712 SQV--LVFVHSRKETAKTAKAIRDACLEKDTLSAFMREGSASTEILRTEAEQAKNLDLKD 769

Query:   498 LLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS-KRT 555
             LL  G A HHAG   + ++ +E+LF    ++V+F+T TLA G+N+PA T ++        
Sbjct:   770 LLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQIYNP 829

Query:   556 ASGR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 614
               GR  +L + ++ QM GRAGR   D+RG  +L+ T +   +    L+   + P+ SQ  
Sbjct:   830 EKGRWTELGALDIMQMLGRAGRPQYDDRGEGILI-TNHSELQYYLSLMNQQL-PVESQMV 887

Query:   615 ASYGMVLN 622
             +    +LN
Sbjct:   888 SRLTDMLN 895

 Score = 138 (53.6 bits), Expect = 9.0e-05, Sum P(3) = 9.0e-05
 Identities = 47/189 (24%), Positives = 88/189 (46%)

Query:   171 FLRGSSVVVSAPTSSGKTLIXXXXXXXXXXN--QRRIFYTTPLKALSNQKFREFR---ET 225
             F    +V+V AP  SGKT I          N  + +  Y TP++ ++ + + +++   E 
Sbjct:  1334 FESNENVIVCAPNGSGKTAIAELAVLRHFENTPEAKAVYITPMEDMATKVYADWKRRLEP 1393

Query:   226 FGDNNVGLLTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDE 281
                + + LLTG+  ++    +  Q++I T E   N+  +          + +V + + D+
Sbjct:  1394 AIGHTIVLLTGEQTMDLKLAQRGQLIISTPERWDNISRRW----KQRKSVQNVKLFIADD 1449

Query:   282 VHYLSDISRGTVWEEIII---YCPKE----VQIICLSATVANADELAGWIGQIHGKTELI 334
             +H +   S G V+E +     Y   +    V+++ LS+++ NA +L  W+G     T   
Sbjct:  1450 LHMIG-ASNGAVFEVVCSRTRYISSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNF 1508

Query:   335 TSSRRPVPL 343
               S RPVPL
Sbjct:  1509 MPSTRPVPL 1517

 Score = 120 (47.3 bits), Expect = 7.2e-13, Sum P(3) = 7.2e-13
 Identities = 41/151 (27%), Positives = 72/151 (47%)

Query:   204 RIFYTTPLKALSNQKFREFRET---FGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQ 260
             +I Y  P+K+L  +    F +    FG   VG +TGD+ +++E Q +     +     Y 
Sbjct:   531 KIVYIAPMKSLVQEMVGSFSKRLAPFGIT-VGEMTGDAQMSKE-QFMATQVIVCTPEKYD 588

Query:   261 SVGMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSA 312
              V     E      V ++++DE+H L D  RG V E I++   ++++       ++ LSA
Sbjct:   589 VVTRKGGERAYNQMVRLLIIDEIHLLHD-DRGPVLESIVVRTIRQMEQNHDECRLVGLSA 647

Query:   313 TVANADELAGWIGQIHGKTELITSSRRPVPL 343
             T+ N  ++A ++           +S RPVPL
Sbjct:   648 TLPNYQDVATFLRVKPEHLHFFDNSYRPVPL 678

 Score = 110 (43.8 bits), Expect = 7.4e-12, Sum P(3) = 7.4e-12
 Identities = 49/213 (23%), Positives = 96/213 (45%)

Query:   119 PAPSWREEFK-WQRVEKLCNEVKEF--GNEMIDVDELAS----IYD-FR-IDKFQRSSIE 169
             P  S+R + K ++ +     + + F  G +++ V EL       +D ++ +++ Q    +
Sbjct:   425 PDGSYRRQKKSYEEIHVPALKPRPFAEGEKLVSVSELPKWAQPAFDGYKSLNRIQSRLCD 484

Query:   170 AFLRGSS-VVVSAPTSSGKTLIXXXXXXXXXXN-----------QRRIFYTTPLKALSNQ 217
             + LR    +++ APT +GKT +          N           + +I Y  P+K+L  +
Sbjct:   485 SALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQE 544

Query:   218 KFREFRET---FGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD- 273
                 F +    FG   VG +TGD+ +++E Q +     +     Y  V     E      
Sbjct:   545 MVGSFSKRLAPFGIT-VGEMTGDAQMSKE-QFMATQVIVCTPEKYDVVTRKGGERAYNQM 602

Query:   274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 306
             V ++++DE+H L D  RG V E I++   ++++
Sbjct:   603 VRLLIIDEIHLLHD-DRGPVLESIVVRTIRQME 634

 Score = 67 (28.6 bits), Expect = 9.0e-05, Sum P(3) = 9.0e-05
 Identities = 37/163 (22%), Positives = 63/163 (38%)

Query:   435 HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK--RFRILYPDAVRE 492
             H    +  PA+ F+  RR        L    L D      + LA     F+ L  D   E
Sbjct:  1547 HAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFLRLAEHDDTFQALLADIEDE 1606

Query:   493 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
                + +  GV   H G  P     +++LF+   ++V      +   I M A   V+  + 
Sbjct:  1607 SLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRGMCYQIEMSAYLVVV--MD 1664

Query:   553 KRTASGRIQLTSN----ELFQMAGRAGRRGIDNRGH-VVLVQT 590
              +  +G+  +  +    ++  M G A R  +D+    VV+ QT
Sbjct:  1665 TQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMCQT 1707

 Score = 43 (20.2 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query:   349 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 384
             T  ALL +L E G H+    S+   +     + P K
Sbjct:   504 TNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMK 539

 Score = 38 (18.4 bits), Expect = 7.2e-13, Sum P(3) = 7.2e-13
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query:   698 SRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLP 752
             S  LL  A  KE+ ++ E L+ E   R+++ + ME    + L D+ + F N H P
Sbjct:  1966 SAALLERAKAKEVTSVFELLELENDDRSDILQ-ME---GAELADVAR-FCN-HYP 2014


>UNIPROTKB|E1BNG3 [details] [associations]
            symbol:ascc3 "Activating signal cointegrator 1 complex
            subunit 3" species:9913 "Bos taurus" [GO:0043140 "ATP-dependent
            3'-5' DNA helicase activity" evidence=ISS] [GO:0032508 "DNA duplex
            unwinding" evidence=ISS] [GO:0008283 "cell proliferation"
            evidence=ISS] [GO:0006307 "DNA dealkylation involved in DNA repair"
            evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005794
            "Golgi apparatus" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
            GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:DAAA02026160 EMBL:DAAA02026161
            EMBL:DAAA02026162 EMBL:DAAA02026163 EMBL:DAAA02026164
            EMBL:DAAA02026165 EMBL:DAAA02026166 EMBL:DAAA02026167
            EMBL:DAAA02026168 EMBL:DAAA02026169 EMBL:DAAA02026170
            EMBL:DAAA02026171 EMBL:DAAA02026172 EMBL:DAAA02026173
            EMBL:DAAA02026174 EMBL:DAAA02026175 EMBL:DAAA02026176
            EMBL:DAAA02026177 EMBL:DAAA02026178 EMBL:DAAA02026179
            EMBL:DAAA02026180 EMBL:DAAA02026181 EMBL:DAAA02026182
            EMBL:DAAA02026183 EMBL:DAAA02026184 EMBL:DAAA02026185
            EMBL:DAAA02026186 EMBL:DAAA02026187 EMBL:DAAA02026188
            EMBL:DAAA02026189 EMBL:DAAA02026190 EMBL:DAAA02026191
            EMBL:DAAA02026192 EMBL:DAAA02026193 EMBL:DAAA02026194
            EMBL:DAAA02026195 EMBL:DAAA02026196 EMBL:DAAA02026197
            EMBL:DAAA02026198 EMBL:DAAA02026199 IPI:IPI00689177
            RefSeq:NP_001193047.1 UniGene:Bt.26262 PRIDE:E1BNG3
            Ensembl:ENSBTAT00000027294 GeneID:538416 KEGG:bta:538416 CTD:10973
            GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC NextBio:20877349
            GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
            SMART:SM00973 Uniprot:E1BNG3
        Length = 2201

 Score = 151 (58.2 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
 Identities = 41/124 (33%), Positives = 61/124 (49%)

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-GR 559
             G + HHAG L   ++ +E LF  G +KV+  T TLA G+N+PA   ++       A  G 
Sbjct:   778 GFSIHHAGMLRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGS 837

Query:   560 -IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
              + L   ++ Q+ GRAGR   D  G  +++ T ++       LL     P+ SQF  S  
Sbjct:   838 FVDLGILDVMQIFGRAGRPQFDKFGEGIIITT-HDKLSHYLSLL-TQQNPIESQFLESLA 895

Query:   619 MVLN 622
               LN
Sbjct:   896 DNLN 899

 Score = 139 (54.0 bits), Expect = 5.8e-11, Sum P(4) = 5.8e-11
 Identities = 33/102 (32%), Positives = 52/102 (50%)

Query:   490 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
             +R+  +K  L  G+  HHAG     +  +EELF    ++V+ AT TLA G+N PA   ++
Sbjct:  1603 IRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVII 1662

Query:   549 SSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
                       R  +     ++ QM GRAGR   D++G  V++
Sbjct:  1663 KGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVIL 1704

 Score = 129 (50.5 bits), Expect = 5.8e-11, Sum P(4) = 5.8e-11
 Identities = 53/185 (28%), Positives = 88/185 (47%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXXXNQ---RRIFYTTPLKALSNQKFREFR----ETFGD 228
             +V++ APT SGKT +          N+    +  Y  PLKAL  ++  +++    E  G 
Sbjct:  1344 NVLLGAPTGSGKT-VAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGK 1402

Query:   229 NNVGLLTGDSAINREAQI---LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285
               + L TGD   + ++     LI+TT    + + +S     + + +  V ++++DE+H L
Sbjct:  1403 KVIEL-TGDVTPDMKSIAKADLIVTTPEKWDGVSRSW---QNRNYVKQVTILIIDEIHLL 1458

Query:   286 SDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSR 338
              +  RG V E I+        +  K V+I+ LS  +ANA +LA W+            S 
Sbjct:  1459 GE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIRQMGLFNFRPSV 1517

Query:   339 RPVPL 343
             RPVPL
Sbjct:  1518 RPVPL 1522

 Score = 114 (45.2 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
 Identities = 48/180 (26%), Positives = 84/180 (46%)

Query:   148 DVDELASIYDF----RIDKFQRSSIE-AFLRGSSVVVSAPTSSGKTLIXXXXXXXXXX-- 200
             D+DE+  +  F    R+++ Q    E A+    ++++ APT +GKT I            
Sbjct:   462 DLDEIGQLA-FKGMRRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQH 520

Query:   201 --------NQRRIFYTTPLKALSNQKFREFRETFGDNNVGL--LTGDSAINRE----AQI 246
                     N+ +I Y  P+KAL+ +    F +      + +  LTGD  +++      Q+
Sbjct:   521 FQQGVIKKNEFKIVYVAPMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKNEILRTQM 580

Query:   247 LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 306
             L+ T E    +  +SVG V+       V +++LDEVH L +  RG V E I+    ++V+
Sbjct:   581 LVTTPEKWDVVTRKSVGDVALSQ---IVKLLILDEVHLLHE-DRGPVLESIVARTLRQVE 636

 Score = 57 (25.1 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
 Identities = 18/76 (23%), Positives = 38/76 (50%)

Query:  1014 IRGENELWLAMV-LRNKILLDLKPAQLAAVCASLVS--EGIKVRLWKNNSSIYEPSTTVI 1070
             +R E +L   ++ L   +  D+K    A +  +     +G+  R W+N + + + +  +I
Sbjct:  1394 VRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVS-RSWQNRNYVKQVTILII 1452

Query:  1071 NVINVLDEHRSSFLEL 1086
             + I++L E R   LE+
Sbjct:  1453 DEIHLLGEERGPVLEV 1468

 Score = 48 (22.0 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query:   119 PAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELA-SIYD 157
             PA    + F W  VEK  N       E   +++L  ++YD
Sbjct:   214 PAEKTNDSFLWCEVEKYLNATLNEMAEATRIEDLCCTLYD 253

 Score = 41 (19.5 bits), Expect = 2.8e-10, Sum P(4) = 2.8e-10
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query:    16 FANTKPFSFHQFHTLSHT 33
             F++  P     FHTL HT
Sbjct:  1324 FSHFNPVQTQIFHTLYHT 1341

 Score = 39 (18.8 bits), Expect = 6.6e-11, Sum P(4) = 6.6e-11
 Identities = 32/145 (22%), Positives = 58/145 (40%)

Query:   950 DTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGE 1009
             D +K  EE+I+ L      L+   E   P G +      N++ +T  +       F L  
Sbjct:  1022 DQIKVREEEIEELDTL---LSNFCELSAPGGVENSYGKINILLQTY-ISRGEVDSFSLIS 1077

Query:  1010 TAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTV 1069
              +A +  +N   +   L    L    PA    +    +S+ I  RLW   S + + S   
Sbjct:  1078 DSAYV-AQNAARIVRALFEIALRKRWPAMTYRLLN--LSKVIDKRLWGWTSPLRQFSVLP 1134

Query:  1070 INVINVLDEHRSSFLELQEKHGVEI 1094
              +++  L+E   +  +L++    EI
Sbjct:  1135 PHILTRLEEKNLTVDKLKDMRKDEI 1159

 Score = 37 (18.1 bits), Expect = 5.8e-11, Sum P(4) = 5.8e-11
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query:  1044 ASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 1079
             A ++   IK   +K    +YEP     +++ VL +H
Sbjct:  1701 AVILVHDIKKDFYKK--FLYEPFPVESSLLGVLSDH 1734


>UNIPROTKB|E2QVY0 [details] [associations]
            symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0008283 "cell proliferation"
            evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
            evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005794
            GO:GO:0006307 GO:GO:0008283 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179
            Pfam:PF02889 SMART:SM00611 SMART:SM00973 Ensembl:ENSCAFT00000005717
            Uniprot:E2QVY0
        Length = 1925

 Score = 150 (57.9 bits), Expect = 1.9e-12, Sum P(4) = 1.9e-12
 Identities = 41/124 (33%), Positives = 61/124 (49%)

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-GR 559
             G + HHAG L   ++ +E LF  G +KV+  T TLA G+N+PA   ++       A  G 
Sbjct:   778 GFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGS 837

Query:   560 -IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
              + L   ++ Q+ GRAGR   D  G  +++ T ++       LL     P+ SQF  S  
Sbjct:   838 FVDLGILDVMQIFGRAGRPQFDRFGEGIIITT-HDKLSHYLTLL-TQQNPIESQFLESLA 895

Query:   619 MVLN 622
               LN
Sbjct:   896 DNLN 899

 Score = 138 (53.6 bits), Expect = 4.2e-11, Sum P(4) = 4.2e-11
 Identities = 34/102 (33%), Positives = 52/102 (50%)

Query:   490 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
             +R+  +K  L  G+  HHAG     +  +EELF    V+V+ AT TLA G+N PA   ++
Sbjct:  1603 LRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVII 1662

Query:   549 SSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
                       R  +     ++ QM GRAGR   D++G  V++
Sbjct:  1663 KGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVIL 1704

 Score = 133 (51.9 bits), Expect = 4.2e-11, Sum P(4) = 4.2e-11
 Identities = 55/186 (29%), Positives = 90/186 (48%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXXXNQ---RRIFYTTPLKALSNQKFREFR----ETFGD 228
             +V++ APT SGKT +          N+    +  Y  PLKAL  ++  +++    E  G 
Sbjct:  1344 NVLLGAPTGSGKT-VAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGK 1402

Query:   229 NNVGLLTGDSAINREAQI---LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285
               + L TGD   + ++     LI+TT    + + +S     + + +  V ++++DE+H L
Sbjct:  1403 KVIEL-TGDVTPDMKSIAKADLIVTTPEKWDGVSRSW---QNRNYVKQVTILIIDEIHLL 1458

Query:   286 SDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQIHGKTEL-ITSS 337
              +  RG V E I+        +  K V+I+ LS  +ANA +LA W+  IH         S
Sbjct:  1459 GE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLN-IHQMGLFNFRPS 1516

Query:   338 RRPVPL 343
              RPVPL
Sbjct:  1517 VRPVPL 1522

 Score = 114 (45.2 bits), Expect = 1.9e-12, Sum P(4) = 1.9e-12
 Identities = 48/180 (26%), Positives = 84/180 (46%)

Query:   148 DVDELASIYDF----RIDKFQRSSIE-AFLRGSSVVVSAPTSSGKTLIXXXXXXXXXX-- 200
             D+DE+  +  F    R+++ Q    E A+    ++++ APT +GKT I            
Sbjct:   462 DLDEIGQLA-FKGMRRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQH 520

Query:   201 --------NQRRIFYTTPLKALSNQKFREFRETFGDNNVGL--LTGDSAINRE----AQI 246
                     N+ +I Y  P+KAL+ +    F +      + +  LTGD  +++      Q+
Sbjct:   521 FQQGVIKKNEFKIVYVAPMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKNEILRTQM 580

Query:   247 LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 306
             L+ T E    +  +SVG V+       V +++LDEVH L +  RG V E I+    ++V+
Sbjct:   581 LVTTPEKWDVVTRKSVGDVALSQ---IVKLLILDEVHLLHE-DRGPVLESIVARTLRQVE 636

 Score = 57 (25.1 bits), Expect = 1.9e-12, Sum P(4) = 1.9e-12
 Identities = 18/76 (23%), Positives = 38/76 (50%)

Query:  1014 IRGENELWLAMV-LRNKILLDLKPAQLAAVCASLVS--EGIKVRLWKNNSSIYEPSTTVI 1070
             +R E +L   ++ L   +  D+K    A +  +     +G+  R W+N + + + +  +I
Sbjct:  1394 VRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVS-RSWQNRNYVKQVTILII 1452

Query:  1071 NVINVLDEHRSSFLEL 1086
             + I++L E R   LE+
Sbjct:  1453 DEIHLLGEERGPVLEV 1468

 Score = 44 (20.5 bits), Expect = 1.9e-12, Sum P(4) = 1.9e-12
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query:   119 PAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELA-SIYD 157
             P     + F W  VEK  N       E   +++L  ++YD
Sbjct:   214 PVEKTNDSFLWCEVEKYLNATLNEMAEATRIEDLCCTLYD 253

 Score = 43 (20.2 bits), Expect = 4.8e-11, Sum P(4) = 4.8e-11
 Identities = 33/145 (22%), Positives = 58/145 (40%)

Query:   950 DTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGE 1009
             D +K  EE+I+ L A    L    E   P G +      N++ +T  +       F L  
Sbjct:  1022 DQIKVREEEIEELDAL---LNNFCELAAPGGVENSYGKINILLQTY-ISRGEMDSFSLIS 1077

Query:  1010 TAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTV 1069
              +A +  +N   +   L    L    PA    +    +S+ I  RLW   S + + S   
Sbjct:  1078 DSAYV-AQNAARIVRALFEIALRKRWPAMTYRLLN--LSKVIDKRLWGWASPLRQFSVLP 1134

Query:  1070 INVINVLDEHRSSFLELQEKHGVEI 1094
              +++  L+E   +  +L++    EI
Sbjct:  1135 PHILTRLEEKNLTVDKLKDMRKDEI 1159

 Score = 41 (19.5 bits), Expect = 8.3e-11, Sum P(4) = 8.3e-11
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query:    16 FANTKPFSFHQFHTLSHT 33
             F++  P     FHTL HT
Sbjct:  1324 FSHFNPVQTQIFHTLYHT 1341

 Score = 37 (18.1 bits), Expect = 4.2e-11, Sum P(4) = 4.2e-11
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query:  1044 ASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 1079
             A ++   IK   +K    +YEP     +++ VL +H
Sbjct:  1701 AVILVHDIKKDFYKK--FLYEPFPVESSLLGVLSDH 1734


>UNIPROTKB|F1PXD9 [details] [associations]
            symbol:POLQ "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
            GO:GO:0008026 EMBL:AAEX03017021 Ensembl:ENSCAFT00000018256
            OMA:NECHITF Uniprot:F1PXD9
        Length = 1835

 Score = 155 (59.6 bits), Expect = 2.4e-12, Sum P(4) = 2.4e-12
 Identities = 62/220 (28%), Positives = 102/220 (46%)

Query:   466 LLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGL 525
             +L++  + EV   LKR     P  +     K +  GVA HHAG     +  IE  F++G 
Sbjct:   290 VLEQKGLLEVMDQLKRS----PSGLDSVLQKTIPWGVAFHHAGLTFEERDIIEGAFRQGQ 345

Query:   526 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 585
             ++V+ AT TL++G+N+PAR  ++    +    G   L      QM GRAGR+G+D  G  
Sbjct:   346 IRVLAATSTLSSGVNLPARRVII----RTPIFGGQPLDILTYKQMVGRAGRKGVDTVGES 401

Query:   586 VLVQTPYEGAEECCKLLFAGVEPLVS--------QFTASY-GMVLNLLAGAKVMHLSNES 636
             +LV    E ++    LL   ++P+ S        + TAS    +L ++ G     +++ S
Sbjct:   402 ILVCKNSEKSKGIA-LLQGSLKPVRSCLQRQKGEEVTASMIRAILEIIVGG----VASTS 456

Query:   637 DDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELC 676
              DM+   +   L  + K  E   G+    + +     E C
Sbjct:   457 QDMQTYASCTFLAASMK--EGKLGSQKNQDCVQLGAIEAC 494

 Score = 105 (42.0 bits), Expect = 2.4e-12, Sum P(4) = 2.4e-12
 Identities = 49/191 (25%), Positives = 84/191 (43%)

