BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001047
(1174 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225424807|ref|XP_002267766.1| PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2,
chloroplastic-like [Vitis vinifera]
Length = 1174
Score = 1805 bits (4676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 909/1177 (77%), Positives = 1014/1177 (86%), Gaps = 20/1177 (1%)
Query: 4 HSILSGSTTFPVFANTKPFSFHQFHTLSHTLGFCIPKPLLSSNSI--QFQASYKSPKSFF 61
H+ L ST + K F Q H+ S LGFC PKPL I +F+ SYK +S F
Sbjct: 12 HTTLHSST----LSTDKACPFLQSHSHSRALGFCFPKPLRPPAQISSRFRISYKFRRSLF 67
Query: 62 PTEHKLTDADEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAP 121
P E +L+D DE D+ DD ++ A + DV GE D ++ DE E S +S AP
Sbjct: 68 PVESQLSDVDEDDDDDDD-------DDEAADEYDVPGEALDGVE---DEIETSMATSEAP 117
Query: 122 SWR-EEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVS 180
+ R +EFKWQRVEKLCNEV+EFG E+IDV+ELASIYDFRIDKFQR +I+AFLRGSSVVVS
Sbjct: 118 ASRSDEFKWQRVEKLCNEVREFGEELIDVEELASIYDFRIDKFQRLAIQAFLRGSSVVVS 177
Query: 181 APTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI 240
APTSSGKTLIAEAAAVATV+ RR+FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSA+
Sbjct: 178 APTSSGKTLIAEAAAVATVSRGRRLFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAV 237
Query: 241 NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY 300
N++AQ+LIMTTEILRNMLYQSVGMVSS SGLF VDVIVLDEVHYLSDI RGTVWEEI+IY
Sbjct: 238 NKDAQVLIMTTEILRNMLYQSVGMVSSGSGLFHVDVIVLDEVHYLSDIYRGTVWEEIVIY 297
Query: 301 CPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEK 360
CPKEVQ+ICLSATVAN DELAGWI QIHGKTEL+TSS+RPVPLTW+FSTKT+LLPLLDEK
Sbjct: 298 CPKEVQLICLSATVANPDELAGWISQIHGKTELVTSSKRPVPLTWHFSTKTSLLPLLDEK 357
Query: 361 GKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH-ADMNSNNIVTSFGQHQLSKNSIN 419
GK MNRKLSL+YLQ S YKD SRRRN +K +DM+ ++ + GQ LSKN IN
Sbjct: 358 GKSMNRKLSLSYLQNYASGDNSYKDERSRRRNLKKRESDMSYSSFASIHGQSSLSKNDIN 417
Query: 420 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL 479
IRRSQVPQV+DTLWHL++RDMLPAIWFIF+R+GCDA+VQYLEDCNLLDE EMSEV+LAL
Sbjct: 418 TIRRSQVPQVMDTLWHLKARDMLPAIWFIFSRKGCDASVQYLEDCNLLDESEMSEVDLAL 477
Query: 480 KRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 539
KRFR+ YPDAVRE A+KGLL+GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGI
Sbjct: 478 KRFRLQYPDAVRESAVKGLLQGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGI 537
Query: 540 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 599
NMPARTAV+SSLSKR SGRIQL+SNEL QMAGRAGRRGID GH VLVQTPY+GAEECC
Sbjct: 538 NMPARTAVISSLSKRGESGRIQLSSNELLQMAGRAGRRGIDESGHAVLVQTPYDGAEECC 597
Query: 600 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 659
KLLFAGVEPLVSQFTASYGMVLNLLAGAKV +ES+D+K LQAGR+LEEARKLVEQSF
Sbjct: 598 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVTRRLSESNDLKVLQAGRTLEEARKLVEQSF 657
Query: 660 GNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKA 719
GNYVGSNVMLAAK+EL K++KE +VL+SE++DDAIDRKSR+LLSE AY E+ANLQEEL+A
Sbjct: 658 GNYVGSNVMLAAKEELTKVEKEIEVLSSEVTDDAIDRKSRKLLSEMAYNEIANLQEELRA 717
Query: 720 EKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSL 779
EKR RTELRRRMEL+R SALK +LK+ ENGHLPF+CLQYKDSE V+H VPAVYLGK DS
Sbjct: 718 EKRLRTELRRRMELRRMSALKLLLKESENGHLPFVCLQYKDSEDVQHLVPAVYLGKVDSF 777
Query: 780 DSSKLKNMASINDSFALNRLA-QSNGDDYDTQ-DVKPSYYVALGSDNTWYTFTEKWIKTV 837
D SK+KNM ND FALN + + N DD D+Q + KPSYYVALGSDN+WY FTEKWIKTV
Sbjct: 778 DGSKVKNMVYTNDCFALNAVVTELNVDDTDSQPNGKPSYYVALGSDNSWYLFTEKWIKTV 837
Query: 838 YRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVP 897
YR GFPNVALAQGDALPRE M LLDK ++ WE+LA SE GGLWC+EGSLETWSWSLNVP
Sbjct: 838 YRTGFPNVALAQGDALPREIMRALLDKADIQWEELAKSELGGLWCIEGSLETWSWSLNVP 897
Query: 898 VLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEE 957
VLSSLSE DEVL MS Y++AVE YKEQR KV+RLKKKIARTEGFKEYKKI+D KFTEE
Sbjct: 898 VLSSLSEDDEVLKMSQAYYEAVECYKEQRNKVSRLKKKIARTEGFKEYKKIIDMSKFTEE 957
Query: 958 KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGE 1017
KIKRLKARS RL+ RIEQIEPSGWKEFL++SNVIHETRALDINT +IFPLGETAAAIRGE
Sbjct: 958 KIKRLKARSNRLSSRIEQIEPSGWKEFLQVSNVIHETRALDINTHIIFPLGETAAAIRGE 1017
Query: 1018 NELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLD 1077
NELWLAMVLR+K+LL LKPAQLAAVC SLVSEGIKVR WKNNS IYE STTVINVI++LD
Sbjct: 1018 NELWLAMVLRSKVLLGLKPAQLAAVCGSLVSEGIKVRPWKNNSYIYEASTTVINVISLLD 1077
Query: 1078 EHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTI 1137
E R+S L+LQEKH V+IPCCLDSQFSGMVEAWASGLTWRE+MMDCA+D+GDLARLLRRTI
Sbjct: 1078 EQRNSLLQLQEKHDVQIPCCLDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTI 1137
Query: 1138 DLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG 1174
D+LAQIPKLPD+D LQ NA+ ASNVMDRPPISELAG
Sbjct: 1138 DILAQIPKLPDIDPLLQSNAMTASNVMDRPPISELAG 1174
>gi|296086480|emb|CBI32069.3| unnamed protein product [Vitis vinifera]
Length = 1064
Score = 1768 bits (4580), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1062 (81%), Positives = 957/1062 (90%), Gaps = 4/1062 (0%)
Query: 117 SSPAPSWR-EEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGS 175
+S AP+ R +EFKWQRVEKLCNEV+EFG E+IDV+ELASIYDFRIDKFQR +I+AFLRGS
Sbjct: 3 TSEAPASRSDEFKWQRVEKLCNEVREFGEELIDVEELASIYDFRIDKFQRLAIQAFLRGS 62
Query: 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLT 235
SVVVSAPTSSGKTLIAEAAAVATV+ RR+FYTTPLKALSNQKFREFRETFGDNNVGLLT
Sbjct: 63 SVVVSAPTSSGKTLIAEAAAVATVSRGRRLFYTTPLKALSNQKFREFRETFGDNNVGLLT 122
Query: 236 GDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWE 295
GDSA+N++AQ+LIMTTEILRNMLYQSVGMVSS SGLF VDVIVLDEVHYLSDI RGTVWE
Sbjct: 123 GDSAVNKDAQVLIMTTEILRNMLYQSVGMVSSGSGLFHVDVIVLDEVHYLSDIYRGTVWE 182
Query: 296 EIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLP 355
EI+IYCPKEVQ+ICLSATVAN DELAGWI QIHGKTEL+TSS+RPVPLTW+FSTKT+LLP
Sbjct: 183 EIVIYCPKEVQLICLSATVANPDELAGWISQIHGKTELVTSSKRPVPLTWHFSTKTSLLP 242
Query: 356 LLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH-ADMNSNNIVTSFGQHQLS 414
LLDEKGK MNRKLSL+YLQ S YKD SRRRN +K +DM+ ++ + GQ LS
Sbjct: 243 LLDEKGKSMNRKLSLSYLQNYASGDNSYKDERSRRRNLKKRESDMSYSSFASIHGQSSLS 302
Query: 415 KNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE 474
KN IN IRRSQVPQV+DTLWHL++RDMLPAIWFIF+R+GCDA+VQYLEDCNLLDE EMSE
Sbjct: 303 KNDINTIRRSQVPQVMDTLWHLKARDMLPAIWFIFSRKGCDASVQYLEDCNLLDESEMSE 362
Query: 475 VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 534
V+LALKRFR+ YPDAVRE A+KGLL+GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATET
Sbjct: 363 VDLALKRFRLQYPDAVRESAVKGLLQGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATET 422
Query: 535 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 594
LAAGINMPARTAV+SSLSKR SGRIQL+SNEL QMAGRAGRRGID GH VLVQTPY+G
Sbjct: 423 LAAGINMPARTAVISSLSKRGESGRIQLSSNELLQMAGRAGRRGIDESGHAVLVQTPYDG 482
Query: 595 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 654
AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV +ES+D+K LQAGR+LEEARKL
Sbjct: 483 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVTRRLSESNDLKVLQAGRTLEEARKL 542
Query: 655 VEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQ 714
VEQSFGNYVGSNVMLAAK+EL K++KE +VL+SE++DDAIDRKSR+LLSE AY E+ANLQ
Sbjct: 543 VEQSFGNYVGSNVMLAAKEELTKVEKEIEVLSSEVTDDAIDRKSRKLLSEMAYNEIANLQ 602
Query: 715 EELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLG 774
EEL+AEKR RTELRRRMEL+R SALK +LK+ ENGHLPF+CLQYKDSE V+H VPAVYLG
Sbjct: 603 EELRAEKRLRTELRRRMELRRMSALKLLLKESENGHLPFVCLQYKDSEDVQHLVPAVYLG 662
Query: 775 KFDSLDSSKLKNMASINDSFALNRLA-QSNGDDYDTQ-DVKPSYYVALGSDNTWYTFTEK 832
K DS D SK+KNM ND FALN + + N DD D+Q + KPSYYVALGSDN+WY FTEK
Sbjct: 663 KVDSFDGSKVKNMVYTNDCFALNAVVTELNVDDTDSQPNGKPSYYVALGSDNSWYLFTEK 722
Query: 833 WIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSW 892
WIKTVYR GFPNVALAQGDALPRE M LLDK ++ WE+LA SE GGLWC+EGSLETWSW
Sbjct: 723 WIKTVYRTGFPNVALAQGDALPREIMRALLDKADIQWEELAKSELGGLWCIEGSLETWSW 782
Query: 893 SLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTV 952
SLNVPVLSSLSE DEVL MS Y++AVE YKEQR KV+RLKKKIARTEGFKEYKKI+D
Sbjct: 783 SLNVPVLSSLSEDDEVLKMSQAYYEAVECYKEQRNKVSRLKKKIARTEGFKEYKKIIDMS 842
Query: 953 KFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAA 1012
KFTEEKIKRLKARS RL+ RIEQIEPSGWKEFL++SNVIHETRALDINT +IFPLGETAA
Sbjct: 843 KFTEEKIKRLKARSNRLSSRIEQIEPSGWKEFLQVSNVIHETRALDINTHIIFPLGETAA 902
Query: 1013 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 1072
AIRGENELWLAMVLR+K+LL LKPAQLAAVC SLVSEGIKVR WKNNS IYE STTVINV
Sbjct: 903 AIRGENELWLAMVLRSKVLLGLKPAQLAAVCGSLVSEGIKVRPWKNNSYIYEASTTVINV 962
Query: 1073 INVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARL 1132
I++LDE R+S L+LQEKH V+IPCCLDSQFSGMVEAWASGLTWRE+MMDCA+D+GDLARL
Sbjct: 963 ISLLDEQRNSLLQLQEKHDVQIPCCLDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARL 1022
Query: 1133 LRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG 1174
LRRTID+LAQIPKLPD+D LQ NA+ ASNVMDRPPISELAG
Sbjct: 1023 LRRTIDILAQIPKLPDIDPLLQSNAMTASNVMDRPPISELAG 1064
>gi|255558340|ref|XP_002520197.1| helicase, putative [Ricinus communis]
gi|223540689|gb|EEF42252.1| helicase, putative [Ricinus communis]
Length = 1161
Score = 1703 bits (4411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 874/1150 (76%), Positives = 980/1150 (85%), Gaps = 14/1150 (1%)
Query: 31 SHTLGFCIPKPLL---SSNSIQFQASYKSPKSFFPTEHKLTDADEAADEYDDDIDDDDDE 87
S TLGFC PKPL S S QF+ S+KSP S P + L+DA++ D+ DD E
Sbjct: 20 SRTLGFCSPKPLHFSPSHFSFQFKLSFKSPTSPLPIDSHLSDAEDDDDDDDD-------E 72
Query: 88 EAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAPSWR-EEFKWQRVEKLCNEVKEFGNEM 146
EAADEYD SGE S E + ++ +S + +WR EE K QRV+K+ NEVK+FGN+
Sbjct: 73 EAADEYDYFSGESSVEEIEENETELISVTTEDL-TWRNEESKKQRVDKIVNEVKQFGNDF 131
Query: 147 IDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIF 206
IDV ELASIYDFRIDKFQR +IEAFL+G SVVVSAPTSSGKTLIAEAAAVATVA RRIF
Sbjct: 132 IDVHELASIYDFRIDKFQRLAIEAFLKGCSVVVSAPTSSGKTLIAEAAAVATVARGRRIF 191
Query: 207 YTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVS 266
YTTPLKALSNQKFR+FRETFGD NVGLLTGDSA+N++AQ+LIMTTEILRNMLYQS+GMVS
Sbjct: 192 YTTPLKALSNQKFRDFRETFGDENVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSIGMVS 251
Query: 267 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326
S SGLF VDVIVLDEVH+LSDISRGTVWEEI+IYCPK+VQ+ICLSATV N +ELAGWI +
Sbjct: 252 SGSGLFHVDVIVLDEVHFLSDISRGTVWEEIVIYCPKKVQLICLSATVKNPEELAGWINE 311
Query: 327 IHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
+HGKTEL+TSS+RPVPLTW+FSTKT+L PLLDEKGKHMNRKLSLNYLQLS S VK YKD
Sbjct: 312 VHGKTELVTSSKRPVPLTWHFSTKTSLFPLLDEKGKHMNRKLSLNYLQLSASGVKSYKDD 371
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
G RRRNSRK N + S LSKN I IRRS VPQV+DTL L+ RDMLPAIW
Sbjct: 372 GPRRRNSRKRGSNMGINSIASMSGEPLSKNDIGRIRRSLVPQVVDTLTQLKVRDMLPAIW 431
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 506
FIFNRRGCDAA+QYLE C LLDECE SEVELALKRF I PDAVRE A+KGLLKGVAAHH
Sbjct: 432 FIFNRRGCDAAMQYLEGCKLLDECETSEVELALKRFSIQNPDAVRETAVKGLLKGVAAHH 491
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
AGCLP+WKSFIEELFQRGL+KVVFATETLAAGINMPARTAV+SSLSKR++SGRIQL+ NE
Sbjct: 492 AGCLPLWKSFIEELFQRGLIKVVFATETLAAGINMPARTAVISSLSKRSSSGRIQLSPNE 551
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
L QMAGRAGRRGID RGHVVLVQTP E AEECCKLLFAG++PLVSQFTASYGMVLNLLAG
Sbjct: 552 LLQMAGRAGRRGIDERGHVVLVQTPNEDAEECCKLLFAGLKPLVSQFTASYGMVLNLLAG 611
Query: 627 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLT 686
AKV H+SNESD++K LQAGR+LEEARKLVEQSFG Y+GSNVMLA+++EL + Q+E + L
Sbjct: 612 AKVTHISNESDNIKVLQAGRTLEEARKLVEQSFGTYIGSNVMLASREELARTQEEIEKLM 671
Query: 687 SEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDF 746
SEISDDAIDRKSR+ LSE YKE+A+LQE+L+ EKR RTELRR ME+KR SALK + ++
Sbjct: 672 SEISDDAIDRKSRQTLSEEPYKEIADLQEQLREEKRLRTELRRIMEVKRLSALKLLFEEL 731
Query: 747 ENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNR-LAQSNGD 805
N HLPFLC+QYKDSEGVEHSVP VY+GK DS DSSKLKNM S +DSFA N + QS
Sbjct: 732 GNDHLPFLCIQYKDSEGVEHSVPVVYMGKADSTDSSKLKNMVSTSDSFATNAVIVQSIAS 791
Query: 806 DYDT-QDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDK 864
+ +T +D+ P YYVALGSDN+WY FTEKW+KT+YR GFPNVALAQGDA+PRE M LLDK
Sbjct: 792 EVETVEDLVPCYYVALGSDNSWYLFTEKWVKTIYRTGFPNVALAQGDAVPREVMRKLLDK 851
Query: 865 GEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKE 924
E WEKLADSE GGLW MEGSLETWSWSLNVPVL+SLSE+DEVLH S YHDAVE+YK
Sbjct: 852 EEKQWEKLADSELGGLWYMEGSLETWSWSLNVPVLNSLSENDEVLHGSQAYHDAVEHYKG 911
Query: 925 QRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEF 984
QRTKVARLKKKIARTEGF+EYKKI+D FTE+KIKRLKARS RL RIE+IEPSGWKEF
Sbjct: 912 QRTKVARLKKKIARTEGFREYKKILDWKSFTEDKIKRLKARSNRLINRIEEIEPSGWKEF 971
Query: 985 LRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCA 1044
L+ISNV+HE RALDINTQVIFPLGETAAAIRGENELWLAMVLR+KILLDLKPAQLAAVCA
Sbjct: 972 LKISNVVHEIRALDINTQVIFPLGETAAAIRGENELWLAMVLRSKILLDLKPAQLAAVCA 1031
Query: 1045 SLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSG 1104
S+VSEGIKVR W+NNS IYEPS+ V N+I L+E RSS L+LQEKHGVEI C LDSQFSG
Sbjct: 1032 SVVSEGIKVRAWENNSYIYEPSSAVFNIIGKLEEQRSSLLQLQEKHGVEISCYLDSQFSG 1091
Query: 1105 MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVM 1164
MVEAWASGL+W+EMMMDCA+DDGDLARL+R+TIDLLAQIPKLPD+D LQ NA A ++M
Sbjct: 1092 MVEAWASGLSWKEMMMDCAMDDGDLARLIRQTIDLLAQIPKLPDIDPALQSNAKTAYDIM 1151
Query: 1165 DRPPISELAG 1174
DRPPISEL+G
Sbjct: 1152 DRPPISELSG 1161
>gi|291464071|gb|ADE05573.1| increased size exclusion limit 2 [Nicotiana benthamiana]
Length = 1159
Score = 1672 bits (4331), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 850/1172 (72%), Positives = 978/1172 (83%), Gaps = 24/1172 (2%)
Query: 12 TFPVFANTKPFSFHQFHTLS--------HTLGFCIPKPLLSSNSIQFQASYKSPKSFFPT 63
T P+ P + +LS T GFC K + S + + YK +S FPT
Sbjct: 3 TLPILFFPSPSPLNSETSLSPFLPLLQIQTPGFCSVKSSRTPYSSKSRIFYKFTRSIFPT 62
Query: 64 EHKLTDADEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAPSW 123
E + D DE DE +DD DDD+E A + + VS EVSD ++ S
Sbjct: 63 ESQDEDEDEYEDEEEDD--DDDEEAAEEYDNVVSAEVSD---GGEESDSELESSVSEVLN 117
Query: 124 REEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPT 183
EE K QRVEKL EV+EFG+E+ID +ELASIY FRIDKFQR +I+AFLRGSSVVVSAPT
Sbjct: 118 IEETKKQRVEKLRGEVREFGDEIIDANELASIYSFRIDKFQRLAIQAFLRGSSVVVSAPT 177
Query: 184 SSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINRE 243
SSGKTLIAEAAAVATVA RR+FYTTPLKALSNQKFREF ETFG++NVGLLTGDSA+NR+
Sbjct: 178 SSGKTLIAEAAAVATVAKGRRLFYTTPLKALSNQKFREFCETFGESNVGLLTGDSAVNRD 237
Query: 244 AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK 303
AQ+LIMTTEILRNMLYQSVG+ SS+ GL VDVIVLDEVHYLSDISRGTVWEEI+IYCPK
Sbjct: 238 AQVLIMTTEILRNMLYQSVGVASSDGGLLHVDVIVLDEVHYLSDISRGTVWEEIVIYCPK 297
Query: 304 EVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKH 363
EVQ+ICLSATVAN DELAGWIGQIHG+TEL+TSS+RPVPLTW+F TKTAL+PLLD+KG
Sbjct: 298 EVQLICLSATVANPDELAGWIGQIHGRTELVTSSKRPVPLTWHFGTKTALVPLLDDKGTS 357
Query: 364 MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 423
MNRKLSLNYLQ S + YK+ GS+RR SRK N++ LSKN IN IRR
Sbjct: 358 MNRKLSLNYLQYDESASELYKEEGSKRRKSRKR----ENDV------RPLSKNDINNIRR 407
Query: 424 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFR 483
SQVPQ+IDTLWHL++RDMLPA+WFIF+R+GCDAAVQYLEDC LLDECE SEVELALKRFR
Sbjct: 408 SQVPQIIDTLWHLKARDMLPAVWFIFSRKGCDAAVQYLEDCRLLDECETSEVELALKRFR 467
Query: 484 ILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 543
I YPDAVR A+KGL +GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPA
Sbjct: 468 IQYPDAVRVSAVKGLRRGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPA 527
Query: 544 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 603
RTAV+SSLSKR SG +QL+SNEL QMAGRAGRRGID +GHVVLVQTPYEG EECCK+LF
Sbjct: 528 RTAVISSLSKRGDSGLVQLSSNELLQMAGRAGRRGIDEKGHVVLVQTPYEGPEECCKVLF 587
Query: 604 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 663
+G++PLVSQFTASYGMVLNLLAGAKV S+E D++K +AGR+LEEARKL+EQSFGNYV
Sbjct: 588 SGLQPLVSQFTASYGMVLNLLAGAKVTRRSSELDEIKVSRAGRTLEEARKLIEQSFGNYV 647
Query: 664 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRF 723
GSNVMLAAK+EL +I+KE + LTSEIS++AIDRKS++LL++ AY+E+A LQEEL+AEKR
Sbjct: 648 GSNVMLAAKEELARIEKEIETLTSEISEEAIDRKSQKLLAQTAYQEIAELQEELRAEKRL 707
Query: 724 RTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSK 783
RTELRR+MEL+R +LK +LK+ E+GHLPF+ L Y DS+GV+H V AVYLGK D+L+ K
Sbjct: 708 RTELRRKMELERVFSLKPLLKELEDGHLPFMSLHYSDSDGVQHLVAAVYLGKVDTLNIEK 767
Query: 784 LKNMASINDSFALNRLAQS-NGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGF 842
LK+M D+FAL + ++ D +DVKPSY+VALGSDN+WY FTEKWI+ VYR GF
Sbjct: 768 LKSMVRDYDAFALKTVVENFEVGDIGGEDVKPSYHVALGSDNSWYLFTEKWIRMVYRTGF 827
Query: 843 PNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSL 902
PNVALA GDALPRE M+ LLDK EM W+KLA SE GGLWC+EGSLETWSWSLNVPVLSSL
Sbjct: 828 PNVALALGDALPREIMTELLDKAEMQWQKLAVSELGGLWCLEGSLETWSWSLNVPVLSSL 887
Query: 903 SESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRL 962
SE DEVL +S Y+DAVE YK QR KV+RLKK+IARTEGFKEYKKI+D+ KFT+EKI+RL
Sbjct: 888 SEEDEVLQLSQAYNDAVECYKNQRNKVSRLKKRIARTEGFKEYKKIIDSAKFTQEKIRRL 947
Query: 963 KARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWL 1022
K RSKRL RIEQIEP+GWKEFL++SNVIHE+RALDINT VIFPLGETAAAIRGENELWL
Sbjct: 948 KVRSKRLIGRIEQIEPTGWKEFLQVSNVIHESRALDINTHVIFPLGETAAAIRGENELWL 1007
Query: 1023 AMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSS 1082
AMVLRNK+LLDLKPAQLAAVC SLVSEGI++R WKNNS +YEPSTTV+NVI++L+E +SS
Sbjct: 1008 AMVLRNKLLLDLKPAQLAAVCGSLVSEGIRLRPWKNNSFVYEPSTTVLNVIDLLEETKSS 1067
Query: 1083 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 1142
LELQEKHGV+IPCCLDSQFSGMVEAWASGLTW+E+MMDCA+D+GDLARLLRRTIDLLAQ
Sbjct: 1068 ILELQEKHGVQIPCCLDSQFSGMVEAWASGLTWKEIMMDCAMDEGDLARLLRRTIDLLAQ 1127
Query: 1143 IPKLPDVDQRLQKNAVDASNVMDRPPISELAG 1174
IPKLPD+D LQ NA AS+VMDRPPISELAG
Sbjct: 1128 IPKLPDIDPLLQSNAKGASSVMDRPPISELAG 1159
>gi|356497806|ref|XP_003517748.1| PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2,
chloroplastic-like [Glycine max]
Length = 1162
Score = 1669 bits (4322), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 833/1090 (76%), Positives = 937/1090 (85%), Gaps = 19/1090 (1%)
Query: 89 AADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMID 148
+ADEYDDV GE SD DE +V S + FKWQRV+KLCNEV+EFG ++ID
Sbjct: 88 SADEYDDVLGEASD------DEADVFSP-------HDGFKWQRVDKLCNEVREFGADLID 134
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
VDELAS+YDFRIDKFQR +I AFLRG SVVVSAPTSSGKTLIAEAAAVATVA RRIFYT
Sbjct: 135 VDELASVYDFRIDKFQRQAILAFLRGFSVVVSAPTSSGKTLIAEAAAVATVARGRRIFYT 194
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TPLKALSNQKFREFRETFG +NVGLLTGDSA+N++AQ+LIMTTEILRNMLYQSVG VSS
Sbjct: 195 TPLKALSNQKFREFRETFGGSNVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSG 254
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
SGL +VDVIVLDEVHYLSDISRGTVWEEI+IYCPKEVQ+ICLSATVAN DELAGWIGQIH
Sbjct: 255 SGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIH 314
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
G+TEL+TSS+RPVPLTW+FS K +LLPLL+EKG HMNRKLSLNYLQL + KPYKD S
Sbjct: 315 GETELVTSSKRPVPLTWHFSLKNSLLPLLNEKGTHMNRKLSLNYLQLQAAVAKPYKDDWS 374
Query: 389 RRRNSRKHADMNS-NNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
R+RN RK ++ ++ F Q LSKN+INAIRRSQVPQVIDTLW L+SRDMLPAIWF
Sbjct: 375 RKRNPRKRGTLSGYDSDDNMFEQRSLSKNNINAIRRSQVPQVIDTLWQLQSRDMLPAIWF 434
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 507
IF+R+GCDAAVQYLE+C LLDECE SEVELALKRFR YPDAVRE A++GLL+GVAAHHA
Sbjct: 435 IFSRKGCDAAVQYLENCKLLDECESSEVELALKRFRKQYPDAVRESAVRGLLEGVAAHHA 494
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
GCLP+WK+FIEELFQRGLVKVVFATETLAAGINMPARTAV+SSLSKR SGRI L+SNEL
Sbjct: 495 GCLPLWKAFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRGDSGRIPLSSNEL 554
Query: 568 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 627
QMAGRAGRRGID GHVVL+QTP EGAEE CK+LFAG+EPLVSQFTASYGMVLNLLAG
Sbjct: 555 LQMAGRAGRRGIDENGHVVLIQTPNEGAEEGCKVLFAGLEPLVSQFTASYGMVLNLLAGV 614
Query: 628 KVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTS 687
K +H SNESD+MK G++LEEARKLVEQSFGNYV SNVMLAAK+E+ KI+KE + L S
Sbjct: 615 KAIHRSNESDNMKP-STGKTLEEARKLVEQSFGNYVSSNVMLAAKEEINKIEKEIEFLMS 673
Query: 688 EISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFE 747
EI+D+AIDRKSR+ LS YKE+A L E+L+AEKR R+ELR++ E KR SALK +L++ E
Sbjct: 674 EITDEAIDRKSRKALSPRQYKEIAELLEDLRAEKRVRSELRKQKEAKRISALKPLLEEPE 733
Query: 748 NGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDY 807
+GHLPFLCLQY+DSEGVEHS+PAV+LGK DSL++SKLK+M S DSFALN LA +
Sbjct: 734 SGHLPFLCLQYRDSEGVEHSIPAVFLGKVDSLNASKLKDMISSVDSFALN-LADAEPSVA 792
Query: 808 DTQ---DVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDK 864
D++ D+KPSY+VALGSDNTWY FTEKWIKTVY GFPNV LA+GDA PRE MS+LLDK
Sbjct: 793 DSELKDDLKPSYHVALGSDNTWYLFTEKWIKTVYGTGFPNVPLAEGDARPREIMSILLDK 852
Query: 865 GEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKE 924
+M W+KL+ SE GGLW MEGSL+TWSWSLNVPVLSSLSE+DE+L S +Y DA+E YKE
Sbjct: 853 EDMKWDKLSHSEHGGLWFMEGSLDTWSWSLNVPVLSSLSENDELLLQSQDYKDAIERYKE 912
Query: 925 QRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEF 984
QR KV+RLKKKI R+EG+KEY KI+D VKFTEEKIKRLK RSKRL RIEQIEPSGWKEF
Sbjct: 913 QRNKVSRLKKKIVRSEGYKEYFKIIDAVKFTEEKIKRLKNRSKRLINRIEQIEPSGWKEF 972
Query: 985 LRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCA 1044
+++SNVIHE RALDINT +IFPLGETAAAIRGENELWLAMVLRNKILL+LKPAQLAAVCA
Sbjct: 973 MQVSNVIHEIRALDINTHIIFPLGETAAAIRGENELWLAMVLRNKILLELKPAQLAAVCA 1032
Query: 1045 SLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSG 1104
SLVS GIKVR KNNS IYEPS TV I +LDE RS+ L +Q+KH V I CCLDSQF G
Sbjct: 1033 SLVSAGIKVRPGKNNSYIYEPSATVTKFITLLDEQRSALLAMQDKHEVTISCCLDSQFCG 1092
Query: 1105 MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVM 1164
MVEAWASGLTWRE+MMDCA+DDGDLARLLRRTIDLL QIPKLPD+D L+ NA AS+VM
Sbjct: 1093 MVEAWASGLTWRELMMDCAMDDGDLARLLRRTIDLLVQIPKLPDIDPLLKHNAKAASSVM 1152
Query: 1165 DRPPISELAG 1174
DRPPISEL G
Sbjct: 1153 DRPPISELVG 1162
>gi|15223032|ref|NP_177164.1| DEAD-box ATP-dependent RNA helicase ISE2 [Arabidopsis thaliana]
gi|298351833|sp|B9DFG3.2|ISE2_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase ISE2,
chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 25;
AltName: Full=Protein INCREASED SIZE EXCLUSION LIMIT 2;
AltName: Full=Protein PIGMENT DEFECTIVE 317; Flags:
Precursor
gi|332196892|gb|AEE35013.1| DEAD-box ATP-dependent RNA helicase ISE2 [Arabidopsis thaliana]
Length = 1171
Score = 1644 bits (4256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 820/1181 (69%), Positives = 976/1181 (82%), Gaps = 28/1181 (2%)
Query: 11 TTFPVFANTKPFSFHQFH------TLSHTLGFCIPKPL-LSSNSIQFQASYKSPKSFFPT 63
T PV + T SF FH +LSH+ F K L L+ N + F+++ S P+
Sbjct: 2 NTLPVVSLTASSSFKFFHFPSLHRSLSHSPNFSFTKSLILNPNHLSFKSTLNS---LSPS 58
Query: 64 EHKLTDADEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSD-----DEFEVSSDSS 118
+ +L + ++ +E ++D E+ DE D +SDEI+ SD +E E S D
Sbjct: 59 QSQLYEEEDDEEEEEED------EDDDDEAADEYDNISDEIRNSDDDDDDEETEFSVDL- 111
Query: 119 PAPSWRE--EFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSS 176
P S RE EF+WQRVEKL + V++FG EMID+DEL SIYDFRIDKFQR +IEAFLRGSS
Sbjct: 112 PTESARERVEFRWQRVEKLRSLVRDFGVEMIDIDELISIYDFRIDKFQRLAIEAFLRGSS 171
Query: 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236
VVVSAPTSSGKTLIAEAAAV+TVA RR+FYTTPLKALSNQKFREFRETFGD+NVGLLTG
Sbjct: 172 VVVSAPTSSGKTLIAEAAAVSTVAKGRRLFYTTPLKALSNQKFREFRETFGDDNVGLLTG 231
Query: 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEE 296
DSAIN++AQI+IMTTEILRNMLYQSVGM SS +GLF VD IVLDEVHYLSDISRGTVWEE
Sbjct: 232 DSAINKDAQIVIMTTEILRNMLYQSVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEE 291
Query: 297 IIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPL 356
I+IYCPKEVQ+ICLSATVAN DELAGWIG+IHGKTEL+TS+RRPVPLTWYFSTK +LLPL
Sbjct: 292 IVIYCPKEVQLICLSATVANPDELAGWIGEIHGKTELVTSTRRPVPLTWYFSTKHSLLPL 351
Query: 357 LDEKGKHMNRKLSLNYLQLSTSEVK--PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLS 414
LDEKG ++NRKLSLNYLQLS SE + DG +RR+ ++ D + NN+V + + LS
Sbjct: 352 LDEKGINVNRKLSLNYLQLSASEARFRDDDDGYRKRRSKKRGGDTSYNNLV-NVTDYPLS 410
Query: 415 KNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE 474
KN IN IRRSQVPQ+ DTLWHL+ ++MLPAIWFIFNRRGCDAAVQY+E+ LLD+CE SE
Sbjct: 411 KNEINKIRRSQVPQISDTLWHLQGKNMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSE 470
Query: 475 VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 534
VELALK+FR+LYPDAVRE A KGLL+G+AAHHAGCLP+WKSFIEELFQRGLVKVVFATET
Sbjct: 471 VELALKKFRVLYPDAVRESAEKGLLRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATET 530
Query: 535 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 594
LAAGINMPARTAV+SSLSK+ + RI+L NEL+QMAGRAGRRGID +G+ VLVQT +EG
Sbjct: 531 LAAGINMPARTAVISSLSKKAGNERIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEG 590
Query: 595 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 654
AEECCKL+FAGV+PLVSQFTASYGMVLNL+AG+KV S+ ++ K LQAGRSLEEA+KL
Sbjct: 591 AEECCKLVFAGVKPLVSQFTASYGMVLNLVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKL 650
Query: 655 VEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQ 714
VE+SFGNYV SNV +AAK EL +I + ++L+SEISD+AID+KSR+LLS YKE+ L+
Sbjct: 651 VEKSFGNYVSSNVTVAAKQELAEIDNKIEILSSEISDEAIDKKSRKLLSARDYKEITVLK 710
Query: 715 EELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLG 774
EEL+ EKR R E RRRMEL+RF ALK +LK E G+LPF+CL++KDSEG E SVPAVYLG
Sbjct: 711 EELREEKRKRAEQRRRMELERFLALKPLLKGMEEGNLPFICLEFKDSEGREQSVPAVYLG 770
Query: 775 KFDSLDSSKLKNMASINDSFALNRLA-QSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKW 833
DS SKL+ M S+++SFALN + + D+ +VKPSYYVALGSDN+WY FTEKW
Sbjct: 771 HIDSFQGSKLQKMMSLDESFALNLIEDELAADEPGKPNVKPSYYVALGSDNSWYLFTEKW 830
Query: 834 IKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWS 893
++TVYR GFPN+ALA GDALPRE M LLDK +M W+KLA+SE G LW +EGSLETWSWS
Sbjct: 831 VRTVYRTGFPNIALALGDALPREIMKNLLDKADMQWDKLAESELGSLWRLEGSLETWSWS 890
Query: 894 LNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVK 953
LNVPVLSSLS+ DEVLHMS EY +A + YKEQR+K++RLKKK++R+EGF+EYKKI++
Sbjct: 891 LNVPVLSSLSDEDEVLHMSEEYDNAAQKYKEQRSKISRLKKKMSRSEGFREYKKILENAN 950
Query: 954 FTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAA 1013
T EK+KRLKARS+RL R+EQIEPSGWK+F+RISNVIHE+RALDINT +IFPLGETAAA
Sbjct: 951 LTVEKMKRLKARSRRLINRLEQIEPSGWKDFMRISNVIHESRALDINTHLIFPLGETAAA 1010
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
IRGENELWLAMVLRNK L+DLKP QLA VCASLVSEGIKVR W++N+ IYEPS TV++++
Sbjct: 1011 IRGENELWLAMVLRNKALVDLKPPQLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMV 1070
Query: 1074 NVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 1133
N L++ RSS ++LQEKH V IPCCLD QFSGMVEAWASGL+W+EMMM+CA+D+GDLARLL
Sbjct: 1071 NFLEDQRSSLIKLQEKHEVMIPCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLL 1130
Query: 1134 RRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG 1174
RRTIDLLAQIPKLPD+D LQ++A A+++MDRPPISELAG
Sbjct: 1131 RRTIDLLAQIPKLPDIDPVLQRSAAAAADIMDRPPISELAG 1171
>gi|222422993|dbj|BAH19480.1| AT1G70070 [Arabidopsis thaliana]
Length = 1171
Score = 1644 bits (4256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 820/1180 (69%), Positives = 973/1180 (82%), Gaps = 26/1180 (2%)
Query: 11 TTFPVFANTKPFSFHQFH------TLSHTLGFCIPKPL-LSSNSIQFQASYKSPKSFFPT 63
T PV + T SF FH +LSH+ F K L L+ N + F+++ S P+
Sbjct: 2 NTLPVVSLTASSSFKFFHFPSLHRSLSHSPNFSFTKSLILNPNHLSFKSTLNS---LSPS 58
Query: 64 EHKLTDADEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSD-----DEFEVSSDSS 118
+ +L + ++ +E ++D E+ DE D +SDEI+ SD +E E S D
Sbjct: 59 QSQLYEEEDDEEEEEED------EDDDDEAADEYDNISDEIRNSDDDDDDEETEFSVDL- 111
Query: 119 PAPSWRE--EFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSS 176
P S RE EF+WQRVEKL + V++FG EMID+DEL SIYDFRIDKFQR +IEAFLRGSS
Sbjct: 112 PTESARERVEFRWQRVEKLRSLVRDFGVEMIDIDELISIYDFRIDKFQRLAIEAFLRGSS 171
Query: 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236
VVVSAPTSSGKTLIAEAAAV+TVA RR+FYTTPLKALSNQKFREFRETFGD+NVGLLTG
Sbjct: 172 VVVSAPTSSGKTLIAEAAAVSTVAKGRRLFYTTPLKALSNQKFREFRETFGDDNVGLLTG 231
Query: 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEE 296
DSAIN++AQI+IMTTEILRNMLYQSVGM SS +GLF VD IVLDEVHYLSDISRGTVWEE
Sbjct: 232 DSAINKDAQIVIMTTEILRNMLYQSVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEE 291
Query: 297 IIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPL 356
I+IYCPKEVQ+ICLSATVAN DELAGWIG+IHGKTEL+TS+RRPVPLTWYFSTK +LLPL
Sbjct: 292 IVIYCPKEVQLICLSATVANPDELAGWIGEIHGKTELVTSTRRPVPLTWYFSTKHSLLPL 351
Query: 357 LDEKGKHMNRKLSLNYLQLSTSEVKPYKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSK 415
LDEKG ++NRKLSLNYLQLS SE + D G R+R S+K S N + + + LSK
Sbjct: 352 LDEKGINVNRKLSLNYLQLSASEARFRDDDDGYRKRRSKKRGGNTSYNNLVNVTDYPLSK 411
Query: 416 NSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV 475
N IN IRRSQVPQ+ DTLWHL+ ++MLPAIWFIFNRRGCDAAVQY+E+ LLD+CE SEV
Sbjct: 412 NEINKIRRSQVPQISDTLWHLQGKNMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEV 471
Query: 476 ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 535
ELALK+FR+LYPDAVRE A KGLL+G+AAHHAGCLP+WKSFIEELFQRGLVKVVFATETL
Sbjct: 472 ELALKKFRVLYPDAVRESAEKGLLRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETL 531
Query: 536 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 595
AAGINMPARTAV+SSLSK+ + RI+L NEL+QMAGRAGRRGID +G+ VLVQT +EGA
Sbjct: 532 AAGINMPARTAVISSLSKKAGNERIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGA 591
Query: 596 EECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV 655
EECCKL+FAGV+PLVSQFTASYGMVLNL+AG+KV S+ ++ K LQAGRSLEEA+KLV
Sbjct: 592 EECCKLVFAGVKPLVSQFTASYGMVLNLVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKLV 651
Query: 656 EQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQE 715
E+SFGNYV SNV +AAK EL +I + ++L+SEISD+AID+KSR+LLS YKE+ L+E
Sbjct: 652 EKSFGNYVSSNVTVAAKQELAEIDNKIEILSSEISDEAIDKKSRKLLSARDYKEITVLKE 711
Query: 716 ELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGK 775
EL+ EKR R E RRRMEL+RF ALK +LK E G+LPF+CL++KDSEG E SVPAVYLG
Sbjct: 712 ELREEKRKRAEQRRRMELERFLALKPLLKGMEEGNLPFICLEFKDSEGREQSVPAVYLGH 771
Query: 776 FDSLDSSKLKNMASINDSFALNRLA-QSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWI 834
DS SKL+ M S+++SFALN + + D+ +VKPSYYVALGSDN+WY FTEKW+
Sbjct: 772 IDSFQGSKLQKMMSLDESFALNLIEDELAADEPGKPNVKPSYYVALGSDNSWYLFTEKWV 831
Query: 835 KTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSL 894
+TVYR GFPN+ALA GDALPRE M LLDK +M W+KLA+SE G LW +EGSLETWSWSL
Sbjct: 832 RTVYRTGFPNIALALGDALPREIMKNLLDKADMQWDKLAESELGSLWRLEGSLETWSWSL 891
Query: 895 NVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKF 954
NVPVLSSLS+ DEVLHMS EY +A + YKEQR+K++RLKKK++R+EGF+EYKKI++
Sbjct: 892 NVPVLSSLSDEDEVLHMSEEYDNAAQKYKEQRSKISRLKKKMSRSEGFREYKKILENANL 951
Query: 955 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAI 1014
T EK+KRLKARS+RL R+EQIEPSGWK+F+RISNVIHE+RALDINT +IFPLGETAAAI
Sbjct: 952 TVEKMKRLKARSRRLINRLEQIEPSGWKDFMRISNVIHESRALDINTHLIFPLGETAAAI 1011
Query: 1015 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 1074
RGENELWLAMVLRNK L+DLKP QLA VCASLVSEGIKVR W++N+ IYEPS TV++++N
Sbjct: 1012 RGENELWLAMVLRNKALVDLKPPQLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVN 1071
Query: 1075 VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLR 1134
L++ RSS ++LQEKH V IPCCLD QFSGMVEAWASGL+W+EMMM+CA+D+GDLARLLR
Sbjct: 1072 FLEDQRSSLIKLQEKHEVMIPCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLR 1131
Query: 1135 RTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG 1174
RTIDLLAQIPKLPD+D LQ++A A+++MDRPPISELAG
Sbjct: 1132 RTIDLLAQIPKLPDIDPVLQRSAAAAADIMDRPPISELAG 1171
>gi|449486574|ref|XP_004157336.1| PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2,
chloroplastic-like [Cucumis sativus]
Length = 1168
Score = 1643 bits (4254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 830/1157 (71%), Positives = 966/1157 (83%), Gaps = 16/1157 (1%)
Query: 22 FSFHQFHTLSHTLG-FCIPKPL--LSSNSIQFQASYKSPKSFFPTEHKLTDADEAADEYD 78
+ F F T ++ FC KPL S+ + F+ S+ SP+S F + +L+D DE DE +
Sbjct: 24 YPFPSFLTPHYSASRFCPHKPLAFYSTRPVPFRPSFHSPRSIFSEKSQLSDVDEDEDEDE 83
Query: 79 DDIDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAPSWREEFKWQRVEKLCNE 138
D+ D+DD + D + G +QS DE E+S D+S + +EFKWQRVEKL E
Sbjct: 84 DEDDEDDVAAEEYDSDALGG-----FEQSYDEVELSMDTSEISNASQEFKWQRVEKLLGE 138
Query: 139 VKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVAT 198
V+EFG +IDVDELAS+Y+FRIDKFQR +++AFLRGSSVVVSAPTSSGKTLIAEAAAVAT
Sbjct: 139 VREFGEGIIDVDELASVYNFRIDKFQRLAVQAFLRGSSVVVSAPTSSGKTLIAEAAAVAT 198
Query: 199 VANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNML 258
VA +RR+FYTTPLKALSNQKFREFRETFGD+NVGLLTGDSA+N++A +LIMTTEILRNML
Sbjct: 199 VARKRRLFYTTPLKALSNQKFREFRETFGDSNVGLLTGDSAVNKDAPVLIMTTEILRNML 258
Query: 259 YQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANAD 318
YQSVGM +S SGLF VDVIVLDEVHYLSDISRGTVWEEI+IYCPKEVQ+ICLSATVAN D
Sbjct: 259 YQSVGMATSASGLFHVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPD 318
Query: 319 ELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTS 378
ELAGWIGQIHGKTEL+TSS+RPVPLTW+FSTKT+LLPLLDEKG MNRKLSLNYLQL+ S
Sbjct: 319 ELAGWIGQIHGKTELVTSSKRPVPLTWHFSTKTSLLPLLDEKGARMNRKLSLNYLQLNAS 378
Query: 379 EVKPYKDGGSRRRN-SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437
K KD GSRRR R+ +++ +NI + Q LSKN IN+IRRS VPQVIDTLW L+
Sbjct: 379 GDKFSKDDGSRRRTPKRRGNEISYDNIGSMSRQATLSKNDINSIRRSNVPQVIDTLWQLK 438
Query: 438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG 497
S+DMLPA+WFIF+R+GCDAAVQY++ NLLD+CE SEVELAL++FRI +PDAVRE AIKG
Sbjct: 439 SKDMLPAVWFIFSRKGCDAAVQYIDSSNLLDDCERSEVELALRKFRIQFPDAVRESAIKG 498
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
LL+GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV++SLSKR+ +
Sbjct: 499 LLQGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVIASLSKRSNN 558
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
GR L+ NEL QMAGRAGRRGID +GHVVL+QTPYEGAEECCKLLFAG+EPLVSQFTASY
Sbjct: 559 GRTHLSPNELLQMAGRAGRRGIDKKGHVVLLQTPYEGAEECCKLLFAGIEPLVSQFTASY 618
Query: 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCK 677
GMVLNLLAGAKV H S E D+ KA QA R+LEEARKLVEQSFGNYVGSNVMLAAK+EL K
Sbjct: 619 GMVLNLLAGAKVTHTS-EMDETKAFQAWRTLEEARKLVEQSFGNYVGSNVMLAAKEELVK 677
Query: 678 IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFS 737
I+KE ++L EI+D+AIDRKSR+ LS+ AY E+A LQEEL+ EKR RTELR+ ME +R
Sbjct: 678 IEKEIEMLNLEITDEAIDRKSRKFLSDMAYNEIAELQEELRLEKRHRTELRKEMESQRIC 737
Query: 738 ALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALN 797
AL +L++ +GHLPFLCLQYKDSEGV+HS+P V LG ++DSSKL NM + S +
Sbjct: 738 ALNSLLRNLGDGHLPFLCLQYKDSEGVQHSIPTVLLG---NMDSSKLGNMFPADSSLSG- 793
Query: 798 RLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRET 857
A+SN + SYYVALGSDN+WY FTEKWIKTVY+ GFPNVAL++GDALPRE
Sbjct: 794 --AESNLGITLEPGAESSYYVALGSDNSWYLFTEKWIKTVYKTGFPNVALSKGDALPREI 851
Query: 858 MSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHD 917
M LLDK M WEKLADSE G L CMEGSLETWSWSLNVPVL+SLSE+DE+L MS Y +
Sbjct: 852 MRSLLDKEGMKWEKLADSELGSLACMEGSLETWSWSLNVPVLNSLSENDELLQMSQSYME 911
Query: 918 AVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIE 977
+++ YK QR KVARLKK+I++TEGF+EYKKI+D E+KI++LK R KRL+ RI+QIE
Sbjct: 912 SLDRYKVQRNKVARLKKRISKTEGFREYKKILDMANLIEDKIRQLKTRYKRLSNRIQQIE 971
Query: 978 PSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPA 1037
PSGWKEFL+ISNVIHE RALDINT V+FPLGETAAAIRGENELW+AMVLRNK L+ LKP
Sbjct: 972 PSGWKEFLQISNVIHEIRALDINTHVMFPLGETAAAIRGENELWIAMVLRNKFLVQLKPT 1031
Query: 1038 QLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCC 1097
+LAAVCASLVSEGIKVR +NNS I+EPS TVIN+IN L+E R+S +LQEKHGV I CC
Sbjct: 1032 ELAAVCASLVSEGIKVRPGRNNSYIFEPSRTVINMINFLEEQRNSLEDLQEKHGVNISCC 1091
Query: 1098 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNA 1157
LDSQFSGMVEAWASGLTWRE+MMDCA+D+GDLARLLRRTIDLLAQIPKLPD+D LQ+NA
Sbjct: 1092 LDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDLLAQIPKLPDIDPSLQRNA 1151
Query: 1158 VDASNVMDRPPISELAG 1174
AS+VM+RPPISELAG
Sbjct: 1152 STASDVMNRPPISELAG 1168
>gi|449452156|ref|XP_004143826.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
ISE2, chloroplastic-like [Cucumis sativus]
Length = 1193
Score = 1628 bits (4216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 830/1182 (70%), Positives = 966/1182 (81%), Gaps = 41/1182 (3%)
Query: 22 FSFHQFHTLSHTLG-FCIPKPL--LSSNSIQFQASYKSPKSFFPTEHKLTDADEAADEYD 78
+ F F T ++ FC KPL S+ + F+ S+ SP+S F + +L+D DE DE +
Sbjct: 24 YPFPSFLTPHYSASRFCPHKPLAFYSTRPVPFRPSFHSPRSIFSEKSQLSDVDEDEDEDE 83
Query: 79 DDIDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAPSWREEFKWQRVEKLCNE 138
D+ D+DD + D + G +QS DE E+S D+S + +EFKWQRVEKL E
Sbjct: 84 DEDDEDDVAAEEYDSDALGG-----FEQSYDEVELSMDTSEISNASQEFKWQRVEKLLGE 138
Query: 139 VKEFGNEMIDVDELASIYDFRIDKFQ-------------------------RSSIEAFLR 173
V+EFG +IDVDELAS+Y+FRIDKFQ R +++AFLR
Sbjct: 139 VREFGEGIIDVDELASVYNFRIDKFQNVMTYPINSPELYQLYSCNFIILCXRLAVQAFLR 198
Query: 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGL 233
GSSVVVSAPTSSGKTLIAEAAAVATVA +RR+FYTTPLKALSNQKFREFRETFGD+NVGL
Sbjct: 199 GSSVVVSAPTSSGKTLIAEAAAVATVARKRRLFYTTPLKALSNQKFREFRETFGDSNVGL 258
Query: 234 LTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTV 293
LTGDSA+N++A +LIMTTEILRNMLYQSVGM +S SGLF VDVIVLDEVHYLSDISRGTV
Sbjct: 259 LTGDSAVNKDAPVLIMTTEILRNMLYQSVGMATSASGLFHVDVIVLDEVHYLSDISRGTV 318
Query: 294 WEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTAL 353
WEEI+IYCPKEVQ+ICLSATVAN DELAGWIGQIHGKTEL+TSS+RPVPLTW+FSTKT+L
Sbjct: 319 WEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPLTWHFSTKTSL 378
Query: 354 LPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN-SRKHADMNSNNIVTSFGQHQ 412
LPLLDEKG MNRKLSLNYLQL+ S K KD GSRRR R+ +++ +NI + Q
Sbjct: 379 LPLLDEKGARMNRKLSLNYLQLNASGDKFSKDDGSRRRTPKRRGNEISYDNIGSMSRQAT 438
Query: 413 LSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEM 472
LSKN IN+IRRS VPQVIDTLW L+S+DMLPA+WFIF+R+GCDAAVQY++ NLLD+CE
Sbjct: 439 LSKNDINSIRRSNVPQVIDTLWQLKSKDMLPAVWFIFSRKGCDAAVQYIDSSNLLDDCER 498
Query: 473 SEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 532
SEVELAL++FRI +PDAVRE AIKGLL+GVAAHHAGCLP+WKSFIEELFQRGLVKVVFAT
Sbjct: 499 SEVELALRKFRIQFPDAVRESAIKGLLQGVAAHHAGCLPLWKSFIEELFQRGLVKVVFAT 558
Query: 533 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592
ETLAAGINMPARTAV++SLSKR+ +GR L+ NEL QMAGRAGRRGID +GHVVL+QTPY
Sbjct: 559 ETLAAGINMPARTAVIASLSKRSNNGRTHLSPNELLQMAGRAGRRGIDKKGHVVLLQTPY 618
Query: 593 EGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEAR 652
EGAEECCKLLFAG+EPLVSQFTASYGMVLNLLAGAKV H S E D+ KA QA R+LEEAR
Sbjct: 619 EGAEECCKLLFAGIEPLVSQFTASYGMVLNLLAGAKVTHTS-EMDETKAFQAWRTLEEAR 677
Query: 653 KLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMAN 712
KLVEQSFGNYVGSNVMLAAK+EL KI+KE ++L EI+D+AIDRKSR+ LS+ AY E+A
Sbjct: 678 KLVEQSFGNYVGSNVMLAAKEELVKIEKEIEMLNLEITDEAIDRKSRKFLSDMAYNEIAE 737
Query: 713 LQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVY 772
LQEEL+ EKR RTELR+ ME +R AL +L++ +GHLPFLCLQYKDSEGV+HS+P V
Sbjct: 738 LQEELRLEKRHRTELRKEMESQRICALNSLLRNLGDGHLPFLCLQYKDSEGVQHSIPTVL 797
Query: 773 LGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEK 832
LG ++DSSKL NM + S + A+SN + SYYVALGSDN+WY FTEK
Sbjct: 798 LG---NMDSSKLGNMFPADSSLSG---AESNLGITLEPGAESSYYVALGSDNSWYLFTEK 851
Query: 833 WIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSW 892
WIKTVY+ GFPNVAL++GDALPRE M LLDK M WEKLADSE G L CMEGSLETWSW
Sbjct: 852 WIKTVYKTGFPNVALSKGDALPREIMRSLLDKEGMKWEKLADSELGSLACMEGSLETWSW 911
Query: 893 SLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTV 952
SLNVPVL+SLSE+DE+L MS Y ++++ YK QR KVARLKK+I++TEGF+EYKKI+D
Sbjct: 912 SLNVPVLNSLSENDELLQMSQSYMESLDRYKVQRNKVARLKKRISKTEGFREYKKILDMA 971
Query: 953 KFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAA 1012
E+KI++LK R KRL+ RI+QIEPSGWKEFL+ISNVIHE RALDINT V+FPLGETAA
Sbjct: 972 NLIEDKIRQLKTRYKRLSNRIQQIEPSGWKEFLQISNVIHEIRALDINTHVMFPLGETAA 1031
Query: 1013 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 1072
AIRGENELW+AMVLRNK L+ LKP +LAAVCASLVSEGIKVR +NNS I+EPS TVIN+
Sbjct: 1032 AIRGENELWIAMVLRNKFLVQLKPTELAAVCASLVSEGIKVRPGRNNSYIFEPSRTVINM 1091
Query: 1073 INVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARL 1132
IN L+E R+S +LQEKHGV I CCLDSQFSGMVEAWASGLTWRE+MMDCA+D+GDLARL
Sbjct: 1092 INFLEEQRNSLEDLQEKHGVNISCCLDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARL 1151
Query: 1133 LRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG 1174
LRRTIDLLAQIPKLPD+D LQ+NA AS+VM+RPPISELAG
Sbjct: 1152 LRRTIDLLAQIPKLPDIDPSLQRNASTASDVMNRPPISELAG 1193
>gi|357486299|ref|XP_003613437.1| ATP-dependent RNA helicase DOB1 [Medicago truncatula]
gi|355514772|gb|AES96395.1| ATP-dependent RNA helicase DOB1 [Medicago truncatula]
Length = 1201
Score = 1618 bits (4190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 803/1083 (74%), Positives = 904/1083 (83%), Gaps = 41/1083 (3%)
Query: 127 FKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQ---------------------- 164
FKWQRVEKLCNEV+EFG +IDVDELAS+YDFRIDKFQ
Sbjct: 113 FKWQRVEKLCNEVREFGVGIIDVDELASVYDFRIDKFQHIGFGSLMQRVQKVMHSNVVSP 172
Query: 165 ------------RSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
R +I+AFLRGSSVVVSAPTSSGKTLIAEAAAVATVA RR+FYTTPLK
Sbjct: 173 RFMGVVFKMIDFRQAIQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRLFYTTPLK 232
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFREFRETFGD+NVGLLTGDSA+N++AQ+LIMTTEILRNMLYQSVG VSS SGL
Sbjct: 233 ALSNQKFREFRETFGDSNVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSGSGLV 292
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 332
+VDVIVLDEVHYLSDISRGTVWEEI+IYCPK VQ+ICLSATVAN DELAGWIGQIHG TE
Sbjct: 293 NVDVIVLDEVHYLSDISRGTVWEEIVIYCPKAVQLICLSATVANPDELAGWIGQIHGGTE 352
Query: 333 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
L+TSS+RPVPL W+FS K +LLPLLD+KG MNRKLSLNYL+L +E KPYKD R+RN
Sbjct: 353 LVTSSKRPVPLNWHFSLKNSLLPLLDDKGTQMNRKLSLNYLKLQAAEAKPYKDDWPRKRN 412
Query: 393 SRKHADMNSNNIVTS-FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
SRK S +I Q LSKN INAIRRSQVPQ+IDTLWHL+SRDMLPA+WFIF+R
Sbjct: 413 SRKRGTRTSYDIDDRMLEQRSLSKNDINAIRRSQVPQIIDTLWHLQSRDMLPAVWFIFSR 472
Query: 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLP 511
+GCDAAVQY+EDC LLDECE SEV LALKRFRI YPDAVRE A+KGLL+GVAAHHAGCLP
Sbjct: 473 KGCDAAVQYVEDCKLLDECEASEVLLALKRFRIQYPDAVRETAVKGLLQGVAAHHAGCLP 532
Query: 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMA 571
+WK+FIEELFQRGLVKVVFATETLAAGINMPARTAV+SSLSKR+ +GR LTSNEL QMA
Sbjct: 533 LWKAFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRSDTGRTLLTSNELLQMA 592
Query: 572 GRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMH 631
GRAGRRGID GHVVLVQTP EGAEECCK+LF+G+EPLVSQFTASYGMVLNLL G K +
Sbjct: 593 GRAGRRGIDESGHVVLVQTPNEGAEECCKVLFSGLEPLVSQFTASYGMVLNLLGGGKALR 652
Query: 632 LSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISD 691
SN SD+MK +G++L+EARKL+EQSFGNYV S+VMLAAK+EL +I+KE +L SEI+D
Sbjct: 653 RSNTSDEMKT-SSGKTLDEARKLIEQSFGNYVSSSVMLAAKEELNRIEKEIQLLMSEITD 711
Query: 692 DAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHL 751
+AIDRKSR+ LS+ YKE+A LQE L+AEKR R ELRR+ E KR SALK +L++ EN L
Sbjct: 712 EAIDRKSRKALSQRQYKEIAELQENLRAEKRIRAELRRQKETKRISALKPLLEESEN--L 769
Query: 752 PFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQD 811
PFLCLQY+DS+GV+HS+PAV+LGK DSL + KLKNM DSFALN ++ D +D
Sbjct: 770 PFLCLQYRDSDGVQHSIPAVFLGKVDSLGALKLKNMIGSVDSFALN---SADADSELNED 826
Query: 812 VKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEK 871
PSY+VALGSDN+WY FTEKWIKTVY GFP+V L QGD PRE MS LLDK +M W+
Sbjct: 827 PVPSYHVALGSDNSWYLFTEKWIKTVYETGFPDVPLVQGDTRPREIMSDLLDKEDMKWDN 886
Query: 872 LADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVAR 931
LA+SE GGLW EGSLETWSWSLNVP LSS SE++EVL S Y DA E YK+QR+KVAR
Sbjct: 887 LANSEHGGLWVTEGSLETWSWSLNVPGLSSFSENEEVLLKSQAYRDAAEQYKDQRSKVAR 946
Query: 932 LKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVI 991
LKKKI+RTEG KEY KI+D VKF EEKIKR+K RSKRLT RIEQIEPSGWKEF+++SNVI
Sbjct: 947 LKKKISRTEGHKEYNKILDAVKFIEEKIKRMKTRSKRLTNRIEQIEPSGWKEFMQVSNVI 1006
Query: 992 HETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGI 1051
ETRALDINT VI+PLGETA+AIRGENELWLAMVLR+KIL +LKPAQLAAVCA LVSEGI
Sbjct: 1007 RETRALDINTHVIYPLGETASAIRGENELWLAMVLRSKILAELKPAQLAAVCAGLVSEGI 1066
Query: 1052 KVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWAS 1111
KVR WKNN+ IYEPS TV+N+I +LDE R++ L +QEKHGV I CCLDSQF GMVEAWAS
Sbjct: 1067 KVRPWKNNNYIYEPSATVVNIIGLLDEQRNALLTIQEKHGVTISCCLDSQFCGMVEAWAS 1126
Query: 1112 GLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 1171
GLTWRE+MMDCA+DDGDLARLLRRTIDLLAQIP LPD+D LQKNA A +VMDRPPISE
Sbjct: 1127 GLTWREIMMDCAMDDGDLARLLRRTIDLLAQIPNLPDIDPLLQKNARAACDVMDRPPISE 1186
Query: 1172 LAG 1174
LAG
Sbjct: 1187 LAG 1189
>gi|297841743|ref|XP_002888753.1| PDE317 [Arabidopsis lyrata subsp. lyrata]
gi|297334594|gb|EFH65012.1| PDE317 [Arabidopsis lyrata subsp. lyrata]
Length = 1178
Score = 1600 bits (4143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 813/1177 (69%), Positives = 969/1177 (82%), Gaps = 15/1177 (1%)
Query: 12 TFPVFANTKPFSFHQFH-------TLSHTLGFCIPKPL-LSSNSIQFQASYKSPKSFFPT 63
T PV + T SF +F +LSH+ FC K L L+ N + F++S S
Sbjct: 3 TLPVVSLTPCSSFFKFFHFPSLHLSLSHSPNFCFTKSLILNPNQLSFKSSLNSLSPSQSQ 62
Query: 64 EHKLTDADEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSDD----EFEVSSDSSP 119
+ + D+ +E +++ ++D+D++ + D+ +SDEI SDD EF V +
Sbjct: 63 LSEEYEEDDDDEEEEEEEEEDEDDDDDEAADEYEN-ISDEIGNSDDDEETEFSVDLPTEE 121
Query: 120 APSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVV 179
+ R EF+WQRVEKL + V++FG EMID+DEL SIYDFRIDKFQR +IEAFLRGSSVVV
Sbjct: 122 SARERVEFRWQRVEKLRSLVRDFGVEMIDIDELISIYDFRIDKFQRLAIEAFLRGSSVVV 181
Query: 180 SAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSA 239
SAPTSSGKTLIAEAAAVATVA RR+FYTTPLKALSNQKFREFRETFGD+NVGLLTGDSA
Sbjct: 182 SAPTSSGKTLIAEAAAVATVAKGRRLFYTTPLKALSNQKFREFRETFGDDNVGLLTGDSA 241
Query: 240 INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIII 299
IN++AQI+IMTTEILRNMLYQSVGM SS +GLF VD IVLDEVHYLSDISRGTVWEE +I
Sbjct: 242 INKDAQIVIMTTEILRNMLYQSVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEETVI 301
Query: 300 YCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDE 359
YCPKEVQ+ICLSATVAN DELAGWIG+IHGKTEL+TS+RRPVPLTW+FSTK +LLPLLDE
Sbjct: 302 YCPKEVQLICLSATVANPDELAGWIGEIHGKTELVTSTRRPVPLTWFFSTKHSLLPLLDE 361
Query: 360 KGKHMNRKLSLNYLQLSTSEVKPYKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSI 418
KG ++NRKLSLNYLQLS SE + D G R+R S+K S N + + + LSKN I
Sbjct: 362 KGTNVNRKLSLNYLQLSASEARFRDDDDGYRKRRSKKRVGDTSYNSLVNITDYPLSKNEI 421
Query: 419 NAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELA 478
N IRRSQVPQ+ DTLWHL+ +DMLPAIWFIFNRRGCDAAVQY+E+ LLD+CE SEVELA
Sbjct: 422 NKIRRSQVPQISDTLWHLQGKDMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELA 481
Query: 479 LKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 538
LK+FR+LYPDAVRE A KGLL+G+AAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAG
Sbjct: 482 LKKFRVLYPDAVRESAEKGLLRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAG 541
Query: 539 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 598
INMPARTAV+SSL+K+ + RIQL NELFQMAGRAGRRGID +G+ VLVQT +EGAEEC
Sbjct: 542 INMPARTAVISSLTKKAGNERIQLGPNELFQMAGRAGRRGIDEKGYTVLVQTAFEGAEEC 601
Query: 599 CKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQS 658
CKL+FAGV+PLVSQFTASYGMVLNL+AG+KV S+ ++ K LQAGRSLEEA+KLVE+S
Sbjct: 602 CKLVFAGVKPLVSQFTASYGMVLNLVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKLVEKS 661
Query: 659 FGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELK 718
FGNYV SNV +AAK+EL +I K+ ++L+SEISD+AID+KSR+LLS YKE+ L+EEL+
Sbjct: 662 FGNYVSSNVTVAAKEELAEIDKKIEILSSEISDEAIDKKSRKLLSARDYKEITELKEELR 721
Query: 719 AEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDS 778
EKR R E+RRRMEL RFSALK +LK E G+LPF+CL++KDSE + SVPA+YLG DS
Sbjct: 722 EEKRKRAEVRRRMELARFSALKPLLKGMEEGNLPFICLEFKDSEERQQSVPAIYLGHIDS 781
Query: 779 LDSSKLKNMASINDSFALNRLA-QSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTV 837
SKL+ M S+++SFALN + + D+ +VKPSYYVALGSDN+WY FTEKW++TV
Sbjct: 782 FQGSKLQKMMSLDESFALNVIEDEPAADEPGKPNVKPSYYVALGSDNSWYLFTEKWVRTV 841
Query: 838 YRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVP 897
YR GFPN++LA GDALPRE M LLDK +M W+KLA+SE G LW +EGSLETWSWSLNVP
Sbjct: 842 YRTGFPNISLALGDALPREIMKTLLDKADMQWDKLAESELGSLWRLEGSLETWSWSLNVP 901
Query: 898 VLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEE 957
VLSSLS+ DEVLHMS EY +A E YKEQR KV RLKKK++R+ GF+EYKKI++ T E
Sbjct: 902 VLSSLSDEDEVLHMSEEYDNATEQYKEQRRKVFRLKKKMSRSAGFREYKKILENANLTVE 961
Query: 958 KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGE 1017
K+KRLKARS+RL R+EQIEPSGWK+F+RISNVIHE+RALDINT +IFPLGETAAAIRGE
Sbjct: 962 KMKRLKARSRRLINRLEQIEPSGWKDFMRISNVIHESRALDINTHLIFPLGETAAAIRGE 1021
Query: 1018 NELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLD 1077
NELWLAMVLRNK L+DLKP +LA VCASLVSEGIKVR W++N+ IYEPS TV++++N L+
Sbjct: 1022 NELWLAMVLRNKALVDLKPPELAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFLE 1081
Query: 1078 EHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTI 1137
+ R S ++LQEKH V IPCCLD QFSGMVEAWASGL+W+EMMM+CA+D+GDLARLLRRTI
Sbjct: 1082 DQRISLIKLQEKHEVMIPCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTI 1141
Query: 1138 DLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG 1174
DLLAQIPKLPD+D LQ++A A+++MDRPPISELAG
Sbjct: 1142 DLLAQIPKLPDIDPVLQRSAAAAADIMDRPPISELAG 1178
>gi|2194131|gb|AAB61106.1| Similar to Synechocystis antiviral protein (gb|D90917) [Arabidopsis
thaliana]
Length = 1198
Score = 1533 bits (3970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 787/1211 (64%), Positives = 954/1211 (78%), Gaps = 61/1211 (5%)
Query: 11 TTFPVFANTKPFSFHQFH------TLSHTLGFCIPKPL-LSSNSIQFQASYKSPKSFFPT 63
T PV + T SF FH +LSH+ F K L L+ N + F+++ S P+
Sbjct: 2 NTLPVVSLTASSSFKFFHFPSLHRSLSHSPNFSFTKSLILNPNHLSFKSTLNS---LSPS 58
Query: 64 EHKLTDADEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSD-----DEFEVSSDSS 118
+ +L + ++ +E ++D E+ DE D +SDEI+ SD +E E S D
Sbjct: 59 QSQLYEEEDDEEEEEED------EDDDDEAADEYDNISDEIRNSDDDDDDEETEFSVDL- 111
Query: 119 PAPSWRE--EFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSS 176
P S RE EF+WQRVEKL + V++FG EMID+DEL SIYDFRIDKFQR +IEAFLRGSS
Sbjct: 112 PTESARERVEFRWQRVEKLRSLVRDFGVEMIDIDELISIYDFRIDKFQRLAIEAFLRGSS 171
Query: 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236
VVVSAPTSSGKTLIAEAAAV+TVA RR+FYTTPLKALSNQKFREFRETFGD+NVGLLTG
Sbjct: 172 VVVSAPTSSGKTLIAEAAAVSTVAKGRRLFYTTPLKALSNQKFREFRETFGDDNVGLLTG 231
Query: 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV-DVIVLDEVHYLSDISRGTVWE 295
DSAIN++AQI+IMTTEILRNMLYQ ++S +F + +VL+ + D GTVWE
Sbjct: 232 DSAINKDAQIVIMTTEILRNMLYQRSFFLTS---IFVLKSFLVLEWLLQELDFFMGTVWE 288
Query: 296 EII-------------IYCPKEVQIICLSA--TVANADELAGWIGQ-------------- 326
EI+ +Y +++ + +VAN DELAGWIG+
Sbjct: 289 EIVSFFSHCFSSFLQRLYLLSVSKLVSVFQIRSVANPDELAGWIGEQLIYCFADEVSQFL 348
Query: 327 IHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD- 385
IHGKTEL+TS+RRPVPLTWYFSTK +LLPLLDEKG ++NRKLSLNYLQLS SE + D
Sbjct: 349 IHGKTELVTSTRRPVPLTWYFSTKHSLLPLLDEKGINVNRKLSLNYLQLSASEARFRDDD 408
Query: 386 -GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
G +RR+ ++ D + NN+V + + LSKN IN IRRSQVPQ+ DTLWHL+ ++MLPA
Sbjct: 409 DGYRKRRSKKRGGDTSYNNLV-NVTDYPLSKNEINKIRRSQVPQISDTLWHLQGKNMLPA 467
Query: 445 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 504
IWFIFNRRGCDAAVQY+E+ LLD+CE SEVELALK+FR+LYPDAVRE A KGLL+G+AA
Sbjct: 468 IWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELALKKFRVLYPDAVRESAEKGLLRGIAA 527
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV+SSLSK+ + RI+L
Sbjct: 528 HHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKAGNERIELGP 587
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
NEL+QMAGRAGRRGID +G+ VLVQT +EGAEECCKL+FAGV+PLVSQFTASYGMVLNL+
Sbjct: 588 NELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKPLVSQFTASYGMVLNLV 647
Query: 625 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDV 684
AG+KV S+ ++ K LQAGRSLEEA+KLVE+SFGNYV SNV +AAK EL +I + ++
Sbjct: 648 AGSKVTRKSSGTEAGKVLQAGRSLEEAKKLVEKSFGNYVSSNVTVAAKQELAEIDNKIEI 707
Query: 685 LTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILK 744
L+SEISD+AID+KSR+LLS YKE+ L+EEL+ EKR R E RRRMEL+RF ALK +LK
Sbjct: 708 LSSEISDEAIDKKSRKLLSARDYKEITVLKEELREEKRKRAEQRRRMELERFLALKPLLK 767
Query: 745 DFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLA-QSN 803
E G+LPF+CL++KDSEG E SVPAVYLG DS SKL+ M S+++SFALN + +
Sbjct: 768 GMEEGNLPFICLEFKDSEGREQSVPAVYLGHIDSFQGSKLQKMMSLDESFALNLIEDELA 827
Query: 804 GDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLD 863
D+ +VKPSYYVALGSDN+WY FTEKW++TVYR GFPN+ALA GDALPRE M LLD
Sbjct: 828 ADEPGKPNVKPSYYVALGSDNSWYLFTEKWVRTVYRTGFPNIALALGDALPREIMKNLLD 887
Query: 864 KGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYK 923
K +M W+KLA+SE G LW +EGSLETWSWSLNVPVLSSLS+ DEVLHMS EY +A + YK
Sbjct: 888 KADMQWDKLAESELGSLWRLEGSLETWSWSLNVPVLSSLSDEDEVLHMSEEYDNAAQKYK 947
Query: 924 EQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKE 983
EQR+K++RLKKK++R+EGF+EYKKI++ T EK+KRLKARS+RL R+EQIEPSGWK+
Sbjct: 948 EQRSKISRLKKKMSRSEGFREYKKILENANLTVEKMKRLKARSRRLINRLEQIEPSGWKD 1007
Query: 984 FLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVC 1043
F+RISNVIHE+RALDINT +IFPLGETAAAIRGENELWLAMVLRNK L+DLKP QLA VC
Sbjct: 1008 FMRISNVIHESRALDINTHLIFPLGETAAAIRGENELWLAMVLRNKALVDLKPPQLAGVC 1067
Query: 1044 ASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFS 1103
ASLVSEGIKVR W++N+ IYEPS TV++++N L++ RSS ++LQEKH V IPCCLD QFS
Sbjct: 1068 ASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFLEDQRSSLIKLQEKHEVMIPCCLDVQFS 1127
Query: 1104 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNV 1163
GMVEAWASGL+W+EMMM+CA+D+GDLARLLRRTIDLLAQIPKLPD+D LQ++A A+++
Sbjct: 1128 GMVEAWASGLSWKEMMMECAMDEGDLARLLRRTIDLLAQIPKLPDIDPVLQRSAAAAADI 1187
Query: 1164 MDRPPISELAG 1174
MDRPPISELAG
Sbjct: 1188 MDRPPISELAG 1198
>gi|357138189|ref|XP_003570680.1| PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2,
chloroplastic-like [Brachypodium distachyon]
Length = 1168
Score = 1481 bits (3833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 729/1051 (69%), Positives = 868/1051 (82%), Gaps = 6/1051 (0%)
Query: 125 EEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTS 184
EE+K Q+V KL EV+EFG ++ID +ELA IYDF IDKFQR +I+AFLRGSSVVVSAPTS
Sbjct: 123 EEYKSQQVAKLVAEVREFGEDIIDYNELAGIYDFPIDKFQRLAIQAFLRGSSVVVSAPTS 182
Query: 185 SGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREA 244
SGKTLIAEAAAVATVA RR+FYTTPLKALSNQKFR+FR TFGD+NVGLLTGDSAIN++A
Sbjct: 183 SGKTLIAEAAAVATVARGRRLFYTTPLKALSNQKFRDFRNTFGDHNVGLLTGDSAINKDA 242
Query: 245 QILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKE 304
QILIMTTEILRNMLYQSVGM +S+ LF+VDVIVLDEVHYLSDISRGTVWEE +IYCPKE
Sbjct: 243 QILIMTTEILRNMLYQSVGMTASQGRLFEVDVIVLDEVHYLSDISRGTVWEETVIYCPKE 302
Query: 305 VQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM 364
VQ+ICLSATVAN DELAGWIGQIHGKTEL+TS+RRPVPLTW+FS K ALLPLLD KGK M
Sbjct: 303 VQLICLSATVANPDELAGWIGQIHGKTELVTSNRRPVPLTWHFSKKFALLPLLDGKGKKM 362
Query: 365 NRKLSLNYLQ-LSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 423
NRKL +++ Q +S+ + + Y G R+ + K+ + + + Q QLSK+ + +RR
Sbjct: 363 NRKLRMSHSQNISSPKSEFYYVKGKRKLRTNKNEQQGNRSPLDISKQVQLSKHEVTNMRR 422
Query: 424 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFR 483
SQVP + DTL L DMLPAIWFIF+RRGCDAAV+YLEDC LL +CE SEVEL L+RFR
Sbjct: 423 SQVPLIRDTLSQLWENDMLPAIWFIFSRRGCDAAVEYLEDCRLLHDCEASEVELELRRFR 482
Query: 484 ILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 543
+ YPDA+RE A+KGL++GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPA
Sbjct: 483 MQYPDAIRENAVKGLMRGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPA 542
Query: 544 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 603
RTAV+SSLSKR +GR LT N LFQMAGRAGRRGID GH VLVQTP EG EECC ++F
Sbjct: 543 RTAVISSLSKRIDAGRQLLTPNNLFQMAGRAGRRGIDTVGHSVLVQTPNEGPEECCDVIF 602
Query: 604 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 663