Query:   172 LRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRR-IFYTTPLKALSNQKFREFRETF---G 227
             L G ++V SAPTS+GKTL+            R+   +  P  +++ +K    +  F   G
Sbjct:    15 LEGKNLVYSAPTSAGKTLVAELLMLKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEIG 74

Query:   228 DNNVGLLTGDSAINREAQILIMTTEILR-NMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286
              N  G +   S     + + I    I R N L   +  +  E+ +  + ++V+DE+H L 
Sbjct:    75 INVDGYMGSTSPTGHFSSLDIAVCTIERANGL---INRLIEENKMDLLGMVVVDELHMLG 131

Query:   287 DISRGTVWEEI---IIYCPKEVQIIC---LSATVANADELAGWIGQIHG--------KTE 332
             D  RG + E +   I Y   +    C   L++ ++NA ++ G    +            E
Sbjct:   132 DSHRGYLLELLLTKICYITHK-SASCQADLASPLSNAVQIVGMSATLPNLEIVASWLNAE 190

Query:   333 LITSSRRPVPL 343
             L  ++ RPVPL
Sbjct:   191 LYHTNFRPVPL 201

 Score = 63 (27.2 bits), Expect = 2.4e-12, Sum P(4) = 2.4e-12
 Identities = 25/100 (25%), Positives = 48/100 (48%)

Query:   923 KEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWK 982
             K+    + R K K +  EG +  KK+V T+ F + K + L   S++++      + S   
Sbjct:   899 KQVSLNINREKLKTSLNEGRRHTKKVVQTLLFEKTKKEALNFSSEKISTASGSWKHSKHV 958

Query:   983 EFLRISNVIHETRA--LDINTQVIF-PLG-ETAAAIRGEN 1018
             +  R S+ + +T    +D+  Q +  P+  E +  + GEN
Sbjct:   959 KRSRHSSPVKDTGMDRIDLQEQTMSNPVYCEDSFTLDGEN 998

 Score = 40 (19.1 bits), Expect = 2.4e-12, Sum P(4) = 2.4e-12
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query:  1027 RNKILLDLKPAQLAAVCASLVSE-GIKVRLWKNNSSIYEPST 1067
             + K++ DL+P Q+  +  S  +E   K+   +NN+   E S+
Sbjct:  1587 KQKVISDLEPNQVEGISFSPNTEVKSKIGTLENNALHGETSS 1628

 Score = 37 (18.1 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query:  1085 ELQEKHGV---EIPCCLDSQ--FSGMVEAWASGLTWREM 1118
             E+ +K+G    +I     S   ++GM+  +++ L W  M
Sbjct:   645 EINQKYGCSRGQIQSLQQSAAVYAGMITVFSNRLGWHNM 683


>UNIPROTKB|A6NGI5 [details] [associations]
            symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00973
            GO:GO:0008026 EMBL:BX323048 EMBL:AC098691 HGNC:HGNC:20193
            HOGENOM:HOG000293238 HOVERGEN:HBG103774 ChiTaRS:HFM1
            IPI:IPI00852573 ProteinModelPortal:A6NGI5 STRING:A6NGI5
            Ensembl:ENST00000370424 ArrayExpress:A6NGI5 Bgee:A6NGI5
            Uniprot:A6NGI5
        Length = 1114

 Score = 160 (61.4 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
 Identities = 47/152 (30%), Positives = 73/152 (48%)

Query:   440 DMLPAIWFIFNRRGCDAAVQYL-EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL 498
             D  P + F   R+G   A   L +D   +   E  +    L++    Y  +VR+  ++ +
Sbjct:   205 DQKPTLVFCATRKGVQQAASVLVKDAKFIMTVEQKQ---RLQK----YAYSVRDSKLRDI 257

Query:   499 LK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
             LK G A HHAG     +  +E  F  G + V+F T TLA G+N+PA   V+ S +   A 
Sbjct:   258 LKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKS-TMHYAG 316

Query:   558 GRIQ-LTSNELFQMAGRAGRRGIDNRGHVVLV 588
             G  +  +  ++ QM GRAGR   D     V++
Sbjct:   317 GLFEEYSETDILQMIGRAGRPQFDTTATAVIM 348

 Score = 111 (44.1 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
 Identities = 39/122 (31%), Positives = 66/122 (54%)

Query:   204 RIFYTTPLKALSNQKFREFRETFGDNNVGL----LTGDSAINREAQI----LIMTTEILR 255
             +I Y  P+KAL +Q+F +++E FG   +GL    LTGD+ ++   +I    +IMTT    
Sbjct:    11 KIVYMAPIKALCSQRFDDWKEKFGP--IGLNCKELTGDTVMDDLFEIQHAHIIMTTP--- 65

Query:   256 NMLYQSVGMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATV 314
                + S+     ++ L   V + ++DEVH + D +RG   E +++   K VQ +  S T+
Sbjct:    66 -EKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLE-VVVSRMKTVQSV--SQTL 121

Query:   315 AN 316
              N
Sbjct:   122 KN 123

 Score = 74 (31.1 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
 Identities = 36/133 (27%), Positives = 62/133 (46%)

Query:   234 LTGDSAINREAQI----LIMTTEILRNMLYQSVGMVSSESGLFD-VDVIVLDEVHYLSDI 288
             LTGD+ ++   +I    +IMTT       + S+     ++ L   V + ++DEVH + D 
Sbjct:    43 LTGDTVMDDLFEIQHAHIIMTTP----EKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDE 98

Query:   289 SRGTVWEEIIIYCPKEVQ----------------IICLSATVANADELAGWI--GQIHGK 330
             +RG   E +++   K VQ                 + +SAT+ NA+++A W+  G+    
Sbjct:    99 NRGPTLE-VVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAV 157

Query:   331 TELITSSRRPVPL 343
                +  S RPV L
Sbjct:   158 CLKMDESHRPVKL 170

 Score = 37 (18.1 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query:   979 SGWKEFLRISNVIHETRALD 998
             +G KEFL I   I+E + L+
Sbjct:   493 AGCKEFLDIQLRINEKKTLN 512


>WB|WBGene00013189 [details] [associations]
            symbol:Y54E2A.4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
            InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
            eggNOG:COG1204 HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272
            GO:GO:0008026 EMBL:AL032646 RefSeq:NP_497060.2
            ProteinModelPortal:Q9XWI1 SMR:Q9XWI1 PaxDb:Q9XWI1
            EnsemblMetazoa:Y54E2A.4 GeneID:190256 KEGG:cel:CELE_Y54E2A.4
            UCSC:Y54E2A.4 CTD:190256 WormBase:Y54E2A.4 Uniprot:Q9XWI1
        Length = 2017

 Score = 142 (55.0 bits), Expect = 2.8e-12, Sum P(3) = 2.8e-12
 Identities = 38/118 (32%), Positives = 59/118 (50%)

Query:   500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
             +G+  HHAG     +  +E  F  G V V+F T TLA G+N+PA   V+       A   
Sbjct:   617 RGMGIHHAGLCRQDRILMERCFAEGHVSVLFCTATLAWGVNLPAHAVVIKGTDVFDAEKG 676

Query:   560 I--QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 615
             +   L   ++ Q+ GRAGR   +N GH +++ T  +  ++   +L     P+ SQF A
Sbjct:   677 VFTDLGVLDVQQIFGRAGRPQFENEGHGIIITTR-DKIDKYLTML-VHQNPIESQFYA 732

 Score = 139 (54.0 bits), Expect = 4.5e-12, Sum P(3) = 4.5e-12
 Identities = 53/187 (28%), Positives = 91/187 (48%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXXXNQ--RRIFYTTPLKALSNQKFREFRETFGDN---N 230
             S ++ APT SGKTL           +    ++ Y  PLK+L  ++  ++++ F D     
Sbjct:  1197 SALIGAPTGSGKTLCAELAMFRLLQDHPGMKVVYIAPLKSLVRERVDDWKKKFEDGMGYR 1256

Query:   231 VGLLTGDSAINRE---AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287
             V  ++GD   + E   A  +++TT    + + +S    ++   +  V +IVLDEVH L  
Sbjct:  1257 VVEVSGDVTPDPEELAASSILITTPEKWDGISRSW---ATREYVRRVGLIVLDEVHLLG- 1312

Query:   288 ISRGTVWEEIII---------YCPKE-VQIICLSATVANADELAGWIGQIHGKTELITSS 337
             + RG V E I+          +  +E V+++ LS  +ANA ++A W+G           S
Sbjct:  1313 VDRGAVLEAIVSRLKMITRRSHVTEEPVRLLGLSTALANAGDVAEWLGIPDEACYNFRPS 1372

Query:   338 RRPVPLT 344
              RPVP++
Sbjct:  1373 VRPVPIS 1379

 Score = 128 (50.1 bits), Expect = 4.5e-12, Sum P(3) = 4.5e-12
 Identities = 44/153 (28%), Positives = 71/153 (46%)

Query:   443 PAIWFIFNRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPAIKGLLK 500
             P + F+ +RR     +  L   NLL  D      + + +     L   A+++  +K  L 
Sbjct:  1413 PVLIFVSSRR--QTRLTALAFVNLLIADHNPKQWLNMDMLELEDLMA-AIKDENLKLTLP 1469

Query:   501 -GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-G 558
              G+  HHAG     ++ +E+LF    ++V+ AT TLA GIN PA   ++          G
Sbjct:  1470 FGIGMHHAGLSAHERAIVEQLFIEKKIQVLIATATLAWGINCPAHLVIVKGTEYFDGKKG 1529

Query:   559 R-IQLTSNELFQMAGRAGRRGIDNRG-HVVLVQ 589
             + +     ++ QM GRAGR   D+    V+ VQ
Sbjct:  1530 KYVDFPVTDVLQMMGRAGRPQFDDSAVAVIYVQ 1562

 Score = 127 (49.8 bits), Expect = 2.8e-12, Sum P(3) = 2.8e-12
 Identities = 54/169 (31%), Positives = 88/169 (52%)

Query:   204 RIFYTTPLKALSNQKFREFRETFGDN--NVGL----LTGDSAINR----EAQILIMTTEI 253
             +I Y  P+KAL+     E  E+FG     +GL    LTGD+ ++R    + Q+L++T E 
Sbjct:   368 KIIYIAPMKALAT----EMTESFGKRLAPLGLKVKELTGDTQLSRNEVADTQMLVLTPEK 423

Query:   254 LRNMLYQSVGMVSSESGLFDV-DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ------ 306
                +  +S    +S++ L +V  ++++DEVH L D  RG V E ++    ++V+      
Sbjct:   424 WDVITRKS----TSDNSLINVVRLLIIDEVHLLHD-ERGPVIETLVARTLRQVEMSQSGI 478

Query:   307 -IICLSATVANADELAGWIGQIHGKTELITSSR-RPVPLTWYF-STKTA 352
              I+ LSAT+ N  ++A ++     K       R RPVPLT  F  T+ A
Sbjct:   479 RIVGLSATLPNFIDVARFLRVNPYKGLFFFDGRFRPVPLTQKFIGTRKA 527

 Score = 106 (42.4 bits), Expect = 3.7e-10, Sum P(3) = 3.7e-10
 Identities = 49/183 (26%), Positives = 87/183 (47%)

Query:   148 DVDELAS--IYDF-RIDKFQRSSIE-AFLRGSSVVVSAPTSSGKT---LIXXXXXXXXXX 200
             D+DEL       F +++  Q    E A+    ++++ APT +GKT   ++          
Sbjct:   297 DMDELGQKGFKGFEKLNVIQSIVFEQAYKTKENLLICAPTGAGKTNIAMLTILNTIHEHQ 356

Query:   201 NQR--------RIFYTTPLKALSNQKFREFRETFGDN--NVGL----LTGDSAINREAQI 246
             N R        +I Y  P+KAL+     E  E+FG     +GL    LTGD+ ++R  ++
Sbjct:   357 NSRGDIMKDDFKIIYIAPMKALAT----EMTESFGKRLAPLGLKVKELTGDTQLSRN-EV 411

Query:   247 LIMTTEILRNMLYQSVGMVS-SESGLFDV-DVIVLDEVHYLSDISRGTVWEEIIIYCPKE 304
                   +L    +  +   S S++ L +V  ++++DEVH L D  RG V E ++    ++
Sbjct:   412 ADTQMLVLTPEKWDVITRKSTSDNSLINVVRLLIIDEVHLLHD-ERGPVIETLVARTLRQ 470

Query:   305 VQI 307
             V++
Sbjct:   471 VEM 473

 Score = 48 (22.0 bits), Expect = 2.8e-12, Sum P(3) = 2.8e-12
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query:   677 KIQKETDVLTSEISDDA-IDRKSRRLLSEAAYKEMANLQEELKA 719
             ++Q   ++  S   DDA + R++++L  E    + A  +E LKA
Sbjct:  1838 QLQNHLEIEKSTSLDDAKLARRAQKLFRECTKLDEAQSREVLKA 1881

 Score = 41 (19.5 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
 Identities = 30/141 (21%), Positives = 61/141 (43%)

Query:   620 VLNLLAGAKVMHLSNESDDMKALQAGR--SL-----EEARKLVEQSFGNYVGSNVMLAAK 672
             V  LLA ++ +H+ +E D +K    GR  S+     E  R LV+         N++    
Sbjct:  1648 VAELLA-SECIHVDSEQDVIKPTPCGRIASVYYLQHETVRFLVKSLHSGCSVENMLKILT 1706

Query:   673 D--ELCKI--QKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAE---KRFRT 725
             D  E  +I  +   D++ +E+      R S  ++  +A K     Q           +RT
Sbjct:  1707 DVPEYAEIPVRHNEDLINTELQKKLRIRFSTSVMGTSACKAHLLFQAHFMRTVLPTDYRT 1766

Query:   726 ELRRRME--LKRFSALKDILK 744
             +L+  ++  ++   A++++ +
Sbjct:  1767 DLKSVLDQCIRILQAMREMAR 1787


>UNIPROTKB|O75417 [details] [associations]
            symbol:POLQ "DNA polymerase theta" species:9606 "Homo
            sapiens" [GO:0006260 "DNA replication" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0003887 "DNA-directed DNA polymerase activity" evidence=IDA]
            [GO:0043142 "single-stranded DNA-dependent ATPase activity"
            evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] InterPro:IPR001098
            InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
            InterPro:IPR012337 InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00476 PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194
            SMART:SM00482 SMART:SM00490 GO:GO:0005524 GO:GO:0005654
            GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098
            EMBL:AC069239 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            eggNOG:COG1204 GO:GO:0008026 GO:GO:0003887 GO:GO:0043142
            EMBL:AF052573 EMBL:AY338826 EMBL:AC079841 EMBL:AF043628
            IPI:IPI00794779 IPI:IPI01012356 RefSeq:NP_955452.3
            UniGene:Hs.241517 ProteinModelPortal:O75417 STRING:O75417
            PhosphoSite:O75417 PaxDb:O75417 PRIDE:O75417 DNASU:10721
            Ensembl:ENST00000264233 GeneID:10721 KEGG:hsa:10721 UCSC:uc003eed.3
            UCSC:uc003eee.4 CTD:10721 GeneCards:GC03M121150 H-InvDB:HIX0030706
            HGNC:HGNC:9186 HPA:HPA048931 MIM:604419 neXtProt:NX_O75417
            PharmGKB:PA33506 HOGENOM:HOG000146444 HOVERGEN:HBG005525 KO:K02349
            OrthoDB:EOG42RD6C ChEMBL:CHEMBL6025 GenomeRNAi:10721 NextBio:40701
            ArrayExpress:O75417 Bgee:O75417 CleanEx:HS_POLH CleanEx:HS_POLQ
            Genevestigator:O75417 GermOnline:ENSG00000051341 Uniprot:O75417
        Length = 2590

 Score = 167 (63.8 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
 Identities = 66/237 (27%), Positives = 109/237 (45%)

Query:   466 LLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGL 525
             +L++ E+ EV   L+R     P  +     K +  GVA HHAG     +  IE  F++GL
Sbjct:   381 ILEQKELLEVMDQLRRL----PSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGL 436

Query:   526 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 585
             ++V+ AT TL++G+N+PAR  ++ +       GR  L      QM GRAGR+G+D  G  
Sbjct:   437 IRVLAATSTLSSGVNLPARRVIIRT---PIFGGR-PLDILTYKQMVGRAGRKGVDTVGES 492

Query:   586 VLVQTPYEGAEECCKLLFAGVEPLVS-----QFTASYGMVLNLLAGAKVMHLSNESDDMK 640
             +L+    E ++    LL   ++P+ S     +     G ++  +    V  +++ S DM 
Sbjct:   493 ILICKNSEKSKGIA-LLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMH 551

Query:   641 ALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRK 697
                A   L  + K  +Q       S V L A +       E + + S  + D  + K
Sbjct:   552 TYAACTFLAASMKEGKQGIQRNQES-VQLGAIEACVMWLLENEFIQSTEASDGTEGK 607

 Score = 106 (42.4 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
 Identities = 45/192 (23%), Positives = 87/192 (45%)

Query:   172 LRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRR-IFYTTPLKALSNQKFREFRETFGDNN 230
             L G ++V SAPTS+GKTL+            R+   +  P  +++ +K    +  F +  
Sbjct:   106 LEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVG 165

Query:   231 VGL--LTGDSAINRE---AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285
             + +    G ++ +R      I + T E    ++ + +     E+ +  + ++V+DE+H L
Sbjct:   166 IKVDGYMGSTSPSRHFSSLDIAVCTIERANGLINRLI----EENKMDLLGMVVVDELHML 221

Query:   286 SDISRGTVWEEI---IIYCPKEVQIIC---LSATVANADELAGWIGQIHG--------KT 331
              D  RG + E +   I Y  ++    C   L+++++NA ++ G    +            
Sbjct:   222 GDSHRGYLLELLLTKICYITRK-SASCQADLASSLSNAVQIVGMSATLPNLELVASWLNA 280

Query:   332 ELITSSRRPVPL 343
             EL  +  RPVPL
Sbjct:   281 ELYHTDFRPVPL 292

 Score = 46 (21.3 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query:   808 DTQDVKPSYYVALGSD 823
             +T++ KPS++ ALG D
Sbjct:  1243 NTEENKPSHFQALGDD 1258

 Score = 37 (18.1 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query:  1085 ELQEKHGV---EIPCCLDSQ--FSGMVEAWASGLTWREM 1118
             E+ +K+G    +I     S   ++GM+  +++ L W  M
Sbjct:   736 EINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNM 774


>UNIPROTKB|F6Y2F0 [details] [associations]
            symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529 InterPro:IPR004179
            Pfam:PF02889 SMART:SM00611 SMART:SM00973 GO:GO:0008026
            Ensembl:ENSCAFT00000005717 EMBL:AAEX03008562 RefSeq:XP_854167.1
            ProteinModelPortal:F6Y2F0 GeneID:475008 KEGG:cfa:475008 OMA:XAVYIAP
            Uniprot:F6Y2F0
        Length = 2202

 Score = 150 (57.9 bits), Expect = 3.4e-12, Sum P(4) = 3.4e-12
 Identities = 41/124 (33%), Positives = 61/124 (49%)

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-GR 559
             G + HHAG L   ++ +E LF  G +KV+  T TLA G+N+PA   ++       A  G 
Sbjct:   778 GFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGS 837

Query:   560 -IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
              + L   ++ Q+ GRAGR   D  G  +++ T ++       LL     P+ SQF  S  
Sbjct:   838 FVDLGILDVMQIFGRAGRPQFDRFGEGIIITT-HDKLSHYLTLL-TQQNPIESQFLESLA 895

Query:   619 MVLN 622
               LN
Sbjct:   896 DNLN 899

 Score = 138 (53.6 bits), Expect = 7.3e-11, Sum P(4) = 7.3e-11
 Identities = 34/102 (33%), Positives = 52/102 (50%)

Query:   490 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
             +R+  +K  L  G+  HHAG     +  +EELF    V+V+ AT TLA G+N PA   ++
Sbjct:  1603 LRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVII 1662

Query:   549 SSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
                       R  +     ++ QM GRAGR   D++G  V++
Sbjct:  1663 KGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVIL 1704

 Score = 133 (51.9 bits), Expect = 7.3e-11, Sum P(4) = 7.3e-11
 Identities = 55/186 (29%), Positives = 90/186 (48%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXXXNQ---RRIFYTTPLKALSNQKFREFR----ETFGD 228
             +V++ APT SGKT +          N+    +  Y  PLKAL  ++  +++    E  G 
Sbjct:  1344 NVLLGAPTGSGKT-VAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGK 1402

Query:   229 NNVGLLTGDSAINREAQI---LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285
               + L TGD   + ++     LI+TT    + + +S     + + +  V ++++DE+H L
Sbjct:  1403 KVIEL-TGDVTPDMKSIAKADLIVTTPEKWDGVSRSW---QNRNYVKQVTILIIDEIHLL 1458

Query:   286 SDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQIHGKTEL-ITSS 337
              +  RG V E I+        +  K V+I+ LS  +ANA +LA W+  IH         S
Sbjct:  1459 GE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLN-IHQMGLFNFRPS 1516

Query:   338 RRPVPL 343
              RPVPL
Sbjct:  1517 VRPVPL 1522

 Score = 114 (45.2 bits), Expect = 3.4e-12, Sum P(4) = 3.4e-12
 Identities = 48/180 (26%), Positives = 84/180 (46%)

Query:   148 DVDELASIYDF----RIDKFQRSSIE-AFLRGSSVVVSAPTSSGKTLIXXXXXXXXXX-- 200
             D+DE+  +  F    R+++ Q    E A+    ++++ APT +GKT I            
Sbjct:   462 DLDEIGQLA-FKGMRRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQH 520