AG+EPLVSQFTASYGMVLNLLAG+KV H ES D+KA ++GR+LEEARKLVEQSFGNYV
Sbjct: 603 AGLEPLVSQFTASYGMVLNLLAGSKVTHNQKESGDVKAKRSGRTLEEARKLVEQSFGNYV 662
Query: 664 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRF 723
GSNVM+AAK+EL + QKE L+SEI+D+ IDR+ R LSE Y E++ LQ++ K EK+
Sbjct: 663 GSNVMVAAKEELERTQKEIQYLSSEITDEFIDRRCREELSEEDYAEISLLQKKFKEEKQI 722
Query: 724 RTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSK 783
R EL++RMEL+R +A K L++FE+GHLPF+CLQYKD + V H++PAV++G S D K
Sbjct: 723 RNELKKRMELERMAAWKTRLEEFESGHLPFMCLQYKDKDSVHHTIPAVFIGSLSSFDDQK 782
Query: 784 LKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFP 843
+++M + + S G+ Y PSYYVAL SDN+WY FTEKWIKTVYR G P
Sbjct: 783 IESMLEDDSISPGKQEVDSGGELY-----YPSYYVALSSDNSWYLFTEKWIKTVYRTGLP 837
Query: 844 NVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLS 903
+ +G LPRET+ LL + +M+W+++A SE+G L CM+GSL+TWSWSLNVPVL+SLS
Sbjct: 838 ALPSVEGGTLPRETLKQLLLREDMMWDQVAKSEYGSLSCMDGSLDTWSWSLNVPVLNSLS 897
Query: 904 ESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLK 963
E +EV S E+ AVE +K+QR KV++LKK I T+GF+E++KI+D FT+EKI+RL+
Sbjct: 898 EDNEVERFSQEHQTAVECHKQQRRKVSQLKKTIRSTKGFREFQKIIDRRNFTKEKIERLE 957
Query: 964 ARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLA 1023
ARS+RLT+RI QIEP+GWKEFL+IS VI E R LDINTQVI+PLGETAAAIRGENELWLA
Sbjct: 958 ARSRRLTRRIMQIEPTGWKEFLQISKVIQEARVLDINTQVIYPLGETAAAIRGENELWLA 1017
Query: 1024 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSF 1083
MVLRNK+LLDLKP+QLAAVC SLVSEGIK+R WKN+S +YEPS+ V VIN LDE R+S
Sbjct: 1018 MVLRNKVLLDLKPSQLAAVCGSLVSEGIKLRPWKNSSYVYEPSSVVTGVINYLDEQRNSL 1077
Query: 1084 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 1143
+ELQEKHGV+IPC +D+QF+GMVEAWASGLTWRE+MMD A+DDGDLARLLRRT+DLLAQI
Sbjct: 1078 IELQEKHGVKIPCEIDTQFAGMVEAWASGLTWREIMMDSAMDDGDLARLLRRTMDLLAQI 1137
Query: 1144 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 1174
PKLPD+D LQKNA A NVMDR P+SELAG
Sbjct: 1138 PKLPDIDPVLQKNAQIACNVMDRVPLSELAG 1168
>gi|115448571|ref|NP_001048065.1| Os02g0739000 [Oryza sativa Japonica Group]
gi|46390556|dbj|BAD16042.1| putative helicase [Oryza sativa Japonica Group]
gi|113537596|dbj|BAF09979.1| Os02g0739000 [Oryza sativa Japonica Group]
gi|215704690|dbj|BAG94318.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 1179
Score = 1473 bits (3813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 739/1051 (70%), Positives = 871/1051 (82%), Gaps = 7/1051 (0%)
Query: 125 EEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTS 184
EE+K QRV KL EV+EFG ++ID +ELA IYDF IDKFQR +I+AFLRGSSVVVSAPTS
Sbjct: 135 EEYKSQRVGKLVAEVREFGEDIIDYNELAGIYDFPIDKFQRLAIQAFLRGSSVVVSAPTS 194
Query: 185 SGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREA 244
SGKTLIAEAAAVATVA RR+FYTTPLKALSNQKFR+FR TFGD+NVGLLTGDSAIN++A
Sbjct: 195 SGKTLIAEAAAVATVARGRRLFYTTPLKALSNQKFRDFRNTFGDHNVGLLTGDSAINKDA 254
Query: 245 QILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKE 304
QILIMTTEILRNMLYQSVGM +SE LF VDVIVLDEVHYLSDISRGTVWEE +IYCPKE
Sbjct: 255 QILIMTTEILRNMLYQSVGMAASEGRLFQVDVIVLDEVHYLSDISRGTVWEETVIYCPKE 314
Query: 305 VQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM 364
VQ+ICLSATVAN DELAGWIGQIHGKTEL+TS +RPVPLTW+FS K AL+PLLD KGK M
Sbjct: 315 VQLICLSATVANPDELAGWIGQIHGKTELVTSHKRPVPLTWHFSKKFALVPLLDGKGKKM 374
Query: 365 NRKLSLNYLQ-LSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 423
NRKL +++ Q LS+ + + Y G R+ + K+ N + + S Q QLSK+ + +RR
Sbjct: 375 NRKLRMSHFQNLSSPKSEFYYVKGKRKLRTTKNEQGNRSPLDIS-KQVQLSKHELTNMRR 433
Query: 424 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFR 483
SQVP + DTL L DMLPAIWFIF+RRGCDAAV+YLEDC LL +CE SEVEL LKRFR
Sbjct: 434 SQVPLIRDTLSQLWENDMLPAIWFIFSRRGCDAAVEYLEDCRLLHDCEASEVELELKRFR 493
Query: 484 ILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 543
+ YPDA+RE A+KGLL+GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPA
Sbjct: 494 MQYPDAIRESAVKGLLRGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPA 553
Query: 544 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 603
RT+V+SSLSKR +GR LT NELFQMAGRAGRRGID GH VLVQT YEG EECC ++F
Sbjct: 554 RTSVISSLSKRIDAGRQLLTPNELFQMAGRAGRRGIDTVGHSVLVQTTYEGPEECCDVIF 613
Query: 604 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 663
AG+EPLVSQFTASYGMVLNLLAG+KV H ESDD+K ++GR+LEEARKLVEQSFGNYV
Sbjct: 614 AGLEPLVSQFTASYGMVLNLLAGSKVTHNQKESDDIKVKRSGRTLEEARKLVEQSFGNYV 673
Query: 664 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRF 723
GSNVM+AAK+EL +IQ E L+SEI+D++IDRK R LSE Y E++ LQ++LK EK+
Sbjct: 674 GSNVMVAAKEELERIQSEIQYLSSEITDESIDRKCREELSEEDYAEISLLQKKLKEEKQM 733
Query: 724 RTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSK 783
R EL++RMEL+R A K L++FE+GHLPF+CLQYKD + V+H++PAV++G S K
Sbjct: 734 RNELKKRMELERMVAWKTRLEEFESGHLPFMCLQYKDKDSVQHTIPAVFIGSLSSFADQK 793
Query: 784 LKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFP 843
+ ++ NDS +A D + Q PSYYVAL SDN+WY FTEKWIK VY+ G P
Sbjct: 794 IVSLVE-NDS----PVAGKQKVDNEGQQYYPSYYVALSSDNSWYLFTEKWIKAVYKTGLP 848
Query: 844 NVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLS 903
V A+G LPRET+ LL + +M+W+K+A SE+G L CM+GSL+TWSWSLNVPVL+SLS
Sbjct: 849 AVPSAEGGPLPRETLKQLLLREDMMWDKIAKSEYGSLLCMDGSLDTWSWSLNVPVLNSLS 908
Query: 904 ESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLK 963
E DEV S E+ DAVE +K+QR KV++LKK I T+GFKE++KI+D FT+EKI+RL+
Sbjct: 909 EDDEVERFSQEHQDAVECHKQQRKKVSQLKKTIRSTKGFKEFQKIIDMRNFTKEKIERLE 968
Query: 964 ARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLA 1023
ARS+RLT+RI QIEP+GWKEFL+IS VI E RALDINTQVI+PLGETAAAIRGENELWLA
Sbjct: 969 ARSRRLTRRIRQIEPTGWKEFLQISKVIQEARALDINTQVIYPLGETAAAIRGENELWLA 1028
Query: 1024 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSF 1083
MVLRNK+LLDLKP+QLAA+C SLVSEGIK+R WKN+S +YEPS+ V VIN L+E R+S
Sbjct: 1029 MVLRNKVLLDLKPSQLAAICGSLVSEGIKLRPWKNSSYVYEPSSVVTGVINYLEEQRNSL 1088
Query: 1084 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 1143
++LQEKH V+IPC +D+QF+GMVEAWASGLTWRE+MMD A+DDGDLARLLRRTIDLLAQI
Sbjct: 1089 VDLQEKHSVKIPCEIDAQFAGMVEAWASGLTWREIMMDSAMDDGDLARLLRRTIDLLAQI 1148
Query: 1144 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 1174
PKLPD+D LQKNA A N+MDR PISELAG
Sbjct: 1149 PKLPDIDPVLQKNAQIACNIMDRVPISELAG 1179
>gi|242066050|ref|XP_002454314.1| hypothetical protein SORBIDRAFT_04g028500 [Sorghum bicolor]
gi|241934145|gb|EES07290.1| hypothetical protein SORBIDRAFT_04g028500 [Sorghum bicolor]
Length = 1173
Score = 1468 bits (3801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 737/1052 (70%), Positives = 875/1052 (83%), Gaps = 8/1052 (0%)
Query: 125 EEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTS 184
EE+K +RV KL EV+EFG ++ID +ELA IYDF IDKFQR +I+AFLRGSSVVVSAPTS
Sbjct: 128 EEYKSRRVVKLVAEVREFGEDIIDYNELAGIYDFPIDKFQRLAIQAFLRGSSVVVSAPTS 187
Query: 185 SGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREA 244
SGKTLIAEAAAVATVA RR+FYTTPLKALSNQKFR+FR+TFGD+NVGLLTGDSAIN++A
Sbjct: 188 SGKTLIAEAAAVATVARGRRLFYTTPLKALSNQKFRDFRDTFGDHNVGLLTGDSAINKDA 247
Query: 245 QILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKE 304
QILIMTTEILRNMLYQSVGM +SE LF VDVIVLDEVHYLSDISRGTVWEE +IYCPKE
Sbjct: 248 QILIMTTEILRNMLYQSVGMTASEGRLFQVDVIVLDEVHYLSDISRGTVWEETVIYCPKE 307
Query: 305 VQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM 364
VQ+ICLSATVAN DELAGWI QIHGKTEL+TS++RPVPLTW+FS K +L PLLD KGK M
Sbjct: 308 VQLICLSATVANPDELAGWISQIHGKTELVTSNKRPVPLTWHFSKKYSLQPLLDGKGKKM 367
Query: 365 NRKLSL-NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 423
NRKL + N+ L++ + + Y G RR + K NS++ S Q QLSK+ ++ +RR
Sbjct: 368 NRKLRMSNFQNLASPKSEFYYVKGKRRFRTNKIEQGNSSSFDIS-KQVQLSKHELSNMRR 426
Query: 424 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFR 483
SQVP + DTL L DMLPAIWFIF+RRGCDAAV+YLEDC LL +CE SEVEL L+RF+
Sbjct: 427 SQVPLIRDTLSQLWENDMLPAIWFIFSRRGCDAAVEYLEDCRLLHDCEASEVELELRRFK 486
Query: 484 ILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 543
+ YPDAVRE A+KGLL+GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPA
Sbjct: 487 MQYPDAVRESAVKGLLRGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPA 546
Query: 544 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 603
RTAV+SSLSKR +GR LT NELFQMAGRAGRRGID GH VLVQTPYEG EECC ++F
Sbjct: 547 RTAVISSLSKRIDAGRQLLTPNELFQMAGRAGRRGIDTVGHTVLVQTPYEGPEECCDIIF 606
Query: 604 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDM-KALQAGRSLEEARKLVEQSFGNY 662
AG+EPLVSQFTASYGMVLNLLAG+KV H ESDD+ K ++GR+LEEARKLVEQSFGNY
Sbjct: 607 AGLEPLVSQFTASYGMVLNLLAGSKVTHNQKESDDVNKVKRSGRTLEEARKLVEQSFGNY 666
Query: 663 VGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
VGSNVM+AAK+E+ +IQ+E L+SEI+D++ DRK R LSE Y E++ LQ+ LK EK+
Sbjct: 667 VGSNVMVAAKEEIERIQQEIQYLSSEITDESTDRKCREELSEEDYAEISLLQKRLKEEKQ 726
Query: 723 FRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSS 782
R EL+++MEL+R +A K+ L++FENGHLPF+CLQYKD + ++H++PAV++G +S
Sbjct: 727 IRNELKKKMELERMAAWKNRLEEFENGHLPFMCLQYKDKDSIQHTIPAVFIGNLNSFADQ 786
Query: 783 KLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGF 842
K+ NM +DS + +G+ Q PSYYVAL SDN+WY FTEKWIKTVY+ G
Sbjct: 787 KITNMVE-DDSLVSGKQKLDSGE----QLYCPSYYVALSSDNSWYLFTEKWIKTVYKTGL 841
Query: 843 PNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSL 902
P VA +G ALPRET+ LL + E++W+K+A SE+G L M+GSL+TWSWSLNVPVL+SL
Sbjct: 842 PAVASIEGGALPRETLKQLLLREELMWDKVAKSEYGSLLSMDGSLDTWSWSLNVPVLNSL 901
Query: 903 SESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRL 962
SE DEV S E+ DAVE YK+QR KV+ LKK I T+GFKE++KI+D FT+EKI+RL
Sbjct: 902 SEDDEVERFSQEHRDAVECYKQQRRKVSHLKKTIRSTKGFKEFQKIIDIRNFTKEKIERL 961
Query: 963 KARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWL 1022
+ARS+RLT+RI QIEP+GWKEFL+IS VI E RALDINTQVI+PLGETAAAIRGENELWL
Sbjct: 962 EARSRRLTRRIRQIEPTGWKEFLQISKVIQEARALDINTQVIYPLGETAAAIRGENELWL 1021
Query: 1023 AMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSS 1082
AMVLRNK+LLDLKP+QLAAVC SLVSEGIK R WKN+S +YEPS+ VI VI+ L+E R+S
Sbjct: 1022 AMVLRNKVLLDLKPSQLAAVCGSLVSEGIKFRPWKNSSYVYEPSSVVIGVISYLEEQRNS 1081
Query: 1083 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 1142
++LQE+HGV+IPC +D+QF+GMVEAWASGLTWRE+MMD A+DDGDLARLLRR+IDLLAQ
Sbjct: 1082 LIDLQERHGVKIPCEIDAQFAGMVEAWASGLTWREIMMDSAMDDGDLARLLRRSIDLLAQ 1141
Query: 1143 IPKLPDVDQRLQKNAVDASNVMDRPPISELAG 1174
IPKLPD+D LQKNA A +VMDR PISELAG
Sbjct: 1142 IPKLPDIDPVLQKNAQIACSVMDRVPISELAG 1173
>gi|222623644|gb|EEE57776.1| hypothetical protein OsJ_08317 [Oryza sativa Japonica Group]
Length = 1140
Score = 1404 bits (3635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 716/1051 (68%), Positives = 840/1051 (79%), Gaps = 46/1051 (4%)
Query: 125 EEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTS 184
EE+K QRV KL EV+EFG ++ID +ELA IYDF IDKFQR +I+AFLRGSSVVVSAPTS
Sbjct: 135 EEYKSQRVGKLVAEVREFGEDIIDYNELAGIYDFPIDKFQRLAIQAFLRGSSVVVSAPTS 194
Query: 185 SGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREA 244
SGKTLIAEAAAVATVA RR+FYTTPLKALSNQKFR+FR TFGD+NVGLLTGDSAIN++A
Sbjct: 195 SGKTLIAEAAAVATVARGRRLFYTTPLKALSNQKFRDFRNTFGDHNVGLLTGDSAINKDA 254
Query: 245 QILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKE 304
QILIMTTEILRNMLYQSVGM +SE LF VDVIVLDEVHYLSDISRGTVWEE +IYCPKE
Sbjct: 255 QILIMTTEILRNMLYQSVGMAASEGRLFQVDVIVLDEVHYLSDISRGTVWEETVIYCPKE 314
Query: 305 VQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM 364
VQ+ICLSATVAN DELAGWIGQIHGKTEL+TS +RPVPLTW+FS K AL+PLLD KGK M
Sbjct: 315 VQLICLSATVANPDELAGWIGQIHGKTELVTSHKRPVPLTWHFSKKFALVPLLDGKGKKM 374
Query: 365 NRKLSLNYLQ-LSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 423
NRKL +++ Q LS+ + + Y G R+ + K+ N + + S Q QLSK+ + +RR
Sbjct: 375 NRKLRMSHFQNLSSPKSEFYYVKGKRKLRTTKNEQGNRSPLDIS-KQVQLSKHELTNMRR 433
Query: 424 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFR 483
SQVP + DTL L DMLPAIWFIF+RRGCDAAV+YLEDC LL +CE SEVEL LKRFR
Sbjct: 434 SQVPLIRDTLSQLWENDMLPAIWFIFSRRGCDAAVEYLEDCRLLHDCEASEVELELKRFR 493
Query: 484 ILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 543
+ YPDA+RE A+KGLL+GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPA
Sbjct: 494 MQYPDAIRESAVKGLLRGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPA 553
Query: 544 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 603
RT+V+SSLSKR +GR LT NELFQMAGRAGRRGID GH VLVQT YEG EECC ++F
Sbjct: 554 RTSVISSLSKRIDAGRQLLTPNELFQMAGRAGRRGIDTVGHSVLVQTTYEGPEECCDVIF 613
Query: 604 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 663
AG+EPLVSQFTASYGMVLNLLAG+KV H ESDD+K ++GR+LEEARKLVEQSFGNYV
Sbjct: 614 AGLEPLVSQFTASYGMVLNLLAGSKVTHNQKESDDIKVKRSGRTLEEARKLVEQSFGNYV 673
Query: 664 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRF 723
GSNVM+AAK+EL +IQ E L+SEI+D++IDRK R LSE Y E++ LQ++LK
Sbjct: 674 GSNVMVAAKEELERIQSEIQYLSSEITDESIDRKCREELSEEDYAEISLLQKKLK----- 728
Query: 724 RTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSK 783
YKD + V+H++PAV++G S K
Sbjct: 729 ----------------------------------YKDKDSVQHTIPAVFIGSLSSFADQK 754
Query: 784 LKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFP 843
+ ++ NDS +A D + Q PSYYVAL SDN+WY FTEKWIK VY+ G P
Sbjct: 755 IVSLVE-NDS----PVAGKQKVDNEGQQYYPSYYVALSSDNSWYLFTEKWIKAVYKTGLP 809
Query: 844 NVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLS 903
V A+G LPRET+ LL + +M+W+K+A SE+G L CM+GSL+TWSWSLNVPVL+SLS
Sbjct: 810 AVPSAEGGPLPRETLKQLLLREDMMWDKIAKSEYGSLLCMDGSLDTWSWSLNVPVLNSLS 869
Query: 904 ESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLK 963
E DEV S E+ DAVE +K+QR KV++LKK I T+GFKE++KI+D FT+EKI+RL+
Sbjct: 870 EDDEVERFSQEHQDAVECHKQQRKKVSQLKKTIRSTKGFKEFQKIIDMRNFTKEKIERLE 929
Query: 964 ARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLA 1023
ARS+RLT+RI QIEP+GWKEFL+IS VI E RALDINTQVI+PLGETAAAIRGENELWLA
Sbjct: 930 ARSRRLTRRIRQIEPTGWKEFLQISKVIQEARALDINTQVIYPLGETAAAIRGENELWLA 989
Query: 1024 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSF 1083
MVLRNK+LLDLKP+QLAA+C SLVSEGIK+R WKN+S +YEPS+ V VIN L+E R+S
Sbjct: 990 MVLRNKVLLDLKPSQLAAICGSLVSEGIKLRPWKNSSYVYEPSSVVTGVINYLEEQRNSL 1049
Query: 1084 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 1143
++LQEKH V+IPC +D+QF+GMVEAWASGLTWRE+MMD A+DDGDLARLLRRTIDLLAQI
Sbjct: 1050 VDLQEKHSVKIPCEIDAQFAGMVEAWASGLTWREIMMDSAMDDGDLARLLRRTIDLLAQI 1109
Query: 1144 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 1174
PKLPD+D LQKNA A N+MDR PISELAG
Sbjct: 1110 PKLPDIDPVLQKNAQIACNIMDRVPISELAG 1140
>gi|218191542|gb|EEC73969.1| hypothetical protein OsI_08870 [Oryza sativa Indica Group]
Length = 1065
Score = 1351 bits (3496), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 693/1032 (67%), Positives = 817/1032 (79%), Gaps = 50/1032 (4%)
Query: 148 DVDELASIYDFRI----DKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
DVDE +++ + D R +I+AFLRGSSVVVSAPTSSGKTLIAEAAAVATVA R
Sbjct: 79 DVDEEFLLFEATLEISDDSETRLAIQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGR 138
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
R+FYTTPLKALSNQKFR+FR TFGD+NVGLLTGDSAIN++AQILIMTTEILRNMLYQSVG
Sbjct: 139 RLFYTTPLKALSNQKFRDFRNTFGDHNVGLLTGDSAINKDAQILIMTTEILRNMLYQSVG 198
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
M +SE LF VDVIVLDEVHYLSDISRGTVWEE +IYCPKEVQ+ICLSATVAN DELAGW
Sbjct: 199 MAASEGRLFQVDVIVLDEVHYLSDISRGTVWEETVIYCPKEVQLICLSATVANPDELAGW 258
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQ-LSTSEVKP 382
IGQIHGKTEL+TS +RPVPLTW+FS K AL+PLLD KGK MNRKL +++ Q LS+ + +
Sbjct: 259 IGQIHGKTELVTSHKRPVPLTWHFSKKFALVPLLDGKGKKMNRKLRMSHFQNLSSPKSEF 318
Query: 383 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
Y G R+ + ++ N + + S Q QLSK+ + +RRSQVP + DTL L DML
Sbjct: 319 YYVKGKRKLRTTENEQGNRSPLDIS-KQVQLSKHELTNMRRSQVPLIRDTLSQLWENDML 377
Query: 443 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGV 502
PAIWFIF+RRGCDAAV+YLEDC LL +CE SEVEL LKRFR+ YPDA+RE A+KGLL+GV
Sbjct: 378 PAIWFIFSRRGCDAAVEYLEDCRLLHDCEASEVELELKRFRMQYPDAIRESAVKGLLRGV 437
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
AAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPART+V+SSLSKR +GR L
Sbjct: 438 AAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTSVISSLSKRIDAGRQLL 497
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
T NELFQMAGRAGRRGID GH VLVQT YEG EECC ++FAG+EPLVSQFTASYGMVLN
Sbjct: 498 TPNELFQMAGRAGRRGIDTVGHSVLVQTTYEGPEECCDVIFAGLEPLVSQFTASYGMVLN 557
Query: 623 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKET 682
LLAG+KV H ESDD+K ++GR+LEEARKLVEQSFGNYVGSNVM+AAK+EL +IQ E
Sbjct: 558 LLAGSKVTHNQKESDDIKVKRSGRTLEEARKLVEQSFGNYVGSNVMVAAKEELERIQSEI 617
Query: 683 DVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDI 742
L+SEI+D++IDRK R LSE Y E++ LQ++LK
Sbjct: 618 QYLSSEITDESIDRKCREELSEEDYAEISLLQKKLK------------------------ 653
Query: 743 LKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQS 802
YKD + V+H++PAV++G S K+ ++ NDS +A
Sbjct: 654 ---------------YKDKDSVQHTIPAVFIGSLSSFADQKIVSLVE-NDS----PVAGK 693
Query: 803 NGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLL 862
D + Q PSYYVAL SDN+WY FTEKWIK VY+ G P V A+G LPRET+ LL
Sbjct: 694 QKVDNEGQQYYPSYYVALSSDNSWYLFTEKWIKAVYKTGLPAVPSAEGGPLPRETLKQLL 753
Query: 863 DKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENY 922
+ +M+W+K+A SE+G L CM+GSL+TWSWSLNVPVL+SLSE DEV S E+ DAVE +
Sbjct: 754 LREDMMWDKIAKSEYGSLLCMDGSLDTWSWSLNVPVLNSLSEDDEVERFSQEHQDAVECH 813
Query: 923 KEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWK 982
K+QR KV++LKK I T+GFKE++KI+D FT+EKI+RL+ARS+RLT+RI QIEP+GWK
Sbjct: 814 KQQRKKVSQLKKTIRSTKGFKEFQKIIDMRNFTKEKIERLEARSRRLTRRIRQIEPTGWK 873
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
EFL+IS VI E RALDINTQVI+PLGETAAAIRGENELWLAMVLRNK+LLDLKP+QLAA+
Sbjct: 874 EFLQISKVIQEARALDINTQVIYPLGETAAAIRGENELWLAMVLRNKVLLDLKPSQLAAI 933
Query: 1043 CASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQF 1102
C SLVSEGIK+R WKN+S +YEPS+ V VIN L+E R+S ++LQEKH V+IPC +D+QF
Sbjct: 934 CGSLVSEGIKLRPWKNSSYVYEPSSVVTGVINYLEEQRNSLVDLQEKHSVKIPCEIDAQF 993
Query: 1103 SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASN 1162
+GMVEAWASGLTWRE+MMD A+DDGDLARLLRRTIDLLAQIPKLPD+D LQKNA A N
Sbjct: 994 AGMVEAWASGLTWREIMMDSAMDDGDLARLLRRTIDLLAQIPKLPDIDPVLQKNAQIACN 1053
Query: 1163 VMDRPPISELAG 1174
+MDR PISELAG
Sbjct: 1054 IMDRVPISELAG 1065
>gi|14423540|gb|AAK62452.1|AF387007_1 Similar to Synechocystis antiviral protein [Arabidopsis thaliana]
Length = 916
Score = 1228 bits (3176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 629/924 (68%), Positives = 745/924 (80%), Gaps = 28/924 (3%)
Query: 12 TFPVFANTKPFSFHQFH------TLSHTLGFCIPKPL-LSSNSIQFQASYKSPKSFFPTE 64
T PV + T SF FH +LSH+ F K L L+ N + F+++ S P++
Sbjct: 3 TLPVVSLTASSSFKFFHFPSLHRSLSHSPNFSFTKSLILNPNHLSFKSTLNS---LSPSQ 59
Query: 65 HKLTDADEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSD-----DEFEVSSDSSP 119
+L + ++ +E ++D E+ DE D +SDEI+ SD +E E S D P
Sbjct: 60 SQLYEEEDDEEEEEED------EDDDDEAADEYDNISDEIRNSDDDDDDEETEFSVDL-P 112
Query: 120 APSWRE--EFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSV 177
S RE EF+WQRVEKL + V++FG EMID+DEL SIYDFRIDKFQR +IEAFLRGSSV
Sbjct: 113 TESARERVEFRWQRVEKLRSLVRDFGVEMIDIDELISIYDFRIDKFQRLAIEAFLRGSSV 172
Query: 178 VVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGD 237
VVSAPTSSGKTLIAEAAAV+TVA RR+FYTTPLKALSNQKFREFRETFGD+NVGLLTGD
Sbjct: 173 VVSAPTSSGKTLIAEAAAVSTVAKGRRLFYTTPLKALSNQKFREFRETFGDDNVGLLTGD 232
Query: 238 SAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEI 297
S IN++AQI+IMTTEILRNMLYQSVGM SS +GLF VD IVLDEVHYLSDISRGTVWEEI
Sbjct: 233 SDINKDAQIVIMTTEILRNMLYQSVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEI 292
Query: 298 IIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL 357
+IYCPKEVQ+ICLSATVAN DELAGWIG+IHGKTEL+TS+RRPVPLTWYFSTK +LLPLL
Sbjct: 293 VIYCPKEVQLICLSATVANPDELAGWIGEIHGKTELVTSTRRPVPLTWYFSTKHSLLPLL 352
Query: 358 DEKGKHMNRKLSLNYLQLSTSEVK--PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSK 415
DEKG ++NRKLSLNYLQLS SE + DG +RR+ ++ D + NN+V + + LSK
Sbjct: 353 DEKGINVNRKLSLNYLQLSASEARFRDDDDGYRKRRSKKRGGDTSYNNLV-NVTDYPLSK 411
Query: 416 NSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV 475
N IN IRRSQVPQ+ DTLWHL+ ++MLPAIWFIFNRRGCDAAVQY+E+ LLD+CE SEV
Sbjct: 412 NEINKIRRSQVPQISDTLWHLQGKNMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEV 471
Query: 476 ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 535
ELALK+FR+LYPDAVRE A KGLL+G+AAHHAGCLP+WKSFIEELFQRGLVKVVFATETL
Sbjct: 472 ELALKKFRVLYPDAVRESAEKGLLRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETL 531
Query: 536 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 595
AAGINMPARTAV+SSLSK+ + RI+L NEL+QMAGRAGRRGID +G+ VLVQT +EGA
Sbjct: 532 AAGINMPARTAVISSLSKKAGNERIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGA 591
Query: 596 EECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV 655
EECCKL+FAGV+PLVSQFTASYGMVLNL+AG+KV S+ ++ K LQAGRSLEEA+KLV
Sbjct: 592 EECCKLVFAGVKPLVSQFTASYGMVLNLVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKLV 651
Query: 656 EQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQE 715
E+SFGNYV SNV +AAK EL +I + ++L+SEISD+AID+KSR+LLS YKE+ L+E
Sbjct: 652 EKSFGNYVSSNVTVAAKQELAEIDNKIEILSSEISDEAIDKKSRKLLSARDYKEITVLKE 711
Query: 716 ELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGK 775
EL+ EKR R E RRRMEL+RF ALK +LK E G+LPF+CL++KDSEG E SVPAVYLG
Sbjct: 712 ELREEKRKRAEQRRRMELERFLALKPLLKGMEEGNLPFICLEFKDSEGREQSVPAVYLGH 771
Query: 776 FDSLDSSKLKNMASINDSFALNRLA-QSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWI 834
DS SKL+ M S+++SFALN + + D+ +VKPSYYVALGSDN+WY FTEKW+
Sbjct: 772 IDSFQGSKLQKMMSLDESFALNLIEDELAADEPGKPNVKPSYYVALGSDNSWYLFTEKWV 831
Query: 835 KTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSL 894
+TVYR GFPN+ALA GDALPRE M LLDK +M W+KLA+SE G LW +EGSLETWSWSL
Sbjct: 832 RTVYRTGFPNIALALGDALPREIMKNLLDKADMQWDKLAESELGSLWRLEGSLETWSWSL 891
Query: 895 NVPVLSSLSESDEVLHMSFEYHDA 918
NVPVLSSLS+ DEVLHMS EY +A
Sbjct: 892 NVPVLSSLSDEDEVLHMSEEYDNA 915
>gi|224110980|ref|XP_002315703.1| predicted protein [Populus trichocarpa]
gi|222864743|gb|EEF01874.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 1171 bits (3030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/736 (77%), Positives = 648/736 (88%), Gaps = 2/736 (0%)
Query: 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK 500
MLPAIWFIFNRRGCDAAVQYLE C LLDECE SEVELALKRF + PDAVRE A+KGLL+
Sbjct: 1 MLPAIWFIFNRRGCDAAVQYLEGCRLLDECEASEVELALKRFSVQNPDAVRETAVKGLLR 60
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
GVAAHHAGCLP+WKSFIEELFQRGL+KVVFATETLAAGINMPARTAV+SSLS+R++SGRI
Sbjct: 61 GVAAHHAGCLPLWKSFIEELFQRGLIKVVFATETLAAGINMPARTAVISSLSRRSSSGRI 120
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
L+ NEL QMAGRAGRRGID RGHVVLVQ EGAEECCKLLFAG+EPLVSQFTASYGMV
Sbjct: 121 PLSPNELLQMAGRAGRRGIDERGHVVLVQASNEGAEECCKLLFAGLEPLVSQFTASYGMV 180
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
LNLLAGAK+ SNES++MK LQAGR+L+EARKLVE+SFG Y+GSNVMLA+K+EL KIQK
Sbjct: 181 LNLLAGAKITRRSNESNEMKVLQAGRTLKEARKLVEKSFGTYIGSNVMLASKEELAKIQK 240
Query: 681 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALK 740
E ++LTSE SDDAIDRKSR++LS+ AYKE+A LQE+L+ EKR RTELRR+ME KR +ALK
Sbjct: 241 EIEMLTSETSDDAIDRKSRKILSDGAYKEIAILQEQLREEKRLRTELRRKMETKRLNALK 300
Query: 741 DILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLA 800
+LK+ N LPFLCL+YKDSEGVEHSVPAVYLG DS D SK KNM S DS A N
Sbjct: 301 ILLKELGNDRLPFLCLKYKDSEGVEHSVPAVYLGNADSFDGSKFKNMVSDIDSLAQNVAP 360
Query: 801 -QSNGDDYDT-QDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETM 858
+SN + +T +DV+PSY+VALGSDN+WY FTEKWIKTVYR G PNVAL+ GD LP E M
Sbjct: 361 IESNVSEVETHKDVEPSYHVALGSDNSWYLFTEKWIKTVYRTGLPNVALSLGDDLPHEVM 420
Query: 859 SLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDA 918
+LLD+ E WEKLA+SE GGLW MEGSLETWSWSLNVPVL+SLSE DEVLHMS YHDA
Sbjct: 421 WMLLDREEKQWEKLAESELGGLWYMEGSLETWSWSLNVPVLNSLSEIDEVLHMSQAYHDA 480
Query: 919 VENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEP 978
VE+YK+QR KVARLKK IARTEGFKEYK+I+D FTE+KIKRLK RS RL++R+++IEP
Sbjct: 481 VESYKDQRNKVARLKKTIARTEGFKEYKRILDWKNFTEDKIKRLKMRSNRLSERLQEIEP 540
Query: 979 SGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 1038
SGWKEFL+ISNV+HE+RALDINTQVIFPLGETAAAIRGENELWLAMVLR++ILLDLKP Q
Sbjct: 541 SGWKEFLKISNVVHESRALDINTQVIFPLGETAAAIRGENELWLAMVLRSRILLDLKPGQ 600
Query: 1039 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 1098
LAAVCAS+VSEGIKVR W+NN+ IYEPS+ VINVIN+L+E RS+ +LQEKHGVEI CCL
Sbjct: 601 LAAVCASVVSEGIKVRAWENNNYIYEPSSAVINVINILNEQRSNLSKLQEKHGVEITCCL 660
Query: 1099 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 1158
DSQFSGMVEAWA+GLTW+EMMMDCA+DDGDLARLLRRTID+LAQIPKLPD+D LQ NA
Sbjct: 661 DSQFSGMVEAWAAGLTWKEMMMDCAMDDGDLARLLRRTIDILAQIPKLPDIDPVLQSNAK 720
Query: 1159 DASNVMDRPPISELAG 1174
AS++MDRPPISEL G
Sbjct: 721 TASSIMDRPPISELTG 736
>gi|168047391|ref|XP_001776154.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672529|gb|EDQ59065.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1025
Score = 974 bits (2519), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/1033 (52%), Positives = 709/1033 (68%), Gaps = 34/1033 (3%)
Query: 167 SIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETF 226
SIE FL+GSS+VV APTSSGKTL+AEAAA AT+A +R+FYTTPLKALSNQK R+FRE F
Sbjct: 2 SIEGFLKGSSLVVCAPTSSGKTLVAEAAAAATIARGKRLFYTTPLKALSNQKLRDFRELF 61
Query: 227 GDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286
G+ NVGL+TGD+A+NREA ILIMTTEILRNMLYQSVG + L +VDV+VLDEVHYLS
Sbjct: 62 GEENVGLVTGDAAVNREAPILIMTTEILRNMLYQSVGNMEDGGRLMNVDVVVLDEVHYLS 121
Query: 287 DISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWY 346
DISRGTVWEE +IYCPKEVQ+ICLSATVAN +ELAGWI Q+HG TEL+TSSRRPVPL W+
Sbjct: 122 DISRGTVWEETVIYCPKEVQLICLSATVANPEELAGWIAQVHGPTELVTSSRRPVPLVWH 181
Query: 347 FSTKTALLPLLDEKGKHMNRKLS----------------LNYLQLSTSEVKPYKDGGSRR 390
FST+ L PLL+E+G MN +L+ L+Y + + K + G + +
Sbjct: 182 FSTRYGLNPLLNEQGDEMNWRLNLKKIERERVSDPFWDELDYDSPTRKQRKFLRAGKAPK 241
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
+ + +N + ++S + +RR QVPQ+ DTL L+ RDMLPAIWFIF+
Sbjct: 242 ESGNRSERRRRSNGGWGETEEKMSDEEVQFLRRKQVPQIRDTLNQLKERDMLPAIWFIFS 301
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCL 510
RRGCD AV YL +LL E V AL FR +PD+VRE A+K LL GVAAHHAGCL
Sbjct: 302 RRGCDLAVHYLLGTDLLTIEEQRRVRKALDNFREQHPDSVREVAVKPLLHGVAAHHAGCL 361
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
P WK+FIEELFQ+GL+KVVFATETLAAGINMPART VL+SLSKR +G L++N + QM
Sbjct: 362 PTWKAFIEELFQQGLIKVVFATETLAAGINMPARTTVLASLSKRGDNGHQLLSANSMLQM 421
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 630
AGRAGRRGID +GH V+VQTP+EGAE+CCKLLFAG +PLVSQFTA+YGM LNLLAGA+V
Sbjct: 422 AGRAGRRGIDEQGHTVVVQTPFEGAEDCCKLLFAGPDPLVSQFTATYGMALNLLAGARV- 480
Query: 631 HLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS 690
+ ES ++ ++ GRSL+EAR L+E+SFGNYVGS VM+AAK +L ++QK+ + L + +
Sbjct: 481 KTTTESGAVEMVKVGRSLDEARALIEKSFGNYVGSEVMVAAKQQLARLQKDIEYLEKDYT 540
Query: 691 DDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGH 750
D D +SR L+ +E +L+E+ K KRF E RR +E R + ++ +L +G
Sbjct: 541 VDD-DLESR--LTRDELQEYLDLKEKAKEAKRFMREQRREVEQMRVAMVQPLLDAPTDGK 597
Query: 751 LPFLCLQ-YKDSEGVEHSVPAVYLGKFDSLD-SSKLKNMAS---INDSFALNRLAQSNGD 805
PF+CL Y+ G E VPA+++G S L N+AS ++ F N +S+ +
Sbjct: 598 PPFICLSFYEHRTGEERRVPALFVGCVPRPPFVSDLVNLASEKGQSEEFNDNHDEESSTE 657
Query: 806 DYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKG 865
D + DV +YVALGSDN WY FT + +K+V+ A G E + L G
Sbjct: 658 DDNDPDV--LHYVALGSDNAWYMFTARSVKSVHTNSVNFGASTPGGKPVEELLKEKLQVG 715
Query: 866 EMLWEKLADS---EFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENY 922
WE L S G +W + S++TW W VPVLS LS + EV S + A
Sbjct: 716 IRKWENLGRSGSGPLGCVWSADSSIDTWGWGCQVPVLSELSGAHEV---SLDLVKAERVL 772
Query: 923 KEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWK 982
++R + ++L+KK+ +T+G++E +K+VD + +K++R+ A++ R++ RI Q++PSGWK
Sbjct: 773 LDRRKEASKLRKKLKQTQGYRESRKLVDLQRSRFDKLQRITAKANRISNRISQMQPSGWK 832
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
EFL++ V+ E AL +T ++ PLGE AA+ RG NELWLA+V + IL + PAQLAA
Sbjct: 833 EFLQVVKVLQEAGALKPDTNLLTPLGEVAASTRGVNELWLAIVFTSGILNSIAPAQLAAA 892
Query: 1043 CASLVSEGIKVRLWKN-NSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQ 1101
CA LVS+G+K R SSIY+ S V ++E RS + Q KHGV I ++++
Sbjct: 893 CACLVSDGMKARSKDGPTSSIYDASDAVNEWAENMEEARSWLVRTQSKHGVAISVEINTE 952
Query: 1102 FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDAS 1161
F+G+VEAWA+G+TW+E+M D +D+GD+ARLLRR+IDLLAQIP LP +D L +A +AS
Sbjct: 953 FAGLVEAWAAGVTWKELMDDIEMDEGDVARLLRRSIDLLAQIPHLPHIDPNLAMSAREAS 1012
Query: 1162 NVMDRPPISELAG 1174
N+MDRPPISEL G
Sbjct: 1013 NIMDRPPISELLG 1025
>gi|168044682|ref|XP_001774809.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673833|gb|EDQ60350.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1036
Score = 927 bits (2396), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/1056 (46%), Positives = 696/1056 (65%), Gaps = 64/1056 (6%)
Query: 147 IDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIF 206
+ ++++AS+YDF +D FQ + +FL GSS+VV APTSSGKTLIAEAAA A +A +R+
Sbjct: 13 LSLEDVASLYDFPLDNFQERGVTSFLEGSSLVVCAPTSSGKTLIAEAAAAAILARGKRLL 72
Query: 207 YTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVS 266
YTTPLKALSNQKFREF+ TFG+NNVGLLTGD+ +NR+A I++MTTEILRNMLY+SVG +
Sbjct: 73 YTTPLKALSNQKFREFQGTFGENNVGLLTGDAVVNRKAPIMVMTTEILRNMLYESVGSSA 132
Query: 267 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326
+ L DVD IVLDEVHYLSDISRGTVWEE IIYCPK+VQ+ICLSATVAN DELAGWI +
Sbjct: 133 GKGWLTDVDAIVLDEVHYLSDISRGTVWEETIIYCPKDVQLICLSATVANPDELAGWITK 192
Query: 327 IHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN-RKLSLNYLQ---LSTSEVKP 382
+HG T+LIT+S+RPVPL W+FST+ ALLPLL+E+ MN +++ ++Y + P
Sbjct: 193 VHGPTQLITASKRPVPLQWHFSTRQALLPLLNEESTAMNPKRMFMDYFGEELYKNDQPSP 252
Query: 383 YKD----GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS 438
+ GG R SR + + +LS+ + +RR QVP+++DTL L+
Sbjct: 253 LRTKTGFGGKDRGESRTQKGKDI--------EKKLSEEQLMFLRRKQVPKIMDTLMQLKE 304
Query: 439 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL 498
RDMLPA+WFIF+R+GCDAAV Y+++CNLL + E+ +V+ AL+ ++ +PDA+R ++K L
Sbjct: 305 RDMLPAMWFIFSRKGCDAAVSYVQECNLLSDDEVKQVQEALREYQHQHPDAIRHRSVKAL 364
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
L+G AAHHAGCLP WK+FIEELFQ+GLVKVVF TETLAAG+NMP RT+V+SS+SKR+ G
Sbjct: 365 LQGAAAHHAGCLPTWKAFIEELFQKGLVKVVFTTETLAAGVNMPTRTSVISSMSKRSNDG 424
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
L+SN + QMAGRAGRRGID++GHVV+VQTP+EGAE+ C++LFAG EPLVSQFT +YG
Sbjct: 425 LALLSSNAMLQMAGRAGRRGIDDQGHVVVVQTPFEGAEDFCEVLFAGPEPLVSQFTTTYG 484
Query: 619 MVLNLLAGAKVMHLSNESDD---MKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDEL 675
MVLNLLAG +V L +S + ++ + RSLEE LV+QSFGN+VGS+V+++A+ L
Sbjct: 485 MVLNLLAGPRVAILEEKSHNDERVRMTRRPRSLEEVNALVDQSFGNFVGSDVLVSAQQHL 544
Query: 676 CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKR 735
+++E + L +EI+ + + L++ +E L + + ++ +R +M ++R
Sbjct: 545 TSLRQEIERLQAEITSEGFFSCLAKELNKKQLQEYTALSKRVAKSQQQLQHIREKM-VER 603
Query: 736 FSALKDILKDFENGHLPFLCLQYKDS-EGVEHSVPAVYLGKFDSL----DSSKLKNMAS- 789
F D LPFLC+++KD G E VP V +G SL D+ L + AS
Sbjct: 604 FIGSDD-------NPLPFLCVEFKDQMTGEERVVPVVCIGSSPSLTVETDTQGLMSTASN 656
Query: 790 INDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYR---IGFPNVA 846
I +A+ S+YV LGSDN WY FT +K+V+ I N A
Sbjct: 657 IEGGYAIGSAI--------------SHYVGLGSDNYWYMFTGGSVKSVHNNLLISSTNSA 702
Query: 847 LAQGDALPRETMSLLLDKGEMLWEKLAD---SEFGGLWCMEGSLETWSWSLNVPVLSSLS 903
RE + + G ++W K+ + S +W E +T++W+ VP L+
Sbjct: 703 GECVGTFLRERLRI----GLLVWAKVGESGTSSCHAVWNGESGADTFAWACQVPSAHELA 758
Query: 904 ESDEV-------LHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTE 956
+ +V L S + +A + + V +L KK+ +T+G+++YK ++D +
Sbjct: 759 KEWQVIFICISTLQGSSDLVNAEKTLANHKEDVVKLTKKLKQTQGYRKYKLLLDLQQKRR 818
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
+KI LK+ + + R++ + PS W++FL + +V+ E AL ++ + PLGETAA +RG
Sbjct: 819 KKITNLKSTASDIANRMKDLRPSEWQDFLHVMSVLQEAGALSADSNSLLPLGETAAVVRG 878
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
NELWL + + L+PAQLAA C +LVSEG+K R N S Y S V + + +
Sbjct: 879 TNELWLTLAVTRDATYSLEPAQLAAACGALVSEGMKTRNKSNTSMKYSESRGVRDWVIKM 938
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 1136
++ R L LQ HGVEIP LD F+G++EAWASG++W+E++ C +D+GD ARLLR+T
Sbjct: 939 EDLREWVLRLQASHGVEIPVLLDKSFAGILEAWASGVSWQELIEHCDMDEGDAARLLRKT 998
Query: 1137 IDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 1172
+DL++QIP LP +D +++ NA A MDR PISEL
Sbjct: 999 LDLVSQIPYLPHIDPKIETNARAAQAAMDRSPISEL 1034
>gi|302768241|ref|XP_002967540.1| hypothetical protein SELMODRAFT_440019 [Selaginella moellendorffii]
gi|300164278|gb|EFJ30887.1| hypothetical protein SELMODRAFT_440019 [Selaginella moellendorffii]
Length = 1889
Score = 843 bits (2178), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/1079 (46%), Positives = 677/1079 (62%), Gaps = 93/1079 (8%)
Query: 107 SDDEFEVSSD--SSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQ 164
SDD E +D S S+ E + +R++ LC +V + + I +L +Y FR+DKFQ
Sbjct: 892 SDDGAEEGADDASEELDSFAE--RARRIDDLCAKVAQ--GKQISSADLIGLYSFRLDKFQ 947
Query: 165 RSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE 224
R +IE FL+GSSVVVSAPTSSGKTLIAEAAA AT+A +R+FYTTPLKALSNQKFR+FR+
Sbjct: 948 RLAIEGFLKGSSVVVSAPTSSGKTLIAEAAAAATLAKCKRLFYTTPLKALSNQKFRDFRK 1007
Query: 225 TFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284
FGD++VGLLTGD +INR+A I+IMTTEI+RN Y S G +E L D+DV+VLDE+HY
Sbjct: 1008 IFGDSSVGLLTGDVSINRDAPIVIMTTEIMRNKFYLSAG---NEDVLQDLDVVVLDEIHY 1064
Query: 285 LSDISRGTVWEEI--IIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVP 342
+SD++RGTVWEE +IYCPK ++++CLSAT+AN DELAGWI ++HG TELITS RRPVP
Sbjct: 1065 ISDLTRGTVWEETARVIYCPKRIKLVCLSATIANPDELAGWIAKVHGPTELITSYRRPVP 1124
Query: 343 LTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSN 402
LTW+ S ++ +LPLL+EKG +NRKL ++ QL EV NSRK S
Sbjct: 1125 LTWHISRRSQMLPLLNEKGTAINRKLLIDKKQLE--EV-----------NSRKIRGRIST 1171
Query: 403 NIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLE 462
++++ + + R QVP++ DTL + R MLPAIWFI +RR CD AVQYL+
Sbjct: 1172 -------LEKMTEEQLQVLLRVQVPRISDTLKQMVERTMLPAIWFILSRRRCDEAVQYLQ 1224
Query: 463 DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQ 522
NLL E E +++LALK FR YPDA+RE A++ L +GVAAHHAGCLP+WKSFIEELFQ
Sbjct: 1225 HANLLAEDEFQQIDLALKSFREQYPDAIREAAVRPLYQGVAAHHAGCLPLWKSFIEELFQ 1284
Query: 523 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 582
+GLVKVVFATETLAAGINMPART VLSS S + ++++N + QMAGRAGRRGID
Sbjct: 1285 KGLVKVVFATETLAAGINMPARTTVLSSFSGKYQR---RISANVVLQMAGRAGRRGIDKE 1341
Query: 583 GHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKAL 642
GHVV+VQTP+ G EEC K+L G+EPLVSQFTA+YGM LNLL + V ES+ + +
Sbjct: 1342 GHVVVVQTPFRGPEECYKMLRTGLEPLVSQFTATYGMALNLLEDSAV-----ESETLSSE 1396
Query: 643 QAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLL 702
Q +S EAR L+EQSFGNY+GS ++ A+ ++ +I E + L S S D++ + L
Sbjct: 1397 QR-QSFGEARSLIEQSFGNYIGSEILTGARAKMVQISSEIETLESGQSTDSLSK-----L 1450
Query: 703 SEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKD-- 760
E E ++E+++ ++R LR + E R S L+ LK +P++ L Y+D
Sbjct: 1451 YEEKINEFNKMREKVETQERKERSLRFKFERHRLSFLQSQLKQLSLEQVPYVLLTYEDIN 1510
Query: 761 -SEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFAL--NRLAQSNGDDYDTQDVKPSYY 817
EG SV ++ + N+ F L N + +D D +
Sbjct: 1511 TGEGHTLSVAVFHMTE---------------NNPFILGVNENHEPKVEDMDAS------F 1549
Query: 818 VALGSDNTWYTFTEKWIKTVYR--IGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADS 875
+ +G D+ Y F K ++ VYR IG E +L + ++ WE + +
Sbjct: 1550 IGVGCDSFLYRFPLKVVRKVYRSTIG------------AEERTALKSNLADVQWEIVGND 1597
Query: 876 EFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKK 935
C + S + VPV ++L+ M E A + Q+ + + ++
Sbjct: 1598 NVS--RC-QSSFPPHGY--EVPVPNTLTSE---CAMPEELVTAEKLLLMQQRSLGKWSRR 1649
Query: 936 IARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETR 995
+A + + + + EEK+ RLKA+ +R+ KRI+ ++PSGWKEFL++ ++ +
Sbjct: 1650 LAEIDEVEIDNLVAKVKQMREEKVARLKAKLERIGKRIKGMQPSGWKEFLQVVKILKDAG 1709
Query: 996 ALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRL 1055
A+D NT + PLGE A AIRG NELWLA+ LR++ LL LKP++LAAV A+LV+E K
Sbjct: 1710 AMDRNTHKLLPLGEIARAIRGSNELWLAIALRDEALLSLKPSELAAVAAALVTESPKSIP 1769
Query: 1056 WKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTW 1115
+IYEPS V + + R LQE H VE C LD Q +G VEAWA+G+ W
Sbjct: 1770 DNEYRTIYEPSAVVKEWVEKMQSERLWLYGLQENHNVEFACDLDPQLAGFVEAWAAGVNW 1829
Query: 1116 REMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG 1174
+E+ ++ +D+GD ARLLRRTIDLL+QIP LP +D L K A +A+ MDRPPISE G
Sbjct: 1830 KELEIEDIMDEGDFARLLRRTIDLLSQIPHLPHIDSELSKIAKEAARNMDRPPISEPVG 1888
>gi|308808266|ref|XP_003081443.1| DNA polymerase theta/eta, DEAD-box superfamily (ISS) [Ostreococcus
tauri]
gi|116059906|emb|CAL55965.1| DNA polymerase theta/eta, DEAD-box superfamily (ISS) [Ostreococcus
tauri]
Length = 1096
Score = 640 bits (1652), Expect = e-180, Method: Compositional matrix adjust.
Identities = 409/1118 (36%), Positives = 595/1118 (53%), Gaps = 154/1118 (13%)
Query: 130 QRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTL 189
+R+E L ++ + + V ++ Y + +D FQ + + L+GSSVVVSAPT SGKTL
Sbjct: 59 ERLETLLSKATQ---STVSVRDIEDFYPYNLDVFQIDATKVLLKGSSVVVSAPTGSGKTL 115
Query: 190 IAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIM 249
+ E A + +A + YTTPLKALSNQK REF++ FG GL TGD IN +A ++IM
Sbjct: 116 VGETAILTALARGEKAIYTTPLKALSNQKLREFQKIFGKRRCGLKTGDVDINGDADVMIM 175
Query: 250 TTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIIC 309
TTEILRNMLY S + L DV +IVLDEVHYLSD RGTVWEE IIYCP +Q++C
Sbjct: 176 TTEILRNMLYSSAAGGRDDDRLSDVSIIVLDEVHYLSDPGRGTVWEETIIYCPSRIQLLC 235
Query: 310 LSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALL-----PLLDEKGKHM 364
LSATV N ++L+GWI ++HG + I SS RPVPLTW +S K + L PLL+ KG +
Sbjct: 236 LSATVGNPEDLSGWIEEVHGPCDTIVSSYRPVPLTWQYSMKPSRLYPGLGPLLNFKGTKL 295
Query: 365 NRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFG-QHQLSKNSINAIRR 423
+ L +P+ G ++RN +N FG Q S+ S +RR
Sbjct: 296 HHDL------------RPFTREGLQQRN---------DNWEDGFGRQGPSSRESERILRR 334
Query: 424 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC--NLLDECEMSEVELALKR 481
VP V T+ L + DM+PA+WFIF+R+GCD +V YL NL+ E ++++AL+
Sbjct: 335 RFVPHVETTVQQLIASDMIPAVWFIFSRKGCDQSVDYLMQAGGNLVTRAEREQIDVALEE 394
Query: 482 FRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 541
F A+R I+ L +GVA+HHAG LP WK +E+LFQRGL+KVVFATETLAAG+NM
Sbjct: 395 FSKDNKSAIRTAMIEPLRRGVASHHAGLLPAWKGLVEKLFQRGLIKVVFATETLAAGVNM 454
Query: 542 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 601
PAR +VLS+LSKR G LTSNE QMAGRAGRRG D GHVV Q+P+EG +E +L
Sbjct: 455 PARCSVLSALSKRDDQGPRLLTSNEFMQMAGRAGRRGFDTVGHVVCCQSPFEGPDEAFEL 514
Query: 602 LFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN 661
+ + E L SQF+ SYGMVLNLL GRSL++ + +VE+SFGN
Sbjct: 515 VISPPENLKSQFSISYGMVLNLL-------------------QGRSLKQVQGIVERSFGN 555
Query: 662 YVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEK 721
Y+G + EL ++ + L +I D D + A +K L E LK EK
Sbjct: 556 YLGGKARSVRERELHRVDVQIGKLAKQIEDTNDDEDA------ADWKRFVKLDERLKEEK 609
Query: 722 R-FRTELRRRMELKRFSALKDILKDFENGHLPFLC---------LQYKDSEGVEHSVPAV 771
R + R+ E++ + I + P + ++ K+ ++
Sbjct: 610 RLLKILFRQEAEMQAIEIRETIQNRLKQSGGPVVVNIDVGDNTLIRRKERRSATIALFED 669
Query: 772 YLGKFDSLDSS---KLKNMASINDSFALNRL---------AQSNGDDY-----DTQDVKP 814
L K + D + +L+++ S +D+ +L+ L +S+ DD+ D DV P
Sbjct: 670 DLLKVEGQDFAGEWRLQDIDS-DDAPSLDELFGDESEDDKQRSDSDDFMQSVDDMADVTP 728
Query: 815 ------------------------------SYYVALGSDNTWYTFTEKWIKTVYRIGFPN 844
+ ALGSD WY F IK+ IG
Sbjct: 729 RRLITAAIVEAVPSSKIAPTASAIGKPYPMGEFSALGSDGAWYRFYSDRIKS---IGVGT 785
Query: 845 VALAQGD----ALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVP--- 897
AL D P + SL W + + GGL W +VP
Sbjct: 786 TALRSEDIADAGSPPSSSSL-------RWIRASG---GGL-----------WKADVPKKG 824
Query: 898 --VLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFT 955
V + E + L + + ++ E Q+ ++ R +++I + E + K
Sbjct: 825 KRVADRVLEGADSLLDAIQSSESTEYINAQKLQIQRTREEINSLKNVAELRSTAKQQKKR 884
Query: 956 EEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIR 1015
EEK+K+LK + + +RI++ +GW+EFLR+ +++ E AL+ + + GE A +R
Sbjct: 885 EEKLKKLKTKRDSIERRIKEYSAAGWEEFLRVVDILVECGALESESLKLLEFGEICADLR 944
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 1075
GENELWL M + + ++ +L A LA +L + + + Y PS ++ I
Sbjct: 945 GENELWLGMAMSSPLVAELDVATLAGFAGALCMDN------RPATCFYNPSQNLVEAIEH 998
Query: 1076 LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRR 1135
++ LQ V++P L + + +VE+WASG +W ++ D +LD+GD+ARL RR
Sbjct: 999 VEPAMGDLQYLQSTTRVDVPISLSYEVAALVESWASGTSWDQIRNDTSLDEGDIARLFRR 1058
Query: 1136 TIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELA 1173
T +LLAQIP++P + Q L+ A A++V++RPPIS+L+
Sbjct: 1059 TAELLAQIPRVPHLPQNLKTTAKKANDVVNRPPISDLS 1096
>gi|145351001|ref|XP_001419877.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580110|gb|ABO98170.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1055
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 396/1058 (37%), Positives = 584/1058 (55%), Gaps = 95/1058 (8%)
Query: 131 RVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLI 190
R+E L N+ ++V ++ Y + +D FQ + E LRGSSVVVSAPT SGKTL+
Sbjct: 78 RLEALLNKAS---TSPVNVHDIEQFYPYELDGFQVEATELLLRGSSVVVSAPTGSGKTLV 134
Query: 191 AEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMT 250
E A + +A + YTTPLKALSNQK REF++ FG GL TGD IN +A ++IMT
Sbjct: 135 GETAILTALARGEKAIYTTPLKALSNQKLREFQKIFGKRRCGLKTGDVDINGDADVMIMT 194
Query: 251 TEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 310
TEILRNMLY S + L DV +IVLDEVHYL+D SRGTVWEE IIYCP +Q++CL
Sbjct: 195 TEILRNMLYSSAAGGRDDERLADVSIIVLDEVHYLADRSRGTVWEETIIYCPSRIQLLCL 254
Query: 311 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTA-----LLPLLDEKGKHMN 365
SATV N ++L+GWI ++HG+ E + SS RPVPLTW +S K + L PL++ K ++
Sbjct: 255 SATVGNPEDLSGWIEEVHGECETVVSSYRPVPLTWQYSMKPSRMYPGLGPLMNFKSTKIH 314
Query: 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 425
L +P+ R + +N+ + +K S +RR
Sbjct: 315 HDL------------RPFT------REGLQQGSYGNNDWAPD--AQRGAKESERVLRRRF 354
Query: 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC--NLLDECEMSEVELALKRFR 483
VP V T+ L + DM+PA+WFIF+R+GCD +V YL NL+ E E++ ALK F
Sbjct: 355 VPHVETTVQQLIASDMIPAVWFIFSRKGCDQSVDYLVQAGGNLVTSKERREIDDALKEFS 414
Query: 484 ILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 543
AVR ++ L +G+A+HHAG LP WK +E+LFQRGL+KVVFATETLAAG+NMPA
Sbjct: 415 EKNKSAVRASMVEPLRRGIASHHAGLLPAWKGLVEKLFQRGLIKVVFATETLAAGVNMPA 474
Query: 544 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 603
R +VLS+LSKR G LTSNE QMAGRAGRRG D GHVV Q+P+EG +E +L+
Sbjct: 475 RCSVLSALSKRDDQGPRLLTSNEFMQMAGRAGRRGFDTVGHVVCCQSPFEGPDEAFELVL 534
Query: 604 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 663
A E L SQF+ SYGMVLNLL GR+L++ + +VE+SFGNY+
Sbjct: 535 APPENLKSQFSISYGMVLNLL-------------------QGRTLDQVKGIVERSFGNYL 575
Query: 664 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRF 723
G + EL ++ + L SE+ D ++ A ++ L E L EKR
Sbjct: 576 GGKARSMRERELLRVNDQIRKLVSEMETLDDDEEA------AEWRRFVKLDERLHEEKRL 629
Query: 724 RTELRRRMELKRFSALKDILK-DFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSS 782
L R++ R +D L+ + E P + D E +L FD D
Sbjct: 630 LKILIRQLAEMRAIETRDQLQFELEQTGAPVILFGDSDDESQNDD----FLQSFDDDDGK 685
Query: 783 KLKNM--ASINDSFALNRLAQSN---GDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTV 837
+ + A+I ++ ++A + G Y + + ALG+D WY +K++
Sbjct: 686 FPRGLITAAIVEAVPAMKIAATASTIGKPYPMGE-----FTALGNDGVWYRLYSDRVKSI 740
Query: 838 YRIGFPNVALAQ-GD-ALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLN 895
+G V L GD +P + SL W + + GGLW + S +T +
Sbjct: 741 S-LGADAVRLESFGDIGVPPASSSL-------RWIRASG---GGLWKADVSKKTKLVANG 789
Query: 896 VPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFT 955
+P ++L++ M E D++E Q+ ++ + +++I + ++ K
Sbjct: 790 IP--TNLND----FEMIVESSDSMEFIDAQKLQIQKTREEINGLKNIATLRRAAKQQKRA 843
Query: 956 EEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIR 1015
E K+K+LK + + KRI++ +GW +FLR+ +++ E A++ +T + GET A +R
Sbjct: 844 ETKLKKLKEKRDGIEKRIKEYSAAGWDDFLRVVDILVECGAIERDTLKLLEFGETCADLR 903
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 1075
GENELWL M + + + +L A LA +L + + + Y S ++ V+
Sbjct: 904 GENELWLGMAMSSPSIENLDAATLAGFAGALCMDN------RPATCYYGASQHLVEVLEE 957
Query: 1076 LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRR 1135
L+ LQ+ +++P L + + +VE+WASG +W ++ D +LD+GD+ARL RR
Sbjct: 958 LEPEMGDLQYLQQSSRIDMPLSLSFEIAALVESWASGTSWDQIRRDTSLDEGDIARLFRR 1017
Query: 1136 TIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELA 1173
T +LLAQIP+ + + L+ A A++V++RPPIS+L+
Sbjct: 1018 TAELLAQIPRTAHLPESLKATAKKANDVVNRPPISDLS 1055
>gi|332707434|ref|ZP_08427483.1| Superfamily II RNA helicase [Moorea producens 3L]
gi|332353785|gb|EGJ33276.1| Superfamily II RNA helicase [Moorea producens 3L]
Length = 920
Score = 623 bits (1606), Expect = e-175, Method: Compositional matrix adjust.
Identities = 380/1056 (35%), Positives = 575/1056 (54%), Gaps = 155/1056 (14%)
Query: 132 VEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIA 191
+EK C + +D+D +++ F +D+FQ+ +IEA SVVV APT SGKTLI
Sbjct: 1 MEKPCVNI---ATSSVDLDP-NNLFPFELDEFQKQAIEALNHSQSVVVCAPTGSGKTLIG 56
Query: 192 EAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTT 251
E ++ R+FYTTPLKALSNQK R+FR FG + VGL+TGDS++NREA +L+MTT
Sbjct: 57 EYTIYRALSQGGRVFYTTPLKALSNQKLRDFRAKFGADKVGLVTGDSSVNREASVLVMTT 116
Query: 252 EILRNMLYQS-VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 310
EI RNMLY + +G V + + V+ ++LDE HY++D RGTVWEE IIYCP ++QI+ L
Sbjct: 117 EIFRNMLYGTPIGQVGAS--MLGVEAVILDECHYMNDRQRGTVWEESIIYCPPDIQIVAL 174
Query: 311 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 370
SATVAN+D+L W+ Q+HG T+LI S RPVPL +YF+ ++ LL++ +N L
Sbjct: 175 SATVANSDQLTDWLNQVHGSTQLIYSDFRPVPLEFYFAHPKGIVSLLNDDQTKINNSLK- 233
Query: 371 NYLQLSTSEVKPYKDGGSRRRNSR-KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 429
+RR S+ KH R + P +
Sbjct: 234 -----------------TRRPKSKDKHG-------------------------RPEGPSI 251
Query: 430 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDA 489
+ L+ R+MLPAI+FIF+RRGCD AV + +L++E E + ++ + F P+A
Sbjct: 252 SSVVSKLKKREMLPAIYFIFSRRGCDKAVDEMGPISLVNEQEAARLKKRIDEFITKNPEA 311
Query: 490 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
R I L +G+AAHHAG LP WK +EELFQ+GLVKVVFATETLAAGINMPART V+S
Sbjct: 312 ARTKQIDPLYRGIAAHHAGILPAWKGLVEELFQQGLVKVVFATETLAAGINMPARTTVIS 371
Query: 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
SLSKRT G LT++E QMAGRAGRRG+D G+VV VQTP+EGA+E L AG +PL
Sbjct: 372 SLSKRTDRGHRLLTASEFLQMAGRAGRRGMDTNGYVVTVQTPFEGAKEAAYLATAGADPL 431
Query: 610 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVML 669
VSQFT +YGMVLNLL SL +A++LVE+SF Y+ + +
Sbjct: 432 VSQFTPTYGMVLNLL-------------------QTHSLPQAKELVERSFAQYLATLYLK 472
Query: 670 AAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRR 729
+ + ++ E + +++ + A + L+E LK E+R +L+
Sbjct: 473 PQQQAITELTAELTRIDFQLAPVDV----------AVMEGYQKLKEHLKVERRILKDLQH 522
Query: 730 RMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMAS 789
+ E+ A+ +L+ E+G + +L ++ V VPAV + K
Sbjct: 523 QAEVSVSKAVSQVLQQVESGAILYLKGKHVP---VSSPVPAVLVSK-------------- 565
Query: 790 INDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVA--- 846
Q + Y V L + N WY T + + GFP VA
Sbjct: 566 -----------QKGSGQF-------PYLVCLSAANRWYVATTADVMGLD--GFPEVADDQ 605
Query: 847 LAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCME-----------GSLETWSWSLN 895
++ G T S + +++ + D G L +E G+ +T + +
Sbjct: 606 VSNGSTEDYSTGSTQGESSDIITLRYLD--IGTLQPLEGLEIKPGQVKGGNEDTEALANQ 663
Query: 896 VPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFT 955
VP ++ L + EV +EQ+ VA L+ ++ T +++ +K
Sbjct: 664 VPTIAQLWVAPEV--------------REQQGVVADLEGQM-ETHALRQWGNPSQLIKRH 708
Query: 956 EEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIR 1015
++++ + ++R TK + + W EFL + ++ E+ +L+ T + LG+ AA++R
Sbjct: 709 KKRLFLQEQINQRQTK-FREYQAQHWHEFLNLIEILKESGSLEDLTPTV--LGQVAASVR 765
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 1075
GENELWLA+ + + L DL P QLAA C+++V+E + W N Y+PS V+ +
Sbjct: 766 GENELWLALAMLSGELDDLDPHQLAAACSAIVTETPRPDSWTN----YKPSEEVLEALGN 821
Query: 1076 LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRR 1135
L R +LQ ++ V +P + + G++E W+ G +WRE+ + +LD+GD+ R+LRR
Sbjct: 822 LRRIRRQVFQLQRRYHVALPVWSEDRLIGLIEQWSLGKSWRELCGNSSLDEGDVVRILRR 881
Query: 1136 TIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 1171
T+D+L+QIP + + + L+ NA+ A+ ++DR P++E
Sbjct: 882 TLDILSQIPHVLPLPESLKANAIRAAQLLDRFPVNE 917
>gi|427730604|ref|YP_007076841.1| superfamily II RNA helicase [Nostoc sp. PCC 7524]
gi|427366523|gb|AFY49244.1| superfamily II RNA helicase [Nostoc sp. PCC 7524]
Length = 893
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 399/1033 (38%), Positives = 569/1033 (55%), Gaps = 163/1033 (15%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L SI+ F +D+FQ+ +I + G SVVV APT SGKTL+ E A +A +R+FYTTP
Sbjct: 11 DLGSIFPFDLDQFQKDAIASLNAGRSVVVCAPTGSGKTLVGEYAIYRALARGKRVFYTTP 70
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+FRE FG + VGLLTGD++INR+A IL+MTTEI RNMLY + +G V
Sbjct: 71 LKALSNQKLRDFREKFGFDLVGLLTGDASINRDAPILVMTTEIFRNMLYGTPIGQVGI-- 128
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L DV+ +VLDE HY++D RGTVWEE IIYCP+EVQ++ LSATVAN+D+L W+ ++HG
Sbjct: 129 SLVDVEAVVLDECHYMNDRQRGTVWEESIIYCPREVQLVALSATVANSDQLTDWLNRVHG 188
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
T+LI S RPVPL +++ L PLL++ ++ +L+
Sbjct: 189 PTDLIYSDFRPVPLEFHYCNPKGLFPLLNDSKTKISPRLA-------------------- 228
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R RK D N R + P +I TL HL+ RDMLPAI+FIF
Sbjct: 229 NRGKRKQGDRGRNG-------------------RPEAPSLIYTLNHLQQRDMLPAIYFIF 269
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD AV + D L+D E + + F P+A R I L +G+AAHHAG
Sbjct: 270 SRRGCDKAVAEVGDLWLVDNDESQVLRRQIDDFLSRNPEAGRSGQIAPLYRGIAAHHAGI 329
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT +G L ++E Q
Sbjct: 330 LPAWKLLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLSKRTDTGHRLLNASEFLQ 389
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
MAGRAGRRG+D +GHVV VQTP+EGA+E L + +PLVSQFT SYGMVLNLL
Sbjct: 390 MAGRAGRRGMDKQGHVVTVQTPFEGAKEAAYLATSKPDPLVSQFTPSYGMVLNLL----- 444
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
+LEE R+L+E+SFG Y+ + + L EL D L +++
Sbjct: 445 --------------QTHTLEETRELIERSFGQYMAT-LHLRPDYELI------DELKAQL 483
Query: 690 SDDAIDRKSRRLLSEAAYKEMA---NLQEELKAEKRFRTELRRRMELKRFSALKDILKDF 746
++ ID + ++ + E+A L++ LKAE++ L+ + + R +K +L
Sbjct: 484 AE--IDEQ----IASVSEHELAIYEKLRQRLKAERQLLKTLQEQAQEARQEQIKMLLDFA 537
Query: 747 ENGHLPFLCLQYKDSEGVEHSVP--AVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNG 804
G L L L+ K+ + SVP AV +G+ + S
Sbjct: 538 VCGTL--LSLKGKN---IAVSVPITAVLVGQSPTAGQS---------------------- 570
Query: 805 DDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDK 864
SY V LG DN WY + + +Y P V + Q D LP + L+
Sbjct: 571 ----------SYLVCLGQDNRWYVAATEDVVDLY-AELPRVEVPQ-DILPPQ--ELIFKP 616
Query: 865 GEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKE 924
G+ G+ T + + N+P E DE LH+ E E
Sbjct: 617 GQ---------------SCRGNAITDAIAQNIP------EPDESLHLPPE-------VAE 648
Query: 925 QRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEF 984
Q +V ++ ++ ++ V + E+ ++ + L ++EQ W+EF
Sbjct: 649 QLHRVTAVQAQLEANPLYQSGN--VAKIFKRRERYAEIQEELQELEAQVEQQSQRHWEEF 706
Query: 985 LRISNVIHETRALD--INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
L + ++ + LD + TQ LG+ AAAIRGENELWL + L + L +L P LAAV
Sbjct: 707 LNLITILQQFDCLDNLVPTQ----LGQVAAAIRGENELWLGLALASGELNNLDPQHLAAV 762
Query: 1043 CASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQF 1102
A+LV+E + ++ + S + + L + R + L++Q +HGV +P L++++
Sbjct: 763 IAALVTETPR----PDSRVNFNLSPEIDEAWSRLQKIRRAVLKVQYRHGVALPVGLENRY 818
Query: 1103 SGM---VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 1159
G+ VE WA G W E+ + LD+GD+ R+LRRT+DLL+QIP +P++ LQ+NA
Sbjct: 819 IGLIAIVEQWALGTEWVELCENTTLDEGDVVRILRRTLDLLSQIPHVPNLPDALQRNAYR 878
Query: 1160 ASNVMDRPPISEL 1172
A ++DR P++E+
Sbjct: 879 AMQLIDRFPVNEV 891
>gi|354566612|ref|ZP_08985784.1| DSH domain protein [Fischerella sp. JSC-11]
gi|353545628|gb|EHC15079.1| DSH domain protein [Fischerella sp. JSC-11]
Length = 891
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 392/1030 (38%), Positives = 558/1030 (54%), Gaps = 163/1030 (15%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
+S++ F +DKFQ +I + G SVVV APT SGKTL+ E +A +R+FYTTPLK
Sbjct: 13 SSVFPFELDKFQLDAIASLNAGRSVVVCAPTGSGKTLVGEYGIYRALARGKRVFYTTPLK 72
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSESGL 271
ALSNQK R+FRE FG + VGLLTGD++INR+A I++MTTEI RNMLY + +G V L
Sbjct: 73 ALSNQKLRDFREQFGFDAVGLLTGDASINRDAPIVVMTTEIFRNMLYGTPIGQVGI--SL 130
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
DV+ +VLDE HY++D RGTVWEE IIYCP+E+Q+I LSATVAN+++L W+ Q+HG T
Sbjct: 131 TDVEAVVLDECHYMNDRQRGTVWEESIIYCPREIQLIALSATVANSEQLTDWLNQVHGPT 190
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
+LI S RPVPL ++F + PLL++ +N +L +R
Sbjct: 191 DLIYSDFRPVPLEFHFGNLKGVFPLLNDDKTQINPRLL--------------------KR 230
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
+K + N RR + P + L HL+ RDMLPAI+FIF+R
Sbjct: 231 GRKKELEKGKGN------------------RRPEAPSINFILSHLQERDMLPAIYFIFSR 272
Query: 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLP 511
RGCD AV + D L++E E ++ + F P+A R I L +G+AAHHAG LP
Sbjct: 273 RGCDKAVAEVGDMWLVNEQEAQQLRRQIDEFLTRNPEAGRSGHIAPLYRGIAAHHAGILP 332
Query: 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMA 571
+WK +EELFQ+GL+KVVFATETLAAGINMPART V+S++SKRT +G LT++E QMA
Sbjct: 333 VWKVLVEELFQQGLIKVVFATETLAAGINMPARTTVISTISKRTDTGHRMLTASEFLQMA 392
Query: 572 GRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMH 631
GRAGRRG+D GHVV +QTP+EGAE L +PLVS FT SYGMVLNLL +H
Sbjct: 393 GRAGRRGMDKVGHVVTLQTPFEGAEHAAALAIKKPDPLVSHFTPSYGMVLNLLQ----IH 448
Query: 632 LSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDE-LCKIQKETDVLTSEIS 690
+L+EAR+L+E+SFG Y+ +NV L + + + ++Q E + + ++I+
Sbjct: 449 ---------------TLDEARELIERSFGQYL-ANVHLQPRQQYIAQLQAELEQIKTQIA 492
Query: 691 DDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGH 750
+ E+ L++ LK E++ L+ + + R L +L +G
Sbjct: 493 T----------VEESEIASYEKLRQRLKVEQKLLNTLQEQADEGRQDELTMMLSFAVSGT 542
Query: 751 LPFLCLQYKDSEGVEHSVP--AVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYD 808
L LCL+ K + S+P AV +GK +
Sbjct: 543 L--LCLKGKY---LTMSLPITAVLIGKTQGASQT-------------------------- 571
Query: 809 TQDVKPSYYVALGSDNTWYTFTEKWIKTVY----RIGFPNVALAQGDALPRETMSLLLDK 864
Y V LG DN WY T + +Y RI P D LP MSL
Sbjct: 572 ------PYLVCLGRDNRWYVATTADVVNLYAELPRIDVPP------DLLPPAQMSLK--- 616
Query: 865 GEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKE 924
G C G E+ + + +P E +E LHM E E
Sbjct: 617 -------------PGQSC-RGDEESMAIASQIP------EPEESLHMPPE-------VAE 649
Query: 925 QRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEF 984
Q +A L+++I + V T+ + + L+A + L ++EQ W+EF
Sbjct: 650 QLRVIAALREQIEAHPLHQTGN--VGTIFKRKLRAAELEAEIQELQAQVEQQSQRHWEEF 707
Query: 985 LRISNVIHETRALD--INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
L + ++ LD + TQ LG+ AAAIRGENELWL + L + L +L P LAA
Sbjct: 708 LNLIEILQYFECLDNLLPTQ----LGQIAAAIRGENELWLGLALASGELDNLDPHCLAAA 763
Query: 1043 CASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQF 1102
A+LV+E + ++ ++ S V + L R +LQ ++ V +P L+ +
Sbjct: 764 AAALVTETPR----PDSKVRFDLSDQVAEALAKLRGIRRKMFQLQRRYNVALPIWLEFEL 819
Query: 1103 SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASN 1162
+VE WA G+ W E+ + LD+GD+ R+LRRT+DLL+QIP +P + + L++NA+ A
Sbjct: 820 IALVEQWALGMDWVELCDNTTLDEGDVVRILRRTLDLLSQIPHVPYMSESLRRNALRAIQ 879
Query: 1163 VMDRPPISEL 1172
++DR P++E+
Sbjct: 880 LIDRFPVNEV 889
>gi|428302129|ref|YP_007140435.1| DSH domain-containing protein [Calothrix sp. PCC 6303]
gi|428238673|gb|AFZ04463.1| DSH domain protein [Calothrix sp. PCC 6303]
Length = 894
Score = 610 bits (1573), Expect = e-171, Method: Compositional matrix adjust.
Identities = 392/1027 (38%), Positives = 566/1027 (55%), Gaps = 156/1027 (15%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
+I+ F +D+FQ +I + GSSVVV APT SGKTLI E A ++ +R+FYTTPLKA
Sbjct: 14 NIFPFELDQFQLDAIASLNAGSSVVVCAPTGSGKTLIGEYAIYRALSRGKRVFYTTPLKA 73
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSESGLF 272
LSNQK R+FRETFG +NVGLLTGD++INR+A +L+MTTEI RNMLY + +G V L
Sbjct: 74 LSNQKLRDFRETFGQDNVGLLTGDASINRDASVLVMTTEIFRNMLYGTPIGQVGIS--LT 131
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 332
DVD +VLDE HY++D RGTVWEE I+YCP EVQ++ LSATV N+D+L W+ Q+HG T+
Sbjct: 132 DVDAVVLDECHYMNDRQRGTVWEESIVYCPHEVQLVALSATVDNSDQLTDWLNQVHGPTD 191
Query: 333 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
LI S RPVPL +YF L PLL++ H+N +L ++ K K G R RN
Sbjct: 192 LIYSDFRPVPLEFYFGNTKGLFPLLNDSKTHINPRL---------AQRKKRKGDGDRGRN 242
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R A SIN + L HL+ RDMLPAI+FIF+RR
Sbjct: 243 GRPEAP------------------SINYV-----------LSHLQQRDMLPAIYFIFSRR 273
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPI 512
GCD +V + D L++ E ++ + + F PDA R + L +G+AAHHAG LP
Sbjct: 274 GCDKSVADVGDMWLVNPDEAYKLRVQIDDFLTRNPDAGRAGHVGPLYRGIAAHHAGILPA 333
Query: 513 WKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAG 572
WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT +G L ++E QMAG
Sbjct: 334 WKVLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLSKRTDNGHRLLNASEFLQMAG 393
Query: 573 RAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHL 632
RAGRRG+D+RG+VV +QTP+EGA+E L + +PLVSQFT SYGMVLNLL
Sbjct: 394 RAGRRGMDDRGYVVTLQTPFEGAKEASYLATSKPDPLVSQFTPSYGMVLNLL-------- 445
Query: 633 SNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDD 692
+LE+ R+L+E+SFG Y+ + + + L ++Q++ ++I D
Sbjct: 446 -----------QTHTLEQTRELIERSFGQYLANFHLRPQYEYLAELQRQLGETQAQI--D 492
Query: 693 AIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLP 752
A++ +E A E L++ LK E++ L+ + R L +L
Sbjct: 493 AVNE------NELALYE--KLRQRLKVERQLLKTLQEQAVEARQEELGMMLG-------- 536
Query: 753 FLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM-ASINDSFALNRLAQSNGDDYDTQD 811
+V LG K KN+ + + AL + S+G
Sbjct: 537 -------------FAVAGTILGL-------KGKNIPVATPVTAALITKSASSG------- 569
Query: 812 VKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEK 871
+ Y + LGSDN WY T + +Y FP + + + + LP M + K
Sbjct: 570 -QAPYLICLGSDNRWYVATTGDVVELY-AEFPRIDVPE-NLLPPAEMQI----------K 616
Query: 872 LADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVAR 931
S G+LET + + SS+ E + + +++ E +EQ ++V
Sbjct: 617 PGHSR-------RGNLETNA------IASSIPEPEGLSYLAPE-------VREQLSRVTA 656
Query: 932 LKKKIARTEGFKEYKKIVDTVKFTEE-KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNV 990
++ +I E Y+ F ++ L + L ++Q W+EF+ + ++
Sbjct: 657 IQAQI---EAHPLYQSGNAASLFKRRNRVVELTVEIEELEAHVQQQSQRHWEEFVNLIDI 713
Query: 991 IHETRALD--INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVS 1048
+ + L I TQ G+ AAAIRGENELWL + L + + L P QLAA+ A+LV+
Sbjct: 714 LQQFDCLSNLIPTQ----QGQIAAAIRGENELWLGLALSSGEVDALDPQQLAAIVAALVT 769
Query: 1049 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSG---M 1105
E + ++ ++ S V L + R + L++Q +HGV +P L+ ++ +
Sbjct: 770 ETPR----PDSFVRFDLSAEVDEAWGRLQKIRKAVLKVQYRHGVALPVGLEIRYINIISL 825
Query: 1106 VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMD 1165
VE WA G+ W E+ +LD+GD+ R+LRRT+DLL+QIP +P + L +NA A ++D
Sbjct: 826 VEQWALGVEWVELCEHTSLDEGDVVRILRRTLDLLSQIPHVPHLSDALYRNARRAMQLID 885
Query: 1166 RPPISEL 1172
R P++E+
Sbjct: 886 RFPVNEV 892
>gi|220909112|ref|YP_002484423.1| DSH domain-containing protein [Cyanothece sp. PCC 7425]
gi|219865723|gb|ACL46062.1| DSH domain protein [Cyanothece sp. PCC 7425]
Length = 889
Score = 610 bits (1572), Expect = e-171, Method: Compositional matrix adjust.
Identities = 367/1027 (35%), Positives = 539/1027 (52%), Gaps = 152/1027 (14%)
Query: 147 IDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIF 206
+++ ++++ F +D FQ+ +I A SVVV APT SGKTLI E A ++ QRR+F
Sbjct: 10 LNLPNFSTLFPFPLDTFQQEAIAALEADQSVVVCAPTGSGKTLIGEYAIYRALSRQRRVF 69
Query: 207 YTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMV 265
YTTPLKALSNQK R+FR+ FG VGLLTGD +INR+A IL+MTTEI RNMLY + +G V
Sbjct: 70 YTTPLKALSNQKLRDFRQQFGAEQVGLLTGDVSINRDAPILVMTTEIFRNMLYGTPIGEV 129
Query: 266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325
+ L V+V+VLDE HY++D RGTVWEE IIYCP +Q++ LSAT+AN+ +L WI
Sbjct: 130 G--TSLAGVEVVVLDECHYMNDRQRGTVWEESIIYCPAAIQLVALSATIANSQQLTDWID 187
Query: 326 QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
Q+HG T LI S +RPVPL ++F T L PLL+ + +N +LS +
Sbjct: 188 QVHGPTRLIYSEQRPVPLRYHFCTSKGLFPLLNRERTKLNAQLS--------------QQ 233
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
G + R S + D +P + L L+ RDMLPAI
Sbjct: 234 RGRQGRQSHRSED---------------------------IPNLTFVLSQLKERDMLPAI 266
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 505
+FIF+RRGCD A+ + LL+ E ++++ + F +PD P +K L +G+AAH
Sbjct: 267 YFIFSRRGCDQAIAEVSSIQLLNPAETLQLQIQIDHFLQQHPDQAASPYVKPLYQGIAAH 326
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP+WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLSKRT SG LT +
Sbjct: 327 HAGILPLWKGLVEELFQQGLIKVVFATETLAAGINMPARTTVISSLSKRTDSGHRLLTPS 386
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E QMAGRAGRRG+D GHVV QTP+EG E L AG +PL+SQF+ SYGMVLNLL
Sbjct: 387 EFLQMAGRAGRRGMDQLGHVVTQQTPFEGGREAAYLATAGADPLISQFSPSYGMVLNLL- 445
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 685
+LE+A++LVE+SFG Y+ + + + + + E + +
Sbjct: 446 ------------------QTHTLEQAKELVERSFGQYLSTLHLAPQRQAIADLTAEFNQV 487
Query: 686 TSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKD 745
++++ ++ A K+ L+E+++ E+R L+ + E R L
Sbjct: 488 QAKLATVDLN----------ALKQYQKLREQVREEERLLKILQHQAEETRRKQLA----- 532
Query: 746 FENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGD 805
L + Y + PAV G + S+ + + + + F
Sbjct: 533 --------LAIVYAPPGTLLSLKPAV--GSPRTCLSAVVVSQVASSGQF----------- 571
Query: 806 DYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKG 865
Y LG DN WY + + ++ ALP + L
Sbjct: 572 ---------PYLGCLGQDNHWYVVSLDQVVDIH------------AALPLSRFAALPFPA 610
Query: 866 EMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQ 925
E L K + G+ ET + + +P VE E
Sbjct: 611 E-LPHKPGSRQ-------AGTAETTAIAAQIPDCE------------------VEVPAEV 644
Query: 926 RTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFL 985
+ RL+ A+ + ++ +++ RL+ + + +++ Q W+EFL
Sbjct: 645 LAQQGRLEAIQAKLTSHPLHLANPALLQRLQQRATRLQDQIRSRQEKLNQQSHHHWEEFL 704
Query: 986 RISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCAS 1045
+ ++ RAL+ PLG+TAAA+RG+NELWL + + + L L P AA CA+
Sbjct: 705 CLLKILQTFRALEDLAPT--PLGQTAAALRGDNELWLGLAIASGELDGLDPHHFAAACAA 762
Query: 1046 LVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGM 1105
LV+E + ++ + YEP+ V + L R + Q ++ V +P L+ + G+
Sbjct: 763 LVTETPR----SDSYTSYEPADAVDAALMALRPLRRQLFQAQRRYQVVLPVWLEPELVGL 818
Query: 1106 VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMD 1165
VE WA G W E+ LD+GD+ RLLRRT+D L+Q+P P + L++NA+ A ++D
Sbjct: 819 VEQWALGTEWSELCTHTNLDEGDIVRLLRRTLDFLSQLPHAPQISPELRQNALRAHQLLD 878
Query: 1166 RPPISEL 1172
R P++++
Sbjct: 879 RFPVNDI 885
>gi|186682114|ref|YP_001865310.1| DSH domain-containing protein [Nostoc punctiforme PCC 73102]
gi|186464566|gb|ACC80367.1| DSH domain protein [Nostoc punctiforme PCC 73102]
Length = 891
Score = 607 bits (1565), Expect = e-170, Method: Compositional matrix adjust.
Identities = 394/1026 (38%), Positives = 556/1026 (54%), Gaps = 151/1026 (14%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L +I+ F +D+FQ+ +I + G SVVV APT SGKTL+ E A ++ +R+FYTTP
Sbjct: 11 DLGAIFPFDLDQFQKDAIASLNAGRSVVVCAPTGSGKTLVGEYAIYRALSRGKRVFYTTP 70
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+FRE FG + VGLLTGD++I+R+A IL+MTTEI RNMLY + +G V
Sbjct: 71 LKALSNQKLRDFREKFGFDQVGLLTGDASIHRDAPILVMTTEIFRNMLYGTPIGQVG--I 128
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L DV+ ++LDE HY++D RGTVWEE IIYCP+EVQ+ LSATVAN+D+L W+ ++HG
Sbjct: 129 SLVDVEAVILDECHYMNDRQRGTVWEESIIYCPREVQLAALSATVANSDQLTDWLNRVHG 188
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
T+LI S RPVPL ++F L PLL++ +N +L ++ K GG R
Sbjct: 189 PTDLIYSDFRPVPLEFHFCNPKGLFPLLNDSKTKINPRL-----------LQKKKRGGER 237
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R R + P +I TL L RDMLPAI+FIF
Sbjct: 238 DRGRSG---------------------------RPEAPGIIYTLSQLEQRDMLPAIYFIF 270
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD AV + D L++ E + + F P+A R I L +G+AAHHAG
Sbjct: 271 SRRGCDKAVAEVGDLWLVNNEESQILRQQIDDFLARNPEAGRSGQIAPLYRGIAAHHAGI 330
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK+ +EELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT +G L ++E Q
Sbjct: 331 LPAWKALVEELFQQGLIKVVFATETLAAGINMPARTTVISTLSKRTDTGHRLLNASEFLQ 390
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
MAGRAGRRG+D +GHVV VQTP+EGA+E L + +PLVSQFT SYGMVLNLL
Sbjct: 391 MAGRAGRRGMDKQGHVVTVQTPFEGAKEAAYLGTSKPDPLVSQFTPSYGMVLNLL----- 445
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
+LE+ R+L+E+SFG Y+ + + DE+ +++K+ L +I
Sbjct: 446 --------------QTHTLEQTRELIERSFGQYMATLHLRPEYDEIAELEKQLAQLHEQI 491
Query: 690 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 749
+ A+D +E A E L++ LK E++ L+ + + R L +L +G
Sbjct: 492 A--AVDE------NELAIYE--KLRQRLKVERQILKTLQEQAQEDRQEELGMMLDFAVSG 541
Query: 750 HLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDT 809
L L L+ K+ V V AV +GK S G
Sbjct: 542 TL--LSLKGKNIT-VSSPVTAVLVGK--------------------------SPGSG--- 569
Query: 810 QDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLW 869
+ Y V LG DN WY T + +Y P + ++ D LP M L
Sbjct: 570 ---QAPYLVCLGHDNRWYVATTGDVVDLY-AELPRIEVSP-DVLPPPEMPL--------- 615
Query: 870 EKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKV 929
K S G+ ET++ + +P E LH++ E EQ ++
Sbjct: 616 -KPGQSR-------RGNEETFAIATRIP------NPIESLHLAPE-------VAEQLSRT 654
Query: 930 ARLKKKIARTEGFKEYKKIVDTVKFTEE-KIKRLKARSKRLTKRIEQIEPSGWKEFLRIS 988
A +++++ E ++ F K L+A ++L ++EQ W+EFL +
Sbjct: 655 AAVQEQL---EAHPLHQSGNAATLFKRRAKYVELEAELEQLQGQVEQQSQRHWEEFLNLI 711
Query: 989 NVIHETRALD--INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 1046
++ ALD + TQ LG AAAIRGENELWL +V + L +L P LAA A L
Sbjct: 712 LILQHFGALDNLVPTQ----LGRIAAAIRGENELWLGLVFASGELDNLDPHHLAAAAAGL 767
Query: 1047 VSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMV 1106
V E + ++ +E S V + L R +LQ ++ V +P L+ + +V
Sbjct: 768 VMETPR----PDSKVNFELSNEVAEALAKLRGIRRQMFQLQRRYNVALPIWLEFELIAIV 823
Query: 1107 EAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
E WA G+ W E+ + LD+GD+ R+LRRT+DLL+QIP +P + Q+NA A ++DR
Sbjct: 824 EQWALGMEWTELCENTTLDEGDVVRILRRTLDLLSQIPHVPHLPDSFQRNAYRAMQLIDR 883
Query: 1167 PPISEL 1172
P++E+
Sbjct: 884 FPVNEV 889
>gi|443479093|ref|ZP_21068748.1| DSH domain protein [Pseudanabaena biceps PCC 7429]
gi|443015488|gb|ELS30416.1| DSH domain protein [Pseudanabaena biceps PCC 7429]
Length = 874
Score = 606 bits (1562), Expect = e-170, Method: Compositional matrix adjust.
Identities = 386/1028 (37%), Positives = 559/1028 (54%), Gaps = 173/1028 (16%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+Y F +D FQ +I A G SVVV APT SGKTLI E A A +A +RR+FYTTPLKAL
Sbjct: 9 LYPFELDPFQLQAIAALQAGKSVVVCAPTGSGKTLIGEYAIHAALAGERRVFYTTPLKAL 68
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSESGLFD 273
SNQK R+FR+ FGD+NVGLLTGD+++NR+A IL+MTTEI RNMLY + +G V + L D
Sbjct: 69 SNQKLRDFRQQFGDDNVGLLTGDTSVNRDAPILVMTTEIFRNMLYGTPIGEVG--TSLTD 126
Query: 274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 333
V+V+VLDE HY++D RGTVWEE I+YCP EVQ++ LSATVAN+ +L WI ++HG TEL
Sbjct: 127 VEVVVLDECHYMNDRQRGTVWEESIVYCPAEVQLVALSATVANSQQLTDWIHKVHGDTEL 186
Query: 334 ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 393
I S RPVPL F + PLLD + +N +L KP
Sbjct: 187 IYSDFRPVPLEHSFCSSKGFFPLLDSSSQKINPRL------------KPL---------- 224
Query: 394 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453
+N ++ +H++ VP + + HLR RDMLPAI+FIF+RRG
Sbjct: 225 -------TNKPLSKEERHKI------------VPSIGAVISHLRQRDMLPAIYFIFSRRG 265
Query: 454 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIW 513
CD +V L + +L++ E ++ + F P+ + I L +G+AAHHAG LP W
Sbjct: 266 CDKSVTDLGNVSLVNAEESLRLKPQIDAFIAANPEIGKPAHIDALYRGIAAHHAGILPAW 325
Query: 514 KSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGR 573
K F+EELFQ+GL+KVVFATETLAAGINMPART V+SS+SKRT G L ++E QMAGR
Sbjct: 326 KGFVEELFQQGLIKVVFATETLAAGINMPARTTVISSISKRTDRGHRLLNASEFLQMAGR 385
Query: 574 AGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLS 633
AGRRG+D G+VV VQTP+EGA+E L + +PLVSQF SYGMV+NLL
Sbjct: 386 AGRRGMDEVGYVVTVQTPFEGAKEAANLATSTADPLVSQFAPSYGMVMNLL--------- 436
Query: 634 NESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDA 693
SLE+AR LVE+SFG Y+ + L + ++ L ++++
Sbjct: 437 ----------QTHSLEQARDLVERSFGQYLADLNLAPQIQNLESVMEQIAKLEKDLAN-- 484
Query: 694 IDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPF 753
ID K + + L++ L+ EKR L ++ E R + L + P+
Sbjct: 485 IDLKQLEIYDK--------LRDRLREEKRLLKMLAQQSEEMRLNDLA--------SYAPY 528
Query: 754 LC----LQYKDSEG-VEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYD 808
L L + ++G + H+V A + Q +G
Sbjct: 529 LLSGSPLTIRTNKGIIVHTVLAAKV---------------------------QGSG---- 557
Query: 809 TQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEML 868
+ ++V LGSDN WYT +G+ ++ D LLLD G++
Sbjct: 558 ----QFPWFVCLGSDNRWYT-----------LGYKDIVQVGTD--------LLLD-GDID 593
Query: 869 WEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTK 928
+ G +EG + + + N+ L + + EVL +Q+ +
Sbjct: 594 YPSKLPLRPG--QSIEGDEASLAIAQNIKPLPESALAPEVL--------------KQQAR 637
Query: 929 VARLKKKIAR--TEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLR 986
V L+ ++ R + I V E+ +++ + K + +R ++ W+EF+
Sbjct: 638 VIALESEMNRHPVSKMSDRGAIFKKVNRLEQLQRQIDFQQKVVNERRQR----HWQEFM- 692
Query: 987 ISNVIHETRALDINTQVIFPL--GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCA 1044
+++H +A D Q P G+ AA+RGENELWLA+ L + + +L P LA VCA
Sbjct: 693 --SLVHILQAYDC-LQETQPTDRGKVVAALRGENELWLALCLMSGEMDNLSPHHLATVCA 749
Query: 1045 SLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSG 1104
++VSE + W + S TV + ++ L E R +++Q +H V+IP LD + +G
Sbjct: 750 AIVSENSRPDNWIK----FGLSPTVEDALDGLREVRRQLMQVQRRHLVDIPAWLDYELTG 805
Query: 1105 MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVM 1164
+VE WA G+ W E+ + LD+GD+ RL+RRTIDLL QIP +P++ + + A A+ ++
Sbjct: 806 LVEQWALGMEWSELCQNTNLDEGDIVRLMRRTIDLLYQIPHVPNLPIHVYQAAKQAAQLI 865
Query: 1165 DRPPISEL 1172
DR P++E+
Sbjct: 866 DRFPVNEV 873
>gi|75909112|ref|YP_323408.1| type III restriction enzyme, res subunit [Anabaena variabilis ATCC
29413]
gi|75702837|gb|ABA22513.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC
29413]
Length = 893
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 386/1028 (37%), Positives = 563/1028 (54%), Gaps = 153/1028 (14%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L I+ F +D+FQ+ +I + G SVVV APT SGKTL+ E A +A +R+FYTTP
Sbjct: 11 DLGLIFPFDLDQFQKDAIASLNAGRSVVVCAPTGSGKTLVGEYAIYRALARGKRVFYTTP 70
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+FRE FG VGLLTGD++INR+A IL+MTTEI RNMLY + +G V
Sbjct: 71 LKALSNQKLRDFREKFGFEQVGLLTGDASINRDAPILVMTTEIFRNMLYGTPIGQVGIS- 129
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L DV+ +VLDE HY++D RGTVWEE IIYCP+ VQ++ LSATVAN+D+L W+ ++HG
Sbjct: 130 -LVDVEAVVLDECHYMNDRQRGTVWEESIIYCPRGVQLVALSATVANSDQLTDWLSRVHG 188
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
T+LI S RPVPL +++ L PLL++ +N +L+
Sbjct: 189 PTDLIYSDFRPVPLEFHYCNPKGLFPLLNDSKTKINPRLA-------------------- 228
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R ++ D N R + P +I TL L+ RDMLPAI+FIF
Sbjct: 229 NRGKKRQGDRGKNG-------------------RPEAPSLIYTLNQLQQRDMLPAIYFIF 269
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD AV + D L++ E + + F P+A R I L +GVAAHHAG
Sbjct: 270 SRRGCDKAVAEVGDLWLVNNEESQILRRQIDDFLARNPEAGRSGQIAPLYRGVAAHHAGI 329
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT +G L ++E Q
Sbjct: 330 LPAWKVLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLSKRTDTGHRLLNASEFLQ 389
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
MAGRAGRRG+D +GHVV VQTP+EG++E L + +PLVSQFT SYGMVLNLL
Sbjct: 390 MAGRAGRRGMDKQGHVVTVQTPFEGSKEAAYLATSKPDPLVSQFTPSYGMVLNLL----- 444
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
+++EA++L+E+SFG Y+ + + +E+ ++ E L +I
Sbjct: 445 --------------QTHTIDEAKELIERSFGQYMATLHLRPDYEEIAALEGELAKLQEQI 490
Query: 690 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 749
+A+D +S L+ E L++ LK E++ L+ + + +R +K +L +G
Sbjct: 491 --NAVD-ESDILIYE-------KLRQRLKVERQLLKTLQEQAQEERQEQIKMLLDFAISG 540
Query: 750 HLPFLCLQYKDSEGVEHSVP--AVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDY 807
L L L+ K+ + S P AV +GK S
Sbjct: 541 TL--LSLKGKN---ITASTPITAVLVGKTSGSTQS------------------------- 570
Query: 808 DTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEM 867
+ V LG DN WY + + +Y P V + D LP L+L G+
Sbjct: 571 -------ACLVCLGQDNRWYVASTADVVDLY-AELPRVDVPP-DILPPP--ELILKPGQ- 618
Query: 868 LWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRT 927
G+ ET + + ++P + + LH+S E EQ +
Sbjct: 619 --------------SSRGAKETMAIAQSIP------DPQQSLHLSPE-------VAEQLS 651
Query: 928 KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRI 987
+ A ++ ++ + V TV + L+A + + ++EQ W+EFL +
Sbjct: 652 RTAAIQAQLEANPLHQSGN--VSTVFKARARYVELEAELEEIQAQVEQQSQRYWEEFLNL 709
Query: 988 SNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV 1047
++ + LD V LG+ AAAIRGENELWL + L + L +L P LAA A+LV
Sbjct: 710 ITILQQFDCLD--NLVPTALGQIAAAIRGENELWLGLALASGELNNLDPHHLAATIAALV 767
Query: 1048 SEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSG--- 1104
+E + ++ + S + + + L + R + L++Q +HGV +P L++++ G
Sbjct: 768 TETPR----PDSRVNFNLSPEIDDAWSRLQKTRRAVLKVQYRHGVALPVGLENRYIGLIA 823
Query: 1105 MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVM 1164
+VE WA G+ W E+ + LD+GD+ R+LRR++DLL+QIP +P++ LQ+NA A ++
Sbjct: 824 LVEQWALGIEWVELCQNTTLDEGDVVRILRRSLDLLSQIPHVPNLPDVLQRNAYRAMQLI 883
Query: 1165 DRPPISEL 1172
DR P++E+
Sbjct: 884 DRFPVNEV 891
>gi|428778819|ref|YP_007170605.1| superfamily II RNA helicase [Dactylococcopsis salina PCC 8305]
gi|428693098|gb|AFZ49248.1| superfamily II RNA helicase [Dactylococcopsis salina PCC 8305]
Length = 884
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 376/1024 (36%), Positives = 546/1024 (53%), Gaps = 151/1024 (14%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L +++ F +D FQ +I A SVVVS PT SGKTL+ E A +A +R+FYTTP
Sbjct: 9 DLKTLFPFELDNFQVRAITALDAKKSVVVSVPTGSGKTLVGEYAIHRALAKGKRVFYTTP 68
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLY-QSVGMVSSES 269
LKALSNQK R+F+ETFG+ VGLLTGD ++NR+A +++MTTEI RNMLY S+G V +
Sbjct: 69 LKALSNQKLRDFQETFGEEQVGLLTGDVSVNRDAGVVVMTTEIFRNMLYGTSIGEVG--T 126
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L +V+ +VLDE HY++D +RGTVWEE IIYCPK +Q++ LSAT+ANA +L WI +IHG
Sbjct: 127 SLENVEAVVLDECHYMNDPNRGTVWEESIIYCPKSIQLVALSATIANAGQLTDWINEIHG 186
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
TELI S RPVPL +YFST L PLL+E+ MN +L KP + G
Sbjct: 187 PTELIKSDFRPVPLEFYFSTLKGLFPLLNEQKTKMNSRL------------KPKQKGRKI 234
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R I +S P + + L +R++LPAI+FIF
Sbjct: 235 R------------------------------ISKSDCPTIDLVVEQLATRELLPAIYFIF 264
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD +VQ L +L+ E ++++ L+RF +P+ R I+ L +GVA+HHAG
Sbjct: 265 SRRGCDQSVQQLNRLSLVTPEEKAQIQEHLQRFLAQHPEGARSGQIEPLKRGVASHHAGV 324
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK +EELF RGLVKVVFATETLAAG+NMPART V+SSLSKRT G L ++E Q
Sbjct: 325 LPAWKGLVEELFTRGLVKVVFATETLAAGVNMPARTTVISSLSKRTDQGHRLLRASEFLQ 384
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
M+GRAGRRG+D RG+VV VQT +EGA+E L +PLVSQFT +YGMVLNLL
Sbjct: 385 MSGRAGRRGMDQRGNVVCVQTRFEGAKEAAYLATRESDPLVSQFTPTYGMVLNLL----- 439
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
++++EA+ L+++SF Y+ + ++ + + ++ +E + +I
Sbjct: 440 --------------QRQTIQEAKSLLQRSFAQYLANLKLIPEQKAIAQLTQEIARIDVQI 485
Query: 690 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 749
+ + A + + LQ LK EKR L ++ + R AL + +G
Sbjct: 486 AP----------IPRAYFNQYEKLQAHLKEEKRILKYLDKQAQRDRTPALSAAISQLRSG 535
Query: 750 HLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDT 809
L FL +Y V +PAV L Q+ G +
Sbjct: 536 DLLFLKGKYVT---VSSPLPAV---------------------------LVQTTGSPGQS 565
Query: 810 QDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPR-ETMSLLLDKGEML 868
S + L +DN WY TE+ + + + P + D P E KG+ +
Sbjct: 566 -----SLLICLAADNRWYVATERDVSAIGEVLLPESYFSSIDLPPDLEIKPGKRRKGDEI 620
Query: 869 WEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTK 928
++A ME E + P +++ E + + H +Q +
Sbjct: 621 TAEIAQR-------ME---EVEIPDTDAPEVAAQKEKIKDIQQRMSSHPL-----QQWGQ 665
Query: 929 VARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRIS 988
+L K +R + EE+++R +A ++ + + W+EFL I
Sbjct: 666 PKQLLKTYSRRQQL-------------EEELERHQANTR-------ENQSQHWREFLDIC 705
Query: 989 NVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVS 1048
V+ AL+ LG+TAAAIRG+NELWL + LR+ +L PA LAA C++L++
Sbjct: 706 EVLETFGALEKYQPT--SLGQTAAAIRGDNELWLGLALRSGHFDELSPAYLAAACSALIT 763
Query: 1049 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEA 1108
E + ++ S + P VIN ++ L R ++Q ++ V IP L+ G+VE
Sbjct: 764 ETPR----PDSESDFPPPMPVINALSELRGIRRELFQVQRRNRVAIPLWLEPDLIGLVEQ 819
Query: 1109 WASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPP 1168
W G+ W+++ +LD+GDL R+LRR+ D L+QIP +P + L NA A M+R P
Sbjct: 820 WVEGIEWQDLCDATSLDEGDLVRILRRSRDFLSQIPHVPYLPNVLAMNARLAVEQMERFP 879
Query: 1169 ISEL 1172
+ E
Sbjct: 880 VQEF 883
>gi|428318931|ref|YP_007116813.1| DSH domain protein [Oscillatoria nigro-viridis PCC 7112]
gi|428242611|gb|AFZ08397.1| DSH domain protein [Oscillatoria nigro-viridis PCC 7112]
Length = 912
Score = 603 bits (1555), Expect = e-169, Method: Compositional matrix adjust.
Identities = 395/1045 (37%), Positives = 557/1045 (53%), Gaps = 167/1045 (15%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L +I+ F +D FQR +I A G SVVV APT SGKTLI E A ++ RR+FYTTP
Sbjct: 12 DLKTIFPFELDNFQREAIAALDAGKSVVVCAPTGSGKTLIGEYAIHQALSRGRRVFYTTP 71
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+FR FGD+NVGLLTGD ++NR+A IL+MTTEI RNMLY + +G V +
Sbjct: 72 LKALSNQKLRDFRSQFGDDNVGLLTGDISVNRDAPILVMTTEIFRNMLYGTPIGEVGT-- 129
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L V+ +VLDE HY++D RGTVWEE IIYC E+Q++ LSATVAN+++L WI ++HG
Sbjct: 130 SLTGVETVVLDECHYMNDRQRGTVWEESIIYCSSEIQLLALSATVANSEQLTDWINKVHG 189
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
TEL+ S RPVPL ++F+ + + PLLDE GK N +L
Sbjct: 190 PTELVYSDFRPVPLQFHFANQKGIFPLLDETGKRANVRL--------------------- 228
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
V Q ++ + SI P + D L L RDMLPAI+FIF
Sbjct: 229 ---------------VPKKKQQKVERGSI------PTPSLTDVLARLDDRDMLPAIYFIF 267
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD AV + + +L++E E +E++ + F P+A R + LLKG+AAHHAG
Sbjct: 268 SRRGCDQAVAEVGNFSLVNEAETAELKRIIDDFLQRNPEAERFGQKEALLKGIAAHHAGI 327
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK +EELF RGL+KVVFATETLAAGINMPART V+S+LSKRT G L ++E Q
Sbjct: 328 LPAWKGLVEELFGRGLIKVVFATETLAAGINMPARTTVISTLSKRTDKGHRLLNASEFLQ 387
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
MAGRAGRRG+D GHVV VQT +EGA+E L A +PL SQFT SYGMVLNLL
Sbjct: 388 MAGRAGRRGMDKLGHVVAVQTRFEGAKEASYLATAKADPLASQFTPSYGMVLNLL----- 442
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
+L+EA++LVE+SFG Y+ + + + EL ++Q E VL +
Sbjct: 443 --------------QTHTLDEAQELVERSFGQYLSTLYLQPQQAELDRLQTELAVLEESL 488
Query: 690 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 749
+ L E A+ E LQ LK EKR L ++ E RF + + G
Sbjct: 489 AGGG---NVSTLEKELAHYE--KLQARLKEEKRLLKTLLQQAEEARFKEMSVAVAFAVLG 543
Query: 750 HLPFLCLQYKDSEGVEHS--VPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDY 807
+ L ++ + H+ VPAV + K + S + N+
Sbjct: 544 TVLSLKGKHVPTAKRSHTTPVPAVLVAK--TPGSGQAPNL-------------------- 581
Query: 808 DTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDAL-PRETMSLLLDKGE 866
V LG DN WY + T++ P +++A D L P M L L +
Sbjct: 582 ----------VCLGKDNRWYVVAISDVATLH-AELPRLSVA--DTLNPPPEMPLRLGQ-- 626
Query: 867 MLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQR 926
C G+ ET S + ++P L + S E + EQ+
Sbjct: 627 ---------------CRLGTEETASIAGSIPQLPTPEPSPEAI--------------EQQ 657
Query: 927 TKVARLKKKIARTEGFKEYKKIVD-----TVKFTEEKIKRLKARSKRLTKRIEQIEPSGW 981
K+A L+ K+ E +++ T+ + + + LK ++ + +E+ W
Sbjct: 658 HKIAALEAKL-------EIHPVLEWGNPGTLLKRQRRREELKKEIRKSEQELEKQRARYW 710
Query: 982 KEFLRISNVI------------HETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 1029
++FL + +++ H R + V LG+ AAIRG+NELWL + L +
Sbjct: 711 EQFLNLIDILLNFGCLERVVSAHGNRDDSSDRLVPTILGQACAAIRGDNELWLGLSLMSA 770
Query: 1030 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH-RSSFLELQE 1088
+L P LAA CA+LV+E + W + Y S V+ ++ L + R ++Q
Sbjct: 771 EFDELDPHHLAAACAALVTEVSRPDSWTH----YSLSPEVLAPLDNLQKGLRRRLFQVQY 826
Query: 1089 KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPD 1148
+H IP L+ + +VE WA G+ W E++ +LD+GD+ R+LRRT+D L+QIP +P
Sbjct: 827 RHEAAIPIWLERELVTLVEQWALGVEWLELISHTSLDEGDVVRILRRTLDFLSQIPHVPH 886
Query: 1149 VDQRLQKNAVDASNVMDRPPISELA 1173
V L++NA A ++DR P++E A
Sbjct: 887 VSDSLRRNACRAMQLIDRFPVNEAA 911
>gi|17227985|ref|NP_484533.1| hypothetical protein alr0489 [Nostoc sp. PCC 7120]
gi|17129834|dbj|BAB72447.1| alr0489 [Nostoc sp. PCC 7120]
Length = 893
Score = 603 bits (1554), Expect = e-169, Method: Compositional matrix adjust.
Identities = 379/1026 (36%), Positives = 555/1026 (54%), Gaps = 149/1026 (14%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L I+ F +D+FQ+ +I + G SVVV APT SGKTL+ E A + +R+FYTTP
Sbjct: 11 DLGLIFPFDLDQFQKDAIASLNAGRSVVVCAPTGSGKTLVGEYAIYRALTRGKRVFYTTP 70
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+FRE FG VGLLTGD++INR+A IL+MTTEI RNMLY + +G V
Sbjct: 71 LKALSNQKLRDFREKFGFEQVGLLTGDASINRDAPILVMTTEIFRNMLYGTPIGQVG--I 128
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L DV+ +VLDE HY++D RGTVWEE IIYCP+ VQ++ LSATVAN+D+L W+ ++HG
Sbjct: 129 SLVDVEAVVLDECHYMNDRQRGTVWEESIIYCPRGVQLVALSATVANSDQLTDWLSRVHG 188
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
T+LI S RPVPL +++ L PLL++ +N +L+
Sbjct: 189 PTDLIYSDFRPVPLEFHYCNPKGLFPLLNDSKTKINPRLA-------------------- 228
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R ++ D N R + P +I TL HL+ RDMLPAI+FIF
Sbjct: 229 NRGKKRQGDRGKNG-------------------RPEAPSLIYTLNHLQQRDMLPAIYFIF 269
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD AV + D L++ E + + F P+A R I L +GVAAHHAG
Sbjct: 270 SRRGCDKAVAEVGDLWLVNNEESQILRRQIDDFLARNPEAGRSGQIAPLYRGVAAHHAGI 329
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT +G L ++E Q
Sbjct: 330 LPAWKVLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLSKRTDTGHRLLNASEFLQ 389
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
MAGRAGRRG+D +GHVV VQTP+EG++E L + +PLVSQFT SYGMVLNLL
Sbjct: 390 MAGRAGRRGMDKQGHVVTVQTPFEGSKEAAYLATSKPDPLVSQFTPSYGMVLNLL----- 444
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
+++EA++L+E+SFG Y+ + + +E+ ++ E L +I
Sbjct: 445 --------------QTHTIDEAKELIERSFGQYMATLHLRPDYEEIAALEGELAKLQEQI 490
Query: 690 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 749
+A+D + + L++ LK E++ L+ + + +R +K +L DF
Sbjct: 491 --NAVDENDILIYEK--------LRQRLKVERQLLKTLQEQAQEERQEQIK-MLLDF--- 536
Query: 750 HLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDT 809
LG SL K I + +++G
Sbjct: 537 ---------------------AVLGTLLSLKGQNFKVSTPITAVL----VGKTSG----- 566
Query: 810 QDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLW 869
+ + V LG DN WY + +Y P V + D LP L+L G+
Sbjct: 567 -STQSACLVCLGQDNRWYVAATADVVDLY-AELPRVDVPP-DILPPP--ELMLKPGQ--- 618
Query: 870 EKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKV 929
G+ ET + + ++P + + LH+S E EQ ++
Sbjct: 619 ------------SSRGAKETMAIAQSIP------DPQQSLHLSPE-------VAEQLSRT 653
Query: 930 ARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISN 989
A ++ ++ + V V + L+A + + ++EQ W+EFL +
Sbjct: 654 AAIQAQLEANPLHQSGN--VSMVFKARARYVELEAELEEIQAQVEQQSQRYWEEFLNLIT 711
Query: 990 VIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
++ + LD V LG+ AAAIRGENELWL + L + L +L P LAA A+LV+E
Sbjct: 712 ILQQFDCLD--NLVPTALGQIAAAIRGENELWLGLALASGELNNLDPHHLAATIAALVTE 769
Query: 1050 GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSG---MV 1106
+ ++ + S + + + L + R + L++Q +HGV +P L++++ G +V
Sbjct: 770 TPR----PDSRVNFNLSPEIDDAWSRLQKTRRAVLKVQYRHGVALPVGLENRYIGLIALV 825
Query: 1107 EAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
E WA G+ W E+ + LD+GD+ R+LRR++DLL+QIP +P++ LQ+NA A ++DR
Sbjct: 826 EQWALGIEWVELCQNTTLDEGDVVRILRRSLDLLSQIPHVPNLPDVLQRNAYRAMQLIDR 885
Query: 1167 PPISEL 1172
P++E+
Sbjct: 886 FPVNEV 891
>gi|427720836|ref|YP_007068830.1| DSH domain-containing protein [Calothrix sp. PCC 7507]
gi|427353272|gb|AFY35996.1| DSH domain protein [Calothrix sp. PCC 7507]
Length = 890
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 389/1024 (37%), Positives = 554/1024 (54%), Gaps = 148/1024 (14%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L +I+ F +D+FQ+ +I + G SVVV APT SGKTL+ E A +A +R+FYTTP
Sbjct: 11 DLGTIFPFELDQFQKDAIASLNAGRSVVVCAPTGSGKTLVGEYAIFRALARGKRVFYTTP 70
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+FRE FG + VGLLTGD++INR+A IL+MTTEI RNMLY + +G +
Sbjct: 71 LKALSNQKLRDFREKFGFDQVGLLTGDASINRDAPILVMTTEIFRNMLYGTPIGQIGIS- 129
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L DVDV+VLDE HY++D RGTVWEE IIYCP+EVQ+ LSATVAN+D+L W+ ++HG
Sbjct: 130 -LIDVDVVVLDECHYMNDRQRGTVWEESIIYCPREVQLAALSATVANSDQLTDWLNRVHG 188
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
T+LI S RPVPL ++F L PLL++ +N +LS
Sbjct: 189 PTDLIYSDFRPVPLEFHFCNPKGLFPLLNDSNTKINPRLS-------------------- 228
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R RK D R + P +I TL HL+ RDMLPAI+FIF
Sbjct: 229 NRGKRKQGDRGKGG-------------------RPEAPGIIYTLSHLQQRDMLPAIYFIF 269
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD AV + D L++ E + + F P+A R I L +G+AAHHAG
Sbjct: 270 SRRGCDKAVAEVGDLWLVNNDESQILRRQIDDFLTRNPEAGRSGQIAPLYRGIAAHHAGI 329
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT +G L ++E Q
Sbjct: 330 LPAWKVLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLSKRTDNGHRLLNASEFLQ 389
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
MAGRAGRRG+D +GHVV VQTP+EGA+E L + +PLVSQFT SYGMVLNLL
Sbjct: 390 MAGRAGRRGMDKQGHVVTVQTPFEGAKEAAYLATSKPDPLVSQFTPSYGMVLNLL----- 444
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
++E+AR+L+E+SFG Y+ + + DE+ ++ + L ++I
Sbjct: 445 --------------QTHTIEQARELIERSFGQYMATLHLRPDYDEIAAVEAQLAQLQAQI 490
Query: 690 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 749
+ A+D +E A E L++ LK E++ L+ + + +R L +L +G
Sbjct: 491 A--AVDE------NELAIYE--KLRQRLKVERQLLRTLQEQAQEERQEQLSMMLGFAVSG 540
Query: 750 HLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDT 809
L L L+ K+ V V AV + + + S + N+
Sbjct: 541 TL--LSLKGKNIT-VPTPVTAVLIEQ--TPGSGETHNL---------------------- 573
Query: 810 QDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLW 869
V LG DN WY + +Y LPR + L + L
Sbjct: 574 --------VCLGKDNRWYVANAVDVVDLY------------AELPRVEVPLQILPPPDLL 613
Query: 870 EKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKV 929
K S G+ ET + + +P ++E L++ E EQ ++V
Sbjct: 614 LKPGQSR-------RGNEETAAIAQQIP------NAEESLYLPPE-------VTEQLSRV 653
Query: 930 ARLKKKIARTEGFKEYKKIVDTVKFTEE-KIKRLKARSKRLTKRIEQIEPSGWKEFLRIS 988
A ++ A+ E ++ F + + L+A + L ++ Q W+EFL +
Sbjct: 654 AAVQ---AQLEAHPLHESGNAGAIFKRQARCIELEAELQVLQGQVAQQSQRYWEEFLSLI 710
Query: 989 NVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVS 1048
++ LD V LG+ AAAIRGENELWL +V + L +L P LAA A+LV+
Sbjct: 711 EILQHFGCLD--NLVPTALGQIAAAIRGENELWLGLVFASGELDNLDPHHLAASIAALVT 768
Query: 1049 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEA 1108
E + ++ ++ S V + + L R +LQ ++ V +P L+ ++E
Sbjct: 769 ETPR----PDSKVHFDLSHEVADALAKLRGIRRQIFQLQRRYNVALPIWLELDLIALLEQ 824
Query: 1109 WASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPP 1168
WA G+ W E+ LD+GD+ R+LRRT+DLL+QIP +P++ LQ+NA A ++DR P
Sbjct: 825 WALGVEWTELCEHTTLDEGDVVRILRRTLDLLSQIPHVPNLPHALQRNAYRAMQLIDRFP 884
Query: 1169 ISEL 1172
++E+
Sbjct: 885 VNEV 888
>gi|427739317|ref|YP_007058861.1| superfamily II RNA helicase [Rivularia sp. PCC 7116]
gi|427374358|gb|AFY58314.1| superfamily II RNA helicase [Rivularia sp. PCC 7116]
Length = 889
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 382/1030 (37%), Positives = 543/1030 (52%), Gaps = 156/1030 (15%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
DVD +S++ F +D+FQ +I + G SVVV APT SGKTLI E A +A +R+FY
Sbjct: 9 DVDP-SSVFSFELDQFQHDAIASLNAGRSVVVCAPTGSGKTLIGEYAIYRALARGKRVFY 67
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVS 266
TTPLKALSNQK R+FR FG ++VGLLTGD++INR+A IL+MTTEI RNMLY + +G V
Sbjct: 68 TTPLKALSNQKLRDFRSEFGFDSVGLLTGDASINRDAPILVMTTEIFRNMLYGTPIGQVG 127
Query: 267 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326
+ L DV+ +VLDE HY++D RGTVWEE IIYCP+ +Q++ LSATV N+D+L W+ Q
Sbjct: 128 --TSLIDVEAVVLDECHYMNDRQRGTVWEESIIYCPESIQLVALSATVDNSDQLTDWLNQ 185
Query: 327 IHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
+HG T+LI S RPVPL ++F L PLL+E+ +N +L
Sbjct: 186 VHGPTDLIYSDYRPVPLDFHFGNSKGLFPLLNEEKTQLNHRLV----------------- 228
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
+ RK D + I R + P + L HLR RDMLPAI+
Sbjct: 229 ----KRKRKRGDKSKQ------------------IARQESPDISYVLEHLRQRDMLPAIY 266
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 506
FIF+RRGCD AV + D L+D E + + F PDA R + L +G+AAHH
Sbjct: 267 FIFSRRGCDRAVAEVGDLWLVDGDEAQRLRPQIDEFLTRNPDAGRAGHVGPLYRGIAAHH 326
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
AG LP WK+ +EELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT SG L +E
Sbjct: 327 AGILPAWKTLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLSKRTDSGHRLLNPSE 386
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
QMAGRAGRRG+D G+VV +QTP+EG++E L + +PLVSQF+ SYGMVLNLL
Sbjct: 387 FLQMAGRAGRRGMDEVGYVVTLQTPFEGSKEAGYLATSHPDPLVSQFSPSYGMVLNLL-- 444
Query: 627 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLT 686
+LEEA++L+E+SFG Y+ + + + + ++ +
Sbjct: 445 -----------------QTHTLEEAKELIERSFGQYLANLHLQPEYKRIAEFKQHLAQIQ 487
Query: 687 SEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDF 746
++I+D +S + L++ LK E++ T L+ + R L +L
Sbjct: 488 TKIAD----------VSAEEVAKYEKLRQRLKVERKLLTTLQEQAAETRKEELSMMLSFA 537
Query: 747 ENGHLPFLCLQYKDSEGVEHSVP--AVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNG 804
+G L L K + E S P AV +GK
Sbjct: 538 VSGTL----LSIK-GDNAEFSAPITAVLVGK----------------------------- 563
Query: 805 DDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDK 864
T + + V LG +N WY + + +Y P + ++ D LP LLL
Sbjct: 564 ----TPGNETPFLVCLGKNNRWYVTSVNDVIDLY-AQIPRIDISP-DLLP--PSQLLLKP 615
Query: 865 GEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKE 924
G+ G T + + +P E SF + VE +
Sbjct: 616 GQ---------------SCSGDEITEAIAAQIP---------EAPDDSFMAPEVVEQLRV 651
Query: 925 QRTKVARLKKKIARTEGFKE--YKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWK 982
+L+ G YK+ V+ L+A + L ++EQ W
Sbjct: 652 VTDVQEQLESSPLYGLGNAASIYKRQARAVE--------LEAEIQELRSQVEQQSQRHWD 703
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
EF+ + ++ A D V LG+ AAAIRGENELWL +VL + L L P A
Sbjct: 704 EFITLIEILQYFDAFD--NLVPTELGQMAAAIRGENELWLGLVLNSGNLDGLAPHHFATA 761
Query: 1043 CASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQF 1102
A+LV+E + ++ +E S+ V + + L R +LQ ++GV +P L+ +
Sbjct: 762 VAALVTETSR----PDSRVFFELSSEVADALASLRPIRRKVFQLQRRYGVALPVWLEFEL 817
Query: 1103 SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASN 1162
+VE WA G+ W E+ + LD+GD+ R+LRRT+DLL+QIP +P + Q +++NA A+
Sbjct: 818 ITLVEQWALGMDWVEICENTTLDEGDVVRILRRTLDLLSQIPHVPHLPQEIKRNAQRATQ 877
Query: 1163 VMDRPPISEL 1172
++DR P++E+
Sbjct: 878 LIDRFPVNEV 887
>gi|428224981|ref|YP_007109078.1| DSH domain-containing protein [Geitlerinema sp. PCC 7407]
gi|427984882|gb|AFY66026.1| DSH domain protein [Geitlerinema sp. PCC 7407]
Length = 930
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 388/1028 (37%), Positives = 541/1028 (52%), Gaps = 155/1028 (15%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L +++ F +D FQR +I A SVVV APT SGKTLI E A ++ RR+FYTTP
Sbjct: 48 DLDTLFPFELDSFQRQAIAALEAERSVVVCAPTGSGKTLIGEYAIYRALSRGRRVFYTTP 107
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+FRE FG NVGLLTGD++INR+A IL+MTTEI RNMLY + +G V +
Sbjct: 108 LKALSNQKLRDFREMFGAENVGLLTGDASINRDAPILVMTTEIFRNMLYGTPIGEVG--T 165
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L V+ +VLDE HY++D RGTVWEE IIYCP +VQ++ LSATVAN+++L WI ++HG
Sbjct: 166 SLVGVEAVVLDECHYMNDRQRGTVWEESIIYCPPDVQLVALSATVANSEQLTEWIHRVHG 225
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
TELI S RPVPL + FS L PLLD K +N +L ++ + + GG++
Sbjct: 226 PTELIYSDFRPVPLQFGFSNVKGLFPLLDNNQKKINPQL---------AKSRRGRKGGNQ 276
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R + + + P V + L+ RDMLPAI+FIF
Sbjct: 277 R------------------------------VPQEECPGVTTVVGQLQERDMLPAIYFIF 306
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD AV+ L D L+ E ++ + F P+ R I+ L +GVA+HHAG
Sbjct: 307 SRRGCDRAVEALGDMALVTPEEARQLREQVDAFLARNPEVGRVSQIEPLYRGVASHHAGL 366
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK+F+EELFQ+GLVKVVFATETLAAGINMPART V+SSLSKRT G L +E Q
Sbjct: 367 LPAWKAFVEELFQQGLVKVVFATETLAAGINMPARTTVISSLSKRTDRGHRLLNPSEFLQ 426
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
MAGRAGRRG+D G+VV QTP+EGA E L A +PLVSQFT SYGMVLNLL
Sbjct: 427 MAGRAGRRGMDTMGYVVTAQTPFEGAREASYLATAQADPLVSQFTPSYGMVLNLL----- 481
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
S++EAR+LVE+SFG Y+ + + + + ++ E + L ++I
Sbjct: 482 --------------QTHSVDEARELVERSFGQYLSTLYLQPQQRAIADLEAEYEQLEAQI 527
Query: 690 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 749
+ D A L + LK E+R L+++ E R + + LK G
Sbjct: 528 EEVDWD----------ALAHYEKLSQRLKEERRLLKILQQQAEEVRTKGMVEALKFAVAG 577
Query: 750 HLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDT 809
+ L K G +PAV + K + F
Sbjct: 578 TI----LSIK---GKAAPLPAVLVTKVHG------------SGQF--------------- 603
Query: 810 QDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLW 869
Y V LG DN WY T + +Y P +A+ LP E L L G++
Sbjct: 604 -----PYLVCLGEDNRWYVVTTGDVVALYG-EIPRLAIVDDLVLPPE---LPLKPGQV-- 652
Query: 870 EKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLS-ESDEVLHMSFEYHDAVENY--KEQR 926
SE + C E E + ++ P L SL+ E L + E +E + + R
Sbjct: 653 --RRSSEETAIIC-ELLRERLAVGIDDPSLMSLAPEVSGQLERATELEQELEAHPVHQWR 709
Query: 927 TKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG---WKE 983
+ + LK++ +RL + + +R E+++ W+E
Sbjct: 710 NRASILKRQ------------------------RRLSSLRSEINQRQEELDRQSHRHWEE 745
Query: 984 FLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVC 1043
FL + +++ L +GE AAIRG+NELWL M + + L+P AA C
Sbjct: 746 FLSLIDILQAFGCLHGYKPT--EIGEAIAAIRGDNELWLGMAMLSGSFDALQPHHFAAAC 803
Query: 1044 ASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFS 1103
A+LV+E + +W Y S V +N L R +LQ +H V +P L+ F
Sbjct: 804 AALVTEVSRPDIWTR----YTSSPEVDEALNDLRGLRRQLFQLQRRHQVAMPIWLEEDFI 859
Query: 1104 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNV 1163
+VE WA W E+ + +LD+GD+ R+LRRT+D L+Q+P +P + + +++NA A +
Sbjct: 860 SLVEQWALEADWVELCNNTSLDEGDVVRVLRRTLDFLSQLPHVPHLPEAMRRNAYQAIRL 919
Query: 1164 MDRPPISE 1171
+DR P+SE
Sbjct: 920 IDRFPVSE 927
>gi|209524293|ref|ZP_03272843.1| DSH domain protein [Arthrospira maxima CS-328]
gi|376003489|ref|ZP_09781299.1| putative helicase [Arthrospira sp. PCC 8005]
gi|423066797|ref|ZP_17055587.1| DSH domain protein [Arthrospira platensis C1]
gi|209495384|gb|EDZ95689.1| DSH domain protein [Arthrospira maxima CS-328]
gi|375328146|emb|CCE17052.1| putative helicase [Arthrospira sp. PCC 8005]
gi|406711822|gb|EKD07021.1| DSH domain protein [Arthrospira platensis C1]
Length = 904
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 385/1036 (37%), Positives = 560/1036 (54%), Gaps = 161/1036 (15%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L+ ++ F +D FQ+ +I A G SVVV APT +GKTLI E + +AN RR+FYTTP
Sbjct: 12 DLSDLFPFELDDFQKEAIAALDEGKSVVVCAPTGAGKTLIGEYSIHRALANGRRVFYTTP 71
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+FRE FGD VGLLTGD + +R+A IL+MTTEI RNMLY + +G V +
Sbjct: 72 LKALSNQKLRDFREQFGDEMVGLLTGDISFHRDAPILVMTTEIFRNMLYGTPIGQVGT-- 129
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L V+ +VLDE HY++D RGTVWEE IIYCP+ +Q++ LSATV N +L WI ++HG
Sbjct: 130 SLEGVEAVVLDECHYMNDRQRGTVWEESIIYCPRNIQLLALSATVDNQQQLTDWIRRVHG 189
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
TELI+S RPVP+ +YF + PLLD GS+
Sbjct: 190 PTELISSDSRPVPVEFYFCNSKGMFPLLD----------------------------GSK 221
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
RR I S + ++ + R+S VP++ D + L+ RDMLPAI+FIF
Sbjct: 222 RR------------ISPSLAKSSRARQRGSYNRKSTVPELADIVSRLQQRDMLPAIYFIF 269
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD AV + +L++ E + + + RF P A R ++ L KG+A+HHAG
Sbjct: 270 SRRGCDRAVGDVSHLSLVNRKEAAILRDRIDRFIKDTPGAARPKQLEPLAKGIASHHAGL 329
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK F+EELFQ GL+KVVFATETLAAGINMPART V+SSLSKRT G L ++E Q
Sbjct: 330 LPAWKMFVEELFQEGLIKVVFATETLAAGINMPARTTVISSLSKRTDDGHRLLRASEFLQ 389
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
M+GRAGRRG+D GHVV V+TP+EGA+E L + PLVSQF+ SYGMVLNLL
Sbjct: 390 MSGRAGRRGMDTIGHVVTVETPFEGAQEAAYLATSKPNPLVSQFSPSYGMVLNLL----- 444
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
SLEEA+ LVE SFG Y + ++ A+ + ++ + + +E+
Sbjct: 445 --------------QTHSLEEAKNLVESSFGQYTSTIHLVPAEQYIKNLEAKLAEVEAEL 490
Query: 690 S-DDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFEN 748
+ +D + E + Q+ LK EKR LK + K
Sbjct: 491 GLGEDLDINT----LEETLADYEKQQQRLKQEKRL---------------LKTLQKQARE 531
Query: 749 GHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDS----FALNRLAQSNG 804
H + A+ L + +L S + K++ + S + +AQ+
Sbjct: 532 AH-------------TQKMAEALDLAEVGTLVSLRGKHVPTARKSDSEPISAVLVAQTPS 578
Query: 805 DDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDK 864
+ Y++ LG DN WY +G +V Q + LPR T + L+
Sbjct: 579 PG------QAPYFIVLGRDNRWYI-----------VGAMDVVSLQAE-LPRLTWADHLEM 620
Query: 865 GEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKE 924
EM + KL S G T + ++ +P E+L D
Sbjct: 621 PEMQF-KLGQSR-------RGDEITEALAVQIP---------ELL-----VEDTAPEVAN 658
Query: 925 QRTKVARLKKKIAR--TEGFKEYKKIVDTVKFTEEKIKRLKARSKRLT---KRIEQIEPS 979
Q T++ ++++ +A E F + +KI+ ++++R KA K + + + Q
Sbjct: 659 QITRIEQVEEILATHPAEKFGKPQKIL-------KRLRRRKAIQKEIVDYQEELRQYLER 711
Query: 980 GWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 1039
W+EFL + +++ E ALD + Q LG+ AA+RG+NELWL +VL + +L+P L
Sbjct: 712 NWREFLNLIDILQEFEALD-DLQPT-KLGQATAALRGDNELWLGLVLMSGEFDNLEPYNL 769
Query: 1040 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVE---IPC 1096
A C++LV+E + W + Y+ S V +N L R S +++Q +H VE +P
Sbjct: 770 AGACSALVTEVSRSDSWTH----YQLSEVVQETLNRLWSLRRSLIKVQGRHHVEFLVLPE 825
Query: 1097 CLDSQ-FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQK 1155
+ Q S ++E WA G+ W E++ + LD+GD+ R++RRT D L+QIP +P + L+
Sbjct: 826 RREHQRLSAILEQWAGGVEWAELVKNTTLDEGDIVRIIRRTRDFLSQIPHVPHLSSTLKD 885
Query: 1156 NAVDASNVMDRPPISE 1171
NA++A N++DR P++E
Sbjct: 886 NAIEAKNLIDRFPVNE 901
>gi|334117201|ref|ZP_08491293.1| DSH domain protein [Microcoleus vaginatus FGP-2]
gi|333462021|gb|EGK90626.1| DSH domain protein [Microcoleus vaginatus FGP-2]
Length = 915
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 394/1045 (37%), Positives = 556/1045 (53%), Gaps = 167/1045 (15%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L +I+ F +D FQR +I A G SVVV APT SGKTLI E A ++ RR+FYTTP
Sbjct: 12 DLKTIFPFELDNFQREAIAALDAGKSVVVCAPTGSGKTLIGEYAIHQALSRGRRVFYTTP 71
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+FR FGD+NVGLLTGD ++NR+A IL+MTTEI RNMLY + +G V +
Sbjct: 72 LKALSNQKLRDFRSQFGDDNVGLLTGDISVNRDAPILVMTTEIFRNMLYGTPIGEVGT-- 129
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L V+ +VLDE HY++D RGTVWEE IIYC E+Q++ LSATVAN+++L WI ++HG
Sbjct: 130 SLTGVETVVLDECHYMNDRQRGTVWEESIIYCSSEIQLLALSATVANSEQLTDWINKVHG 189
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
TEL+ S RPVPL ++F+ + + PLLDE GK N +L
Sbjct: 190 PTELVYSDFRPVPLQFHFANQKGIFPLLDETGKRANVRL--------------------- 228
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
V Q ++ + SI P + D L L RDMLPAI+FIF
Sbjct: 229 ---------------VPKKKQQKVERGSI------PTPSLTDVLARLDDRDMLPAIYFIF 267
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD AV + + +L++E E +E++ + F P+A R + LLKG+AAHHAG
Sbjct: 268 SRRGCDQAVAEVGNFSLVNEAETAELKRIIDDFLQRNPEAERFGQKEALLKGIAAHHAGI 327
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK +EELF RGL+KVVFATETLAAGINMPART V+S+LSKRT G L ++E Q
Sbjct: 328 LPAWKGLVEELFGRGLIKVVFATETLAAGINMPARTTVISTLSKRTDKGHRLLNASEFLQ 387
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
MAGRAGRRG+D GHVV VQT +EGA+E L A +PL SQFT SYGMVLNLL
Sbjct: 388 MAGRAGRRGMDKLGHVVAVQTRFEGAKEASYLATAKADPLASQFTPSYGMVLNLL----- 442
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
+L+EA++LVE+SFG Y+ + + + EL ++Q E VL +
Sbjct: 443 --------------QTHTLDEAQELVERSFGQYLSTLYLQPQQSELDRLQTELAVLEQSL 488
Query: 690 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 749
A L E A+ E LQ LK +KR L ++ E RF + + G
Sbjct: 489 ---AAGGNVSTLEKELAHYE--KLQGRLKEDKRLLKILLQQAEEARFKEMSVAVAFAVLG 543
Query: 750 HLPFLCLQYKDSEGVEHS--VPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDY 807
+ L ++ + H+ VPAV + K S + N+
Sbjct: 544 TVLSLKGKHVPTAKRSHTNPVPAVLVAKIAG--SGQAPNL-------------------- 581
Query: 808 DTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDAL-PRETMSLLLDKGE 866
V LG DN WY + T++ P +++A D L P M L L +
Sbjct: 582 ----------VCLGKDNRWYVVAISDVATLH-AELPRLSVA--DTLNPPSEMPLRLGQ-- 626
Query: 867 MLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQR 926
C + ET S + ++P L + S E + EQ+
Sbjct: 627 ---------------CRLANEETASIAASIPELPTPEPSPEAI--------------EQQ 657
Query: 927 TKVARLKKKIARTEGFKEYKKIVD-----TVKFTEEKIKRLKARSKRLTKRIEQIEPSGW 981
K+A L+ ++ E ++++ T+ + + + LK ++ + +E+ W
Sbjct: 658 QKIAALEAQL-------EVHRVLEWGNPGTLLKRQRRREELKKEIRKSEQELEKQRARYW 710
Query: 982 KEFLR----------ISNVIHETRALDINTQVIFP--LGETAAAIRGENELWLAMVLRNK 1029
++FL + V+ T D ++ + P LG+ AAIRG+NELWL + L +
Sbjct: 711 EQFLNLIDILLNFGCLERVVSATGNRDDSSDRLVPTILGQACAAIRGDNELWLGLSLMSA 770
Query: 1030 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH-RSSFLELQE 1088
+L P LAA CA+LV+E + W + Y S V+ ++ L + R ++Q
Sbjct: 771 EFDELDPHHLAAACAALVTEVSRPDSWTH----YSLSPEVLAPLDNLQKGLRRRLFQVQY 826
Query: 1089 KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPD 1148
+H IP L+ +VE WA G+ W E++ +LD+GD+ R+LRRT+D L+QIP +P
Sbjct: 827 RHEAAIPIWLERDLVTLVEQWALGVEWLELISHTSLDEGDVVRILRRTLDFLSQIPHVPH 886
Query: 1149 VDQRLQKNAVDASNVMDRPPISELA 1173
V L++NA A ++DR P++E A
Sbjct: 887 VSDSLRRNACRAMQLIDRFPVNEAA 911
>gi|427707494|ref|YP_007049871.1| DSH domain-containing protein [Nostoc sp. PCC 7107]
gi|427359999|gb|AFY42721.1| DSH domain protein [Nostoc sp. PCC 7107]
Length = 890
Score = 597 bits (1539), Expect = e-167, Method: Compositional matrix adjust.
Identities = 401/1036 (38%), Positives = 564/1036 (54%), Gaps = 174/1036 (16%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L SI+ F +D+FQ+ +I + G SVVV APT SGKTL+ E A +A ++R+FYTTPL
Sbjct: 12 LGSIFPFDLDQFQKDAIASLNAGRSVVVCAPTGSGKTLVGEYAIYRALARRKRVFYTTPL 71
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSESG 270
KALSNQK R+FRE FG + VGLLTGD++INR+A IL+MTTEI RNMLY + +G V
Sbjct: 72 KALSNQKLRDFREKFGADLVGLLTGDASINRDAPILVMTTEIFRNMLYGTPIGQVGI--S 129
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L DV+ +VLDE HY++D RGTVWEE IIYCP+EVQ++ LSATVAN+++L W+ +HG
Sbjct: 130 LVDVEAVVLDECHYMNDRQRGTVWEESIIYCPREVQLVALSATVANSEQLTDWLNHVHGP 189
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG-GSR 389
T+LI S RPVPL + F L PLL+E +N +L VK ++ G G R
Sbjct: 190 TDLIYSDFRPVPLEFNFCNPKGLFPLLNESKNKINPRL-----------VKKHRKGQGDR 238
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
+N R A P +I TL L+ RDMLPAI+FIF
Sbjct: 239 GKNGRPEA-----------------------------PGIIYTLSQLQQRDMLPAIYFIF 269
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD AV + D L++ E + + F P+A R I L +GVAAHHAG
Sbjct: 270 SRRGCDKAVAEVGDLWLVNGQESQILREQIDDFLNRNPEAGRSGQIAPLYRGVAAHHAGI 329
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT +G L ++E Q
Sbjct: 330 LPAWKVLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLSKRTDTGHRLLNASEFLQ 389
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
MAGRAGRRG+D +G+VV VQTP+EG++E L + +PLVSQFT SYGMVLNLL
Sbjct: 390 MAGRAGRRGMDKQGYVVTVQTPFEGSKEAAYLATSKADPLVSQFTPSYGMVLNLL----- 444
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
++E+AR+LVE+SFG Y+ + + DE+ ++Q++ L +I
Sbjct: 445 --------------QTHTIEQARELVERSFGQYIANLHLKPEYDEIAELQEQLAQLQEQI 490
Query: 690 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 749
+ A+D SE A E L++ LK E++ L+++ + R L +L +G
Sbjct: 491 A--AVDE------SEIAVYE--KLRQRLKVERQLLKTLQQQAQDDRQEELVMMLGFAVSG 540
Query: 750 HLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDT 809
L L L+ K+ V + AV +GK LAQ+
Sbjct: 541 TL--LSLKGKNIT-VSTPITAVLVGKSPG--------------------LAQT------- 570
Query: 810 QDVKPSYYVALGSDNTWYTFTEKWIKTVY----RIGFPNVALAQGDALPRETMSLLLDKG 865
Y+V LG DN WY T + + ++ R+ P D LP LL G
Sbjct: 571 -----PYFVCLGQDNRWYVATTEDVMNLHAEMPRLDVP------ADMLP--PPELLFKPG 617
Query: 866 EMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQ 925
+ G+ +T + + ++P E E H+S E EQ
Sbjct: 618 Q---------------SYRGNEQTAAIAQSIP------EPGEPFHLSPE-------VAEQ 649
Query: 926 RTKVARLKKKIA----RTEG-----FKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQI 976
++V ++++I R G FK + V+ L+A ++L +++EQ
Sbjct: 650 LSRVTAIEEQIENHPLRQSGNASTIFKRRARYVE-----------LEAELEQLQEQVEQQ 698
Query: 977 EPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKP 1036
W+EFL + ++ + LD V LG AAAIRGENELWL +V + L L P
Sbjct: 699 SQRHWEEFLNLITILQQFGCLD--NLVPTELGRIAAAIRGENELWLGLVFASGQLNQLDP 756
Query: 1037 AQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPC 1096
LAA A+LV+E + ++ ++ S V + L R +LQ ++ V +P
Sbjct: 757 HHLAAAIAALVTETPR----PDSRVNFDLSQEVAEALAKLRNIRRQMFQLQRRYNVALPI 812
Query: 1097 CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKN 1156
L+ + +VE WA G+ W E+ LD+GD+ R+LRRT+DLL+QIP +P + + LQ+N
Sbjct: 813 WLEFELIAIVEKWALGMEWTELCSHTTLDEGDVVRILRRTLDLLSQIPHVPHLPEILQRN 872
Query: 1157 AVDASNVMDRPPISEL 1172
A A ++DR P++E+
Sbjct: 873 AYRAMQLIDRFPVNEV 888
>gi|411120335|ref|ZP_11392709.1| superfamily II RNA helicase [Oscillatoriales cyanobacterium JSC-12]
gi|410709716|gb|EKQ67229.1| superfamily II RNA helicase [Oscillatoriales cyanobacterium JSC-12]
Length = 898
Score = 597 bits (1538), Expect = e-167, Method: Compositional matrix adjust.
Identities = 385/1021 (37%), Positives = 539/1021 (52%), Gaps = 146/1021 (14%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L ++ F++D+FQ+ +I A G SVVV APT SGKTLI E A +A RR+FYTTP
Sbjct: 19 DLNQLFPFQLDEFQKRAIAALEAGRSVVVCAPTGSGKTLIGEYAIYRALARDRRVFYTTP 78
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+FRE FG + VGLLTGD +INR+A IL+MTTEI RNMLY + +G V +
Sbjct: 79 LKALSNQKLRDFREIFGTDQVGLLTGDVSINRDAPILVMTTEIFRNMLYGTPIGEVG--T 136
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L V+ +VLDE HY++D RGTVWEE IIYCP ++Q++ LSATV N+D+L WI Q+HG
Sbjct: 137 SLVGVEAVVLDECHYMNDRQRGTVWEESIIYCPADIQLVALSATVDNSDQLTDWIQQVHG 196
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
TELI S RPVPL +++ T L PLLD+ K ++ +L KP GG
Sbjct: 197 PTELIYSDFRPVPLQFHYCTPKGLFPLLDDTQKRIHPRL------------KP--KGGQA 242
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R +K R + P + L L+ RDMLPAI+FIF
Sbjct: 243 GRVGKKSP-------------------------RQESPSLAYVLSQLQQRDMLPAIYFIF 277
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD AV L D + +D E +++ + F P+A R ++ L +G+AAHHAG
Sbjct: 278 SRRGCDQAVTNLGDISFVDRNEAIQLKEQIDAFLERNPEAGRAGQVEPLYRGIAAHHAGL 337
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLSKRT G L ++E Q
Sbjct: 338 LPAWKGLVEELFQQGLIKVVFATETLAAGINMPARTTVISSLSKRTDLGHRLLNASEFLQ 397
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
MAGRAGRRG+D GHVV VQTP+EGA E L AG +PLVSQFT SYGMVLNLL
Sbjct: 398 MAGRAGRRGMDVLGHVVTVQTPFEGAREAAYLATAGADPLVSQFTPSYGMVLNLL----- 452
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
+L+EA++L+E+SFG Y+ + + ++ + ++ E L +++
Sbjct: 453 --------------QTHTLDEAKELIERSFGQYLATLYLRPQQEAIAHLEAELAQLQAQV 498
Query: 690 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 749
+++D + LL+ + LQE LK E+R L+ + + R + L G
Sbjct: 499 --ESVDWE---LLA-----QYEKLQERLKEERRLLKILQSQADDVRMHDMAIALSFAVAG 548
Query: 750 HLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDT 809
+ L QY V + AV + K + +
Sbjct: 549 TILSLKGQYVP---VPEPISAVLVTK-------------------------TAGAGQF-- 578
Query: 810 QDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLW 869
Y V LG DN WY T + + R P + LP E + L G+
Sbjct: 579 -----PYLVCLGQDNRWYVTTVSDVVDL-RAEIPRIVAVDHLTLPPE---MPLKPGQ--- 626
Query: 870 EKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKV 929
+GS ET + + +P + S +H + VE + Q V
Sbjct: 627 ------------SRKGSAETEAIAERLPDPVPSANSAPEVHTQQQRLQEVER-QIQNHPV 673
Query: 930 ARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISN 989
R R K K+I +++ ++L +S R W+ FL + +
Sbjct: 674 HRWSN---RGTILKRQKRIQSIHTELQDRREKLDRQSHRY-----------WEAFLDLID 719
Query: 990 VIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
++ L+ V LGE AAIRG+NELWL + L + DL+P AA CA+LV+E
Sbjct: 720 ILRNFGCLE--ELVPTALGEVTAAIRGDNELWLGLALTSGEFDDLEPHHFAAACAALVTE 777
Query: 1050 GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAW 1109
+ W Y+ + V + L R S +LQ ++ V +P L+ F G+VE W
Sbjct: 778 VSRPDSWTR----YDLPSPVEEALGGLRGIRHSLFKLQRRYQVVLPIWLEYDFVGLVEQW 833
Query: 1110 ASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
A G W + + +LD+GD+ R+LRRT+D L+QIP +P + L++ ++ A ++DR P+
Sbjct: 834 ALGSDWLALCENTSLDEGDIVRVLRRTLDFLSQIPHVPHLSDSLKQKSIQAIQLIDRFPV 893
Query: 1170 S 1170
S
Sbjct: 894 S 894
>gi|414075935|ref|YP_006995253.1| DNA/RNA helicase [Anabaena sp. 90]
gi|413969351|gb|AFW93440.1| DNA/RNA helicase [Anabaena sp. 90]
Length = 893
Score = 596 bits (1537), Expect = e-167, Method: Compositional matrix adjust.