Query:   201 --------NQRRIFYTTPLKALSNQKFREFRETFGDNNVGL--LTGDSAINRE----AQI 246
                     N+ +I Y  P+KAL+ +    F +      + +  LTGD  +++      Q+
Sbjct:   521 FQQGVIKKNEFKIVYVAPMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKNEILRTQM 580

Query:   247 LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 306
             L+ T E    +  +SVG V+       V +++LDEVH L +  RG V E I+    ++V+
Sbjct:   581 LVTTPEKWDVVTRKSVGDVALSQ---IVKLLILDEVHLLHE-DRGPVLESIVARTLRQVE 636

 Score = 57 (25.1 bits), Expect = 3.4e-12, Sum P(4) = 3.4e-12
 Identities = 18/76 (23%), Positives = 38/76 (50%)

Query:  1014 IRGENELWLAMV-LRNKILLDLKPAQLAAVCASLVS--EGIKVRLWKNNSSIYEPSTTVI 1070
             +R E +L   ++ L   +  D+K    A +  +     +G+  R W+N + + + +  +I
Sbjct:  1394 VRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVS-RSWQNRNYVKQVTILII 1452

Query:  1071 NVINVLDEHRSSFLEL 1086
             + I++L E R   LE+
Sbjct:  1453 DEIHLLGEERGPVLEV 1468

 Score = 44 (20.5 bits), Expect = 3.4e-12, Sum P(4) = 3.4e-12
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query:   119 PAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELA-SIYD 157
             P     + F W  VEK  N       E   +++L  ++YD
Sbjct:   214 PVEKTNDSFLWCEVEKYLNATLNEMAEATRIEDLCCTLYD 253

 Score = 43 (20.2 bits), Expect = 8.3e-11, Sum P(4) = 8.3e-11
 Identities = 33/145 (22%), Positives = 58/145 (40%)

Query:   950 DTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGE 1009
             D +K  EE+I+ L A    L    E   P G +      N++ +T  +       F L  
Sbjct:  1022 DQIKVREEEIEELDAL---LNNFCELAAPGGVENSYGKINILLQTY-ISRGEMDSFSLIS 1077

Query:  1010 TAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTV 1069
              +A +  +N   +   L    L    PA    +    +S+ I  RLW   S + + S   
Sbjct:  1078 DSAYV-AQNAARIVRALFEIALRKRWPAMTYRLLN--LSKVIDKRLWGWASPLRQFSVLP 1134

Query:  1070 INVINVLDEHRSSFLELQEKHGVEI 1094
              +++  L+E   +  +L++    EI
Sbjct:  1135 PHILTRLEEKNLTVDKLKDMRKDEI 1159

 Score = 41 (19.5 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query:    16 FANTKPFSFHQFHTLSHT 33
             F++  P     FHTL HT
Sbjct:  1324 FSHFNPVQTQIFHTLYHT 1341

 Score = 37 (18.1 bits), Expect = 7.3e-11, Sum P(4) = 7.3e-11
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query:  1044 ASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 1079
             A ++   IK   +K    +YEP     +++ VL +H
Sbjct:  1701 AVILVHDIKKDFYKK--FLYEPFPVESSLLGVLSDH 1734


>UNIPROTKB|F1P0I1 [details] [associations]
            symbol:F1P0I1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0051607 "defense response to virus" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            OMA:QDCTYAD GeneTree:ENSGT00690000102154 EMBL:AADN02016399
            IPI:IPI00595626 Ensembl:ENSGALT00000015699 Uniprot:F1P0I1
        Length = 1313

 Score = 156 (60.0 bits), Expect = 4.0e-12, Sum P(3) = 4.0e-12
 Identities = 52/184 (28%), Positives = 80/184 (43%)

Query:   155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXX--XXXXXXXNQRRIFYTTPLK 212
             +  F  D +QR  ++A     S V+ APTSSGKT              ++  + Y  P K
Sbjct:   738 VQHFIPDTWQRELLDAVDNNESAVIVAPTSSGKTYASYYCMEKVLKMSDEGVVVYVAPTK 797

Query:   213 ALSNQK----FREFRETFGDNNV--GLLTGDSAIN-REAQILIMTTEILRNMLYQSVGMV 265
             AL NQ     +  F +   D  V  G+ T D   +   +QIL+   + L  ++       
Sbjct:   798 ALVNQVVGSVYSRFTKKLPDGLVVCGVFTRDYRHDVMNSQILVTVPQCLEILMLSP---- 853

Query:   266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEII--IYCPKEVQIICLSATVANADELAGW 323
               +S    +  I+ DE+H L       VWE ++  I CP     + LSAT++N D L  W
Sbjct:   854 RCQSWTKRIQYIIFDEIHCLGGEIGAEVWEHLLVTIRCP----FLALSATISNPDHLTEW 909

Query:   324 IGQI 327
             +  +
Sbjct:   910 LQSV 913

 Score = 109 (43.4 bits), Expect = 4.0e-12, Sum P(3) = 4.0e-12
 Identities = 22/50 (44%), Positives = 30/50 (60%)

Query:   500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
             +G+  HH       +  +E LF+ G +KVV AT TLA GINMP R+ V +
Sbjct:  1248 RGIGYHHGAMAMKERQTVEMLFRLGYIKVVTATSTLALGINMPCRSVVFA 1297

 Score = 48 (22.0 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
 Identities = 33/135 (24%), Positives = 57/135 (42%)

Query:   947 KIVDTVKFTEEKIKRLK-----ARSKRLTKRIEQIEPSG--------WKEFLRISNVIHE 993
             K +D  K+ +E  K L       + +++ + +E ++P          WK F R  + +HE
Sbjct:  1045 KKMDVRKYEQELKKELSNWIAVGQRQKVNEVLENLKPQPVDCSEYEKWKRFARFVDKLHE 1104

Query:   994 TRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKV 1053
                +D    + F  G  +     EN  W   V RN  LL+ +  +          E IK 
Sbjct:  1105 ---MDKLPAIFFIFGLDSV----ENAAW--NVFRN--LLEKQDNERDPKMEK-EKEDIKN 1152

Query:  1054 RLWKNNSSI--YEPS 1066
             +L K N ++  +EP+
Sbjct:  1153 KLRKLNKTLMKFEPT 1167

 Score = 45 (20.9 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query:   919 VENYKEQ-RTKVARLKKKIARTE--GFKEYK--KIVDTVKFTEEKIKRLKARSKRLT 970
             +E  KE  + K+ +L K + + E    K+ K  K+ + V     K K+L+ R K+LT
Sbjct:  1143 MEKEKEDIKNKLRKLNKTLMKFEPTDIKKVKPSKVENMVMLLTMK-KQLQERLKKLT 1198

 Score = 44 (20.5 bits), Expect = 4.0e-12, Sum P(3) = 4.0e-12
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query:   436 LRSRDMLPAIWFIF 449
             L   D LPAI+FIF
Sbjct:  1102 LHEMDKLPAIFFIF 1115

 Score = 40 (19.1 bits), Expect = 3.3e-05, Sum P(3) = 3.3e-05
 Identities = 13/51 (25%), Positives = 28/51 (54%)

Query:   953 KFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV 1003
             K  +EK + +K + ++L K + + EP+  K+ ++ S V +    L +  Q+
Sbjct:  1142 KMEKEK-EDIKNKLRKLNKTLMKFEPTDIKK-VKPSKVENMVMLLTMKKQL 1190


>ZFIN|ZDB-GENE-061207-43 [details] [associations]
            symbol:hfm1 "HFM1, ATP-dependent DNA helicase
            homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-061207-43 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
            Pfam:PF02889 SMART:SM00973 GO:GO:0008026
            GeneTree:ENSGT00550000074822 EMBL:BX927353 EMBL:CABZ01046504
            IPI:IPI00897259 ProteinModelPortal:F1QWJ0
            Ensembl:ENSDART00000099851 Bgee:F1QWJ0 Uniprot:F1QWJ0
        Length = 1049

 Score = 150 (57.9 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
 Identities = 44/154 (28%), Positives = 70/154 (45%)

Query:   440 DMLPAIWFIFNRRGCDAAVQYL-EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL 498
             D  P + F   R+G   +   L +D   +    MS   +  K+  + Y +++ +  ++ L
Sbjct:   256 DQKPTLVFCSTRKGVQQSASVLAKDARFI----MS---IDHKQRLVKYANSLLDAKLRDL 308

Query:   499 -LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
              + G+  HHAG     +   E  F  G + V+F T TLA G+NMPA   V+ S       
Sbjct:   309 FVYGIGYHHAGMDVSDRKITENAFTVGDLPVLFTTSTLAMGVNMPAHLVVIKSTMHYVGG 368

Query:   558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591
                + +  +L QM GRAGR   D     V++  P
Sbjct:   369 ACEEYSEADLLQMIGRAGRPQFDTTATAVIMTRP 402

 Score = 106 (42.4 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
 Identities = 41/163 (25%), Positives = 74/163 (45%)

Query:   154 SIY-DFRIDKFQRSSI--EAFLRGSSVVVSAPTSSGKT------LIXXXXXXXXXXNQRR 204
             S++ DF    + +S    +      + V  APT SGKT      ++          +  R
Sbjct:     4 SVFKDFPYFNYVQSQALDDVLYSNKNFVACAPTGSGKTVLFELAIVRLLIEASEPWHNVR 63

Query:   205 IFYTTPLKALSNQKFREFRETFGDNNVGL----LTGDSAIN-----REAQILIMTTEILR 255
               Y  P+KAL +Q++  +++ FG   +GL    LTGD+ I+     ++A ++  T E   
Sbjct:    64 AVYMAPIKALCSQQYDNWKQKFGP--LGLKCKELTGDTEIDDFFEIQDAHLIFTTAEKWD 121

Query:   256 NMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII 298
             +M  +          L  + + ++DEVH + D +RG   E ++
Sbjct:   122 SMTRRW----KDNCLLTSIRLFLVDEVHVVKDKTRGATLEVVV 160

 Score = 73 (30.8 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
 Identities = 32/131 (24%), Positives = 58/131 (44%)

Query:   234 LTGDSAIN-----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI 288
             LTGD+ I+     ++A ++  T E   +M  +          L  + + ++DEVH + D 
Sbjct:    95 LTGDTEIDDFFEIQDAHLIFTTAEKWDSMTRRW----KDNCLLTSIRLFLVDEVHVVKDK 150

Query:   289 SRGTVWEEII-------IYC----PKE---VQIICLSATVANADELAGWIGQIHGKTELI 334
             +RG   E ++        Y     P+    V+ + +SAT+ N  +++ W+    G    +
Sbjct:   151 TRGATLEVVVSRMKTMHFYRQAINPESKASVRFVAVSATIPNIQDVSEWLSDESGPATCL 210

Query:   335 T--SSRRPVPL 343
                 S RPV L
Sbjct:   211 EMDESHRPVKL 221


>UNIPROTKB|Q8N3C0 [details] [associations]
            symbol:ASCC3 "Activating signal cointegrator 1 complex
            subunit 3" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
            [GO:0005634 "nucleus" evidence=TAS] [GO:0006307 "DNA dealkylation
            involved in DNA repair" evidence=IDA] [GO:0032508 "DNA duplex
            unwinding" evidence=IDA] [GO:0008283 "cell proliferation"
            evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005622 "intracellular" evidence=IDA] InterPro:IPR001650
            InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0006307
            GO:GO:0008283 EMBL:CH471051 GO:GO:0006351 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:10973
            KO:K01529 OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
            SMART:SM00611 SMART:SM00973 EMBL:AL834463 EMBL:AK315197
            EMBL:AL591585 EMBL:AL121965 EMBL:AL133338 EMBL:AL356122 EMBL:Z86062
            EMBL:BC050681 EMBL:BC125211 EMBL:BC125212 EMBL:BC026066
            EMBL:AY013288 EMBL:AJ223948 IPI:IPI00430472 RefSeq:NP_006819.2
            RefSeq:NP_071374.1 UniGene:Hs.486031 ProteinModelPortal:Q8N3C0
            SMR:Q8N3C0 IntAct:Q8N3C0 MINT:MINT-1183138 STRING:Q8N3C0
            PhosphoSite:Q8N3C0 DMDM:158518649 PaxDb:Q8N3C0 PRIDE:Q8N3C0
            DNASU:10973 Ensembl:ENST00000369143 Ensembl:ENST00000369162
            Ensembl:ENST00000522650 GeneID:10973 KEGG:hsa:10973 UCSC:uc003pqk.3
            GeneCards:GC06M100956 H-InvDB:HIX0021958 HGNC:HGNC:18697
            HPA:HPA031608 HPA:HPA031609 HPA:HPA031610 MIM:614217
            neXtProt:NX_Q8N3C0 PharmGKB:PA134890913 eggNOG:COG1204
            HOGENOM:HOG000152625 HOVERGEN:HBG051896 InParanoid:Q8N3C0
            PhylomeDB:Q8N3C0 ChiTaRS:ASCC3 GenomeRNAi:10973 NextBio:41694
            ArrayExpress:Q8N3C0 Bgee:Q8N3C0 CleanEx:HS_ASCC3
            Genevestigator:Q8N3C0 GermOnline:ENSG00000112249 Uniprot:Q8N3C0
        Length = 2202

 Score = 149 (57.5 bits), Expect = 8.6e-12, Sum P(4) = 8.6e-12
 Identities = 41/124 (33%), Positives = 61/124 (49%)

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-GR 559
             G + HHAG L   ++ +E LF  G +KV+  T TLA G+N+PA   ++       A  G 
Sbjct:   778 GFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGS 837

Query:   560 -IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
              + L   ++ Q+ GRAGR   D  G  +++ T ++       LL     P+ SQF  S  
Sbjct:   838 FVDLGILDVMQIFGRAGRPQFDKFGEGIIITT-HDKLSHYLTLLTQR-NPIESQFLESLA 895

Query:   619 MVLN 622
               LN
Sbjct:   896 DNLN 899

 Score = 141 (54.7 bits), Expect = 7.1e-11, Sum P(4) = 7.1e-11
 Identities = 35/102 (34%), Positives = 52/102 (50%)

Query:   490 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
             VR+  +K  L  G+  HHAG     +  +EELF    V+V+ AT TLA G+N PA   ++
Sbjct:  1603 VRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVII 1662

Query:   549 SSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
                       R  +     ++ QM GRAGR   D++G  V++
Sbjct:  1663 KGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVIL 1704

 Score = 129 (50.5 bits), Expect = 7.1e-11, Sum P(4) = 7.1e-11
 Identities = 53/185 (28%), Positives = 88/185 (47%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXXXNQ---RRIFYTTPLKALSNQKFREFR----ETFGD 228
             +V++ APT SGKT +          N+    +  Y  PLKAL  ++  +++    E  G 
Sbjct:  1344 NVLLGAPTGSGKT-VAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGK 1402

Query:   229 NNVGLLTGDSAINREAQI---LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285
               + L TGD   + ++     LI+TT    + + +S     + + +  V ++++DE+H L
Sbjct:  1403 KVIEL-TGDVTPDMKSIAKADLIVTTPEKWDGVSRSW---QNRNYVQQVTILIIDEIHLL 1458

Query:   286 SDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSR 338
              +  RG V E I+        +  K V+I+ LS  +ANA +LA W+            S 
Sbjct:  1459 GE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSV 1517

Query:   339 RPVPL 343
             RPVPL
Sbjct:  1518 RPVPL 1522

 Score = 109 (43.4 bits), Expect = 8.6e-12, Sum P(4) = 8.6e-12
 Identities = 48/180 (26%), Positives = 83/180 (46%)

Query:   148 DVDELASIYDF----RIDKFQRSSIE-AFLRGSSVVVSAPTSSGKTLIXXXXXXXXXX-- 200
             D+DE+  +  F    R+++ Q    E A+    ++++ APT +GKT I            
Sbjct:   462 DLDEIGQLA-FKGMKRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQH 520

Query:   201 --------NQRRIFYTTPLKALSNQKFREFRETFGDNNVGL--LTGDSAINRE----AQI 246
                     N+ +I Y  P+KAL+ +    F        + +  LTGD  +++      Q+
Sbjct:   521 FQQGVIKKNEFKIVYVAPMKALAAEMTDYFSRRLEPLGIIVKELTGDMQLSKSEILRTQM 580

Query:   247 LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 306
             L+ T E    +  +SVG V+       V +++LDEVH L +  RG V E I+    ++V+
Sbjct:   581 LVTTPEKWDVVTRKSVGDVALSQ---IVRLLILDEVHLLHE-DRGPVLESIVARTLRQVE 636

 Score = 58 (25.5 bits), Expect = 8.6e-12, Sum P(4) = 8.6e-12
 Identities = 18/76 (23%), Positives = 38/76 (50%)

Query:  1014 IRGENELWLAMV-LRNKILLDLKPAQLAAVCASLVS--EGIKVRLWKNNSSIYEPSTTVI 1070
             +R E +L   ++ L   +  D+K    A +  +     +G+  R W+N + + + +  +I
Sbjct:  1394 VRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVS-RSWQNRNYVQQVTILII 1452

Query:  1071 NVINVLDEHRSSFLEL 1086
             + I++L E R   LE+
Sbjct:  1453 DEIHLLGEERGPVLEV 1468

 Score = 45 (20.9 bits), Expect = 8.6e-12, Sum P(4) = 8.6e-12
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query:   119 PAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELA-SIYD 157
             P       F W  VEK  N   +   E+  V++L  ++YD
Sbjct:   214 PVEKTNGSFLWCEVEKYLNSTLKEMTEVPRVEDLCCTLYD 253

 Score = 41 (19.5 bits), Expect = 1.8e-10, Sum P(4) = 1.8e-10
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query:    16 FANTKPFSFHQFHTLSHT 33
             F++  P     FHTL HT
Sbjct:  1324 FSHFNPVQTQIFHTLYHT 1341

 Score = 37 (18.1 bits), Expect = 7.1e-11, Sum P(4) = 7.1e-11
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query:  1044 ASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 1079
             A ++   IK   +K    +YEP     +++ VL +H
Sbjct:  1701 AVILVHDIKKDFYKK--FLYEPFPVESSLLGVLSDH 1734


>UNIPROTKB|E3W980 [details] [associations]
            symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
            sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001650
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003676 GO:GO:0004386 EMBL:AC096768
            HGNC:HGNC:18536 IPI:IPI00965172 ProteinModelPortal:E3W980
            SMR:E3W980 Ensembl:ENST00000510985 UCSC:uc010ikb.3
            ArrayExpress:E3W980 Bgee:E3W980 Uniprot:E3W980
        Length = 1034

 Score = 161 (61.7 bits), Expect = 3.4e-11, Sum P(4) = 3.4e-11
 Identities = 57/203 (28%), Positives = 95/203 (46%)

Query:   493 PAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
             P +K  +  GVA HH+G     +  +EE +  G++ +   T TLAAG+N+PAR  +L   
Sbjct:   563 PVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVIL--- 619

Query:   552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP--- 608
              +     +  L  N+  QM GRAGR GID  G  +L+    +  ++  +L+   +E    
Sbjct:   620 -RAPYVAKEFLKRNQYKQMIGRAGRAGIDTIGESILILQEKD-KQQVLELITKPLENCYS 677

Query:   609 -LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV--EQSFGNYVGS 665
              LV +FT     +   L G K+   +   DD+     G      +K++  E+S       
Sbjct:   678 HLVQEFTKGIQTLFLSLIGLKI---ATNLDDIYHFMNGTFFGVQQKVLLKEKSLWEITVE 734

Query:   666 NVMLAAKDELCKIQKETDVLTSE 688
             ++    +  L  +QK+T +  SE
Sbjct:   735 SLRYLTEKGL--LQKDT-IYKSE 754

 Score = 96 (38.9 bits), Expect = 3.4e-11, Sum P(4) = 3.4e-11
 Identities = 32/100 (32%), Positives = 49/100 (49%)

Query:   277 IVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 333
             IV +++H + + SRG   E     I+Y  K  QII +SAT+ N ++L  ++     + E 
Sbjct:   393 IVQEKLHMIGEGSRGATLEMTLAKILYTSKTTQIIGMSATLNNVEDLQKFL-----QAEY 447

Query:   334 ITSSRRPVPLTWYFSTKTALLPLLDEKGKH-MNRKLSLNY 372
              TS  RPV L  Y      +  + D K ++ M     LNY
Sbjct:   448 YTSQFRPVELKEYLKINDTIYEV-DSKAENGMTFSRLLNY 486

 Score = 46 (21.3 bits), Expect = 3.4e-11, Sum P(4) = 3.4e-11
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query:   176 SVVVSAPTSSGKTLI 190
             +++ S PTS GKTL+
Sbjct:   354 NLIYSLPTSGGKTLV 368

 Score = 37 (18.1 bits), Expect = 3.4e-11, Sum P(4) = 3.4e-11
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query:   969 LTKRIEQIEPSGWKEFLRISNVIHET--RALD 998
             L  R +Q+  +G+K  + ++N   E   R +D
Sbjct:   953 LEGRAKQLYSAGYKSLMHLANANPEVLVRTID 984


>WB|WBGene00020964 [details] [associations]
            symbol:polq-1 species:6239 "Caenorhabditis elegans"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
            DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR001098
            InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
            InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
            PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
            SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
            GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887 KO:K02349
            EMBL:FO081687 EMBL:FO081686 RefSeq:NP_498250.3
            ProteinModelPortal:A0FLQ6 PaxDb:A0FLQ6 EnsemblMetazoa:W03A3.2
            GeneID:175810 KEGG:cel:CELE_W03A3.2 UCSC:W03A3.2 CTD:175810
            WormBase:W03A3.2 InParanoid:A0FLQ6 OMA:EASIPEI NextBio:889766
            Uniprot:A0FLQ6
        Length = 1661