Identities = 387/1037 (37%), Positives = 558/1037 (53%), Gaps = 159/1037 (15%)
Query: 142 FGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN 201
F NE+ +L SI+ F +D+FQ+ +I + SVVV APT SGKTLI E A ++
Sbjct: 6 FANEI----DLGSIFPFELDQFQKEAIASLNADRSVVVCAPTGSGKTLIGEYAIYRALSR 61
Query: 202 QRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS 261
+R+FYTTPLKALSNQK R+FRE FG + VGLLTGD++I+R+A IL+MTTEI RNMLY +
Sbjct: 62 GKRVFYTTPLKALSNQKLRDFREKFGFDQVGLLTGDASIHRDAPILVMTTEIFRNMLYGT 121
Query: 262 -VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 320
+G + L DV+ +VLDE HY++D RGTVWEE IIYCP+ VQ++ LSATVAN+D+L
Sbjct: 122 PIGQIGI--SLADVEAVVLDECHYMNDRQRGTVWEESIIYCPRSVQLVALSATVANSDQL 179
Query: 321 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 380
W+ +HG T+LI S RPVPL + F L PLL+E +N +L V
Sbjct: 180 TSWLNHVHGHTDLIYSDFRPVPLEFNFCNPKGLFPLLNETNTKINPRL-----------V 228
Query: 381 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 440
K K G + + R + P +I TL L+ RD
Sbjct: 229 KKAKKGYWEKGKAG----------------------------RPEPPGIIYTLSQLQERD 260
Query: 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK 500
MLPAI+FIF+RRGCD AV+ + D L++ E + + F PDA R + L +
Sbjct: 261 MLPAIYFIFSRRGCDKAVEEVGDLWLVNNDESQILRQQIDEFLRKNPDAGRAGQVAPLYR 320
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+AAHHAG LP WK F+EELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT +G
Sbjct: 321 GIAAHHAGILPAWKGFVEELFQQGLIKVVFATETLAAGINMPARTTVISTLSKRTDNGHR 380
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
L ++E QMAGRAGRRG+D +G+VV +QTP+EGA+E L + +PLVSQFT SYGMV
Sbjct: 381 LLNASEFLQMAGRAGRRGMDLQGYVVTLQTPFEGAKEASYLATSKADPLVSQFTPSYGMV 440
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
LNLL ++E+AR+L+E+SFG Y+ + + +EL ++Q
Sbjct: 441 LNLL-------------------QTHTIEKARELIERSFGQYMSNLHLQPDFEELAQVQG 481
Query: 681 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKR--FSA 738
E + S+++ AID E ++ EK LR+R++++R F
Sbjct: 482 ELSQIQSQLA--AIDEN-----------------ELMQYEK-----LRQRLKVERQIFKT 517
Query: 739 LKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNR 798
L++ ++ L + LD + M S+ND A++
Sbjct: 518 LQEQAQEDRQAQLAMM------------------------LDFAISGTMLSLNDRNAMSP 553
Query: 799 LAQSNG-DDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRET 857
L + D + SY+V LG +N WY T I +Y P V + P E
Sbjct: 554 LPITVVLVDKAVSVGETSYFVCLGQNNRWYVATSADILDMY-AEIPRVEVPAQLIPPSE- 611
Query: 858 MSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHD 917
L L +G+ + G T + + S+ +E H+ E
Sbjct: 612 --LSLKRGQ---------------SIRGDEST------IAIAQSIPNPEEFNHLPTE--- 645
Query: 918 AVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIE 977
+EQ +++ +++++ T + I K + L+A + L +++
Sbjct: 646 ----VQEQLSRLTAVQEQL-ETHPIYKSGNIAKIFK-NRARCVELEAELEHLQEQVSLQS 699
Query: 978 PSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPA 1037
W+EFL + ++ LD V LG+ AAAIRGENELWL +VL + L ++ P
Sbjct: 700 QRYWEEFLCLIEILQSFECLD--NLVPTKLGQIAAAIRGENELWLGLVLSSGELDNIGPH 757
Query: 1038 QLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCC 1097
LAAV A+LV+E + + + S L R S L++Q +HGV +P
Sbjct: 758 NLAAVIAALVTESPR----PDTKVDFNLSPEADAAWLTLQPIRRSVLKVQYRHGVALPVG 813
Query: 1098 LDSQF---SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQ 1154
L+++F +VE WA G+ W+ + LD+GD+ R+LRRT+DLL+QIP +P++ L+
Sbjct: 814 LETRFISLISLVEQWALGVEWKVLCEKTTLDEGDVVRILRRTLDLLSQIPHVPNLPDMLR 873
Query: 1155 KNAVDASNVMDRPPISE 1171
+NA A ++DR P++E
Sbjct: 874 RNAQRAMQLIDRFPVNE 890
>gi|409993430|ref|ZP_11276571.1| DSH-like protein [Arthrospira platensis str. Paraca]
gi|409935699|gb|EKN77222.1| DSH-like protein [Arthrospira platensis str. Paraca]
Length = 912
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 383/1035 (37%), Positives = 558/1035 (53%), Gaps = 159/1035 (15%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L+ ++ F +D FQ+ +I A G SVVV APT +GKTLI E + +AN RR+FYTTP
Sbjct: 20 DLSYLFPFELDDFQKEAIAALEEGKSVVVCAPTGAGKTLIGEYSIHRALANGRRVFYTTP 79
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+FRE FGD VGLLTGD + +R+A IL+MTTEI RNMLY + +G V +
Sbjct: 80 LKALSNQKLRDFREQFGDEMVGLLTGDISFHRDAPILVMTTEIFRNMLYGTPIGEVGT-- 137
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L V+ +VLDE HY++D RGTVWEE IIYCP+ +Q++ LSATV N +L WI ++HG
Sbjct: 138 SLEGVEAVVLDECHYMNDRQRGTVWEESIIYCPRNIQLLALSATVDNQQQLTDWIRRVHG 197
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
TELI+S RPVP+ +YF + PLLD GS+
Sbjct: 198 PTELISSDSRPVPVEFYFCNSKGMFPLLD----------------------------GSK 229
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
RR I S + ++ + R+S VP++ D + L+ RDMLPAI+FIF
Sbjct: 230 RR------------ISPSLAKSSRARQRGSYNRKSGVPELADIVLRLKQRDMLPAIYFIF 277
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD AV + +L+ E + + RF P A R ++ L KG+A+HHAG
Sbjct: 278 SRRGCDRAVGDISHLSLVSPKEAQILRDRINRFIKETPGAARPKQLEPLAKGIASHHAGL 337
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK F+EELFQ GL+KVVFATETLAAGINMPART V+SSLSKRT G L ++E Q
Sbjct: 338 LPAWKIFVEELFQEGLIKVVFATETLAAGINMPARTTVISSLSKRTDDGHRLLRASEFLQ 397
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
M+GRAGRRG+D GHVV V+TP+EGAEE L + PLVSQF+ SYGMVLNLL
Sbjct: 398 MSGRAGRRGMDTIGHVVTVETPFEGAEEAAYLATSKPNPLVSQFSPSYGMVLNLL----- 452
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
SLE+A+ LVE+SFG Y+ + ++ A+ + ++ + + +E+
Sbjct: 453 --------------QTHSLEKAKNLVERSFGQYISTLSLVPAEQHIKNLETKLAQVEAEL 498
Query: 690 S-DDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFEN 748
+ +D + E E Q+ LK EKR L+++ R + +
Sbjct: 499 GLGEDLDINT----LEDTLAEYEKQQQRLKQEKRLLKTLQKQAREARTQKMAE------- 547
Query: 749 GHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM--ASINDSFALNR--LAQSNG 804
A+ L F +L S + K++ A +DS ++ +AQ+
Sbjct: 548 ---------------------ALDLAAFGTLVSLRGKHVPTARKSDSPPISAVLVAQTPS 586
Query: 805 DDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDK 864
+ Y++ LG DN WY + ++ LPR T L+
Sbjct: 587 PG------QAPYFLCLGRDNRWYIVAAMDVVNLH------------AELPRLTWVDHLEM 628
Query: 865 GEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSF---EYHDAVEN 921
EM + KL S G T + ++ +P L + EV++ + + +
Sbjct: 629 PEMQF-KLGQSR-------RGDEITEALAVQIPELLVADTAPEVVNQITRIEQVEEILAT 680
Query: 922 YKEQR-TKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG 980
+ Q+ K ++ K+++R + K+IVD + EE + Q
Sbjct: 681 HPAQKFGKPQKILKRLSRRSAIQ--KEIVD---YQEE---------------LRQYLERN 720
Query: 981 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 1040
W+EFL + +++ E ALD + Q LG+ AA+RG+NELWL +VL + +L+P LA
Sbjct: 721 WREFLNLIDILQEFEALD-DLQPT-KLGQATAALRGDNELWLGLVLMSGEFDNLEPYNLA 778
Query: 1041 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVE---IPCC 1097
C++LV+E + W + Y+ S V +N L R S +++Q +H VE +P
Sbjct: 779 GACSALVTEVSRSDSWTH----YQLSEVVQETLNRLWSLRRSLIKVQGRHRVEFLVLPER 834
Query: 1098 LDSQ-FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKN 1156
+ Q S ++E WA G+ W E++ + LD+GD+ R++RRT D L+QIP +P + L+ N
Sbjct: 835 REHQRLSAILEQWAGGVEWAELVKNTTLDEGDIVRIIRRTRDFLSQIPHVPHLSSTLKDN 894
Query: 1157 AVDASNVMDRPPISE 1171
A++A N++DR P++E
Sbjct: 895 AIEAKNLIDRFPVNE 909
>gi|255082724|ref|XP_002504348.1| predicted protein [Micromonas sp. RCC299]
gi|226519616|gb|ACO65606.1| predicted protein [Micromonas sp. RCC299]
Length = 934
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 394/1051 (37%), Positives = 545/1051 (51%), Gaps = 153/1051 (14%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ+ + A +RG SVVVSAPT SGKTL+ E A + +A ++ YTTPLKAL
Sbjct: 1 VYDFPLDGFQKEATAALVRGDSVVVSAPTGSGKTLVGETAIMTALARGQKAIYTTPLKAL 60
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINR-EAQILIMTTEILRNMLY-----------QSV 262
SNQK REF+ FG VGL TGD IN +A +++MTTEILRNMLY S
Sbjct: 61 SNQKLREFQALFGVRRVGLKTGDVDINTADADVVVMTTEILRNMLYPQATGDEGTDPTSA 120
Query: 263 GMVSSESG------LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316
G E G L DV V+VLDEVHYLSD SRGTVWEE IIYCP VQ++CLSATV N
Sbjct: 121 GATIGEFGGVSDGRLDDVGVVVLDEVHYLSDASRGTVWEETIIYCPPRVQLLCLSATVGN 180
Query: 317 ADELAGWIGQIHG------KTELITSSRRPVPLTWYFSTK-----TALLPLLDEKGKHMN 365
D+LAGWI ++H + + I S RPVPL W+FS + L PLL+ G
Sbjct: 181 PDDLAGWIEEVHCAGASSQRCQTIVSDYRPVPLNWHFSMRPGRMWPGLGPLLNRNGTK-- 238
Query: 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 425
LNY E+ P+ G +R+ A N +
Sbjct: 239 ----LNY------ELFPFTKEG-----AREWAAANGGAGL-------------------- 263
Query: 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN--LLDECEMSEVELALKRFR 483
VP V T+ L + MLPA+WFIF+R+GCD A YL DC L+ E +++ AL+ F
Sbjct: 264 VPHVETTVGQLVAASMLPAVWFIFSRKGCDQAAFYLADCGAKLVTPKEEAQIAAALEEFE 323
Query: 484 ILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 543
PDA+R A+ LL G+A+HHAG LP WK +E LFQRGL+KVVFATETLAAG+NMPA
Sbjct: 324 KSNPDAMRPEAVIPLLMGIASHHAGLLPGWKGLVENLFQRGLLKVVFATETLAAGVNMPA 383
Query: 544 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 603
R +VLS+LSKR G LTSNE QM GRAGRRG D GHVV Q+P+EG EE L+
Sbjct: 384 RCSVLSALSKRGDEGPRMLTSNEFMQMCGRAGRRGYDTVGHVVCCQSPFEGCEEAFGLVT 443
Query: 604 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 663
A E L SQF+ SYGMVLNL L+AGR L R +VE+SFGNY+
Sbjct: 444 APPENLKSQFSISYGMVLNL------------------LRAGRPLSSVRSIVERSFGNYL 485
Query: 664 GSNVMLAAKDELCKIQKETDVLTSEIS--DDAIDRKSRRLLSEAAYKEMANLQEELKAEK 721
G EL +I++++D L +I+ D ++ + + L E LK E+
Sbjct: 486 GGRARREQVRELRRIREQSDALREQIATGDCGVEPEE--------WARFIKLDERLKEER 537
Query: 722 RFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDS 781
R LK I + ++ +D+ V +VP V K D
Sbjct: 538 RL---------------LKIISRQTDDAMAEMARANVRDALEVLDTVP-VARSKVDLTPV 581
Query: 782 SKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIG 841
+ ++ S + A+ L + +V L +D TWY F IK V
Sbjct: 582 AVVEAYDSTGVASAMYPLGE---------------FVGLAADGTWYRFDASRIKAVSENP 626
Query: 842 FPNVALAQGD--ALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVL 899
+ G+ A P T G + W + + GGLW +G+ E + V
Sbjct: 627 VLHADQDGGEWTAPPTPT------PGSLRWVRAS----GGLWRAQGNEEAVEAAQQV--- 673
Query: 900 SSLSESDEVLHMSFEYH-DAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEK 958
S++ S E ++ + + DA+ EQR ++A K ++ + F + ++ V EK
Sbjct: 674 -SIALSSEAINSADDSEADALAFLDEQRARIAATKAELHEMKMFSDMRRAVKKTNRKREK 732
Query: 959 IKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGEN 1018
+K+L+ R+ K++E+ L +V H T + PLGE A +RGEN
Sbjct: 733 LKKLEERA----KKVERRRRRRDARRLARWDVKHGGSDRAEETLRLTPLGECCAKLRGEN 788
Query: 1019 ELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDE 1078
ELWL + L ++ L L P Q+A V +L + + S Y+PS + N + L+
Sbjct: 789 ELWLGVALSSECLEGLDPTQIAGVAGALCCDSN-----RPTSCDYDPSPALGNALADLEP 843
Query: 1079 HRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 1138
+ + LQ + + P + + +VE+WASG TW ++ D L++GD+AR+ RRT +
Sbjct: 844 EMAEVMALQFEAAMSSPVNMSRAVAALVESWASGATWDQVRGDTNLEEGDIARVFRRTSE 903
Query: 1139 LLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
LLAQ+P+ ++ +K A A+ ++ RPPI
Sbjct: 904 LLAQMPRARELPLATRKAAEQAAQLVLRPPI 934
>gi|291571682|dbj|BAI93954.1| putative helicase [Arthrospira platensis NIES-39]
Length = 904
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 383/1035 (37%), Positives = 558/1035 (53%), Gaps = 159/1035 (15%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L+ ++ F +D FQ+ +I A G SVVV APT +GKTLI E + +AN RR+FYTTP
Sbjct: 12 DLSYLFPFELDDFQKEAIAALEEGKSVVVCAPTGAGKTLIGEYSIHRALANGRRVFYTTP 71
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+FRE FGD VGLLTGD + +R+A IL+MTTEI RNMLY + +G V +
Sbjct: 72 LKALSNQKLRDFREQFGDEMVGLLTGDISFHRDAPILVMTTEIFRNMLYGTPIGEVGT-- 129
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L V+ +VLDE HY++D RGTVWEE IIYCP+ +Q++ LSATV N +L WI ++HG
Sbjct: 130 SLEGVEAVVLDECHYMNDRQRGTVWEESIIYCPRNIQLLALSATVDNQQQLTDWIRRVHG 189
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
TELI+S RPVP+ +YF + PLLD GS+
Sbjct: 190 PTELISSDSRPVPVEFYFCNSKGMFPLLD----------------------------GSK 221
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
RR I S + ++ + R+S VP++ D + L+ RDMLPAI+FIF
Sbjct: 222 RR------------ISPSLAKSSRARQRGSYNRKSGVPELADIVLRLKQRDMLPAIYFIF 269
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD AV + +L+ E + + RF P A R ++ L KG+A+HHAG
Sbjct: 270 SRRGCDRAVGDISHLSLVSPKEAQILRDRINRFIKETPGAARPKQLEPLAKGIASHHAGL 329
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK F+EELFQ GL+KVVFATETLAAGINMPART V+SSLSKRT G L ++E Q
Sbjct: 330 LPAWKIFVEELFQEGLIKVVFATETLAAGINMPARTTVISSLSKRTDDGHRLLRASEFLQ 389
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
M+GRAGRRG+D GHVV V+TP+EGAEE L + PLVSQF+ SYGMVLNLL
Sbjct: 390 MSGRAGRRGMDTIGHVVTVETPFEGAEEAAYLATSKPNPLVSQFSPSYGMVLNLL----- 444
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
SLE+A+ LVE+SFG Y+ + ++ A+ + ++ + + +E+
Sbjct: 445 --------------QTHSLEKAKNLVERSFGQYISTLSLVPAEQHIKNLETKLAQVEAEL 490
Query: 690 S-DDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFEN 748
+ +D + E E Q+ LK EKR L+++ R + +
Sbjct: 491 GLGEDLDINT----LEDTLAEYEKQQQRLKQEKRLLKTLQKQAREARTQKMAE------- 539
Query: 749 GHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM--ASINDSFALNR--LAQSNG 804
A+ L F +L S + K++ A +DS ++ +AQ+
Sbjct: 540 ---------------------ALDLAAFGTLVSLRGKHVPTARKSDSPPISAVLVAQTPS 578
Query: 805 DDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDK 864
+ Y++ LG DN WY + ++ LPR T L+
Sbjct: 579 PG------QAPYFLCLGRDNRWYIVAAMDVVNLH------------AELPRLTWVDHLEM 620
Query: 865 GEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSF---EYHDAVEN 921
EM + KL S G T + ++ +P L + EV++ + + +
Sbjct: 621 PEMQF-KLGQSR-------RGDEITEALAVQIPELLVADTAPEVVNQITRIEQVEEILAT 672
Query: 922 YKEQR-TKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG 980
+ Q+ K ++ K+++R + K+IVD + EE + Q
Sbjct: 673 HPAQKFGKPQKILKRLSRRSAIQ--KEIVD---YQEE---------------LRQYLERN 712
Query: 981 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 1040
W+EFL + +++ E ALD + Q LG+ AA+RG+NELWL +VL + +L+P LA
Sbjct: 713 WREFLNLIDILQEFEALD-DLQPT-KLGQATAALRGDNELWLGLVLMSGEFDNLEPYNLA 770
Query: 1041 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVE---IPCC 1097
C++LV+E + W + Y+ S V +N L R S +++Q +H VE +P
Sbjct: 771 GACSALVTEVSRSDSWTH----YQLSEVVQETLNRLWSLRRSLIKVQGRHRVEFLVLPER 826
Query: 1098 LDSQ-FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKN 1156
+ Q S ++E WA G+ W E++ + LD+GD+ R++RRT D L+QIP +P + L+ N
Sbjct: 827 REHQRLSAILEQWAGGVEWAELVKNTTLDEGDIVRIIRRTRDFLSQIPHVPHLSSTLKDN 886
Query: 1157 AVDASNVMDRPPISE 1171
A++A N++DR P++E
Sbjct: 887 AIEAKNLIDRFPVNE 901
>gi|359460541|ref|ZP_09249104.1| DEAD/DEAH box-like helicase [Acaryochloris sp. CCMEE 5410]
Length = 909
Score = 594 bits (1531), Expect = e-166, Method: Compositional matrix adjust.
Identities = 373/1026 (36%), Positives = 547/1026 (53%), Gaps = 151/1026 (14%)
Query: 147 IDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIF 206
I V E ++ +++D+FQ+ ++ A SVVVSAPT SGKT++ E A + +R+F
Sbjct: 3 ISVPEFQQLFPYQLDEFQQQAVNALDANQSVVVSAPTGSGKTMVGEYAIYRALQQGQRVF 62
Query: 207 YTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVS 266
YTTPLKALSNQK R+F+ FGD +VGLLTGD ++NR A IL+MTTEI RN+LY ++ V
Sbjct: 63 YTTPLKALSNQKLRDFQHMFGDQSVGLLTGDLSVNRAAPILVMTTEIFRNILYGTLTDVV 122
Query: 267 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326
+ S L V ++LDE HY++D RGTVWEE IIYCP E+Q+I LSATVANA +L W+
Sbjct: 123 NTS-LEGVTSVILDECHYMNDRQRGTVWEESIIYCPAEIQLIALSATVANAQQLVDWMSW 181
Query: 327 IHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
+HG T+LI S RPVPL ++F+ L PLL++K +N +L
Sbjct: 182 VHGPTQLIESDWRPVPLAFFFANAKGLFPLLNQKHTALNPRL------------------ 223
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
+ ++KH +HQ RR+ P VI L HLR R+MLPAI+
Sbjct: 224 ---KAQAKKHHGH----------RHQ---------RRADSPDVIAVLQHLREREMLPAIY 261
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 506
FIF+R+GCD V+ NLL E +++++ ++ FR +PD + + G+AAHH
Sbjct: 262 FIFSRKGCDRTVESTAHLNLLTPAESAQMQIQIETFRQQHPDVGQPQQFAAIAHGIAAHH 321
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
AG LP WK+++EELFQ GL+KVVFATETLAAGINMPART V++SLSKRT G LT++E
Sbjct: 322 AGLLPQWKTWVEELFQAGLIKVVFATETLAAGINMPARTTVIASLSKRTDLGHRLLTASE 381
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
+ QMAGRAGRRG+D +G+V+ VQTP+EGA+E L G +PLVSQFT SYGMVLNLL
Sbjct: 382 VLQMAGRAGRRGMDTQGYVITVQTPFEGAKEAAYLATIGPDPLVSQFTPSYGMVLNLL-- 439
Query: 627 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLT 686
R+L+E+++L++QSFG Y+ S + K + +Q+E +L
Sbjct: 440 -----------------QTRTLDESKRLIDQSFGQYIASVQLSPQKQAIADLQQELTLL- 481
Query: 687 SEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDF 746
R+ ++E A K LQ+ LK E+R L ++ + S L +L
Sbjct: 482 ---------RQKLGTINEGALKSYQKLQQRLKEERRLLKILDQQAQETLASELALLLDHI 532
Query: 747 ENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDD 806
E+G + L + K+ ++ F N + +
Sbjct: 533 ESGAI---------------------------LSFTPPKSKMPVSGVFVANIPSPGHF-- 563
Query: 807 YDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGE 866
Y V L +N W+ + V + LAQ L L KG+
Sbjct: 564 --------PYLVCLSQNNHWFIISR---GDVMHLDGQLDRLAQAPQL--TVPPSLTKKGQ 610
Query: 867 MLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQR 926
+G + + +P S+ + EV H + AVE+ +Q
Sbjct: 611 ---------------SQQGDATSLQVAQQIPD-STWQPAPEVTHQQ-QRLQAVESQMQQH 653
Query: 927 TKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLR 986
A + F +++ V T++ ++L R + ++ + W+ F+
Sbjct: 654 PAHASRQDH----SKFARWQRRVTTLE------RQLHDRETKFNRQFQH----QWQAFMA 699
Query: 987 ISNVIHETRAL-DINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCAS 1045
+ ++ + R L D+ LG+ AA RGENELWL + +++ L L P LAAVCA+
Sbjct: 700 LVEILQKFRGLEDLRPT---ELGQITAAFRGENELWLGLACQSQALNALDPHILAAVCAA 756
Query: 1046 LVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGM 1105
LV + + +W + PS V + L R ++ Q ++ P CLD++ G+
Sbjct: 757 LVVDNTRPDVWLK----FRPSAAVQQAVKPLRPIRRQLIQTQHRYDAPFPVCLDTELVGL 812
Query: 1106 VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMD 1165
VE WA G++W ++ +LD GDL R+LRRT+DLL+QIP +P + + L+KNA A +M+
Sbjct: 813 VEQWALGISWNDLCDATSLDAGDLVRILRRTVDLLSQIPYVPYLSEELKKNARRAEQLMN 872
Query: 1166 RPPISE 1171
R PIS+
Sbjct: 873 RFPISD 878
>gi|119513661|ref|ZP_01632665.1| Type III restriction enzyme, res subunit [Nodularia spumigena
CCY9414]
gi|119461690|gb|EAW42723.1| Type III restriction enzyme, res subunit [Nodularia spumigena
CCY9414]
Length = 872
Score = 593 bits (1529), Expect = e-166, Method: Compositional matrix adjust.
Identities = 386/1021 (37%), Positives = 551/1021 (53%), Gaps = 162/1021 (15%)
Query: 160 IDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKF 219
+D+FQ+ +I + G SVVV APT SGKTL+ E A ++ +R+FYTTPLKALSNQK
Sbjct: 1 MDQFQKDAIASLNSGRSVVVCAPTGSGKTLVGEYAIYRALSRGKRVFYTTPLKALSNQKL 60
Query: 220 REFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSESGLFDVDVIV 278
R+FRE FG + VGLLTGD +INR+A IL+MTTEI RNMLY + +G + L DV+ +V
Sbjct: 61 RDFREQFGYDQVGLLTGDISINRDAPILVMTTEIFRNMLYGTPIGQIGI--SLVDVEAVV 118
Query: 279 LDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSR 338
LDE HY++D RGTVWEE IIYCP+E+Q+ LSATVAN+D+L W+ ++HG T+LI S
Sbjct: 119 LDECHYMNDRQRGTVWEESIIYCPREIQLAALSATVANSDQLTDWLNRVHGPTDLIYSDF 178
Query: 339 RPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHAD 398
RPVPL +Y+ L PLL+E +N +L+ R RK D
Sbjct: 179 RPVPLEFYYCNPKGLFPLLNESKTKINPRLA--------------------NRGKRKQGD 218
Query: 399 MNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV 458
N R + P + TL L+ RDMLPAI+FIF+RRGCD AV
Sbjct: 219 RGRNG-------------------RPEAPGIAYTLSQLQQRDMLPAIYFIFSRRGCDKAV 259
Query: 459 QYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 518
+ D L++ E + + F P+A R I L +G+AAHHAG LP WK +E
Sbjct: 260 AEVGDLWLVNNDESQILREQIDNFLARNPEAGRSGQIAPLYRGIAAHHAGILPAWKGLVE 319
Query: 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578
ELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT SG L ++E QMAGRAGRRG
Sbjct: 320 ELFQQGLIKVVFATETLAAGINMPARTTVISTLSKRTDSGHRLLNASEFLQMAGRAGRRG 379
Query: 579 IDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDD 638
+D +GHVV VQTP+EG++E L + +PLVSQFT SYGMVLNLL +H
Sbjct: 380 MDLQGHVVTVQTPFEGSKEAAYLATSKPDPLVSQFTPSYGMVLNLLQ----IH------- 428
Query: 639 MKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKS 698
+LE+A++L+E+SFG Y+ + + +E+ ++Q + L +I+ A++
Sbjct: 429 --------TLEQAKELIERSFGQYMATVHLTPEYEEISELQTQLAQLHEQIA--AVNEHE 478
Query: 699 RRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQY 758
A Y++ L++ LK E++ + L+ + R +L +G L L L+
Sbjct: 479 L-----AVYEK---LRQRLKVERQLLSTLQEQAVENRQEEFVMMLSFAVSGTL--LSLKG 528
Query: 759 KDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYV 818
K+ V + AV +GK ++ Y +
Sbjct: 529 KNI-AVSIPITAVLVGKIPGGEA---------------------------------PYLI 554
Query: 819 ALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFG 878
LG DN WY T K + +Y P V + + P E LLL G+ L
Sbjct: 555 CLGQDNRWYVVTTKDVVDLY-AELPRVDVPEHIVPPPE---LLLKPGQSL---------- 600
Query: 879 GLWCMEGSLETWSWSLNVPVLSSLSESDE-VLHMSFEYHDAVENYKEQRTKVARLKKKIA 937
GS ET++ + +P ES E ++M E EQ ++V +++++
Sbjct: 601 -----RGSEETFAIAQRIP------ESGEGSIYMPPE-------VAEQLSRVTAVQEQL- 641
Query: 938 RTEGFKEYKKIVDTVKFTEEKIKRLKAR-------SKRLTKRIEQIEPSGWKEFLRISNV 990
E I + + KI + +AR + L ++E+ W+EF+ + +
Sbjct: 642 ------EANPIHQSGNVS--KIFKRRARYVELEAELEELQSQVEEHSQRHWEEFVNLIAI 693
Query: 991 IHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG 1050
+ + ALD V LG+ AAAIRGENELWL +V + L L P LAA A+LV E
Sbjct: 694 LQQFDALD--NLVPTKLGQIAAAIRGENELWLGLVFESGELEHLDPHHLAAAAAALVIET 751
Query: 1051 IKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWA 1110
+ ++ +E S V+ + L R +LQ ++ V +P L+ + +VE WA
Sbjct: 752 PR----PDSRVHFELSNEVVEALAKLRNIRRKIFQLQRRYNVALPIWLEFELIAIVEQWA 807
Query: 1111 SGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPIS 1170
G W E+ + LD+GD+ R+LRRT+DLL+QIP +P + + Q+NA A ++DR P++
Sbjct: 808 LGTPWTELCENTTLDEGDVVRILRRTLDLLSQIPHVPHLSKDFQRNAYRAMQLIDRFPVN 867
Query: 1171 E 1171
E
Sbjct: 868 E 868
>gi|428777026|ref|YP_007168813.1| DSH domain-containing protein [Halothece sp. PCC 7418]
gi|428691305|gb|AFZ44599.1| DSH domain protein [Halothece sp. PCC 7418]
Length = 884
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 368/1023 (35%), Positives = 533/1023 (52%), Gaps = 149/1023 (14%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L +++ F +D FQ +I A SVVVS PT SGKTL+ E A +A +R+FYTTP
Sbjct: 9 DLKTLFPFELDNFQIRAIAALEAKKSVVVSVPTGSGKTLVGEYAIHRALARGKRVFYTTP 68
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLY-QSVGMVSSES 269
LKALSNQK R+F+ETFG + VGLLTGD ++NR A +++MTTEI RNMLY S+G V +
Sbjct: 69 LKALSNQKLRDFQETFGSDQVGLLTGDISVNRNAGVVVMTTEIFRNMLYGTSIGEVGT-- 126
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L +V+ +VLDE HY++D +RGTVWEE IIYCPK VQ++ LSAT+ANA +L WI IHG
Sbjct: 127 SLENVEAVVLDECHYMNDPNRGTVWEESIIYCPKSVQLVALSATIANAGQLTDWINNIHG 186
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
TEL+ S RP+PL +YFS L PLL+++ +N +L KP K
Sbjct: 187 PTELVKSDHRPIPLEFYFSNPKGLFPLLNDQQTKINPRL------------KPKKKSNKT 234
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R + +S P + + L R+MLPAI+FIF
Sbjct: 235 R------------------------------VSKSDCPSLKAVVEQLAQREMLPAIYFIF 264
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD +VQ L +L+ E ++ L+ F +P+ R I+ L +G+AAHHAG
Sbjct: 265 SRRGCDQSVQQLNGVSLVTAEESQHIQQHLQNFLERHPEGARAGQIEPLTRGIAAHHAGV 324
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK +EELF GLVKVVFATETLAAG+NMPART V+SSLSKRT G L ++E Q
Sbjct: 325 LPAWKGLVEELFTHGLVKVVFATETLAAGVNMPARTTVISSLSKRTDQGHRLLRASEFLQ 384
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
M+GRAGRRG+D RG+VV VQT +EGA+E L +PLVSQFT +YGMVLNLL
Sbjct: 385 MSGRAGRRGMDERGNVVCVQTRFEGAKEAAYLATQKSDPLVSQFTPTYGMVLNLL----- 439
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
++++EA+ L+E+SF Y+ + ++ + + ++ +E + EI
Sbjct: 440 --------------QRQTIQEAKSLLERSFAEYLANQKLIPEQKAIAQLTQEITRIDFEI 485
Query: 690 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 749
+ +I R+ +++ LQ +LK E+R L R+ + R AL + + G
Sbjct: 486 A--SIPREY--------FQQYQKLQGQLKEERRILKYLDRQAQRDRAPALAAAVSEVRAG 535
Query: 750 HLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDT 809
L +L +Y V +PAV + K +
Sbjct: 536 DLLYLKGKYVT---VSSPLPAVLIDKVATAG----------------------------- 563
Query: 810 QDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLW 869
+P + L +DN WY T+ + + + P AL R L L G+
Sbjct: 564 ---QPPLLITLAADNRWYIATQGDVCAIGEVLLPESALTNI----RPPADLELKPGKRRK 616
Query: 870 EKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKV 929
+E ME V + EV + Q+ K+
Sbjct: 617 GDETTAEIAQR--MEN------------VTPPAVDPPEV--------------EAQKAKI 648
Query: 930 ARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISN 989
L+K++ +++ + + +K T + ++L+ ++ + + W+EF+ I
Sbjct: 649 KDLQKRL-NEHPLQQWGQPKEVIK-TYNRRQQLQEELEQHHSNTRENQSQHWREFIEICE 706
Query: 990 VIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
V+ L+ LGETAAAIRG+NELWL + LR+ +L PA LAA +L++E
Sbjct: 707 VLETFGGLENYKPT--SLGETAAAIRGDNELWLGLALRSGEFDELSPAYLAAASCALITE 764
Query: 1050 GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAW 1109
+ ++ S + P VI+ ++ L R ++Q +H V IP L+ G+VE W
Sbjct: 765 TPR----PDSESYFPPPMPVIHALSELRGVRRELFQVQRRHRVAIPLWLEPDLIGLVEQW 820
Query: 1110 ASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
G+ W E+ LD+GDL R+LRRT D L+QIP +P + L+ NA A M+R P+
Sbjct: 821 VEGIDWNELCEATTLDEGDLVRILRRTRDFLSQIPHVPHLAASLRTNARLAVEQMERFPV 880
Query: 1170 SEL 1172
E
Sbjct: 881 LEF 883
>gi|158337176|ref|YP_001518351.1| DEAD/DEAH box helicase [Acaryochloris marina MBIC11017]
gi|158307417|gb|ABW29034.1| DEAD/DEAH box-like helicase [Acaryochloris marina MBIC11017]
Length = 909
Score = 587 bits (1512), Expect = e-164, Method: Compositional matrix adjust.
Identities = 370/1026 (36%), Positives = 543/1026 (52%), Gaps = 151/1026 (14%)
Query: 147 IDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIF 206
I V E ++ +++D+FQ+ +I A SVVVSAPT SGKT++ E A + + +R+F
Sbjct: 3 ISVPEFQQLFPYQLDEFQQQAINALDANQSVVVSAPTGSGKTMVGEYAIYRALQHGQRVF 62
Query: 207 YTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVS 266
YTTPLKALSNQK R+F+ FGD VGLLTGD ++NR A IL+MTTEI RN+LY ++ V
Sbjct: 63 YTTPLKALSNQKLRDFQHMFGDQAVGLLTGDLSVNRSAPILVMTTEIFRNILYGTLTDVV 122
Query: 267 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326
+ S L V ++LDE HY++D RGTVWEE IIYCP ++Q+I LSATVANA +L W+
Sbjct: 123 NTS-LEGVTSVILDECHYMNDRQRGTVWEESIIYCPADIQLIALSATVANAQQLVDWMSW 181
Query: 327 IHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
+HG T+LI S RPVPL ++F+ L PLL++K +N +L
Sbjct: 182 VHGPTQLIESDWRPVPLAYFFANAKGLFPLLNQKHTALNPRL------------------ 223
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
+ ++KH +HQ RR+ P VI L HLR R+MLPAI+
Sbjct: 224 ---KAQAKKHHGH----------RHQ---------RRADSPDVIAVLQHLREREMLPAIY 261
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 506
FIF+R+GCD V+ NLL E +++++ ++ FR +PD R + G+AAHH
Sbjct: 262 FIFSRKGCDRTVESTAHLNLLTPAESAQMQIQIETFRQQHPDVGRPQQFAAIAHGIAAHH 321
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
AG LP WK+++EELFQ GL+KVVFATETLAAGINMPART V++SLSKRT G LT++E
Sbjct: 322 AGLLPQWKTWVEELFQAGLIKVVFATETLAAGINMPARTTVIASLSKRTDLGHRLLTASE 381
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
+ QMAGRAGRRG+D +G+V+ VQTP+EGA+E L G +PLVSQFT SYGMVLNLL
Sbjct: 382 VLQMAGRAGRRGMDTQGYVITVQTPFEGAKEAAYLATIGPDPLVSQFTPSYGMVLNLL-- 439
Query: 627 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLT 686
R+L+E+++L++QSFG Y+ S ++ + +
Sbjct: 440 -----------------QTRTLDESKRLIDQSFGQYIAS----------VQLSPQKQAIA 472
Query: 687 SEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDF 746
+ + + + E A K LQ+ LK E R L ++ + S L IL
Sbjct: 473 DLQQELTLLLQKLGTIDEGALKSYQKLQQRLKEELRLLKILDQQAQETLASELTLILDHI 532
Query: 747 ENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDD 806
E+G + L + K+ I F N + +
Sbjct: 533 ESGAI---------------------------LSFTPPKSKTPIAGVFVANIPSPGHF-- 563
Query: 807 YDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGE 866
Y V L +N W+ +A+GD + + + +
Sbjct: 564 --------PYLVCLSQNNHWFV------------------IARGDVMHLDGQLNRPTQAQ 597
Query: 867 MLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQR 926
L + ++ G +G + + VP S+ + EV+H + AVE+ +Q
Sbjct: 598 QLTVPPSLTKKGQ--TQQGDATSLQVAEQVPD-STWQPAPEVMHQQ-QRLQAVESQMQQH 653
Query: 927 TKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLR 986
A + F +++ V T++ ++L R + ++ + W+ F+
Sbjct: 654 PAHASRQDH----SKFARWQRRVTTLE------RQLHDRETKFNRQFQH----QWQAFMA 699
Query: 987 ISNVIHETRAL-DINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCAS 1045
+ ++ + R L D+ LG+ AA RGENELWL + +++ L L P LAAVCA+
Sbjct: 700 LVEILQKFRGLEDLRPT---ELGQITAAFRGENELWLGLACQSQALNTLDPHILAAVCAA 756
Query: 1046 LVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGM 1105
LV + + +W + PS TV + L R ++ Q ++ P CLD+ G+
Sbjct: 757 LVVDNTRPDVWLK----FRPSATVQQAVKPLRPIRRQLIQTQHRYEAPFPVCLDTDLVGL 812
Query: 1106 VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMD 1165
VE WA G++W ++ +LD GDL R+LRRT+DLL+QIP +P + + L+KNA A M+
Sbjct: 813 VEQWALGISWSDLCDATSLDAGDLVRILRRTVDLLSQIPYVPYLSEELKKNARRAEQPMN 872
Query: 1166 RPPISE 1171
R PIS+
Sbjct: 873 RFPISD 878
>gi|428303828|ref|YP_007140653.1| DSH domain-containing protein [Crinalium epipsammum PCC 9333]
gi|428245363|gb|AFZ11143.1| DSH domain protein [Crinalium epipsammum PCC 9333]
Length = 896
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 383/1027 (37%), Positives = 531/1027 (51%), Gaps = 152/1027 (14%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L +++ F +D+FQ +I AF G SVVV APT SGKTLI E A ++ R+FYTTPL
Sbjct: 12 LKTLFPFDLDEFQYQAIAAFDAGRSVVVCAPTGSGKTLIGEYAIYRALSRGGRVFYTTPL 71
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSESG 270
KALSNQK R+FR+ FG++ VGLLTGD ++NREA IL+MTTEI RNMLY + +G V +
Sbjct: 72 KALSNQKLRDFRQQFGNDMVGLLTGDISVNREAPILVMTTEIFRNMLYGTRIGEVGTS-- 129
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L V+ +VLDE HY++D RGTVWEE IIYCP E+Q++ LSATV+N+ L WI +HG
Sbjct: 130 LAHVETVVLDECHYMNDRQRGTVWEESIIYCPPEIQLVALSATVSNSQNLTAWISSVHGP 189
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
TELI S RPVPL +YF L PLLD+ K +N +L
Sbjct: 190 TELIYSDFRPVPLQFYFGNPKGLFPLLDDYKKKINPRLI--------------------- 228
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
+++ +D TS G+ R + P + + L RDMLPAI+FIF+
Sbjct: 229 --AKRKSD-------TSKGKGA----------RPETPALGFIVNQLAQRDMLPAIYFIFS 269
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCL 510
RRGCD AV+ L+ L++ E +E++ + F PDA R ++ L +G+AAHHAG L
Sbjct: 270 RRGCDQAVEELKGLMLVNRAETAELKQRIDDFLARNPDAGRAGQVEPLYRGIAAHHAGIL 329
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
P WK +EELF GLVKVVFATETLAAGINMPART V+S+LSKRT G L ++E QM
Sbjct: 330 PAWKGLVEELFGLGLVKVVFATETLAAGINMPARTTVISTLSKRTDDGHRLLKASEFLQM 389
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 630
AGRAGRRG+D G+VV +QT +EGA+E L A EPLVSQFT SYGMVLNLL
Sbjct: 390 AGRAGRRGMDTTGYVVTLQTRFEGAKEAAYLATASAEPLVSQFTPSYGMVLNLL------ 443
Query: 631 HLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS 690
LEEA++LVE+SF Y S + + + +E ++ S +
Sbjct: 444 -------------QTHELEEAQELVERSFAQYTASQHLKPQVQAIADLNRELQLIDSLLE 490
Query: 691 DDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGH 750
I+ ++ LQ LK E+R L+ + E + + L G
Sbjct: 491 PVNIE----------LLQKYEKLQGRLKEERRLLKILQHQAEEVQAKEISLGLLQANPGT 540
Query: 751 LPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQ 810
+ L +Y V +PAV + K
Sbjct: 541 ILSLKGKYVP---VSSPLPAVLVAKVAGAGQF---------------------------- 569
Query: 811 DVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWE 870
Y + LG DN WY T N + LP+ +L + E L E
Sbjct: 570 ----PYLLCLGKDNKWYVVTT------------NDVVGLHGKLPQLPSNLGVKDIEFL-E 612
Query: 871 KLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHM--SFEYHDAVENYKE--QR 926
+ F GS T + + +P S + + EV+ E A ++ Q
Sbjct: 613 SPPELTFKPGQSRSGSNVTDAIATMIPHASVPAVAPEVIAQLKQVEMLKAEVDHHPIWQW 672
Query: 927 TKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLR 986
+ L K+ +R G + EE KR + +L W+EF
Sbjct: 673 GNPSTLLKRQSRRMGIQ------------EEICKRQEMLQAKLAHH--------WQEFTD 712
Query: 987 ISNVIHETRAL-DINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCAS 1045
+ ++ AL D+N PLGE AAAIRG+NELWL + + + L +L P LAA +
Sbjct: 713 LIEILRRMGALQDLNPT---PLGEAAAAIRGDNELWLGLAITSGALDELDPHHLAAAVCA 769
Query: 1046 LVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGM 1105
LV+E + W N S + + V NV R +LQ ++ V +P L+ + G+
Sbjct: 770 LVTETARPDSWTNYSLSNQAVEALTEVRNV----RRQLFQLQRRYQVTLPVWLEYELVGI 825
Query: 1106 VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMD 1165
VE WA G+ W ++ + LD+GD+ R+LRRT+DLL+QIP +P + + LQ+NA+ A ++D
Sbjct: 826 VEQWALGVEWFDLCGNTNLDEGDIVRMLRRTVDLLSQIPHVPHISRSLQRNAIRAIQLID 885
Query: 1166 RPPISEL 1172
R P++E+
Sbjct: 886 RFPVNEV 892
>gi|254423688|ref|ZP_05037406.1| DSHCT domain family [Synechococcus sp. PCC 7335]
gi|196191177|gb|EDX86141.1| DSHCT domain family [Synechococcus sp. PCC 7335]
Length = 886
Score = 583 bits (1503), Expect = e-163, Method: Compositional matrix adjust.
Identities = 364/1022 (35%), Positives = 547/1022 (53%), Gaps = 148/1022 (14%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
+++ FR+D FQ +I A +G S++V APT SGKTLI E A + RR+FYTTPLKA
Sbjct: 6 TLFPFRLDDFQIDAIAALNQGQSIIVCAPTGSGKTLIGEYAIHRALEMGRRVFYTTPLKA 65
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLY-QSVGMVSSESGLF 272
LSNQK R+F++ FG+ +VGLLTGDS++NREA +++MTTEI RNMLY ++G V + L
Sbjct: 66 LSNQKLRDFQQAFGEESVGLLTGDSSVNREAPVVVMTTEIFRNMLYGTTIGEVGT--SLR 123
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 332
DV ++LDE HY++D RGTVWEE +IYCP E+Q++ LSAT+ N +L WI ++HG T
Sbjct: 124 DVQAVILDECHYMNDRQRGTVWEESVIYCPPEIQLVGLSATIENGGQLTDWINEVHGPTR 183
Query: 333 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
LI S RPVPL ++F+ + + PLL+ N+K S++ +K Y+ R+R
Sbjct: 184 LIYSDYRPVPLNFHFAVEKGIFPLLN------NQKTSIH------PRLKNYRKPPRRQRG 231
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+K A +V+ L+++DMLPAI+FIF+R+
Sbjct: 232 QKKKAGATLPGVVS----------------------------QLQAKDMLPAIYFIFSRK 263
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPI 512
GCD AVQ + NL+ E ++ + RF P+A+R ++ L +GVAAHHAG LP
Sbjct: 264 GCDKAVQAVASMNLVSAAEAELLKRRIDRFVERNPEAIRTNQLEPLYRGVAAHHAGILPA 323
Query: 513 WKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAG 572
WKS +EELFQ GL+KVVFATETLAAGINMPART V++SLSKRT SG L ++E QM+G
Sbjct: 324 WKSLVEELFQAGLIKVVFATETLAAGINMPARTTVIASLSKRTDSGHRLLHASEFLQMSG 383
Query: 573 RAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHL 632
RAGRRG+D GHVV V++P+EGA+E L A +PLVSQFT SYGMVLNLL +H
Sbjct: 384 RAGRRGMDVEGHVVTVESPFEGAKEAASLALAPPDPLVSQFTPSYGMVLNLLQ----VH- 438
Query: 633 SNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDD 692
+ EEA++L+E+SFG Y+ + + K + K++++ VL +++
Sbjct: 439 --------------TAEEAQELIERSFGQYLATLHLAPQKKAIAKLEQDIAVLQDQLA-- 482
Query: 693 AIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLP 752
+ EAA E L+ L+ E+R L+++ E + L+ + F
Sbjct: 483 --------YIDEAALAEYEKLRGWLREEERLLKILQQQAE-ESIGTLEPVAISFAMAGT- 532
Query: 753 FLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDV 812
L L+ K+ + V +PAV + K
Sbjct: 533 VLSLKGKNIK-VATPLPAVLVSKVPGPGQF------------------------------ 561
Query: 813 KPSYYVALGSDNTWYTFTEKWIKTV--YRIGFPNVALAQGDALPRETMSLLLDKGEMLWE 870
+ V LG++N WY T K + + G L D L + L+ G+
Sbjct: 562 --PFLVCLGANNRWYVATVKDVAALPERSAGTAGSRLRAADDL-TPPVDLIYSPGK---- 614
Query: 871 KLADSEFGGLWCMEGSLETWSWSLNVPVLSSL-SESDEVLHMSFEYHDAVENYKEQRTKV 929
+G+ + + + +P ++++ +++ EV KEQ+ K
Sbjct: 615 -----------SRKGNEVSAAVAAKIPEITAIETQAPEV--------------KEQQEKA 649
Query: 930 ARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISN 989
A + +K+A+ + + VK + +K + R RL K E W EF+ +
Sbjct: 650 AAVAQKLAQNP-VAQLENPKAVVKQQKRLLKLEEERRDRLQK-YENYTHHYWLEFVSLMQ 707
Query: 990 VIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
V+ + L+ NT +G+ AAIRG+NELWL M L + L+P Q AA CA ++ E
Sbjct: 708 VLEDFECLEENTPT--EMGQLCAAIRGDNELWLGMALASGEFDALEPQQFAAACAGILME 765
Query: 1050 GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAW 1109
+ W Y + V+ + L R + Q + ++IP L+ +VE W
Sbjct: 766 NNRSDTWIR----YHATRPVLEALGGLRSLRRRIFQAQRRQDIQIPVWLEEDLIALVEQW 821
Query: 1110 ASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
A W+ + + +LD+GD+ RLLRRT+D L+QIP +P + + ++ NA A+ +++R P+
Sbjct: 822 ALETEWQVLCDNTSLDEGDVVRLLRRTLDFLSQIPHVPYLSESVRSNARQAAYLINRFPV 881
Query: 1170 SE 1171
+E
Sbjct: 882 NE 883
>gi|434392251|ref|YP_007127198.1| DSH domain protein [Gloeocapsa sp. PCC 7428]
gi|428264092|gb|AFZ30038.1| DSH domain protein [Gloeocapsa sp. PCC 7428]
Length = 892
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 389/1023 (38%), Positives = 544/1023 (53%), Gaps = 145/1023 (14%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L I+ F++D+FQ ++I A SVVV APT SGKTLI E A ++ ++R+FYTTPL
Sbjct: 11 LERIFPFQLDEFQLAAIRALNANRSVVVCAPTGSGKTLIGEYAIYRALSRRKRVFYTTPL 70
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSESG 270
KALSNQK R+FR+ FG + VGLLTGD++INR+A I++MTTEI RNMLY + +G V +
Sbjct: 71 KALSNQKLRDFRDRFGADMVGLLTGDASINRDAPIVVMTTEIFRNMLYGTPIGEVGT--S 128
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L DV+ +VLDE HY++D RGTVWEE IIYCP +Q++ LSAT+AN+ +L WI Q+HG
Sbjct: 129 LVDVEAVVLDECHYMNDRQRGTVWEESIIYCPSTIQLVALSATIANSQQLTDWINQVHGP 188
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
TELI S RPVPL +YF L PLLD +N +L + KP S+
Sbjct: 189 TELIYSEFRPVPLEFYFCNPKGLFPLLDNSKSKINPRL----------KPKPGSGDASQA 238
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
R R++ R + P + T+ L ++DMLPAI+FIF+
Sbjct: 239 RGGRRNGA------------------------RLESPSLEYTISRLAAKDMLPAIYFIFS 274
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCL 510
RRGCD AV LE +L++ E +++ + F P+A R I+ L +G+AAHHAG L
Sbjct: 275 RRGCDQAVANLE-MSLVNSAEAAQLRQQIDEFLARNPEAGRAGQIEPLYRGIAAHHAGIL 333
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
P WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT G L +E QM
Sbjct: 334 PTWKGLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLSKRTDRGHRLLNPSEFLQM 393
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 630
AGRAGRRG+D GHVV +QTP+EGA+E L A +PLVSQFT SYGMVLNLL
Sbjct: 394 AGRAGRRGMDKIGHVVTLQTPFEGAKEAAYLATAQPDPLVSQFTPSYGMVLNLL------ 447
Query: 631 HLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS 690
+LEEAR+L+E+SFG Y+ + + + L +Q + + +++
Sbjct: 448 -------------QTHTLEEARELIERSFGQYLATLYLKPHYESLAHLQAQVAQIEAQL- 493
Query: 691 DDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGH 750
++ID + + A E L++ +K E++ L + + R L L +G
Sbjct: 494 -ESID------MEQVAKYE--KLRQRIKVERQLLKTLHEQAQEARVEQLGLTLSFAVSGT 544
Query: 751 LPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQ 810
L L L+ K +PAV + K +
Sbjct: 545 L--LSLRGKHVPTAT-PIPAVLVAKTPGAGQA---------------------------- 573
Query: 811 DVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWE 870
Y V LG DN WY + +Y P + LA D LP M L
Sbjct: 574 ----PYLVCLGQDNRWYVVMTSDVVDLY-AELPRLELA-SDLLPPAEMPL---------- 617
Query: 871 KLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVA 930
K S G+ ET + + +P ++ L+ + EVL Q+ KVA
Sbjct: 618 KPGQSR-------RGNQETVAIARQIPDVAQLNIAPEVL--------------AQQAKVA 656
Query: 931 RLKKKIARTEGFKEYKK-IVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISN 989
L+ A+ E +K T+ KI +L+A + Q+ W+EFL +
Sbjct: 657 ALE---AQLEAHPVHKSDNPATILKRRNKILQLQAEIVERQAELSQLSQHHWEEFLHLIE 713
Query: 990 VIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
++ L N V LG+ AAAIRG+NELWL + L + L P LAA A+LV+E
Sbjct: 714 ILQRFGCL--NELVPTHLGQVAAAIRGDNELWLGLALSSGEFDQLDPHHLAAAIAALVTE 771
Query: 1050 GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAW 1109
+ W Y ++ V + L R +LQ ++ V P L+ +VE W
Sbjct: 772 NTRPDSWVR----YTLASEVEEALAGLRSIRRQLFQLQRRYNVAFPIWLEYDLVALVEQW 827
Query: 1110 ASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
A G+ W E+ + +LD+GD+ RLLRRT+DLL+QIP +P + + LQ+NA A ++DR P+
Sbjct: 828 ALGVEWSELCANTSLDEGDVVRLLRRTLDLLSQIPHIPYLSEALQRNAYRAMQLLDRFPV 887
Query: 1170 SEL 1172
+E+
Sbjct: 888 NEI 890
>gi|440682616|ref|YP_007157411.1| DSH domain protein [Anabaena cylindrica PCC 7122]
gi|428679735|gb|AFZ58501.1| DSH domain protein [Anabaena cylindrica PCC 7122]
Length = 890
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 393/1025 (38%), Positives = 560/1025 (54%), Gaps = 152/1025 (14%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L SI+ F +D+FQ +I + G SVVV APT SGKTLI E A +A +R+FYTTP
Sbjct: 11 DLGSIFPFELDQFQLDAIASLNAGRSVVVCAPTGSGKTLIGEYAIYRALARGKRVFYTTP 70
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+FRE FG VGLLTGD++INR+A IL+MTTEI RNMLY + +G +
Sbjct: 71 LKALSNQKLRDFREKFGFEQVGLLTGDASINRDAPILVMTTEIFRNMLYGTPIGQIGIS- 129
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L DV+ +VLDE HY++D RGTVWEE IIYCP+EVQ++ LSATVAN+D+L W+ ++HG
Sbjct: 130 -LVDVEAVVLDECHYMNDRQRGTVWEESIIYCPREVQLVALSATVANSDQLTDWLNRVHG 188
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
T+LI S RPVPL +++ L PLL++ +N +L + KP K G R
Sbjct: 189 PTDLIYSDFRPVPLEFHYCNPKGLFPLLNDSNTKINPRLIKR-----GKKGKPEKGRGGR 243
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
+ P +I TL L RDMLPAI+FIF
Sbjct: 244 ----------------------------------PEAPSIIYTLSQLEQRDMLPAIYFIF 269
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD AV + D L++ E + + F PDA R I L +GVAAHHAG
Sbjct: 270 SRRGCDKAVAEVGDLWLVNNDESQILRRQIDDFLNRNPDAGRSGQIAPLYRGVAAHHAGI 329
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT +G L ++E Q
Sbjct: 330 LPAWKGLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLSKRTDNGHRLLKASEFLQ 389
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
M+GRAGRRG+D +G+VV VQTP+EGA+E L + +PLVSQFT SYGMVLNLL
Sbjct: 390 MSGRAGRRGMDLQGYVVTVQTPFEGAKEAAYLATSPADPLVSQFTPSYGMVLNLL----- 444
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
+LE AR+L+E+SFG Y+ + + DE+ +I+ E L +E+
Sbjct: 445 --------------QTHTLERARELIERSFGQYMATLHLRPEYDEIGEIEAELAKLQAEL 490
Query: 690 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 749
+D ID +E A E L++ LK E+ L+ + + R L +L +G
Sbjct: 491 AD--IDE------NELALYE--KLRQRLKVERHIFKTLQEQAQADRQEQLSMMLDFAISG 540
Query: 750 HLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDT 809
+ L L K+ + A+ +GK A S G
Sbjct: 541 TM--LSLNDKNMTAT-LPITAILVGK------------------------ATSPG----- 568
Query: 810 QDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLW 869
+ SY+V LG DN WY T + +Y P V ++ D LP ++ + +G+
Sbjct: 569 ---QTSYFVCLGKDNRWYVATTADVVDLY-AELPKVEVSP-DILPPSELA--IKRGQ--- 618
Query: 870 EKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKV 929
C+ GS ET + + ++P + E ++M E + ++
Sbjct: 619 ------------CVSGSEETLAIAQSIP------DPGEFMYMPPEVAE----------QL 650
Query: 930 ARLKKKIARTEGFKEYKKI-VDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRIS 988
+R+ A+ E ++ V T+ + L+A + + ++EQ W+EFL +
Sbjct: 651 SRVNAVQAQLENHPLHQSGNVATIFKRRARCVELEAELEEVQGQVEQQSQRHWEEFLNLI 710
Query: 989 NVIHETRALD--INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 1046
+++ + L+ I TQ LG+ AAAIRGENELWL +V+ + L +L P LAA A+L
Sbjct: 711 HILQQFGGLENLIPTQ----LGQMAAAIRGENELWLGLVIASGELDNLDPHHLAAAAAAL 766
Query: 1047 VSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMV 1106
V+E + ++ ++ S V + + L R ++Q ++ V +P L+ + +V
Sbjct: 767 VTETPR----PDSKVRFDLSNEVADALAKLRGIRRQLFQIQRRYNVALPIWLEFELIAIV 822
Query: 1107 EAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
E WA G W E+ + LD+GD+ RLLRRT+DLL+QIP +P V L++NA A ++DR
Sbjct: 823 EQWALGKEWVELCANTTLDEGDVVRLLRRTLDLLSQIPHVPYVQDSLRRNAQRAMQLIDR 882
Query: 1167 PPISE 1171
P++E
Sbjct: 883 FPVNE 887
>gi|443317292|ref|ZP_21046707.1| superfamily II RNA helicase [Leptolyngbya sp. PCC 6406]
gi|442783111|gb|ELR93036.1| superfamily II RNA helicase [Leptolyngbya sp. PCC 6406]
Length = 908
Score = 579 bits (1493), Expect = e-162, Method: Compositional matrix adjust.
Identities = 382/1059 (36%), Positives = 551/1059 (52%), Gaps = 192/1059 (18%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+LA ++ F +DKFQ ++ A G SVVV APT SGKTLI E A +AN +R+FYTTP
Sbjct: 3 DLAELFPFPLDKFQLDAVHALDEGKSVVVCAPTGSGKTLIGEYAIHRALANGKRVFYTTP 62
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+FRE FG + VGLLTGD+AINR+A +++MTTEI RNMLY + +G V +
Sbjct: 63 LKALSNQKLRDFREQFGFDQVGLLTGDTAINRDAPVVVMTTEIFRNMLYGTRIGEVGTS- 121
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L DV+ +VLDE HY++D RGTVWEE IIYCP E+Q++ LSATV N D+L W+ ++HG
Sbjct: 122 -LQDVEAVVLDECHYMNDRQRGTVWEESIIYCPPEIQLLALSATVENGDQLTDWLSKVHG 180
Query: 330 KTELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
TELI S+ RPVPL +++ L PLLD K M+ L + + +
Sbjct: 181 PTELIYSTFRPVPLDFHYCNGKGPGLGPLLDADQKEMHPILKKHQRR---------RQPQ 231
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
S RR+ R + Q+ LS+ L+ RDMLPAI+F
Sbjct: 232 SGRRDRRDGVSL----------QYVLSQ--------------------LQQRDMLPAIYF 261
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 507
IF+RRGCD AV + D +L++E E ++++ + F P+A R + L +G+AAHHA
Sbjct: 262 IFSRRGCDRAVNEIGDFSLVNEAEAAQLKGIIDDFLKHSPEAARSGQVDPLYRGIAAHHA 321
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
G LP WK +EELFQ+GL+KVVFATETLA GINMPART V+++LSKRT SG L ++E
Sbjct: 322 GILPAWKGLVEELFQQGLIKVVFATETLAVGINMPARTTVIANLSKRTDSGHRLLMASEF 381
Query: 568 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 627
QM+GRAGRRG+D RG+VV V+TP+EGA+E L G +PLVSQFT SYGMVLNLL
Sbjct: 382 LQMSGRAGRRGMDERGNVVTVETPFEGAKEAVYLATVGPDPLVSQFTPSYGMVLNLL--- 438
Query: 628 KVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTS 687
+LEEAR+L+E+SFG Y+ + +L + + ++
Sbjct: 439 ----------------QTHNLEEARELIERSFGQYLATLHLLPQQQAIAALK-------- 474
Query: 688 EISDDAIDRKSRRLLS--EAAYKEMANLQEELKAEKRFRTELRRR--------MELKRFS 737
D ++ + +L+ EA ++E L+ EKR L+++ M
Sbjct: 475 ----DTLEHQRAQLVGFDEAVLAAYEKVREHLREEKRLLKILQQQAAELLLGDMGAALAF 530
Query: 738 ALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALN 797
A+ + + H+P V +PAV + K
Sbjct: 531 AIAGTILSLKGKHIP-----------VADPIPAVLVTK---------------------- 557
Query: 798 RLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRET 857
AQ +G + Y V L N WY T + ++ +P + G P
Sbjct: 558 --AQGSG--------QFPYLVCLTQANQWYVVTVADVVGLHG-EYPRLVAVDGLTPP--- 603
Query: 858 MSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHD 917
+ + L G+ G+ T +P L ++
Sbjct: 604 IDMPLKPGQH---------------RTGNDITALIVHQIPQPPPLEDT------------ 636
Query: 918 AVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIE 977
KEQ +V L +++A T +++ +K +++RL+A + T + Q
Sbjct: 637 -APEVKEQLDRVRELDRQLA-THPARQWGNPKLLMK-RWRQVRRLEAELRDRTTALAQSS 693
Query: 978 PSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPA 1037
W+EF+ I V+ AL+ + PLGE AAAIRG+NELWLA+ L + L L P+
Sbjct: 694 DRYWQEFVNIMAVLTHFGALEADHPT--PLGEIAAAIRGDNELWLAIALASGELDHLSPS 751
Query: 1038 QLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCC 1097
QLAA CA+LV E + W N Y+PS +V++ + L R ++Q + V +P
Sbjct: 752 QLAAACAALVVENSRPDTWSN----YDPSASVLDALGGLRNQRRELFQIQRQEDVNVPIW 807
Query: 1098 LDSQFSGMVEAWA------------------------SGLTWREMMMDCALDDGDLARLL 1133
L+ G+VE WA G W ++ + +LD+GD+ R+L
Sbjct: 808 LEFDLIGIVERWADMGEGQLFTLPASNPEQPEAEDEGEGKDWPDLCGNTSLDEGDIVRIL 867
Query: 1134 RRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 1172
RRT+D L+QIP +P +D L+ A A +++R P++E+
Sbjct: 868 RRTLDFLSQIPHVPHIDDNLRTTARRAVALLNRFPVNEV 906
>gi|427418494|ref|ZP_18908677.1| superfamily II RNA helicase [Leptolyngbya sp. PCC 7375]
gi|425761207|gb|EKV02060.1| superfamily II RNA helicase [Leptolyngbya sp. PCC 7375]
Length = 907
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 365/1021 (35%), Positives = 529/1021 (51%), Gaps = 149/1021 (14%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
+++ F++D FQ +IEA +G SV+V APT SGKTL+ E A + RR+FYTTPLKA
Sbjct: 7 NLFPFQLDPFQVDAIEALNKGQSVIVCAPTGSGKTLVGEYAIHRAIHFNRRVFYTTPLKA 66
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG--L 271
LSNQK R+FRE FG N VGLLTGD +INR+A IL+MTTEI RNMLY G E G +
Sbjct: 67 LSNQKLRDFREQFGHNQVGLLTGDMSINRDAPILVMTTEIFRNMLY---GTTMGEVGDAV 123
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
DV ++LDE HY++D RGTVWEE IIYCP E+Q++ LSATVAN D+L WIG+IHG +
Sbjct: 124 QDVQAVILDECHYMNDRQRGTVWEESIIYCPPEIQLVGLSATVANGDQLTDWIGKIHGPS 183
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
+LI S RPVPL +F T + PLL+ K ++ +L K ++ R++
Sbjct: 184 QLIYSDFRPVPLNMHFGTGKGIFPLLNSKKTALHDQL------------KKHRKPPRRQK 231
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
+K A N + + L+ +DMLPAI+FIF+R
Sbjct: 232 GQKKKAMAAGNEFLVA---------------------------QLQQKDMLPAIFFIFSR 264
Query: 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLP 511
+GCD AVQ + +L++ E ++ + F P+A R ++ L +GVAAHHAG LP
Sbjct: 265 KGCDKAVQSISSLSLVNPAETRALKQRIDEFLTANPEAARAGQVEPLYRGVAAHHAGLLP 324
Query: 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMA 571
WK +EELFQ GL+KVVFATETLAAGINMPART V+SSLSKRT SG L ++E QM+
Sbjct: 325 AWKGLVEELFQAGLIKVVFATETLAAGINMPARTTVISSLSKRTDSGHRLLHASEFLQMS 384
Query: 572 GRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMH 631
GRAGRRG+D GHVV V+TP+EGA E L A +PLVSQFT SYGMVLNLL
Sbjct: 385 GRAGRRGMDVEGHVVTVETPFEGAREAGYLALAKPDPLVSQFTPSYGMVLNLL------- 437
Query: 632 LSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISD 691
SLEE R LVE+SFG Y+ + + + + ++ +++ +++
Sbjct: 438 ------------QTHSLEETRDLVERSFGQYLSTLHLTPQQQAINDVEHNIELIREQLAA 485
Query: 692 DAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHL 751
+ + E A L+E L+ E+R L + ++ + L L N +
Sbjct: 486 ----------IGDEQIAEYAKLKEHLREERR----LLKILDQQATETLTGDLHTVINFAI 531
Query: 752 PFLCLQYKDSE-GVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQ 810
L K V + +PAV + K +
Sbjct: 532 AGTVLSLKGKHIPVANPIPAVLVTKLQGPN------------------------------ 561
Query: 811 DVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWE 870
K Y V L DN W + + +Y + +A A +P + +++
Sbjct: 562 --KVPYLVCLTGDNQWLMAAPRDVFALYE-KYERIA-AVDHLIPPDALTMK--------- 608
Query: 871 KLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVA 930
G C G T + + VP L DE+ KEQR ++
Sbjct: 609 -------AGNTC-PGDETTAAVAQAVP--QELPTFDEL----------APEVKEQRDRML 648
Query: 931 RLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNV 990
++ ++ + ++ K +K ++++ L+A + + W+EFL + +
Sbjct: 649 SVEAQL-DSHPLNQFGKPKTLLK-KQQRLSTLEAELSDRQAKYNKYAGRYWQEFLNLMAI 706
Query: 991 IHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG 1050
+ L+ N F G+ AAAIRGENELW+++ L + L P Q AAVCA++V+E
Sbjct: 707 LENFGGLENNQPTNF--GKMAAAIRGENELWISLALGSGEFDHLPPHQFAAVCAAIVTEI 764
Query: 1051 IKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWA 1110
+ W Y S V + L R + Q ++ V +P L+ +VEAWA
Sbjct: 765 TRPDTWTQ----YRTSHAVTAALEGLRSTRRQIFQQQRRYQVTLPVSLEWNLIALVEAWA 820
Query: 1111 SGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPIS 1170
W E+ + +LD+GD+ R+LRRT+D+LAQIP +P + ++ A A+++++R P++
Sbjct: 821 LETEWNELCQNTSLDEGDVVRILRRTLDILAQIPHVPFLPSTVKSTARQAAHLLNRFPVN 880
Query: 1171 E 1171
E
Sbjct: 881 E 881
>gi|300864714|ref|ZP_07109568.1| DSH-like [Oscillatoria sp. PCC 6506]
gi|300337280|emb|CBN54716.1| DSH-like [Oscillatoria sp. PCC 6506]
Length = 899
Score = 577 bits (1488), Expect = e-161, Method: Compositional matrix adjust.
Identities = 376/1035 (36%), Positives = 543/1035 (52%), Gaps = 164/1035 (15%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L +++ F +D FQ+ +I A G SVVV APT SGKTLI E A + +R+FYTTP
Sbjct: 12 DLKTLFPFELDDFQQEAIAALQAGKSVVVCAPTGSGKTLIGEYAIYRALNRGKRVFYTTP 71
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+FR FG + VGLLTGD + NREA IL+MTTEI RNMLY + +G V +
Sbjct: 72 LKALSNQKLRDFRHQFGQDMVGLLTGDMSFNREAPILVMTTEIFRNMLYGTPIGEVGTS- 130
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L V+ +VLDE HY++D RGTVWEE IIYCP EVQ++ LSATVAN+D+L WIG++HG
Sbjct: 131 -LTGVEAVVLDECHYMNDRQRGTVWEESIIYCPAEVQLVALSATVANSDQLTDWIGRVHG 189
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
TELI S RPVPL ++F+ + L PLL+ G++
Sbjct: 190 PTELIYSDFRPVPLQFHFANQKGLFPLLE---------------------------AGTK 222
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
+ N+R +V Q + ++ +I VP + D L L+ RDMLPAI+FIF
Sbjct: 223 KVNAR---------LVPKKKQQKETRGNI------PVPNLPDILSGLQQRDMLPAIYFIF 267
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+R+GCD AV + + +L+ E E + + + F P+A R ++ L +GVAAHHAG
Sbjct: 268 SRKGCDRAVGEMGNLSLVTEKESASLRRIVDDFLERNPEARRAGQVEPLYQGVAAHHAGI 327
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK +EELF GL+KVVFATETLAAGINMPART V+S+LSKRT G L ++E Q
Sbjct: 328 LPAWKGLVEELFGMGLIKVVFATETLAAGINMPARTTVISTLSKRTDRGHRLLNASEFLQ 387
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
MAGRAGRRG+D G+VV VQTP+EGA+E L AG + L SQFT SYGMVLNLL
Sbjct: 388 MAGRAGRRGMDEVGYVVTVQTPFEGAKEAAYLATAGADALSSQFTPSYGMVLNLL----- 442
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
+LEEA++LVE+SFG Y+ S + L + Q E D+L E+
Sbjct: 443 --------------QTHTLEEAKELVERSFGQYI-STLHLQPQ------QAEIDILKREL 481
Query: 690 S--DDAIDRKSRRLLS-EAAYKEMANLQEELKAEKRFRTELRRRMELKR---------FS 737
+ +D + + S E LQ +K EKR L ++ E R F+
Sbjct: 482 GAIEAQLDSSGKNIASLEKLLANYEKLQGRVKEEKRILKTLEQQAEEIRLKDMAVAVAFA 541
Query: 738 ALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALN 797
+ +L + H+P ++PAV + K +
Sbjct: 542 VIGTVL-SLKGKHVP------TAKRPQAPALPAVLVAKIPGPGQA--------------- 579
Query: 798 RLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRET 857
Y V LG DN WY + +Y P +++ +P E
Sbjct: 580 -----------------PYLVCLGRDNRWYVVAISDVAGLY-AEIPRLSVVDSLGVPPE- 620
Query: 858 MSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHD 917
M++ L + C G+ +T + + +P + + + E +
Sbjct: 621 MAMRLGQ-----------------CRLGNEDTAAIARLIPEMPTPTPPPEAI-------- 655
Query: 918 AVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIE 977
Q+ ++A L++++ E+ +K + +K S R +++E+
Sbjct: 656 ------AQQQRIAALEQQL-ENHPLHEWGNPASLLKRQRRRGSLVKEISDR-QQQLEKKR 707
Query: 978 PSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPA 1037
W+EFL + ++ LD + LG+ AAIRG+NELWL + L + +L P
Sbjct: 708 ARYWEEFLNLIAILQSFGCLDGLMPTM--LGKACAAIRGDNELWLGLSLMSGEFNELDPH 765
Query: 1038 QLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH-RSSFLELQEKHGVEIPC 1096
LAA CA LV+E + W Y S V+ ++ L R ++Q +H V IP
Sbjct: 766 HLAAACAGLVTEVSRPDSWTR----YTLSPEVLEALDNLQRGLRRRVFQVQHRHDVAIPI 821
Query: 1097 CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKN 1156
L+ + +VE WA G+ W +++ + +LD+GD+ R+LRRT+D L+Q+P +P + + L+ N
Sbjct: 822 WLEREIITLVEQWALGVEWLDIVANTSLDEGDVVRILRRTLDFLSQVPHVPYISESLRSN 881
Query: 1157 AVDASNVMDRPPISE 1171
A A ++DR P++E
Sbjct: 882 AYRAMQLIDRFPVNE 896
>gi|434403322|ref|YP_007146207.1| superfamily II RNA helicase [Cylindrospermum stagnale PCC 7417]
gi|428257577|gb|AFZ23527.1| superfamily II RNA helicase [Cylindrospermum stagnale PCC 7417]
Length = 892
Score = 574 bits (1479), Expect = e-160, Method: Compositional matrix adjust.
Identities = 393/1025 (38%), Positives = 560/1025 (54%), Gaps = 148/1025 (14%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L S++ F +D+FQ+ +I + G SVVV APT SGKTL+ E A ++ +R+FYTTP
Sbjct: 11 DLGSVFPFELDQFQQDAIASLNAGRSVVVCAPTGSGKTLVGEYAIYRALSRGKRVFYTTP 70
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+FRE FG + VGLLTGD++INREA IL+MTTEI RNMLY + +G V
Sbjct: 71 LKALSNQKLRDFREKFGSDQVGLLTGDASINREAPILVMTTEIFRNMLYGTPIGQVG--I 128
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L DV+ +VLDE HY++D RGTVWEE IIYCP+EVQ++ LSATVAN+D+L W+ ++HG
Sbjct: 129 SLVDVEAVVLDECHYMNDRQRGTVWEESIIYCPREVQLVALSATVANSDQLTDWLNRVHG 188
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
T+LI S RPVPL ++F L PLL+E +N +LS
Sbjct: 189 PTDLIYSDFRPVPLEFHFCNPKGLFPLLNETKTKINARLS-------------------- 228
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
+R+ +K G+ + + R + P +I TL L RDMLPAI+FIF
Sbjct: 229 KRSGKK-------------GKFEHGRTG-----RPEAPGIIYTLSQLEQRDMLPAIYFIF 270
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD AV + D L++ E + + F P+A R I L +G+AAHHAG
Sbjct: 271 SRRGCDKAVAEVGDLWLVNNDESQILRRQIDDFLSRNPEAGRSGQIAPLYRGIAAHHAGI 330
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT +G L ++E Q
Sbjct: 331 LPAWKVLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLSKRTDNGHRLLKASEFLQ 390
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
M+GRAGRRG+D +GHVV VQTP+EGA+E L + +PLVSQFT SYGMVLNLL
Sbjct: 391 MSGRAGRRGMDLQGHVVTVQTPFEGAKEAAYLATSEADPLVSQFTPSYGMVLNLL----- 445
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
+L++ R+L+E+SFG Y+ + + +E+ +IQ E L +I
Sbjct: 446 --------------QTHTLDQTRELIERSFGQYMATLHLRPDYEEIAEIQAELTQLQEQI 491
Query: 690 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 749
+ A+D K A Y++ L++ LK E++ L+ + + R L +L +G
Sbjct: 492 A--AVDEKEL-----AVYEK---LRQRLKVERQILRTLQEQAQKDRQEQLVMMLDFAVSG 541
Query: 750 HLPFLCLQYKDSEGVEHSVP--AVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDY 807
L L KD + + ++P AV + K +A+ QS
Sbjct: 542 TL----LSLKD-KNITATLPITAVLVAK---------SPIAA----------GQS----- 572
Query: 808 DTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEM 867
Y V LG DN WY T + +Y P V + D LP L L +G+
Sbjct: 573 -------PYLVCLGRDNRWYVATSVDVVDLY-AELPRVEVPP-DMLP--PSELPLKRGQ- 620
Query: 868 LWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRT 927
+ G+ ET + + +P + +E L S E Q +
Sbjct: 621 --------------SIRGNEETAAIAQCIP------DPEEFLPTSPE-------VAAQLS 653
Query: 928 KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRI 987
+V +++++ T E K + L+A + L R+ Q W+EFL +
Sbjct: 654 RVTAVQEQL-ETHPLHEAGNAAAIFK-RRARCIELEAEIEELEGRVGQQSQRHWEEFLSL 711
Query: 988 SNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV 1047
++ + LD V LG+ AAAIRGENELW+ +V + L +L P LAA A+LV
Sbjct: 712 IEILQQFGGLD--NLVPTTLGQIAAAIRGENELWIGLVFASGELDNLDPHHLAAAAAALV 769
Query: 1048 SEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVE 1107
+E + ++ YE S V + L R ++Q ++ V +P L+ + +VE
Sbjct: 770 TETPR----PDSKVRYELSNEVAEALAKLRGIRRQMFQVQRRYNVALPIWLEFELIAIVE 825
Query: 1108 AWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRP 1167
WA G+ W E+ + LD+GD+ RLLRRT+DLL+QIP +P++ LQ+NA A ++DR
Sbjct: 826 QWALGMEWIELCENTTLDEGDVVRLLRRTLDLLSQIPHVPNLPDSLQRNAYRAMQLIDRF 885
Query: 1168 PISEL 1172
P++E+
Sbjct: 886 PVNEV 890
>gi|113476965|ref|YP_723026.1| DSH-like [Trichodesmium erythraeum IMS101]
gi|110168013|gb|ABG52553.1| DSH-like [Trichodesmium erythraeum IMS101]
Length = 905
Score = 574 bits (1479), Expect = e-160, Method: Compositional matrix adjust.
Identities = 378/1040 (36%), Positives = 547/1040 (52%), Gaps = 170/1040 (16%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L +++ F++D+FQ+ +I A G SVVV APT SGKTLI E A ++ +R+FYTTPL
Sbjct: 13 LKTLFPFQLDEFQKQAIAALNAGKSVVVCAPTGSGKTLIGEYAIYRALSRGQRVFYTTPL 72
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSESG 270
KALSNQK R+FR+ FG VGL+TGD+++NREA +L+MTTEI RNMLY + +G V +
Sbjct: 73 KALSNQKLRDFRKLFGPEKVGLVTGDTSVNREASVLVMTTEIFRNMLYGTHIGEVG--AS 130
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L V+ +VLDE HY++D RGTVWEE IIYCP E+Q++ LSATVAN+D+L WI ++HG
Sbjct: 131 LEKVEAVVLDECHYMNDRQRGTVWEESIIYCPPEIQLLALSATVANSDQLTDWILRVHGP 190
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
TELI S RPVPL + FS L LL+ K +N +L KP
Sbjct: 191 TELIYSDFRPVPLKFNFSNSKGLFSLLNSNQKRINPQL------------KP-------- 230
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
SR+ + + P + L L+ RDMLPAI+FIF+
Sbjct: 231 -KSRQPKTDKKDK--------------------KEEPALSTVLSQLQERDMLPAIYFIFS 269
Query: 451 RRGCDAAV---QYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 507
RRGC AV L + L++ E ++++ +++F PD + ++ L +G+AAHHA
Sbjct: 270 RRGCARAVAEIAQLSNLTLVNPEEAAKLQKLVQKFLQRNPDLGKSQQLEPLTRGIAAHHA 329
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
G LP+WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLSKRT G L +E
Sbjct: 330 GMLPVWKGLVEELFQQGLIKVVFATETLAAGINMPARTTVISSLSKRTDDGHRLLKPSEF 389
Query: 568 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 627
QMAGRAGRRG+D +G+VV VQT +EG +E L +G +PLVSQFT SYGMVLNLL
Sbjct: 390 LQMAGRAGRRGMDIQGYVVTVQTRFEGVKEAAYLATSGADPLVSQFTPSYGMVLNLL--- 446
Query: 628 KVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTS 687
+L+EA+ LVE+SFG Y+ + +L + E+ +KE L +
Sbjct: 447 ----------------QTHTLQEAKDLVERSFGQYLSTLSLLPERKEIELKEKELKALEN 490
Query: 688 EIS----DDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKR-------- 735
++ +D I+ + +LL A+Y++ L+ ++K EKR L+R+ E R
Sbjct: 491 KLGIYEDNDWINLE--QLL--ASYEK---LRGKVKEEKRLLRILQRQAEETRIREMSLSL 543
Query: 736 -FSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSF 794
F+ L +L + H+P + +PAV + K S
Sbjct: 544 SFAILGTVL-SLKGKHVP------TAKKSTAEPIPAVLVAKVPGSGQS------------ 584
Query: 795 ALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALP 854
SY + LG DN WY + T+ + FP +A +P
Sbjct: 585 --------------------SYSLCLGKDNRWYIVGAMDVMTL-QADFPRLAAVDYMEVP 623
Query: 855 RETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFE 914
E S L G+ C +G + + +P + + EVL
Sbjct: 624 EEMGSRL---GQ---------------CRKGDEISLVLAQQIPAVPLPVDPPEVL----- 660
Query: 915 YHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIE 974
Q K+A + + A KE+ +K +++ L+A + + +E
Sbjct: 661 ---------AQMQKLAICEAE-AEAHPLKEWGNPRTLIK-GWRRVEMLRAEIEDRQRELE 709
Query: 975 QIEPSGWKEFLRISNVIHETRALDINTQVIFP--LGETAAAIRGENELWLAMVLRNKILL 1032
W+EFL + ++ L + P +G+ AAIRG+NELWL +VL +
Sbjct: 710 DKLARHWQEFLHLIEILQYFGCL----HGVEPTEVGQACAAIRGDNELWLGLVLMSGSFD 765
Query: 1033 DLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGV 1092
+L P LA CA LV+E + W YE S V + L R ++Q +H V
Sbjct: 766 ELDPHHLATACAGLVTEITRPDSWTR----YELSVEVKEAMASLRNLRHQLFQVQHRHQV 821
Query: 1093 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 1152
+P L+ +VE WA G+ W E++ + +LD+GD+ R+LRRT+D L+QIP +P +
Sbjct: 822 ALPVWLERDLIALVEQWALGVEWEELVNNASLDEGDVVRMLRRTLDFLSQIPHVPCLSDA 881
Query: 1153 LQKNAVDASNVMDRPPISEL 1172
L++NA A ++DR P++E+
Sbjct: 882 LRRNAHRAMQLIDRFPVNEV 901
>gi|412992553|emb|CCO18533.1| putative DNA helicase [Bathycoccus prasinos]
Length = 1188
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 377/1118 (33%), Positives = 563/1118 (50%), Gaps = 158/1118 (14%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
++++ S Y F +D+FQR + + G S+VVSAPT SGKTLI E + + ++ YT
Sbjct: 134 LEKMESFYKFPLDEFQREATRVLIDGHSLVVSAPTGSGKTLIGETTIMNALMRGKKAIYT 193
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINRE-AQILIMTTEILRNMLYQSVGMVSS 267
TPLKALSNQK REF++ FG VGL TGD +N E A+I++MTTEILRNMLY S
Sbjct: 194 TPLKALSNQKLREFQKMFGKRKVGLKTGDVEVNAEKAEIMVMTTEILRNMLYSSAAGGDM 253
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
+ L DV V++LDEVHYL D RGTVWEE IIYCP +Q++CLSAT+ N D+L+GWI ++
Sbjct: 254 DKRLDDVGVVILDEVHYLGDAYRGTVWEETIIYCPSNIQLLCLSATIGNPDDLSGWIEEV 313
Query: 328 HG-------------------KTELITSSRRPVPLTWYFSTKT-----ALLPLLDEKGKH 363
+ + + S+ RPVPL W++S K L LL+ +G
Sbjct: 314 RRNGADNERAEENENEQLKSVQCKTLVSNYRPVPLNWFYSMKPNRDWPGLGYLLNSRGTK 373
Query: 364 MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 423
MN +E+ P+ + G + ++R + S + N ++RR
Sbjct: 374 MN------------AELYPFTEEGIQESSARYGGEQESYYNNYDNNINSRRDNDQKSMRR 421
Query: 424 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDEC-----EMSEVELA 478
VP V + L S DMLPA+WFIF+R+GCD AV YL C C E E+
Sbjct: 422 RLVPHVETAVGQLISADMLPAVWFIFSRKGCDQAVDYL--CRDAGACLVSREEQLEITKE 479
Query: 479 LKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 538
+ F DAVR+ I+ L GVA+HHAG LP WK +E LFQRGLVKVVFATETLAAG
Sbjct: 480 IDAFIASNRDAVRQEMIEPLKCGVASHHAGLLPAWKGLVEALFQRGLVKVVFATETLAAG 539
Query: 539 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 598
+NMPAR V+S+LSKR +G LTSNE FQMAGRAGRRG D+ G+VV +Q+P++G E+
Sbjct: 540 VNMPARCTVMSALSKRGDTGPRTLTSNEFFQMAGRAGRRGFDDVGYVVCLQSPFDGPEDA 599
Query: 599 CKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQS 658
L+ E L SQF SYGMVLNLL G K SL + R +VE+S
Sbjct: 600 FSLVSGEPENLKSQFAISYGMVLNLLRGDK------------------SLNQIRSIVEKS 641
Query: 659 FGNYVGSNVMLAAKDELCKIQKETDVL-----TSEISDDAIDRKSRRLLSEAAYKEMANL 713
FGNY+G L+ EL ++ + + L SEI D ID E+ + L
Sbjct: 642 FGNYLGGKARLSQMRELNRLLDKLNALKAQESKSEIIQDGID--------ESEWNRFVKL 693
Query: 714 QEELKAEKRFRTELRRRMELKRFSALK----DILKDFENG-HLPFLCLQYKDSEGVEHSV 768
+E L+ E+ L + E + +++ D L E G + + + ++ + SV
Sbjct: 694 EERLRVEQGLLELLESQSEETKVESMREDVWDALTLGEEGVKMIAVDVGWRVDLVGQSSV 753
Query: 769 PAVYLGKFD--SLDSSKLKNMAS--------INDSFALNRLAQSNGDDYDTQDVK----- 813
G D SL K +++ ++ F ++ +A+ + D+ D + V
Sbjct: 754 KGTTFGLLDDGSLVVEKEESVTEFFANEDVDVDGIFEIDYIAEEDPDE-DGEKVSRETIE 812
Query: 814 ---------------------PS---YYVALGSDNTWYTF-TEKWIKTVYRIGFPNVALA 848
PS + LG+D WY F K + T Y + +
Sbjct: 813 RRKLRGSLPVLVVSAQRPEEAPSPLGEFTGLGADGMWYRFDAHKIVSTSY------IGAS 866
Query: 849 QGDALP----RETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSE 904
+ +P RE+ + + W + + L+ G+ +T + + N+P
Sbjct: 867 SNETMPFTEIRESCGNPPSESSIRWRRSSK-----LYRANGNAKTSAAAANLPGTC---- 917
Query: 905 SDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKA 964
+ + E D + QR K+ ++ + ++ + K K +L
Sbjct: 918 --DAFSIFEEDADTASYLEAQRKKIEGIQIDLGELSNVGLLRREMKLQKKRRAKSDKLSE 975
Query: 965 RSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL---------DINTQVIFPLGETAAAIR 1015
R+++L RI + +GW +F+R+ +++ AL D I GE A R
Sbjct: 976 RTRKLEARIREYSAAGWDDFMRVVDILDHRNALVRVRKTSENDDEEIEILTFGEVCMAFR 1035
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 1075
GENELW+ VL + + + LA VC ++ S+ + ++ Y PS + ++
Sbjct: 1036 GENELWIGTVL-SALPETISVTSLAGVCGAMSSDANRAV-----NAYYGPSEELDTILAS 1089
Query: 1076 LDEHRSSFLELQEKHGVE-IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLR 1134
+LQ ++ P L + ++E WASG++W ++ D +L +GD+AR+ +
Sbjct: 1090 FVPDLEDIADLQYASRIDNAPLSLSQDLAALLEQWASGVSWSQIKTDTSLQEGDIARVFK 1149
Query: 1135 RTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 1172
RT +LLAQIP+ P V ++L+K A +A +++RPPIS+L
Sbjct: 1150 RTAELLAQIPRAPYVSEQLKKTAKEAERIVNRPPISDL 1187
>gi|428206722|ref|YP_007091075.1| DSH domain-containing protein [Chroococcidiopsis thermalis PCC 7203]
gi|428008643|gb|AFY87206.1| DSH domain protein [Chroococcidiopsis thermalis PCC 7203]
Length = 889
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 374/1022 (36%), Positives = 540/1022 (52%), Gaps = 149/1022 (14%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L SI+ F +D+FQR +I A SVVV APT SGKTLI E A ++ +R+FYTTPL
Sbjct: 12 LESIFPFELDEFQRQAIAALNANRSVVVCAPTGSGKTLIGEYAIYRALSRSKRVFYTTPL 71
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSESG 270
KALSNQK R+FR+ FG + VGLLTGD +INR+A IL+MTTEI RNMLY + +G V +
Sbjct: 72 KALSNQKLRDFRDRFGADLVGLLTGDVSINRDAPILVMTTEIFRNMLYGTPIGEVG--TS 129
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L V+ +VLDE HY++D RGTVWEE IIYCP ++Q++ LSAT+AN+D+L WI ++HG
Sbjct: 130 LEGVEAVVLDECHYMNDRQRGTVWEESIIYCPPDIQLVALSATIANSDQLTDWICRVHGP 189
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
TELI S RPVPL +YF + PLLD K +N +L +P K R+
Sbjct: 190 TELIYSEFRPVPLEFYFGNPKGIFPLLDPKTGKINPRL------------RPKKGSSDRK 237
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
+ R + P++IDT+ HL SRDMLPAI+FIF+
Sbjct: 238 QGP-----------------------------RPETPKLIDTVGHLYSRDMLPAIYFIFS 268
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCL 510
RRGCD AV+ L L++ E +++++ + F PDA R ++ L +G+AAHHAG L
Sbjct: 269 RRGCDKAVEELAGVTLVNLEEAAQLKIQIDEFLRRNPDAGRVGQVEPLYRGIAAHHAGIL 328
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
P WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT G L +E QM
Sbjct: 329 PAWKGLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLSKRTDRGHRLLNPSEFLQM 388
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 630
AGRAGRRG+D GHVV +QTP+EGA+E L A +PL+SQF SYGMVLNLL +
Sbjct: 389 AGRAGRRGMDKLGHVVTLQTPFEGAKEAVYLATAKPDPLMSQFAPSYGMVLNLLQ----I 444
Query: 631 HLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS 690
H +L EA++L+E+SFG Y+ + + D + +++ L +++
Sbjct: 445 H---------------NLAEAKELIERSFGQYLATLYLKPQYDAIAEMEDRLADLQTQMQ 489
Query: 691 DDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGH 750
DR L++ LK E++ L + R L + +G
Sbjct: 490 SVDEDR----------LNHYEKLRQRLKVERQLLKVLEEQALEARIEQLSLTINFAMSGT 539
Query: 751 LPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQ 810
L L L+ K + +PAV + K +
Sbjct: 540 L--LSLRGKHVQ-TSTPIPAVLVAKIPGSGQA---------------------------- 568
Query: 811 DVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWE 870
Y++ LG DN WY I ++ F + + + P E + L G+
Sbjct: 569 ----PYFICLGRDNRWYVAASSDIADLF-AEFARLDIPEHLMPPVE---MPLKPGQ---- 616
Query: 871 KLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVA 930
+G+ ET + + +P L + EVL EQ+ +V
Sbjct: 617 -----------ARKGNEETATIAAQIPDLPPWHAAPEVL--------------EQQHRVI 651
Query: 931 RLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNV 990
+++++ +K + +I +L+ + +E+ W+EFL + +
Sbjct: 652 AVQEQLT-AHPLHHLGNPASILK-RKTRIAQLQTEIEERQAELERYAHRHWEEFLHLMEI 709
Query: 991 IHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG 1050
+ ALD T LG+ AAA+RG+NELWL + L + L +L P LAA A+LV+E
Sbjct: 710 LQRFGALDDLTPT--NLGKVAAAVRGDNELWLGLALASGELDNLAPHHLAAAIAALVTET 767
Query: 1051 IKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWA 1110
+ W Y S V + + R +LQ ++ V IP L+ ++E W+
Sbjct: 768 PRPDSWVR----YLLSEEVDIALASIRPIRRQLFQLQRRYNVTIPIWLEYDLVALIEQWS 823
Query: 1111 SGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPIS 1170
G+ W ++ + +LD+GD+ RLLRRT+DLL+QIP +P + + L++NA A +MDR P++
Sbjct: 824 LGVEWTDLCANTSLDEGDVVRLLRRTLDLLSQIPHVPFLSESLRRNAYRAIQLMDRFPVN 883
Query: 1171 EL 1172
E+
Sbjct: 884 EV 885
>gi|298492674|ref|YP_003722851.1| DSH domain-containing protein ['Nostoc azollae' 0708]
gi|298234592|gb|ADI65728.1| DSH domain protein ['Nostoc azollae' 0708]
Length = 890
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 385/1026 (37%), Positives = 548/1026 (53%), Gaps = 156/1026 (15%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L SI+ F +D+FQ+ +I + G SVVV APT SGKTLI E A +A +R+FYTTPL
Sbjct: 12 LGSIFPFELDQFQQEAIASLNAGRSVVVCAPTGSGKTLIGEYAIYRALARGKRVFYTTPL 71
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSESG 270
KALSNQK R+FRE FG + VGLLTGD++INR+A IL+MTTEI RNMLY + +G +
Sbjct: 72 KALSNQKLRDFREKFGFDQVGLLTGDASINRDAPILVMTTEIFRNMLYGTPIGQIG--IS 129
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L DV+ +VLDE HY++D RGTVWEE IIYCP EVQ++ LSATVAN+D+L W+ ++HG
Sbjct: 130 LVDVEAVVLDECHYMNDRQRGTVWEESIIYCPHEVQLVALSATVANSDQLTDWLNRVHGP 189
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
T+LI S RPVPL + F L PLL+E +N +L
Sbjct: 190 TDLIYSDFRPVPLEFNFCNPKGLFPLLNESKTKINPRL---------------------- 227
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
+ + R + +I T+ L RDMLPAI+FIF+
Sbjct: 228 -----------------IKRGKKGPGEKGKGGRPEALSIIYTISQLEQRDMLPAIFFIFS 270
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCL 510
RRGCD AV + D L++ E + + F P+A R I L +GVAAHHAG L
Sbjct: 271 RRGCDKAVAEVGDLWLVNNDESQILRRQIDEFLARNPEAGRSGQIAPLYRGVAAHHAGIL 330
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
P WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT +G L ++E QM
Sbjct: 331 PAWKVLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLSKRTDNGHRLLKASEFLQM 390
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 630
+GRAGRRG+D +G+VV +QTP+EGA+E L + +PLVSQFT SYGMVLNLL
Sbjct: 391 SGRAGRRGMDLQGYVVTLQTPFEGAKEAAYLATSPADPLVSQFTPSYGMVLNLL------ 444
Query: 631 HLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS 690
+LE+AR+L+E+SFG Y+ + + DE+ +I+ E + +E +
Sbjct: 445 -------------QTHTLEQARELIERSFGQYMATLYLKPEYDEMGEIKAELAKIQAEFA 491
Query: 691 DDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGH 750
AID +E A E L++ LK E+ L+ + + R L +L +G
Sbjct: 492 --AIDE------NELALYE--KLRQRLKVERHILKTLQEQAQTDRQEQLSMMLDFAVSGT 541
Query: 751 LPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQ 810
L L KD + A++ + L A G
Sbjct: 542 L----LSLKDKSMI-----------------------ATLPITAVLVEKAPDVG------ 568
Query: 811 DVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWE 870
+ SY+V LG DN WY T + +Y P V ++ D LP L L +G+
Sbjct: 569 --QASYFVCLGQDNRWYVATVADVVDLY-AELPRVEVSH-DILP--PAELALKRGQ---- 618
Query: 871 KLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVA 930
C+ G+ ET + + ++P + E ++M E VE A
Sbjct: 619 -----------CVCGNQETAAIAQSIP------DPGEFMYMPPE---VVEQLARFNAVQA 658
Query: 931 RLKKKIARTEG-----FKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFL 985
+L+ G FK+ + V+ EE ++++ +S+R W++FL
Sbjct: 659 QLENHPLHQSGNIAKIFKDRARCVELEAELEELQEQVEQQSQR-----------HWEQFL 707
Query: 986 RISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCAS 1045
+ ++ + LD V LG+ AAAIRGENELWL + + + L L P LAA A+
Sbjct: 708 NLIQILQQFGGLD--NLVPTTLGQMAAAIRGENELWLGLAIASGELDSLDPHHLAAAAAA 765
Query: 1046 LVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGM 1105
LV+E + ++ ++ S+ V + + L R ++Q ++ V +P L+ + +
Sbjct: 766 LVTETPR----PDSKVHFDLSSEVADALAKLRGIRRQLFQIQRRYNVALPIWLEFELIAI 821
Query: 1106 VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMD 1165
+E WA G+ W ++ + LD+GD+ RLLRRT+DLL+QIP +P V L+KNA A ++D
Sbjct: 822 IEQWALGMDWVQLCANTTLDEGDVVRLLRRTLDLLSQIPHVPLVPDSLRKNAQRAMQLID 881
Query: 1166 RPPISE 1171
R P++E
Sbjct: 882 RFPVNE 887
>gi|282897088|ref|ZP_06305090.1| Type III restriction enzyme, res subunit [Raphidiopsis brookii D9]
gi|281197740|gb|EFA72634.1| Type III restriction enzyme, res subunit [Raphidiopsis brookii D9]
Length = 932
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 387/1045 (37%), Positives = 556/1045 (53%), Gaps = 152/1045 (14%)
Query: 131 RVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLI 190
RVE L N E+ +L SI+ F +D+FQ +I + G SVVV APT SGKTLI
Sbjct: 37 RVEVLVNNHTPSPLEI----DLQSIFPFELDQFQLDAIASLNGGRSVVVCAPTGSGKTLI 92
Query: 191 AEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMT 250
E A ++ +R+FYTTPLKALSNQK R+FRE FG VGLLTGD+++NREA I++MT
Sbjct: 93 GEYAIYRALSQGKRVFYTTPLKALSNQKLRDFREKFGFEQVGLLTGDASVNREAPIIVMT 152
Query: 251 TEILRNMLYQS-VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIIC 309
TEI RNMLY + +G + L +V+ +VLDE HY++D RGTVWEE IIYCP+EVQ++
Sbjct: 153 TEIFRNMLYGTPIGQIGV--SLTNVEAVVLDECHYMNDQQRGTVWEESIIYCPQEVQLVA 210
Query: 310 LSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLS 369
LSATV N+D+L W+ ++HG T+LI S RPVPL ++F L PLL+E +N +L
Sbjct: 211 LSATVDNSDQLTDWLNRVHGPTDLIYSDFRPVPLEFHFCNPKGLFPLLNESRTKINSRL- 269
Query: 370 LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 429
+K K G R +G R + P +
Sbjct: 270 ----------IKRGKKGIGER----------------GYGN------------RPEPPTI 291
Query: 430 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDA 489
+ TL L RDMLPAI+FIF+RRGCD AV + D L++ E + + + F P+A
Sbjct: 292 VYTLSQLSQRDMLPAIFFIFSRRGCDKAVSEVSDLWLVNNEESQILRVQIDEFLTRNPEA 351
Query: 490 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
R I L KG+AAHHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S
Sbjct: 352 GRSGQIAPLYKGIAAHHAGILPAWKLLVEELFQQGLIKVVFATETLAAGINMPARTTVIS 411
Query: 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
+LSKRT +G L ++E QM+GRAGRRG+D +GHVV +QTP+EGA E L + +PL
Sbjct: 412 TLSKRTDNGHRLLKASEFLQMSGRAGRRGMDRQGHVVTLQTPFEGAREAAYLATSPADPL 471
Query: 610 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVML 669
VSQFT SYGMVLNLL +LE+A++L+E+SFG Y+ + +
Sbjct: 472 VSQFTPSYGMVLNLL-------------------QTHTLEQAKELIERSFGQYMATLYLK 512
Query: 670 AAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRR 729
DE+ +I+ E + E+S ID L + L++ LK E L+
Sbjct: 513 PEYDEIEEIKAELTKIEEELS--VIDENEITLYEK--------LKQILKVELHIFRTLQE 562
Query: 730 RMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMAS 789
++ +R S L +L+ G L + L+ K++ +Y SK+
Sbjct: 563 QLREERESELYMMLEFAVKGTL--VSLRDKNTTATLPITAILY---------SKVP---- 607
Query: 790 INDSFALNRLAQSNGDDYDTQDVKP-SYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALA 848
D P SY + LG +N WY+ T I V+ V +
Sbjct: 608 ---------------------DTGPSSYLICLGKNNRWYSATSSDILEVH-AHISRVEVL 645
Query: 849 QGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEV 908
+ P E L L KG + G +T + +P ++ E
Sbjct: 646 ESIIPPIE---LGLKKG---------------YSWRGDAQTAEIADIIP------DATEF 681
Query: 909 LHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKR 968
L+M+ E + Q ++V ++ ++ + K + + + K LK+ +
Sbjct: 682 LYMTPELAN-------QLSRVVSIQSQMENNPVHQSGK--IGHIFKQKAKFLELKSYLEG 732
Query: 969 LTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRN 1028
L K+++Q W++FL + ++ ALD V LG+ AA IRGENELWL + + +
Sbjct: 733 LEKQVKQNSEQHWEQFLNLIRILQHFDALD--NLVPTYLGQMAATIRGENELWLGLAIDS 790
Query: 1029 KILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQE 1088
L +L P LAA A+LV+E + ++ ++ S V + ++ L R ++Q
Sbjct: 791 GELDNLDPHHLAAAIAALVTETPR----PDSRVSFDLSDEVGSALSNLRNIRRKLFQIQH 846
Query: 1089 KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPD 1148
++ V +P L+ + +VE WA G W ++ LD+GD+ RLLRRT+DLL+QIP P
Sbjct: 847 RYHVALPIWLEFELIAIVEQWALGTKWLQICAMTTLDEGDVVRLLRRTLDLLSQIPHAPF 906
Query: 1149 VDQRLQKNAVDASNVMDRPPISELA 1173
V + L+KNA A ++DR P++E+
Sbjct: 907 VSESLRKNAGRAMQLIDRFPVNEVV 931
>gi|282899895|ref|ZP_06307856.1| Type III restriction enzyme, res subunit [Cylindrospermopsis
raciborskii CS-505]
gi|281195165|gb|EFA70101.1| Type III restriction enzyme, res subunit [Cylindrospermopsis
raciborskii CS-505]
Length = 932
Score = 554 bits (1427), Expect = e-154, Method: Compositional matrix adjust.
Identities = 383/1049 (36%), Positives = 558/1049 (53%), Gaps = 158/1049 (15%)
Query: 131 RVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLI 190
RVE L N E+ +L SI+ F +D+FQ +I + G SVVV APT SGKTLI
Sbjct: 37 RVEVLVNNHTPSPLEI----DLQSIFPFELDQFQLDAIASLNAGRSVVVCAPTGSGKTLI 92
Query: 191 AEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMT 250
E A ++ +R+FYTTPLKALSNQK R+FRE FG + VGLLTGD+++NREA I++MT
Sbjct: 93 GEYAIYRALSQGKRVFYTTPLKALSNQKLRDFREKFGFDQVGLLTGDASVNREAPIIVMT 152
Query: 251 TEILRNMLYQS-VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIIC 309
TEI RNMLY + +G + L +V+ +VLDE HY++D RGTVWEE IIYCP+EVQ++
Sbjct: 153 TEIFRNMLYGTPIGQIGV--SLTNVEAVVLDECHYMNDQQRGTVWEESIIYCPQEVQLVA 210
Query: 310 LSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLS 369
LSATV N+D+L W+ ++HG T+LI S RPVPL ++F L PLL+E +N +L
Sbjct: 211 LSATVDNSDQLTDWLNRVHGPTDLIYSDFRPVPLEFHFCNPKGLFPLLNENKTKINSRL- 269
Query: 370 LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 429
+K K G R +G R + P +
Sbjct: 270 ----------IKRGKKGIGER----------------GYGN------------RPEPPTI 291
Query: 430 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDA 489
+ TL L RDMLPAI+FIF+RRGCD AV + D L++ E + + + F P+A
Sbjct: 292 VYTLSQLSERDMLPAIFFIFSRRGCDKAVSEVSDLWLVNNEESQILRVQIDEFLTRNPEA 351
Query: 490 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
R I L KG+AAHHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S
Sbjct: 352 GRSGQIAPLYKGIAAHHAGILPAWKLLVEELFQQGLIKVVFATETLAAGINMPARTTVIS 411
Query: 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
+LSKRT +G L ++E QM+GRAGRRG+D +GHVV +QTP+EGA E L + +PL
Sbjct: 412 TLSKRTDNGHRLLKASEFLQMSGRAGRRGMDKQGHVVTLQTPFEGAREAAYLATSPADPL 471
Query: 610 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVML 669
VSQFT SYGMVLNLL +LE+A++L+E+SFG Y+ + +
Sbjct: 472 VSQFTPSYGMVLNLL-------------------QTHTLEQAKELIERSFGQYMATLYLK 512
Query: 670 AAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRR 729
DE+ +I+ E + E+S AID L E+LK
Sbjct: 513 PEYDEIEEIKAELAKIEEELS--AIDENE------------ITLYEKLKQ--------IL 550
Query: 730 RMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMAS 789
++EL F L++ L++ L + +E +V L D ++ L A
Sbjct: 551 KVELHIFRTLQEQLREERESELYMM---------LEFAVKGTVLSLRDKNTTATLPMTAI 601
Query: 790 INDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVY----RIGFPNV 845
+ +++ ++ S+ + LG +N WY+ T + V+ R+ P
Sbjct: 602 L-----YSKVPETGPS---------SFIICLGKNNRWYSATNSDVIEVHAHISRVEVPES 647
Query: 846 ALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSES 905
+ + L L KG + G +T + +P ++
Sbjct: 648 IIP--------PIELGLKKG---------------YSWRGDAQTAEIADLIP------DT 678
Query: 906 DEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKAR 965
E L+M+ E + Q +V ++ ++ + + KI K E + LK+
Sbjct: 679 TEFLYMTPELAN-------QLNRVVSIQSQMEKN-SVHQSGKIGHIFKQKAEFVG-LKSY 729
Query: 966 SKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMV 1025
+ L K++++ W++FL + ++ ALD LG+ A+ IRGENELWL +
Sbjct: 730 LEGLEKKVKRNSEEHWEQFLNLIRILQHFDALD--NLAPTHLGQMASTIRGENELWLGLA 787
Query: 1026 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLE 1085
+ + L +L P LAA A+LV+E + ++ + S V + ++ L R +
Sbjct: 788 IDSGELDNLDPHHLAAAVAALVTETPR----PDSRVSFNLSNEVGSALSKLRNIRRKLFQ 843
Query: 1086 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK 1145
+Q ++ V +P L+ + +VE WA G W ++ LD+GD+ RLLRRT+DLL+QIP
Sbjct: 844 IQHRYHVALPIWLEFELIAIVEQWALGTKWLQLCAMTTLDEGDVVRLLRRTLDLLSQIPH 903
Query: 1146 LPDVDQRLQKNAVDASNVMDRPPISELAG 1174
P V + L+KNA A ++DR P++E+AG
Sbjct: 904 APFVSESLRKNAGRAMQLIDRFPVNEVAG 932
>gi|443311900|ref|ZP_21041522.1| superfamily II RNA helicase [Synechocystis sp. PCC 7509]
gi|442777975|gb|ELR88246.1| superfamily II RNA helicase [Synechocystis sp. PCC 7509]
Length = 893
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 383/1028 (37%), Positives = 538/1028 (52%), Gaps = 153/1028 (14%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L I+ F +D+FQ S+I A SVVV APT SGKTLI E A ++ +R+FYTTPL
Sbjct: 12 LNDIFPFELDEFQTSAIAALNADKSVVVCAPTGSGKTLIGEYAIHRALSRGKRVFYTTPL 71
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSESG 270
KALSNQK R+FR+ FG + VGLLTGD +INREA IL+MTTEI RNMLY + +G V +
Sbjct: 72 KALSNQKLRDFRKVFGADKVGLLTGDVSINREAPILVMTTEIFRNMLYGTPIGEVGT--S 129
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+ V+ +VLDE HY++D RGTVWEE IIYCP+E+Q++ LSATVAN+D+L WI +HG
Sbjct: 130 MQGVEAVVLDECHYMNDRQRGTVWEESIIYCPREIQLVALSATVANSDQLTDWINTVHGP 189
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
T+LI S RPVPL + F L PLL+ G +N +L
Sbjct: 190 TQLIYSDFRPVPLEFKFCNVKGLFPLLE--GGKINPRL---------------------- 225
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
R R D Q +K++ R + P +I L L SRDMLPAI+FIF+
Sbjct: 226 RPKRGSIDA------------QKAKDARRNGARPEAPSIIYLLNQLSSRDMLPAIYFIFS 273
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCL 510
RRGCD AV+ L L++ E ++++ + F PDA R ++ L +G+AAHHAG L
Sbjct: 274 RRGCDKAVEDLGTLTLVNPSEAAQLKWQIDEFLQRNPDAGRIGQVQPLYRGIAAHHAGIL 333
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
P WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLSKRT G L +E QM
Sbjct: 334 PAWKGLVEELFQQGLIKVVFATETLAAGINMPARTTVISSLSKRTDRGHRLLNGSEFLQM 393
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 630
AGRAGRRG+D RG+VV QTP+EGA+E L A +PLVSQFT +YGMVLNLL
Sbjct: 394 AGRAGRRGMDKRGYVVTAQTPFEGAKEAAYLATAKADPLVSQFTPTYGMVLNLL------ 447
Query: 631 HLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS 690
+LE+A++L+E+SFG Y+ +N+ L K Q E L
Sbjct: 448 -------------QTHTLEQAKELIERSFGQYI-ANLYL-------KPQYEAIALVQ--- 483
Query: 691 DDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGH 750
++A +QE+L + +L+ + L+ LK E
Sbjct: 484 -----------------AQLAQVQEQLASVD--------PAQLQNYEKLRQRLK-VETQL 517
Query: 751 LPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQ 810
L L Q D VE + +L S K KN+A+ A+ +A++ G
Sbjct: 518 LKTLVEQATDDR-VEQLSLTISFAMTGTLLSLKGKNVATSVPLTAV-LVAKTPGAG---- 571
Query: 811 DVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLD---KGEM 867
+ Y V LG++N WY T + ++ P + + Q D LP M + +G
Sbjct: 572 --QAPYLVCLGANNRWYVVTTSDVVDLH-AELPRLEI-QSDLLPPVEMPIKPGQSRRGNQ 627
Query: 868 LWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRT 927
+ +AD + + E + V +S+ E+ H E + +K +R
Sbjct: 628 ESQLIADLIPNSQAIIHTAPEVLAQQQRVQAVSAQIEA----HPLHELGNPATLFK-RRN 682
Query: 928 KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRI 987
K ++ +IA + +E+ W+EFL +
Sbjct: 683 KAMEIEAEIATRQA------------------------------ELEKTSQRHWEEFLHL 712
Query: 988 SNVIHETRALDINTQVIFP--LGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCAS 1045
++ L Q + P LG+ AAAIRG+NELW+ + L + +L P LAA A+
Sbjct: 713 IEILQRFGCL----QDLEPTDLGQVAAAIRGDNELWIGLALASGEFDELDPQCLAAAIAA 768
Query: 1046 LVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGM 1105
+V+E + W Y V + L R + +LQ ++ + +P L+ +
Sbjct: 769 IVTETPRPDTWVR----YTLPIPVEEALAGLRSTRRNLFQLQRRYNITLPIWLEYDLVAL 824
Query: 1106 VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMD 1165
+E WA G+ W E+ +LD+GD+ RLLRRT+DLL+QIP +P + LQ+NA A ++D
Sbjct: 825 LEQWALGVDWVELCSHTSLDEGDVVRLLRRTLDLLSQIPYVPHLPTSLQRNAYRAVQLID 884
Query: 1166 RPPISELA 1173
R P++E A
Sbjct: 885 RFPVNETA 892
>gi|254525983|ref|ZP_05138035.1| DSHCT domain family protein [Prochlorococcus marinus str. MIT 9202]
gi|221537407|gb|EEE39860.1| DSHCT domain family protein [Prochlorococcus marinus str. MIT 9202]
Length = 908
Score = 547 bits (1410), Expect = e-152, Method: Compositional matrix adjust.
Identities = 361/1031 (35%), Positives = 548/1031 (53%), Gaps = 159/1031 (15%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L + F +D FQ +I A G+SVV++APT SGKTLI E A +++ R+FYTTPL
Sbjct: 4 LEEYFPFPLDDFQLEAIRAINSGNSVVLTAPTGSGKTLIGEFAIYRGLSHDNRVFYTTPL 63
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKFR+F +G+NNVGLLTGD +INREA IL+MTTEI RNMLY + L
Sbjct: 64 KALSNQKFRDFANQYGENNVGLLTGDISINREAPILVMTTEIFRNMLYGEFD--EFDDPL 121
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+++ ++LDE HY++D RGTVWEE II+CP QII LSAT+ANAD+L WI ++HG T
Sbjct: 122 ENLESVILDECHYMNDPQRGTVWEETIIHCPSRTQIIALSATIANADQLQNWIEKVHGPT 181
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
LI S +RPVPL + F + L PLL+ KG
Sbjct: 182 VLINSDKRPVPLDFIFCSIKGLHPLLNNKGN----------------------------- 212
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
++ N + + Q + + I + + P + + L R+MLPAI+FIF+R
Sbjct: 213 ------GIHPNCKIWRAPKGQKIRGKVGRIMQPKSPSIGFVISKLAERNMLPAIYFIFSR 266
Query: 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGCL 510
RGCD A++ ++D L+ E S + L + +A+++ + + L +G+A+HHAG L
Sbjct: 267 RGCDKAIENIKDLTLVSYSEASMISQKLDVYLKNNQEAIKDKSQCEALKRGIASHHAGLL 326
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
P WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLSKRT G L S+E QM
Sbjct: 327 PAWKELVEELFQQGLIKVVFATETLAAGINMPARTTVISSLSKRTEDGHRLLFSSEFLQM 386
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 630
+GRAGRRG D +G+VV +QT +EGA+E L + L SQFT SYGMVLNLL
Sbjct: 387 SGRAGRRGKDTQGYVVTLQTRFEGAKEASALAISKPNSLESQFTPSYGMVLNLLQSY--- 443
Query: 631 HLSNESDDMKALQAGRSLEEARKLVEQSFGNYV------GSNVMLAAKD-ELCKIQKETD 683
+LE++++L+++SFG+++ G N++L D +L +++K
Sbjct: 444 ----------------TLEKSKELIKRSFGSFLYLGESSGENIILEKLDKDLIELKK--- 484
Query: 684 VLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDIL 743
+TS +S D AY+++ N LK E+R L ++ K + + L
Sbjct: 485 -ITSNVSWKDFD----------AYEKLRN---RLKEERRLLKILEKQSAEKLSEEITNAL 530
Query: 744 KDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMA--SINDSFALNRLAQ 801
E+G L + K + VP + K +S K+K++ +I++ F L
Sbjct: 531 PYIEDGSL----ISIKAPQMKRKIVPGLICKKI--YESQKIKSLLCLTIDNLFIL----- 579
Query: 802 SNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLL 861
+KPSY V++ +D +V G +P+ S
Sbjct: 580 ----------IKPSYIVSIFND-------------------LHVIDVSGLEVPKMYFSGE 610
Query: 862 LDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVEN 921
+ +G+ + + AD F + L+T + L VL+ + + + + V +
Sbjct: 611 VFRGDDISQCYADRIFE--VSKKNDLQTPQYDLTKEVLAQQQQINNL-------EETVTD 661
Query: 922 YKEQRTKVARLKKKIARTEGFKEYKK-IVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG 980
+ R ++ K+Y+K I+D E++I K K +E E
Sbjct: 662 HPAHR---------FGDSKKLKKYRKRIIDV----EQEINIRK-------KLLEDKENHN 701
Query: 981 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 1040
W+ F + +++ L N + +G+T AIR ENELW+ +VL + L DL P +LA
Sbjct: 702 WRTFTDLIQILNHFGCL--NDLELTEVGQTVGAIRSENELWIGLVLVSGYLDDLDPPELA 759
Query: 1041 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 1100
A+ ++ + + LW N ++PS VI+V N LD R Q K +EIP L++
Sbjct: 760 AIIQAICVDVRRPNLWCN----FKPSVKVIDVFNELDGLRKLVSFQQNKFHIEIPIYLET 815
Query: 1101 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDA 1160
+ +G++ WA G W++++ + +LD+GD+ R++RR+ID+L+Q+ V +L+ A A
Sbjct: 816 ELTGIISEWARGKKWKDLVFNTSLDEGDVVRIIRRSIDVLSQVQYCIGVSNKLKSKAKLA 875
Query: 1161 SNVMDRPPISE 1171
++R P+SE
Sbjct: 876 LKAINRFPVSE 886
>gi|91070166|gb|ABE11087.1| putative DNA helicase [uncultured Prochlorococcus marinus clone
HF10-11D6]
Length = 908
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 358/1030 (34%), Positives = 546/1030 (53%), Gaps = 157/1030 (15%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L + F +D FQ +I A G+SVV++APT SGKTLI E A ++++ R+FYTTPL
Sbjct: 4 LEEYFPFPLDDFQLEAIRAINSGNSVVLTAPTGSGKTLIGEFAIYRGLSHESRVFYTTPL 63
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKFR+F +GDN VGLLTGD +INREA IL+MTTEI RNMLY + L
Sbjct: 64 KALSNQKFRDFANQYGDNKVGLLTGDISINREAPILVMTTEIFRNMLYGEFD--EFDDPL 121
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+++ ++LDE HY++D RGTVWEE II+CP QII LSAT+ANAD+L WI ++HG T
Sbjct: 122 ENLESVILDECHYMNDPQRGTVWEETIIHCPTRTQIIALSATIANADQLQNWIEKVHGPT 181
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
LI S +RPVPL + F + L PLL+ KG
Sbjct: 182 VLINSDKRPVPLDFMFCSVKGLHPLLNNKGN----------------------------- 212
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
++ N + + Q + + I + + P + + L R+MLPAI+FIF+R
Sbjct: 213 ------GIHPNCKIWRAPKGQKIRGKVGRIMQPKSPSIGFVISKLTERNMLPAIYFIFSR 266
Query: 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGCL 510
RGCD A++ ++D L+ E + + L + +A+++ + + L +G+A+HHAG L
Sbjct: 267 RGCDKAIENIKDLTLVSYSEANMISQKLDVYLKNNQEAIKDKSQCEALKRGIASHHAGLL 326
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
P WK +EELFQ+GL+KVVFATETLAAGINMPART ++SSLSKRT G L S+E QM
Sbjct: 327 PAWKELVEELFQQGLIKVVFATETLAAGINMPARTTIISSLSKRTEDGHRLLFSSEFLQM 386
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 630
+GRAGRRG D +G+VV +QT +EGA+E L + L SQFT SYGMVLNLL
Sbjct: 387 SGRAGRRGKDTQGYVVTLQTRFEGAKEASTLAISKPNSLESQFTPSYGMVLNLLQSY--- 443
Query: 631 HLSNESDDMKALQAGRSLEEARKLVEQSFGNYV------GSNVMLAAKD-ELCKIQKETD 683
+LE++++L+++SFG+++ G N++L D +L +++K
Sbjct: 444 ----------------TLEKSKELIKRSFGSFLYLGESSGENIILENLDKDLIELKK--- 484
Query: 684 VLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDIL 743
+TS +S D AY+++ N LK E+R L ++ K + + L
Sbjct: 485 -ITSNVSWKDFD----------AYEKLKN---RLKEERRLLKILEKQAAEKLSEEITNAL 530
Query: 744 KDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM--ASINDSFALNRLAQ 801
++G L + K + VP + K +S K+K++ ++++ F L
Sbjct: 531 PYIKDGSL----ISIKAPQIKRKIVPGLICKKI--YESQKIKSLLCLTVDNLFIL----- 579
Query: 802 SNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLL 861
+KPSY V++ +D F G LP+ S
Sbjct: 580 ----------IKPSYIVSIFNDLDAIDFL-------------------GLELPKMYFSGE 610
Query: 862 LDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVEN 921
+ +G+ + + AD + L+T + L+ VL+ + + + + + +
Sbjct: 611 VFRGDDMSQCYADRILE--VSKKNDLQTPQYDLSKEVLAQQQQINNL-------EETIND 661
Query: 922 YKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGW 981
+ R +R KK K+IVD E++I K K +E E W
Sbjct: 662 HPAHRFGDSRKLKKYR--------KRIVD----VEQEIYMRK-------KLLEDKENHNW 702
Query: 982 KEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAA 1041
+ F + +++ L N + +G+T AIR ENELW+ +VL + L DL P +LAA
Sbjct: 703 RTFTDLIKILNHFGCL--NDLELTEVGQTVGAIRSENELWIGLVLVSGYLDDLDPPELAA 760
Query: 1042 VCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQ 1101
+ ++ + + LW N ++PS VI+V N LD R Q K +EIP L+++
Sbjct: 761 IIQAICVDIRRPNLWCN----FKPSLKVIDVFNELDGLRKLVASQQNKFHIEIPIYLETE 816
Query: 1102 FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDAS 1161
+G++ WA G W++++ + +LD+GD+ R++RR+ID+L+Q+ V +L+ A A
Sbjct: 817 LTGIISEWARGKKWKDLVFNTSLDEGDVVRIIRRSIDVLSQVQYCIGVSNKLKSKAKLAL 876
Query: 1162 NVMDRPPISE 1171
++R P+SE
Sbjct: 877 KAINRFPVSE 886
>gi|126696995|ref|YP_001091881.1| DNA helicase [Prochlorococcus marinus str. MIT 9301]
gi|126544038|gb|ABO18280.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9301]
Length = 908
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 357/1030 (34%), Positives = 545/1030 (52%), Gaps = 157/1030 (15%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L + F +D FQ +I A G+SVV++APT SGKTLI E A +++ R+FYTTPL
Sbjct: 4 LEEYFPFPLDDFQLEAIRAINSGNSVVLTAPTGSGKTLIGEFAIYRGLSHDSRVFYTTPL 63
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKFR+F +G+N VGLLTGD +INREA IL+MTTEI RNMLY + L
Sbjct: 64 KALSNQKFRDFANQYGENKVGLLTGDVSINREAPILVMTTEIFRNMLYGEFD--EFDDPL 121
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+++ ++LDE HY++D RGTVWEE II+CP QII LSAT+ANAD+L WI ++HG T
Sbjct: 122 ENLESVILDECHYMNDPQRGTVWEETIIHCPFRTQIIALSATIANADQLQNWIEKVHGPT 181
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
LI S +RPVPL + F + L PLL+ KG
Sbjct: 182 VLINSDKRPVPLDFIFCSIKGLHPLLNNKGN----------------------------- 212
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
++ N + + Q + + I + + P + + L R+MLPAI+FIF+R
Sbjct: 213 ------GIHPNCKIWRAPKGQKMRGKVGRIMQPKSPSIGFVISKLAERNMLPAIYFIFSR 266
Query: 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGCL 510
RGCD A++ ++D L+ E + + L + +A+++ + + L +G+A+HHAG L
Sbjct: 267 RGCDKAIENIKDLTLVSYSEANMISQKLDVYLKNNQEAIKDKSQCEALKRGIASHHAGLL 326
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
P WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLSKRT G L S+E QM
Sbjct: 327 PAWKELVEELFQQGLIKVVFATETLAAGINMPARTTVISSLSKRTEDGHRLLFSSEFLQM 386
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 630
+GRAGRRG D +G+VV +QT +EGA+E L + L SQFT SYGMVLNLL
Sbjct: 387 SGRAGRRGKDTQGYVVTLQTRFEGAKEASALAISKPNSLESQFTPSYGMVLNLLQSY--- 443
Query: 631 HLSNESDDMKALQAGRSLEEARKLVEQSFGNYV------GSNVMLAAKD-ELCKIQKETD 683
+LE++++L+++SFG+++ G N++L D +L +++K
Sbjct: 444 ----------------TLEKSKELIKRSFGSFLYLGESSGENIILENLDKDLIELKK--- 484
Query: 684 VLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDIL 743
+TS +S D AY+++ N LK E+R L R+ K + + L
Sbjct: 485 -ITSNVSWKDFD----------AYEKLKN---RLKEERRLLKILERQAAEKLSEEITNAL 530
Query: 744 KDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMA--SINDSFALNRLAQ 801
++G L + K + VP + K +S K+K++ +I++ F L
Sbjct: 531 PYIKDGSL----ISIKAPQIKRKIVPGLICKKI--YESQKIKSLLCLTIDNLFIL----- 579
Query: 802 SNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLL 861
+KPSY V++ +D + + +Y G + +GD + + +
Sbjct: 580 ----------IKPSYIVSIFNDLDAIDVSGLEMPKMYFSG----EVFRGDDMSQYYADRI 625
Query: 862 LDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVEN 921
L+ + + L+T + L + VL+ + + + + V +
Sbjct: 626 LEVSKKI-----------------DLQTPQYDLTMEVLAQQQQINNL-------EETVTD 661
Query: 922 YKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGW 981
+ R +R KK K+I+D E++I K K +E E W
Sbjct: 662 HPAHRFGDSRKLKKYR--------KRIIDV----EQEINMRK-------KLLEDKENHNW 702
Query: 982 KEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAA 1041
+ F + +++ L N + +G+T AIR ENELW+ +VL + L DL P LAA
Sbjct: 703 RTFTDLIKILNHFGCL--NNLELTEVGQTVGAIRSENELWIGLVLFSGYLDDLDPPDLAA 760
Query: 1042 VCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQ 1101
+ ++ + + LW N ++PS VI+V N LD R Q K +EIP L+++
Sbjct: 761 IIQAICVDVRRPNLWCN----FKPSLKVIDVFNELDGLRKLVASQQNKFHIEIPIYLETE 816
Query: 1102 FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDAS 1161
+G++ WA G W++++ + +LD+GD+ R++RR+ID+L+Q+ V +L+ A A
Sbjct: 817 LTGIISEWARGKKWKDLVFNTSLDEGDVVRIIRRSIDVLSQVQYCIGVSNKLKSKAKLAL 876
Query: 1162 NVMDRPPISE 1171
++R P+SE
Sbjct: 877 KAINRFPVSE 886
>gi|157414068|ref|YP_001484934.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9215]
gi|157388643|gb|ABV51348.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9215]
Length = 908
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 357/1032 (34%), Positives = 549/1032 (53%), Gaps = 161/1032 (15%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L + F +D FQ +I A G+SVV++APT SGKTLI E A +++ R+FYTTPL
Sbjct: 4 LEEYFPFPLDDFQLEAIRAINSGNSVVLTAPTGSGKTLIGEFAIYRGLSHDSRVFYTTPL 63
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKFR+F +G+N VGLLTGD +INREA IL+MTTEI RNMLY + L
Sbjct: 64 KALSNQKFRDFANQYGENKVGLLTGDISINREAPILVMTTEIFRNMLYGEFD--EFDDPL 121
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+++ ++LDE HY++D RGTVWEE II+CP QII LSAT+ANAD+L WI ++HG T
Sbjct: 122 ENLESVILDECHYMNDPQRGTVWEETIIHCPTRTQIIALSATIANADQLQNWIEKVHGPT 181
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
LI S +RPVPL + F + L PLL+ KG
Sbjct: 182 VLINSDKRPVPLDFIFCSVKGLHPLLNNKGN----------------------------- 212
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
++ N + + Q + + I + + P + + L R+MLPAI+FIF+R
Sbjct: 213 ------GIHPNCKIWRAPKGQKMRGKVGRIMQPKSPSIGFVISKLAERNMLPAIYFIFSR 266
Query: 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-AIKGLLKGVAAHHAGCL 510
RGCD A++ ++D L+ E + + L + +A+++ + L +G+A+HHAG L
Sbjct: 267 RGCDKAIENIKDLTLVSYSEANMISKKLDVYLKNNQEAIKDKFQCEALKRGIASHHAGLL 326
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
P WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLSKRT G L S+E QM
Sbjct: 327 PAWKELVEELFQQGLIKVVFATETLAAGINMPARTTVISSLSKRTEDGHRLLFSSEFLQM 386
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 630
+GRAGRRG D +G+VV +QT +EGA+E L + L SQFT SYGMVLNLL
Sbjct: 387 SGRAGRRGKDTQGYVVTLQTRFEGAKEASALAISKPNSLESQFTPSYGMVLNLLQSY--- 443
Query: 631 HLSNESDDMKALQAGRSLEEARKLVEQSFGNYV------GSNVMLAAKD-ELCKIQKETD 683
+LE++++L+++SFG+++ G N++L D +L +++K
Sbjct: 444 ----------------TLEKSKELIKRSFGSFLYLGESSGENIILENLDKDLIELKK--- 484
Query: 684 VLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDIL 743
+TS +S D AY+++ N LK E+R L ++ E K + + L
Sbjct: 485 -ITSNVSWQDFD----------AYEKLKN---RLKEERRLLKILEKQAEEKLSEEITNAL 530
Query: 744 KDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM--ASINDSFALNRLAQ 801
++G L + K + VP + K +S K+K++ ++++ F L
Sbjct: 531 PYIKDGSL----ISIKAPQIKRKIVPGLICKKI--YESQKIKSLLCLTVDNLFIL----- 579
Query: 802 SNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLL 861
+KPSY V++ +D + + +G +P+ S
Sbjct: 580 ----------IKPSYIVSIFND----------LDAIDVLGL---------EVPKMYFSGE 610
Query: 862 LDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVEN 921
+ +G+ + + AD + L+T + L + VL+ + + + + V +
Sbjct: 611 VFRGDDMSQCYADRILE--VSKKNDLQTPQYDLTMEVLAQQQQINNL-------EETVND 661
Query: 922 YKEQRTKVARLKKKIARTEGFKEY-KKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG 980
+ R ++ K+Y K+IVD E++I K K +E E
Sbjct: 662 HPAHR---------FGDSKKLKKYRKRIVD----VEQEIYMRK-------KLLEDKENHN 701
Query: 981 WKEFLRISNVIHETRAL-DINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 1039
W+ F + +++ L D+ + +G+T AIR ENELW+ +VL + L DL P +L
Sbjct: 702 WRTFTDLIKILNHFGCLSDLE---LTEVGQTVGAIRSENELWIGLVLVSGYLDDLDPPEL 758
Query: 1040 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
AA+ ++ + + LW N ++PS VI+V N LD R Q K +EIP L+
Sbjct: 759 AAIIQAICVDIRRPNLWCN----FKPSIKVIDVFNELDGLRKLVASQQNKFHIEIPIYLE 814
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 1159
++ +G++ WA G W++++ + +LD+GD+ R++RR+ID+L+Q+ V +L+ A
Sbjct: 815 TELTGIISEWARGKKWKDLVFNTSLDEGDVVRIIRRSIDVLSQVQYCIGVSNKLKSKAKL 874
Query: 1160 ASNVMDRPPISE 1171
A ++R P+SE
Sbjct: 875 ALKAINRFPVSE 886
>gi|123969201|ref|YP_001010059.1| DNA helicase [Prochlorococcus marinus str. AS9601]
gi|123199311|gb|ABM70952.1| putative DNA helicase [Prochlorococcus marinus str. AS9601]
Length = 908
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 359/1033 (34%), Positives = 547/1033 (52%), Gaps = 163/1033 (15%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L + F +D FQ +I A G+S+V++APT SGKTLI E A +++ R+FYTTPL
Sbjct: 4 LEEYFPFPLDDFQLEAIGAINSGNSLVLTAPTGSGKTLIGEFAIYRGLSHDSRVFYTTPL 63
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKFR+F +G+N VGLLTGD +INREA IL+MTTEI RNMLY + L
Sbjct: 64 KALSNQKFRDFTNQYGENKVGLLTGDISINREAPILVMTTEIFRNMLYGEFD--EFDDPL 121
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+++ ++LDE HY++D RGTVWEE II+CP QII LSAT+ANAD+L WI ++HG T
Sbjct: 122 ENLESVILDECHYMNDPQRGTVWEETIIHCPTRTQIIALSATIANADQLQNWIEKVHGPT 181
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEK--GKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
LI S +RPVPL + F + L PLL+ K G H N K
Sbjct: 182 VLINSDKRPVPLDFIFCSVKGLHPLLNNKSNGIHPNCK---------------------- 219
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
+ + Q + + I + + P + + L R+MLPAI+FIF
Sbjct: 220 ---------------IWRAPKGQKIRGKVGRIMQPKSPSISFVISKLAERNMLPAIYFIF 264
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAG 508
+RRGCD A++ ++D L+ E S + L+ + +A+++ + + L +G+A+HHAG
Sbjct: 265 SRRGCDKAIENIKDLTLVSYSEASMISQKLEFYLKNNQEAIKDKSQCEALKRGIASHHAG 324
Query: 509 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 568
LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLSKRT G L S+E
Sbjct: 325 LLPAWKELVEELFQQGLLKVVFATETLAAGINMPARTTVISSLSKRTEDGHRLLFSSEFL 384
Query: 569 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 628
QM+GRAGRRG D +G+VV +QT +EGA+E L + L S+FT SYGMVLNLL
Sbjct: 385 QMSGRAGRRGKDTQGYVVTLQTRFEGAKEASALAISKPNALESKFTPSYGMVLNLLQSY- 443
Query: 629 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV------GSNVMLAAKD-ELCKIQKE 681
+LE++++L+++SFG+++ G N++L D +L +++K
Sbjct: 444 ------------------TLEKSKELIKRSFGSFLYLGESSGENIILENLDKDLIELKK- 484
Query: 682 TDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKD 741
+TS +S D AY+++ N LK E+R L ++ K + +
Sbjct: 485 ---ITSNVSWKDFD----------AYEKLKN---RLKEERRLLKILEKQSAEKLSEEITN 528
Query: 742 ILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMA--SINDSFALNRL 799
L ++G L + K + VP + K +S K+K++ +I++ F L
Sbjct: 529 ALPYIKDGSL----ISIKAPQIKRKIVPGLICKKI--YESQKIKSLLCLTIDNLFIL--- 579
Query: 800 AQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMS 859
+KPSY V++ +D +V G +P+ S
Sbjct: 580 ------------IKPSYIVSIFND-------------------LDVIDVLGLEVPKMYFS 608
Query: 860 LLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAV 919
+ +G+ + + AD + L+T + L VL+ + + + + V
Sbjct: 609 GEVFRGDDMSQCYADQILE--VSKKNDLQTPQYDLTTEVLAQKQQINNL-------EETV 659
Query: 920 ENYKEQRTKVARLKKKIARTEGFKEYKK-IVDTVKFTEEKIKRLKARSKRLTKRIEQIEP 978
++ R ++ K+Y+K I+D EE+I K K +E E
Sbjct: 660 TDHPAHR---------FGDSKKLKKYRKRIIDV----EEEINIRK-------KLLEDKEN 699
Query: 979 SGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 1038
W+ F + +++ L N + +G+T AIR ENELW+ +VL + L DL P +
Sbjct: 700 HNWRTFTDLIKILNHFGCL--NDLDLTEVGQTVGAIRSENELWIGLVLVSGYLDDLDPPE 757
Query: 1039 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 1098
LAA+ ++ + + LW N ++PS VI+V N LD R Q K +EIP L
Sbjct: 758 LAAIIQAICVDVRRPNLWCN----FKPSLKVIDVFNELDGLRKLVSFQQNKFHIEIPIYL 813
Query: 1099 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 1158
+++ +G++ WA G W++++ + +LD+GD+ R++RR+ID+L+Q+ V +L+ A
Sbjct: 814 ETELTGIISEWARGKKWKDLVFNTSLDEGDVVRIIRRSIDVLSQVQYCIGVSNKLKSKAK 873
Query: 1159 DASNVMDRPPISE 1171
A ++R P+SE
Sbjct: 874 LALKAINRFPVSE 886
>gi|390439559|ref|ZP_10227950.1| putative helicase [Microcystis sp. T1-4]
gi|389837048|emb|CCI32074.1| putative helicase [Microcystis sp. T1-4]
Length = 975
Score = 534 bits (1376), Expect = e-148, Method: Compositional matrix adjust.
Identities = 382/1113 (34%), Positives = 542/1113 (48%), Gaps = 248/1113 (22%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
+I+ F++D FQ+S+I A G SVVV APT SGKTLI E A + +R+FYTTPLKA
Sbjct: 14 TIFPFKLDDFQQSAIAALAAGKSVVVCAPTGSGKTLIGEYAIYRALQRGKRVFYTTPLKA 73
Query: 214 LSNQKFREFRETFGDN-------------NVGLLTGDSAINREAQILIMTTEILRNMLYQ 260
LSNQKFR+F+E FG VGL+TGD IN A I++MTTEI RNMLYQ
Sbjct: 74 LSNQKFRDFQEKFGRTPTDGDEDSPLLFAEVGLITGDVVINPSALIVVMTTEIFRNMLYQ 133
Query: 261 S-VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADE 319
+ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSAT+ N E
Sbjct: 134 TPIGQVG--TSLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSATIGNPGE 191
Query: 320 LAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKL 368
L WI + ELI S RPVPL +YF K L PLLD K +N KL
Sbjct: 192 LTDWINWVRQLPQSGDNKQTSSCELINSDFRPVPLRFYFVNKEGLFPLLDPKQSKVNPKL 251
Query: 369 SLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ 428
+P GS RR ++R P
Sbjct: 252 ------------RPKAPRGSSRR-----------------------------LKREDCPT 270
Query: 429 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV------------- 475
+ + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 271 IASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLIFFLEDNP 330
Query: 476 ---ELALKRFRILYP------------------------------------------DAV 490
ELAL F + P V
Sbjct: 331 NLQELALSFFAVENPPLQQKLLAFFANNPQSDEQLLSLLTADPETKNQLFEFLASASQLV 390
Query: 491 REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
R ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPART V+S+
Sbjct: 391 RADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPARTTVISA 450
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 610
LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L A EPL
Sbjct: 451 LSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLATAQPEPLQ 510
Query: 611 SQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLA 670
S F SYGMVLNLL SLEEA+ L+E+SF Y+
Sbjct: 511 SCFAPSYGMVLNLL-------------------QKHSLEEAKDLLERSFAEYL------- 544
Query: 671 AKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRR 730
A+ +L +++ LT+E++ +D + + E + L+E+L+ E+R L +
Sbjct: 545 ARLKLSPERQQITALTTELAK--LDMELAGIEREQVFS-YEKLREKLREEERLYKILASQ 601
Query: 731 MELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASI 790
E ++ + L + G + L L+ K + V VPA+++ + +++ +
Sbjct: 602 AEAQKRQEIHLKLPNIPVGTI--LHLKGKHIK-VPVPVPAIFVNTLHG--AGQVRTL--- 653
Query: 791 NDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQ- 849
V LGSDN WY I + R GF +A A+
Sbjct: 654 ---------------------------VCLGSDNRWYLAAYADISEIDR-GF--LAPAEL 683
Query: 850 GDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSLNVPVLSSLS 903
G+ +P ++ L KGE + +AD + G+ V L + +
Sbjct: 684 GELIPPSLEAVSLGGWRKGEENTQAIADLIRQQVQGI-------------PPVAELETQA 730
Query: 904 ESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLK 963
+ E+++ H ++R RL K Y + + K + +IK K
Sbjct: 731 QRVEIINSQIAAHPL-----QKRKNPGRLMKLY--------YDRELARDKLHKTQIKYQK 777
Query: 964 ARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLA 1023
+S++ W+EFL + ++ E +ALD + PLGE AA IRGENELWL
Sbjct: 778 QQSRKSYY---------WEEFLNLIEILREFQALD--GYLPTPLGEAAATIRGENELWLG 826
Query: 1024 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV-------L 1076
+ + + L L P+QLAA +++++E + W N Y P VI+++ L
Sbjct: 827 LAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEENSPGL 882
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 1136
E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLRRT
Sbjct: 883 REVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLRRT 942
Query: 1137 IDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 943 VDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|78779944|ref|YP_398056.1| DEAD/DEAH box helicase-like [Prochlorococcus marinus str. MIT 9312]
gi|78713443|gb|ABB50620.1| DEAD/DEAH box helicase-like protein [Prochlorococcus marinus str. MIT
9312]
Length = 908
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 355/1030 (34%), Positives = 544/1030 (52%), Gaps = 157/1030 (15%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L + F +D FQ +I+A G+S+V++APT SGKTLI E A +++ R+FYTTPL
Sbjct: 4 LEEYFPFPLDDFQLEAIQAINSGNSLVLTAPTGSGKTLIGEFAIYRGLSHDSRVFYTTPL 63
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKFR+F +G+N VGLLTGD +INREA IL+MTTEI RNMLY + L
Sbjct: 64 KALSNQKFRDFASQYGENKVGLLTGDISINREAPILVMTTEIFRNMLYGEFD--EFDDPL 121
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+++ ++LDE HY++D RGTVWEE II+CP QII LSAT+ANAD+L WI ++HG T
Sbjct: 122 ENLESVILDECHYMNDPQRGTVWEETIIHCPSRTQIIALSATIANADQLQNWIEKVHGPT 181
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
LI S +RPVPL + F + L PLL+ KG
Sbjct: 182 VLINSDKRPVPLDFIFCSVKGLHPLLNNKGN----------------------------- 212
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
++ N + + Q + + I + + P + + L R+MLPAI+FIF+R
Sbjct: 213 ------GIHPNCKIWRAPKGQKKRGKVGRIMQPKSPSIGFLISKLAERNMLPAIYFIFSR 266
Query: 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGCL 510
RGCD A++ ++D L+ E + + L + +A+++ + + L +G+A+HHAG L
Sbjct: 267 RGCDKAIENIKDLTLVSYSEANMISQKLDLYLKNNQEAIKDKSQCEALKRGIASHHAGLL 326
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
P WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLSKRT G L S+E QM
Sbjct: 327 PAWKELVEELFQQGLIKVVFATETLAAGINMPARTTVISSLSKRTEDGHRLLFSSEFLQM 386
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 630
+GRAGRRG D +G+VV +QT +EGA+E L + L SQFT SYGMVLNLL
Sbjct: 387 SGRAGRRGKDTQGYVVTLQTRFEGAKEASALAISKPNSLESQFTPSYGMVLNLLQSY--- 443
Query: 631 HLSNESDDMKALQAGRSLEEARKLVEQSFGNYV------GSNVMLAAKD-ELCKIQKETD 683
+LE++++L+++SFG+++ G N +L D +L +++K
Sbjct: 444 ----------------TLEKSKELIKRSFGSFLYLDESSGDNAILENLDKDLIELKK--- 484
Query: 684 VLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDIL 743
+TS +S + D AY+++ N LK E+R L ++ K + + L
Sbjct: 485 -ITSNVSWNDFD----------AYEKLKN---RLKEERRLLKILEKQAAEKLSEEITNAL 530
Query: 744 KDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM--ASINDSFALNRLAQ 801
++G L + K + VP + K +S K+K++ +I++ F L
Sbjct: 531 PYIKDGSL----ISIKAPQIKRKIVPGLICKKI--YESQKIKSLLCLTIDNLFIL----- 579
Query: 802 SNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLL 861
+K SY V++ +D + + +G P+ S
Sbjct: 580 ----------IKASYIVSIFND----------LDAIDVLGL---------EAPKMYFSGE 610
Query: 862 LDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVEN 921
+ +G+ + + AD + L+T + L VL+ + + + + V +
Sbjct: 611 VVRGDDMSQCFADRILE--VSKKNDLQTPQYDLTTEVLAQRQQINAL-------EEKVTD 661
Query: 922 YKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGW 981
+ R +R KK K+IVD + E I++ R K E W
Sbjct: 662 HTAHRFGDSRKLKKYR--------KRIVDVEQ--EINIRKKLLRDK---------ENHNW 702
Query: 982 KEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAA 1041
+ F + +++ L N + +G+T AIR ENELW+ +VL + L DL P +LAA
Sbjct: 703 RTFTDLIQILNHFGCL--NDLELTEVGQTVCAIRSENELWIGLVLVSGYLDDLDPPELAA 760
Query: 1042 VCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQ 1101
+ ++ + + LW N ++PS V++V N LD R Q K +EIP L+ +
Sbjct: 761 IIQAICVDVRRPNLWCN----FKPSLKVLDVFNELDGLRKLVASQQNKFHIEIPIYLEIE 816
Query: 1102 FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDAS 1161
+G++ AWA G W++++ + +LD+GD+ R++RR+ID+L+Q+ V +L+ A A
Sbjct: 817 LTGIISAWARGEKWKDLVFNTSLDEGDVVRIIRRSIDVLSQVQYCIGVSNKLKSKAKLAL 876
Query: 1162 NVMDRPPISE 1171
++R P+SE
Sbjct: 877 KAINRFPVSE 886
>gi|218437327|ref|YP_002375656.1| DSH domain-containing protein [Cyanothece sp. PCC 7424]
gi|218170055|gb|ACK68788.1| DSH domain protein [Cyanothece sp. PCC 7424]
Length = 1003
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 386/1140 (33%), Positives = 541/1140 (47%), Gaps = 270/1140 (23%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L +++ F +D+FQ+ +I A +G SVVV APT SGKTL+ E A + +R+FYTTPL
Sbjct: 12 LKTLFPFELDQFQKDAIAALDKGKSVVVCAPTGSGKTLVGEYAIYRALYRGKRVFYTTPL 71
Query: 212 KALSNQKFREFRETFGDN-------NVGLLTGDSAINREAQILIMTTEILRNMLYQS-VG 263
KALSNQK R+F+E FG NVGL+TGD IN +A I++MTTEI RNMLY++ +G
Sbjct: 72 KALSNQKCRDFQEKFGQTPFLDYPVNVGLITGDIVINPDAPIVVMTTEIFRNMLYETPIG 131
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
V + L DV+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSAT+ N +EL W
Sbjct: 132 EVGT--SLEDVETVVLDECHYISDSGRGTVWEESIIYCPPSIQLVALSATIGNPEELTDW 189
Query: 324 IGQIHGKT-------------ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 370
I Q+ T EL+ S RPVPL++YFSTK L PLL+ N+K ++
Sbjct: 190 INQVRMSTRNRQFGSQSISTCELVNSDFRPVPLSFYFSTKQGLFPLLN------NQKTAI 243
Query: 371 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 430
N S + P K ++R ++R P ++
Sbjct: 244 N------SRLLPKKTNKKKQR-----------------------------VKREDCPTIL 268
Query: 431 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL-----------------LDECEMS 473
+ + L+S MLPAI+ IF+RRGCD AVQ L NL L E
Sbjct: 269 EIVEQLQSHQMLPAIYIIFSRRGCDQAVQSLGSINLVNSAEEKELCLRLLAFFLTELSYE 328
Query: 474 EVELALK----------------------------RFRILYPDA--------------VR 491
+V L+ F YP + +R
Sbjct: 329 QVSQVLRDLAQMNPQLHDHLYSFLANNPNGAEQLVEFFGAYPQSKIQLFQHIATQSKFIR 388
Query: 492 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
++ L +G+AAHHAG LP WK +E+LF+ GL+KVVFAT TL+AGINMPART V+S+L
Sbjct: 389 LDHLEPLTRGIAAHHAGILPAWKELVEQLFELGLIKVVFATSTLSAGINMPARTTVISAL 448
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
SKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L A EPL S
Sbjct: 449 SKRTDEGHSMLTPSEFLQIAGRAGRRGMDEVGHVVTVQTPFEGAKEAAYLGTAQPEPLKS 508
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 671
FT SYGMVLNLL SLE+A+ L+E SF Y+ A
Sbjct: 509 CFTPSYGMVLNLL-------------------QKHSLEQAKDLLECSFAEYL-------A 542
Query: 672 KDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRM 731
+ +L ++ LT+EI+ I+ +SEA L E LK EKR L+ +
Sbjct: 543 RLKLAPEKQAIVDLTTEITKLDIELAG---ISEAQINSYKKLNERLKHEKRLLKILKHQA 599
Query: 732 ELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIN 791
+ + + L+ + LG L +K +
Sbjct: 600 QTTKKQEIASQLEQLQ-------------------------LGNIVHLKGKHIKVSQPVK 634
Query: 792 DSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGD 851
F + L S K + V LG DN WY + V NV +
Sbjct: 635 AMF-VTALPGSG---------KSPFLVCLGEDNRWYIAANADVLDV------NV-----E 673
Query: 852 ALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLS-SLSESDEVLH 910
++P E +S E+ L + G W +G +T S + L E+ EV+
Sbjct: 674 SIPAEEIS------ELSLPNLEKVQLGP-W-RKGDEQTALMSQKISRYGEELLEAPEVI- 724
Query: 911 MSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKK---IVDTVKFTEEKIKRLKARSK 967
EQ+ +V L+ K+ +EYK +V+ + + L A
Sbjct: 725 -------------EQQQQVDILEAKL-NNHPLQEYKNPGSLVEKYHYRQHLQDELHAIQI 770
Query: 968 RLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLR 1027
+ +R + + W+EFL + ++ E AL+ T LGE AA IRG+NELWL +V
Sbjct: 771 KY-QRHQSRKSYYWEEFLNLIEILQEFNALEGYTPTA--LGEAAATIRGDNELWLGLVFM 827
Query: 1028 NKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN------------- 1074
+ L L+P LAA ++L++E ++ + S Y PS VIN+
Sbjct: 828 SGELDSLEPPHLAAAVSALITENLR----PDTVSYYPPSLEVINLFQHQPQGDLCLETLI 883
Query: 1075 -------------------------VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAW 1109
L E R ++ Q K + IP L+ + G+VEAW
Sbjct: 884 FRSHLIEKAKWLWFFDQLYRMGTAVSLQEIRRQLIQSQYKRMITIPVWLEDELMGLVEAW 943
Query: 1110 ASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
A G W+E+ +LD+GD+ RLLRRT+D+L QIP +P + + L++NA +A M R P+
Sbjct: 944 ARGTEWQELCEQTSLDEGDIVRLLRRTVDVLWQIPYIPRISEMLKQNAREAIRAMKRFPV 1003
>gi|307150235|ref|YP_003885619.1| DEAD/DEAH box helicase [Cyanothece sp. PCC 7822]
gi|306980463|gb|ADN12344.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7822]
Length = 1004
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 382/1140 (33%), Positives = 544/1140 (47%), Gaps = 269/1140 (23%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L +++ F +D+FQ+ +I A +G SVVV APT SGKTL+ E A +A +R+FYTTPL
Sbjct: 12 LETLFPFELDQFQKKAITALEQGKSVVVCAPTGSGKTLVGEYAIYRALARGKRVFYTTPL 71
Query: 212 KALSNQKFREFRETFGDN-------NVGLLTGDSAINREAQILIMTTEILRNMLYQS-VG 263
KALSNQK R+F+E FG +VGL+TGD IN +A I++MTTEI RNMLY++ +G
Sbjct: 72 KALSNQKCRDFQEKFGQTPFLAHRVDVGLITGDIVINPDAPIIVMTTEIFRNMLYETPIG 131
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSAT+ N +EL W
Sbjct: 132 EVG--TSLENVETVVLDECHYISDSGRGTVWEESIIYCPPTIQLVALSATIGNPEELTDW 189
Query: 324 IGQIHGK-------------TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 370
I ++ K ELI S RPVPL++YFSTK L PLL+ K +N +L
Sbjct: 190 INKVRQKRENKQFLEQKISTCELINSDFRPVPLSFYFSTKQGLFPLLNSKNTAINPRLL- 248
Query: 371 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 430
P K+ +RR IRR + P ++
Sbjct: 249 -----------PKKNQKKQRR-----------------------------IRREECPTIL 268
Query: 431 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI------ 484
+ + L+ MLPAI+ IF+RRGCD A+Q L NL++ E E+ L F +
Sbjct: 269 EIVEQLQFGQMLPAIYVIFSRRGCDQAIQSLGSLNLVNREEEKELCWRLLVFFLAENASL 328
Query: 485 ------------------LY------PDAVR--------EPAIKG--------------- 497
+Y PDA +P IK
Sbjct: 329 QEQLLNYFAKNNPDLRDKIYSFLANNPDATEQLLEILQTQPEIKSQLFQYLASESKFIRL 388
Query: 498 -----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
L +G+AAHHAG LP WK +E+LF+ GL+KVVFAT TL+AGINMPART V+S+LS
Sbjct: 389 DHLEPLTRGIAAHHAGILPAWKELVEKLFELGLIKVVFATATLSAGINMPARTTVISALS 448
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
KRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L A EPL S
Sbjct: 449 KRTDEGHSMLTPSEFLQIAGRAGRRGMDQLGHVVTVQTPFEGAKEAAYLATAQPEPLKSC 508
Query: 613 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 672
FT SYGMVLNLL SLE+A+ L+E SF Y+ + K
Sbjct: 509 FTPSYGMVLNLL-------------------QKHSLEQAKDLLECSFAEYLARLKLAPEK 549
Query: 673 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 732
+ ++ E L E++ +SE + E L+ EKR LR + +
Sbjct: 550 QAIIELTTELTKLNIELAG----------ISEGQINSYKKINETLREEKRLLKILRHQAQ 599
Query: 733 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 792
R + + L+ + G + L ++ V V AV +G
Sbjct: 600 TNRKNEIVTRLEQLQAGKIVHLKGKHIK---VSEPVTAVLIGSIP--------------- 641
Query: 793 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA 852
+G D +V LG DN WY I + I ++ L++
Sbjct: 642 ---------GSGKSPD--------FVCLGEDNRWYIAA---IADLLDINPGSIPLSEIAE 681
Query: 853 LPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMS 912
+P L+K ++ G W +G +T S + + E++ S
Sbjct: 682 IPLPN----LEKVQL-----------GPW-RKGDEKTAKLSQQIK-----GYAQELVEES 720
Query: 913 FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYK---KIVDTVKFTEEKIKRLKARSKRL 969
+ EQ+ +V L+ K+ ++YK +I++ + ++ + L A R
Sbjct: 721 Y--------LIEQQQQVEILEAKL-NNHPLQQYKNPGQILEKFEDRQQLQEELHAIQIRY 771
Query: 970 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 1029
+R + + W+EFL + ++ + ALD T + LGE AA IRG+NELW+ +VL +
Sbjct: 772 -QRHQSKKSYYWEEFLHLIEILQQFNALDGYTPTL--LGEAAATIRGDNELWVGLVLMSG 828
Query: 1030 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN--------------- 1074
L L+P LAA ++L++E ++ + S Y PS VI V
Sbjct: 829 ELEQLEPPHLAAAVSALITETLR----PDTMSYYPPSLQVIEVFQRQPKGEETLEILILR 884
Query: 1075 -------------------------VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAW 1109
L E R + Q + + IP L+ + G+VEAW
Sbjct: 885 AHLAKEAYWLWFFAVLYRLVKGGPVSLQETRRQLFQSQRQKMITIPVWLEDELMGLVEAW 944
Query: 1110 ASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
A G W+++ +LD+GDL RLLRRT+DLL QIP +P V L++NA +A M R P+
Sbjct: 945 ARGTEWQDLCDATSLDEGDLVRLLRRTVDLLWQIPYIPGVSAMLRQNAKEAIIAMKRFPV 1004
>gi|257059185|ref|YP_003137073.1| DSH domain-containing protein [Cyanothece sp. PCC 8802]
gi|256589351|gb|ACV00238.1| DSH domain protein [Cyanothece sp. PCC 8802]
Length = 967
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 373/1100 (33%), Positives = 529/1100 (48%), Gaps = 226/1100 (20%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
LA+++ F +D FQ+ +I A RG SVV+ APT SGKT+I E A + +R+FYTTPL
Sbjct: 12 LATLFPFELDGFQKDAIAALARGKSVVICAPTGSGKTVIGEYAIYHALEQGKRVFYTTPL 71
Query: 212 KALSNQKFREFRETFG---DNN-VGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVS 266
KALSNQKFR+F++ F DN+ VGL+TGD+ IN A I+IMTTEI RNMLY++ +G V
Sbjct: 72 KALSNQKFRDFQDKFSQTEDNSLVGLITGDTVINANAAIVIMTTEIFRNMLYETPIGQVG 131
Query: 267 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326
+ L +V ++LDE HY+SD RGTVWEE IIYCP +Q++ LSAT+ N ++L WI Q
Sbjct: 132 --TSLENVATVILDECHYISDRGRGTVWEESIIYCPPNIQLVALSATIGNPEQLTDWINQ 189
Query: 327 IH-------------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYL 373
+ ELI S RPVPL ++FSTK L PLL+ K +N +L
Sbjct: 190 VRLTAPGVDPKSDAVSLCELINSDFRPVPLRFFFSTKKGLAPLLNPKQTALNPRLK---- 245
Query: 374 QLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTL 433
+K +++R ++R P ++ +
Sbjct: 246 ---------FKGNPNKKRR----------------------------LKREDCPSLLTVI 268
Query: 434 WHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI--------- 484
L +D+LPAI+ IF+RRGCD +VQ LE L++ E ++ L F +
Sbjct: 269 KQLEKQDLLPAIYVIFSRRGCDQSVQRLEGITLVNPEEAHALQYNLLTFFLAENPRLQES 328
Query: 485 -----------LY-----------PDA--------------------------VREPAIK 496
LY PDA VR ++
Sbjct: 329 LLEAVKTENPPLYQPLLDFLSSPIPDADLFDYLARDQETKLHLFQLLATTSQLVRSDQLE 388
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+A HHAG LP+WK +E+LF+ GLVKVVFAT TL+AGINMPART V+S+LSKRT
Sbjct: 389 PLTRGIAVHHAGILPVWKELVEQLFEAGLVKVVFATATLSAGINMPARTTVISALSKRTD 448
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
+G LT +E Q+AGRAGRRG+D G+VV VQTP+EGA+E L AG EPL S FT S
Sbjct: 449 TGHGMLTPSEFLQIAGRAGRRGMDEVGYVVTVQTPFEGAQEAAFLATAGSEPLKSCFTPS 508
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELC 676
YGMVLNLL +L EA+ L+E+SF Y+ AK ++
Sbjct: 509 YGMVLNLL-------------------QKHTLNEAKHLLERSFAEYL-------AKLKIE 542
Query: 677 KIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRF 736
Q+ LT+E++ + LSE+ L+ LK E+R L + E R
Sbjct: 543 PEQQAIAALTTELTQLDMALAG---LSESELFGYEKLKARLKEEQRLLKLLEEQAEETRK 599
Query: 737 SALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFAL 796
+ +L G L +L GK + + +L +
Sbjct: 600 QQIFPLLAKLNTGDLLYLK------------------GKHLKVATPQLAVLVG------- 634
Query: 797 NRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRE 856
+ +G D ++ LG DN WY I + P +L Q LP +
Sbjct: 635 --MVPGSGQAPD--------FLCLGEDNRWYLVKRADIVEINSASLPRESL-QSLNLP-D 682
Query: 857 TMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYH 916
+ L KG E C + S + V++ DE+ + E H
Sbjct: 683 LEACRLGKGP------KGDETSRQVCQQMGDRAVSLKIAPEVMAQQQRLDEI-QRTLEQH 735
Query: 917 DAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQI 976
E R ARL K + +E I V+F ++++
Sbjct: 736 PL-----ENRKNPARLLKLHHQRLRLREQLHI-SQVRF----------------QKLQSS 773
Query: 977 EPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKP 1036
+ W+EFL + ++ E AL+ PLG+ A IR ENELWL +V+ + L L+
Sbjct: 774 QSYYWEEFLNLIEILREFEALEGYHPT--PLGQACATIRAENELWLGLVMMSGALERLES 831
Query: 1037 AQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN-------VLDEHRSSFLELQEK 1089
QLAA ++L++E ++ W N Y PS +I + L E R + Q +
Sbjct: 832 PQLAAAVSALITESLRPDTWTN----YLPSPEIIALFTESHPQGVSLQEIRRLLYQTQSR 887
Query: 1090 HGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV 1149
+ + IP L+ GM+E WA G W+E+ + +LD+GD+ RLLRRTIDLL QIP++P V
Sbjct: 888 YHITIPVWLELDLIGMIEQWALGADWQELCENTSLDEGDVVRLLRRTIDLLWQIPQIPGV 947
Query: 1150 DQRLQKNAVDASNVMDRPPI 1169
L+ A +A + R P+
Sbjct: 948 SDYLKDTAKEAVTRLKRFPL 967
>gi|218246136|ref|YP_002371507.1| DSH domain-containing protein [Cyanothece sp. PCC 8801]
gi|218166614|gb|ACK65351.1| DSH domain protein [Cyanothece sp. PCC 8801]
Length = 967
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 373/1100 (33%), Positives = 529/1100 (48%), Gaps = 226/1100 (20%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
LA+++ F +D FQ+ +I A RG SVV+ APT SGKT+I E A + +R+FYTTPL
Sbjct: 12 LATLFPFELDGFQKDAIAALARGKSVVICAPTGSGKTVIGEYAIYHALEQGKRVFYTTPL 71
Query: 212 KALSNQKFREFRETFG---DNN-VGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVS 266
KALSNQKFR+F++ F DN+ VGL+TGD+ IN A I+IMTTEI RNMLY++ +G V
Sbjct: 72 KALSNQKFRDFQDKFSQTEDNSLVGLITGDTVINANAAIVIMTTEIFRNMLYETPIGQVG 131
Query: 267 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326
+ L +V ++LDE HY+SD RGTVWEE IIYCP +Q++ LSAT+ N ++L WI Q
Sbjct: 132 --TSLENVATVILDECHYISDRGRGTVWEESIIYCPPNIQLVALSATIGNPEQLTDWINQ 189
Query: 327 IH-------------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYL 373
+ ELI S RPVPL ++FSTK L PLL+ K +N +L
Sbjct: 190 VRLTAPGVDPKSDAVSLCELINSDFRPVPLRFFFSTKKGLAPLLNPKQTALNPRLK---- 245
Query: 374 QLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTL 433
+K +++R ++R P ++ +
Sbjct: 246 ---------FKGNPNKKRR----------------------------LKREDCPSLLTVI 268
Query: 434 WHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI--------- 484
L +D+LPAI+ IF+RRGCD +VQ LE L++ E ++ L F +
Sbjct: 269 KQLEKQDLLPAIYVIFSRRGCDQSVQRLEGITLVNPEEAHALQYNLLTFFLAENPRLQES 328
Query: 485 -----------LY-----------PDA--------------------------VREPAIK 496
LY PDA VR ++
Sbjct: 329 LLEAVKTENPPLYQPLLDFLSSPIPDADLFDYLARDQETKLHLFQLLATTSQLVRSDQLE 388
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+A HHAG LP+WK +E+LF+ GLVKVVFAT TL+AGINMPART V+S+LSKRT
Sbjct: 389 PLTRGIAVHHAGILPVWKELVEQLFEAGLVKVVFATATLSAGINMPARTTVISALSKRTD 448
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
+G LT +E Q+AGRAGRRG+D G+VV VQTP+EGA+E L AG EPL S FT S
Sbjct: 449 TGHGMLTPSEFLQIAGRAGRRGMDEVGYVVTVQTPFEGAQEAAFLATAGSEPLKSCFTPS 508
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELC 676
YGMVLNLL +L EA+ L+E+SF Y+ AK ++
Sbjct: 509 YGMVLNLL-------------------QKHTLNEAKHLLERSFAEYL-------AKLKIE 542
Query: 677 KIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRF 736
Q+ LT+E++ + LSE+ L+ LK E+R L + E R
Sbjct: 543 PEQQAIAALTTELTQLDMALAG---LSESELFGYEKLKARLKEEQRLLKLLEEQAEETRK 599
Query: 737 SALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFAL 796
+ +L G L +L GK + + +L +
Sbjct: 600 QQILPLLAKLNTGDLLYLK------------------GKHLKVATPQLAVLVG------- 634
Query: 797 NRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRE 856
+ +G D ++ LG DN WY I + P +L Q LP +
Sbjct: 635 --MVPGSGQVPD--------FLCLGEDNRWYLVKRADIVEINSASLPRESL-QSLNLP-D 682
Query: 857 TMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYH 916
+ L KG E C + S + V++ DE+ + E H
Sbjct: 683 LEACRLGKGP------KGDETSRQICQQMGDRAVSLKIAPEVMAQQQRLDEI-QRTLEQH 735
Query: 917 DAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQI 976
E R ARL K + +E I V+F ++++
Sbjct: 736 PL-----ENRKNPARLLKLHHQRLRLREQLHI-SQVRF----------------QKLQSS 773
Query: 977 EPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKP 1036
+ W+EFL + ++ E AL+ PLG+ A IR ENELWL +V+ + L L+
Sbjct: 774 QSYYWEEFLNLIEILREFEALEGYHPT--PLGQACATIRAENELWLGLVMMSGALERLES 831
Query: 1037 AQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN-------VLDEHRSSFLELQEK 1089
QLAA ++L++E ++ W N Y PS +I + L E R + Q +
Sbjct: 832 PQLAAAVSALITESLRPDTWTN----YLPSPEIIALFTESHPQGVSLQEIRRLLYQTQSR 887
Query: 1090 HGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV 1149
+ + IP L+ GM+E WA G W+E+ + +LD+GD+ RLLRRTIDLL QIP++P V
Sbjct: 888 YHITIPVWLELDLIGMIEQWALGADWQELCENTSLDEGDVVRLLRRTIDLLWQIPQIPAV 947
Query: 1150 DQRLQKNAVDASNVMDRPPI 1169
L+ A +A + R P+
Sbjct: 948 SDYLKDTAKEAVTRLKRFPL 967
>gi|123966880|ref|YP_001011961.1| DNA helicase [Prochlorococcus marinus str. MIT 9515]
gi|123201246|gb|ABM72854.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9515]
Length = 908
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 359/1028 (34%), Positives = 540/1028 (52%), Gaps = 153/1028 (14%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L + F +D FQ +I+A G+SVV++APT SGKTLI E A ++++ R+FYTTPL
Sbjct: 4 LEEYFPFPLDPFQIEAIKAINSGNSVVLTAPTGSGKTLIGEFAIYRALSHESRVFYTTPL 63
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKFR+F FG+ VGLLTGD +INR+A IL+MTTEI RNMLY L
Sbjct: 64 KALSNQKFRDFINQFGEKKVGLLTGDISINRDAPILVMTTEIFRNMLYGEFEEFCDP--L 121
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+++ ++LDE HY++D RGTVWEE II+CP QII LSAT++NAD+L WI ++HG T
Sbjct: 122 VNLESVILDECHYMNDPQRGTVWEETIIHCPSRAQIIALSATISNADQLQNWIEKVHGPT 181
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
L+ S +RPVPL + F + L PLL+ KG
Sbjct: 182 VLVNSDKRPVPLDFMFCSAKGLHPLLNNKGN----------------------------- 212
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
++ N + + Q K + I + +VP + + L R+MLPAI+FIF+R
Sbjct: 213 ------GIHPNCKIWRAPKGQKKKGKVGRIMQPKVPPIAFVVSKLSERNMLPAIYFIFSR 266
Query: 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-AIKGLLKGVAAHHAGCL 510
RGCD AV+Y++D +L+ E + + L + + V++ + L +G+A+HHAG L
Sbjct: 267 RGCDKAVEYIKDLSLVSYSEANLISQRLDVYLKNNEEGVKDKFHCEALKRGIASHHAGLL 326
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
P WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLSKRT G L S+E QM
Sbjct: 327 PAWKELVEELFQKGLIKVVFATETLAAGINMPARTTVISSLSKRTDEGHRLLFSSEFLQM 386
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 630
+GRAGRRG D +G+VV +QT +EGA+E L + PLVSQFT SYGMVLNLL
Sbjct: 387 SGRAGRRGKDLQGYVVTLQTRFEGAKEASTLAISQPNPLVSQFTPSYGMVLNLLQNY--- 443
Query: 631 HLSNESDDMKALQAGRSLEEARKLVEQSFGN--YVG-SNVMLAAKDELCKIQKETDVLTS 687
SL+++R+L+++SFG+ Y+G S+ + D L K +E +T+
Sbjct: 444 ----------------SLDKSRELIKRSFGSFLYLGESSEEMVILDNLEKDLQELKKITT 487
Query: 688 EISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFE 747
IS D Y++M + LK E+R L ++ K + L +
Sbjct: 488 NISWQDFD----------LYEKM---KSRLKEERRLLRILEKQSAEKLSEEITSALTYIK 534
Query: 748 NGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM--ASINDSFALNRLAQSNGD 805
+G L + K + VPA+ K +S+K+ ++ +I++ F L
Sbjct: 535 DGSL----ISIKAPQIKRKVVPAMICKKI--YESNKITSLLCLTIDNLFIL--------- 579
Query: 806 DYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKG 865
+KPSY V + FP++ E L L++
Sbjct: 580 ------IKPSYIVNI---------------------FPDL---------EEIKILKLEEP 603
Query: 866 EMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQ 925
+M F G + G+ E+ + + + E E + +D EQ
Sbjct: 604 KM--------NFSG-EVVRGNDESQTLA------HKIFEISEKYDLRTPQYDLTTEVLEQ 648
Query: 926 RTKVARLKKKIARTEG--FKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKE 983
R + L +KI+ F + KK+ K ++I ++ R +E E WK+
Sbjct: 649 RKLITNLDEKISNQPAHKFGDSKKL----KRYRKRIIEIEQEIIRRNNLLEDKENHNWKK 704
Query: 984 FLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVC 1043
F ++ +++ L N + +G++ AIR ENELW+ +VL + L DL P LAA+
Sbjct: 705 FTNLTKILNHFGCL--NNLELTEVGQSVGAIRSENELWVGLVLLSGYLDDLTPPDLAAII 762
Query: 1044 ASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFS 1103
++ + + +W N ++PS VI V N L+ Q+ ++ P L+ + +
Sbjct: 763 QAICVDVRRPNVWCN----FKPSIKVIEVFNELEGLGKLVASKQKNFNIDTPIFLEIELT 818
Query: 1104 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNV 1163
G++ WASG W+E++ + +LD+GD+ R+LRR++D+L+QI V +L++ A A
Sbjct: 819 GIISEWASGKKWKELIFNTSLDEGDVVRILRRSMDVLSQIQYCVGVSNKLKQKAKLALKA 878
Query: 1164 MDRPPISE 1171
++R P+SE
Sbjct: 879 INRFPVSE 886
>gi|33862023|ref|NP_893584.1| DNA helicase [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33634241|emb|CAE19926.1| putative DNA helicase [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
Length = 908
Score = 523 bits (1348), Expect = e-145, Method: Compositional matrix adjust.