 Score = 135 (52.6 bits), Expect = 3.7e-11, Sum P(4) = 3.7e-11
 Identities = 62/296 (20%), Positives = 135/296 (45%)

Query:   133 EKLCNEVKEFGNEMIDV---DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTL 189
             E  C   +   +++ID      + +++D++ID    +    F     ++ SAPTS+GK++
Sbjct:     3 EASCRFPEWVSSKIIDYYAEQNIKALFDWQIDVLNEA--RQF-EDQHLIFSAPTSAGKSI 59

Query:   190 IXXXXXXXXXXNQRRIFYTTPLKALSNQKFREFRETFGDNNVGL--LTGDSAINREAQI- 246
             +            R++ +  P  +++ +K  + +  +  +++ +    G  A N    + 
Sbjct:    60 VAELLSWKVASTGRKVLFVLPYISVAREKLHQIQRCWRRDDISVCGFIGPQASNPNEWLG 119

Query:   247 LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWE----EIIIY-- 300
              + T E   ++  +++    SE    ++ +IV+DE+H + D SRG   E    +++++  
Sbjct:   120 AVCTIEKAASLTNRAL----SEDWFEEIGMIVVDEMHMVFDSSRGAHIEHMLSKVLLWNQ 175

Query:   301 -CPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDE 359
                ++V+II +SAT+     +  W+    G  ++  +  RP+ L  +    + L    D 
Sbjct:   176 SALEKVRIIGMSATIPELYRIGKWLD---G-AKVFEARFRPIVLQNHIVIGSELRKSGDN 231

Query:   360 KGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSK 415
             K   + R+ S + L L T E            +S+  A+  + NI + F  H+++K
Sbjct:   232 K---VLREFSEDPLILLTEESFRRNSQTLVMISSKLDAEKTALNIASRF--HEINK 282

 Score = 133 (51.9 bits), Expect = 3.7e-11, Sum P(4) = 3.7e-11
 Identities = 35/88 (39%), Positives = 46/88 (52%)

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
             GVA HHAG     +  IE  F+   + ++ AT TLA+G+N+PA   ++    K    G  
Sbjct:   322 GVAYHHAGLTMEERECIELGFREKNIVILVATSTLASGVNLPAERVLI----KAQPRGPS 377

Query:   561 QLTSNELFQMAGRAGRRGIDNRGHVVLV 588
              LTS    QM GRAGR G   RG   L+
Sbjct:   378 ALTSLNYRQMVGRAGRTGHATRGETYLL 405

 Score = 44 (20.5 bits), Expect = 3.7e-11, Sum P(4) = 3.7e-11
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query:   647 SLEEARKLVEQSFGNYVGSNVML-AAKDELCK 677
             S+E+A K+++  F  + G    +   K+++CK
Sbjct:  1515 SIEDAEKMLKAFFAMFPGVRSYINETKEKVCK 1546

 Score = 44 (20.5 bits), Expect = 4.7e-11, Sum P(4) = 4.7e-11
 Identities = 17/72 (23%), Positives = 34/72 (47%)

Query:  1044 ASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLE-LQEKHGVEIP----CCL 1098
             A L+ E   +++++    +   +  + NVI+V  E  S+FL  L +++ +  P     C 
Sbjct:  1187 AFLIFEKFGIKIFR--LKVVRIAAYLNNVIDVEQEENSNFLPILMDRYSILDPEIRKTCS 1244

Query:  1099 DSQFSGMVEAWA 1110
              S     VE ++
Sbjct:  1245 SSLHKAAVEVYS 1256

 Score = 38 (18.4 bits), Expect = 3.7e-11, Sum P(4) = 3.7e-11
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query:   622 NLLAGA-------KVM-HLSNESDDMKALQAGRSLEE 650
             NLL GA       +V+ HLSN+S+ +  + + R L E
Sbjct:  1443 NLLIGADYKQLELRVLAHLSNDSNLVNLITSDRDLFE 1479

 Score = 37 (18.1 bits), Expect = 4.7e-11, Sum P(4) = 4.7e-11
 Identities = 6/22 (27%), Positives = 13/22 (59%)

Query:  1139 LLAQIPKLPDVDQRLQKNAVDA 1160
             +L  +P L +V +R+  + + A
Sbjct:  1412 ILTSVPNLQNVPKRISSDGMSA 1433

 Score = 37 (18.1 bits), Expect = 2.3e-10, Sum P(4) = 2.3e-10
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query:   759 KDSEGVEHSVPAVYLGKFDSLDSSKLKNM 787
             K  E +E ++  +  GKF+   S+++ N+
Sbjct:  1305 KQIENLEENIWRLAYGKFNIHSSNEVANV 1333


>TAIR|locus:2037375 [details] [associations]
            symbol:emb1507 "embryo defective 1507" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0009793 "embryo development ending in seed dormancy"
            evidence=NAS] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0016020
            "membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007126
            "meiosis" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
            process" evidence=RCA] [GO:0033044 "regulation of chromosome
            organization" evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00382 SMART:SM00490 EMBL:CP002684 GO:GO:0005829
            GO:GO:0005524 GO:GO:0005730 GO:GO:0016020 GO:GO:0003676
            GO:GO:0030529 EMBL:AC007369 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
            SMART:SM00973 HOGENOM:HOG000157749 KO:K12854 OMA:KWDVLSR
            GO:GO:0008026 ProtClustDB:CLSN2679454 IPI:IPI00536616 PIR:E86342
            RefSeq:NP_001185050.1 RefSeq:NP_173520.1 UniGene:At.11196
            UniGene:At.21273 ProteinModelPortal:Q9SYP1 SMR:Q9SYP1 IntAct:Q9SYP1
            STRING:Q9SYP1 PRIDE:Q9SYP1 ProMEX:Q9SYP1 EnsemblPlants:AT1G20960.1
            EnsemblPlants:AT1G20960.2 GeneID:838690 KEGG:ath:AT1G20960
            TAIR:At1g20960 InParanoid:Q9SYP1 PhylomeDB:Q9SYP1
            Genevestigator:Q9SYP1 Uniprot:Q9SYP1
        Length = 2171

 Score = 166 (63.5 bits), Expect = 4.4e-11, Sum P(4) = 4.4e-11
 Identities = 45/140 (32%), Positives = 72/140 (51%)

Query:   486 YPDAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 544
             + D V+   +K +L  G A HHAG     +  +E LF +G V+V+ +T TLA G+N+PA 
Sbjct:   789 HEDIVKNSDLKDILPYGFAIHHAGLSRGDREIVETLFSQGHVQVLVSTATLAWGVNLPAH 848

Query:   545 TAVLSSLSK-RTASGR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 602
             T ++          G  ++L+  ++ QM GRAGR   D  G  +++ T Y   +    L+
Sbjct:   849 TVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIII-TGYSELQYYLSLM 907

Query:   603 FAGVEPLVSQFTASYGMVLN 622
                + P+ SQF +     LN
Sbjct:   908 NEQL-PIESQFISKLADQLN 926

 Score = 150 (57.9 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
 Identities = 56/188 (29%), Positives = 89/188 (47%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXXXN----QRRIFYTTPLKALSNQKFREFRETFGDNNV 231
             +V+V+APT SGKT+                  R+ Y  PL+A++ ++FR +   FG   +
Sbjct:  1368 NVLVAAPTGSGKTICAEFAILRNHHEGPDATMRVVYIAPLEAIAKEQFRIWEGKFG-KGL 1426

Query:   232 GL----LTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283
             GL    LTG++A++     + QI+I T E    +  +          +  V + ++DE+H
Sbjct:  1427 GLRVVELTGETALDLKLLEKGQIIISTPEKWDALSRRW----KQRKYVQQVSLFIVDELH 1482

Query:   284 YLSDISRGTVWEEIII---YCPKEV----QIICLSATVANADELAGWIG-QIHGKTELIT 335
              +     G V E I+    Y   +V    +I+ LS ++ANA +L  WIG   HG      
Sbjct:  1483 LIGG-QHGPVLEVIVSRMRYISSQVINKIRIVALSTSLANAKDLGEWIGASSHGLFNF-P 1540

Query:   336 SSRRPVPL 343
                RPVPL
Sbjct:  1541 PGVRPVPL 1548

 Score = 108 (43.1 bits), Expect = 4.4e-11, Sum P(4) = 4.4e-11
 Identities = 45/155 (29%), Positives = 77/155 (49%)

Query:   204 RIFYTTPLKALSNQKFREFRETFGDNNVGL--LTGDSAIN----REAQILIMTTEILRNM 257
             +I Y  P+KAL  +          D  V +  L+GD ++      E QI++ T E    +
Sbjct:   561 KIVYVAPMKALVAEVVGNLSNRLKDYGVIVRELSGDQSLTGREIEETQIIVTTPEKWDII 620

Query:   258 LYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII------IYCPKE-VQIICL 310
               +S     ++     V ++++DE+H L D +RG V E I+      I   KE ++++ L
Sbjct:   621 TRKSGDRTYTQL----VRLLIIDEIHLLHD-NRGPVLESIVARTLRQIETTKENIRLVGL 675

Query:   311 SATVANADELAGWIGQIHGKTELITSSR--RPVPL 343
             SAT+ N +++A ++ ++  K  L    R  RPVPL
Sbjct:   676 SATLPNYEDVALFL-RVDLKKGLFKFDRSYRPVPL 709

 Score = 99 (39.9 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
 Identities = 44/181 (24%), Positives = 78/181 (43%)

Query:   438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG 497
             +++  PAI F+  R+        L   + +D  +  +  L        + + +RE  +K 
Sbjct:  1579 AKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSPDFLLGKLEELDPFVEQIREETLKE 1638

Query:   498 LL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
              L  G+   H G   + +  + +LF+ G ++V   + +L  G  + A   V+  +  +  
Sbjct:  1639 TLCHGIGYLHEGLSSLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLTAHLVVV--MGTQYY 1696

Query:   557 SGRIQLTSN----ELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVS 611
              GR    S+    +L QM GRA R  +DN G  V+    P +  E   K L+    P+ S
Sbjct:  1697 DGRENSHSDYPVPDLLQMMGRASRPLLDNAGKCVIFCHAPRK--EYYKKFLYEAF-PVES 1753

Query:   612 Q 612
             Q
Sbjct:  1754 Q 1754

 Score = 86 (35.3 bits), Expect = 6.4e-09, Sum P(4) = 6.4e-09
 Identities = 37/153 (24%), Positives = 71/153 (46%)

Query:   170 AFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQR-----------RIFYTTPLKALSNQK 218
             A  +  ++++ APT +GKT +            R           +I Y  P+KAL  + 
Sbjct:   516 ALFKAENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALVAEV 575

Query:   219 FREFRETFGDNNVGL--LTGDSAIN-REAQI--LIMTTEILRNMLYQSVGMVSSESGLFD 273
                      D  V +  L+GD ++  RE +   +I+TT    +++ +  G   + + L  
Sbjct:   576 VGNLSNRLKDYGVIVRELSGDQSLTGREIEETQIIVTTPEKWDIITRKSGD-RTYTQL-- 632

Query:   274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 306
             V ++++DE+H L D +RG V E I+    ++++
Sbjct:   633 VRLLIIDEIHLLHD-NRGPVLESIVARTLRQIE 664

 Score = 42 (19.8 bits), Expect = 4.4e-11, Sum P(4) = 4.4e-11
 Identities = 15/69 (21%), Positives = 31/69 (44%)

Query:  1020 LWLAMV-LRNKILLDLKPAQLAAVCASLVSEGIKV-RLWKNNSSIYEPSTTVINVINVLD 1077
             L L +V L  +  LDLK  +   +  S   +   + R WK    + + S  +++ ++++ 
Sbjct:  1426 LGLRVVELTGETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIG 1485

Query:  1078 EHRSSFLEL 1086
                   LE+
Sbjct:  1486 GQHGPVLEV 1494

 Score = 39 (18.8 bits), Expect = 8.6e-11, Sum P(4) = 8.6e-11
 Identities = 7/27 (25%), Positives = 16/27 (59%)

Query:  1068 TVINVINVLDEHRSSFLELQEKHGVEI 1094
             TV +++ + DE R   L++ +   ++I
Sbjct:  2011 TVFDLVEMEDEERQELLKMSDAQLLDI 2037

 Score = 37 (18.1 bits), Expect = 4.4e-11, Sum P(4) = 4.4e-11
 Identities = 15/67 (22%), Positives = 27/67 (40%)

Query:   812 VKPSYYVALGSDNTWYTFTEKWIKTVYRIG----FPNVALAQGDALPRETMSLLLDKGEM 867
             V+  Y + L     W    EK +     +G         L Q   L  + + + L+K ++
Sbjct:  1116 VRALYEIVL--KRGWAQLAEKALNLSKMVGKRMWSVQTPLRQFHGLSNDIL-MQLEKKDL 1172

Query:   868 LWEKLAD 874
             +WE+  D
Sbjct:  1173 VWERYYD 1179


>UNIPROTKB|E1BH78 [details] [associations]
            symbol:LOC100850262 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005682 "U5
            snRNP" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
            GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
            Pfam:PF02889 SMART:SM00611 SMART:SM00973
            GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
            CTD:23020 EMBL:DAAA02030116 IPI:IPI00695338 RefSeq:NP_001193092.1
            UniGene:Bt.7486 ProteinModelPortal:E1BH78 PRIDE:E1BH78
            Ensembl:ENSBTAT00000001130 GeneID:510529 KEGG:bta:510529
            NextBio:20869492 Uniprot:E1BH78
        Length = 2136

 Score = 158 (60.7 bits), Expect = 4.9e-11, Sum P(3) = 4.9e-11
 Identities = 43/131 (32%), Positives = 71/131 (54%)

Query:   495 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
             +K LL  G A HHAG   + ++ +E+LF    ++V+ +T TLA G+N+PA T ++     
Sbjct:   774 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 833

Query:   554 RTAS-GR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
              +   GR  +L + ++ QM GRAGR   D +G  +L+ T +   +    LL   + P+ S
Sbjct:   834 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI-TSHGELQYYLSLLNQQL-PIES 891

Query:   612 QFTASYGMVLN 622
             Q  +    +LN
Sbjct:   892 QMVSKLPDMLN 902

 Score = 148 (57.2 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
 Identities = 51/184 (27%), Positives = 92/184 (50%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXXX--NQRRIFYTTPLKALSNQKFREFRETFGDN---N 230
             +V V APT SGKT+             ++ R  Y TP++AL+ Q + ++ E F D     
Sbjct:  1345 NVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYEKFQDRLSKK 1404

Query:   231 VGLLTGDSAINRE----AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286
             V LLTG+++ + +      +++ T E   ++L +          + ++++ V+DEVH + 
Sbjct:  1405 VVLLTGETSTDLKLLGKGSVIVSTPEKW-DILSRRW---KQRKNVQNINLFVVDEVHLIG 1460

Query:   287 DISRGTVWEEI---IIYCPKEVQ----IICLSATVANADELAGWIGQIHGKTELITSSRR 339
                 G V E I   + Y   +++    I+ LS++++NA ++A W+G     T     + R
Sbjct:  1461 G-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVR 1519

Query:   340 PVPL 343
             PVPL
Sbjct:  1520 PVPL 1523

 Score = 115 (45.5 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
 Identities = 36/150 (24%), Positives = 66/150 (44%)

Query:   443 PAIWFIFNRRGCD-AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG-LLK 500
             P I F+ +R+     A+  L  C    + +        ++  I Y + + +  +K  LL 
Sbjct:  1558 PVIVFVPSRKQTRLTAIDILTTCAA--DIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLN 1615

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR- 559
             GV   H G  P+ +  +E+LF  G ++VV A+ +L  G+N+ A   ++            
Sbjct:  1616 GVGYLHEGLSPLERRLVEQLFSSGAIQVVVASRSLCWGLNVAAHLVIIMDTQYYNGKTHA 1675

Query:   560 -IQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
              +     ++ QM G A R   D+ G  V++
Sbjct:  1676 YVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1705

 Score = 107 (42.7 bits), Expect = 4.9e-11, Sum P(3) = 4.9e-11
 Identities = 56/208 (26%), Positives = 97/208 (46%)

Query:   162 KFQRSSIEAFLRGSSVVVSAPTSSGKT---LIXXXXXXXXXXNQR--------RIFYTTP 210
             K  R+++E      ++++ APT +GKT   L+          N          +I Y  P
Sbjct:   487 KLYRAALET---DENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 543

Query:   211 LKALSNQKFREFRE---TFGDNNVGLLTGDSAINRE----AQILIMTTEILRNMLYQSVG 263
             +++L  +    F +   T+G   V  LTGD  + +E     QI++ T E  +  +    G
Sbjct:   544 MRSLVQEMVGSFGKRLATYGIT-VAELTGDHQLCKEEISATQIIVCTPE--KWDIITRKG 600

Query:   264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC-------PKEVQIICLSATVAN 316
                + + L  V +++LDE+H L D  RG V E ++           ++V++I LSAT+ N
Sbjct:   601 GERTYTQL--VRLVILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN 657

Query:   317 ADELAGWIGQIHGKTEL-ITSSRRPVPL 343
              +++A ++     K      +S RPVPL
Sbjct:   658 YEDVATFLRVDPAKGLFYFDNSFRPVPL 685

 Score = 62 (26.9 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
 Identities = 31/125 (24%), Positives = 48/125 (38%)

Query:   349 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS-RKHADMNSNNIVTS 407
             T  AL+ +L E GKH+N   ++N        + P +        S  K        +   
Sbjct:   510 TNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAEL 569

Query:   408 FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL 467
              G HQL K  I+A   +Q+  ++ T          P  W I  R+G +     L    +L
Sbjct:   570 TGDHQLCKEEISA---TQI--IVCT----------PEKWDIITRKGGERTYTQLVRLVIL 614

Query:   468 DECEM 472
             DE  +
Sbjct:   615 DEIHL 619

 Score = 40 (19.1 bits), Expect = 4.9e-11, Sum P(3) = 4.9e-11
 Identities = 13/64 (20%), Positives = 28/64 (43%)

Query:  1024 MVLRNKILLDLKPAQLAAVCASLVSE-GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSS 1082
             ++L  +   DLK     +V  S   +  I  R WK   ++   +  V++ ++++      
Sbjct:  1406 VLLTGETSTDLKLLGKGSVIVSTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGP 1465

Query:  1083 FLEL 1086
              LE+
Sbjct:  1466 VLEV 1469

 Score = 39 (18.8 bits), Expect = 6.2e-11, Sum P(3) = 6.2e-11
 Identities = 6/27 (22%), Positives = 17/27 (62%)

Query:  1068 TVINVINVLDEHRSSFLELQEKHGVEI 1094
             +V +++ + DE R++ L+L +    ++
Sbjct:  1981 SVFDIMEMEDEERNALLQLSDSQIADV 2007


>UNIPROTKB|F1LNJ2 [details] [associations]
            symbol:Ascc3l1 "Protein Ascc3l1" species:10116 "Rattus
            norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR001650
            InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
            GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
            Pfam:PF02889 SMART:SM00611 SMART:SM00973
            GeneTree:ENSGT00640000091272 OMA:KWDVLSR GO:GO:0008026
            IPI:IPI00562876 PRIDE:F1LNJ2 Ensembl:ENSRNOT00000043895
            ArrayExpress:F1LNJ2 Uniprot:F1LNJ2
        Length = 2139

 Score = 158 (60.7 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
 Identities = 43/131 (32%), Positives = 71/131 (54%)

Query:   495 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
             +K LL  G A HHAG   + ++ +E+LF    ++V+ +T TLA G+N+PA T ++     
Sbjct:   774 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 833

Query:   554 RTAS-GR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
              +   GR  +L + ++ QM GRAGR   D +G  +L+ T +   +    LL   + P+ S
Sbjct:   834 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI-TSHGELQYYLSLLNQQL-PIES 891

Query:   612 QFTASYGMVLN 622
             Q  +    +LN
Sbjct:   892 QMVSKLPDMLN 902

 Score = 150 (57.9 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
 Identities = 53/184 (28%), Positives = 92/184 (50%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXXX--NQRRIFYTTPLKALSNQKFREFRETFGDN---N 230
             +V V APT SGKT+             ++ R  Y TP++AL+ Q + ++ E F D     
Sbjct:  1348 NVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK 1407

Query:   231 VGLLTGDSAINRE----AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286
             V LLTG+++ + +      I+I T E   ++L +          + ++++ V+DEVH + 
Sbjct:  1408 VVLLTGETSTDLKLLGKGNIIISTPEKW-DILSRRW---KQRKNVQNINLFVVDEVHLIG 1463

Query:   287 DISRGTVWEEI---IIYCPKEVQ----IICLSATVANADELAGWIGQIHGKTELITSSRR 339
                 G V E I   + Y   +++    I+ LS++++NA ++A W+G     T     + R
Sbjct:  1464 G-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVR 1522

Query:   340 PVPL 343
             PVPL
Sbjct:  1523 PVPL 1526

 Score = 116 (45.9 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
 Identities = 38/152 (25%), Positives = 72/152 (47%)

Query:   443 PAIWFIFNRRGCD-AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG-LLK 500
             P I F+ +R+     A+  L  C    + +        ++  I Y + + +  +K  LL 
Sbjct:  1561 PVIVFVPSRKQTRLTAIDILTTCAA--DIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLN 1618

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
             GV   H G  P+ +  +E+LF  G ++VV A+ +L  G+N+ A   ++  +  +  +G+I
Sbjct:  1619 GVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVII--MDTQYYNGKI 1676

Query:   561 QLTSN----ELFQMAGRAGRRGIDNRGHVVLV 588
                 +    ++ QM G A R   D+ G  V++
Sbjct:  1677 HAYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1708

 Score = 109 (43.4 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
 Identities = 58/208 (27%), Positives = 97/208 (46%)

Query:   162 KFQRSSIEAFLRGSSVVVSAPTSSGKT---LIXXXXXXXXXXNQR--------RIFYTTP 210
             K  R+++E      ++++ APT +GKT   L+          N          +I Y  P
Sbjct:   487 KLYRAALET---DENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 543

Query:   211 LKALSNQKFREFRE---TFGDNNVGLLTGDSAINRE----AQILIMTTEILRNMLYQSVG 263
             +++L  +    F +   T+G   V  LTGD  + +E     QI++ T E  +  +    G
Sbjct:   544 MRSLVQEMVGSFGKRLATYGIT-VAELTGDHQLCKEEISATQIIVCTPE--KWDIITRKG 600

Query:   264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC-------PKEVQIICLSATVAN 316
                + + L  V +IVLDE+H L D  RG V E ++           ++V++I LSAT+ N
Sbjct:   601 GERTYTQL--VRLIVLDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN 657

Query:   317 ADELAGWIGQIHGKTEL-ITSSRRPVPL 343
              +++A ++     K      +S RPVPL
Sbjct:   658 YEDVATFLRVDPAKGLFYFDNSFRPVPL 685

 Score = 61 (26.5 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
 Identities = 31/125 (24%), Positives = 48/125 (38%)

Query:   349 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS-RKHADMNSNNIVTS 407
             T  AL+ +L E GKH+N   ++N        + P +        S  K        +   
Sbjct:   510 TNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAEL 569

Query:   408 FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL 467
              G HQL K  I+A   +Q+  ++ T          P  W I  R+G +     L    +L
Sbjct:   570 TGDHQLCKEEISA---TQI--IVCT----------PEKWDIITRKGGERTYTQLVRLIVL 614

Query:   468 DECEM 472
             DE  +
Sbjct:   615 DEIHL 619

 Score = 38 (18.4 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
 Identities = 6/27 (22%), Positives = 17/27 (62%)

Query:  1068 TVINVINVLDEHRSSFLELQEKHGVEI 1094
             +V +++ + DE R++ L+L +    ++
Sbjct:  1984 SVFDIMEMEDEERNALLQLTDSQIADV 2010


>TAIR|locus:2089144 [details] [associations]
            symbol:RCK "ROCK-N-ROLLERS" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0003678 "DNA
            helicase activity" evidence=ISS] [GO:0007131 "reciprocal meiotic
            recombination" evidence=RCA;IMP] [GO:0051026 "chiasma assembly"
            evidence=IMP] [GO:0000911 "cytokinesis by cell plate formation"
            evidence=RCA] [GO:0006302 "double-strand break repair"
            evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
            [GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007067
            "mitosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
            [GO:0010564 "regulation of cell cycle process" evidence=RCA]
            [GO:0042138 "meiotic DNA double-strand break formation"
            evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
            evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 InterPro:IPR004179
            Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0007131
            GO:GO:0008026 GO:GO:0051026 KO:K15271 EMBL:AY822649 EMBL:AY960701
            IPI:IPI00517826 RefSeq:NP_189410.2 UniGene:At.53523
            ProteinModelPortal:Q5D892 SMR:Q5D892 STRING:Q5D892 PRIDE:Q5D892
            EnsemblPlants:AT3G27730.1 GeneID:822395 KEGG:ath:AT3G27730
            TAIR:At3g27730 HOGENOM:HOG000029933 InParanoid:Q5D892 OMA:IMTRRET
            PhylomeDB:Q5D892 ProtClustDB:CLSN2699173 Genevestigator:Q5D892
            Uniprot:Q5D892
        Length = 1133

 Score = 163 (62.4 bits), Expect = 5.1e-11, Sum P(4) = 5.1e-11
 Identities = 54/182 (29%), Positives = 86/182 (47%)

Query:   444 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELA--LKRFRILYPDAVREPAIKGLLKG 501
             A+ F   R+G   A Q L    +        ++    L+R R   P    +     +L+G
Sbjct:   277 ALVFCSTRKGAQEAAQKLAQTAMTYGYSNPFIKSREQLERLREASPMCSDKQMQSYILQG 336

Query:   502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK-RTASGR- 559
             V  H+ G     +S +E LF  G ++V+  T TLA GIN+PA T V+ S        G  
Sbjct:   337 VGYHNGGLCQKDRSLVEGLFLNGDIQVICTTNTLAHGINLPAHTVVIKSTQHFNKEKGHY 396

Query:   560 IQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTP--YEGAEECCKLLFAGVEP-LVSQF 613
             ++   + L QM+GRAGR   D+ G V+++   +T   YE     C+++ + + P L+   
Sbjct:   397 MEYDRSTLLQMSGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLPCLIEHL 456

Query:   614 TA 615
             TA
Sbjct:   457 TA 458

 Score = 94 (38.1 bits), Expect = 5.1e-11, Sum P(4) = 5.1e-11
 Identities = 43/147 (29%), Positives = 66/147 (44%)

Query:   216 NQKFREFR----ETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
             NQKF  +     E  GDN     T  +   ++A I++ T E    +    V   S   G 
Sbjct:   102 NQKFNSWGISCLELTGDNE----TYSTKNIQDADIILTTPEKFDAVSRYRV--TSGGLGF 155

Query:   272 F-DVDVIVLDEVHYLSDISRGTVWEEI-----IIYCPKE--------VQIICLSATVANA 317
             F D+ ++++DEVH L+D  RG   E I     I+    E        V+++ +SAT+ N 
Sbjct:   156 FSDIALVLIDEVHLLND-PRGAALEAIVSRLKILSSNHELRSSTLASVRLLAVSATIPNI 214

Query:   318 DELAGWIGQIHGKTELITSSRRPVPLT 344
             ++LA W+       +      RPV LT
Sbjct:   215 EDLAEWLKVPTAGIKRFGEEMRPVKLT 241

 Score = 65 (27.9 bits), Expect = 3.6e-08, Sum P(4) = 3.6e-08
 Identities = 26/102 (25%), Positives = 41/102 (40%)

Query:   154 SIYDFR-IDKFQRSSIE-AFLRGSSVVVSAPTSSGKTL-------------IXXXXXXXX 198
             S + FR  +  Q       F    ++++SAPT SGKT+             I        
Sbjct:    18 SAFSFRYFNSLQSECFPLCFHSDINMIISAPTGSGKTVLFELCILRLFSKSISKEGSFLH 77

Query:   199 XXNQRRIFYTTPLKALSNQKFREFRETFGDNNVGLL--TGDS 238
                  +  Y +P KAL  +K R++ + F    +  L  TGD+
Sbjct:    78 AKGALKTVYISPSKALVQEKLRDWNQKFNSWGISCLELTGDN 119

 Score = 44 (20.5 bits), Expect = 5.1e-11, Sum P(4) = 5.1e-11
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query:   727 LRRRMELKRFSALKDILKDFENGHLPFLCLQ 757
             +R +   + ++  K I KD    HL  LCLQ
Sbjct:   482 VRMKKNPENYAIKKGIPKDRVEKHLQELCLQ 512

 Score = 39 (18.8 bits), Expect = 5.1e-11, Sum P(4) = 5.1e-11
 Identities = 8/33 (24%), Positives = 19/33 (57%)

Query:   790 INDSFALNRLAQSNGDDYDTQDVKPSYYVALGS 822
             ++++  L + A +N  +Y +++  P YY  + S
Sbjct:   846 LHETLLLKK-ANNNKVNYKSENRMPQYYPPMAS 877

 Score = 37 (18.1 bits), Expect = 1.9e-05, Sum P(4) = 1.9e-05
 Identities = 19/77 (24%), Positives = 31/77 (40%)

Query:   121 PSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIY-------DFRIDKFQRSSIEAFL- 172
             P+  +  +W +V      +K FG EM  V     ++       DF  +K  ++ I   L 
Sbjct:   212 PNIEDLAEWLKVPTA--GIKRFGEEMRPVKLTTKVFGYAAAKNDFLFEKRLQNYIYDILM 269

Query:   173 ---RGSSVVVSAPTSSG 186
                +G S +V   T  G
Sbjct:   270 QYSKGKSALVFCSTRKG 286


>UNIPROTKB|O75643 [details] [associations]
            symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
            helicase" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC;IDA;TAS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IDA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0000354 "cis assembly of pre-catalytic
            spliceosome" evidence=IC] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IDA] [GO:0005682 "U5 snRNP" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] Reactome:REACT_71 InterPro:IPR001650
            InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
            GO:GO:0005654 Reactome:REACT_1675 GO:GO:0005682 GO:GO:0003676
            Orphanet:791 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
            SMART:SM00973 eggNOG:COG1204 HOVERGEN:HBG051896 KO:K12854
            OMA:KWDVLSR GO:GO:0008026 GO:GO:0000354 EMBL:AY572488 EMBL:AK024391
            EMBL:AK090671 EMBL:AB018331 EMBL:Z70200 EMBL:BC065924 EMBL:BC007577
            IPI:IPI00168235 IPI:IPI00420014 RefSeq:NP_054733.2
            UniGene:Hs.246112 PDB:2Q0Z PDB:4F91 PDB:4F92 PDB:4F93 PDBsum:2Q0Z
            PDBsum:4F91 PDBsum:4F92 PDBsum:4F93 ProteinModelPortal:O75643
            SMR:O75643 IntAct:O75643 MINT:MINT-5003904 STRING:O75643
            PhosphoSite:O75643 PaxDb:O75643 PeptideAtlas:O75643 PRIDE:O75643
            Ensembl:ENST00000323853 GeneID:23020 KEGG:hsa:23020 UCSC:uc002svu.3
            CTD:23020 GeneCards:GC02M096940 H-InvDB:HIX0002273 HGNC:HGNC:30859
            HPA:HPA029321 MIM:601664 MIM:610359 neXtProt:NX_O75643
            PharmGKB:PA164726004 InParanoid:O75643 OrthoDB:EOG4WM4SS
            PhylomeDB:O75643 ChiTaRS:SNRNP200 EvolutionaryTrace:O75643
            GenomeRNAi:23020 NextBio:43966 ArrayExpress:O75643 Bgee:O75643
            CleanEx:HS_SNRNP200 Genevestigator:O75643
            GermOnline:ENSG00000144028 Uniprot:O75643
        Length = 2136

 Score = 158 (60.7 bits), Expect = 6.2e-11, Sum P(3) = 6.2e-11
 Identities = 43/131 (32%), Positives = 71/131 (54%)

Query:   495 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
             +K LL  G A HHAG   + ++ +E+LF    ++V+ +T TLA G+N+PA T ++     
Sbjct:   774 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 833

Query:   554 RTAS-GR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
              +   GR  +L + ++ QM GRAGR   D +G  +L+ T +   +    LL   + P+ S
Sbjct:   834 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI-TSHGELQYYLSLLNQQL-PIES 891

Query:   612 QFTASYGMVLN 622
             Q  +    +LN
Sbjct:   892 QMVSKLPDMLN 902

 Score = 151 (58.2 bits), Expect = 5.2e-11, Sum P(3) = 5.2e-11
 Identities = 53/184 (28%), Positives = 92/184 (50%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXX--XNQRRIFYTTPLKALSNQKFREFRETFGDN---N 230
             +V V APT SGKT+             ++ R  Y TP++AL+ Q + ++ E F D     
Sbjct:  1345 NVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK 1404

Query:   231 VGLLTGDSAINRE----AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286
             V LLTG+++ + +      I+I T E   ++L +          + ++++ V+DEVH + 
Sbjct:  1405 VVLLTGETSTDLKLLGKGNIIISTPEKW-DILSRRW---KQRKNVQNINLFVVDEVHLIG 1460

Query:   287 DISRGTVWEEI---IIYCPKEVQ----IICLSATVANADELAGWIGQIHGKTELITSSRR 339
                 G V E I   + Y   +++    I+ LS++++NA ++A W+G     T     + R
Sbjct:  1461 G-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVR 1519

Query:   340 PVPL 343
             PVPL
Sbjct:  1520 PVPL 1523

 Score = 116 (45.9 bits), Expect = 5.2e-11, Sum P(3) = 5.2e-11
 Identities = 38/152 (25%), Positives = 72/152 (47%)

Query:   443 PAIWFIFNRRGCD-AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG-LLK 500
             P I F+ +R+     A+  L  C    + +        ++  I Y + + +  +K  LL 
Sbjct:  1558 PVIVFVPSRKQTRLTAIDILTTCAA--DIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLN 1615

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
             GV   H G  P+ +  +E+LF  G ++VV A+ +L  G+N+ A   ++  +  +  +G+I
Sbjct:  1616 GVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVII--MDTQYYNGKI 1673

Query:   561 QLTSN----ELFQMAGRAGRRGIDNRGHVVLV 588
                 +    ++ QM G A R   D+ G  V++
Sbjct:  1674 HAYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1705

 Score = 108 (43.1 bits), Expect = 6.2e-11, Sum P(3) = 6.2e-11
 Identities = 57/208 (27%), Positives = 97/208 (46%)

Query:   162 KFQRSSIEAFLRGSSVVVSAPTSSGKT---LIXXXXXXXXXXNQR--------RIFYTTP 210
             K  R+++E      ++++ APT +GKT   L+          N          +I Y  P
Sbjct:   487 KLYRAALET---DENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 543

Query:   211 LKALSNQKFREFRE---TFGDNNVGLLTGDSAINRE----AQILIMTTEILRNMLYQSVG 263
             +++L  +    F +   T+G   V  LTGD  + +E     QI++ T E  +  +    G
Sbjct:   544 MRSLVQEMVGSFGKRLATYGIT-VAELTGDHQLCKEEISATQIIVCTPE--KWDIITRKG 600

Query:   264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC-------PKEVQIICLSATVAN 316
                + + L  V +I+LDE+H L D  RG V E ++           ++V++I LSAT+ N
Sbjct:   601 GERTYTQL--VRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN 657

Query:   317 ADELAGWIGQIHGKTEL-ITSSRRPVPL 343
              +++A ++     K      +S RPVPL
Sbjct:   658 YEDVATFLRVDPAKGLFYFDNSFRPVPL 685

 Score = 62 (26.9 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
 Identities = 31/125 (24%), Positives = 48/125 (38%)

Query:   349 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS-RKHADMNSNNIVTS 407
             T  AL+ +L E GKH+N   ++N        + P +        S  K        +   
Sbjct:   510 TNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAEL 569

Query:   408 FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL 467
              G HQL K  I+A   +Q+  ++ T          P  W I  R+G +     L    +L
Sbjct:   570 TGDHQLCKEEISA---TQI--IVCT----------PEKWDIITRKGGERTYTQLVRLIIL 614

Query:   468 DECEM 472
             DE  +
Sbjct:   615 DEIHL 619

 Score = 38 (18.4 bits), Expect = 5.2e-11, Sum P(3) = 5.2e-11
 Identities = 6/27 (22%), Positives = 17/27 (62%)

Query:  1068 TVINVINVLDEHRSSFLELQEKHGVEI 1094
             +V +++ + DE R++ L+L +    ++
Sbjct:  1981 SVFDIMEMEDEERNALLQLTDSQIADV 2007


>DICTYBASE|DDB_G0270042 [details] [associations]
            symbol:ascc3l "U5 small nuclear ribonucleoprotein 200
            kDa helicase" species:44689 "Dictyostelium discoideum" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=ISS] [GO:0005681 "spliceosomal complex"
            evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
            SMART:SM00490 dictyBase:DDB_G0270042 GO:GO:0005524
            EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0008380
            GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
            SMART:SM00973 eggNOG:COG1204 KO:K12854 OMA:KWDVLSR GO:GO:0008026
            RefSeq:XP_646493.1 ProteinModelPortal:Q55CI8 STRING:Q55CI8
            EnsemblProtists:DDB0233131 GeneID:8617455 KEGG:ddi:DDB_G0270042
            InParanoid:Q55CI8 ProtClustDB:CLSZ2431432 Uniprot:Q55CI8
        Length = 2237

 Score = 157 (60.3 bits), Expect = 7.3e-11, Sum P(3) = 7.3e-11
 Identities = 34/106 (32%), Positives = 58/106 (54%)

Query:   490 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
             ++   +K LL  G+  HHAG     +S +E+LF    ++V+ +T TLA G+N+PA T ++
Sbjct:   839 IQNAELKDLLPYGIGIHHAGLSRSDRSLVEDLFGDNRIQVLISTATLAWGVNLPAHTVII 898

Query:   549 SSLS-KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593
                       G  +L+  ++ QM GRAGR   D  G  +++ + +E
Sbjct:   899 KGTQIYNPEKGWCELSPLDVTQMLGRAGRPPFDKEGEGIIITSQHE 944

 Score = 121 (47.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 45/184 (24%), Positives = 89/184 (48%)

Query:   179 VSAPTSSGKTLIXXXXXXX-XXXNQR-RIFYTTPLKALSNQKFREFRETFGDNN-VGL-- 233
             +SAPT+SGKT+            N + ++ Y  P++ L++ + +++   FG  +  GL  
Sbjct:  1418 ISAPTNSGKTVCAEIALIRCFKQNPKAKVVYLAPMQDLASVRLKDWSNKFGVKSPFGLVV 1477

Query:   234 --LTGDSAINREAQILIMTTEILRNMLYQSV--GMVSSESGLFDVDVIVLDEVHYLSDIS 289
               LTGD+  + +  IL  +  I+ N     +          L  ++++++DE+H +    
Sbjct:  1478 SDLTGDAVTDNK--ILDRSNIIVTNCEKWDILSRKWKQRKALQSINLLIVDELHLIGGEY 1535

Query:   290 RGTVWEEIII----YCPKE----VQIICLSATVANADELAGWIGQIHGKTELITSSRRPV 341
               T+  EI++    Y   +    +++I LS+++ANA +L  WIG           + RP+
Sbjct:  1536 GPTM--EIVVSRMRYISTQTGNALRVIALSSSIANARDLVLWIGATPQTCYNFHPNVRPI 1593

Query:   342 PLTW 345
             P+ +
Sbjct:  1594 PVEY 1597

 Score = 108 (43.1 bits), Expect = 7.3e-11, Sum P(3) = 7.3e-11
 Identities = 43/153 (28%), Positives = 76/153 (49%)

Query:   204 RIFYTTPLKALSNQKFREFRETFGDNNVGL--LTGDSAI-NR---EAQILIMTTEILRNM 257
             +I Y  P+K+L  +    F +      + +  LTGD ++ N+   E QI++ T E    +
Sbjct:   609 KIVYIAPMKSLVQEMVGNFSKRLKSYGIVVNELTGDQSLTNKQISETQIIVTTPEKWDII 668

Query:   258 LYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII------IYCPKE-VQIICL 310
               +S     ++     V +I++DE+H L D  RG V E I+      I   ++ V+++ L
Sbjct:   669 TRKSGDRAYTQL----VKLIIIDEIHLLHD-ERGPVLECIVARTLRMIESTQQMVRLVGL 723

Query:   311 SATVANADELAGWIGQIHGKTELITSSRRPVPL 343
             SAT+ N +++A ++           SS RP+PL
Sbjct:   724 SATLPNYEDVATFLRVEPDGVFYFDSSYRPIPL 756

 Score = 97 (39.2 bits), Expect = 9.4e-10, Sum P(3) = 9.4e-10
 Identities = 53/210 (25%), Positives = 94/210 (44%)

Query:   119 PAPSWREEFK-WQRVEKLCNEVKEFG-NE-MIDVDELA--SIYDFR------IDKFQRSS 167
             P  S RE++K ++ +         F  NE +I ++EL   S   F       +++ Q   
Sbjct:   500 PKGSKREQYKGFEEIHVPARANPPFNPNERLISIEELPEWSRLPFEESGVKSLNRVQSKL 559

Query:   168 IE-AFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQR------------RIFYTTPLKAL 214
              + AF   +++++SAPTSSGKT +            R            +I Y  P+K+L
Sbjct:   560 FDCAFKTDNNLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSL 619

Query:   215 SNQKFREFRETFGDNNVGL--LTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG-- 270
               +    F +      + +  LTGD ++  +    I  T+I+     +   +++ +SG  
Sbjct:   620 VQEMVGNFSKRLKSYGIVVNELTGDQSLTNKQ---ISETQIIVTTP-EKWDIITRKSGDR 675

Query:   271 LFD--VDVIVLDEVHYLSDISRGTVWEEII 298
              +   V +I++DE+H L D  RG V E I+
Sbjct:   676 AYTQLVKLIIIDEIHLLHD-ERGPVLECIV 704

 Score = 90 (36.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 30/96 (31%), Positives = 52/96 (54%)

Query:   486 YPDAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI-NMPA 543
             Y + V   A+K  L+ GVA +H G     +  +E LF+ G ++V+ AT ++A  + N+ A
Sbjct:  1673 YLEDVDSFALKQSLQMGVAFYHDGLTERERRVVEILFRSGSIRVLIATHSVAWLLDNVFA 1732

Query:   544 RTAVL--SSLSKRTASGRIQLTSNELFQMAGRAGRR 577
             +  V+  + L +      I    N++ QM GRAG++
Sbjct:  1733 QLVVIMGTQLYQGKDIRYIDYPINDILQMIGRAGKQ 1768

 Score = 39 (18.8 bits), Expect = 7.3e-11, Sum P(3) = 7.3e-11
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query:   809 TQDVKPSYYVALGSDNTW 826
             +Q + P YYV + SD+ W
Sbjct:  1329 SQPLPPQYYVRVISDH-W 1345