Identities = 362/1042 (34%), Positives = 541/1042 (51%), Gaps = 172/1042 (16%)
Query: 146 MIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205
M++++E + F +D FQ +I+A G+SVV++APT SGKTLI E A ++++ R+
Sbjct: 1 MLNLEEY---FPFPLDPFQIEAIKAINSGNSVVLTAPTGSGKTLIGEFAIYRGLSHESRV 57
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
FYTTPLKALSNQKFR+F FG+ VGLLTGD +INR+A IL+MTTEI RNMLY
Sbjct: 58 FYTTPLKALSNQKFRDFINQFGEKKVGLLTGDISINRDAPILVMTTEIFRNMLYGE--FE 115
Query: 266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325
+ L +++ ++LDE HY++D RGTVWEE II+CP QII LSAT++NAD+L WI
Sbjct: 116 EFDDPLVNLESVILDECHYMNDPQRGTVWEETIIHCPSRAQIIALSATISNADQLQNWIE 175
Query: 326 QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
++HG T L+ S++RPVPL + F + L PLL+ KG
Sbjct: 176 KVHGPTVLVNSNKRPVPLDFIFCSAKGLHPLLNNKGN----------------------- 212
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
++ N + + Q K + I + + P + + L R+MLPAI
Sbjct: 213 ------------GIHPNCKIWRAPKGQKKKGKVGRIMQPKAPPIAFVVSKLAERNMLPAI 260
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIK------GLL 499
+FIF+RRGCD AV+Y++D +L+ SE L +R + + E IK L
Sbjct: 261 YFIFSRRGCDKAVEYIKDLSLVS---YSEANLISQRLDVYLKN--NEEGIKDKFHCEALK 315
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+G+A+HHAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT G
Sbjct: 316 RGIASHHAGLLPAWKELVEELFQQGLIKVVFATETLAAGINMPARTTVISTLSKRTDEGH 375
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
L S+E QM+GRAGRRG D +G+VV +QT +EGA+E L + PLVSQFT SYGM
Sbjct: 376 RLLFSSEFLQMSGRAGRRGKDLQGYVVTLQTRFEGAKEASSLAISEPNPLVSQFTPSYGM 435
Query: 620 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN--YVG-SNVMLAAKDELC 676
VLNLL SL+++R+L+++SFG+ Y+G S+ A L
Sbjct: 436 VLNLLQNY-------------------SLDKSRELIKRSFGSFLYLGESSEETAILYNLG 476
Query: 677 KIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRF 736
+ KE +TS IS D +Y++ L+ LK E+R L ++ K
Sbjct: 477 RDLKELKKITSNISWQDFD----------SYEK---LKSRLKEERRLLRILEKQAAEKLS 523
Query: 737 SALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM--ASINDSF 794
+ L ++G L + K + VPA+ K +S K+K++ +I++ F
Sbjct: 524 EEITSALTFIKDGSL----ISIKAPQINRKVVPALICKKI--YESKKIKSLLCLTIDNLF 577
Query: 795 ALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALP 854
L +KPSY V + D + G + +GD
Sbjct: 578 IL---------------IKPSYIVNIFPDLEEIEILRLEEPKMNFSG----EVVRGDNES 618
Query: 855 RETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSS---LSESDEVL-- 909
+ + + D E + L T + L+ VL+ ++ +E +
Sbjct: 619 QTFVDRIFDISE-----------------KYDLRTPQYDLSTEVLAQKKLITNLEETITN 661
Query: 910 HMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 969
+ ++ D+ K+ R +K+I E ++IV EEK
Sbjct: 662 QPAHKFGDS--------KKLKRYRKRIIEIE-----QEIVMKNNLMEEK----------- 697
Query: 970 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 1029
E W +F + +++ L N + +G++ AIR ENELW+ +VL +
Sbjct: 698 -------ENHNWIKFTDLIKILNHFGCL--NDLELTEVGQSVGAIRSENELWVGLVLLSG 748
Query: 1030 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEK 1089
L DL P LAA+ ++ + + LW N ++PS VI+V N L+ R Q K
Sbjct: 749 YLDDLAPPDLAAIIQAICVDVRRPNLWCN----FKPSIKVIDVFNELESLRKLVASKQNK 804
Query: 1090 HGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV 1149
+ P L+++ +G++ WA G W+E++ + +LD+GD+ R+LRR++D+L+QI V
Sbjct: 805 FNINTPIFLETELTGIISEWARGKKWKELIFNTSLDEGDVVRILRRSMDVLSQIQYCVGV 864
Query: 1150 DQRLQKNAVDASNVMDRPPISE 1171
+L+ A A ++R P+SE
Sbjct: 865 SNKLKNKAKLALKAINRFPVSE 886
>gi|425470310|ref|ZP_18849180.1| putative helicase [Microcystis aeruginosa PCC 9701]
gi|389884126|emb|CCI35561.1| putative helicase [Microcystis aeruginosa PCC 9701]
Length = 975
Score = 523 bits (1348), Expect = e-145, Method: Compositional matrix adjust.
Identities = 381/1117 (34%), Positives = 534/1117 (47%), Gaps = 250/1117 (22%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L +I+ F++D FQ+S+I A G SVVV APT SGKTLI E A + +R+FYTTP
Sbjct: 11 DLKTIFPFKLDDFQQSAIAALAAGKSVVVCAPTGSGKTLIGEYAIYRALERGKRVFYTTP 70
Query: 211 LKALSNQKFREFRETFGDN-------------NVGLLTGDSAINREAQILIMTTEILRNM 257
LKALSNQKFR+F+E FG VGL+TGD IN A I++MTTEI RNM
Sbjct: 71 LKALSNQKFRDFQEKFGRTPTDGDEDSPLLFAEVGLITGDVVINPSALIVVMTTEIFRNM 130
Query: 258 LYQS-VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316
LYQ+ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSAT+ N
Sbjct: 131 LYQTPIGEVG--TSLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSATIGN 188
Query: 317 ADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 365
EL WI + ELI S RPVPL +YF+ K L PLLD K +N
Sbjct: 189 PGELTDWINWVRQLPQPSDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQSKVN 248
Query: 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 425
KL S+V G RR ++R
Sbjct: 249 PKLR--------SKV---GHGKPRR------------------------------LKRED 267
Query: 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV---------- 475
P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 268 CPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLIFFLE 327
Query: 476 ------ELALKRFRILYP------------------------------------------ 487
ELAL F + P
Sbjct: 328 DNPNLQELALSFFAVENPPLHQKLLAFFANNPQSDEQLLSLLTADPETKNQLFEFLASAS 387
Query: 488 DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPART V
Sbjct: 388 QLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPARTTV 447
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L A E
Sbjct: 448 ISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLATAQPE 507
Query: 608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV 667
PL S F SYGMVLNLL SLEE + L+E+SF Y+
Sbjct: 508 PLQSCFAPSYGMVLNLL-------------------QKHSLEEVKDLLERSFAEYL---- 544
Query: 668 MLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEE--LKAEKRFRT 725
A+ +L +++ LT+E++ +D E+A ++ E EK
Sbjct: 545 ---ARLKLSPERQQITALTTELAK--LD------------MELAGIEREQVFSYEKLRER 587
Query: 726 ELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLK 785
K ++ + K E + +P + +G L +K
Sbjct: 588 LREEERLYKILASQSEAQKRQE----------------IHLKLPNIPVGTILHLKGKHIK 631
Query: 786 NMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNV 845
+ F +N L + V+ V LGSDN WY I + R GF
Sbjct: 632 VPVPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDR-GFITP 680
Query: 846 ALAQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSLNVPVL 899
A A G+ +P ++ L KGE + +AD + G+ V L
Sbjct: 681 A-ALGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------PPVAEL 726
Query: 900 SSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKI 959
++ S+ E+++ H ++R RL K Y + + K + +I
Sbjct: 727 ATQSQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDRELARDKLHKTQI 773
Query: 960 KRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENE 1019
K K +S++ W+EFL + ++ E +AL++ PLGE AA IRGENE
Sbjct: 774 KYQKQQSRKSYY---------WEEFLNLIEILREFQALEVYLPT--PLGEAAATIRGENE 822
Query: 1020 LWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV---- 1075
LWL + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 823 LWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGN 878
Query: 1076 ---LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARL 1132
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RL
Sbjct: 879 SPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRL 938
Query: 1133 LRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
LRRT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 939 LRRTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|443647322|ref|ZP_21129678.1| DEAD-box ATP-dependent RNA helicase ISE2 [Microcystis aeruginosa
DIANCHI905]
gi|443335499|gb|ELS49967.1| DEAD-box ATP-dependent RNA helicase ISE2 [Microcystis aeruginosa
DIANCHI905]
Length = 975
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 381/1117 (34%), Positives = 533/1117 (47%), Gaps = 250/1117 (22%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L +I+ F++D FQ S+I A G SVVV APT SGKTLI E A + +R+FYTTP
Sbjct: 11 DLKTIFPFKLDDFQHSAIAALAAGKSVVVCAPTGSGKTLIGEYAIYRALERGKRVFYTTP 70
Query: 211 LKALSNQKFREFRETFGDN-------------NVGLLTGDSAINREAQILIMTTEILRNM 257
LKALSNQKFR+F+E FG VGL+TGD IN A I++MTTEI RNM
Sbjct: 71 LKALSNQKFRDFQEKFGRTPTDGDEDSPLLFAEVGLITGDVVINPSALIVVMTTEIFRNM 130
Query: 258 LYQS-VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316
LYQ+ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSAT+ N
Sbjct: 131 LYQTPIGEVG--TSLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSATIGN 188
Query: 317 ADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 365
EL WI + ELI S RPVPL +YF+ K L PLLD K +N
Sbjct: 189 PGELTDWINWVRQLRQPSDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQSKVN 248
Query: 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 425
KL S+V G RR ++R
Sbjct: 249 PKLH--------SKV---GHGKPRR------------------------------LKRED 267
Query: 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV---------- 475
P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 268 CPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLIFFLE 327
Query: 476 ------ELALKRFRILYP------------------------------------------ 487
ELAL F + P
Sbjct: 328 DNPNLQELALSFFAVENPPLHQKLLAFFANNPQSEDQLLSLLTADSETKNQLFEFLASAS 387
Query: 488 DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPART V
Sbjct: 388 QLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPARTTV 447
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L A E
Sbjct: 448 ISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAIAQPE 507
Query: 608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV 667
PL S F SYGMVLNLL SLEE + L+E+SF Y+
Sbjct: 508 PLQSCFAPSYGMVLNLL-------------------QKHSLEETKDLLERSFAEYL---- 544
Query: 668 MLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEE--LKAEKRFRT 725
A+ +L +++ LT+E++ +D E+A ++ E EK
Sbjct: 545 ---ARLKLSPERQQITALTTELAK--LD------------MELAGIEREQVFSYEKLRER 587
Query: 726 ELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLK 785
K ++ + K E + +P + +G L +K
Sbjct: 588 LREEERLYKILASQSEAQKRQE----------------IHLKLPNIPIGTILHLKGKHIK 631
Query: 786 NMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNV 845
+ F +N L + V+ V LGSDN WY I + R GF
Sbjct: 632 VPVPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDR-GFITP 680
Query: 846 ALAQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSLNVPVL 899
A A G+ +P ++ L KGE + +AD + G+ V L
Sbjct: 681 A-ALGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------PPVAEL 726
Query: 900 SSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKI 959
++ S+ E+++ H ++R RL K Y + + K + +I
Sbjct: 727 ATQSQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDREIARDKLHKTQI 773
Query: 960 KRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENE 1019
K K +S++ W+EFL + ++ E +AL+ + PLGE AA IRGENE
Sbjct: 774 KYQKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATIRGENE 822
Query: 1020 LWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV---- 1075
LWL + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 823 LWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGN 878
Query: 1076 ---LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARL 1132
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RL
Sbjct: 879 SPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRL 938
Query: 1133 LRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
LRRT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 939 LRRTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|425437614|ref|ZP_18818029.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9432]
gi|389677388|emb|CCH93670.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9432]
Length = 975
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 381/1115 (34%), Positives = 536/1115 (48%), Gaps = 246/1115 (22%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L +I+ F++D FQ+S+I A G SVVV APT SGKTLI E A + +R+FYTTP
Sbjct: 11 DLKTIFPFKLDDFQQSAIAALTVGKSVVVCAPTGSGKTLIGEYAIYRALERGKRVFYTTP 70
Query: 211 LKALSNQKFREFRETFGDN-------------NVGLLTGDSAINREAQILIMTTEILRNM 257
LKALSNQKFR+F+E FG VGL+TGD IN A I++MTTEI RNM
Sbjct: 71 LKALSNQKFRDFQEKFGRTPTDGDEDSPLLFAEVGLITGDVVINPSALIVVMTTEIFRNM 130
Query: 258 LYQS-VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316
LYQ+ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSAT+ N
Sbjct: 131 LYQTPIGEVG--TSLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSATIGN 188
Query: 317 ADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 365
EL WI + ELI S RPVPL +YF+ K L PLLD K +N
Sbjct: 189 PGELTDWINWVRQLRQPSDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQSKVN 248
Query: 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 425
KL S+V G RR ++R
Sbjct: 249 PKLH--------SKV---GHGKPRR------------------------------LKRED 267
Query: 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV---------- 475
P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 268 CPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLIFFLE 327
Query: 476 ------ELALKRFRILYP------------------------------------------ 487
ELAL F + P
Sbjct: 328 DNPNLQELALSFFAVENPPLHQKLLAFFANNPQSEDQLLSLLTADSETKNQLFEFLASAS 387
Query: 488 DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPART V
Sbjct: 388 QLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPARTTV 447
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L A E
Sbjct: 448 ISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAIAQPE 507
Query: 608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV 667
PL S F SYGMVLNLL SLEE + L+E+SF Y+
Sbjct: 508 PLQSCFAPSYGMVLNLL-------------------QKHSLEETKDLLERSFAEYL---- 544
Query: 668 MLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTEL 727
A+ +L +++ LT+E++ +D E+A ++ E+ F E
Sbjct: 545 ---ARLKLSPERQQITALTTELAK--LD------------MELAGIER----EQVFSYEK 583
Query: 728 RRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM 787
R + K + E + + + +P + +G L +K
Sbjct: 584 LRERLREEERLYKILASQAEA----------QKRQEIHLKLPNIPVGTILHLKGKHIKVP 633
Query: 788 ASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVAL 847
+ F +N L + V+ V LGSDN WY I + R GF A
Sbjct: 634 VPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDR-GFLTPA- 681
Query: 848 AQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSLNVPVLSS 901
A G+ +P ++ L KGE + +AD + G+ V L++
Sbjct: 682 ALGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------PPVAELAT 728
Query: 902 LSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKR 961
S+ E+++ H ++R RL K Y + + K + +IK
Sbjct: 729 QSQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDREIARDKLHKTQIKY 775
Query: 962 LKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELW 1021
K +S++ W+EFL + ++ E +AL+ + PLGE AA IRGENELW
Sbjct: 776 QKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATIRGENELW 824
Query: 1022 LAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV------ 1075
L + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 825 LGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGNSP 880
Query: 1076 -LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLR 1134
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLR
Sbjct: 881 GLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLR 940
Query: 1135 RTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
RT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 941 RTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|440754684|ref|ZP_20933886.1| DEAD-box ATP-dependent RNA helicase ISE2 [Microcystis aeruginosa
TAIHU98]
gi|440174890|gb|ELP54259.1| DEAD-box ATP-dependent RNA helicase ISE2 [Microcystis aeruginosa
TAIHU98]
Length = 975
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 381/1115 (34%), Positives = 536/1115 (48%), Gaps = 246/1115 (22%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L +I+ F++D FQ+S+I A G SVVV APT SGKTLI E A + +R+FYTTP
Sbjct: 11 DLKTIFPFKLDDFQQSAIAALAAGKSVVVCAPTGSGKTLIGEYAIYRALERGKRVFYTTP 70
Query: 211 LKALSNQKFREFRETFGDN-------------NVGLLTGDSAINREAQILIMTTEILRNM 257
LKALSNQKFR+F+E FG VGL+TGD IN A I++MTTEI RNM
Sbjct: 71 LKALSNQKFRDFQEKFGRTPTDGDEDSPLLFAEVGLITGDVVINPSALIVVMTTEIFRNM 130
Query: 258 LYQS-VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316
LYQ+ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSAT+ N
Sbjct: 131 LYQTPIGEVG--TSLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSATIGN 188
Query: 317 ADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 365
EL WI + ELI S RPVPL +YF+ K L PLLD K +N
Sbjct: 189 PGELTDWINWVRQLRQPSDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQSKVN 248
Query: 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 425
KL S+V G RR ++R
Sbjct: 249 PKLH--------SKV---GHGKPRR------------------------------LKRED 267
Query: 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV---------- 475
P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 268 CPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLIFFLE 327
Query: 476 ------ELALKRFRILYP------------------------------------------ 487
ELAL F + P
Sbjct: 328 DNPNLQELALSFFAVENPPLHQKLLAFFANNPQSEDQLLSLLTADPETKNQLFEFLASAS 387
Query: 488 DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPART V
Sbjct: 388 QLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPARTTV 447
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L A E
Sbjct: 448 ISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAIAQPE 507
Query: 608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV 667
PL S F SYGMVLNLL SLEE + L+E+SF Y+
Sbjct: 508 PLQSCFAPSYGMVLNLL-------------------QKHSLEETKDLLERSFAEYL---- 544
Query: 668 MLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTEL 727
A+ +L +++ LT+E++ +D E+A ++ E+ F E
Sbjct: 545 ---ARLKLSPERQQITALTTELAK--LD------------MELAGIER----EQVFSYEK 583
Query: 728 RRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM 787
R + K + E + + + +P + +G L +K
Sbjct: 584 LRERLREEERLYKILASQAEA----------QKRQEIHLKLPNIPVGTILHLKGKHIKVP 633
Query: 788 ASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVAL 847
+ F +N L + V+ V LGSDN WY I + R GF A
Sbjct: 634 VPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDR-GFLTPA- 681
Query: 848 AQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSLNVPVLSS 901
A G+ +P ++ L KGE + +AD + G+ V L++
Sbjct: 682 ALGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------PPVAELAT 728
Query: 902 LSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKR 961
S+ E+++ H ++R RL K Y + + K + +IK
Sbjct: 729 QSQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDREIARDKLHKTQIKY 775
Query: 962 LKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELW 1021
K +S++ W+EFL + ++ E +AL+ + PLGE AA IRGENELW
Sbjct: 776 QKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATIRGENELW 824
Query: 1022 LAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV------ 1075
L + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 825 LGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGNSP 880
Query: 1076 -LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLR 1134
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLR
Sbjct: 881 GLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLR 940
Query: 1135 RTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
RT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 941 RTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|159027769|emb|CAO89639.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 966
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 381/1117 (34%), Positives = 533/1117 (47%), Gaps = 250/1117 (22%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L +I+ F++D FQ S+I A G SVVV APT SGKTLI E A + +R+FYTTP
Sbjct: 2 DLKTIFPFKLDDFQHSAIAALAAGKSVVVCAPTGSGKTLIGEYAIYRALERGKRVFYTTP 61
Query: 211 LKALSNQKFREFRETFGDN-------------NVGLLTGDSAINREAQILIMTTEILRNM 257
LKALSNQKFR+F+E FG VGL+TGD IN A I++MTTEI RNM
Sbjct: 62 LKALSNQKFRDFQEKFGRTPTDGDEDSPLLFAEVGLITGDVVINPSALIVVMTTEIFRNM 121
Query: 258 LYQS-VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316
LYQ+ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSAT+ N
Sbjct: 122 LYQTPIGEVG--TSLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSATIGN 179
Query: 317 ADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 365
EL WI + ELI S RPVPL +YF+ K L PLLD K +N
Sbjct: 180 PGELTDWINWVRQLRQPSDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQSKVN 239
Query: 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 425
KL S+V G RR ++R
Sbjct: 240 PKLH--------SKV---GHGKPRR------------------------------LKRED 258
Query: 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV---------- 475
P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 259 CPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLIFFLE 318
Query: 476 ------ELALKRFRILYP------------------------------------------ 487
ELAL F + P
Sbjct: 319 DNPNLQELALSFFAVENPPLHQKLLAFFANNPQSEDQLLSLLTADSETKNQLFEFLASAS 378
Query: 488 DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPART V
Sbjct: 379 QLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPARTTV 438
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L A E
Sbjct: 439 ISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAIAQPE 498
Query: 608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV 667
PL S F SYGMVLNLL SLEE + L+E+SF Y+
Sbjct: 499 PLQSCFAPSYGMVLNLL-------------------QKHSLEETKDLLERSFAEYL---- 535
Query: 668 MLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEE--LKAEKRFRT 725
A+ +L +++ LT+E++ +D E+A ++ E EK
Sbjct: 536 ---ARLKLSPERQQITALTTELAK--LD------------MELAGIEREQVFSYEKLRER 578
Query: 726 ELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLK 785
K ++ + K E + +P + +G L +K
Sbjct: 579 LREEERLYKILASQSEAQKRQE----------------IHLKLPNIPIGTILHLKGKHIK 622
Query: 786 NMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNV 845
+ F +N L + V+ V LGSDN WY I + R GF
Sbjct: 623 VPVPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDR-GFITP 671
Query: 846 ALAQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSLNVPVL 899
A A G+ +P ++ L KGE + +AD + G+ V L
Sbjct: 672 A-ALGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------PPVAEL 717
Query: 900 SSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKI 959
++ S+ E+++ H ++R RL K Y + + K + +I
Sbjct: 718 ATQSQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDREIARDKLHKTQI 764
Query: 960 KRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENE 1019
K K +S++ W+EFL + ++ E +AL+ + PLGE AA IRGENE
Sbjct: 765 KYQKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATIRGENE 813
Query: 1020 LWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV---- 1075
LWL + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 814 LWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGN 869
Query: 1076 ---LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARL 1132
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RL
Sbjct: 870 SPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRL 929
Query: 1133 LRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
LRRT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 930 LRRTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 966
>gi|425442478|ref|ZP_18822721.1| putative helicase [Microcystis aeruginosa PCC 9717]
gi|389716493|emb|CCH99283.1| putative helicase [Microcystis aeruginosa PCC 9717]
Length = 975
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 380/1117 (34%), Positives = 535/1117 (47%), Gaps = 250/1117 (22%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L +I+ F++D FQ+S+I A G SVVV APT SGKTLI E A + +R+FYTTP
Sbjct: 11 DLKTIFPFKLDDFQQSAIAALAAGKSVVVCAPTGSGKTLIGEYAIYRALERGKRVFYTTP 70
Query: 211 LKALSNQKFREFRETFGDN-------------NVGLLTGDSAINREAQILIMTTEILRNM 257
LKALSNQKFR+F+E FG VGL+TGD IN A I++MTTEI RNM
Sbjct: 71 LKALSNQKFRDFQEKFGRTPTDGDEDSPLLFAEVGLITGDVVINPSALIVVMTTEIFRNM 130
Query: 258 LYQS-VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316
LYQ+ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSAT+ N
Sbjct: 131 LYQTPIGEVG--TSLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSATIGN 188
Query: 317 ADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 365
EL WI + ELI S RPVPL +YF+ K L PLLD K +N
Sbjct: 189 PGELTDWINWVRQLPQSGDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQSKVN 248
Query: 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 425
KL S+V G RR ++R
Sbjct: 249 PKLR--------SKV---GHGKPRR------------------------------LKRED 267
Query: 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV---------- 475
P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL+++ E +
Sbjct: 268 CPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNQEEARAIYYRLLIFFLE 327
Query: 476 ------ELALKRFRILYP------------------------------------------ 487
ELAL F + P
Sbjct: 328 DNPNLQELALSFFAVENPPLHQKLLAFFANNPQSDDQLLSLLTAAPETKNQLFEFLASAS 387
Query: 488 DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPART V
Sbjct: 388 QLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPARTTV 447
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L A E
Sbjct: 448 ISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAIAQPE 507
Query: 608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV 667
PL S F SYGMVLNLL SLEEA+ L+E+SF Y+
Sbjct: 508 PLQSCFAPSYGMVLNLL-------------------QKHSLEEAKDLLERSFAEYL---- 544
Query: 668 MLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEE--LKAEKRFRT 725
A+ +L +++ LT+E++ +D E+A ++ E EK
Sbjct: 545 ---ARLKLSPERQQITALTTELAK--LD------------MELAGIEREQVFSYEKLRER 587
Query: 726 ELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLK 785
K ++ + K E + +P + +G L +K
Sbjct: 588 LREEERLYKILASQSEAQKRQE----------------IHLKLPNIPVGTILHLKGKHIK 631
Query: 786 NMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNV 845
+ F +N L + V+ V LGSDN WY I + R GF
Sbjct: 632 VPVPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDR-GFLTP 680
Query: 846 ALAQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSLNVPVL 899
A G+ +P ++ L KGE + +AD + G+ V L
Sbjct: 681 A-ELGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------PPVAEL 726
Query: 900 SSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKI 959
++ ++ E+++ H ++R RL K Y + + K + +I
Sbjct: 727 ATQAQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDREIARDKLHKTQI 773
Query: 960 KRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENE 1019
K K +S++ W+EFL + ++ E +AL+ + PLGE AA IRGENE
Sbjct: 774 KYQKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATIRGENE 822
Query: 1020 LWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV---- 1075
LWL + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 823 LWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGN 878
Query: 1076 ---LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARL 1132
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RL
Sbjct: 879 SPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRL 938
Query: 1133 LRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
LRRT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 939 LRRTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|427724831|ref|YP_007072108.1| DSH domain-containing protein [Leptolyngbya sp. PCC 7376]
gi|427356551|gb|AFY39274.1| DSH domain protein [Leptolyngbya sp. PCC 7376]
Length = 960
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 376/1102 (34%), Positives = 541/1102 (49%), Gaps = 228/1102 (20%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L I+ F++D FQ+ +I A SVVV APT SGKT+I E + +A +R+FYTTP
Sbjct: 4 DLKEIFPFQLDDFQQQAIAALDADKSVVVCAPTGSGKTVIGEYSIHRAIAQGKRVFYTTP 63
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+F ETFG + VGL+TGD+ IN +A I++MTTEI RNMLY++ +G V +
Sbjct: 64 LKALSNQKLRDFSETFGKDQVGLITGDTIINAQATIVVMTTEIFRNMLYETPIGEVGT-- 121
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-- 327
L +V ++LDE HY+S+ RGTVWEE IIYCP EVQI+ LSAT+ N + WI +
Sbjct: 122 SLVNVSTVILDECHYISNRGRGTVWEESIIYCPSEVQIVALSATIGNPEIFTAWINRTRL 181
Query: 328 -----HGKTE-----LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLST 377
H ++E L+ S RPVPL ++FS+K L PL D KG MN KL
Sbjct: 182 AAHEDHPESEAHRCQLVDSDHRPVPLKFFFSSKKGLFPLFDSKGNKMNPKL--------- 232
Query: 378 SEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437
R RN+ RR P + + LR
Sbjct: 233 -----------RSRNNAPQGKRRKR-------------------RREDCPSLFAIVRQLR 262
Query: 438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNL----------------------------LDE 469
+D+LPAI+ IF+RRGCD +V L+D NL L +
Sbjct: 263 QQDLLPAIYIIFSRRGCDRSVTQLDDVNLVTPEEAKLLAATLLHFFLDRQEKLQEKILAQ 322
Query: 470 C-EMSEVELALKRF----------RILYPDA------------------VREPAIKGLLK 500
C E+ E++ L F + Y DA R I+ LL+
Sbjct: 323 CAELPELKALLLDFIAKNPFSTEKLVDYLDANLELRQQLWEFFAKESKFARPGQIEPLLR 382
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+AAHHAG LP WK +E+LF+ GLVK+VFAT TLAAGINMPART V+S+LSKR+ G
Sbjct: 383 GLAAHHAGILPAWKELVEKLFEMGLVKLVFATATLAAGINMPARTTVISALSKRSDEGHR 442
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
LT +E QMAGRAGRRG+D GHVV ++TP+EG++E +L A EPL S FT SYGMV
Sbjct: 443 MLTPSEFLQMAGRAGRRGMDKVGHVVTIETPFEGSKEAARLALAEAEPLRSWFTPSYGMV 502
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
LNLL +LEE+++L+ +SF Y +++L Q+
Sbjct: 503 LNLL-------------------QKHTLEESKELLSRSFAEY-------QVQEKLSPEQE 536
Query: 681 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALK 740
LT+EI+ I S +S+ + + L+E LK E+R LR + E + L
Sbjct: 537 AIAELTTEIARIDIGLAS---ISDKDFDRYSKLKERLKEEERLLRILRDQAEDETKKILA 593
Query: 741 DILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLA 800
IL+ G + L L+ K+ V+ V AV + F+ D L
Sbjct: 594 PILETLPLGSI--LHLKGKNLR-VKEPVTAVLVEVFEEKDRPTL---------------- 634
Query: 801 QSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSL 860
+ LG+D WY + + +P L Q ET+ L
Sbjct: 635 -----------------LCLGADKRWYQVIYTDVAALNEGLYPTEKLEQIPLPVDETLKL 677
Query: 861 LLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVE 920
G ++ ++ P++ ++E + E +A E
Sbjct: 678 ---------------------GKNGKIDKEAY----PLVKLIAE------YTAELIEAPE 706
Query: 921 NYKEQRTKVARLKKKIARTEGFKEYK--KIVDTVKFTEEKIKRLKARSKRLTKRIEQIEP 978
QR ++ ++ K A + K K K++ + +E +K L R + L ++
Sbjct: 707 -VAAQRQRMEAIQAKFAASPLSKLDKPGKLLKRHQRRKELLKELN-RRQTLYRQHSSKRS 764
Query: 979 SGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 1038
W++FL + V+ + AL+ + LG AA IRGENELWLA+ L + L L P
Sbjct: 765 YYWQDFLNLIQVLQDFNALNQYKPTV--LGRAAATIRGENELWLALCLMSGQLNKLSPEH 822
Query: 1039 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV-----------LDEHRSSFLELQ 1087
LAA +++SE + W + Y V+ V+ + L E R ++Q
Sbjct: 823 LAAAICAIISEPPRPDSWTD----YSQPKPVLEVLGIRKKDQGHNPVSLWELRRQLYQVQ 878
Query: 1088 EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLP 1147
+ GV +P L+S+F G++E WA G W E+ + +LD+GD+ R+LRRT+D+L QIP++P
Sbjct: 879 KHSGVTMPVWLESKFVGLIEQWALGTDWTELCENTSLDEGDIVRMLRRTVDVLWQIPQIP 938
Query: 1148 DVDQRLQKNAVDASNVMDRPPI 1169
++D L + A +A M R P+
Sbjct: 939 EIDPDLMRTAKEAVAKMKRFPV 960
>gi|425447074|ref|ZP_18827068.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9443]
gi|389732453|emb|CCI03611.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9443]
Length = 975
Score = 521 bits (1341), Expect = e-144, Method: Compositional matrix adjust.
Identities = 380/1117 (34%), Positives = 535/1117 (47%), Gaps = 250/1117 (22%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+ +I+ F++D FQ+S+I A G SVVV APT SGKTLI E A + +R+FYTTP
Sbjct: 11 DFKTIFPFKLDDFQQSAIAALAAGKSVVVCAPTGSGKTLIGEYAIYRALERGKRVFYTTP 70
Query: 211 LKALSNQKFREFRETFGDN-------------NVGLLTGDSAINREAQILIMTTEILRNM 257
LKALSNQKFR+F+E FG VGL+TGD IN A I++MTTEI RNM
Sbjct: 71 LKALSNQKFRDFQEKFGRTPTDGDEDSPLLFAEVGLITGDVVINPSALIVVMTTEIFRNM 130
Query: 258 LYQS-VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316
LY++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSAT+ N
Sbjct: 131 LYRTPIGEVG--TSLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSATIGN 188
Query: 317 ADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 365
EL WI + ELI S RPVPL +YF+ K L PLLD K +N
Sbjct: 189 PGELTDWINWVRQLRQPSDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQSKVN 248
Query: 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 425
KL S+V G RR ++R
Sbjct: 249 PKLR--------SKV---GHGKPRR------------------------------LKRED 267
Query: 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV---------- 475
P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL+++ E +
Sbjct: 268 CPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNQEEARAIYYRLLIFFLE 327
Query: 476 ------ELALKRFRILYP------------------------------------------ 487
ELAL F + P
Sbjct: 328 DNPNLQELALSFFAVENPPLHQKLLAFFANNPQSEDQLLSLLTADSETKNQLFEFLASAS 387
Query: 488 DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPART V
Sbjct: 388 QLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPARTTV 447
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L A E
Sbjct: 448 ISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLATAQPE 507
Query: 608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV 667
PL S F SYGMVLNLL SLEEA+ L+E+SF Y+
Sbjct: 508 PLQSCFAPSYGMVLNLL-------------------QKHSLEEAKDLLERSFAEYL---- 544
Query: 668 MLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEE--LKAEKRFRT 725
A+ +L +++ LT+E++ +D E+A ++ E EK
Sbjct: 545 ---ARLKLSPERQQITALTTELAK--LD------------MELAGIEREQVFSYEKLRER 587
Query: 726 ELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLK 785
K ++ + K E + +P + +G L +K
Sbjct: 588 LREEERLYKILASQSEAQKRQE----------------IHLKLPNIPVGTILHLKGKHIK 631
Query: 786 NMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNV 845
+ F +N L + V+ V LGSDN WY I + R GF
Sbjct: 632 VPVPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDR-GFLTP 680
Query: 846 ALAQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSLNVPVL 899
A A G+ +P ++ L KGE + +AD + G+ V L
Sbjct: 681 A-ALGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------PPVAEL 726
Query: 900 SSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKI 959
++ S+ E+++ H ++R RL K Y + + K + +I
Sbjct: 727 ATQSQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDREIARDKLHKTQI 773
Query: 960 KRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENE 1019
K K +S++ W+EFL + ++ E +AL+ + PLGE AA IRGENE
Sbjct: 774 KYQKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATIRGENE 822
Query: 1020 LWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV---- 1075
LWL + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 823 LWLGLAMMSGDLDRLTPSQLAAAISAIITEPPRPDTWCN----YPPVPEVIDILRQGEGN 878
Query: 1076 ---LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARL 1132
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RL
Sbjct: 879 SPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRL 938
Query: 1133 LRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
LRRT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 939 LRRTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|425448713|ref|ZP_18828557.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 7941]
gi|389763993|emb|CCI09599.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 7941]
Length = 975
Score = 521 bits (1341), Expect = e-144, Method: Compositional matrix adjust.
Identities = 380/1115 (34%), Positives = 536/1115 (48%), Gaps = 246/1115 (22%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L +I+ F++D FQ+S+I A G SVVV APT SGKTLI E A + +R+FYTTP
Sbjct: 11 DLKTIFPFKLDDFQQSAIAALAAGKSVVVCAPTGSGKTLIGEYAIYRALERGKRVFYTTP 70
Query: 211 LKALSNQKFREFRETFGDN-------------NVGLLTGDSAINREAQILIMTTEILRNM 257
LKALSNQKFR+F+E FG VGL+TGD IN A I++MTTEI RNM
Sbjct: 71 LKALSNQKFRDFQEKFGRTPTDGDEDSPLLFAEVGLITGDVVINPSALIVVMTTEIFRNM 130
Query: 258 LYQS-VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316
LYQ+ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSAT+ N
Sbjct: 131 LYQTPIGEVG--TSLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSATIGN 188
Query: 317 ADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 365
EL WI + ELI S RPVPL +YF+ K L PLLD K +N
Sbjct: 189 PGELTDWINWVRQLRQPSDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQSKVN 248
Query: 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 425
KL S+V G RR ++R
Sbjct: 249 PKLH--------SKV---GHGKPRR------------------------------LKRED 267
Query: 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV---------- 475
P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 268 CPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLIFFLE 327
Query: 476 ------ELALKRFRILYP------------------------------------------ 487
ELAL F + P
Sbjct: 328 DNPNLQELALSFFAVENPPLHQKLLAFFANNPQSEDQLLSLLTADPETKNQLFEFLASAS 387
Query: 488 DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPART V
Sbjct: 388 QLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPARTTV 447
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L A E
Sbjct: 448 ISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAIAQPE 507
Query: 608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV 667
PL S F SYGMVLNLL SLEE + L+E+SF Y+
Sbjct: 508 PLQSCFAPSYGMVLNLL-------------------QKHSLEETKDLLERSFAEYL---- 544
Query: 668 MLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTEL 727
A+ +L +++ LT+E++ +D E+A ++ E+ F E
Sbjct: 545 ---ARLKLSPERQQITALTTELAK--LD------------MELAGIER----EQVFSYEK 583
Query: 728 RRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM 787
R + K + E + + + +P + +G L +K
Sbjct: 584 LRERLREEERLYKILASQAEA----------QKRQEIHLKLPNIPVGTILHLKGKHIKVP 633
Query: 788 ASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVAL 847
+ F +N L + V+ V LGSDN WY I + + GF A
Sbjct: 634 VPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDQ-GFLTPA- 681
Query: 848 AQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSLNVPVLSS 901
A G+ +P ++ L KGE + +AD + G+ V L++
Sbjct: 682 ALGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------PPVAELAT 728
Query: 902 LSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKR 961
S+ E+++ H ++R RL K Y + + K + +IK
Sbjct: 729 QSQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDREIARDKLHKTQIKY 775
Query: 962 LKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELW 1021
K +S++ W+EFL + ++ E +AL+ + PLGE AA IRGENELW
Sbjct: 776 QKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATIRGENELW 824
Query: 1022 LAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV------ 1075
L + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 825 LGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGNSP 880
Query: 1076 -LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLR 1134
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLR
Sbjct: 881 GLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLR 940
Query: 1135 RTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
RT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 941 RTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|425460627|ref|ZP_18840108.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9808]
gi|389826671|emb|CCI22669.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9808]
Length = 975
Score = 520 bits (1339), Expect = e-144, Method: Compositional matrix adjust.
Identities = 379/1115 (33%), Positives = 534/1115 (47%), Gaps = 246/1115 (22%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L +I+ F++D FQ+S+I A G SVVV APT SGKTLI E A + +R+FYTTP
Sbjct: 11 DLKTIFPFKLDDFQQSAIAALAAGKSVVVCAPTGSGKTLIGEYAIYRALERGKRVFYTTP 70
Query: 211 LKALSNQKFREFRETFGDN-------------NVGLLTGDSAINREAQILIMTTEILRNM 257
LKALSNQKFR+F+E FG VGL+TGD IN A I++MTTEI RNM
Sbjct: 71 LKALSNQKFRDFQEKFGRTPTDGDEDSPLLFAEVGLITGDVVINPSALIVVMTTEIFRNM 130
Query: 258 LYQS-VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316
LYQ+ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSAT+ N
Sbjct: 131 LYQTPIGEVG--TSLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSATIGN 188
Query: 317 ADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 365
EL WI + ELI S RPVPL +YF+ K L PLLD K +N
Sbjct: 189 PGELTDWINWVRQLRQPSDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQSKVN 248
Query: 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 425
KL S+V G RR ++R
Sbjct: 249 PKLH--------SKV---GHGKPRR------------------------------LKRED 267
Query: 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV---------- 475
P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 268 CPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLIFFLE 327
Query: 476 ------ELALKRFRILYP------------------------------------------ 487
ELAL F + P
Sbjct: 328 DNPNLQELALSFFAVENPPLHQKLLAFFANNPQSEDQLLSLLTADPETKNQLFEFLASAS 387
Query: 488 DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPART V
Sbjct: 388 QLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPARTTV 447
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L A E
Sbjct: 448 ISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLAIAQPE 507
Query: 608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV 667
PL S F SYGMVLNLL SLEE + L+E+SF Y+
Sbjct: 508 PLQSCFAPSYGMVLNLL-------------------QKHSLEETKDLLERSFAEYL---- 544
Query: 668 MLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTEL 727
A+ +L +++ LT+E++ +D E+A ++ E+ F E
Sbjct: 545 ---ARLKLSPERQQITALTTELAK--LD------------MELAGIER----EQVFSYEK 583
Query: 728 RRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM 787
R + K + E + + + +P + +G L +K
Sbjct: 584 LRERLREEERLYKILASQAEA----------QKRQEIHLKLPNIPVGTILHLKGKHIKVP 633
Query: 788 ASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVAL 847
+ F +N L + V+ V LGSDN WY I + R GF A
Sbjct: 634 VPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDR-GFLTPA- 681
Query: 848 AQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSLNVPVLSS 901
A G+ +P ++ L KGE + +AD + G+ V L++
Sbjct: 682 ALGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------PPVAELAT 728
Query: 902 LSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKR 961
S+ E+++ H ++ R ++IAR K + +IK
Sbjct: 729 QSQKIEIVNSQIAAHPLQKHKNPGRLMKLYYDREIARD-------------KLHKTQIKY 775
Query: 962 LKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELW 1021
K +S++ W+EFL + ++ E +AL+ + PLGE AA IRGENELW
Sbjct: 776 QKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATIRGENELW 824
Query: 1022 LAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV------ 1075
L + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 825 LGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGNSP 880
Query: 1076 -LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLR 1134
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLR
Sbjct: 881 GLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLR 940
Query: 1135 RTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
RT+D+L QIP++P V L+ NA A M R P+
Sbjct: 941 RTVDVLWQIPQIPRVSPVLKDNARLAVTAMKRFPL 975
>gi|422304231|ref|ZP_16391578.1| putative helicase [Microcystis aeruginosa PCC 9806]
gi|389790698|emb|CCI13449.1| putative helicase [Microcystis aeruginosa PCC 9806]
Length = 975
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 378/1117 (33%), Positives = 532/1117 (47%), Gaps = 250/1117 (22%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L +I+ F++D FQ+S+I A G SVVV APT SGKTLI E A + +R+FYTTP
Sbjct: 11 DLKTIFPFKLDDFQQSAIAALAAGKSVVVCAPTGSGKTLIGEYAIYRALERGKRVFYTTP 70
Query: 211 LKALSNQKFREFRETFGDN-------------NVGLLTGDSAINREAQILIMTTEILRNM 257
LKALSNQKFR+F+E FG VGL+TGD IN A I++MTTEI RNM
Sbjct: 71 LKALSNQKFRDFQEKFGRTPTDGDEDSPLLFAEVGLITGDVVINPSALIVVMTTEIFRNM 130
Query: 258 LYQS-VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316
LYQ+ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSAT+ N
Sbjct: 131 LYQTPIGEVG--TSLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSATIGN 188
Query: 317 ADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 365
EL WI + ELI S RPVPL +YF+ K L PLLD K +N
Sbjct: 189 PGELTDWINWVRQLRQSGDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQSKVN 248
Query: 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 425
KL S+V G RR ++R
Sbjct: 249 PKLR--------SKV---GHGKPRR------------------------------LKRED 267
Query: 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV---------- 475
P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 268 CPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLIFFLE 327
Query: 476 ------ELALKRFRILYP------------------------------------------ 487
ELAL F + P
Sbjct: 328 DNPNLQELALSFFAVENPPLHQKLLAFFANNPQSDEQLLSLLTADSETKNQLFEFLASAS 387
Query: 488 DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPART V
Sbjct: 388 QLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPARTTV 447
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L A E
Sbjct: 448 ISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLATAQPE 507
Query: 608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV 667
PL S F SYGMVLNLL SLEE + L+E+SF Y+
Sbjct: 508 PLQSCFAPSYGMVLNLL-------------------QKHSLEEVKDLLERSFAEYL---- 544
Query: 668 MLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEE--LKAEKRFRT 725
A+ +L +++ LT+E++ +D E+A ++ E EK
Sbjct: 545 ---ARLKLSPERQQITALTTELAK--LD------------MELAGIEREQVFSYEKLRER 587
Query: 726 ELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLK 785
K ++ + K E + +P + +G L +K
Sbjct: 588 LREEERLYKILASQAEAQKRQE----------------IHLKLPNIPVGTILHLKGKHIK 631
Query: 786 NMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNV 845
+ F +N L + V+ V LGSDN WY I + R P
Sbjct: 632 VPVPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDRGFLPPA 681
Query: 846 ALAQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSLNVPVL 899
L G+ +P ++ L KGE + +AD + G+ V L
Sbjct: 682 EL--GELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------PPVAEL 726
Query: 900 SSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKI 959
++ ++ E+++ H ++R RL K Y + + K + +I
Sbjct: 727 ATQAQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDRELARDKLHKTQI 773
Query: 960 KRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENE 1019
K K +S++ W+EFL + ++ E +AL+ + PLGE AA IRGENE
Sbjct: 774 KYQKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATIRGENE 822
Query: 1020 LWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV---- 1075
LWL + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 823 LWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGN 878
Query: 1076 ---LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARL 1132
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RL
Sbjct: 879 SPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRL 938
Query: 1133 LRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
LRRT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 939 LRRTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|425455182|ref|ZP_18834907.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9807]
gi|389803963|emb|CCI17159.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9807]
Length = 975
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 379/1117 (33%), Positives = 533/1117 (47%), Gaps = 250/1117 (22%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+ +I+ F++D FQ+S+I A G SVVV APT SGKTLI E A + +R+FYTTP
Sbjct: 11 DFKTIFPFKLDDFQQSAIAALAAGKSVVVCAPTGSGKTLIGEYAIYRALERGKRVFYTTP 70
Query: 211 LKALSNQKFREFRETFGDN-------------NVGLLTGDSAINREAQILIMTTEILRNM 257
LKALSNQKFR+F+E FG VGL+TGD IN A I++MTTEI RNM
Sbjct: 71 LKALSNQKFRDFQEKFGRTPTDGDEDSPLLFAEVGLITGDVVINPSALIVVMTTEIFRNM 130
Query: 258 LYQS-VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316
LYQ+ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSAT+ N
Sbjct: 131 LYQTPIGEVG--TSLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSATIGN 188
Query: 317 ADELAGWIGQIH-----------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 365
EL WI + ELI S RPVPL +YF+ K L PLLD K +N
Sbjct: 189 PGELTDWINWVRQLRQPSDNKQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQSKVN 248
Query: 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 425
KL S+V G RR ++R
Sbjct: 249 PKLR--------SKV---GHGKPRR------------------------------LKRED 267
Query: 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV---------- 475
P + + LR +DMLPAI+ IF+R+GCD A++ L++ NL++ E +
Sbjct: 268 CPTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLIFFLE 327
Query: 476 ------ELALKRFRILYP------------------------------------------ 487
ELAL F + P
Sbjct: 328 DNPNLQELALSFFAVENPPLHQKLLAFFANNPQSDEQLLSLLTAAPETKNQLFEFLASAS 387
Query: 488 DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPART V
Sbjct: 388 QLVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPARTTV 447
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
+S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L A E
Sbjct: 448 ISALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLATAQPE 507
Query: 608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV 667
PL S F SYGMVLNLL SLEE + L+E+SF Y+
Sbjct: 508 PLQSCFAPSYGMVLNLL-------------------QKHSLEETKDLLERSFAEYL---- 544
Query: 668 MLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEE--LKAEKRFRT 725
A+ +L +++ LT+E++ +D E+A ++ E EK
Sbjct: 545 ---ARLKLSPERQQITALTTELAK--LD------------MELAGIEREQVFSYEKLRER 587
Query: 726 ELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLK 785
K ++ + K E + +P + +G L +K
Sbjct: 588 LREEERLYKILASQSEAQKRQE----------------IHLKLPNIPVGTILHLKGKHIK 631
Query: 786 NMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNV 845
+ F +N L + V+ V LGSDN WY I + R GF
Sbjct: 632 VPVPVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDR-GFITP 680
Query: 846 ALAQGDALPRETMSLLLD---KGEMLWEKLAD---SEFGGLWCMEGSLETWSWSLNVPVL 899
A A G+ +P ++ L KGE + +AD + G+ V L
Sbjct: 681 A-ALGELIPPSLEAVSLGGWRKGEENTQAIADLIPQQVQGI-------------PPVAEL 726
Query: 900 SSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKI 959
++ ++ E+++ H ++R RL K Y + + K + +I
Sbjct: 727 ATQAQKIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDREIARDKLHKTQI 773
Query: 960 KRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENE 1019
K K +S++ W+EFL + ++ E +AL+ + PLGE AA IRGENE
Sbjct: 774 KYQKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATIRGENE 822
Query: 1020 LWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV---- 1075
LWL + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 823 LWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGN 878
Query: 1076 ---LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARL 1132
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RL
Sbjct: 879 SPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRL 938
Query: 1133 LRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
LRRT+D+L QIP++P V Q L+ NA A M R P+
Sbjct: 939 LRRTVDVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|425463422|ref|ZP_18842761.1| putative helicase [Microcystis aeruginosa PCC 9809]
gi|389833252|emb|CCI22398.1| putative helicase [Microcystis aeruginosa PCC 9809]
Length = 975
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 380/1112 (34%), Positives = 532/1112 (47%), Gaps = 242/1112 (21%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L +I+ F++D FQ S+I A G SVVV APT SGKTLI E A + +R+FYTTPL
Sbjct: 12 LKTIFPFKLDDFQHSAIAALAAGKSVVVCAPTGSGKTLIGEYAIYRALERGKRVFYTTPL 71
Query: 212 KALSNQKFREFRETFGDN-------------NVGLLTGDSAINREAQILIMTTEILRNML 258
KALSNQKFR+F+E FG VGL+TGD IN A I++MTTEI RNML
Sbjct: 72 KALSNQKFRDFQEKFGRTPTDGDEDSPLLFAEVGLITGDVVINPSALIVVMTTEIFRNML 131
Query: 259 YQS-VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA 317
Y++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSAT+ N
Sbjct: 132 YKTPIGQVGT--SLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSATIGNP 189
Query: 318 DELAGWIG-----------QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366
EL WI Q ELI S RPVPL +YF+ K L PLLD K +N
Sbjct: 190 GELTDWINWVRQLPQPGDNQQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQSKVNP 249
Query: 367 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 426
KL S+V G RR ++R
Sbjct: 250 KLR--------SKVG---HGKPRR------------------------------LKREDC 268
Query: 427 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQ-----------------------YLED 463
P + + LR +DMLPAI+ IF+R+GCD A++ +LED
Sbjct: 269 PTITSIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLIFFLED 328
Query: 464 CNLLDECEMS-----------------------------------EVELALKRFRILYPD 488
L E +S E + L F
Sbjct: 329 NPNLQELTISFFAVENPPLHQKLLAFFANNPQSDEQLLSLLTADPETKNQLFEFLASASQ 388
Query: 489 AVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPART V+
Sbjct: 389 LVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPARTTVI 448
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L A EP
Sbjct: 449 SALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLATAQPEP 508
Query: 609 LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVM 668
L S F SYGMVLNLL SLEEA+ L+E+SF Y+
Sbjct: 509 LQSCFAPSYGMVLNLL-------------------QKHSLEEAKDLLERSFAEYL----- 544
Query: 669 LAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELR 728
A+ +L +++ LT+E++ +D E+A ++ E+ F E
Sbjct: 545 --ARLKLSPERQQITALTTELAK--LD------------MELAGIER----EQVFSYEKL 584
Query: 729 RRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMA 788
R + K I E + + + +P + +G L +K
Sbjct: 585 RERLREEERLYKIIASQSEA----------QKRQEIHLKLPNIPVGTILHLKGKHIKVPV 634
Query: 789 SINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALA 848
+ F +N L + V+ V LGSDN WY I + R GF +A A
Sbjct: 635 PVPAIF-VNTL-------HGAGQVR--TLVCLGSDNRWYLAAYADISEIDR-GF--LAPA 681
Query: 849 Q-GDALPRETMSLLLD---KGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSE 904
+ G+ +P ++ L KGE + +AD + + +E L + ++
Sbjct: 682 ELGELIPPSLAAVSLGGWRKGEENTQAIADFIPQQVQGIPPVVE----------LETQAQ 731
Query: 905 SDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKA 964
E+++ H ++R RL K Y + + K + +IK K
Sbjct: 732 RIEIVNSQIAAHPL-----QKRKNPGRLMKLY--------YDREIARDKLHKAQIKYQKQ 778
Query: 965 RSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAM 1024
+S++ W+EFL + ++ E +AL+ + PLGE AA IRGENELWL +
Sbjct: 779 QSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATIRGENELWLGL 827
Query: 1025 VLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV-------LD 1077
+ + L L P+QLAA +++++E + W N Y P VI+++ L
Sbjct: 828 AMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGNSPGLR 883
Query: 1078 EHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTI 1137
E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLRRT+
Sbjct: 884 EVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLRRTV 943
Query: 1138 DLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
D+L QIP++P V Q L+ NA A M R P+
Sbjct: 944 DVLWQIPQIPRVSQVLKDNARLAVTAMKRFPL 975
>gi|166364041|ref|YP_001656314.1| putative helicase [Microcystis aeruginosa NIES-843]
gi|166086414|dbj|BAG01122.1| putative helicase [Microcystis aeruginosa NIES-843]
Length = 975
Score = 511 bits (1315), Expect = e-141, Method: Compositional matrix adjust.
Identities = 377/1121 (33%), Positives = 529/1121 (47%), Gaps = 260/1121 (23%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L +I+ F++D FQ S+I A G SVVV APT SGKTLI E A + +R+FYTTPL
Sbjct: 12 LKTIFPFKLDDFQHSAIAALAAGKSVVVCAPTGSGKTLIGEYAIYRALERGKRVFYTTPL 71
Query: 212 KALSNQKFREFRETFGDN-------------NVGLLTGDSAINREAQILIMTTEILRNML 258
KALSNQKFR+F+E FG VGL+TGD IN A I++MTTEI RNML
Sbjct: 72 KALSNQKFRDFQEKFGRTPTDGDEDSPLLFAEVGLITGDVVINPSALIVVMTTEIFRNML 131
Query: 259 YQS-VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA 317
Y++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++ LSAT+ N
Sbjct: 132 YKTPIGQVGT--SLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSATIGNP 189
Query: 318 DELAGWIG-----------QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366
EL WI Q ELI S RPVPL +YF+ K L PLLD K +N
Sbjct: 190 GELTDWINWVRQLPQPGDNQQTSSCELINSDFRPVPLRFYFANKEGLFPLLDPKQSKVNP 249
Query: 367 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 426
KL S+V G RR ++R
Sbjct: 250 KLR--------SKVG---HGKPRR------------------------------LKREDC 268
Query: 427 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQ-----------------------YLED 463
P + + LR +DMLPAI+ IF+R+GCD A++ +LED
Sbjct: 269 PTIASIVTTLRDKDMLPAIYVIFSRKGCDQAIRELKNLNLVNPEEARAIYYRLLIFFLED 328
Query: 464 CNLLDECEMS-----------------------------------EVELALKRFRILYPD 488
L E +S E + L F
Sbjct: 329 NPNLQELTISFFAVENPPLHQKLLAFFANNPQSDEQLLSLLTADPETKNQLFEFLASASQ 388
Query: 489 AVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
VR ++ L +G HHAG LP+WK +E+LF+ GL+KVVFAT TL+AGINMPART V+
Sbjct: 389 LVRADQVEPLTRGCGVHHAGILPLWKELVEQLFEAGLIKVVFATATLSAGINMPARTTVI 448
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
S+LSKRT G LT +E Q+AGRAGRRG+D GHVV VQTP+EGA+E L A EP
Sbjct: 449 SALSKRTDDGHSMLTPSEFVQIAGRAGRRGMDAVGHVVTVQTPFEGAKEAAFLATAQPEP 508
Query: 609 LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVM 668
L S F SYGMVLNLL SLEEA+ L+E+SF Y+ +
Sbjct: 509 LQSCFAPSYGMVLNLL-------------------QKHSLEEAKDLLERSFAEYLARLKL 549
Query: 669 LAAKDELCKIQKETDVLTSEISDDAIDRKS---------RRLLSEAAYKEMANLQEELKA 719
+ ++ + E L E++ I+R+ R E YK +A+ E K
Sbjct: 550 SPERQQITALTTELAKLDMELA--GIEREQVFSYEKLRERLREEERLYKIIASQSEAQK- 606
Query: 720 EKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSL 779
R+ + LK + I+ + H+ V VPA+++
Sbjct: 607 --------RQEIHLKLPNIPVGIILHLKGKHI-----------KVPVPVPAIFVNTLHG- 646
Query: 780 DSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYR 839
+ +++ + V LGSDN WY I + R
Sbjct: 647 -AGQVRTL------------------------------VCLGSDNRWYLAAYADISEIDR 675
Query: 840 IGFPNVALAQ-GDALPRETMSLLLD---KGEMLWEKLADSEFGGLWCMEGSLETWSWSLN 895
GF +A A+ G+ +P ++ L KGE + +AD + + +E
Sbjct: 676 -GF--LAPAELGELIPPSLAAVSLGGWRKGEENTQAIADFIPQQVQGIPPVVE------- 725
Query: 896 VPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFT 955
L + ++ E+++ H ++R RL K Y + + K
Sbjct: 726 ---LETQAQKIEIINSQIAAHPL-----QKRKNPGRLMKLY--------YDREIARDKLH 769
Query: 956 EEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIR 1015
+ +IK K +S++ W+EFL + ++ E +AL+ + PLGE AA IR
Sbjct: 770 KTQIKYQKQQSRKSYY---------WEEFLNLIEILREFQALE--GYLPTPLGEAAATIR 818
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 1075
GENELWL + + + L L P+QLAA +++++E + W N Y P VI+++
Sbjct: 819 GENELWLGLAMMSGDLDRLTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQ 874
Query: 1076 -------LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 1128
L E R + Q ++ + IP L++Q G+ WA G +W E+ + +LD+GD
Sbjct: 875 GEGNSPGLREVRRLLYQAQSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGD 934
Query: 1129 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
L RLLRRT+D+L QIP++P V L+ NA A M R P+
Sbjct: 935 LVRLLRRTVDVLWQIPQIPRVSPVLKDNARLAVTAMKRFPL 975
>gi|428769820|ref|YP_007161610.1| DSH domain-containing protein [Cyanobacterium aponinum PCC 10605]
gi|428684099|gb|AFZ53566.1| DSH domain protein [Cyanobacterium aponinum PCC 10605]
Length = 974
Score = 498 bits (1281), Expect = e-137, Method: Compositional matrix adjust.
Identities = 377/1117 (33%), Positives = 528/1117 (47%), Gaps = 253/1117 (22%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
+I+ +++D+FQ+ +I SVVV+APT SGKT+I E A + N +R+FYTTPLKA
Sbjct: 10 TIFPYQLDEFQQEAISYLDENKSVVVTAPTGSGKTMIGEYAIYRALTNGKRVFYTTPLKA 69
Query: 214 LSNQKFREFRETFGDN---------NVGLLTGDSAINREAQILIMTTEILRNMLYQS-VG 263
LSNQKFR+F++ FG +GL+TGD+ IN A ++IMTTEI RNMLY + +G
Sbjct: 70 LSNQKFRDFQDKFGQTWLENLGVYAEIGLITGDTIINPNAPVVIMTTEIFRNMLYSTPIG 129
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
V + + DV +VLDE HY+SD+SRGTVWEE IIYCP +Q++ LSAT+ N ++L W
Sbjct: 130 EVG--TSVQDVQTVVLDECHYISDMSRGTVWEESIIYCPSHIQLVALSATIGNPEDLCRW 187
Query: 324 IGQI------HGKTE---LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQ 374
I + GK L+ S RPVPL +YFS L PL EK ++ L LN
Sbjct: 188 INSVRKANLQQGKVSECVLVNSDFRPVPLKFYFSHSRGLFPLFSEKN---SQNLKLN--- 241
Query: 375 LSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW 434
S++K R R S++ P + +
Sbjct: 242 ---SQLKRLLATNKRGRFSQRDC-----------------------------PSIKTIVQ 269
Query: 435 HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLD--------------------ECEMSE 474
L + +MLPAI+ IF+RRGCD AV+ L NL+ E +
Sbjct: 270 QLSNNNMLPAIYIIFSRRGCDQAVESLSYLNLVTVEESRKILLYLLYFLMIENLELQAKI 329
Query: 475 VELALKRFRILY--------------------------------------PDAVREPAIK 496
+E A K I Y + R I+
Sbjct: 330 IEFAKKEHEIAYNKIIDFIANEKEAGEALVDYLIDKPIFKERLLRFLAEHSEVARTNQIE 389
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+A+HHAG LP WK +E LF+ GLVK+VFAT TLAAGINMPART V+S+L KR+
Sbjct: 390 PLTRGIASHHAGILPAWKELVERLFELGLVKIVFATATLAAGINMPARTTVISALKKRSD 449
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
G LT +E Q+AGRAGRRG+D G+VV VQTP+EGA KL A EPL SQFT S
Sbjct: 450 DGHRLLTPSEFLQIAGRAGRRGMDKVGYVVTVQTPFEGALVASKLAKATPEPLRSQFTPS 509
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELC 676
YGMVLNLL S+EEA++L+E SF Y+ + +D +
Sbjct: 510 YGMVLNLL-------------------QKHSIEEAKELLELSFAEYLAEIQLSPQEDAIA 550
Query: 677 KIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRF 736
T+EI+ I L+E KE+A E+LK RR+ E
Sbjct: 551 S-------YTTEITRLDIS------LAEFNSKEIAAY-EKLKE--------RRKQE---- 584
Query: 737 SALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFAL 796
K +LK FE LQ K L + + L + SI D L
Sbjct: 585 ---KKVLKLFERN-----WLQQKQKS---------ILPQLEDL------KIGSILD---L 618
Query: 797 NRLAQSNGDDYDTQDVKPSYYV--------ALGSDNTWYTFTEKWIKTVYRIGFPNVALA 848
+R + N Y+TQ V +Y V LG DN WY + F +V
Sbjct: 619 SRHHKKNA--YETQGVFVNYVVNGNQRFLLCLGKDNNWYLAS-----------FTDVVDI 665
Query: 849 QGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEV 908
+P + L EKL E + E + +N SL+ S +
Sbjct: 666 NSGRIP-----------DSLIEKLYLPE---------TPEIRAGMINSGDEQSLTVSQLI 705
Query: 909 LHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKR 968
+ E D E Q ++ ++ IA + + I VK K ++LK R
Sbjct: 706 AEYAQESVDKSEEIIYQIQRIEEVEAAIA-SHPLDKIDNINQIVK-NNRKRQQLKQELSR 763
Query: 969 LTKRIEQIEPSG---WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMV 1025
+ + ++ + + W+EFL + ++ E AL+ PLG AA IRGENELWL +
Sbjct: 764 IQSQYQRYKANSSYYWQEFLALIEILREFGALEGYQPT--PLGIAAATIRGENELWLGLA 821
Query: 1026 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV---------- 1075
L + L L P LA V +L +E ++ W + Y+PS V++ + V
Sbjct: 822 LTSHRLDYLTPHHLAGVITALTTESLRSDTWVS----YQPSPEVLDALGVQKMDDVSYSP 877
Query: 1076 ---LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARL 1132
L E R + Q + + +P L+ G+ EAW G +W E+ + LD+GD+ R+
Sbjct: 878 ESELWEIRRKLYQAQTRRDISMPVWLERDLIGLAEAWCLGASWEEICNNTTLDEGDIVRV 937
Query: 1133 LRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
LRRT+D+L QIP++P +D L + A +A+ M R PI
Sbjct: 938 LRRTVDVLVQIPQVPSLDFSLIQTAKEAAKSMKRFPI 974
>gi|428771864|ref|YP_007163652.1| DSH domain-containing protein [Cyanobacterium stanieri PCC 7202]
gi|428686143|gb|AFZ46003.1| DSH domain protein [Cyanobacterium stanieri PCC 7202]
Length = 970
Score = 497 bits (1280), Expect = e-137, Method: Compositional matrix adjust.