>ZFIN|ZDB-GENE-081105-64 [details] [associations]
            symbol:si:ch211-251j10.5 "si:ch211-251j10.5"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00382 SMART:SM00490 ZFIN:ZDB-GENE-081105-64 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
            HOVERGEN:HBG051896 HOGENOM:HOG000157749
            GeneTree:ENSGT00640000091272 KO:K12854 GO:GO:0008026 EMBL:BX640472
            EMBL:CR376723 IPI:IPI00608684 RefSeq:NP_001116729.1
            UniGene:Dr.32574 SMR:B0S754 Ensembl:ENSDART00000109885
            GeneID:799690 KEGG:dre:799690 NextBio:20933935 Uniprot:B0S754
        Length = 2134

 Score = 160 (61.4 bits), Expect = 9.8e-11, Sum P(3) = 9.8e-11
 Identities = 43/131 (32%), Positives = 71/131 (54%)

Query:   495 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
             +K LL  G A HHAG   + ++ +E+LF    ++V+ +T TLA G+N+PA T ++     
Sbjct:   771 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQV 830

Query:   554 RTAS-GR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
              +   GR  +L + ++ QM GRAGR   D++G  +L+ T +   +    LL   + P+ S
Sbjct:   831 YSPEKGRWTELGALDILQMLGRAGRPQYDSKGEGILI-TSHGELQYYLSLLNQQL-PIES 888

Query:   612 QFTASYGMVLN 622
             Q       +LN
Sbjct:   889 QMVGKLADMLN 899

 Score = 148 (57.2 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
 Identities = 51/183 (27%), Positives = 92/183 (50%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXXXN--QRRIFYTTPLKALSNQKFREFRETFGDN---N 230
             +V V APT SGKT+           +  + R  Y TP++AL+ Q F ++ + F +N    
Sbjct:  1341 NVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPMEALAEQVFLDWHQKFQENLNKK 1400

Query:   231 VGLLTGDSAINREAQ---ILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287
             V LLTG+++ + +      +I++T    ++L +          + +V + ++DEVH +  
Sbjct:  1401 VVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRW---KQRKNVQNVSLFIIDEVHLIGG 1457

Query:   288 ISRGTVWEEI---IIYCPKEVQ----IICLSATVANADELAGWIGQIHGKTELITSSRRP 340
                G V E I   + Y   +++    I+ LS++++NA ++A W+G     T     + RP
Sbjct:  1458 -DNGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSTTATFNFHPNVRP 1516

Query:   341 VPL 343
             VPL
Sbjct:  1517 VPL 1519

 Score = 103 (41.3 bits), Expect = 9.8e-11, Sum P(3) = 9.8e-11
 Identities = 53/193 (27%), Positives = 87/193 (45%)

Query:   176 SVVVSAPTSSGKT---LIXXXXXXXXXXNQR--------RIFYTTPLKALSNQKFREFRE 224
             +++V APT +GKT   L+          N          +I Y  P+++L  +    F +
Sbjct:   495 NLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVADFKIIYIAPMRSLVQEMVGSFGK 554

Query:   225 TFGDNN--VGLLTGDSAINRE----AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIV 278
                     V  LTGD  + +E     QI++ T E  +  +    G   + + L  V +I+
Sbjct:   555 RLASYGIIVSELTGDHQLCKEEINATQIIVCTPE--KWDIITRKGGERTYTQL--VRLII 610

Query:   279 LDEVHYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQIHGKT 331
             +DE+H L D  RG V E +I           ++V++I LSAT+ N +++A  +     K 
Sbjct:   611 IDEIHLLHD-DRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVATCLRVDPSKG 669

Query:   332 EL-ITSSRRPVPL 343
                  +S RPVPL
Sbjct:   670 LFYFDNSFRPVPL 682

 Score = 99 (39.9 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
 Identities = 27/95 (28%), Positives = 47/95 (49%)

Query:   498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
             L  GV   H G  P  +  +E LF  G ++VV A+ +L  G N+ A   ++  +  +  +
Sbjct:  1609 LSNGVGYLHEGLSPTERRIVEHLFTSGAIQVVVASRSLCWGTNISAHLVIV--MDTQYYN 1666

Query:   558 GRIQLTSN----ELFQMAGRAGRRGIDNRGHVVLV 588
             G+I    +    ++ QM G+A R   D+ G  V++
Sbjct:  1667 GKIHAYVDYPIYDVLQMVGKANRPLQDDEGRCVIM 1701

 Score = 71 (30.1 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
 Identities = 32/125 (25%), Positives = 50/125 (40%)

Query:   349 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSF 408
             T  AL+ +L E GKH+N   ++N        + P +        S      +   IV+  
Sbjct:   507 TNVALMAMLREIGKHINMDGTINVADFKIIYIAPMRSLVQEMVGSFGKRLASYGIIVSEL 566

Query:   409 -GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL 467
              G HQL K  INA   +Q+  ++ T          P  W I  R+G +     L    ++
Sbjct:   567 TGDHQLCKEEINA---TQI--IVCT----------PEKWDIITRKGGERTYTQLVRLIII 611

Query:   468 DECEM 472
             DE  +
Sbjct:   612 DEIHL 616

 Score = 39 (18.8 bits), Expect = 9.8e-11, Sum P(3) = 9.8e-11
 Identities = 13/64 (20%), Positives = 27/64 (42%)

Query:  1024 MVLRNKILLDLKPAQLAAVCASLVSE-GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSS 1082
             ++L  +   DLK      +  S   +  I  R WK   ++   S  +I+ ++++      
Sbjct:  1402 VLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQRKNVQNVSLFIIDEVHLIGGDNGP 1461

Query:  1083 FLEL 1086
              LE+
Sbjct:  1462 VLEV 1465


>FB|FBgn0263599 [details] [associations]
            symbol:l(3)72Ab "lethal (3) 72Ab" species:7227 "Drosophila
            melanogaster" [GO:0030532 "small nuclear ribonucleoprotein complex"
            evidence=ISS] [GO:0005682 "U5 snRNP" evidence=ISS] [GO:0003724 "RNA
            helicase activity" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
            GO:GO:0007067 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
            GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
            eggNOG:COG1204 GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR
            GO:GO:0004004 GO:GO:0000381 EMBL:BT016121 EMBL:AY069270
            RefSeq:NP_648818.3 UniGene:Dm.973 ProteinModelPortal:Q9VUV9
            SMR:Q9VUV9 IntAct:Q9VUV9 STRING:Q9VUV9 PaxDb:Q9VUV9 PRIDE:Q9VUV9
            EnsemblMetazoa:FBtr0075527 GeneID:39737 KEGG:dme:Dmel_CG5931
            FlyBase:FBgn0036548 InParanoid:Q9VUV9 OrthoDB:EOG4S4MWW
            PhylomeDB:Q9VUV9 GenomeRNAi:39737 NextBio:815125 Bgee:Q9VUV9
            GermOnline:CG5931 Uniprot:Q9VUV9
        Length = 2142

 Score = 192 (72.6 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
 Identities = 101/410 (24%), Positives = 178/410 (43%)

Query:   237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEE 296
             D  IN +    I+    +++++ + VG        +++ V  L   H L+         +
Sbjct:   528 DGTINAQ-DFKIIYVAPMKSLVQEMVGNFGRRLACYNLTVSELTGDHQLTREQIAAT--Q 584

Query:   297 IIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPL 356
             +I+  P++  II           L   +  I  +  L+   R PV L    +     +  
Sbjct:   585 VIVCTPEKWDIITRKGGERTFVSLVRLV--IIDEIHLLHDERGPV-LEALVARTIRNIET 641

Query:   357 LDEKGKHMNRKLSL-NYLQLSTS-EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLS 414
               E+ + +    +L NY  ++T   VKP  D G        + D NS   V S  Q  + 
Sbjct:   642 TQEEVRLVGLSATLPNYQDVATFLRVKP--DKGLF------YFD-NSYRPV-SLEQQYIG 691

Query:   415 KNSINAIRRSQVPQVI---DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECE 471
                  A++R QV   I    T+ H     +L    F+ +R+      + + D  L  +  
Sbjct:   692 VTEKKALKRFQVMNEIVYEKTMEHAGRNQVLV---FVHSRKETGKTARAVRDMCLEQDTL 748

Query:   472 MSEVELALKRFRILYPDA--VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKV 528
              S ++       +L  +A  V+   +K LL  G A HHAG   + ++ +E+LF    ++V
Sbjct:   749 GSFLKEGSASMEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQV 808

Query:   529 VFATETLAAGINMPARTAVLSSLSK-RTASGR-IQLTSNELFQMAGRAGRRGIDNRGHVV 586
             + +T TLA G+N+PA T ++          GR ++L++ ++ QM GRAGR   D +G  +
Sbjct:   809 LVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGI 868

Query:   587 LVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN--LLAGAKVMHLSN 634
             L+ T +   +    LL   + P+ SQF +    +LN  ++ G  V HL +
Sbjct:   869 LI-TNHSELQFYLSLLNQQL-PIESQFISKLPDMLNAEIVLGT-VQHLQD 915

 Score = 115 (45.5 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
 Identities = 60/211 (28%), Positives = 94/211 (44%)

Query:   154 SIYDFRIDKFQRSSIEAF--LRGS--SVVVSAPTSSGKTLIXXXXXXXXXXNQR--RIFY 207
             S Y  R  +F     + F  +  S  +V V APT SGK  I           Q   R  Y
Sbjct:  1319 SFYSQRFPQFNPIQTQVFNAVYNSDENVFVGAPTGSGKMTIAEFAIMRLFTTQSDARCVY 1378

Query:   208 TTPLKALSNQKFREFRETFG--DNNVGLLTGDSAIN----REAQILIMTTE---ILRNML 258
                 +AL++  F ++   FG  D  V  LTG++  +     + Q++I T +   +L    
Sbjct:  1379 LVSEEALADLVFADWHSKFGSLDIKVVKLTGETGTDLKLIAKGQLVITTADKWDVLSRRW 1438

Query:   259 YQ--SVGMVSSESGLFDVDVIVL---DEVHYLSDI-SRGTVWEEIIIYCPKEVQIICLSA 312
              Q  +V +V+    LF VD + L   +E   L  + SR      I     K+++I+ LSA
Sbjct:  1439 KQRKNVQLVN----LFIVDELQLVGGEEGPVLEIVCSR---MRYISSQIEKQIRIVALSA 1491

Query:   313 TVANADELAGWIGQIHGKTELITSSRRPVPL 343
             ++ +A ++A W+G     T     S RP+PL
Sbjct:  1492 SLTDARDVAQWLGCNPNATFNFHPSVRPIPL 1522

 Score = 74 (31.1 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
 Identities = 24/93 (25%), Positives = 37/93 (39%)

Query:   498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
             L +GVA  H G        +E+LF  G V+V   +  L  G+++ A   ++         
Sbjct:  1612 LAQGVAYLHEGLSASDHRLVEQLFDSGAVQVAVISRDLCWGMSISAHLVIIMDTQFYNGK 1671

Query:   558 GRI--QLTSNELFQMAGRAGRRGIDNRGHVVLV 588
                       ++ QM GRA R   D     VL+
Sbjct:  1672 NHSYEDYPITDVLQMIGRANRPNEDADAKCVLM 1704

 Score = 57 (25.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
 Identities = 34/156 (21%), Positives = 67/156 (42%)

Query:   678 IQKETDVLTSE--ISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKR 735
             IQ   DVL+S   +S      +  +++++A + +       LK    F  E+ +R   K+
Sbjct:  1927 IQACVDVLSSNGWLSPAVAAMELAQMVTQAMWSK----DSYLKQLPHFSPEIVKRCTEKK 1982

Query:   736 FSALKDI--LKDFENGHLPFLC-LQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 792
                + DI  L+D +   L  L  LQ  D     +  P + L  ++ +D  ++ + +++N 
Sbjct:  1983 IETVFDIMELEDEDRTRLLQLSDLQMADVARFCNRYPNIELN-YEVVDKDRINSGSTVNV 2041

Query:   793 SFALNRLAQSNGD---DYDTQDVKPSYYVALGSDNT 825
                L R  +  G     +  Q  +  ++V +G   T
Sbjct:  2042 VVQLEREDEVTGPVIAPFFPQKREEGWWVVIGDPKT 2077

 Score = 44 (20.5 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
 Identities = 15/55 (27%), Positives = 28/55 (50%)

Query:  1053 VRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVE 1107
             +R+ +N  ++Y  S   I    +L++HR+  L     H     CCL+   SG+++
Sbjct:   927 IRMLRN-PTLYGVSHDAIKADPLLEQHRADLL-----HTAA--CCLER--SGLIK 971


>ZFIN|ZDB-GENE-040724-232 [details] [associations]
            symbol:si:rp71-1p14.5 "si:rp71-1p14.5" species:7955
            "Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
            InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
            InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
            PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
            SMART:SM00490 ZFIN:ZDB-GENE-040724-232 GO:GO:0005524 GO:GO:0003677
            GO:GO:0006260 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0003887 EMBL:CU928848
            EMBL:CU695000 IPI:IPI00492363 Ensembl:ENSDART00000065556
            Uniprot:F1Q4P4
        Length = 2576

 Score = 157 (60.3 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
 Identities = 40/111 (36%), Positives = 63/111 (56%)

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
             GVA HHAG     +  +E  F++G ++V+ AT TL++G+N+PAR  ++ +      +G +
Sbjct:   615 GVAFHHAGLTFDERDILEGAFRQGYIRVLAATSTLSSGVNLPARRVIIRT---PVFNGHL 671

Query:   561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
              L      QM GRAGR+G+D  G  VLV    E A+    L+   ++P+ S
Sbjct:   672 -LDILTYKQMVGRAGRKGVDTIGESVLVCKEAERAKGM-SLIQGSLKPISS 720

 Score = 97 (39.2 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
 Identities = 32/133 (24%), Positives = 58/133 (43%)

Query:   172 LRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQR-RIFYTTPLKALSNQKFREFRETFGDNN 230
             L G ++V SAPTS+GKTL+            R +  +  P  +++ +K    +  F +  
Sbjct:   313 LEGQNLVYSAPTSAGKTLVSELLILKRVLETRQKAMFILPFVSVAREKMFYLQNVFQEAG 372

Query:   231 V---GLLTGDSAIN--REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285
             +   G +   SA        + + T E    +    V  +  E  L  +  +V+DE+H +
Sbjct:   373 IRVEGYMGSTSAAGGFSALDVAVCTIEKANGL----VNRLIEEDKLDLLGTVVVDELHMV 428

Query:   286 SDISRGTVWEEII 298
              D  RG + E ++
Sbjct:   429 GDSGRGYLLELLL 441

 Score = 84 (34.6 bits), Expect = 4.6e-09, Sum P(3) = 4.6e-09
 Identities = 32/101 (31%), Positives = 49/101 (48%)

Query:   262 VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIII---YCPKE-------------V 305
             V  +  E  L  +  +V+DE+H + D  RG + E ++    Y  ++             V
Sbjct:   405 VNRLIEEDKLDLLGTVVVDELHMVGDSGRGYLLELLLTKIRYIAQKTATRNSGQSTSTGV 464

Query:   306 QIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLT-W 345
             QII +SAT+ N D LA W+       EL +++ RPVPL  W
Sbjct:   465 QIIGMSATLPNLDLLARWLS-----AELYSTNYRPVPLMEW 500

 Score = 47 (21.6 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query:   730 RMEL-KRFSALKDILKDFENGH-LPFLCLQYK 759
             R++L K+FS  KD+L+  +  H LP + L+++
Sbjct:  2169 RIKLSKQFSTTKDVLEKLKPLHPLPGVILEWR 2200

 Score = 42 (19.8 bits), Expect = 7.1e-05, Sum P(3) = 7.1e-05
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query:   333 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE 379
             ++T++ R + L  +   KT  L L DEK     R+LS N  Q   SE
Sbjct:     1 MMTATTRKIYLGQHRIVKTRGLSLADEKPGQ--RQLS-NLCQEDVSE 44

 Score = 39 (18.8 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query:   926 RTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLK----ARSKRLTKR 972
             R  V  ++K + +   FK  ++ VD  +   ++ K ++    +  K LT+R
Sbjct:  1024 RADVTEVEKALRKAIPFKSSRQAVDESEVEAQERKSMRCIWVSGKKALTER 1074


>GENEDB_PFALCIPARUM|PFD1060w [details] [associations]
            symbol:PFD1060w "u5 small nuclear
            ribonucleoprotein-specific protein, putative" species:5833
            "Plasmodium falciparum" [GO:0005681 "spliceosomal complex"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
            GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
            SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
            RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
            MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
            GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
            ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
        Length = 2874

 Score = 150 (57.9 bits), Expect = 4.9e-10, Sum P(4) = 4.9e-10
 Identities = 44/152 (28%), Positives = 76/152 (50%)

Query:   495 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
             +K +L  G   HHAG   + +  +E+LF    ++V+  T TLA GIN+PA T ++   S 
Sbjct:  1095 LKEILPFGFGIHHAGLKRLDRKLVEDLFSDRHIQVLVCTSTLAWGINLPAHTVIIKGTSV 1154

Query:   554 RTAS-GRI-QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
                + G   +L+S ++ QM GR+GR   D  G  +++ T ++  +    L     E L  
Sbjct:  1155 YNINIGDFDELSSMDVLQMVGRSGRPQYDKSGKAIII-TDHKNLQLYLSL---NNEQLFI 1210

Query:   612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQ 643
             + T  + +V  + A   + ++ N  D M  L+
Sbjct:  1211 ESTLLHNIVNIINAEIVLKNIQNMDDAMNWLE 1242

 Score = 115 (45.5 bits), Expect = 4.9e-10, Sum P(4) = 4.9e-10
 Identities = 48/187 (25%), Positives = 92/187 (49%)

Query:   137 NEVKEFGNEM---IDVDEL----ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKT- 188
             NE+ E+ +E+   +++ +L    + +YD   +K++ +          +++ APT SGKT 
Sbjct:   697 NELPEWTHEVFSCVNITKLNPIQSKVYDVAFNKYEEN----------MLICAPTGSGKTN 746

Query:   189 --------LIXXXXXXXXXXNQR--RIFYTTPLKALSNQKFREFRETFGDNNVGL--LTG 236
                     +I          N++  +I Y +P+KAL N++ + F       N+ +  LTG
Sbjct:   747 IALLCILNVINSYRLTSGNINRKDFKIVYISPMKALVNEQVQSFNLRLKCMNIKVSELTG 806

Query:   237 DSAINR----EAQILIMTTEILRNMLYQSVGMVSSESGLFD-VDVIVLDEVHYLSDISRG 291
             D  ++     ++QI++MT E      +  +    +E  L   + +I+ DE+H L+++ RG
Sbjct:   807 DVNLSTKELDDSQIIVMTPE-----KFDVISRKWNEKILLHKIKLIIFDEIHLLNEM-RG 860

Query:   292 TVWEEII 298
              V E II
Sbjct:   861 NVLESII 867

 Score = 51 (23.0 bits), Expect = 0.00020, Sum P(3) = 0.00020
 Identities = 19/66 (28%), Positives = 32/66 (48%)

Query:   345 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE-VKPY-KDGGSRRRNSRKHADMNSN 402
             +Y STK   L   D +G+  N+K+++N   +   + VK    DGGS + ++        N
Sbjct:   561 YYESTK---LYNSDSQGEDANKKININAKDVKNIKGVKEEDNDGGSGKEDNEPTQKSFYN 617

Query:   403 NIVTSF 408
             N+   F
Sbjct:   618 NMKYKF 623

 Score = 42 (19.8 bits), Expect = 4.9e-10, Sum P(4) = 4.9e-10
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query:  1058 NNSSIYEPSTTVINVINVLDEHRSSF 1083
             NNS++Y PS       +VLD+H  +F
Sbjct:  1659 NNSNMYNPS-------DVLDDHVLTF 1677

 Score = 41 (19.5 bits), Expect = 4.9e-10, Sum P(4) = 4.9e-10
 Identities = 11/46 (23%), Positives = 25/46 (54%)

Query:   303 KEVQIICLSATVANADELAGWI-GQIHGKTELITSSRRPVPLTWYF 347
             K+++++ LSAT+ N +++  ++   I         S RPV +  ++
Sbjct:   965 KKIRLVGLSATLPNYEDVGIFLRAHIERGIFYFDHSFRPVQIEQHY 1010


>UNIPROTKB|Q8IFP1 [details] [associations]
            symbol:PFD1060w "U5 small nuclear
            ribonucleoprotein-specific protein, putative" species:36329
            "Plasmodium falciparum 3D7" [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
            evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
            GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
            SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
            RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
            MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
            GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
            ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
        Length = 2874

 Score = 150 (57.9 bits), Expect = 4.9e-10, Sum P(4) = 4.9e-10
 Identities = 44/152 (28%), Positives = 76/152 (50%)

Query:   495 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
             +K +L  G   HHAG   + +  +E+LF    ++V+  T TLA GIN+PA T ++   S 
Sbjct:  1095 LKEILPFGFGIHHAGLKRLDRKLVEDLFSDRHIQVLVCTSTLAWGINLPAHTVIIKGTSV 1154

Query:   554 RTAS-GRI-QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
                + G   +L+S ++ QM GR+GR   D  G  +++ T ++  +    L     E L  
Sbjct:  1155 YNINIGDFDELSSMDVLQMVGRSGRPQYDKSGKAIII-TDHKNLQLYLSL---NNEQLFI 1210

Query:   612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQ 643
             + T  + +V  + A   + ++ N  D M  L+
Sbjct:  1211 ESTLLHNIVNIINAEIVLKNIQNMDDAMNWLE 1242

 Score = 115 (45.5 bits), Expect = 4.9e-10, Sum P(4) = 4.9e-10
 Identities = 48/187 (25%), Positives = 92/187 (49%)

Query:   137 NEVKEFGNEM---IDVDEL----ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKT- 188
             NE+ E+ +E+   +++ +L    + +YD   +K++ +          +++ APT SGKT 
Sbjct:   697 NELPEWTHEVFSCVNITKLNPIQSKVYDVAFNKYEEN----------MLICAPTGSGKTN 746

Query:   189 --------LIXXXXXXXXXXNQR--RIFYTTPLKALSNQKFREFRETFGDNNVGL--LTG 236
                     +I          N++  +I Y +P+KAL N++ + F       N+ +  LTG
Sbjct:   747 IALLCILNVINSYRLTSGNINRKDFKIVYISPMKALVNEQVQSFNLRLKCMNIKVSELTG 806

Query:   237 DSAINR----EAQILIMTTEILRNMLYQSVGMVSSESGLFD-VDVIVLDEVHYLSDISRG 291
             D  ++     ++QI++MT E      +  +    +E  L   + +I+ DE+H L+++ RG
Sbjct:   807 DVNLSTKELDDSQIIVMTPE-----KFDVISRKWNEKILLHKIKLIIFDEIHLLNEM-RG 860

Query:   292 TVWEEII 298
              V E II
Sbjct:   861 NVLESII 867

 Score = 51 (23.0 bits), Expect = 0.00020, Sum P(3) = 0.00020
 Identities = 19/66 (28%), Positives = 32/66 (48%)

Query:   345 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE-VKPY-KDGGSRRRNSRKHADMNSN 402
             +Y STK   L   D +G+  N+K+++N   +   + VK    DGGS + ++        N
Sbjct:   561 YYESTK---LYNSDSQGEDANKKININAKDVKNIKGVKEEDNDGGSGKEDNEPTQKSFYN 617

Query:   403 NIVTSF 408
             N+   F
Sbjct:   618 NMKYKF 623

 Score = 42 (19.8 bits), Expect = 4.9e-10, Sum P(4) = 4.9e-10
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query:  1058 NNSSIYEPSTTVINVINVLDEHRSSF 1083
             NNS++Y PS       +VLD+H  +F
Sbjct:  1659 NNSNMYNPS-------DVLDDHVLTF 1677

 Score = 41 (19.5 bits), Expect = 4.9e-10, Sum P(4) = 4.9e-10
 Identities = 11/46 (23%), Positives = 25/46 (54%)

Query:   303 KEVQIICLSATVANADELAGWI-GQIHGKTELITSSRRPVPLTWYF 347
             K+++++ LSAT+ N +++  ++   I         S RPV +  ++
Sbjct:   965 KKIRLVGLSATLPNYEDVGIFLRAHIERGIFYFDHSFRPVQIEQHY 1010


>UNIPROTKB|E1BMC0 [details] [associations]
            symbol:POLQ "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043142 "single-stranded DNA-dependent ATPase activity"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003887
            "DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001098
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012337
            InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
            PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482 SMART:SM00490
            GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887
            GO:GO:0043142 EMBL:DAAA02001581 EMBL:DAAA02001582 EMBL:DAAA02001583
            IPI:IPI00687324 Ensembl:ENSBTAT00000002501 OMA:CFSDESI
            Uniprot:E1BMC0
        Length = 2728

 Score = 156 (60.0 bits), Expect = 9.4e-10, Sum P(4) = 9.4e-10
 Identities = 46/126 (36%), Positives = 69/126 (54%)

Query:   466 LLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGL 525
             +L++  + EV   LKR     P  +     K +  GVA HHAG     +  IE  F++G 
Sbjct:   515 MLEQKGLLEVMDQLKRS----PSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGQ 570

Query:   526 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID---NR 582
             ++V+ AT TL++G+N+PAR  ++ +      SGR+ L      QM GRAGR+G+D   N 
Sbjct:   571 IRVLAATSTLSSGVNLPARRVIIRT---PIFSGRL-LDILTYKQMVGRAGRKGVDTVGNT 626

Query:   583 GHVVLV 588
             G  +LV
Sbjct:   627 GESILV 632

 Score = 101 (40.6 bits), Expect = 9.4e-10, Sum P(4) = 9.4e-10
 Identities = 47/191 (24%), Positives = 83/191 (43%)

Query:   172 LRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRR-IFYTTPLKALSNQKFREFRETFGDNN 230
             L G ++V SAPTS+GKTL+            R+   +  P  +++ +K    +  F +  
Sbjct:   238 LEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVG 297

Query:   231 V---GLLTGDSAINREAQILIMTTEILR-NMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286
             +   G +   S     + + I    I R N L   +  +  E+ +  + ++V+DE+H L 
Sbjct:   298 IKVDGYMGSTSPTRHFSSLDIAVCTIERANGL---INRLIEENKMDLLGMVVVDELHMLG 354

Query:   287 DISRGTVWEEI---IIYCPKEVQIIC---LSATVANADELAGWIGQIHG--------KTE 332
             D  RG + E +   I Y  ++    C   L+  ++NA ++ G    +            E
Sbjct:   355 DSHRGYLLELLLTKICYITQK-SASCQADLAIPLSNAVQIVGMSATLPNLELVASWLNAE 413

Query:   333 LITSSRRPVPL 343
             L  +  RPVPL
Sbjct:   414 LYHTDFRPVPL 424

 Score = 47 (21.6 bits), Expect = 9.4e-10, Sum P(4) = 9.4e-10
 Identities = 18/90 (20%), Positives = 41/90 (45%)

Query:   914 EYHDAVENYKEQRT-KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKR 972
             E H ++   K+Q +  + + K   +  EG     K+V T+   + K + L   S++++  
Sbjct:  1115 ECHHSISRGKKQASLSIKKGKLGTSLNEGKASTSKVVRTLSSRKTKREALNFSSEKVSTI 1174

Query:   973 IEQIEPSGWKEFLRISNVIHETRALDINTQ 1002
              +  +    ++    S+ + +T+   IN Q
Sbjct:  1175 SQSWKHGKHRKRSSDSSPVKDTKMRRINLQ 1204

 Score = 40 (19.1 bits), Expect = 9.4e-10, Sum P(4) = 9.4e-10
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query:    26 QFHTLSHTLGFCI 38
             QF     TLGFC+
Sbjct:   111 QFFPSGRTLGFCV 123

 Score = 37 (18.1 bits), Expect = 9.0e-09, Sum P(4) = 9.0e-09
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query:   926 RTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLK 963
             R  VA ++  +     FK  +K VD  +   E+ + ++
Sbjct:   960 RADVAEVESVLKNAAPFKSTRKAVDEEEEAVEERRNMR 997

 Score = 37 (18.1 bits), Expect = 9.0e-09, Sum P(4) = 9.0e-09
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query:  1085 ELQEKHGV---EIPCCLDSQ--FSGMVEAWASGLTWREM 1118
             E+ +K+G    +I     S   ++GM+  +++ L W  M
Sbjct:   873 EINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNM 911


>UNIPROTKB|H9L351 [details] [associations]
            symbol:H9L351 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0004386 GeneTree:ENSGT00640000091272 EMBL:AADN02064073
            EMBL:AADN02064074 Ensembl:ENSGALT00000021750
            Ensembl:ENSGALT00000036125 Uniprot:H9L351
        Length = 254

 Score = 158 (60.7 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 43/131 (32%), Positives = 71/131 (54%)

Query:   495 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
             +K LL  G A HHAG   + ++ +E+LF    ++V+ +T TLA G+N+PA T ++     
Sbjct:    34 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 93

Query:   554 RTAS-GR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
              +   GR  +L + ++ QM GRAGR   D +G  +L+ T +   +    LL   + P+ S
Sbjct:    94 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI-TSHGELQYYLSLLNQQL-PIES 151

Query:   612 QFTASYGMVLN 622
             Q  +    +LN
Sbjct:   152 QMVSKLPDMLN 162


>GENEDB_PFALCIPARUM|PF14_0234 [details] [associations]
            symbol:PF14_0234 "DNA-directed DNA polymerase,
            putative" species:5833 "Plasmodium falciparum" [GO:0003887
            "DNA-directed DNA polymerase activity" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
            RefSeq:XP_001348408.1 ProteinModelPortal:Q8ILK9
            EnsemblProtists:PF14_0234:mRNA GeneID:811816 KEGG:pfa:PF14_0234
            EuPathDB:PlasmoDB:PF3D7_1425400 HOGENOM:HOG000281276
            ProtClustDB:CLSZ2432457 Uniprot:Q8ILK9
        Length = 1236

 Score = 93 (37.8 bits), Expect = 1.7e-06, Sum P(6) = 1.7e-06
 Identities = 27/110 (24%), Positives = 52/110 (47%)

Query:   150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXN-QRRIFYT 208
             +++  +Y+++ +  +      + +G + +  APTS GKTL+          N +++IF+ 
Sbjct:    59 EKIKELYEWQDECLRELRKVNWEKGENFICVAPTSGGKTLVTELFIFEEIKNGKKQIFFL 118

Query:   209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNML 258
              PLK+L N+K    +      N+ +  G      E  I++ T E   N L
Sbjct:   119 FPLKSLINEKMTYLKNICKGTNIRI--GVEI--EENDIILCTYEKFNNYL 164

 Score = 86 (35.3 bits), Expect = 1.7e-06, Sum P(6) = 1.7e-06
 Identities = 22/71 (30%), Positives = 39/71 (54%)

Query:   276 VIVLDEVHYLSDISRGTVWEEI---IIYCPKE---VQIICLSATVANADELAGWIGQIHG 329
             ++++DE H++++  RG   E I   I+Y  K+   ++IIC+S T+ N   L  W+     
Sbjct:   207 IVIIDEFHHINEKGRGIYIENIVSKILYMNKKRSRIKIICMSGTLNNISILKKWM----- 261

Query:   330 KTELITSSRRP 340
             K +   S+ RP
Sbjct:   262 KAKFYISTYRP 272

 Score = 75 (31.5 bits), Expect = 1.7e-06, Sum P(6) = 1.7e-06
 Identities = 43/204 (21%), Positives = 81/204 (39%)

Query:   398 DMNSNNIVTSF-GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
             + NS + +  F  +   +KN  N +  S +  ++    H    ++   I F   ++ C+ 
Sbjct:   596 ETNSKDSIMCFLNKKNQNKNKYNTLNTSLINSLLYFALHSYINNLNTLI-FCCTKKMCEF 654

Query:   457 AV----QYLEDCNLL---DECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
              +    +YL     L      +M   EL  K + I     + E   K +  G+  +++  
Sbjct:   655 YINLINEYLNTLKSLPIPQYIDMKRKELKEKIYNI--DKCIYEKMHKLISNGLCYYYSDI 712

Query:   510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
                 K  +E  ++   + ++  T TL+ G+N+     ++SS     A     LT  +  Q
Sbjct:   713 SHSVKRLLEVAYKEKTLFLLTCTSTLSVGLNLFVDRVIISS--PFVAQNF--LTYTQYKQ 768

Query:   570 MAGRAGRRGIDNRGHVVLVQTPYE 593
             M GRA R  +      + V   YE
Sbjct:   769 MIGRAAR--LKKGDSFIFVDKEYE 790

 Score = 48 (22.0 bits), Expect = 1.7e-06, Sum P(6) = 1.7e-06
 Identities = 24/75 (32%), Positives = 37/75 (49%)

Query:   922 YKEQRTKVARLKKKIARTEGFKEY-KKIVDTVKFTEEKI-KRLKARS-KRLTKR-IEQIE 977
             YK+   + ARLKK  +     KEY KK+++  K T   I   + A + + L K  IE + 
Sbjct:   766 YKQMIGRAARLKKGDSFIFVDKEYEKKMLNIFKETFTNITSTMHANTFEELEKYVIEFLC 825

Query:   978 PSGWKEFLRISNVIH 992
                  E++   +VIH
Sbjct:   826 LYNENEYISFYDVIH 840

 Score = 41 (19.5 bits), Expect = 1.7e-06, Sum P(6) = 1.7e-06
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query:   358 DEKGKHMNRKLSLNYLQLSTSEVK-PY--KDGGSRRRNSRKHADMNSNNIVTSFGQHQ 412
             +E     N+K     + ++TSE    Y  KD      N+ +   MNS+++  + GQ +
Sbjct:   315 NESASFQNQKFYETNM-MNTSECSLQYLNKDNIYNNNNNIEMVGMNSSHVFMAGGQEE 371

 Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(6) = 1.7e-06
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query:  1018 NELWLAMVLRNKILLDLKPAQLAAVCASLVSEG 1050
             NE W+ + L  K L + K ++  ++ A    +G
Sbjct:  1198 NE-WILVCLLKKFLQNFKSSKQLSIYAGKFKKG 1229


>UNIPROTKB|Q8ILK9 [details] [associations]
            symbol:PF14_0234 "DNA-directed DNA polymerase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0003887 "DNA-directed
            DNA polymerase activity" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
            RefSeq:XP_001348408.1 ProteinModelPortal:Q8ILK9
            EnsemblProtists:PF14_0234:mRNA GeneID:811816 KEGG:pfa:PF14_0234
            EuPathDB:PlasmoDB:PF3D7_1425400 HOGENOM:HOG000281276
            ProtClustDB:CLSZ2432457 Uniprot:Q8ILK9
        Length = 1236

 Score = 93 (37.8 bits), Expect = 1.7e-06, Sum P(6) = 1.7e-06
 Identities = 27/110 (24%), Positives = 52/110 (47%)

Query:   150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXN-QRRIFYT 208
             +++  +Y+++ +  +      + +G + +  APTS GKTL+          N +++IF+ 
Sbjct:    59 EKIKELYEWQDECLRELRKVNWEKGENFICVAPTSGGKTLVTELFIFEEIKNGKKQIFFL 118

Query:   209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNML 258
              PLK+L N+K    +      N+ +  G      E  I++ T E   N L
Sbjct:   119 FPLKSLINEKMTYLKNICKGTNIRI--GVEI--EENDIILCTYEKFNNYL 164

 Score = 86 (35.3 bits), Expect = 1.7e-06, Sum P(6) = 1.7e-06
 Identities = 22/71 (30%), Positives = 39/71 (54%)

Query:   276 VIVLDEVHYLSDISRGTVWEEI---IIYCPKE---VQIICLSATVANADELAGWIGQIHG 329
             ++++DE H++++  RG   E I   I+Y  K+   ++IIC+S T+ N   L  W+     
Sbjct:   207 IVIIDEFHHINEKGRGIYIENIVSKILYMNKKRSRIKIICMSGTLNNISILKKWM----- 261

Query:   330 KTELITSSRRP 340
             K +   S+ RP
Sbjct:   262 KAKFYISTYRP 272

 Score = 75 (31.5 bits), Expect = 1.7e-06, Sum P(6) = 1.7e-06
 Identities = 43/204 (21%), Positives = 81/204 (39%)

Query:   398 DMNSNNIVTSF-GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
             + NS + +  F  +   +KN  N +  S +  ++    H    ++   I F   ++ C+ 
Sbjct:   596 ETNSKDSIMCFLNKKNQNKNKYNTLNTSLINSLLYFALHSYINNLNTLI-FCCTKKMCEF 654

Query:   457 AV----QYLEDCNLL---DECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
              +    +YL     L      +M   EL  K + I     + E   K +  G+  +++  
Sbjct:   655 YINLINEYLNTLKSLPIPQYIDMKRKELKEKIYNI--DKCIYEKMHKLISNGLCYYYSDI 712

Query:   510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
                 K  +E  ++   + ++  T TL+ G+N+     ++SS     A     LT  +  Q
Sbjct:   713 SHSVKRLLEVAYKEKTLFLLTCTSTLSVGLNLFVDRVIISS--PFVAQNF--LTYTQYKQ 768

Query:   570 MAGRAGRRGIDNRGHVVLVQTPYE 593
             M GRA R  +      + V   YE
Sbjct:   769 MIGRAAR--LKKGDSFIFVDKEYE 790

 Score = 48 (22.0 bits), Expect = 1.7e-06, Sum P(6) = 1.7e-06
 Identities = 24/75 (32%), Positives = 37/75 (49%)

Query:   922 YKEQRTKVARLKKKIARTEGFKEY-KKIVDTVKFTEEKI-KRLKARS-KRLTKR-IEQIE 977
             YK+   + ARLKK  +     KEY KK+++  K T   I   + A + + L K  IE + 
Sbjct:   766 YKQMIGRAARLKKGDSFIFVDKEYEKKMLNIFKETFTNITSTMHANTFEELEKYVIEFLC 825

Query:   978 PSGWKEFLRISNVIH 992
                  E++   +VIH
Sbjct:   826 LYNENEYISFYDVIH 840

 Score = 41 (19.5 bits), Expect = 1.7e-06, Sum P(6) = 1.7e-06
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query:   358 DEKGKHMNRKLSLNYLQLSTSEVK-PY--KDGGSRRRNSRKHADMNSNNIVTSFGQHQ 412
             +E     N+K     + ++TSE    Y  KD      N+ +   MNS+++  + GQ +
Sbjct:   315 NESASFQNQKFYETNM-MNTSECSLQYLNKDNIYNNNNNIEMVGMNSSHVFMAGGQEE 371

 Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(6) = 1.7e-06
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query:  1018 NELWLAMVLRNKILLDLKPAQLAAVCASLVSEG 1050
             NE W+ + L  K L + K ++  ++ A    +G
Sbjct:  1198 NE-WILVCLLKKFLQNFKSSKQLSIYAGKFKKG 1229


>ASPGD|ASPL0000030426 [details] [associations]
            symbol:AN5514 species:162425 "Emericella nidulans"
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003678 "DNA helicase activity" evidence=IEA] [GO:0007129
            "synapsis" evidence=IEA] [GO:0007131 "reciprocal meiotic
            recombination" evidence=IEA] [GO:0006268 "DNA unwinding involved in
            replication" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
            GO:GO:0005524 GO:GO:0003676 EMBL:BN001305 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
            SMART:SM00973 eggNOG:COG1204 EMBL:AACD01000094 GO:GO:0008026
            KO:K15271 OrthoDB:EOG4WWVSR RefSeq:XP_663118.1
            ProteinModelPortal:Q5B1R6 EnsemblFungi:CADANIAT00003572
            GeneID:2871792 KEGG:ani:AN5514.2 HOGENOM:HOG000216651
            Uniprot:Q5B1R6
        Length = 1385

 Score = 154 (59.3 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
 Identities = 50/195 (25%), Positives = 98/195 (50%)

Query:   150 DELASIYDFRI-DKFQRSSIEAFLRGS-SVVVSAPTSSGKTLIXXXXXXXXXXNQR---- 203
             D    +++F + +  Q     A  +   +VV++APT SGKT++           ++    
Sbjct:   239 DNYRPLFNFPVFNAVQSKCFHAIYKSDDNVVIAAPTGSGKTVVMELAICRLLNIRKDKKF 298

Query:   204 RIFYTTPLKALSNQKFREFRETFGDNNVGL----LTGD---SAIN--REAQILIMTTEIL 254
             ++ Y  P K+L +++FR++ + F  + +GL    LTGD   S +   +  QI++ T E  
Sbjct:   299 KVVYQAPTKSLCSERFRDWNQKF--HALGLQCAELTGDTDHSQLGNVQNRQIIVTTPEKW 356

Query:   255 RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK---EVQIICLS 311
              +M  +    +     +  V + ++DEVH L + +RG   E ++         V+ + LS
Sbjct:   357 DSMTRKWKDHIRL---MQPVKLFLIDEVHTLKE-ARGATLEAVVSRMKSIGSNVRFVALS 412

Query:   312 ATVANADELAGWIGQ 326
             AT+ N++++A W+G+
Sbjct:   413 ATIPNSEDIATWLGR 427

 Score = 48 (22.0 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query:   566 ELFQMAGRAGRRGIDNRGHVVLV 588
             E+ QM GRAGR   D+    V++
Sbjct:   576 EVMQMLGRAGRPQFDDSATAVIL 598

 Score = 47 (21.6 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVV 529
             GVA HHAG     +  +E  + +G + V+
Sbjct:   536 GVAFHHAGLETEDRHLVENGYLQGKISVI 564

 Score = 40 (19.1 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query:   917 DAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDT-VKFTEEKIKRLKARSKRLTKR 972
             D VE    +    A L+KK ++ +G  +  KI    +  +   ++  ++R K L  R
Sbjct:  1112 DDVEFEPSELVSAAPLQKKASKNKGDSQDVKIGHCEITMSSFNVRAKQSRCKHLCCR 1168

 Score = 40 (19.1 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
 Identities = 24/78 (30%), Positives = 33/78 (42%)

Query:  1029 KILLDLKP----AQ-LAAVCASLVSEGIKVRLWKNNSSIYEP---STTV---INVINVLD 1077
             K L+ +KP    AQ LA +C +   E   +R       +Y+    S  +   I V  VL 
Sbjct:   721 KTLIKMKPKSDIAQILAIICQA--EEFRDIRFKAGEKLLYKEINRSKDIRFPIEVDIVLP 778

Query:  1078 EHRSSFLELQEKHGVEIP 1095
              H+ S L   E   VE P
Sbjct:   779 AHKISLLIQSELGAVEFP 796


>UNIPROTKB|B4E0P5 [details] [associations]
            symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
            helicase" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR001650
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0030529 GO:GO:0004386 InterPro:IPR004179 Pfam:PF02889
            SMART:SM00611 SMART:SM00973 EMBL:AC021188 UniGene:Hs.246112
            HGNC:HGNC:30859 ChiTaRS:SNRNP200 EMBL:AK303465 IPI:IPI00927472
            SMR:B4E0P5 STRING:B4E0P5 Ensembl:ENST00000429650
            HOGENOM:HOG000031250 HOVERGEN:HBG078981 Uniprot:B4E0P5
        Length = 595