Identities = 363/1116 (32%), Positives = 531/1116 (47%), Gaps = 249/1116 (22%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+ +++ +++D FQ +I +G SV+V+APT SGKTLI E A + + +R+FYTTP
Sbjct: 7 DFKTVFPYQLDDFQVDAIALLDQGKSVLVTAPTGSGKTLIGEYAIYRALNSGQRVFYTTP 66
Query: 211 LKALSNQKFREFRETFGDN---------NVGLLTGDSAINREAQILIMTTEILRNMLYQS 261
LKALSNQKFR+F+E FG +GL+TGD +IN EA I++MTTEI RNMLY +
Sbjct: 67 LKALSNQKFRDFQEKFGQTPIAESGLYAEIGLITGDVSINPEAPIVVMTTEIFRNMLYST 126
Query: 262 -VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 320
+G V + + +V +VLDE HY++D RGTVWEE IIYCP +Q++ LSATV N +L
Sbjct: 127 PIGEVGT--SVRNVQSVVLDECHYINDPGRGTVWEESIIYCPPHIQLVALSATVGNPQQL 184
Query: 321 AGWIGQIH---------GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 371
WI + + EL+ S RPVPL +YFS L L +K +N +L
Sbjct: 185 CDWINHVRRCHFQQGDFSRCELVNSDFRPVPLKFYFSHSKGLQNLFKDKTDKINPQLK-- 242
Query: 372 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 431
S ++P K G R++ P V
Sbjct: 243 ------SLLRPNKRGRFDRKS---------------------------------CPTVKG 263
Query: 432 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLD--------------------ECE 471
L +++MLPAI+ IF+R+GCD AV+ L NL+ E +
Sbjct: 264 LTQQLNNQNMLPAIYIIFSRKGCDQAVESLNYVNLVSIEESKKILSYLLKFLLLESIELQ 323
Query: 472 MSEVELALKRFRILY--------------------------------------PDAVREP 493
VE A K I Y + VR
Sbjct: 324 DKIVEFARKEHEITYDKIINFVTGKENAESELIEFLTEKPLLKERILRFLGDNSELVRSS 383
Query: 494 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
I+ L +G+AAHHAG LP WK +E LF++GL+K+VFAT TLAAGINMPART ++S+L K
Sbjct: 384 QIEPLTRGIAAHHAGILPAWKELVERLFEQGLIKIVFATATLAAGINMPARTTIISALRK 443
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQF 613
R G LT +E Q+AGRAGRRG+D+ G+VV VQTPYEG KL A E L S F
Sbjct: 444 RGDDGIRTLTPSEFLQIAGRAGRRGMDDVGYVVTVQTPYEGVLIASKLAKAEPEALRSWF 503
Query: 614 TASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKD 673
T SYGMVLNLL ++EEA++L+E SF Y+ A++
Sbjct: 504 TPSYGMVLNLLQK-------------------HTIEEAKQLLELSFAEYL-------AQE 537
Query: 674 ELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAY--KEMAN---LQEELKAEKRFRTELR 728
+L ++ T EI+ R + A Y KE+A+ L+E LK EK+ +
Sbjct: 538 QLNPQEEAIASYTREIT--------RLDVGLAGYNSKELASYEKLKERLKQEKKILKLFQ 589
Query: 729 RRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMA 788
+ +R ALK S+P + G SL+ KN A
Sbjct: 590 KNWRQQRVEALKP-------------------------SIPNLVPGNILSLNRQGKKN-A 623
Query: 789 SINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALA 848
I ++ + +++ +N D ++++LG DN WY I +V I + +
Sbjct: 624 YIIEAVLMGKISHNNQD----------FFLSLGKDNNWY------IASVSDI----IDIN 663
Query: 849 QGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVP-VLSSLSESDE 907
G P ++ L + E + G C G + + S +P + +E
Sbjct: 664 SGKMPPNLVENIYLPEIENI--------SAGQLCA-GDAASEAISRLIPDYEKEYTPINE 714
Query: 908 VLHMSFEYHDAVENYKEQRT--KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKAR 965
+ + + + VEN +Q KV ++ + + + K+ + T++ +K+K +
Sbjct: 715 EITLQEKRIEEVENLIKQNPLDKVEKIGQLMRNNRKRQNLKQELTTIQNQYQKVKSHSSY 774
Query: 966 SKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMV 1025
W+EFL + +++ E AL PLGE AA IRGENELWLA+
Sbjct: 775 Y--------------WQEFLALVDILREFGALKEFEPT--PLGEAAAVIRGENELWLALA 818
Query: 1026 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV---------- 1075
L + L L P LA +L+++ + W Y+PS V++ + +
Sbjct: 819 LTSGHLDFLPPHHLAPAITALITDPPRFDTW----VAYQPSPQVLDALGLVKIEDEYNPE 874
Query: 1076 --LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 1133
L E R + Q K + +P L+ G+ EAW G+TW E+ + LD+GD+ R+L
Sbjct: 875 EQLRETRRKLYQAQNKKDITMPVYLERDVIGLSEAWCLGVTWDELCSNTTLDEGDIVRIL 934
Query: 1134 RRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
RRT+D+L QIP++P ++ RL A DA M R PI
Sbjct: 935 RRTVDVLWQIPQVPGINSRLADTARDAFAKMKRFPI 970
>gi|16332264|ref|NP_442992.1| antiviral protein [Synechocystis sp. PCC 6803]
gi|383324005|ref|YP_005384859.1| antiviral protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383327174|ref|YP_005388028.1| antiviral protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383493058|ref|YP_005410735.1| antiviral protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384438326|ref|YP_005653051.1| antiviral protein [Synechocystis sp. PCC 6803]
gi|451816415|ref|YP_007452867.1| antiviral protein [Synechocystis sp. PCC 6803]
gi|1653894|dbj|BAA18804.1| antiviral protein [Synechocystis sp. PCC 6803]
gi|339275359|dbj|BAK51846.1| antiviral protein [Synechocystis sp. PCC 6803]
gi|359273325|dbj|BAL30844.1| antiviral protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359276495|dbj|BAL34013.1| antiviral protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359279665|dbj|BAL37182.1| antiviral protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|451782384|gb|AGF53353.1| antiviral protein [Synechocystis sp. PCC 6803]
Length = 1006
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 364/1140 (31%), Positives = 530/1140 (46%), Gaps = 266/1140 (23%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A ++ F +D FQ+ +I A + SVVV APT SGKT++ E A +A +R+FYTTPLK
Sbjct: 10 ADLFAFPLDDFQQEAIAALDQDQSVVVCAPTGSGKTVVGEYAIYRAIARGKRVFYTTPLK 69
Query: 213 ALSNQKFREFR---ETFGDNN----VGLLTGDSAINREAQILIMTTEILRNMLYQS-VGM 264
ALSNQK R+F+ E G N VGL+TGD+ IN +A +++MTTEI RNMLY++ +G
Sbjct: 70 ALSNQKIRDFQEKLEKLGLENAAQLVGLITGDTVINADAPVVVMTTEIFRNMLYETPIGE 129
Query: 265 VSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
V + L DV+ +V DEVHY+SD RGTVWEE IIYCP +Q++ LSAT+ N ++L WI
Sbjct: 130 VG--TSLEDVETVVFDEVHYISDRGRGTVWEESIIYCPSTIQLVGLSATIGNPEQLTEWI 187
Query: 325 GQIHGKTE-----------------LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRK 367
Q+ L+ S RPVPLT+++ST+ L PLL+EK +N +
Sbjct: 188 NQVRTGVSLKVLRQGEQRNDSPPCVLVNSDFRPVPLTFHYSTRKGLFPLLNEKKTGVNTR 247
Query: 368 LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 427
L L + K + G +RR +RR P
Sbjct: 248 L------LPKAGNKNTRSGKNRR------------------------------MRREDCP 271
Query: 428 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF----- 482
+ + L+ R++LP I+ IF+RRGC+ A Q LED +L++ E ++L L F
Sbjct: 272 YPLLVMQQLQERNLLPVIYVIFSRRGCEQAAQSLEDLSLVEPAEQESIQLQLLDFFFGKN 331
Query: 483 --------RIL---YPDAVR-----------EPAIKGLLKGVAAHHAGCLPIW------- 513
R L PD V+ A + LL +A G +W
Sbjct: 332 PLLRQKLERDLANGLPDLVQAVVAYLDHPQDSEAAQRLLTALAIDPEGMFKLWGWIAQSS 391
Query: 514 --------------------------KSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
K+ +E+LF++GL+KVVFAT TL+AGINMPART V
Sbjct: 392 PMTRFEQIEPLLRGIAVHHAGILPDMKTLVEKLFEQGLIKVVFATATLSAGINMPARTTV 451
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
+S+LSKRT G L+ +E Q+AGRAGRRG+D GHV+ VQTP+EGA E L A E
Sbjct: 452 ISALSKRTNEGHAMLSPSEFLQIAGRAGRRGMDTEGHVITVQTPFEGANEASYLALAEAE 511
Query: 608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV 667
PL S FT SYGMVLNLL LEE + L+E+SF Y+
Sbjct: 512 PLKSWFTPSYGMVLNLL-------------------QKHDLEEVKSLLERSFAEYLAQFA 552
Query: 668 MLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTEL 727
+ K + + K+ L +++ + E + + L+ E+R L
Sbjct: 553 LEPTKVAIAETVKKLSQLDIKLAG----------IGEKDLRSYEKFRGRLREEQRLLKIL 602
Query: 728 RRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM 787
+ E +R LKD LK G L +L G+ + +L
Sbjct: 603 EEQAEKERKQQLKDQLKTLAPGQLLYLK------------------GRHVKIHQPRL--- 641
Query: 788 ASINDSFA-LNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVA 846
A I A + L Q + LGSDN WY T + +Y + N++
Sbjct: 642 AVIVAPLAPAHNLPQ---------------WCCLGSDNRWYHVT---VGDIYAVPIGNLS 683
Query: 847 LAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNV-PVLSSLSES 905
AQ L LL ++G ET + + + P L S
Sbjct: 684 PAQWQHLTPPPAELLAPGK----------------SVKGDEETLAIAAGLDPQTYPLEPS 727
Query: 906 DEVLHMSFEYHDAVENYKEQRTKVARLKKKIA--RTEGFKEYKKIVDTVKFTEEKIKRLK 963
E++ EQ+ +V ++K +A K K+++ +E K L
Sbjct: 728 PELV--------------EQQARVDHVEKLLAVHPLASQKHPGKLLEQFHQRQELRKTLS 773
Query: 964 ARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLA 1023
R + R++ + W+EFL + +++ E AL+ T + LGE AA +RGENELWL
Sbjct: 774 KRQQEY-DRLQSRQSYYWQEFLDLIDILQEMEALEEYTPTL--LGEVAATLRGENELWLG 830
Query: 1024 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN--------- 1074
+ L + DL+P QLAA ++L++E + W + ++PS V+ +
Sbjct: 831 LALISGKFNDLEPEQLAAAASALITETPRSDAWTD----FKPSPVVLAALRPSNDLFGLL 886
Query: 1075 ----------------VLDEH---------RSSFLELQEKHGVEIPCCLDSQFSGMVEAW 1109
+ +H R ++ Q + + IP L+ F G+VE W
Sbjct: 887 FCLKHPQPPLALWQAMTVADHLQRLNLWDLRRKLIKAQNQRAIAIPLWLEVDFMGLVEQW 946
Query: 1110 ASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
A G+ W + +LD+GDL RL RRT+DLL QIP++P + RL++NA A M R P+
Sbjct: 947 ALGMEWENLCRQTSLDEGDLVRLFRRTVDLLWQIPQVPHLSPRLKRNARIAVQQMKRFPL 1006
>gi|407960082|dbj|BAM53322.1| antiviral protein [Bacillus subtilis BEST7613]
Length = 1010
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 364/1140 (31%), Positives = 530/1140 (46%), Gaps = 266/1140 (23%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A ++ F +D FQ+ +I A + SVVV APT SGKT++ E A +A +R+FYTTPLK
Sbjct: 14 ADLFAFPLDDFQQEAIAALDQDQSVVVCAPTGSGKTVVGEYAIYRAIARGKRVFYTTPLK 73
Query: 213 ALSNQKFREFR---ETFGDNN----VGLLTGDSAINREAQILIMTTEILRNMLYQS-VGM 264
ALSNQK R+F+ E G N VGL+TGD+ IN +A +++MTTEI RNMLY++ +G
Sbjct: 74 ALSNQKIRDFQEKLEKLGLENAAQLVGLITGDTVINADAPVVVMTTEIFRNMLYETPIGE 133
Query: 265 VSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
V + L DV+ +V DEVHY+SD RGTVWEE IIYCP +Q++ LSAT+ N ++L WI
Sbjct: 134 VG--TSLEDVETVVFDEVHYISDRGRGTVWEESIIYCPSTIQLVGLSATIGNPEQLTEWI 191
Query: 325 GQIHGKTE-----------------LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRK 367
Q+ L+ S RPVPLT+++ST+ L PLL+EK +N +
Sbjct: 192 NQVRTGVSLKVLRQGEQRNDSPPCVLVNSDFRPVPLTFHYSTRKGLFPLLNEKKTGVNTR 251
Query: 368 LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 427
L L + K + G +RR +RR P
Sbjct: 252 L------LPKAGNKNTRSGKNRR------------------------------MRREDCP 275
Query: 428 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF----- 482
+ + L+ R++LP I+ IF+RRGC+ A Q LED +L++ E ++L L F
Sbjct: 276 YPLLVMQQLQERNLLPVIYVIFSRRGCEQAAQSLEDLSLVEPAEQESIQLQLLDFFFGKN 335
Query: 483 --------RIL---YPDAVR-----------EPAIKGLLKGVAAHHAGCLPIW------- 513
R L PD V+ A + LL +A G +W
Sbjct: 336 PLLRQKLERDLANGLPDLVQAVVAYLDHPQDSEAAQRLLTALAIDPEGMFKLWGWIAQSS 395
Query: 514 --------------------------KSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
K+ +E+LF++GL+KVVFAT TL+AGINMPART V
Sbjct: 396 PMTRFEQIEPLLRGIAVHHAGILPDMKTLVEKLFEQGLIKVVFATATLSAGINMPARTTV 455
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
+S+LSKRT G L+ +E Q+AGRAGRRG+D GHV+ VQTP+EGA E L A E
Sbjct: 456 ISALSKRTNEGHAMLSPSEFLQIAGRAGRRGMDTEGHVITVQTPFEGANEASYLALAEAE 515
Query: 608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV 667
PL S FT SYGMVLNLL LEE + L+E+SF Y+
Sbjct: 516 PLKSWFTPSYGMVLNLL-------------------QKHDLEEVKSLLERSFAEYLAQFA 556
Query: 668 MLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTEL 727
+ K + + K+ L +++ + E + + L+ E+R L
Sbjct: 557 LEPTKVAIAETVKKLSQLDIKLAG----------IGEKDLRSYEKFRGRLREEQRLLKIL 606
Query: 728 RRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM 787
+ E +R LKD LK G L +L G+ + +L
Sbjct: 607 EEQAEKERKQQLKDQLKTLAPGQLLYLK------------------GRHVKIHQPRL--- 645
Query: 788 ASINDSFA-LNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVA 846
A I A + L Q + LGSDN WY T + +Y + N++
Sbjct: 646 AVIVAPLAPAHNLPQ---------------WCCLGSDNRWYHVT---VGDIYAVPIGNLS 687
Query: 847 LAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNV-PVLSSLSES 905
AQ L LL ++G ET + + + P L S
Sbjct: 688 PAQWQHLTPPPAELLAPGK----------------SVKGDEETLAIAAGLDPQTYPLEPS 731
Query: 906 DEVLHMSFEYHDAVENYKEQRTKVARLKKKIA--RTEGFKEYKKIVDTVKFTEEKIKRLK 963
E++ EQ+ +V ++K +A K K+++ +E K L
Sbjct: 732 PELV--------------EQQARVDHVEKLLAVHPLASQKHPGKLLEQFHQRQELRKTLS 777
Query: 964 ARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLA 1023
R + R++ + W+EFL + +++ E AL+ T + LGE AA +RGENELWL
Sbjct: 778 KRQQEY-DRLQSRQSYYWQEFLDLIDILQEMEALEEYTPTL--LGEVAATLRGENELWLG 834
Query: 1024 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN--------- 1074
+ L + DL+P QLAA ++L++E + W + ++PS V+ +
Sbjct: 835 LALISGKFNDLEPEQLAAAASALITETPRSDAWTD----FKPSPVVLAALRPSNDLFGLL 890
Query: 1075 ----------------VLDEH---------RSSFLELQEKHGVEIPCCLDSQFSGMVEAW 1109
+ +H R ++ Q + + IP L+ F G+VE W
Sbjct: 891 FCLKHPQPPLALWQAMTVADHLQRLNLWDLRRKLIKAQNQRAIAIPLWLEVDFMGLVEQW 950
Query: 1110 ASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
A G+ W + +LD+GDL RL RRT+DLL QIP++P + RL++NA A M R P+
Sbjct: 951 ALGMEWENLCRQTSLDEGDLVRLFRRTVDLLWQIPQVPHLSPRLKRNARIAVQQMKRFPL 1010
>gi|126660004|ref|ZP_01731126.1| antiviral protein [Cyanothece sp. CCY0110]
gi|126618682|gb|EAZ89429.1| antiviral protein [Cyanothece sp. CCY0110]
Length = 970
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 370/1115 (33%), Positives = 529/1115 (47%), Gaps = 247/1115 (22%)
Query: 150 DEL--ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
DEL ++ F++D+FQ +I A +G SVVV APT SGKT+I E A + +R+FY
Sbjct: 8 DELNIQDLFPFQLDRFQVEAIAALNKGKSVVVCAPTGSGKTVIGEFATYRALHLSKRVFY 67
Query: 208 TTPLKALSNQKFREFRETFG-------DNNVGLLTGDSAINREAQILIMTTEILRNMLYQ 260
TTPLKALSNQKFR+F+E F ++ VGL+TGD IN A I+IMTTEI RNMLY+
Sbjct: 68 TTPLKALSNQKFRDFQEKFATTEEGIEEDKVGLITGDMVINPNADIVIMTTEIFRNMLYE 127
Query: 261 S-VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADE 319
+ +G V + L +V ++LDE HY+S+ RGTVWEE IIYCP +Q++ LSAT+ N +E
Sbjct: 128 TPIGQVG--TSLENVATVILDECHYISNRGRGTVWEESIIYCPPTIQLVALSATIGNPEE 185
Query: 320 LAGWIGQIHGKT-------------ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366
L WI ++ ELI S RPVPL +YFS K L PLL+++ +N
Sbjct: 186 LTDWINEVRKTAPHVEAEETAISLCELINSDFRPVPLRFYFSQKNGLYPLLNQQQTALNP 245
Query: 367 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 426
+L + ++ I+RS+
Sbjct: 246 RLK-----------------------------------------PKGNRKKRRRIKRSEC 264
Query: 427 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF---- 482
P + + L +D+LPAI+ IF+RR CD AVQ LE L+ E ++ L F
Sbjct: 265 PTPMMVVTQLYEKDLLPAIYVIFSRRECDRAVQKLEGVVLVSPEEAHALQYNLLTFFLAE 324
Query: 483 ------RILYPDAVREPAIKGLLK---------------------------GVAA----- 504
+L A P + LK G+ A
Sbjct: 325 NPNLQETLLKAVATENPPLHDPLKDFLNTLSAQSRLFPYLAEDEDSKIHLFGILADLCQL 384
Query: 505 ---------------HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
HHAG LP+WK +E+LF+ GLVKVVFAT TL+AGINMPART V+S
Sbjct: 385 VRGEQLEPLTRGIAAHHAGILPLWKELVEQLFEVGLVKVVFATATLSAGINMPARTTVIS 444
Query: 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
+LSKR +G LT +E Q+AGRAGRRG+D GHVV +QTP+EGA E L A EPL
Sbjct: 445 ALSKRNDTGHSMLTPSEFLQIAGRAGRRGMDEVGHVVAIQTPFEGATEAAYLATAESEPL 504
Query: 610 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVML 669
S FT SYGMVLNLL +++EA+ L+E+SF Y+
Sbjct: 505 RSCFTPSYGMVLNLL-------------------QKHTIKEAKDLLERSFAEYL------ 539
Query: 670 AAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRR 729
A+ +L Q+ L++E++ I+ L E E L LK EKR L
Sbjct: 540 -AQLKLEPEQQAIANLSTELAKLDIELGG---LQEKDIIEYEKLNARLKEEKRLLKILED 595
Query: 730 RMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYL-GKFDSLDSSKLKNMA 788
+ E KR + L G L VYL GK + +L +
Sbjct: 596 QAEEKRKKEISGQLGQLNIGDL-------------------VYLKGKRLRTSTPQLAVIV 636
Query: 789 SINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALA 848
+ + +G +D + LG +N WY I Y P ++L
Sbjct: 637 A---------MVPGSGQSFD--------LLCLGDNNYWYLVKRGDIVDFYGASLP-LSLI 678
Query: 849 QGDALPRETMSLLLDKG-------EMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSS 901
LP + L L +G + + ++++D FG + E V+
Sbjct: 679 DPLVLP-DLRRLSLGRGPKGDETSKEITKQISDRAFGRITPPE-------------VIEQ 724
Query: 902 LSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKR 961
D+V D + N+ T+G +++K+++ + E ++
Sbjct: 725 QKRIDQV-------QDLLNNH--------------PLTKG-RDFKRLLKSHHRRLELREQ 762
Query: 962 LKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELW 1021
L R + K ++ + W+EFL + ++ E ALD T LG+ AA +RGENELW
Sbjct: 763 LHNRQIKFQK-LQSNQSYYWQEFLNLIEILREFNALDHYTPT--NLGKAAATMRGENELW 819
Query: 1022 LAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRS 1081
L +V + IL L+P QLAA +++++E ++ W N Y PS V+ + E
Sbjct: 820 LGLVFMSGILNHLEPHQLAAAVSAIITETLRPDTWTN----YLPSPEVLKLFRESPEQGV 875
Query: 1082 SFLEL-------QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLR 1134
S E+ Q ++ + IP L+ + G+VE WA G W+E+ + +LD+GDL RLLR
Sbjct: 876 SIGEMRRLLNQTQRRYQITIPVWLELELIGLVEQWALGGDWQELCENTSLDEGDLVRLLR 935
Query: 1135 RTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
RTIDLL QIP+ P + L A +A ++ R PI
Sbjct: 936 RTIDLLWQIPQTPGISNYLAGTAKEAIVLLKRFPI 970
>gi|428312000|ref|YP_007122977.1| superfamily II RNA helicase [Microcoleus sp. PCC 7113]
gi|428253612|gb|AFZ19571.1| superfamily II RNA helicase [Microcoleus sp. PCC 7113]
Length = 901
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 277/626 (44%), Positives = 365/626 (58%), Gaps = 77/626 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L +++ F +D FQ+ +I A G SVVV APT SGKTLI E +A RIFYTTP
Sbjct: 11 DLKTLFPFELDDFQQQAIAALNAGRSVVVCAPTGSGKTLIGEYTIHRALARGGRIFYTTP 70
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+FRE FG VGLLTGD +INR+A IL+MTTEI RNMLY + +G V +
Sbjct: 71 LKALSNQKLRDFRELFGAQQVGLLTGDISINRDAPILVMTTEIFRNMLYGTPIGEVGTS- 129
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L V+ +VLDE HY++D RGTVWEE IIYCP EVQ++ LSATVANAD+L W+ +HG
Sbjct: 130 -LTGVEAVVLDECHYMNDRQRGTVWEESIIYCPPEVQLVALSATVANADQLTEWLNLVHG 188
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
TELI S RPVPL +YF + PLLDE ++ +L KP GG +
Sbjct: 189 ATELIYSDFRPVPLQFYFGNTKGVFPLLDETQTRISPRL------------KPKNKGGKQ 236
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R R + P + L L +RDMLPAI+FIF
Sbjct: 237 RGG------------------------------RPESPHMTYILEQLAARDMLPAIYFIF 266
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD AV+ + D +L++E E ++++ + F P+A R ++ L +G+AAHHAG
Sbjct: 267 SRRGCDRAVEEMGDFSLVNEQETAQLKEKIDEFLSRNPEAGRAGQVEPLYRGIAAHHAGI 326
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK +EELFQ GL+KVVFATETLAAGINMPART V+S+LSKRT G LT++E Q
Sbjct: 327 LPAWKGLVEELFQMGLIKVVFATETLAAGINMPARTTVISTLSKRTDRGHRLLTASEFLQ 386
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
MAGRAGRRG+D G+VV +QTP+EGA+E L AG +PLVSQF+ +YGMVLNLL
Sbjct: 387 MAGRAGRRGMDAIGYVVTLQTPFEGAKEAAYLATAGADPLVSQFSPTYGMVLNLL----- 441
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
S+ EA+ LVE+SF Y+ + + + + ++ E L ++
Sbjct: 442 --------------QTHSVSEAKDLVERSFAQYLATLYLRPQQQAITELTTELTKLDIQL 487
Query: 690 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 749
+ + + R L E LK E+R L + E R + +LKD G
Sbjct: 488 APIEVKQLER----------YEKLSERLKEERRLLKLLENQAEAVRAQEIAQVLKDAPPG 537
Query: 750 HLPFLCLQYKDSEGVEHSVPAVYLGK 775
+ +L ++ V VPAV + K
Sbjct: 538 TILYLKGKHVK---VSSPVPAVLVTK 560
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 111/200 (55%), Gaps = 14/200 (7%)
Query: 981 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 1040
W+EFL + V+ LD T PLG+ AAIRG+NELWL + L + L P LA
Sbjct: 706 WQEFLNLIEVLRAFGCLDNVTPT--PLGKATAAIRGDNELWLGLALMSGEFDHLDPHHLA 763
Query: 1041 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 1100
+LV+E + W N Y P I + L R S L+LQ ++ + P +
Sbjct: 764 GAMCALVTETPRPDSWTN----YLPPEPAIEALVHLKGTRQSLLKLQYRYDISWPIWPEY 819
Query: 1101 QF--------SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 1152
+F G+VE WA G++W ++ + +LD+GD+ R+LRRT+D+L+QIP +P V
Sbjct: 820 KFLDKIVGGLMGLVEQWALGISWTDLCANTSLDEGDVVRILRRTVDILSQIPHVPAVPNS 879
Query: 1153 LQKNAVDASNVMDRPPISEL 1172
L+ NA+ A ++DR P++E+
Sbjct: 880 LRANAIRAIQLLDRFPVNEV 899
>gi|443322322|ref|ZP_21051347.1| superfamily II RNA helicase [Gloeocapsa sp. PCC 73106]
gi|442787927|gb|ELR97635.1| superfamily II RNA helicase [Gloeocapsa sp. PCC 73106]
Length = 1002
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 382/1101 (34%), Positives = 541/1101 (49%), Gaps = 194/1101 (17%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L ++ F +D FQ +I A G SVVV APT SGKTLI E A +A +R+FYTTPL
Sbjct: 13 LKQLFPFELDDFQLQAIAAQDEGDSVVVCAPTGSGKTLIGEYAIYRALAKGKRVFYTTPL 72
Query: 212 KALSNQKFREFRETFGDNN-VGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
KALSNQKFR+F+E F +N+ VGL+TGD I +A +++MTTEI RNMLY++ +G V +
Sbjct: 73 KALSNQKFRDFQEIFTENHQVGLITGDIIIKPDASVVVMTTEIFRNMLYETPIGQVGT-- 130
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH- 328
L DV+ +VLDE HY+SD RGTVWEE IIYC E+Q++ LSAT+ N +EL WI +
Sbjct: 131 SLEDVESVVLDECHYISDPQRGTVWEESIIYCSTEIQLVALSATIGNPEELTDWINSVRT 190
Query: 329 -----GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKL-------SLNYL--- 373
K +LI S RPVPL +YFST L PLL++K +N KL + N L
Sbjct: 191 NQDPPNKCQLINSDFRPVPLRYYFSTVDGLFPLLNQKQNQINSKLKAKSSKKTRNRLRKE 250
Query: 374 ----------QLSTSEVKP-YKDGGSRRRNSRKHADMNSNNIVTS--------------- 407
QLS +E+ P SRR + + S N+V S
Sbjct: 251 DCPSIFQVINQLSQAEMLPAIYIIFSRRGCEQAMQTLASLNLVNSSEEQQIYLTLLRFLL 310
Query: 408 FGQHQLSKNSINAIRRSQVPQ--VIDTLWHLRSRDMLPAIWFIFNRRGCDAAV---QYLE 462
GQ L N + R Q +I L + L F +A + QYLE
Sbjct: 311 LGQSDLRVNFGDFTGRDPELQEKLIVDLGNFGPEPELQEKLLSFLANNPNAELELWQYLE 370
Query: 463 -DCNLLDECEMSEVELA-LKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 520
+ NL + + VE + + R +YP LL+GVA+HHAG LP WK +E+L
Sbjct: 371 KNPNLKQQILIFLVESSEVARIEQIYP----------LLRGVASHHAGLLPPWKELVEKL 420
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F+ GL+KVVFAT TLAAGINMPART V+S+LSKRT SG L+ +E Q+AGRAGRRG D
Sbjct: 421 FELGLIKVVFATATLAAGINMPARTTVISALSKRTESGHSTLSPSEFLQIAGRAGRRGKD 480
Query: 581 NRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMK 640
+ GHVV +QTP+EGAE+ +L A EPLVSQFT SYGMVLNLL
Sbjct: 481 SVGHVVTMQTPFEGAEDAARLATANPEPLVSQFTPSYGMVLNLLQK-------------- 526
Query: 641 ALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS--DDAIDRKS 698
SL E + L+E SF Y+ + +L ++ LTSE++ D +
Sbjct: 527 -----HSLSEIKDLLELSFAEYL-------EQLKLAPSSRKMGELTSELAQLDIKLAELE 574
Query: 699 RRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQY 758
R + + L+E LK E+R L+ + + R A
Sbjct: 575 RSGIGAKEIESYQKLKEHLKEEQRLLELLQHQAQTSRKKA-------------------- 614
Query: 759 KDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYV 818
+ +P + G +L K KN+A + AL L D+ +
Sbjct: 615 -----IAPELPELVPGNIIAL---KGKNIAFASPLTAL--LIDKIPGPGQAPDL-----L 659
Query: 819 ALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFG 878
LG+DN WY T + V + G P + G++ LA + G
Sbjct: 660 CLGADNYWYVATYGDV----------VDINPGFLAPEQI-------GQLSLPDLATIKLG 702
Query: 879 GLWCMEGSLETWSWSLNVPVLSSLSE-SDEVLHMSFEYHDAVENYKEQRTKVARLKKKIA 937
C +G LSE + + + + EQ+ +V ++ KI
Sbjct: 703 R--CGKGD--------------RLSEIVTQTMLKAIVPNLPTPEITEQQQRVDSVQDKI- 745
Query: 938 RTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG----WKEFLRISNVIHE 993
+ K + +K ++++ + K + QI+ S W+EF+ + ++ E
Sbjct: 746 DAHPLAQRKNPIQIIKNHKQRLLLREQLIKTQDQHQNQIKKSRSSYYWREFIYLIQILLE 805
Query: 994 TRALDINTQV---------------------IFPLGETAAAIRGENELWLAMVLRNKILL 1032
+AL+ + + I PLGE AA IRGENELWLA+ L +
Sbjct: 806 FQALEEDLPINHPEEAVASIKREKEEDKCYRINPLGEAAALIRGENELWLAIALTSGAFE 865
Query: 1033 DLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGV 1092
L P +LA+ ++L++E + W + EPS V+ +I L E R ++Q K+
Sbjct: 866 RLTPHELASAVSALITEPPRPDTWVD----CEPSPLVLQLIIDLKESRRRLNQVQGKYKA 921
Query: 1093 EI----PCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPD 1148
++ P L+++ G+VE WA GL W E+ LD+GD+ RLLRRTID+L QIP++P+
Sbjct: 922 KLTKIPPVFLETELLGLVEQWALGLEWYELSDLTNLDEGDIVRLLRRTIDMLWQIPQIPE 981
Query: 1149 VDQRLQKNAVDASNVMDRPPI 1169
+ L+ NA A ++ R PI
Sbjct: 982 ISSNLRDNANKAIALLKRFPI 1002
>gi|67920852|ref|ZP_00514371.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Crocosphaera
watsonii WH 8501]
gi|67856969|gb|EAM52209.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Crocosphaera
watsonii WH 8501]
Length = 970
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 364/1111 (32%), Positives = 528/1111 (47%), Gaps = 251/1111 (22%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
++ F +D FQ+ +I A +G SVVV APT SGKT+I E A + +R+FYTTPLKAL
Sbjct: 15 LFPFELDPFQQEAIAALHQGESVVVCAPTGSGKTVIGEFAIYRALHLGQRVFYTTPLKAL 74
Query: 215 SNQKFREFRETFG-------DNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVS 266
SNQKFR+F++ F + VGL+TGD+ IN +A I++MTTEI RNMLY++ +G V
Sbjct: 75 SNQKFRDFQDKFATTEAGVVEGMVGLITGDTVINADASIVVMTTEIFRNMLYETPIGQVG 134
Query: 267 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326
+ L +V ++LDE HY+S+ RGTVWEE IIYC +Q++ LSAT+ N+++L WI Q
Sbjct: 135 T--SLENVATVILDECHYISNRGRGTVWEESIIYCSPSIQLVALSATIGNSEDLTKWINQ 192
Query: 327 IHGKT-------------ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYL 373
+ +LI S RPVPL +YFS K L PLL+++ +N +L
Sbjct: 193 VRKTAPNFDPDKTSISLCKLINSDFRPVPLRFYFSQKNGLYPLLNQQQTGLNNRLK---- 248
Query: 374 QLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTL 433
+ ++ ++RS+ P + +
Sbjct: 249 -------------------------------------PKGNRKKRRRVKRSECPTPMMVI 271
Query: 434 WHLRSRDMLPAIWFIFNRRGCDAAVQYL------------------------EDCNL--- 466
L +D+LPAI+ IF+RR CD AVQ L E+ NL
Sbjct: 272 QQLYEKDLLPAIYVIFSRRECDRAVQKLEGVVLVSPEEAHALQYNLLTFFLGENTNLQVS 331
Query: 467 --------------------------------LDECEMSEVELALKRFRIL--YPDAVRE 492
L E E S+V L F IL VR
Sbjct: 332 LLEAVATENPPLYEPLKDFLSTLSPQSNLFTYLGEDEESKVHL----FEILANLCQLVRS 387
Query: 493 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
++ L +G+AAHHAG LP+WK +E+LF+ GLVKVVFAT TL+AGINMPART V+S+LS
Sbjct: 388 EQLEPLTRGIAAHHAGILPLWKELVEQLFEVGLVKVVFATATLSAGINMPARTTVISALS 447
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
KR +G L +E Q+AGRAGRRG+D GHVV +QTP+EGA E L A EPL S
Sbjct: 448 KRIDTGHSMLNPSEFLQIAGRAGRRGMDEVGHVVTIQTPFEGATEAAYLATAESEPLKSC 507
Query: 613 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 672
FT SYGMVLNLL SL EA+ L+E+SF Y+ A+
Sbjct: 508 FTPSYGMVLNLL-------------------QKHSLREAKDLLERSFAEYL-------AQ 541
Query: 673 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 732
+L Q+ L++E++ I+ + AY++ L+ LK EKR L + +
Sbjct: 542 LKLEPEQQAIASLSTELAKLDIELGGLQEKDILAYEK---LKARLKEEKRLLKVLEAQAQ 598
Query: 733 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 792
KR + L G L VY L +LK SI
Sbjct: 599 EKRKKEIAGQLSKLNIGDL-------------------VY------LKGKRLKT--SIPQ 631
Query: 793 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA 852
+ + +G +D + LG +N WY I Y P ++ A
Sbjct: 632 LATIVAMVPGSGQGFD--------LLCLGDNNYWYLVKRGDIVDFYGASLP-LSFADNLT 682
Query: 853 LPRETMSLLLDKG-------EMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSES 905
LP + L L +G + ++++D FG + E V+
Sbjct: 683 LP-DLRRLSLGRGPKGDENSRQITQQMSDRAFGRITPPE-------------VIEQQQRI 728
Query: 906 DEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKAR 965
D V + + H ++ K++K++ + E ++L R
Sbjct: 729 DHVQTL-LDDHPLTQS---------------------KDFKRLFKSHHRRLELREQLHNR 766
Query: 966 SKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMV 1025
+ K ++ + W+EFL + ++ E +ALD T LGE AA +RGEN+LWL MV
Sbjct: 767 QIKFQK-LQSNQSYYWQEFLNLIEILREFKALDNYTPT--ALGEAAATMRGENQLWLGMV 823
Query: 1026 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN-------VLDE 1078
L + L L+ QLAA +++++E ++ W N Y PS V+++ + E
Sbjct: 824 LMSSTLEHLEAPQLAAAVSAIITETLRPDTWTN----YLPSPEVLSLFQESPEDGVSIGE 879
Query: 1079 HRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 1138
R + Q ++ V IP L+ + G+VE WA G W+E+ + +LD+GDL RLLRRT+D
Sbjct: 880 MRRLLNQTQRRYQVTIPVWLELELMGLVEQWALGGDWQELCENTSLDEGDLVRLLRRTVD 939
Query: 1139 LLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
+L QIP+ P + L A +A ++ R PI
Sbjct: 940 ILWQIPQTPGISGYLITTAKEAIALLKRFPI 970
>gi|416379953|ref|ZP_11684012.1| Helicase [Crocosphaera watsonii WH 0003]
gi|357265757|gb|EHJ14478.1| Helicase [Crocosphaera watsonii WH 0003]
Length = 970
Score = 488 bits (1255), Expect = e-134, Method: Compositional matrix adjust.
Identities = 362/1111 (32%), Positives = 529/1111 (47%), Gaps = 251/1111 (22%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
++ F +D FQ+ +I A +G SVVV APT SGKT+I E A + +R+FYTTPLKAL
Sbjct: 15 LFPFELDPFQQEAIAALHQGESVVVCAPTGSGKTVIGEFAIYRALHLGQRVFYTTPLKAL 74
Query: 215 SNQKFREFRETFG-------DNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVS 266
SNQKFR+F++ F + VGL+TGD+ IN +A I++MTTEI RNMLY++ +G V
Sbjct: 75 SNQKFRDFQDKFATTEAGVVEGMVGLITGDTVINADASIVVMTTEIFRNMLYETPIGQVG 134
Query: 267 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326
+ L +V ++LDE HY+S+ RGTVWEE IIYC +Q++ LSAT+ N ++L WI Q
Sbjct: 135 T--SLENVATVILDECHYISNRGRGTVWEESIIYCSPSIQLVALSATIGNPEDLTKWINQ 192
Query: 327 IHGKT-------------ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYL 373
+ +LI S RPVPL +YFS K L PLL+++ +N +L
Sbjct: 193 VRKTAPNFDPDKTSISLCKLINSDFRPVPLRFYFSQKNGLYPLLNQQQTALNNRLK---- 248
Query: 374 QLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTL 433
+ ++ ++RS+ P + +
Sbjct: 249 -------------------------------------PKGNRKKRRRVKRSECPTPMMVI 271
Query: 434 WHLRSRDMLPAIWFIFNRRGCDAAVQYL------------------------EDCNL--- 466
L +D+LPAI+ IF+RR CD AVQ L E+ NL
Sbjct: 272 QQLYEKDLLPAIYVIFSRRECDRAVQKLEGVVLVSPEEAHALQYNLLTFFLGENTNLQVS 331
Query: 467 --------------------------------LDECEMSEVELALKRFRIL--YPDAVRE 492
L E E S+V L F IL VR
Sbjct: 332 LLEAVATENPPLYEPLKDFLSTLSPQSNLFTYLGEDEESKVHL----FEILANLCQLVRS 387
Query: 493 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
++ L +G+AAHHAG LP+WK +E+LF+ GLVKVVFAT TL+AGINMPART V+S+LS
Sbjct: 388 EQLEPLTRGIAAHHAGILPLWKELVEQLFEVGLVKVVFATATLSAGINMPARTTVISALS 447
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
KR +G L +E Q+AGRAGRRG+D GHVV +QTP+EGA E L A EPL S
Sbjct: 448 KRIDTGHSMLNPSEFLQIAGRAGRRGMDEVGHVVTIQTPFEGATEAAYLATAESEPLKSC 507
Query: 613 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 672
FT SYGMVLNLL SL EA+ L+E+SF Y+ A+
Sbjct: 508 FTPSYGMVLNLL-------------------QKHSLREAKDLLERSFAEYL-------AQ 541
Query: 673 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 732
+L Q+ L++E++ I+ + AY++ L+ LK EKR L + +
Sbjct: 542 LKLEPEQQAIASLSTELAKLDIELGGLQEKDILAYEK---LKARLKEEKRLLKVLEAQAQ 598
Query: 733 LKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 792
KR + L G L +L + + S+P +A+I
Sbjct: 599 EKRKKEIAGQLSKLNIGDLVYL-----KGKRLRTSIP----------------QLATI-- 635
Query: 793 SFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA 852
+ +G +D + LG +N WY I Y P ++ A
Sbjct: 636 ----VAMVPGSGQGFD--------LLCLGDNNYWYLVKRGDIVDFYGASLP-LSFADNLT 682
Query: 853 LPRETMSLLLDKG-------EMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSES 905
LP + L L +G + ++++D FG + E V+
Sbjct: 683 LP-DLRRLSLGRGPKGDENSRQITQQMSDRAFGRITPPE-------------VIEQQQRI 728
Query: 906 DEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKAR 965
D V + + H ++ K++K++ + E ++L R
Sbjct: 729 DHVQTL-LDDHPLTQS---------------------KDFKRLFKSHHRRLELREQLHNR 766
Query: 966 SKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMV 1025
+ K ++ + W+EFL + ++ E +ALD T LGE AA +RGEN+LWL MV
Sbjct: 767 QIKFQK-LQSNQSYYWQEFLNLIEILREFKALDNYTPTA--LGEAAATMRGENQLWLGMV 823
Query: 1026 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN-------VLDE 1078
L + L L+ QLAA +++++E ++ W N Y PS V+++ + E
Sbjct: 824 LMSGTLEHLEAPQLAAAVSAIITETLRPDTWTN----YLPSPEVLSLFQESPEDGVSIGE 879
Query: 1079 HRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 1138
R + Q ++ V IP L+ + G+VE WA G W+E+ + +LD+GDL RLLRRT+D
Sbjct: 880 MRRLLNQTQRRYQVTIPVWLELELMGLVEQWALGGDWQELCENTSLDEGDLVRLLRRTVD 939
Query: 1139 LLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
+L QIP+ P + L A +A ++ R PI
Sbjct: 940 ILWQIPQTPGISGYLITTAKEAIALLKRFPI 970
>gi|172037250|ref|YP_001803751.1| DNA helicase [Cyanothece sp. ATCC 51142]
gi|354553865|ref|ZP_08973171.1| DSH domain protein [Cyanothece sp. ATCC 51472]
gi|171698704|gb|ACB51685.1| DNA helicase [Cyanothece sp. ATCC 51142]
gi|353554582|gb|EHC23972.1| DSH domain protein [Cyanothece sp. ATCC 51472]
Length = 970
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 373/1083 (34%), Positives = 531/1083 (49%), Gaps = 189/1083 (17%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
+ +++ F++D FQ +I A +G SVVV APT SGKT+I E A + +R+FYTTPL
Sbjct: 12 IQNLFPFQLDSFQEEAIAALNQGKSVVVCAPTGSGKTVIGEFATYRALHLGQRVFYTTPL 71
Query: 212 KALSNQKFREFRETFG-------DNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VG 263
KALSNQKFR+F+E F ++ VGL+TGD IN A I+IMTTEI RNMLY++ +G
Sbjct: 72 KALSNQKFRDFQEKFATTEAGIQEDKVGLITGDMVINPNADIVIMTTEIFRNMLYETPIG 131
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
V + L +V ++LDE HY+SD RGTVWEE IIYCP +Q++ LSAT+ N +EL W
Sbjct: 132 QVGT--SLENVATVILDECHYISDRGRGTVWEESIIYCPPTIQLVALSATIGNPEELTDW 189
Query: 324 IGQIHGKT-------------ELITSSRRPVPLTWYFSTKTALLPLLDE----------- 359
I Q+ ELI S RPVPL +YFS K L PLL+
Sbjct: 190 INQVRKTAPNVDPEQTTVSLCELINSDFRPVPLRFYFSQKNGLYPLLNRKQTALNPRLKP 249
Query: 360 KGKHMNRKL---SLNYLQLSTSEVKPYKDG-------GSRRRNSRKHADMNSNNIVTSFG 409
KG RK S + E +KD SRR R + +V+
Sbjct: 250 KGNRQKRKRIKRSECPTPMMVVEQLDHKDLLPAIYVIFSRRECDRAVQKLEGVVLVSPEE 309
Query: 410 QHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDE 469
H L N + + P + ++L S + P D +L NL +
Sbjct: 310 AHALQYNLLTFFL-GENPNLQESLLKAVSTENPPLY---------DPLKDFL--SNLSPQ 357
Query: 470 CEM-----SEVELALKRFRIL--YPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQ 522
E+ ++ + + F+IL VR ++ L +G+AAHHAG LP+WK +E+LF+
Sbjct: 358 SELFPYLAADEDSKIHLFQILADLCQLVRGEQLEPLTRGIAAHHAGILPLWKELVEQLFE 417
Query: 523 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 582
GLVKVVFAT TL+AGINMPART V+S+LSKRT +G LT +E Q+AGRAGRRG+D
Sbjct: 418 VGLVKVVFATATLSAGINMPARTTVISALSKRTDTGHSMLTPSEFLQIAGRAGRRGMDEV 477
Query: 583 GHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKAL 642
G+VV +QTP+EGA E L A EPL S FT SYGMVLNLL
Sbjct: 478 GYVVTIQTPFEGATEAAYLATAESEPLRSCFTPSYGMVLNLL------------------ 519
Query: 643 QAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLL 702
+++EA+ L+E+SF Y+ A+ +L Q+ L++E++ I+ L
Sbjct: 520 -QKHTIQEAKDLLERSFAEYL-------AQLKLEPEQQAIADLSTELAKLDIELGG---L 568
Query: 703 SEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSE 762
E E L LK EKR L + E KR + L G L
Sbjct: 569 QEKDILEYEKLNARLKEEKRLIKILEDQAEEKRKKEISGQLGRLNIGDL----------- 617
Query: 763 GVEHSVPAVYL-GKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALG 821
VYL GK S +L + + + +G +D + LG
Sbjct: 618 --------VYLKGKRLRTASPQLAVIVA---------MVPGSGQSFD--------LLCLG 652
Query: 822 SDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPR-ETMSLLLDKG-------EMLWEKLA 873
+N WY I Y P L+ D LPR + L L +G + + ++++
Sbjct: 653 DNNYWYLVKRGDIVDFYGASLP---LSLIDNLPRPDQRRLSLGRGPKGDETSKTITQQIS 709
Query: 874 DSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLK 933
D FG + +P + VE K + V L
Sbjct: 710 DRAFGRI---------------IP------------------PEVVEQQK-RIDHVQGLL 735
Query: 934 KKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHE 993
T+G +E+K+++ + E ++L R + K ++ + W+EFL + +++ E
Sbjct: 736 NNHPLTKG-REFKRLLKSHHQRLELREQLHNRQIKFQK-LQSNQSYYWQEFLNLIDILRE 793
Query: 994 TRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKV 1053
ALD T LG+ AA +RGENELWL +V + IL L+P QLAA +++++E ++
Sbjct: 794 FDALDDYTPT--KLGKAAATMRGENELWLGLVFMSGILNPLEPHQLAAAVSAIITETLRP 851
Query: 1054 RLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL-------QEKHGVEIPCCLDSQFSGMV 1106
W N Y PS V+ + E S E+ Q ++ + IP L+ + G+V
Sbjct: 852 DTWTN----YLPSPEVLRLFRESPEQGVSIGEMRRLLNQTQRRYQITIPVWLELELIGLV 907
Query: 1107 EAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
E WA G W+E+ + +LD+GDL RLLRRTIDLL QIP+ P + L A +A ++ R
Sbjct: 908 EQWALGGDWQELCENTSLDEGDLVRLLRRTIDLLWQIPQTPGISNYLAATAKEAIVLLKR 967
Query: 1167 PPI 1169
PI
Sbjct: 968 FPI 970
>gi|428221054|ref|YP_007105224.1| superfamily II RNA helicase [Synechococcus sp. PCC 7502]
gi|427994394|gb|AFY73089.1| superfamily II RNA helicase [Synechococcus sp. PCC 7502]
Length = 877
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 257/550 (46%), Positives = 347/550 (63%), Gaps = 63/550 (11%)
Query: 147 IDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIF 206
+D+D+L + F +D+FQ +I A S+VV APT SGKTLI E A + +QRR+F
Sbjct: 4 LDLDKL---FPFDLDQFQHEAIAALNARKSIVVCAPTGSGKTLIGEYAIYKALNDQRRVF 60
Query: 207 YTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMV 265
YTTPLKALSNQK R+FR+ FG+ NVGLLTGD+++NR+A IL+MTTEI RNMLY + +G V
Sbjct: 61 YTTPLKALSNQKLRDFRDRFGNENVGLLTGDTSVNRDAPILVMTTEIFRNMLYGTPIGEV 120
Query: 266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325
+ L V+V+VLDE HY++D +RGTVWEE IIYCP ++Q++ LSATVAN+ +L WI
Sbjct: 121 G--TSLTGVEVVVLDECHYMNDRARGTVWEESIIYCPPDIQLVALSATVANSAQLTDWIS 178
Query: 326 QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
++HG TELI S RPVPL ++F+ L PLLD GK +N +L
Sbjct: 179 KVHGVTELIYSDYRPVPLQFHFANPKGLFPLLDNSGKKINPRL----------------- 221
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
R N R L K++ R + P + + L+ RDMLPAI
Sbjct: 222 ----RGNPRN-----------------LKKDANGKPPRYESPSLPFVISQLQQRDMLPAI 260
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 505
FIF+R+GCD A+ L+ +L++E E +++ + F P+ R I L +G+A+H
Sbjct: 261 HFIFSRKGCDQAIGQLDKMSLVNESEAYQLKTQIDAFLEANPEVGRSQYISSLYRGIASH 320
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP WK +EELFQ+GL+KVVFATETLAAGINMPART V+SSLSKRT G LT++
Sbjct: 321 HAGILPAWKGLVEELFQQGLIKVVFATETLAAGINMPARTTVISSLSKRTDRGHRLLTAS 380
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E QMAGRAGRRG+D G+VV VQ+PYEGA++ L A +PLVSQFT SYGMVLNLL
Sbjct: 381 EFLQMAGRAGRRGMDAVGYVVTVQSPYEGAKDAAYLATAQADPLVSQFTPSYGMVLNLL- 439
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 685
S++E R+LVE+SFG Y+ M ++ + ++ E ++L
Sbjct: 440 ------------------QTHSIDEVRELVERSFGQYLAGLAMEPQQESIQELADEVELL 481
Query: 686 TSEISDDAID 695
++++ +D
Sbjct: 482 ETQLASIDLD 491
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 125/217 (57%), Gaps = 10/217 (4%)
Query: 958 KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL--GETAAAIR 1015
K+++LK + + + Q + W+EF + ++ L Q + P G+ AA++R
Sbjct: 668 KLEQLKEKLEYQRGVLSQKQQHHWQEFSSLVTILQSFGCL----QGVEPTAAGQVAASLR 723
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 1075
G+NELWLA+ + L +L P LA CA+LV+E + ++ + S V ++
Sbjct: 724 GDNELWLALAFLSGELDNLDPHHLATACAALVTENSR----PDSRVNFTISPLVEESLSG 779
Query: 1076 LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRR 1135
L R ++Q++H V IP L+ G++E WA G++W E+ + +LD+GD+ R+ RR
Sbjct: 780 LRGLRRQLFQIQKRHNVAIPIWLEYDLVGLIEQWALGMSWTELCANTSLDEGDIVRIARR 839
Query: 1136 TIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 1172
T+DLL+QIP +P + + +++NA A ++DR P++E+
Sbjct: 840 TLDLLSQIPHIPHLPETIRQNAYRAMQLIDRFPVNEV 876
>gi|81300133|ref|YP_400341.1| DEAD/DEAH box helicase-like protein [Synechococcus elongatus PCC
7942]
gi|81169014|gb|ABB57354.1| DEAD/DEAH box helicase-like [Synechococcus elongatus PCC 7942]
Length = 919
Score = 484 bits (1245), Expect = e-133, Method: Compositional matrix adjust.
Identities = 265/583 (45%), Positives = 351/583 (60%), Gaps = 69/583 (11%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
++A+++ F +D FQ+ +I A +G SVVV APT SGKTLI E A +A +R+FYTTP
Sbjct: 30 DVATLFPFELDDFQKEAIAALDQGRSVVVCAPTGSGKTLIGEYAIYRALARGKRVFYTTP 89
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+FRE FG + VGLLTGD++I R+A I++MTTEI RNMLY + +G V +
Sbjct: 90 LKALSNQKLRDFREQFGSDRVGLLTGDTSIARDAPIVVMTTEIFRNMLYGTRIGEVGTS- 148
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
+ DV+ +VLDE HY++D RGTVWEE IIYCP VQ++ LSATVAN +L WI Q+HG
Sbjct: 149 -MIDVETVVLDECHYMNDQQRGTVWEESIIYCPPTVQLVALSATVANGGQLTDWIDQVHG 207
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
T+LI S RP+PL + F L PLLDE GK ++ + R
Sbjct: 208 PTDLIYSDYRPIPLAFSFCGNNGLFPLLDETGKSIHPSFKV------------------R 249
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R+ D I ++P + + L+ R MLPAI+FIF
Sbjct: 250 RKTKGAKHDRKGREI-------------------PEIPSLGFVVGQLQQRQMLPAIYFIF 290
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD AV+ L +L++ E + ++ + F P+A R ++ LL+G+A+HHAG
Sbjct: 291 SRRGCDKAVRDLGPISLVNADEAARLKQRVNAFLAQSPEAARSGHVEPLLRGIASHHAGV 350
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK IEELFQ GLVKVVFATETLAAGINMPART V++SLSKRT SG L +E Q
Sbjct: 351 LPAWKGLIEELFQEGLVKVVFATETLAAGINMPARTTVIASLSKRTDSGHRLLLPSEFLQ 410
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
M+GRAGRRG+D++G+VV VQ+ +EG++E L G +PLVSQFT SYGMVLNLL
Sbjct: 411 MSGRAGRRGLDDQGYVVTVQSRFEGSQEAAHLATVGPDPLVSQFTPSYGMVLNLL----- 465
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
SLEEA++LVE+SFG Y+ S + ++++ I E D L +E+
Sbjct: 466 --------------QKHSLEEAKELVERSFGRYLASLSLKPEQEKIAAIAAERDRLQAEL 511
Query: 690 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 732
+D + A E L LK EKR L + E
Sbjct: 512 AD----------VDFATLAEYDKLYGRLKEEKRLLKILHEQAE 544
Score = 113 bits (282), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 18/224 (8%)
Query: 960 KRLKARSKRLTK----------RIEQIEPSGWKEFLRISNVIHETRAL-DINTQVIFPLG 1008
KRL R ++L R+E++ W+EFL + +++ L D+ +G
Sbjct: 699 KRLHKRQQQLQALEDEIGDRRARLEKLGQRHWQEFLSLMSILENFSCLEDLKPT---EMG 755
Query: 1009 ETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT 1068
+ AA+RG+NELWL +VL + L L PA+ AA +LV+E + LW ++
Sbjct: 756 QNVAALRGDNELWLGLVLMSGELDGLTPAEFAAASEALVTEVSRPDLWTR----FDVPPA 811
Query: 1069 VINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 1128
V + + + R + Q + V P L+ +G+V+AWA G+ W E+ +LD+GD
Sbjct: 812 VEDALMGVRGLRRQLQQQQSRRNVFTPIWLELDLTGLVKAWAEGMEWNELCAATSLDEGD 871
Query: 1129 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 1172
+ R+LRRTID LAQIP +P + ++ A A +++R P+ ++
Sbjct: 872 IVRVLRRTIDFLAQIPHMPYLQGGVKNTASTALGLINRFPVKDM 915
>gi|56750238|ref|YP_170939.1| helicase [Synechococcus elongatus PCC 6301]
gi|56685197|dbj|BAD78419.1| putative helicase [Synechococcus elongatus PCC 6301]
Length = 919
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 264/583 (45%), Positives = 351/583 (60%), Gaps = 69/583 (11%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
++A+++ F +D FQ+ +I A +G SVVV APT SGKTLI E A +A +R+FYTTP
Sbjct: 30 DVATLFPFELDDFQKEAIAALDQGRSVVVCAPTGSGKTLIGEYAIYRALARGKRVFYTTP 89
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+FRE FG + VGLLTGD++I R+A I++MTTEI RNMLY + +G V +
Sbjct: 90 LKALSNQKLRDFREQFGSDRVGLLTGDTSIARDAPIVVMTTEIFRNMLYGTRIGEVGTS- 148
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
+ DV+ +VLDE HY++D RGTVWEE IIYCP VQ++ LSATVAN +L WI Q+HG
Sbjct: 149 -MIDVETVVLDECHYMNDQQRGTVWEESIIYCPPTVQLVALSATVANGGQLTDWIDQVHG 207
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
T+LI S RP+PL + F L PLLDE GK ++ + R
Sbjct: 208 PTDLIYSDYRPIPLAFSFCGNNGLFPLLDETGKSIHPSFKV------------------R 249
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R+ D I ++P + + L+ R MLPAI+FIF
Sbjct: 250 RKTKGAKHDRKGREI-------------------PEIPSLGFVVGQLQQRQMLPAIYFIF 290
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
+RRGCD AV+ L +L++ E + ++ + F P+A R ++ LL+G+A+HHAG
Sbjct: 291 SRRGCDKAVRDLGPISLVNADEAARLKQRVNAFLAQSPEAARSGHVEPLLRGIASHHAGV 350
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK IEELFQ GLVKVVFATETLAAGINMPART V++SLSKRT SG L +E Q
Sbjct: 351 LPAWKGLIEELFQEGLVKVVFATETLAAGINMPARTTVIASLSKRTDSGHRLLLPSEFLQ 410
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
M+GRAGRRG+D++G+VV VQ+ +EG++E L G +PLVSQFT SYGMVLNLL
Sbjct: 411 MSGRAGRRGLDDQGYVVTVQSRFEGSQEAAHLATVGPDPLVSQFTPSYGMVLNLL----- 465
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
SLEEA++LVE+SFG Y+ + + ++++ I E D L +E+
Sbjct: 466 --------------QKHSLEEAKELVERSFGRYLATLSLKPEQEKIAAIAAERDRLQAEL 511
Query: 690 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 732
+D + A E L LK EKR L + E
Sbjct: 512 AD----------VDFATLAEYDKLYGRLKEEKRLLKILHEQAE 544
Score = 113 bits (282), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 18/224 (8%)
Query: 960 KRLKARSKRLTK----------RIEQIEPSGWKEFLRISNVIHETRAL-DINTQVIFPLG 1008
KRL R ++L R+E++ W+EFL + +++ L D+ +G
Sbjct: 699 KRLHKRQQQLQALEDEIGDRRARLEKLGQRHWQEFLSLMSILENFSCLEDLKPT---EMG 755
Query: 1009 ETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT 1068
+ AA+RG+NELWL +VL + L L PA+ AA +LV+E + LW ++
Sbjct: 756 QNVAALRGDNELWLGLVLMSGELDGLTPAEFAAASEALVTEVSRPDLWTR----FDVPPA 811
Query: 1069 VINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 1128
V + + + R + Q + V P L+ +G+V+AWA G+ W E+ +LD+GD
Sbjct: 812 VEDALMGVRGLRRQLQQQQSRRNVFTPIWLELDLTGLVKAWAEGMEWNELCAATSLDEGD 871
Query: 1129 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 1172
+ R+LRRTID LAQIP +P + ++ A A +++R P+ ++
Sbjct: 872 IVRVLRRTIDFLAQIPHMPYLQGGVKNTASTALGLINRFPVKDM 915
>gi|86607265|ref|YP_476028.1| DEAD/DEAH box helicase [Synechococcus sp. JA-3-3Ab]
gi|86555807|gb|ABD00765.1| ATP-dependent helicase, DEAD/DEAH box family [Synechococcus sp.
JA-3-3Ab]
Length = 803
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 266/574 (46%), Positives = 348/574 (60%), Gaps = 88/574 (15%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+DEL ++ F +D+FQ +I+A G SVVV APT SGKTLI E A ++ +R+FYT
Sbjct: 12 LDELRRLFPFELDEFQIRAIQALAAGESVVVCAPTGSGKTLIGEYAIYRALSQGKRVFYT 71
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TPLKALSNQKFR+F + FG VGLLTGD +INREA IL+MTTEI RNMLY + ++ +
Sbjct: 72 TPLKALSNQKFRDFGQQFGPERVGLLTGDISINREAPILVMTTEIFRNMLYGTPLSLAVQ 131
Query: 269 SGLF-------------------DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIIC 309
G + DV ++LDE HY++D RGTVWEE IIYCP +Q++
Sbjct: 132 QGAYASEMDAWEQAEALSRDPLQDVQAVILDECHYMNDQQRGTVWEEAIIYCPAHIQLVA 191
Query: 310 LSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD--EKGKHM-NR 366
LSAT+AN+D+L W+ Q+HG T LI SS RPVPL ++F+ + L PLL+ E G+ + NR
Sbjct: 192 LSATLANSDQLTDWMNQVHGPTRLIDSSHRPVPLQFHFANRKGLFPLLEQTESGQWVCNR 251
Query: 367 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 426
+L + K K G S S+G V
Sbjct: 252 RL----------KSKLPKSGQS------------------SYGG---------------V 268
Query: 427 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL-DECEMSEVELALKRFRIL 485
P ++ + +LR RDMLPAI+FIF+R+GCD AV + + +L+ E E ++ + RF
Sbjct: 269 PDMVQVVENLRQRDMLPAIYFIFSRKGCDLAVASVGNLDLIASEAERQQLAEQIDRFCRE 328
Query: 486 YPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
P+AVR + L +G+AAHHAG LP WK +E LFQ+GLVK+VFATETLAAGINMPART
Sbjct: 329 TPEAVRRDQLDALYRGIAAHHAGMLPAWKGLVEHLFQQGLVKLVFATETLAAGINMPART 388
Query: 546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 605
V+SSLSKRT +G LT++E QM+GRAGRRG D GHVV +Q+P+EGA+E +L AG
Sbjct: 389 TVISSLSKRTDNGHRLLTASEFMQMSGRAGRRGKDVIGHVVTLQSPFEGAQEAARLATAG 448
Query: 606 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665
+PLVSQFT +YGMVLNLL SLE AR L+ +SFG Y+ S
Sbjct: 449 ADPLVSQFTPTYGMVLNLL-------------------QKHSLEAARDLINRSFGQYLLS 489
Query: 666 NVMLAAKDELCKIQ---KETDVLTSEISDDAIDR 696
L + EL + +E D L ISD+ I R
Sbjct: 490 LQKLPEQQELQHTRAELEEIDRLLEGISDEDIAR 523
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 133/256 (51%), Gaps = 11/256 (4%)
Query: 918 AVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIE 977
A + + Q K+ L+ +I + KK++ +EK +RL+ R + L ++ + ++
Sbjct: 557 AFPHIQAQEEKIRALEARIRANPAHRVGKKLLGL----QEKRQRLRKRLQHLERQSDSVQ 612
Query: 978 PSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPA 1037
W++F+ + V+ E L GE AA+RG+NELWLA+ L + L P
Sbjct: 613 ELRWQQFMALVGVLQEFDCLREYQPTAS--GEVVAALRGDNELWLALALLSGECLGCAPH 670
Query: 1038 QLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGV-EIPC 1096
A V A+LV+E + S S V +V++ L R Q +H V +P
Sbjct: 671 HFAGVIAALVAEPPR----SGTYSRLRTSGLVEDVLHGLRGLRRQLFRSQRQHQVFHVPI 726
Query: 1097 CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKN 1156
+ +G+VE WA G+ W ++ LD GD+ RL+RRT+DLL+QIP +P + L++N
Sbjct: 727 GFEPGLAGIVEHWAQGIPWEQLEASTNLDAGDIVRLIRRTLDLLSQIPYIPHLPAELREN 786
Query: 1157 AVDASNVMDRPPISEL 1172
A A ++DR P+SEL
Sbjct: 787 ARKAQKLLDRFPVSEL 802
>gi|428175293|gb|EKX44184.1| hypothetical protein GUITHDRAFT_109969 [Guillardia theta CCMP2712]
Length = 1170
Score = 474 bits (1219), Expect = e-130, Method: Compositional matrix adjust.
Identities = 368/1119 (32%), Positives = 547/1119 (48%), Gaps = 173/1119 (15%)
Query: 110 EFEVSSDSSPAPSWR---EEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRS 166
E E SS P W + V+ L ++ ++ G I +ELAS + F +D+FQ
Sbjct: 16 EAEASSMEEPGAPWNIASLSGTPEVVDALRSKFRQTGQ--ITTEELASCFPFPVDEFQMD 73
Query: 167 SIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETF 226
+I A + SV+VSAPT SGKT+ EAA A +++ YTTPLKALSNQKF +F + F
Sbjct: 74 AIRALIEKRSVIVSAPTGSGKTVCGEAAVYLGSAMGKKVLYTTPLKALSNQKFSDFCKQF 133
Query: 227 GDNNVGLLTGDSAINRE-AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285
G VGLLTGD ++NR+ A IL++TTE+ RNMLY S V+SE V ++LDE HY+
Sbjct: 134 GKERVGLLTGDVSVNRDNATILVLTTEVYRNMLYDSQDTVASE-----VHSVILDEFHYM 188
Query: 286 SDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTW 345
+D SRGTVWEE +I+ P E+ ++ LSAT+ N ++ W +HG T+LITS RPVPL +
Sbjct: 189 NDESRGTVWEESVIHSPPEILLVALSATMKNVKDIRDWFAHVHGPTDLITSDFRPVPLQF 248
Query: 346 YFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYK-DGGSRR------RNSRKHA 397
F + +L L D E K +L+ L + + P K GGS + +NSR+
Sbjct: 249 KFIDRKGILNLFDNENNKKGQPRLNRLLLPSAAAAQDPRKKSGGSSKFDGWNGKNSRRSY 308
Query: 398 DMNSNNI----------VTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+ ++ S +++P + L+ R+MLPAI F
Sbjct: 309 ESGPRRRREGGGGGGEEFSTPSGEGSSGRKRGGGSYAEIPSYGFAVRQLQKREMLPAIIF 368
Query: 448 IFNRRGCDAAVQYLEDCN-----LLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGV 502
IF+R A ++ D N LL L L+ F + + +E I+ L+G+
Sbjct: 369 IFSR-----AQRFANDSNWKVFELLAVIGSVTCSLLLQ-FVSQHKEVAQEDRIRLALRGI 422
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
A+HHAG +P+WK+ +EELFQ GL+KVVFATETLAAGINMPART V+SSLSKRT+ G L
Sbjct: 423 ASHHAGLVPLWKALVEELFQDGLIKVVFATETLAAGINMPARTTVISSLSKRTSDGVTSL 482
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
TSNEL QM GRAGRRG D GH V++++ +EGA E L+ +PL S+F+ YGMVLN
Sbjct: 483 TSNELRQMCGRAGRRGKDTVGHSVIMRSKWEGAPEAFTLVMKDADPLRSKFSPKYGMVLN 542
Query: 623 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS----NVMLAAKDELCKI 678
LL R ++E +K+VE+SFG+++ S A+D ++
Sbjct: 543 LL-------------------QDRPIQECKKIVERSFGSFLASIKRRGKSDGAEDVEMEV 583
Query: 679 QKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSA 738
Q D+L + + E+ + A L + LK E+R L ++ + + S
Sbjct: 584 QAAQDLLAT--------------VEESELQNFAKLTQRLKTEQRVLRILLQQAQERMNSV 629
Query: 739 LKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNR 798
+D L G P L KD+ D+ S + + ++
Sbjct: 630 FEDTLPYCSPGT-PLLLTPRKDAT--------------DNRPESAVLLGLLSDQLLDIS- 673
Query: 799 LAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETM 858
P+Y+V L S N + T K I V P + + A R +
Sbjct: 674 --------------TPNYFVCLTSTNDYRVVTPKDIVDVDLESEPVSMVDEQGA--RVDV 717
Query: 859 SLLLDK-----------GEMLWEKLADSEFGGLWC-----MEGSLETWSWSLNVPVLSSL 902
+ L+ K G+ L +A E + + SL T S+ L++PV+
Sbjct: 718 NELIAKISSRSAIKRASGDYLM--VAPRELAAIAARFLDRLLLSLPTHSF-LSIPVVEEP 774
Query: 903 SESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRL 962
EVL D V N+ E L + R E + YK I D + RL
Sbjct: 775 KTPPEVLAQ----QDRV-NHVEALLTSHPLFAREDRKELLRAYKFISDQI-----ATGRL 824
Query: 963 KARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWL 1022
+ ++ +T+ + LR + E D+ G+ A++ +N LW+
Sbjct: 825 RQKATEVTRH----------DLLRDFGFLVENNVTDV--------GKLVASLNADNSLWV 866
Query: 1023 AMV-LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIY---EPSTTVINVINVLDE 1078
V L N IL +L P +LAA + +VS+ N IY + S V + + +
Sbjct: 867 GSVLLYNDILYELGPHELAAALSCVVSD-------LNRPDIYIAFDASPKVQDFVEQASD 919
Query: 1079 HRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 1138
+S + Q +G+ LD F+G+VEAWA G +W ++ ++ +GD+ R+LRR +D
Sbjct: 920 MQSRVIASQLANGLTFEVPLDPSFAGLVEAWALGTSWNSLLAMTSMQEGDVIRVLRRVLD 979
Query: 1139 LLAQIPKLP------DVDQRLQKNAVDASNVMDRPPISE 1171
+L QIP+LP V ++ NA A +MDR P+S+
Sbjct: 980 ILRQIPRLPYVPGERGVGAEIRLNARRALTLMDRFPVSD 1018
>gi|427711200|ref|YP_007059824.1| superfamily II RNA helicase [Synechococcus sp. PCC 6312]
gi|427375329|gb|AFY59281.1| superfamily II RNA helicase [Synechococcus sp. PCC 6312]
Length = 896
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 262/585 (44%), Positives = 339/585 (57%), Gaps = 74/585 (12%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
++E +++ F +D FQ +IEA + SVVV APT SGKTL+ E +A QRR+FYT
Sbjct: 8 LEEFTALFPFPLDNFQLQAIEALNQNCSVVVCAPTGSGKTLVGEYVIHRALARQRRVFYT 67
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSS 267
TPLKALSNQK R+FRE FG VGLLTGD +INR+A IL+MTTEI RNMLY + +G V
Sbjct: 68 TPLKALSNQKLRDFREQFGHEQVGLLTGDVSINRDAPILVMTTEIFRNMLYGTPIGEVG- 126
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
+ L V+ +VLDE HY++D RGTVWEE IIYCP E+Q++ LSAT+AN ++L WI +
Sbjct: 127 -TSLAGVESVVLDECHYMNDRQRGTVWEESIIYCPAEIQLVALSATIANGEQLTDWITAV 185
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
HG+T LI S RPVPL +YF L PLL+ + H+N +L +
Sbjct: 186 HGETRLIYSDWRPVPLQFYFCQGKGLFPLLNSEKTHLNARL--------------LRSNP 231
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
R ++ +N +V Q R MLPAI+F
Sbjct: 232 PPGRGRKRPEFLNLAYVVNQLAQ----------------------------RQMLPAIYF 263
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 507
IF+RRGCD A+Q + NLL+ E + L F V I L +G+AAHHA
Sbjct: 264 IFSRRGCDQALQQMGGVNLLNPEESQALNQILDEFLTRNGAVVPTAHIAPLRQGIAAHHA 323
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
G LP+WK+ IEELFQ GL+KVVFATETLAAGINMPART VLSSLSKRT SG LT++E
Sbjct: 324 GVLPLWKTLIEELFQEGLIKVVFATETLAAGINMPARTTVLSSLSKRTDSGHRLLTASEF 383
Query: 568 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 627
Q++GRAGRRG+D GHVV +QTP+EGA E L G +PLVSQFT SYGMVLNLL
Sbjct: 384 LQISGRAGRRGMDEIGHVVTLQTPFEGAREAAYLATVGPDPLVSQFTPSYGMVLNLL--- 440
Query: 628 KVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTS 687
+LEEAR L+E+SFG Y+ + + + + ++ E + +
Sbjct: 441 ----------------QRHTLEEARDLIERSFGQYLATLHLAPQRQAITTLEVELEEINQ 484
Query: 688 EISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 732
+ D A + A L+E L+ E+R L + E
Sbjct: 485 RL-DPA---------NPQALSRYQKLRERLRQEQRLLKTLSHQAE 519
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 114/205 (55%), Gaps = 7/205 (3%)
Query: 968 RLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLR 1027
R K +Q P W++FL + ++ E L+ V PLG+ AA++RGENELWLA+
Sbjct: 682 RQEKLSQQAHPH-WEDFLSLIAILQEFGGLE--DLVATPLGQLAASLRGENELWLALAFD 738
Query: 1028 NKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQ 1087
+ L +L P QLAA CA+LV+E + W + Y S V ++ L R + Q
Sbjct: 739 SGALDELPPQQLAAACAALVTETPRPDSWTD----YALSAPVEEALSSLRPLRRQLFQAQ 794
Query: 1088 EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLP 1147
+ V P L++ G+VE WA G+ W + LD GDL RLLRRT+D+L+QIP P
Sbjct: 795 RRKRVIFPIWLETGLVGLVEHWALGIDWSALCQATNLDQGDLVRLLRRTLDVLSQIPHAP 854
Query: 1148 DVDQRLQKNAVDASNVMDRPPISEL 1172
L+K+A A ++DR P+++L
Sbjct: 855 HASPTLKKSATQARQLLDRFPVNDL 879
>gi|434387310|ref|YP_007097921.1| superfamily II RNA helicase [Chamaesiphon minutus PCC 6605]
gi|428018300|gb|AFY94394.1| superfamily II RNA helicase [Chamaesiphon minutus PCC 6605]
Length = 888
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 282/697 (40%), Positives = 382/697 (54%), Gaps = 117/697 (16%)
Query: 147 IDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIF 206
I ++L I+ F +D+FQ +++A G SVVV APT SGKTLI E A + RR+F
Sbjct: 6 ITTEQLKDIFPFPLDRFQLQAVDALNAGKSVVVCAPTGSGKTLIGEYAIHRALRQGRRVF 65
Query: 207 YTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMV 265
YTTPLKALSNQK+R+FR FG+ NVGLLTGD +I+R+A I++MTTEI RNMLY + +G V
Sbjct: 66 YTTPLKALSNQKYRDFRAEFGEGNVGLLTGDISIDRDAPIVVMTTEIFRNMLYGTRIGEV 125
Query: 266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325
+ + V+ +VLDE HY++D RGTVWEE IIYCP +Q++ LSATVAN+ +L WIG
Sbjct: 126 GTS--MVGVEAVVLDECHYMNDKQRGTVWEESIIYCPPHIQLVALSATVANSKQLTEWIG 183
Query: 326 QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
+HG TELI S RPVPL ++F +LPLLD +N KL +
Sbjct: 184 AVHGSTELIYSDFRPVPLEFHFVNPKGILPLLDPNTAKLNPKLKTH-------------- 229
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
R SRK D+ S V S L R+MLPAI
Sbjct: 230 ---RPTGSRKAEDVPSIGFVVS---------------------------KLAEREMLPAI 259
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 505
+FIF+RRGCD AV + L+ E + +++ + F P+A R ++ L KGVAAH
Sbjct: 260 YFIFSRRGCDKAVAEMATMQLVTPAESALLKIRIDDFLDKNPEAARAGQVEPLYKGVAAH 319
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP WKS +EELF GL+KVVFATETLAAGINMPART V+SSLSKRT G LT++
Sbjct: 320 HAGILPAWKSLVEELFGMGLIKVVFATETLAAGINMPARTTVISSLSKRTDQGHRLLTAS 379
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E QMAGRAGRRG D G+VV QT +EGA+E + +PLVSQFT +YGMVLNLL
Sbjct: 380 EFLQMAGRAGRRGKDVVGYVVATQTRFEGAKEASDFATSAPDPLVSQFTPTYGMVLNLL- 438
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 685
+LEEAR+LVE+SFG++ + +L + + I+KE L
Sbjct: 439 ------------------QTHTLEEARELVERSFGHFTKTLHLLPQQQSIGDIKKELSTL 480
Query: 686 TSEISDDAIDRKSRRLLS--EAAYKEMANLQEELKAEKRFRTELRRRMELKRF-SALKDI 742
+++++ +L+ E A+ ++ Q +LK + + +++ K+ +A
Sbjct: 481 -----QESLNKIDPNVLADYETAHSQLKLDQNQLKNLQLYTEQVQAGQVSKQLPAAFPGT 535
Query: 743 LKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQS 802
+ + H+P V +PAV + K
Sbjct: 536 ILSLKGKHVP-----------VATPLPAVLVTKI-------------------------- 558
Query: 803 NGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYR 839
G Y KP+ V LG DN WY + + V++
Sbjct: 559 AGSGY-----KPA-LVCLGQDNRWYVVNHQDVVAVHK 589
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 115/193 (59%), Gaps = 10/193 (5%)
Query: 981 WKEFLRISNVIHETRALDINTQVIFP--LGETAAAIRGENELWLAMVLRNKILLDLKPAQ 1038
W+EFL + V+ + L Q + P +GE AAAIRG+NELW+A+ L + L L P
Sbjct: 701 WQEFLNLIEVLRQVNGL----QGVLPTRIGEAAAAIRGDNELWIALALMSGYLDTLDPHH 756
Query: 1039 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 1098
LAAV +LVSE + W N Y+P+ V+ ++ L R ++Q ++ V +P +
Sbjct: 757 LAAVICALVSETPRSDSWTN----YDPADEVVMTLSALRGSRRQLFQIQRRYQVALPVWM 812
Query: 1099 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 1158
+ + G+VE WA ++W E+ + LD+GD+ R+LRRT+DLL+QIP +P LQ NA
Sbjct: 813 EYELVGIVENWALEVSWTELCSNTNLDEGDIVRMLRRTVDLLSQIPYVPHASDALQANAR 872
Query: 1159 DASNVMDRPPISE 1171
A ++DR PI+E
Sbjct: 873 RAIQLIDRFPINE 885
>gi|428213983|ref|YP_007087127.1| superfamily II RNA helicase [Oscillatoria acuminata PCC 6304]
gi|428002364|gb|AFY83207.1| superfamily II RNA helicase [Oscillatoria acuminata PCC 6304]
Length = 900
Score = 471 bits (1212), Expect = e-129, Method: Compositional matrix adjust.
Identities = 256/535 (47%), Positives = 328/535 (61%), Gaps = 69/535 (12%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
+++ F +D+FQ +I A G SVVV APT SGKTLI E + R+FYTTPLKA
Sbjct: 14 NLFPFALDRFQHEAIAALEAGRSVVVCAPTGSGKTLIGEYTIHRALKRGGRVFYTTPLKA 73
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLY-QSVGMVSSESGLF 272
LSNQK R+FR+ FG+ NVGLLTGD +INR+A +L+MTTEI RNMLY S+G V + L
Sbjct: 74 LSNQKLRDFRQQFGEENVGLLTGDISINRDAAVLVMTTEIFRNMLYGTSIGAVG--TSLH 131
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 332
V+ +VLDE HY++D RGTVWEE IIYCP E+Q++ LSATVANA +L WI ++HG TE
Sbjct: 132 GVEAVVLDECHYMNDRQRGTVWEESIIYCPPEIQLVALSATVANAGQLTEWISEVHGPTE 191
Query: 333 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
LI S RPVPL +YF + L PLL + +N++L K G R +
Sbjct: 192 LIYSDYRPVPLEYYFCSAKGLFPLLSKDQTKINQRL--------------IKTPGKGRGS 237
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
SR P +I+ L HL ++MLPAI+FIF+RR
Sbjct: 238 SRDE------------------------------PGLIELLTHLHEKNMLPAIYFIFSRR 267
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPI 512
CD AV + D +L+ E +++ + F P+A R ++ LL+G+AAHHAG LP
Sbjct: 268 RCDDAVTQVSDLSLVSPKEAAQLHKRVHEFLAKNPEAERTGQLQPLLRGIAAHHAGILPA 327
Query: 513 WKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAG 572
WK +EELFQ GL+KVVFATETLAAGINMPART V+SSLSKRT G L ++E QM+G
Sbjct: 328 WKGLVEELFQAGLIKVVFATETLAAGINMPARTTVISSLSKRTDDGHRLLKASEFLQMSG 387
Query: 573 RAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHL 632
RAGRRG+D RG+VV VQT +EGA+E L G +PLVSQFT +YGMVLNLL
Sbjct: 388 RAGRRGMDERGYVVTVQTRFEGAKEASYLATVGPDPLVSQFTPTYGMVLNLL-------- 439
Query: 633 SNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTS 687
+LEE ++LVE SFG Y+ + L + +L I K+T L S
Sbjct: 440 -----------QTHTLEETKELVESSFGQYLAT---LHLQPKLQDISKQTQELAS 480
Score = 145 bits (365), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 143/262 (54%), Gaps = 20/262 (7%)
Query: 924 EQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKE 983
EQ ++A L+ ++ + +Y VK + + KRL++ ++ +++ + W+E
Sbjct: 642 EQEGRIAALQAQL-KDHPLNQYGHPGTLVKHFK-RYKRLESDLSKVKNKLDSHLTAHWEE 699
Query: 984 FLRISNVIHETRAL-DINTQV-------------IFPLGETAAAIRGENELWLAMVLRNK 1029
FL + N++ + L + TQ + LGE+AAAIRG+NELWL + L +
Sbjct: 700 FLDLINILQQVGCLRQLETQTDGDEDAIENLTFEVTSLGESAAAIRGDNELWLGLALMSG 759
Query: 1030 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEK 1089
L L+P Q A CA+LV+E + W N Y S V ++ L R +LQ +
Sbjct: 760 CLEWLEPHQFACACAALVTEVSRPDNWTN----YNLSREVDGALSQLQGERRKLFQLQHR 815
Query: 1090 HGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV 1149
H V +P L+ Q +VE WA G+ W E+ + +LD+GD+ R+LRRT+D L+QIP +P +
Sbjct: 816 HRVTLPIWLERQLIAIVEEWALGVEWTELCANTSLDEGDIVRMLRRTLDFLSQIPYVPHI 875
Query: 1150 DQRLQKNAVDASNVMDRPPISE 1171
+ L+ NA A +++R P++E
Sbjct: 876 SEGLKVNAYRAIQLINRFPVNE 897
>gi|86609851|ref|YP_478613.1| helicase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558393|gb|ABD03350.1| putative helicase [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 802
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 265/573 (46%), Positives = 344/573 (60%), Gaps = 87/573 (15%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+DEL ++ F +D FQ +I+ G SVVV APT SGKTLI E A ++ +R+FYT
Sbjct: 12 LDELRQLFPFELDDFQIRAIQVLAAGESVVVCAPTGSGKTLIGEYAIYRALSQGKRVFYT 71
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLY--------Q 260
TPLKALSNQKFR+F + FG VGLLTGD +INR+A +L+MTTEI RNMLY Q
Sbjct: 72 TPLKALSNQKFRDFGQQFGPERVGLLTGDISINRDAPVLVMTTEIFRNMLYGTPISLAVQ 131
Query: 261 SVGMVSSESG----------LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 310
+ G L DV ++LDE HY++D RGTVWEE IIYCP +Q+I L
Sbjct: 132 RYAYGERDDGTEFSEGEVDPLRDVQAVILDECHYMNDQQRGTVWEEAIIYCPPTIQLIAL 191
Query: 311 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD--EKGKHM-NRK 367
SAT+AN+D+L W+ Q+HG T LI S+ RPVPL ++F+ + L PLL+ E G+ + NR+
Sbjct: 192 SATLANSDQLTDWMNQVHGPTHLIDSNHRPVPLQFHFANRKGLFPLLEQTESGQWVRNRR 251
Query: 368 LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 427
L S+R NS H+ S + VP
Sbjct: 252 LK------------------SKRPNS-----------------HEPSW--------AGVP 268
Query: 428 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL-DECEMSEVELALKRFRILY 486
+ L +LR RDMLPAI+FIF+R+GCD AV + D +L+ E E ++ + RF
Sbjct: 269 DIAQVLENLRQRDMLPAIYFIFSRKGCDMAVASVRDLDLVASEEERQQLAEQIDRFCRET 328
Query: 487 PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
P+AVR + L +G+AAHHAG LP WK +E LFQ+GLVK+VFATETLAAGINMPART
Sbjct: 329 PEAVRRDQLDALYRGIAAHHAGMLPAWKGLVEHLFQQGLVKLVFATETLAAGINMPARTT 388
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606
V+SSLSKRT +G LT++E QM+GRAGRRG D GHVV VQ+P+EGA+E +L +G
Sbjct: 389 VISSLSKRTDNGHRLLTASEFMQMSGRAGRRGKDIIGHVVTVQSPFEGAQEAARLATSGA 448
Query: 607 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSN 666
+PLVSQFT +YGMVLNLL SLE AR L+ +SFG Y+ S
Sbjct: 449 DPLVSQFTPTYGMVLNLL-------------------QKHSLEAARDLINRSFGQYLLSL 489
Query: 667 VMLAAKDELCKIQ---KETDVLTSEISDDAIDR 696
L + E+ + +E D L I+D+ I R
Sbjct: 490 QKLPEQQEILHTRAELEEIDRLLGGIADEDIAR 522
Score = 129 bits (324), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 131/258 (50%), Gaps = 15/258 (5%)
Query: 918 AVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIE 977
A + Q K+ L+ +I + KK++ EK +RL R + L ++ + ++
Sbjct: 556 AFPHIHAQEEKIRALEAQIRENPAHQVGKKLLGL----REKRQRLLKRLEHLERQSDSVQ 611
Query: 978 PSGWKEFLRISNVIHETRALDINTQVIFPL--GETAAAIRGENELWLAMVLRNKILLDLK 1035
W++F+ + V+ + L Q P GE AA+RG+NELWLA+ L +
Sbjct: 612 ELRWQQFMALVGVLQDFNCL----QEYQPTDSGEVVAALRGDNELWLALALLSGECQGCA 667
Query: 1036 PAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGV-EI 1094
P LA V A+LVSE + S S V +V++ L R Q +H V +
Sbjct: 668 PHHLAGVVAALVSEAPR----SGTYSRLRTSGLVEDVLHGLRGLRRQLFRSQRQHQVFHV 723
Query: 1095 PCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQ 1154
P + +G+VE WA G+ W + LD GDL RL+RRT+DLL+QIP +P + L+
Sbjct: 724 PIGFEPSLAGIVEHWAQGIPWETLEASTNLDAGDLVRLIRRTLDLLSQIPYVPHLPAELR 783
Query: 1155 KNAVDASNVMDRPPISEL 1172
+NA A ++DR P+SEL
Sbjct: 784 ENARQAQKMLDRFPVSEL 801
>gi|22297893|ref|NP_681140.1| hypothetical protein tlr0350 [Thermosynechococcus elongatus BP-1]
gi|22294071|dbj|BAC07902.1| tlr0350 [Thermosynechococcus elongatus BP-1]
Length = 889
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 273/601 (45%), Positives = 359/601 (59%), Gaps = 76/601 (12%)
Query: 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209
D LA + F +D FQ ++I A G SVVV APT SGKTLI E A + Q+R+FYTT
Sbjct: 10 DFLAQL-PFELDAFQAAAIAALDAGRSVVVCAPTGSGKTLIGEYAIHRALTRQQRVFYTT 68
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSE 268
PLKALSNQK+R+F++ FG VGLLTGD +INR+A IL+MTTEI RNMLY + +G V +
Sbjct: 69 PLKALSNQKWRDFQQQFGAAQVGLLTGDISINRDAPILVMTTEIFRNMLYGTPIGEVGT- 127
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L V+V+VLDE HY++D RGTVWEE IIYCPKE+Q++ LSAT+AN ++L WI +H
Sbjct: 128 -SLAGVEVVVLDECHYMNDRQRGTVWEESIIYCPKEIQLVALSATIANGEQLTDWIQSVH 186
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
G ELI S RP+PL +YF L PLLD + K +N KL +
Sbjct: 187 GDAELIYSDWRPIPLHFYFCNGKGLFPLLDGQRKRLNPKL--------------HGQPEL 232
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
RRR S++ D S V S L+ RDMLPAI+FI
Sbjct: 233 RRRGSKR--DFLSIRYVVS---------------------------QLQQRDMLPAIYFI 263
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 508
F+RRGCD AVQ + NLL + E + ++ F + D V I L +G+AAHHAG
Sbjct: 264 FSRRGCDQAVQEVLGMNLLTKAEQQALAERVEAFLAQHQDIVAPEMIAPLYQGIAAHHAG 323
Query: 509 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 568
LP+ K+ +E LFQ GL+K+VFATETLAAGINMPART V+S+LSKRT SG LT++E
Sbjct: 324 VLPVVKTLVETLFQEGLIKLVFATETLAAGINMPARTTVISTLSKRTDSGHRLLTASEFL 383
Query: 569 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 628
QMAGRAGRRG+D GHVV +QTP+EGA E L A +PL+SQFT SYGMVLNLL
Sbjct: 384 QMAGRAGRRGMDTVGHVVTLQTPFEGAHEAAFLATAAPDPLMSQFTPSYGMVLNLL---- 439
Query: 629 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSE 688
+LEEAR+LVE+SFG Y+ + + + + +++ E +
Sbjct: 440 ---------------QRHTLEEARELVERSFGQYLATLQLTPQRQAIAQLEMELQTVQQR 484
Query: 689 ISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFEN 748
++ IDR+ A Y++ L+E L+ ++R L ++ E +R AL ++
Sbjct: 485 LA--GIDRQQL-----AQYQK---LRERLRQDQRLLKILEQQAEQERTQALLPLMMAVPP 534
Query: 749 G 749
G
Sbjct: 535 G 535
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 131/245 (53%), Gaps = 8/245 (3%)
Query: 928 KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRI 987
K+A L+ K+++ +G + V ++ + +RL+ + +++ Q W++FL +
Sbjct: 642 KIADLEAKLSQLQG--SLPQNVHSLLRLVRREERLQTELRDRQQKLHQQSQRHWEQFLAL 699
Query: 988 SNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV 1047
+ + L+ T PLGE AAA+RGENELWLA+ L + L DL P LAA A+LV
Sbjct: 700 IAALQDFGGLNDLTPT--PLGEMAAALRGENELWLALALASGELNDLPPHLLAAAVAALV 757
Query: 1048 SEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVE 1107
+E + W N Y + V + L R ++Q ++ + P + G+VE
Sbjct: 758 TETPRSDSWCN----YPIPSEVEERLAALSPIRRRLFQVQRRYQIIFPLWYEWDLIGLVE 813
Query: 1108 AWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRP 1167
WA G W E+ LD GD+ RLLRRT+D L+QIP P +L+++A A ++DR
Sbjct: 814 QWALGTPWHELCAQTNLDAGDIVRLLRRTLDFLSQIPHAPHTSPQLRQSAQQARYLLDRF 873
Query: 1168 PISEL 1172
P+++L
Sbjct: 874 PVNDL 878
>gi|428219595|ref|YP_007104060.1| DSH domain-containing protein [Pseudanabaena sp. PCC 7367]
gi|427991377|gb|AFY71632.1| DSH domain protein [Pseudanabaena sp. PCC 7367]
Length = 906
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 270/631 (42%), Positives = 365/631 (57%), Gaps = 94/631 (14%)
Query: 146 MIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205
MI +D L ++ F +D+FQ +I A G SVVV+APT SGKTLI E +A +R++
Sbjct: 1 MISLD-LNQLFPFELDQFQLEAIAALEAGKSVVVAAPTGSGKTLIGEYVIYQALATKRQV 59
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLY-----Q 260
FYTTPLKALSNQK R+FRE FG +NVGLLTGD +INR A +L+MTTEI RNMLY
Sbjct: 60 FYTTPLKALSNQKLRDFREQFGADNVGLLTGDVSINRHAPVLVMTTEIFRNMLYGINVSD 119
Query: 261 SVGM--------------------VSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY 300
V M V+ + L ++ +VLDE HY++D RGTVWEE IIY
Sbjct: 120 PVAMAVNDAIEAEGAESISPPEPAVNLKDALANLAAVVLDECHYMNDRQRGTVWEESIIY 179
Query: 301 CPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEK 360
CP +Q++ LSAT+AN+ +L WI Q+HG T LI+S RPVPL ++F L PLLD+K
Sbjct: 180 CPPSIQLVALSATIANSAQLTDWINQVHGPTALISSDYRPVPLQFHFCNNKGLAPLLDQK 239
Query: 361 GKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 420
+ +N KL G R R S++
Sbjct: 240 RQKLNPKLK-----------------GDRNRRSQQFRGRG-------------------- 262
Query: 421 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK 480
RR++ P + + L R MLPAI+FIF+RRGCD AV ++ L++ E + ++ +
Sbjct: 263 -RRNE-PSLGFVVSQLAQRQMLPAIYFIFSRRGCDLAVTEMDKVPLVNADEAARLKEQID 320
Query: 481 RFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 540
F PDA R ++ L KG+AAHHAG LP WK +EELFQ+GL+KVVFATETLAAGIN
Sbjct: 321 AFLSANPDAGRAGQVQALYKGIAAHHAGILPAWKGLVEELFQQGLIKVVFATETLAAGIN 380
Query: 541 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 600
MPART V+SSLSKRT +G L ++E QMAGRAGRRG+D G+VV VQT +EGA++
Sbjct: 381 MPARTTVISSLSKRTDNGHRLLNASEFLQMAGRAGRRGMDRVGYVVTVQTRFEGAKDAAF 440
Query: 601 LLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 660
L A +PL+S FT SYGMVLNLL +LE+A++L+E+SF
Sbjct: 441 LATADADPLMSHFTPSYGMVLNLL-------------------QTHTLEKAQELIERSFS 481
Query: 661 NYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAE 720
Y+ S+++LA ++++ KET + E +D + K+ L++ L+
Sbjct: 482 RYL-SDIVLAPQEQVLA-DKETRIAKLEQELAGVDI--------SLLKDYEKLRDRLREA 531
Query: 721 KRFRTELRRRMELKRFSALKDILKDFENGHL 751
KR R L ++ E +R S L L +G +
Sbjct: 532 KRLRKILIQQAEEQRLSELATYLPYVLSGTI 562
Score = 126 bits (316), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 96/159 (60%), Gaps = 4/159 (2%)
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
+RG+NELWLA+ +R+ L +L P LA VCA+LV+E + W N S TV +
Sbjct: 751 LRGDNELWLALAMRSGELDELDPHHLATVCAALVTENSRSDTWVNLGI----SPTVEEAL 806
Query: 1074 NVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 1133
L + R +Q K V IP LD G++E WA G+ W E+ +LD+GD+ R+
Sbjct: 807 TELHDIRRQLFRMQRKQMVAIPIWLDYDLVGLIEQWALGMEWTELCSHTSLDEGDVVRIA 866
Query: 1134 RRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 1172
RRT+DLL+QIP +P + L+++A A+ ++DR PISE+
Sbjct: 867 RRTLDLLSQIPHVPFLPNSLKQSAKQAAQLIDRFPISEV 905
>gi|170078848|ref|YP_001735486.1| DEAD/DEAH box helicase [Synechococcus sp. PCC 7002]
gi|169886517|gb|ACB00231.1| DEAD/DEAH box helicase protein [Synechococcus sp. PCC 7002]
Length = 957
Score = 464 bits (1194), Expect = e-127, Method: Compositional matrix adjust.