 Score = 116 (45.9 bits), Expect = 0.00014, Sum P(3) = 0.00014
 Identities = 38/152 (25%), Positives = 72/152 (47%)

Query:   443 PAIWFIFNRRGCD-AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG-LLK 500
             P I F+ +R+     A+  L  C    + +        ++  I Y + + +  +K  LL 
Sbjct:    85 PVIVFVPSRKQTRLTAIDILTTCAA--DIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLN 142

Query:   501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
             GV   H G  P+ +  +E+LF  G ++VV A+ +L  G+N+ A   ++  +  +  +G+I
Sbjct:   143 GVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVII--MDTQYYNGKI 200

Query:   561 QLTSN----ELFQMAGRAGRRGIDNRGHVVLV 588
                 +    ++ QM G A R   D+ G  V++
Sbjct:   201 HAYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 232

 Score = 69 (29.3 bits), Expect = 0.00014, Sum P(3) = 0.00014
 Identities = 14/41 (34%), Positives = 26/41 (63%)

Query:   303 KEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPL 343
             + ++I+ LS++++NA ++A W+G     T     + RPVPL
Sbjct:    10 RPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPL 50

 Score = 38 (18.4 bits), Expect = 0.00014, Sum P(3) = 0.00014
 Identities = 6/27 (22%), Positives = 17/27 (62%)

Query:  1068 TVINVINVLDEHRSSFLELQEKHGVEI 1094
             +V +++ + DE R++ L+L +    ++
Sbjct:   508 SVFDIMEMEDEERNALLQLTDSQIADV 534


>UNIPROTKB|P52126 [details] [associations]
            symbol:yfjK "CP4-57 prophage; conserved protein"
            species:83333 "Escherichia coli K-12" [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003676
            EMBL:U36840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            eggNOG:COG1204 GO:GO:0008026 PIR:T08639 RefSeq:NP_417116.1
            RefSeq:YP_490848.1 ProteinModelPortal:P52126 SMR:P52126
            DIP:DIP-12076N IntAct:P52126 MINT:MINT-1230544
            EnsemblBacteria:EBESCT00000004366 EnsemblBacteria:EBESCT00000018403
            GeneID:12931629 GeneID:947111 KEGG:ecj:Y75_p2573 KEGG:eco:b2627
            PATRIC:32120647 EchoBASE:EB2989 EcoGene:EG13197
            HOGENOM:HOG000036311 OMA:KNISGRA ProtClustDB:CLSK891780
            BioCyc:EcoCyc:G7362-MONOMER BioCyc:ECOL316407:JW2608-MONOMER
            Genevestigator:P52126 Uniprot:P52126
        Length = 729

 Score = 98 (39.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
 Identities = 29/113 (25%), Positives = 51/113 (45%)

Query:   174 GSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALSNQKFREFRETFGDNNVGL 233
             G +VV+SAPTS GK+ I            +R+    P  AL+++  R  +E FGD    +
Sbjct:   115 GQNVVLSAPTSMGKSAIVDSLLGMGTL--KRLVLVVPTVALADETRRRLQERFGDRYQII 172

Query:   234 LTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286
                    + +  + ++T E            V+    + D+D+ V+DE + L+
Sbjct:   173 HHSSQVCHSDQAVYVLTQE-----------RVNERDDIVDIDLFVIDEFYKLA 214

 Score = 84 (34.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
 Identities = 37/143 (25%), Positives = 60/143 (41%)

Query:   498 LLKGVAAHHAGCLP-IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
             L  G+  H  G LP   + +  + F  G ++ +  T T+  G+N  A+  V+     R  
Sbjct:   357 LRNGIGLHF-GALPRALQQYTADQFNAGKLRFLLCTSTIIEGVNTIAKNVVI--YDNRDG 413

Query:   557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVV-LVQTPYEGAEECCKLLFAGVEPLVSQFTA 615
             +  I   ++    + GRAGR G+   G +  L + P +   +   +      PL  Q   
Sbjct:   414 TRSIDKFTHG--NIKGRAGRMGVHFVGKIFCLEEIPEDNLNQEVDI------PLGIQ--- 462

Query:   616 SYGMVLNLLAGAKVMHLSNESDD 638
                  +NLLA  +  HLS  S D
Sbjct:   463 GIDTPINLLASVQPDHLSEFSQD 485


>UNIPROTKB|Q48AV0 [details] [associations]
            symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
            GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
            BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
        Length = 420

 Score = 109 (43.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
 Identities = 42/172 (24%), Positives = 74/172 (43%)

Query:   154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKT------LIXXXXXXXXXXNQRRIFY 207
             S YD    + Q+ SI   L    V+  A T +GKT      ++           + R   
Sbjct:    23 SAYD-EPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQPCKPELRALV 81

Query:   208 TTPLKALSNQKFREFRE--TFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
              TP + L+ Q  + F     F D  +G+  G  +  ++   L +  +IL     + + ++
Sbjct:    82 LTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLLDLL 141

Query:   266 SSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316
              +ES  L +++ +V DE   + D+      ++I  Y PK  Q +  SAT A+
Sbjct:   142 RTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFSATFAD 193

 Score = 64 (27.6 bits), Expect = 0.00026, Sum P(2) = 0.00026
 Identities = 37/170 (21%), Positives = 69/170 (40%)

Query:   477 LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA 536
             L   R +    D  +E    G+ K +A H        +  + E F+ G V+ + AT+  A
Sbjct:   250 LVFTRTKQCADDLAKEMTKDGV-KSLAIHGDKSQGAREKALHE-FKEGKVRALIATDVAA 307

Query:   537 AGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE 596
              GI++   + V++          +   + +     GR  R G  N G  V + +P  G E
Sbjct:   308 RGIDIKGLSHVINY--------ELPYNAEDYVHRIGRTARAG--NSGLAVSLVSP--GEE 355

Query:   597 ECCKLLFAGVE-PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAG 645
                  +   ++  L+ Q+   Y + L  +A +    ++ ++    AL AG
Sbjct:   356 WLLTAIEELLDIQLLQQWLPGYELDLTKIANSNKRPINKKNARKDALSAG 405


>TIGR_CMR|CPS_0042 [details] [associations]
            symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
            GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
            BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
        Length = 420

 Score = 109 (43.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
 Identities = 42/172 (24%), Positives = 74/172 (43%)

Query:   154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKT------LIXXXXXXXXXXNQRRIFY 207
             S YD    + Q+ SI   L    V+  A T +GKT      ++           + R   
Sbjct:    23 SAYD-EPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQPCKPELRALV 81

Query:   208 TTPLKALSNQKFREFRE--TFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
              TP + L+ Q  + F     F D  +G+  G  +  ++   L +  +IL     + + ++
Sbjct:    82 LTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLLDLL 141

Query:   266 SSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316
              +ES  L +++ +V DE   + D+      ++I  Y PK  Q +  SAT A+
Sbjct:   142 RTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFSATFAD 193

 Score = 64 (27.6 bits), Expect = 0.00026, Sum P(2) = 0.00026
 Identities = 37/170 (21%), Positives = 69/170 (40%)

Query:   477 LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA 536
             L   R +    D  +E    G+ K +A H        +  + E F+ G V+ + AT+  A
Sbjct:   250 LVFTRTKQCADDLAKEMTKDGV-KSLAIHGDKSQGAREKALHE-FKEGKVRALIATDVAA 307

Query:   537 AGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE 596
              GI++   + V++          +   + +     GR  R G  N G  V + +P  G E
Sbjct:   308 RGIDIKGLSHVINY--------ELPYNAEDYVHRIGRTARAG--NSGLAVSLVSP--GEE 355

Query:   597 ECCKLLFAGVE-PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAG 645
                  +   ++  L+ Q+   Y + L  +A +    ++ ++    AL AG
Sbjct:   356 WLLTAIEELLDIQLLQQWLPGYELDLTKIANSNKRPINKKNARKDALSAG 405


>UNIPROTKB|I3LT20 [details] [associations]
            symbol:LOC100525691 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR011545
            Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
            GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
            Ensembl:ENSSSCT00000023488 Uniprot:I3LT20
        Length = 354

 Score = 121 (47.7 bits), Expect = 0.00059, P = 0.00059
 Identities = 45/162 (27%), Positives = 82/162 (50%)

Query:   176 SVVVSAPTSSGKTLIXXXXXXXXXX--NQRRIFYTTPLKALSNQKFREFRETFGDN---N 230
             +V V APT SGKT+             ++ R  Y TP++AL+ Q + ++ E F D     
Sbjct:   179 NVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK 238

Query:   231 VGLLTGDSAINRE----AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286
             V LLTG+++ + +      I+I T E   ++L +          + ++++ V+DEVH + 
Sbjct:   239 VVLLTGETSTDLKLLGKGNIIISTPEKW-DILSRRW---KQRKNVQNINLFVVDEVHLIG 294

Query:   287 DISRGTVWEEI---IIYCPKEVQ----IICLSATVANADELA 321
                 G V E I   + Y   +++    I+ LS++++NA ++A
Sbjct:   295 G-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA 335


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0     1174      1098   0.00087  123 3  11 22  0.39    34
                                                     38  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  133
  No. of states in DFA:  631 (67 KB)
  Total size of DFA:  500 KB (2231 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  97.38u 0.17s 97.55t   Elapsed:  00:00:05
  Total cpu time:  97.45u 0.17s 97.62t   Elapsed:  00:00:05
  Start:  Fri May 10 01:26:24 2013   End:  Fri May 10 01:26:29 2013
WARNINGS ISSUED:  1
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with EMB25 EMB25 EMB25 AT1G70070	protein from Arabidopsis thaliana	0.
BLAST match view associations BLAST with orf19.6425 orf19.6425 orf19.6425	gene_product from Candida albicans	4.3e-75
BLAST match view associations BLAST with skih-2 skih-2 skih-2	gene from Caenorhabditis elegans	6.6e-74
BLAST match view associations BLAST with DDB_G0275633 DDB_G0275633 DDB_G0275633 superkiller viralicidic activity 2-like protein	gene from Dictyostelium discoideum	2.3e-66
BLAST match view associations BLAST with MTR4 MTR4 MTR4 homolog of yeast MTR4	protein from Arabidopsis thaliana	7.8e-65
BLAST match view associations BLAST with mtr-4 mtr-4 mtr-4	gene from Caenorhabditis elegans	4.0e-64
BLAST match view associations BLAST with SKIV2L2 SKIV2L2 SKIV2L2 Uncharacterized protein	protein from Bos taurus	1.9e-61
BLAST match view associations BLAST with SKIV2L2 SKIV2L2 SKIV2L2 Uncharacterized protein	protein from Bos taurus	6.5e-60
BLAST match view associations BLAST with Skiv2l2 Skiv2l2 Skiv2l2 superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein from Mus musculus	1.0e-59
BLAST match view associations BLAST with HEN2 HEN2 HEN2 hua enhancer 2	protein from Arabidopsis thaliana	1.6e-59
BLAST match view associations BLAST with SKIV2L2 SKIV2L2 SKIV2L2 Uncharacterized protein	protein from Sus scrofa	1.7e-59
BLAST match view associations BLAST with SKIV2L2 SKIV2L2 SKIV2L2 Superkiller viralicidic activity 2-like 2	protein from Homo sapiens	3.6e-59
BLAST match view associations BLAST with SKIV2L2 SKIV2L2 SKIV2L2 Uncharacterized protein	protein from Canis lupus familiaris	5.5e-59
BLAST match view associations BLAST with SKIV2L2 SKIV2L2 SKIV2L2 Superkiller viralicidic activity 2-like 2	protein from Homo sapiens	7.0e-59
BLAST match view associations BLAST with l(2)35Df l(2)35Df l(2)35Df lethal (2) 35Df	protein from Drosophila melanogaster	7.1e-59
BLAST match view associations BLAST with skiv2l2 skiv2l2 skiv2l2 superkiller viralicidic activity 2-like 2	gene_product from Danio rerio	3.4e-57
BLAST match view associations BLAST with helY helY helY Probable helicase HelY	protein from Mycobacterium tuberculosis	4.0e-50
BLAST match view associations BLAST with SKI2 SKI2 SKI2 Ski complex component and putative RNA helicase	gene from Saccharomyces cerevisiae	5.2e-49
BLAST match view associations BLAST with skiv2l skiv2l skiv2l superkiller viralicidic activity 2 (S. cerevisiae homolog)-like	gene_product from Danio rerio	6.2e-44
BLAST match view associations BLAST with SKIV2L SKIV2L SKIV2L Helicase SKI2W	protein from Homo sapiens	1.1e-42
BLAST match view associations BLAST with SKIV2L SKIV2L SKIV2L Uncharacterized protein	protein from Sus scrofa	1.1e-42
BLAST match view associations BLAST with SKIV2L SKIV2L SKIV2L Helicase SKI2W	protein from Homo sapiens	2.4e-42
BLAST match view associations BLAST with LOC100139548 LOC100139548 LOC100139548 Uncharacterized protein	protein from Bos taurus	4.0e-42
BLAST match view associations BLAST with Skiv2l Skiv2l Skiv2l superkiller viralicidic activity 2-like (S. cerevisiae )	gene from Rattus norvegicus	5.0e-42
BLAST match view associations BLAST with SKIV2L SKIV2L SKIV2L Uncharacterized protein	protein from Canis lupus familiaris	5.1e-42
BLAST match view associations BLAST with F1N993 F1N993 F1N993 Uncharacterized protein	protein from Gallus gallus	7.8e-42
BLAST match view associations BLAST with orf19.1335 orf19.1335 orf19.1335	gene_product from Candida albicans	3.2e-41
BLAST match view associations BLAST with AT3G46960 AT3G46960 AT3G46960	protein from Arabidopsis thaliana	9.5e-40
BLAST match view associations BLAST with MGG_03931 MGG_03931 MGG_03931 FRQ-interacting RNA helicase	protein from Magnaporthe oryzae 70-15	1.9e-39
BLAST match view associations BLAST with tst tst tst twister	protein from Drosophila melanogaster	9.5e-39
BLAST match view associations BLAST with DDB_G0277211 DDB_G0277211 DDB_G0277211 superkiller viralicidic activity 2-like protein	gene from Dictyostelium discoideum	6.2e-38
BLAST match view associations BLAST with MTR4 MTR4 MTR4 ATP-dependent 3'-5' RNA helicase of the DExD/H family	gene from Saccharomyces cerevisiae	1.0e-37
BLAST match view associations BLAST with PFF0100w PFF0100w PFF0100w putative ATP dependent RNA helicase	gene from Plasmodium falciparum	5.9e-35
BLAST match view associations BLAST with MGG_07250 MGG_07250 MGG_07250 DEAD/DEAH box helicase	protein from Magnaporthe oryzae 70-15	3.7e-23
BLAST match view associations BLAST with C28H8.3 C28H8.3 C28H8.3	gene from Caenorhabditis elegans	2.6e-21
BLAST match view associations BLAST with DDB_G0278827 DDB_G0278827 DDB_G0278827 Probable ATP-dependent RNA helicase DDX60	gene from Dictyostelium discoideum	7.0e-21
BLAST match view associations BLAST with helq-1 helq-1 helq-1	gene from Caenorhabditis elegans	9.3e-21
BLAST match view associations BLAST with DDX60 DDX60 DDX60 Uncharacterized protein	protein from Canis lupus familiaris	2.8e-20
BLAST match view associations BLAST with DDX60 DDX60 DDX60 Uncharacterized protein	protein from Canis lupus familiaris	2.8e-20
BLAST match view associations BLAST with Ddx60 Ddx60 Ddx60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	gene from Rattus norvegicus	1.7e-19
BLAST match view associations BLAST with SLH1 SLH1 SLH1 Putative RNA helicase related to Ski2p	gene from Saccharomyces cerevisiae	4.3e-19
BLAST match view associations BLAST with MGG_05900 MGG_05900 MGG_05900 Uncharacterized protein	protein from Magnaporthe oryzae 70-15	1.6e-18
BLAST match view associations BLAST with BRR2 BRR2 BRR2 RNA-dependent ATPase RNA helicase (DEIH box)	gene from Saccharomyces cerevisiae	7.2e-18
BLAST match view associations BLAST with DDX60L DDX60L DDX60L Probable ATP-dependent RNA helicase DDX60-like	protein from Homo sapiens	9.1e-18
BLAST match view associations BLAST with orf19.3980 orf19.3980 orf19.3980	gene_product from Candida albicans	1.4e-17
BLAST match view associations BLAST with helq helq helq helicase, POLQ-like	gene_product from Danio rerio	1.5e-17
BLAST match view associations BLAST with orf19.3098 orf19.3098 orf19.3098	gene_product from Candida albicans	2.6e-17
BLAST match view associations BLAST with DDX60 DDX60 DDX60 Probable ATP-dependent RNA helicase DDX60	protein from Homo sapiens	6.8e-17
BLAST match view associations BLAST with CG5205 CG5205 CG5205	protein from Drosophila melanogaster	9.6e-17
BLAST match view associations BLAST with HELQ HELQ HELQ Uncharacterized protein	protein from Canis lupus familiaris	1.6e-16
BLAST match view associations BLAST with HELQ HELQ HELQ Uncharacterized protein	protein from Canis lupus familiaris	1.7e-16
BLAST match view associations BLAST with HELQ HELQ HELQ Uncharacterized protein	protein from Gallus gallus	2.1e-16
BLAST match view associations BLAST with Hfm1 Hfm1 Hfm1 HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)	gene from Rattus norvegicus	2.3e-16
BLAST match view associations BLAST with Helq Helq Helq helicase, POLQ-like	protein from Mus musculus	2.6e-16
BLAST match view associations BLAST with DDB_G0279107 DDB_G0279107 DDB_G0279107 Helicase POLQ-like	gene from Dictyostelium discoideum	3.4e-16
BLAST match view associations BLAST with ascc3 ascc3 ascc3 activating signal cointegrator 1 complex subunit	gene from Dictyostelium discoideum	7.6e-16
BLAST match view associations BLAST with HFM1 HFM1 HFM1 Meiosis specific DNA helicase	gene from Saccharomyces cerevisiae	8.9e-16
BLAST match view associations BLAST with PF14_0370 PF14_0370 PF14_0370 RNA helicase, putative	gene from Plasmodium falciparum	1.4e-15
BLAST match view associations BLAST with PF14_0370 PF14_0370 PF14_0370 DEAD/DEAH box helicase, putative	protein from Plasmodium falciparum 3D7	1.4e-15
BLAST match view associations BLAST with Polq Polq Polq polymerase (DNA directed), theta	gene from Rattus norvegicus	4.0e-15
BLAST match view associations BLAST with POLQ POLQ POLQ Uncharacterized protein	protein from Gallus gallus	8.9e-15
BLAST match view associations BLAST with MGG_06124 MGG_06124 MGG_06124 Activating signal cointegrator 1 complex subunit 3	protein from Magnaporthe oryzae 70-15	1.8e-14
BLAST match view associations BLAST with HFM1 HFM1 HFM1 Uncharacterized protein	protein from Sus scrofa	1.9e-14
BLAST match view associations BLAST with mus301 mus301 mus301 mutagen-sensitive 301	protein from Drosophila melanogaster	2.1e-14
BLAST match view associations BLAST with HELQ HELQ HELQ Uncharacterized protein	protein from Sus scrofa	2.7e-14
BLAST match view associations BLAST with mus308 mus308 mus308 mutagen-sensitive 308	protein from Drosophila melanogaster	3.2e-14
BLAST match view associations BLAST with HELQ HELQ HELQ Helicase POLQ-like	protein from Homo sapiens	4.9e-14
BLAST match view associations BLAST with DDX60 DDX60 DDX60 Uncharacterized protein	protein from Sus scrofa	4.9e-14
BLAST match view associations BLAST with AT2G42270 AT2G42270 AT2G42270	protein from Arabidopsis thaliana	6.2e-14
BLAST match view associations BLAST with HFM1 HFM1 HFM1 Uncharacterized protein	protein from Canis lupus familiaris	9.9e-14
BLAST match view associations BLAST with HFM1 HFM1 HFM1 Uncharacterized protein	protein from Canis lupus familiaris	1.1e-13
BLAST match view associations BLAST with AT4G32700 AT4G32700 AT4G32700	protein from Arabidopsis thaliana	1.2e-13
BLAST match view associations BLAST with F1SU44 F1SU44 F1SU44 Uncharacterized protein	protein from Sus scrofa	1.5e-13
BLAST match view associations BLAST with HFM1 HFM1 HFM1 Probable ATP-dependent DNA helicase HFM1	protein from Homo sapiens	1.6e-13
BLAST match view associations BLAST with Ascc3 Ascc3 Ascc3 activating signal cointegrator 1 complex subunit 3	protein from Mus musculus	2.1e-13
BLAST match view associations BLAST with HFM1 HFM1 HFM1 Uncharacterized protein	protein from Bos taurus	3.3e-13
BLAST match view associations BLAST with Ascc3 Ascc3 Ascc3 activating signal cointegrator 1 complex subunit 3	gene from Rattus norvegicus	5.3e-13
BLAST match view associations BLAST with ascc3 ascc3 ascc3 Activating signal cointegrator 1 complex subunit 3	protein from Gallus gallus	5.3e-13
BLAST match view associations BLAST with snrp-200 snrp-200 snrp-200	gene from Caenorhabditis elegans	7.2e-13
BLAST match view associations BLAST with Y46G5A.4 Y46G5A.4 Y46G5A.4 Putative U5 small nuclear ribonucleoprotein 200 kDa helicase	protein from Caenorhabditis elegans	7.2e-13