Identities = 353/1105 (31%), Positives = 519/1105 (46%), Gaps = 237/1105 (21%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L ++ F++D+FQ+ +I A SVVV APT SGKT+I E A +A +R+FYTTP
Sbjct: 4 DLNQVFPFQLDQFQKQAIAALDADRSVVVCAPTGSGKTVIGEYAIHRALAMGQRVFYTTP 63
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQKFR+F ETFG+ VGL+TGD IN +A I++MTTEI RNMLY++ +G V +
Sbjct: 64 LKALSNQKFRDFGETFGEKQVGLITGDIIINAQATIVVMTTEIFRNMLYETPIGQVGT-- 121
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L +V +VLDE HY+SD RGTVWEE IIYCP E+QI+ LSAT+ N + WI +
Sbjct: 122 SLENVLTVVLDECHYISDRGRGTVWEESIIYCPSEIQIVGLSATIGNPEIFTAWINKTRQ 181
Query: 330 ------------KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLST 377
+ EL+ S RPVPL + +S K L PLLD+ G+ MN +L
Sbjct: 182 AAHEDHPNSKEHRCELVDSDHRPVPLEFLYSNKKGLYPLLDQGGEKMNTRL--------- 232
Query: 378 SEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437
+ + +R R+ D P + + LR
Sbjct: 233 ---RSRTNAPQGKRKKRQRED---------------------------CPSLFAIVRQLR 262
Query: 438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE----- 492
+D+LPAI+ IF+RRGCD +V L D L+ E +E L F + ++E
Sbjct: 263 QKDLLPAIYIIFSRRGCDRSVTQLNDITLVSPEEAKLLEATLLHFFLDNQGKLQEKLLNQ 322
Query: 493 ----PAIKGLLKGVAAHHAGC-----------LPIWKSFIEELFQRGLVKVVFATETLAA 537
P K L+ A + LP+ + + L Q+ E L
Sbjct: 323 CDDTPEFKALVLDFIAKNPFSTEKLVDYLQENLPLREQLWQYLAQQSKFARPEQVEPLLR 382
Query: 538 GIN------MPA-------------------------------RTAVLSSLSKRTASGRI 560
GI +PA RT V+S+LSKRT G
Sbjct: 383 GIAAHHAGILPAWKELVEKLFEMGLVKLVFATATLAAGINMPARTTVISALSKRTDEGHR 442
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
LT +E QMAGRAGRRG+D G+VV V+TP+EGA+E +L + EPL S FT SYGMV
Sbjct: 443 MLTPSEFLQMAGRAGRRGMDKVGYVVTVETPFEGAKEASRLALSSAEPLRSWFTPSYGMV 502
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
LNLL SLEE+++L+ +SF Y + +L Q+
Sbjct: 503 LNLL-------------------QKHSLEESKELLSRSFAEY-------QVQQQLSPEQE 536
Query: 681 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALK 740
LT+EI+ ID + E ++ + L+E LK E+R LR + EL+ L
Sbjct: 537 AIAELTTEIARLDIDLAA---FDERQFERYSKLKERLKEEERLLGILREQAELENRKLLA 593
Query: 741 DILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLA 800
+L G + L L+ K+ V+ +VPAV +
Sbjct: 594 PLLDQLPLGSI--LHLKGKNLR-VKEAVPAVLV--------------------------- 623
Query: 801 QSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSL 860
+ + ++ LG+D WY E + + FP LAQ + L
Sbjct: 624 ---------EQTEEQQFLCLGTDKRWYLIKETDVVALNEGLFPADQLAQ--------IPL 666
Query: 861 LLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPV---LSSLSESDEVLHMSFEYHD 917
+D+ L + G ++ ++ L + L L+E+ EV
Sbjct: 667 PIDQNLTLGKN-------------GKIDAEAFPLVAAIADYLLPLTEAPEV--------- 704
Query: 918 AVENYKEQRTKVARLKKKIARTEGFKEYK--KIVDTVKFTEEKIKRLKARSKRLTKRIEQ 975
+ Q+ A ++ K A + ++ K K++ + ++ K L R + L ++
Sbjct: 705 -----EAQKQCFAAVQAKFAASPLSQQDKPGKLLKRHQRRKDLRKELN-RRQTLYRQHAN 758
Query: 976 IEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLK 1035
W++FL + V+ E RALD T + LG TAA IRGENELWLA+ L + L L
Sbjct: 759 KRSYYWQDFLNLIEVLQEFRALDGYTPTV--LGRTAATIRGENELWLALCLLSGQLDHLA 816
Query: 1036 PAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV-----------LDEHRSSFL 1084
P LAA +++SE + W + Y V+ V+ + L E R
Sbjct: 817 PEHLAAAICAIISEPPRGDSWTD----YSQPNAVLEVLGIRKKDQGHNPVSLWELRRQLY 872
Query: 1085 ELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP 1144
++Q+ GV +P L+S+F G+VE WA G+ W E+ + +LD+GD+ R+LRRT+D+L QIP
Sbjct: 873 QVQKHCGVTMPVWLESKFIGLVEQWALGVEWTELCENTSLDEGDIVRMLRRTVDVLWQIP 932
Query: 1145 KLPDVDQRLQKNAVDASNVMDRPPI 1169
++P++ L + A +A M R P+
Sbjct: 933 QIPEIKPVLMRTAKEAIAKMKRFPV 957
>gi|303291135|ref|XP_003064854.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226453880|gb|EEH51188.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1584
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 283/691 (40%), Positives = 375/691 (54%), Gaps = 103/691 (14%)
Query: 132 VEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIA 191
+E L +E + V ++ ++ F D FQ + EA +RG VVVSAPT SGKTL+
Sbjct: 255 LEALVRRAREDPSYAPTVADIENLNAFPFDPFQSEAAEALIRGDCVVVSAPTGSGKTLVG 314
Query: 192 EAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINR-EAQILIMT 250
E A V + ++ YTTPLKALSNQK REF++ FG VGL TGD IN +A +++MT
Sbjct: 315 EVAIVNALLRGQKAIYTTPLKALSNQKLREFQKIFGPRRVGLKTGDVEINAADADVVVMT 374
Query: 251 TEILRNMLYQSVG------------------MVSSESGLFD-----VDVIVLDEVHYLSD 287
TEILRNMLY S G ++ ++G D V V++LDEVHYLSD
Sbjct: 375 TEILRNMLYPSAGAEDAGGGGVTVDVPSSAVVIGEDAGRADGRLEGVGVVILDEVHYLSD 434
Query: 288 ISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH--GKT--ELITSSRRPVPL 343
SRGTVWEE IIY P VQ++CLSATV N D+LAGWI +H G T E++ S RPVPL
Sbjct: 435 ASRGTVWEETIIYLPSAVQLLCLSATVGNPDDLAGWIEDVHCRGGTQCEVVQSDYRPVPL 494
Query: 344 TWYFSTKTA-----LLPLLDEKGKHMNRKL----------------SLNYLQLSTS---- 378
TW+FS K L PLL+ G ++ +L Y S
Sbjct: 495 TWHFSMKPGHMYPGLGPLLNRAGTRLHHELFPFTKEGAREWANANGGDGYGSYGNSFDDR 554
Query: 379 -----EVKPYKDGGSRRRNSR-------------KHADMNSNNIVTSFGQHQLSKNSINA 420
+ Y +GG RRN+ + F S +
Sbjct: 555 YGVGDDDDGYYEGGFFRRNNNDRGRGRGGGGGRGRRGSGGGGGGGRRFPPPPPSPATDKQ 614
Query: 421 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN--LLDECEMSEVELA 478
RR VP V T+ L + +MLPA+WF+F+R+GCD A +YL C L+ E E+
Sbjct: 615 QRRRLVPHVETTVGQLVAGNMLPAVWFVFSRKGCDQAAEYLCRCGAKLVTPAEEREIAAT 674
Query: 479 LKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 538
L F PDA+R+ AI+ LL G+A+HHAG LP WK +E LFQRGL+KVVFATETLAAG
Sbjct: 675 LDAFARQNPDAIRDDAIEPLLLGIASHHAGLLPGWKGLVEGLFQRGLLKVVFATETLAAG 734
Query: 539 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 598
+NMPAR +VLS+LSKR +G LTSNE QM GRAGRRG D GHVV Q+P+EG EE
Sbjct: 735 VNMPARCSVLSALSKRGDAGPRMLTSNEFMQMCGRAGRRGFDTIGHVVACQSPFEGPEEA 794
Query: 599 CKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQS 658
L+ + + L SQF+ SYGMVLNL ++AGR L R +VEQS
Sbjct: 795 FDLVTSPPDNLRSQFSISYGMVLNL------------------VRAGRPLPMVRSIVEQS 836
Query: 659 FGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELK 718
FGNY+G EL +++++ D L +I ++ + ++ L+E LK
Sbjct: 837 FGNYLGGKAKREQTKELRRLKQQADALREQIE------MGESIVPQDEWRRYVKLEERLK 890
Query: 719 AEKRFRTELRR-----RMELKRFSALKDILK 744
E+R + R + E+ R +A++D L+
Sbjct: 891 EERRLMKIISRQSWDMKAEMAR-AAIRDFLE 920
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 101/175 (57%), Gaps = 5/175 (2%)
Query: 999 INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKN 1058
++T + PLGE A +RGENELWL + L + + DL QLA V ++ ++ +
Sbjct: 1415 VDTLTLTPLGEVCATLRGENELWLGVALSDACVADLDEYQLAGVFGAICADANR-----P 1469
Query: 1059 NSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREM 1118
SS Y+PS + + L+ + + +Q + G+ L + + EAWASG TW ++
Sbjct: 1470 ASSSYDPSAKLRAALRNLEPIAAGVMTVQYEAGMSSSVTLSDGVAALCEAWASGATWDQI 1529
Query: 1119 MMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELA 1173
D LD+GD+AR+ RRT +LLAQ P+ ++ + ++K A A ++ RPPI++L+
Sbjct: 1530 RRDTNLDEGDIARVFRRTAELLAQAPRTRELPESVRKRAKAAEKLVLRPPITDLS 1584
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%)
Query: 913 FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKR 972
F + + EQR KVA +++I + E ++ V EK+ L R RL KR
Sbjct: 1200 FGLDETLRFLTEQRAKVAATRREIDEMKNVAELRRAVKLNNRKREKLSTLDKRISRLEKR 1259
Query: 973 IEQIEPSGWKEFLRISNVIHETRAL 997
+ + +GW EFLR+ +++ E AL
Sbjct: 1260 VGEYAAAGWAEFLRVVDILVEMGAL 1284
>gi|37522164|ref|NP_925541.1| helicase [Gloeobacter violaceus PCC 7421]
gi|35213164|dbj|BAC90536.1| gll2595 [Gloeobacter violaceus PCC 7421]
Length = 879
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 261/596 (43%), Positives = 344/596 (57%), Gaps = 75/596 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+L ++ F +D FQR +I A SVVV APT SGKT+IAE +A ++R+FYTTP
Sbjct: 8 DLLQLFPFDLDDFQREAIAALDENESVVVCAPTGSGKTVIAEYMVYRALAREKRVFYTTP 67
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
LKALSNQKFR+F FG VGLLTGD ++NR+A +++MTTEI RNMLY GM E G
Sbjct: 68 LKALSNQKFRDFCSQFGPEQVGLLTGDISLNRDAPVVVMTTEIFRNMLY---GMPLGEMG 124
Query: 271 --LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L V+ ++LDE HY++D RGTVWEE IIYCP +Q++ LSAT+ANA +L WI ++H
Sbjct: 125 TTLAQVEAVILDECHYMNDSQRGTVWEESIIYCPANIQLVALSATIANAGQLTDWITRVH 184
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
G T LI S RPVPL +F + L PLLD + +N
Sbjct: 185 GPTRLIYSDFRPVPLEIHFCSPKGLFPLLDRGNQRINPHF-------------------- 224
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
+N +KH G+ L ++ P + L RDMLPAI+FI
Sbjct: 225 --KNIKKHLR----------GERNLQADA---------PSHKYVIGQLARRDMLPAIYFI 263
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 508
F+RRGCD A++ L D LLD E ++ + F +P+AVR + + G+A HHAG
Sbjct: 264 FSRRGCDQALEELGDLCLLDAHEQEQLARQVDDFVREHPEAVRTHQLSQIYNGLAVHHAG 323
Query: 509 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 568
LP WK+ IEELFQ+GL+KVVFATETLAAGINMPART V+S LSKRT SG L ++E
Sbjct: 324 VLPAWKALIEELFQQGLIKVVFATETLAAGINMPARTTVISMLSKRTDSGHRPLNASEFL 383
Query: 569 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 628
QMAGRAGRRG+D GHVV +Q+P+E A E L + +PLVSQFT SYGMVLNLL
Sbjct: 384 QMAGRAGRRGMDEVGHVVTLQSPFESAPEAAALALSQADPLVSQFTPSYGMVLNLL---- 439
Query: 629 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSE 688
SLE A++LV SFG Y+ + + + E ++ E + L
Sbjct: 440 ---------------ERHSLETAQRLVGNSFGQYLATLHLEPVRREHAEVSAELEALA-- 482
Query: 689 ISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILK 744
DA +SEA L+ +L+ +R + L+ + + +R AL+ LK
Sbjct: 483 -GGDAP-------VSEAELAAYEKLRGQLREARRLQMILKEQADREREQALEGQLK 530
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 118/212 (55%), Gaps = 6/212 (2%)
Query: 960 KRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENE 1019
++L R +RL +++ W+EFLR+ V+ + LD + LG AAAIRG+NE
Sbjct: 672 EKLLKRHQRLAEQLSGESDRYWQEFLRLVRVLEKVEFLDNHKPNA--LGAVAAAIRGDNE 729
Query: 1020 LWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 1079
LWLA+ L N + L Q+A + A+LVSE + W + PS V I L +
Sbjct: 730 LWLALALLNPEVEKLNAVQMAGLAAALVSEPPRPNTW----ATVTPSPQVEEAIAALQQT 785
Query: 1080 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 1139
R + + LQ + V I L+ + G+VE WA G+ W+ + LD+GDL RLLRRT DL
Sbjct: 786 RRNLVRLQRRQQVLISVWLEERLVGLVELWAKGVDWQTLCGSTNLDEGDLVRLLRRTADL 845
Query: 1140 LAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 1171
L Q+P +P + +++ ++ ++DR P+SE
Sbjct: 846 LRQVPHVPYLTDTVRQTCAESQRLLDRFPVSE 877
>gi|254413640|ref|ZP_05027410.1| DSHCT domain family [Coleofasciculus chthonoplastes PCC 7420]
gi|196179747|gb|EDX74741.1| DSHCT domain family [Coleofasciculus chthonoplastes PCC 7420]
Length = 884
Score = 458 bits (1178), Expect = e-125, Method: Compositional matrix adjust.
Identities = 275/681 (40%), Positives = 373/681 (54%), Gaps = 115/681 (16%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
+++ F +D+FQ +I A SVVV APT SGKTLI E A ++ R+FYTTPLKA
Sbjct: 14 NLFPFPLDQFQLQAIAALNANHSVVVCAPTGSGKTLIGEYAIYRALSRGGRVFYTTPLKA 73
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSESGLF 272
LSNQK R+FR TFG +NVGL+TGD +INR+A IL+MTTEI RNMLY + +G + + L
Sbjct: 74 LSNQKLRDFRATFGADNVGLVTGDVSINRDAPILVMTTEIFRNMLYGTRIGEIG--TSLE 131
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 332
V+ +VLDE HY++D RGTVWEE IIYCP EVQ++ LSATVAN+D+L W+ +HG TE
Sbjct: 132 GVEAVVLDECHYMNDRQRGTVWEESIIYCPPEVQLVALSATVANSDQLTDWLNLVHGATE 191
Query: 333 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
I S RPVPL + F+ + PLLD +N +L + +P
Sbjct: 192 RIYSDFRPVPLQFSFANPKGIFPLLDSNQTKLNPRLKPKRNKGRGRGGRP---------- 241
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+ SN V L L+ RDMLPAI+FIF+RR
Sbjct: 242 -----ESPSNAFV---------------------------LAQLQQRDMLPAIYFIFSRR 269
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPI 512
GCD +V+ L + +L++ E +E++ + F P+A R + L +G+AAHHAG LP
Sbjct: 270 GCDRSVEELGELSLVNAKEAAELKKRIDEFLRRNPEAGRAGQVAPLYRGIAAHHAGILPA 329
Query: 513 WKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAG 572
WK F+EELFQ GLVKVVFATETLAAGINMPART V+S+LSKRT G LT++E QMAG
Sbjct: 330 WKGFVEELFQLGLVKVVFATETLAAGINMPARTTVISTLSKRTDRGHRLLTASEFLQMAG 389
Query: 573 RAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHL 632
RAGRRG+D G+VV VQTP+EGA+E L + +PLVSQFT +YGMVLNLL
Sbjct: 390 RAGRRGMDATGYVVTVQTPFEGAKEAAYLATSQADPLVSQFTPNYGMVLNLL-------- 441
Query: 633 SNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKE---TDVLTSEI 689
+L EA++LVE+SF Y+ + + + + ++ E D+ + +
Sbjct: 442 -----------QTHTLPEAKELVERSFAQYLATLYLQPQQQAITELTTELAKLDIQLAPV 490
Query: 690 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 749
+A+ R + L+E LK E+R L+R+ + + + + I+ + G
Sbjct: 491 DLNALGRYEK-------------LKERLKEERRLLKTLQRQAQAAQVAEIAQIIPEAPLG 537
Query: 750 HLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDT 809
L L +Y V +PA+ + K S
Sbjct: 538 TLLSLKGKYIP---VPEPIPAILVAKEKGRGQS--------------------------- 567
Query: 810 QDVKPSYYVALGSDNTWYTFT 830
Y V L +DN WY T
Sbjct: 568 -----PYLVCLSADNRWYIAT 583
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 112/194 (57%), Gaps = 8/194 (4%)
Query: 981 WKEFLRISNVIHETRAL-DINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 1039
W+EFL + ++ L D+ LG+ AAAIRG+NELWL + L + L P L
Sbjct: 698 WQEFLNLIEILRTFGCLEDVKPTS---LGQAAAAIRGDNELWLGLALMSSAFDQLDPHHL 754
Query: 1040 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
AA +LV+E + W N Y PS V+ ++ L + R +Q ++ V +P L+
Sbjct: 755 AACACALVTETPRPDSWTN----YPPSEPVLAPLDSLRQTRHQLFRVQRRYQVALPIWLE 810
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 1159
G+VE WA G+ W E+ D +LD+GD+ RLLRRT+D L+QIP +P + L++NA+
Sbjct: 811 RDLIGLVEQWALGVEWTELCADTSLDEGDIVRLLRRTVDFLSQIPHVPFLSDGLKRNAIR 870
Query: 1160 ASNVMDRPPISELA 1173
A ++DR P++EL
Sbjct: 871 AIQLLDRFPVNELG 884
>gi|33865170|ref|NP_896729.1| DNA helicase [Synechococcus sp. WH 8102]
gi|33638854|emb|CAE07151.1| putative DNA helicase [Synechococcus sp. WH 8102]
Length = 909
Score = 457 bits (1177), Expect = e-125, Method: Compositional matrix adjust.
Identities = 249/540 (46%), Positives = 330/540 (61%), Gaps = 57/540 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
+ I+ F +D FQ +I+A +G SVVVSAPT SGKTL+ E A +A+ +++FYTTPLK
Sbjct: 9 SKIFPFPLDDFQLEAIDALNQGHSVVVSAPTGSGKTLVGEYAIHRALAHGQKVFYTTPLK 68
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK R+FRE +GD+NVGL+TGD ++NREA I++MTTEI RNMLY + L
Sbjct: 69 ALSNQKLRDFREAYGDDNVGLMTGDLSVNREASIVVMTTEIFRNMLYAEAS--EQDDPLA 126
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 332
DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI ++HG T
Sbjct: 127 DVEAVVLDECHYMNDSQRGTVWEESIIHCPPSVQLVALSATVANAGQLTDWIQKVHGPTT 186
Query: 333 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
L+ S RPVPL + F + L PLL++ G ++ K ++ +R
Sbjct: 187 LVLSDYRPVPLQFSFCSAKGLHPLLNDAGTGLH------------PNCKVWRAPKGHKRK 234
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R SF Q+++ RDMLPAI+FIF+RR
Sbjct: 235 GRSAKPPQPEPPPISFVVAQMAE-----------------------RDMLPAIYFIFSRR 271
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGCLP 511
GCD AV+ L L+++ E + + LK + P+AVR+ LL+G+AAHHAG LP
Sbjct: 272 GCDKAVRDLGIQCLVNKEEQARIRARLKAYSSENPEAVRDGIHADALLRGIAAHHAGVLP 331
Query: 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMA 571
WK IEELFQ+GLVKVVFATETLAAGINMPART V+++LSKRT G L +E QMA
Sbjct: 332 AWKELIEELFQQGLVKVVFATETLAAGINMPARTTVIAALSKRTERGHRPLMGSEFLQMA 391
Query: 572 GRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMH 631
GRAGRRG+D+RG+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 392 GRAGRRGLDSRGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNLL------- 444
Query: 632 LSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISD 691
L +AR+LVE+SFG Y+ S ++ +D L +++ + L D
Sbjct: 445 ------------QRHDLNKARELVERSFGRYLASLDLVEEEDVLSQLRLQLGQLEGVAGD 492
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 108/191 (56%), Gaps = 6/191 (3%)
Query: 981 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 1040
W+ FL + ++ + LD T +G T AA+RG+NELWL + L + L DL LA
Sbjct: 706 WETFLALLEILQQFGCLDELTPT--EIGRTVAALRGDNELWLGLALMSGHLDDLSAPDLA 763
Query: 1041 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 1100
AV ++ +E + LW S + P ++ L R L QE+ GV +P +
Sbjct: 764 AVFEAISTEVNRPDLW----SGFPPPPAAEEALHDLSGLRRELLRAQERLGVVLPAWWEP 819
Query: 1101 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDA 1160
+ G+VE+WA G W +++ + +LD+GD+ R++RRT+DLLAQ+P + ++L+ +A A
Sbjct: 820 ELMGLVESWARGTDWSDLIANTSLDEGDVVRIMRRTVDLLAQVPYCEAISEQLRSHARQA 879
Query: 1161 SNVMDRPPISE 1171
++R P++E
Sbjct: 880 LRAINRFPVAE 890
>gi|72382836|ref|YP_292191.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Prochlorococcus marinus str. NATL2A]
gi|72002686|gb|AAZ58488.1| helicase, C-terminal protein:DEAD/DEAH box helicase, N-terminal
protein [Prochlorococcus marinus str. NATL2A]
Length = 927
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/514 (47%), Positives = 328/514 (63%), Gaps = 61/514 (11%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
I+ F +D+FQ +I++ +G SVVVSAPT SGKTLI E A +++ ++FYTTPLKAL
Sbjct: 23 IFPFALDEFQLKAIDSLNQGHSVVVSAPTGSGKTLIGEYAIYRAISHGSKVFYTTPLKAL 82
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK R+FR FG +NVGLLTGD ++NREA IL+MTTEI RNMLY + ++ L D+
Sbjct: 83 SNQKLRDFRNQFGSSNVGLLTGDLSLNREASILVMTTEIFRNMLYAAAD--RNDDPLLDI 140
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+ +VLDE HY++D RGTVWEE II+CPK VQ + LSATVANA +L WI Q+HG T+LI
Sbjct: 141 ETVVLDECHYMNDAHRGTVWEESIIHCPKSVQFVALSATVANAGQLTDWIEQVHGPTDLI 200
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
+S RPVPL + F + L PLL++KG H N K+ +P K R R
Sbjct: 201 SSDLRPVPLEFNFCSAKGLHPLLNDKGTGLHPNCKI-----------WRPTKSHKKRGR- 248
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
LSK + + + P + + L R+MLPAI+FIF+RR
Sbjct: 249 --------------------LSKPT-----QPEAPSLGFVISKLAERNMLPAIYFIFSRR 283
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-AIKGLLKGVAAHHAGCLP 511
GCD AV+ + L+++ E ++ +++ IL + +R+ I+ L GVA+HHAG LP
Sbjct: 284 GCDKAVKTIASTCLVNQEERKSIQDRFEKYVILNSEGLRDDLHIQALFNGVASHHAGVLP 343
Query: 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMA 571
WK IEELFQ GL+KVVFATETLAAGINMPART ++S+LSKR+ +G QL +E QMA
Sbjct: 344 AWKELIEELFQEGLIKVVFATETLAAGINMPARTTIISTLSKRSDNGHRQLMGSEFLQMA 403
Query: 572 GRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMH 631
GRAGRRG+D+RG+VV +QT +EG E +L + +PL+SQFT SYGMVLNLL +
Sbjct: 404 GRAGRRGLDSRGYVVTLQTRFEGVREAGQLATSPADPLISQFTPSYGMVLNLLQRYE--- 460
Query: 632 LSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665
L+++++L+E+SF Y+ S
Sbjct: 461 ----------------LDKSKELIERSFSRYLAS 478
Score = 135 bits (340), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 111/192 (57%), Gaps = 8/192 (4%)
Query: 981 WKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 1039
W+ FL + V++ LD +N I G + ++RGENELWL +VL + L +L P +L
Sbjct: 718 WETFLSLIKVLNHFGCLDDLNPTEI---GRSIGSLRGENELWLGLVLMSGHLDELTPTEL 774
Query: 1040 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
A V S+ +E + LW S + PS N L R +QE+ G+EIP
Sbjct: 775 AGVVQSIATEVNRPDLW----SGFIPSAVADEAFNDLSNIRRELFRVQERFGIEIPILWS 830
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 1159
S+ G+VEAWA G +W +++ + +LD+GD+ R+LRRT DLL+QIP V ++L+ NA
Sbjct: 831 SELMGLVEAWARGSSWTDLISNTSLDEGDVVRILRRTNDLLSQIPYCESVSRQLRNNAKA 890
Query: 1160 ASNVMDRPPISE 1171
A +MDR P+ E
Sbjct: 891 AMKLMDRFPVRE 902
>gi|124026572|ref|YP_001015687.1| DNA helicase [Prochlorococcus marinus str. NATL1A]
gi|123961640|gb|ABM76423.1| putative DNA helicase [Prochlorococcus marinus str. NATL1A]
Length = 927
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 242/514 (47%), Positives = 328/514 (63%), Gaps = 61/514 (11%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
I+ F +D+FQ +I++ +G SVVVSAPT SGKTLI E A +++ ++FYTTPLKAL
Sbjct: 23 IFPFALDEFQLKAIDSLNQGHSVVVSAPTGSGKTLIGEYAIYRAISHGSKVFYTTPLKAL 82
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK R+FR FG +NVGLLTGD ++NREA IL+MTTEI RNMLY + ++ L D+
Sbjct: 83 SNQKLRDFRNQFGSSNVGLLTGDLSLNREASILVMTTEIFRNMLYAAAD--RNDDPLLDI 140
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+ +VLDE HY++D RGTVWEE II+CPK VQ + LSATVANA +L WI Q+HG T+LI
Sbjct: 141 ETVVLDECHYMNDAHRGTVWEESIIHCPKSVQFVALSATVANAGQLTDWIEQVHGPTDLI 200
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
+S RPVPL + F + L PLL++KG H N K+ +P K R R
Sbjct: 201 SSDLRPVPLEFNFCSAKGLHPLLNDKGTGLHPNCKI-----------WRPTKSHKKRGR- 248
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
LSK + + + P + + L R+MLPAI+FIF+RR
Sbjct: 249 --------------------LSKPT-----QPESPSLGFVISKLAERNMLPAIYFIFSRR 283
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-AIKGLLKGVAAHHAGCLP 511
GCD AV+ + L+++ E ++ +++ IL + +R+ I+ L G+A+HHAG LP
Sbjct: 284 GCDKAVKTIASTCLVNQEERKSIQDRFEKYVILNSEGLRDDLHIQALFNGIASHHAGVLP 343
Query: 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMA 571
WK IEELFQ GL+KVVFATETLAAGINMPART ++S+LSKR+ +G QL +E QMA
Sbjct: 344 AWKELIEELFQEGLIKVVFATETLAAGINMPARTTIISTLSKRSDNGHRQLMGSEFLQMA 403
Query: 572 GRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMH 631
GRAGRRG+D+RG+VV +QT +EG E +L + +PL+SQFT SYGMVLNLL +
Sbjct: 404 GRAGRRGLDSRGYVVTLQTRFEGVREAGQLATSPADPLISQFTPSYGMVLNLLQRYE--- 460
Query: 632 LSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665
L+++++L+E+SF Y+ S
Sbjct: 461 ----------------LDKSKELIERSFSRYLAS 478
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 111/192 (57%), Gaps = 8/192 (4%)
Query: 981 WKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 1039
W+ FL + V++ LD +N I G + ++RGENELWL +VL + L +L P +L
Sbjct: 718 WETFLSLIKVLNHFGCLDDLNPTEI---GRSIGSLRGENELWLGLVLMSGHLDELTPTEL 774
Query: 1040 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
A V S+ +E + LW S + PS N L R +QE+ G+EIP
Sbjct: 775 AGVVQSIATEVNRPDLW----SGFIPSAVADEAFNDLSNIRRELFRVQERFGIEIPILWS 830
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 1159
S+ G+VEAWA G +W +++ + +LD+GD+ R+LRRT DLL+QIP V ++L+ NA
Sbjct: 831 SELMGLVEAWARGSSWTDLISNTSLDEGDVVRILRRTNDLLSQIPYCESVSRQLRNNAKA 890
Query: 1160 ASNVMDRPPISE 1171
A +MDR P+ E
Sbjct: 891 AMKLMDRFPVRE 902
>gi|116071149|ref|ZP_01468418.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
gi|116066554|gb|EAU72311.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
Length = 926
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 242/511 (47%), Positives = 317/511 (62%), Gaps = 57/511 (11%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F +D FQ +++A +G SVVVSAPT SGKTL+ E A +A+ +++FYTTPLKALS
Sbjct: 28 FAFPLDDFQLEAVDALNQGHSVVVSAPTGSGKTLVGEYAIYRALAHGQKVFYTTPLKALS 87
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK R+FRE FGD NVGLLTGD ++NREA I++MTTEI RNMLY + L DV+
Sbjct: 88 NQKLRDFREQFGDENVGLLTGDLSVNREASIVVMTTEIFRNMLYAEAD--EHDDPLADVE 145
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELIT 335
+VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI ++HG T LI
Sbjct: 146 AVVLDECHYMNDSQRGTVWEESIIHCPPPVQLVALSATVANAGQLTDWIEKVHGPTTLIV 205
Query: 336 SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 395
S RPVPL + F + L PLL+E G ++ K ++ ++R R
Sbjct: 206 SDHRPVPLQFSFCSAKGLHPLLNEAGTGLH------------PNCKVWRAPKGQKRKGRS 253
Query: 396 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCD 455
N + + P + + + RDMLPAI+FIF+RR CD
Sbjct: 254 -----------------------NKPPQPEAPPISFVVAQMAQRDMLPAIYFIFSRRNCD 290
Query: 456 AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGCLPIWK 514
+V+ L L+ + E + + L + + P+AVR+ LL+G+AAHHAG LP WK
Sbjct: 291 KSVRDLGAQCLVTQDEQARIHARLSAYSVANPEAVRDGIHADALLRGIAAHHAGVLPAWK 350
Query: 515 SFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRA 574
IEELFQ+GLVKVVFATETLAAGINMPAR+ V++SLSKRT G L +E QMAGRA
Sbjct: 351 ELIEELFQQGLVKVVFATETLAAGINMPARSTVIASLSKRTERGHRPLMGSEFLQMAGRA 410
Query: 575 GRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSN 634
GRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 411 GRRGLDSQGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNLL---------- 460
Query: 635 ESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665
SLE+AR+LV++SFG Y+
Sbjct: 461 ---------QRHSLEKARELVQRSFGRYLAG 482
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 111/194 (57%), Gaps = 10/194 (5%)
Query: 981 WKEFLRISNVIHETRALDI--NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 1038
W FL + +++ + LD T+V G T AA+RG+NELWL + L + L +L P
Sbjct: 722 WDMFLALKDILQQFGCLDDLDPTEV----GRTVAALRGDNELWLGLALMSGHLDELDPPN 777
Query: 1039 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 1098
LAAV ++ +E + LW S + PS + L R L QE+ V +P
Sbjct: 778 LAAVFEAISTEVNRPDLW----SGFPPSGPAEEALQDLSGLRRELLRAQERASVVVPAWW 833
Query: 1099 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 1158
+ + G+VEAWA G +W +++ + +LD+GD+ R++RRT+DLLAQ+P + ++L+ +A
Sbjct: 834 EPELMGLVEAWAKGTSWSDLIANTSLDEGDVVRIMRRTVDLLAQVPYCEAISEQLRSHAK 893
Query: 1159 DASNVMDRPPISEL 1172
A ++R P++EL
Sbjct: 894 QALKAINRFPVAEL 907
>gi|148240376|ref|YP_001225763.1| superfamily II RNA helicase [Synechococcus sp. WH 7803]
gi|147848915|emb|CAK24466.1| Superfamily II RNA helicase [Synechococcus sp. WH 7803]
Length = 924
Score = 454 bits (1167), Expect = e-124, Method: Compositional matrix adjust.
Identities = 245/514 (47%), Positives = 319/514 (62%), Gaps = 57/514 (11%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A ++ F++D FQ +I+A +G SVVVSAPT SGKTL+ E A +A+ ++FYTTPLK
Sbjct: 20 AQLFPFQLDDFQLEAIDALNQGHSVVVSAPTGSGKTLVGEYAIYRAIAHGLKVFYTTPLK 79
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK R+FRE FG +NVGL+TGD ++NREA I++MTTEI RNMLY S+ L
Sbjct: 80 ALSNQKLRDFREQFGADNVGLMTGDLSVNREASIVVMTTEIFRNMLYAEAD--QSDDPLA 137
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 332
V+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI ++HG T
Sbjct: 138 GVEAVVLDECHYMNDSQRGTVWEESIIHCPPPVQLVALSATVANAGQLTDWIERVHGPTR 197
Query: 333 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
L+ S RPVPL + F + L PLL+++G ++ K ++ +R
Sbjct: 198 LVVSDFRPVPLQFSFCSAKGLHPLLNDQGTGLH------------PNCKVWRAPKGNKRK 245
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R SF Q++ +R+MLPAI+FIF+RR
Sbjct: 246 GRSQRPPQPEPPPISFVVAQMA-----------------------AREMLPAIYFIFSRR 282
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-AIKGLLKGVAAHHAGCLP 511
GCD AV+ L L+ E E + + LK + P+AVR+ LL+G+AAHHAG LP
Sbjct: 283 GCDKAVRDLGVQCLVSESEQARIRERLKAYTEANPEAVRDGLHADALLRGIAAHHAGVLP 342
Query: 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMA 571
WK IEELFQ+GLVKVVFATETLAAGINMPAR+ V+SSLSKRT G L ++E QMA
Sbjct: 343 AWKELIEELFQQGLVKVVFATETLAAGINMPARSTVISSLSKRTERGHRPLMASEFLQMA 402
Query: 572 GRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMH 631
GRAGRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 403 GRAGRRGLDSKGYVVTVQSRFEGVREAGQLATSPSDPLVSQFTPSYGMVLNLL------- 455
Query: 632 LSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665
L +AR+LVE+SFG Y+ S
Sbjct: 456 ------------QRHDLAKARELVERSFGRYLAS 477
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 113/193 (58%), Gaps = 10/193 (5%)
Query: 981 WKEFLRISNVIHETRALD--INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 1038
W FL + ++ ALD + T++ G T AA+RG+NELWL + L + L DL PA+
Sbjct: 717 WDTFLSLMEILQHFGALDDLVPTEI----GRTVAALRGDNELWLGLALMSGHLDDLPPAE 772
Query: 1039 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 1098
LAAV ++ +E + LW S + P ++ L R L QE+H V +P
Sbjct: 773 LAAVFEAISTEVNRPDLW----SGFPPPPRAEEALHDLSGLRRELLRAQERHQVVVPAWW 828
Query: 1099 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 1158
+ + G+VEAWA G+ W +++ + +LD+GD+ R++RRTIDLLAQ+P + ++L+ +A
Sbjct: 829 EPELMGLVEAWARGVAWNDLIANTSLDEGDVVRIMRRTIDLLAQVPYCEAISEQLRSHAR 888
Query: 1159 DASNVMDRPPISE 1171
A ++R P++E
Sbjct: 889 QALKAINRFPVAE 901
>gi|113954669|ref|YP_731534.1| superfamily II RNA helicase [Synechococcus sp. CC9311]
gi|113882020|gb|ABI46978.1| Superfamily II RNA helicase [Synechococcus sp. CC9311]
Length = 910
Score = 454 bits (1167), Expect = e-124, Method: Compositional matrix adjust.
Identities = 246/542 (45%), Positives = 332/542 (61%), Gaps = 57/542 (10%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+++ ++ F +D FQ SI+A +G SVVVSAPT SGKTL+ E A +A+ +++FYTTP
Sbjct: 4 DVSQLFPFPLDGFQLESIDALNQGHSVVVSAPTGSGKTLVGEYAIHRAIAHGQKVFYTTP 63
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
LKALSNQK R+FRE FG NVGL+TGD ++NREA++++MTTEI RNMLY +
Sbjct: 64 LKALSNQKLRDFREQFGAENVGLMTGDLSVNREARVVVMTTEIFRNMLYAEAD--EHDDP 121
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI ++HG
Sbjct: 122 LADVESVVLDECHYMNDSQRGTVWEESIIHCPPSVQLVALSATVANAGQLTDWIEKVHGP 181
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
T L+ S RPVPL + F + L PLL+E+G ++ K ++ +
Sbjct: 182 TRLVLSDFRPVPLQFSFCSAKGLHPLLNEQGTGIH------------PNCKVWRAPKGHK 229
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
R R SF Q+++ R+MLPAI+FIF+
Sbjct: 230 RKGRSPRPPQPEAPPISFVVAQMAQ-----------------------REMLPAIYFIFS 266
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGC 509
RRGCD AV+ L L+ E E S + L+ + + P+AVR+ LL+G+A+HHAG
Sbjct: 267 RRGCDKAVRDLGVQCLVTEAEQSIIRERLEAYTVANPEAVRDGQHADALLRGIASHHAGV 326
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK IEELFQ+GLVKVVFATETLAAGINMPAR+ V++SLSKRT G L ++E Q
Sbjct: 327 LPAWKELIEELFQQGLVKVVFATETLAAGINMPARSTVIASLSKRTERGHRPLMASEFLQ 386
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
MAGRAGRRG+D +G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 387 MAGRAGRRGLDTQGYVVTVQSRFEGVREAAQLATSPSDPLVSQFTPSYGMVLNLL----- 441
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
L +AR+LVE+SFG Y+ S ++ ++ L +++ + L
Sbjct: 442 --------------QRHDLAKARELVERSFGRYLASLDLVEEEEHLGELRMQLAQLQGTA 487
Query: 690 SD 691
D
Sbjct: 488 GD 489
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 17/229 (7%)
Query: 943 KEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQ 1002
K +++ D E+ + L RS R W+ FL + ++ LD
Sbjct: 676 KHRRRMEDLQHEIRERQQLLHHRSNR-----------HWEIFLALIEILRHFGCLDDLEP 724
Query: 1003 VIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSI 1062
+G T AA+RG+NELWL + L + L +L PA+LAAV ++ +E + LW S
Sbjct: 725 T--EIGRTVAALRGDNELWLGLALMSGHLDELPPAELAAVFEAISTEVNRPDLW----SA 778
Query: 1063 YEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC 1122
+ ++ L R L QE+ V +P + + G+VEAWA G +W +++ +
Sbjct: 779 FPAPPLAEEALHDLSGIRRELLRAQERFKVVVPAWWEPELMGLVEAWAKGTSWNDLIANT 838
Query: 1123 ALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 1171
+LD+GD+ R++RRT+DLLAQ+P + ++L+KNA A ++R P++E
Sbjct: 839 SLDEGDVVRIMRRTVDLLAQVPYCEAISEQLRKNARAALIAINRFPVAE 887
>gi|87125389|ref|ZP_01081235.1| putative DNA helicase [Synechococcus sp. RS9917]
gi|86167158|gb|EAQ68419.1| putative DNA helicase [Synechococcus sp. RS9917]
Length = 924
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 245/514 (47%), Positives = 319/514 (62%), Gaps = 57/514 (11%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A I+ F +D FQ +IEA +G SVVVSAPT SGKTL+ E A +A+++++FYTTPLK
Sbjct: 20 AQIFPFPLDGFQLEAIEALNQGHSVVVSAPTGSGKTLVGEYAIYRAIAHRQKVFYTTPLK 79
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK R+FR FG NVGL+TGD ++NREA I++MTTEI RNMLY + L
Sbjct: 80 ALSNQKLRDFRAQFGAENVGLMTGDLSVNREASIVVMTTEIFRNMLYAEAD--AHRDPLA 137
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 332
DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI ++HG T
Sbjct: 138 DVEAVVLDECHYMNDSQRGTVWEESIIHCPPSVQLVALSATVANAGQLTDWIERVHGPTR 197
Query: 333 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
L+ S RPVPL + F + L PLL+++G ++ K ++ +R
Sbjct: 198 LVLSDHRPVPLQFSFCSAKGLHPLLNDQGTGLH------------PNCKVWRAPKGSKRK 245
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R SF Q+++ RDMLPAI+FIF+RR
Sbjct: 246 GRSPKPPQPEPPPISFVVAQMAE-----------------------RDMLPAIYFIFSRR 282
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGCLP 511
GCD AV+ L L++E E + + K + P+AVR+ LL+G+AAHHAG LP
Sbjct: 283 GCDKAVRDLGAQCLVNENEQARIRERFKAYASANPEAVRDGVHADALLRGIAAHHAGVLP 342
Query: 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMA 571
WK IEELFQ GLVKVVFATETLAAGINMPAR+ V+++LSKRT G L ++E QMA
Sbjct: 343 AWKELIEELFQEGLVKVVFATETLAAGINMPARSTVIAALSKRTERGHRPLMASEFLQMA 402
Query: 572 GRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMH 631
GRAGRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 403 GRAGRRGLDSQGYVVTVQSRFEGVREAGQLATSPSDPLVSQFTPSYGMVLNLL------- 455
Query: 632 LSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665
+ D L +AR+LVE+SFG Y+ S
Sbjct: 456 ---QRHD---------LAKARELVERSFGRYLAS 477
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 111/191 (58%), Gaps = 6/191 (3%)
Query: 981 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 1040
W+ FL + ++ LD +G T AA+RG+NELWL + L + L +L+PA+LA
Sbjct: 717 WETFLALIEILQHFGCLDDLEPT--EIGRTVAALRGDNELWLGLALMSGHLDELQPAELA 774
Query: 1041 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 1100
AV ++ +E + LW S + P ++ L R L QE+ V +P +
Sbjct: 775 AVFEAISTEVNRPDLW----SGFPPPPRAEEALHDLMGIRRELLRAQERAQVVMPAWWEP 830
Query: 1101 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDA 1160
+ G+VEAWASG W +++ + +LD+GD+ R++RRT+DLLAQ+P + ++L+++A A
Sbjct: 831 ELMGLVEAWASGTAWNDLIANTSLDEGDVVRIMRRTVDLLAQVPYCEAISEQLRRHARQA 890
Query: 1161 SNVMDRPPISE 1171
++R P++E
Sbjct: 891 LKAINRFPVAE 901
>gi|159904128|ref|YP_001551472.1| DNA helicase [Prochlorococcus marinus str. MIT 9211]
gi|159889304|gb|ABX09518.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9211]
Length = 924
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 251/575 (43%), Positives = 348/575 (60%), Gaps = 72/575 (12%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
I+ F++D FQ +I+A +G SVVVSAPT SGKTLI E A +A+ +++FYTTPLKA
Sbjct: 22 GIFPFQLDDFQLEAIDALNQGHSVVVSAPTGSGKTLIGEYAIYRAIAHGQKVFYTTPLKA 81
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD 273
LSNQK R+FR FG NVGL+TGD ++NREA I++MTTEI RNMLY V ++ L D
Sbjct: 82 LSNQKLRDFRNQFGSKNVGLMTGDLSVNREASIVVMTTEIFRNMLYAEVD--ENDDPLID 139
Query: 274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 333
V+ +VLDE HY++D RGTVWEE II+CP +Q++ LSATVANA +L WI ++HG TEL
Sbjct: 140 VETVVLDECHYMNDSQRGTVWEESIIHCPSSIQLVALSATVANAGQLTDWIQEVHGPTEL 199
Query: 334 ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 393
+ S RPVPL + F + L PLL++ G ++ K ++ RR
Sbjct: 200 VFSDFRPVPLEFSFCSAKGLHPLLNDAGTGLH------------PNCKVWRPPKGHRRKG 247
Query: 394 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453
R S+ + + + P + + ++ R MLPAI+FIF+RRG
Sbjct: 248 R----------------------SVKPL-QPEAPSIKFVVSNIAERSMLPAIYFIFSRRG 284
Query: 454 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGCLPI 512
CD AV L L++ E ++ L+ + L +AVR+ + L +G+A+HHAG LP
Sbjct: 285 CDKAVNDLGSVCLVNPEEKQRIQARLRSYIQLNSEAVRDGIHVDSLTRGIASHHAGVLPA 344
Query: 513 WKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAG 572
WK IEELFQ+GL+KVVFATETL+AGINMPAR+ V+S LSKRT +G QL +E QMAG
Sbjct: 345 WKELIEELFQQGLIKVVFATETLSAGINMPARSTVISVLSKRTENGHRQLMGSEFLQMAG 404
Query: 573 RAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHL 632
RAGRRG+D++G+VV VQ+ +EG E +L + +PL+SQFT SYGMVLNLL
Sbjct: 405 RAGRRGLDSKGYVVTVQSRFEGVREAGQLATSAADPLISQFTPSYGMVLNLL-------- 456
Query: 633 SNESDDMKALQAGRSLEEARKLVEQSFGNYVGS-------NVMLAAKDELCKIQKETDVL 685
+ DM E++R+L+E+SFG Y+ S ++ +D+L K+Q +
Sbjct: 457 --QRYDM---------EKSRELIERSFGRYLASLDLVDDEELVDQLRDQLGKLQGIAGDI 505
Query: 686 TSEISDDAIDRKSR--------RLLSEAAYKEMAN 712
+D RK R R+L + A + +A+
Sbjct: 506 PWNDFEDYEKRKGRLKEERRLLRILQQQAAETLAH 540
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 109/192 (56%), Gaps = 8/192 (4%)
Query: 981 WKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 1039
W+ F+ + ++ LD ++ I G T A+IRG+NELW+ + L + L +L+PA L
Sbjct: 718 WETFVSLLEILQYFGCLDEVDATEI---GRTIASIRGDNELWIGLALMSGHLDELQPAAL 774
Query: 1040 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
A V + +E + LW + I P +T N L R QE+ ++IP C
Sbjct: 775 AGVLEGISTEVNRPDLW--SGFISSPQST--EAFNDLSGIRRELNSHQERCQIDIPICWS 830
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 1159
+ G+VEAW G++W E++ + +LD+GD+ R++RRTIDLL+QIP + ++L+ NA
Sbjct: 831 PELMGLVEAWGHGVSWSELIANTSLDEGDVVRIIRRTIDLLSQIPHCEAISKQLRDNARL 890
Query: 1160 ASNVMDRPPISE 1171
A ++R P+ E
Sbjct: 891 ALKAINRFPVCE 902
>gi|317968960|ref|ZP_07970350.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. CB0205]
Length = 936
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 248/522 (47%), Positives = 319/522 (61%), Gaps = 61/522 (11%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
DV L ++ F +D FQ +IEA +G SVVVSAPT SGKTLI E A +A+ +++FY
Sbjct: 16 DVPPLEQLFPFSLDDFQLEAIEALNQGHSVVVSAPTGSGKTLIGEYAIHRALAHGQKVFY 75
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTPLKALSNQK R+FRE FG VGL+TGD +NREA I++MTTEI RNMLY +
Sbjct: 76 TTPLKALSNQKLRDFREQFGAERVGLMTGDLTVNREASIVVMTTEIFRNMLY-----AEA 130
Query: 268 ESG---LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
E G L DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI
Sbjct: 131 EQGDDPLADVEAVVLDECHYMNDSQRGTVWEESIIHCPPVVQLVALSATVANAGQLTDWI 190
Query: 325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 384
Q+HG T L+ S RPVPL + F + L PLL+++G ++ +V
Sbjct: 191 EQVHGPTRLVMSDFRPVPLQFSFCSAKGLHPLLNDEGTGLH----------PNCKVWRAP 240
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
GG RR + F Q+++ R+MLPA
Sbjct: 241 KGGRNRRGPKTPRPPQPEAPPLGFVVAQMAE-----------------------REMLPA 277
Query: 445 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI-KGLLKGVA 503
I+FIF+RRGCD AV+ L L+ E + ++ L F P+AVR+ LL+G+A
Sbjct: 278 IYFIFSRRGCDKAVRDLGKVCLVSPQEQARIQARLDVFMAATPEAVRDGGHDDALLRGIA 337
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
AHHAG LP WK IEELFQ+GLVKVVFATETLAAGINMPAR+ V+S+LSKRT G L
Sbjct: 338 AHHAGVLPAWKELIEELFQQGLVKVVFATETLAAGINMPARSTVISALSKRTERGHRPLM 397
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
+E QMAGRAGRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNL
Sbjct: 398 GSEFLQMAGRAGRRGLDSQGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNL 457
Query: 624 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665
L + L +A++LVE+SFG Y+ +
Sbjct: 458 LQRYE-------------------LSKAKELVERSFGRYLAT 480
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 103/189 (54%), Gaps = 9/189 (4%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
E LR + LD + +G T AA+RG+NELWL + L + L +L PA LAA+
Sbjct: 728 EILRFFGCLEGDEGLDPSE-----VGRTVAALRGDNELWLGLALMSGHLDELDPADLAAL 782
Query: 1043 CASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQF 1102
++ +E + LW S Y P ++ L R QE V +P + +
Sbjct: 783 LEAISTEVNRPDLW----SGYPPPPAADEAMHDLRGIRRELQRQQEAGKVVMPVWFEGEL 838
Query: 1103 SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASN 1162
G+V AWA G++W +++ + +LD+GD+ R++RRT+DLLAQIP + ++L+ NA A
Sbjct: 839 MGLVHAWAKGVSWSDLIANTSLDEGDVVRIMRRTVDLLAQIPYCEAISEQLRTNARAALK 898
Query: 1163 VMDRPPISE 1171
++R P+ E
Sbjct: 899 AINRFPVRE 907
>gi|352095918|ref|ZP_08956865.1| DSH domain protein [Synechococcus sp. WH 8016]
gi|351677274|gb|EHA60423.1| DSH domain protein [Synechococcus sp. WH 8016]
Length = 911
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 246/542 (45%), Positives = 330/542 (60%), Gaps = 57/542 (10%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+++ ++ F +D FQ SI+A +G SVVVSAPT SGKTL+ E A +A+ +++FYTTP
Sbjct: 5 DVSQLFPFPLDGFQLESIDALNQGHSVVVSAPTGSGKTLVGEYAIHRAIAHGQKVFYTTP 64
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
LKALSNQK R+FRE FG NVGL+TGD ++NREA++++MTTEI RNMLY +
Sbjct: 65 LKALSNQKLRDFREQFGAENVGLMTGDLSVNREARVVVMTTEIFRNMLYAEAD--EHDDP 122
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI ++HG
Sbjct: 123 LADVESVVLDECHYMNDSQRGTVWEESIIHCPPSVQLVALSATVANAGQLTDWIEKVHGP 182
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
T L+ S RPVPL + F + L PLL+E+G ++ K ++ +
Sbjct: 183 TRLVLSDFRPVPLQFSFCSAKGLHPLLNEQGTGIH------------PNCKVWRAPKGHK 230
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
R R SF Q+++ R+MLPAI+FIF+
Sbjct: 231 RKGRSPRPPQPEAPPISFVVAQMAQ-----------------------REMLPAIYFIFS 267
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-AIKGLLKGVAAHHAGC 509
RRGCD AV+ L L+ E E + + L+ + P+AVR+ LL+G+A+HHAG
Sbjct: 268 RRGCDKAVRDLGVQCLVSEAEQAIIRDRLEAYTAANPEAVRDGLHADALLRGIASHHAGV 327
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP WK IEELFQ+GLVKVVFATETLAAGINMPAR+ V++SLSKRT G L ++E Q
Sbjct: 328 LPAWKELIEELFQQGLVKVVFATETLAAGINMPARSTVIASLSKRTERGHRPLMASEFLQ 387
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
MAGRAGRRG+D +G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 388 MAGRAGRRGLDTQGYVVTVQSRFEGVREAAQLATSPSDPLVSQFTPSYGMVLNLL----- 442
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
L +AR+LVE+SFG Y+ S ++ +D L ++ + L
Sbjct: 443 --------------QRHDLAKARELVERSFGRYLASLDLVEEEDHLGALRMQLAQLQGTA 488
Query: 690 SD 691
D
Sbjct: 489 GD 490
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 111/193 (57%), Gaps = 10/193 (5%)
Query: 981 WKEFLRISNVIHETRALDINTQVIFP--LGETAAAIRGENELWLAMVLRNKILLDLKPAQ 1038
W+ FL + ++ LD + P +G T AA+RG+NELWL + L + L +L PA+
Sbjct: 704 WETFLALIEILRHFGCLD----ALEPTEIGRTVAALRGDNELWLGLALMSGHLDELPPAE 759
Query: 1039 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 1098
LAAV ++ +E + LW S + ++ L R L QE+ V +P
Sbjct: 760 LAAVFEAISTEVNRPDLW----SAFPAPPLAEEALHDLSGIRRELLRAQERFKVVVPAWW 815
Query: 1099 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 1158
+ + G+VEAWA G TW +++ + +LD+GD+ R++RRT+DLLAQ+P + ++L+KNA
Sbjct: 816 EPELMGLVEAWAKGTTWNDLIANTSLDEGDVVRIMRRTVDLLAQVPYCEAISEQLRKNAR 875
Query: 1159 DASNVMDRPPISE 1171
A ++R P++E
Sbjct: 876 AALTAINRFPVAE 888
>gi|78184204|ref|YP_376639.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
gi|78168498|gb|ABB25595.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
Length = 926
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 240/511 (46%), Positives = 316/511 (61%), Gaps = 57/511 (11%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F +D FQ +I+A +G SVVVSAPT SGKTL+ E A +A+ +++FYTTPLKALS
Sbjct: 28 FAFPLDDFQLEAIDALNQGHSVVVSAPTGSGKTLVGEYAIYRALAHGQKVFYTTPLKALS 87
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK R+FRE FGD NVGLLTGD ++NREA I++MTTEI RNMLY + L DV+
Sbjct: 88 NQKLRDFREQFGDENVGLLTGDLSVNREASIVVMTTEIFRNMLYAEAD--EHDDPLADVE 145
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELIT 335
+VLDE HY++D RGTVWEE II+CP +Q++ LSATVANA +L WI ++HG T LI
Sbjct: 146 AVVLDECHYMNDSQRGTVWEESIIHCPPPIQLVALSATVANAGQLTDWIEKVHGPTTLIV 205
Query: 336 SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 395
S RPVPL + F + L PLL+E G ++ K ++ ++R R
Sbjct: 206 SDHRPVPLQFSFCSAKGLHPLLNEAGTGLH------------PNCKVWRAPKGQKRKGRS 253
Query: 396 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCD 455
N + + P + + + RDMLPAI+FIF+RR CD
Sbjct: 254 -----------------------NKPPQPEAPPISFVVAQMAQRDMLPAIYFIFSRRNCD 290
Query: 456 AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGCLPIWK 514
+V+ L L+ + E + ++ + P+AVR+ L++G+AAHHAG LP WK
Sbjct: 291 KSVRDLGAQCLVTQDEQARIQARFAAYSAANPEAVRDGIHADALMRGIAAHHAGVLPAWK 350
Query: 515 SFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRA 574
IEELFQ+GLVKVVFATETLAAGINMPAR+ V++SLSKRT G L +E QMAGRA
Sbjct: 351 ELIEELFQQGLVKVVFATETLAAGINMPARSTVIASLSKRTERGHRPLMGSEFLQMAGRA 410
Query: 575 GRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSN 634
GRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 411 GRRGLDSQGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNLL---------- 460
Query: 635 ESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665
SLE+AR+LV++SFG Y+
Sbjct: 461 ---------QRHSLEKARELVQRSFGRYLAG 482
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 111/194 (57%), Gaps = 10/194 (5%)
Query: 981 WKEFLRISNVIHETRALDI--NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 1038
W FL + +++ + LD T+V G T AA+RG+NELWL + L + L +L P
Sbjct: 722 WDMFLALKDILQQFGCLDDLDPTEV----GRTVAALRGDNELWLGLALMSGHLDELDPPN 777
Query: 1039 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 1098
LAAV ++ +E + LW S + PS + L R L QE+ V +P
Sbjct: 778 LAAVFEAISTEVNRPDLW----SGFPPSGPAEEALQDLSGLRRELLRAQERASVVVPAWW 833
Query: 1099 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 1158
+ + G+VEAWA G +W +++ + +LD+GD+ R++RRT+DLLAQ+P + ++L+ +A
Sbjct: 834 EPELMGLVEAWAKGTSWVDLIANTSLDEGDVVRIMRRTVDLLAQVPYCEAISEQLRSHAK 893
Query: 1159 DASNVMDRPPISEL 1172
A ++R P++EL
Sbjct: 894 QALKAINRFPVAEL 907
>gi|88807355|ref|ZP_01122867.1| putative DNA helicase [Synechococcus sp. WH 7805]
gi|88788569|gb|EAR19724.1| putative DNA helicase [Synechococcus sp. WH 7805]
Length = 924
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/514 (47%), Positives = 320/514 (62%), Gaps = 57/514 (11%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A ++ F +D FQ +I+A +G SVVVSAPT SGKTL+ E A +A+ +++FYTTPLK
Sbjct: 20 AQLFPFPLDDFQLEAIDALNQGHSVVVSAPTGSGKTLVGEYAIYRAIAHGQKVFYTTPLK 79
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK R+FRE FG +NVGL+TGD ++NREA I++MTTEI RNMLY S+ L
Sbjct: 80 ALSNQKLRDFREQFGADNVGLMTGDLSVNREASIVVMTTEIFRNMLYAEAD--ESDDPLA 137
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 332
DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI ++HG T
Sbjct: 138 DVEAVVLDECHYMNDSQRGTVWEESIIHCPLPVQLVALSATVANAGQLTDWIERVHGPTH 197
Query: 333 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
L+ S RPVPL + F + L PLL+++G ++ K ++ +R
Sbjct: 198 LVHSDFRPVPLQFSFCSAKGLHPLLNDQGTGLH------------PNCKVWRAPKGNKRK 245
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R SF Q+++ R+MLPAI+FIF+RR
Sbjct: 246 GRSQRPPQPEPPPISFVVAQMAE-----------------------REMLPAIYFIFSRR 282
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-AIKGLLKGVAAHHAGCLP 511
GCD AV+ L L++E E + + K + P+AVR+ LL+G+AAHHAG LP
Sbjct: 283 GCDKAVRDLGVQCLVNESEQACIRERFKAYAAANPEAVRDGLHADALLRGIAAHHAGVLP 342
Query: 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMA 571
WK +EELFQ+GLVKVVFATETLAAGINMPAR+ V+++LSKRT G L ++E QMA
Sbjct: 343 AWKELVEELFQQGLVKVVFATETLAAGINMPARSTVIAALSKRTERGHRPLMASEFLQMA 402
Query: 572 GRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMH 631
GRAGRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 403 GRAGRRGLDSKGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNLL------- 455
Query: 632 LSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665
L +AR+LVE+SFG Y+ S
Sbjct: 456 ------------QRHDLAKARELVERSFGRYLAS 477
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 115/193 (59%), Gaps = 10/193 (5%)
Query: 981 WKEFLRISNVIHETRALD--INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 1038
W+ FL + ++ ALD + T++ G T AA+RG+NELWL + L + L DL PA+
Sbjct: 717 WETFLALMEILQHFGALDDLVPTEI----GRTVAALRGDNELWLGLALMSGHLDDLPPAE 772
Query: 1039 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 1098
LAAV ++ +E + LW S + P ++ L R L +QE+H V +P
Sbjct: 773 LAAVFEAISTEVNRPDLW----SGFPPPPRAEEALHDLSGIRRELLRVQERHQVVVPAWW 828
Query: 1099 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 1158
+ + G+VEAWA G+ W +++ + +LD+GD+ R++RRTIDLLAQ+P + ++L+ +A
Sbjct: 829 EPELMGLVEAWARGVAWNDLIANTSLDEGDVVRIMRRTIDLLAQVPYCEAISEQLRSHAR 888
Query: 1159 DASNVMDRPPISE 1171
A ++R P++E
Sbjct: 889 QALKAINRFPVAE 901
>gi|33863754|ref|NP_895314.1| DNA helicase [Prochlorococcus marinus str. MIT 9313]
gi|33635337|emb|CAE21662.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9313]
Length = 924
Score = 451 bits (1161), Expect = e-123, Method: Compositional matrix adjust.
Identities = 243/515 (47%), Positives = 320/515 (62%), Gaps = 61/515 (11%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
+I+ F +D+FQ +I A G SVVVSAPT SGKTL+ E A +A+ +++FYTTPLKA
Sbjct: 22 AIFSFPLDEFQLEAIAALNHGHSVVVSAPTGSGKTLVGEYAIHRAIAHGQKVFYTTPLKA 81
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD 273
LSNQK R+FRE FG NVGL+TGD ++NREA I++MTTEI RNMLY ++ L D
Sbjct: 82 LSNQKLRDFREQFGSQNVGLMTGDLSVNREASIVVMTTEIFRNMLYAEAD--QADDPLAD 139
Query: 274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 333
V+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI ++HG T+L
Sbjct: 140 VEAVVLDECHYMNDSQRGTVWEESIIHCPASVQLVALSATVANAGQLTDWIERVHGPTQL 199
Query: 334 ITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
+ S RPVPL + F + L PLL++ GK H N K+ ++ +R
Sbjct: 200 VFSDYRPVPLQFSFCSAKGLHPLLNDAGKGLHPNSKV--------------WRAPKGHKR 245
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
R F Q+++ R+MLPAI+FIF+R
Sbjct: 246 KGRSPKPPQPEPPPIKFVIAQMAE-----------------------REMLPAIYFIFSR 282
Query: 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGCL 510
RGCD +V+ L L+ + ++ L+ + P+AVR+ LL+G+AAHHAG L
Sbjct: 283 RGCDKSVKDLGSQCLVSPTQQEQIRQRLRTYSETNPEAVRDGIHADALLRGIAAHHAGVL 342
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
P WK IEELFQ+GLVKVVFATETLAAGINMPAR+ V+S+LSKRT G L +E QM
Sbjct: 343 PAWKELIEELFQQGLVKVVFATETLAAGINMPARSTVISALSKRTERGHRPLMGSEFLQM 402
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 630
AGRAGRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 403 AGRAGRRGLDSQGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNLL------ 456
Query: 631 HLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665
+ D+K +AR+LVE+SFG Y+ S
Sbjct: 457 ----QRHDLK---------KARELVERSFGRYLAS 478
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 108/191 (56%), Gaps = 6/191 (3%)
Query: 981 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 1040
W+ FL + ++ LD +G T AA+RG+NELWL + L + L DL PA LA
Sbjct: 718 WETFLSLIEILQHFGCLDDLEPT--EIGRTVAAMRGDNELWLGLSLMSGHLDDLHPANLA 775
Query: 1041 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 1100
AV ++ +E + LW S Y P + ++ L R L QE+ V +P +
Sbjct: 776 AVFEAISTEVNRPDLW----SGYPPPASAEEALHDLAGIRRELLRAQERCQVVVPAWWEP 831
Query: 1101 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDA 1160
+ G+V+AWA G W +++ + +LD+GD+ R+LRRT+DLLAQ+P + ++L++NA A
Sbjct: 832 ELMGLVDAWARGTAWSDLIANTSLDEGDVVRILRRTVDLLAQVPYCEAISEQLRRNARLA 891
Query: 1161 SNVMDRPPISE 1171
++R P+ E
Sbjct: 892 LKAINRFPVCE 902
>gi|116073712|ref|ZP_01470974.1| putative DNA helicase [Synechococcus sp. RS9916]
gi|116069017|gb|EAU74769.1| putative DNA helicase [Synechococcus sp. RS9916]
Length = 924
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 247/521 (47%), Positives = 321/521 (61%), Gaps = 63/521 (12%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V +L ++ F +D FQ +I+A +G SVVVSAPT SGKTL+ E A +A+ +++FYT
Sbjct: 16 VIDLNQLFPFPLDDFQLEAIDALNQGHSVVVSAPTGSGKTLVGEYAIHRAIAHGQKVFYT 75
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TPLKALSNQK R+FRE FG NVGL+TGD ++NREA++++MTTEI RNMLY +E
Sbjct: 76 TPLKALSNQKLRDFREQFGAENVGLMTGDLSVNREARVVVMTTEIFRNMLY-----AEAE 130
Query: 269 SG---LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325
G L DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI
Sbjct: 131 EGNDPLADVEAVVLDECHYMNDSQRGTVWEESIIHCPPSVQLVALSATVANAGQLTDWIE 190
Query: 326 QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
++HG T L+ S RPVPL + F + L PLL+E G ++ K ++
Sbjct: 191 RVHGPTRLVLSDFRPVPLQFSFCSAKGLHPLLNEAGTGLH------------PNCKVWRA 238
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
+R R SF Q+++ R MLPAI
Sbjct: 239 PKGHKRKGRSPKPPQPEAPPISFVVAQMAE-----------------------RAMLPAI 275
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-AIKGLLKGVAA 504
+FIF+RRGCD AV+ L L+ E + + LK + P+AVR+ LL+G+AA
Sbjct: 276 YFIFSRRGCDKAVRDLGVQCLVTAEEQARIAARLKAYTAANPEAVRDGLHADALLRGIAA 335
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HHAG LP WK IEELFQ+GLVKVVFATETLAAGINMPAR+ V++SLSKRT G L +
Sbjct: 336 HHAGVLPAWKELIEELFQQGLVKVVFATETLAAGINMPARSTVIASLSKRTERGHRPLMA 395
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+E QMAGRAGRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 396 SEFLQMAGRAGRRGLDSKGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNLL 455
Query: 625 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665
A L +AR+LVE+SFG Y+ S
Sbjct: 456 -------------------ARHDLAKARELVERSFGRYLAS 477
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 109/191 (57%), Gaps = 6/191 (3%)
Query: 981 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 1040
W+ FL + ++ LD +G T AA+RG+NELWL + L + L DL PA+LA
Sbjct: 717 WEIFLALIEILQHFGCLDELQPT--EIGRTVAALRGDNELWLGLALMSGHLDDLPPAELA 774
Query: 1041 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 1100
AV ++ +E + LW S + P ++ L R L QE+ V +P +
Sbjct: 775 AVFEAISTEVNRPDLW----SGFPPPPRAEEALHDLMGIRRELLRAQERCNVVVPAWWEP 830
Query: 1101 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDA 1160
+ G+VEAWA+G W +++ + +LD+GD+ R++RRT+DLLAQ+P + ++L+ +A A
Sbjct: 831 ELMGLVEAWANGCAWNDLIANTSLDEGDVVRIMRRTVDLLAQVPYCEAISEQLRSHARQA 890
Query: 1161 SNVMDRPPISE 1171
++R P++E
Sbjct: 891 LRAINRFPVAE 901
>gi|148243022|ref|YP_001228179.1| superfamily II RNA helicase [Synechococcus sp. RCC307]
gi|147851332|emb|CAK28826.1| Superfamily II RNA helicase [Synechococcus sp. RCC307]
Length = 926
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/540 (45%), Positives = 332/540 (61%), Gaps = 57/540 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A+++ F +D FQ ++ A +G SVVVSAPT SGKTLI E A +A+ +R+FYTTPLK
Sbjct: 24 AALFPFPLDDFQLEAVAALNQGHSVVVSAPTGSGKTLIGEYAIHRALAHGQRVFYTTPLK 83
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK R+FRE FG + VGL+TGD NREA I++MTTEI RNMLY + + L
Sbjct: 84 ALSNQKLRDFREQFGADRVGLMTGDLTANREAPIVVMTTEIFRNMLYAEIE--DGDDPLE 141
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 332
V+ +VLDE HY++D RGTVWEE II+CP +Q++ LSATVANA +L WI Q+HG +
Sbjct: 142 GVEAVVLDECHYMNDSQRGTVWEESIIHCPPAIQLVGLSATVANAGQLTDWIEQVHGPAD 201
Query: 333 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
LI S RPVPL + F + L PLL++KG ++ K ++ R
Sbjct: 202 LIVSDFRPVPLQFSFCSAKGLHPLLNDKGTGLH------------PNCKVWRAPKGHHRR 249
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+ F V Q+++ R M+PAI F+F+RR
Sbjct: 250 GKNPKPPQPEPPSMGF----------------MVAQLVE-------RQMVPAIVFLFSRR 286
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGCLP 511
GCD AV+ L +L++E E E+ LAL+ F P+AVR+ + LL+GVAAHHAG LP
Sbjct: 287 GCDKAVRDLLKASLVNEQEARELRLALEAFAQTSPEAVRDGVHAEALLRGVAAHHAGVLP 346
Query: 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMA 571
WK IE+LFQRGLVKVVFATETLAAGINMPART V+S+LSKRT +G L ++E QMA
Sbjct: 347 AWKELIEQLFQRGLVKVVFATETLAAGINMPARTTVISALSKRTENGHRPLMASEFLQMA 406
Query: 572 GRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMH 631
GRAGRRG+D +G+VV +Q+ +EG E +L + +PLVSQFT SYGMVLNLL +
Sbjct: 407 GRAGRRGLDTQGYVVTMQSRFEGVREAGQLATSPPDPLVSQFTPSYGMVLNLLQRYE--- 463
Query: 632 LSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISD 691
L +A++LVE+SFG Y+ + + + + +++++ ++L + D
Sbjct: 464 ----------------LSKAKELVERSFGRYLATLDLAEDQSRIAELRQQLELLGETVPD 507
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 106/193 (54%), Gaps = 10/193 (5%)
Query: 981 WKEFLRISNVIHETRALD--INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 1038
W+ FL + ++ LD T+V G T AA+RG+NELWL + L + +L PA
Sbjct: 721 WETFLSLIEILQHFGCLDELDPTEV----GRTVAALRGDNELWLGLALMSGHCDELPPAD 776
Query: 1039 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 1098
LA+V ++ +E + LW S Y P ++ L R L QE H V P
Sbjct: 777 LASVLEAISTEVSRPDLW----SAYPPPPQAEETLHDLRGLRRELLRQQEIHAVVFPVWW 832
Query: 1099 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 1158
+ G+V+AWA G +W +++ + +LD+GD+ RLLRRT+DLLAQ+P P V + L+ N
Sbjct: 833 EPDLMGLVKAWAEGESWSDLIANTSLDEGDVVRLLRRTVDLLAQLPYCPAVSEELRSNGR 892
Query: 1159 DASNVMDRPPISE 1171
A +++R P+ E
Sbjct: 893 RALQMINRFPVKE 905
>gi|427704263|ref|YP_007047485.1| superfamily II RNA helicase [Cyanobium gracile PCC 6307]
gi|427347431|gb|AFY30144.1| superfamily II RNA helicase [Cyanobium gracile PCC 6307]
Length = 943
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 246/520 (47%), Positives = 319/520 (61%), Gaps = 59/520 (11%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V L ++ F +D FQ +I+A +G SVVVSAPT SGKTL+ E A +A+ +++FYT
Sbjct: 31 VPPLEQLFPFPLDGFQLEAIDALNQGHSVVVSAPTGSGKTLVGEYAIHRALAHGQKVFYT 90
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TPLKALSNQK R+FR FGD VGLLTGD ++NREAQ+++MTTEI RNMLY + +
Sbjct: 91 TPLKALSNQKLRDFRHQFGDEKVGLLTGDLSLNREAQVVVMTTEIFRNMLYAEIDHADDD 150
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI ++H
Sbjct: 151 P-LADVEAVVLDECHYMNDTQRGTVWEESIIHCPSRVQLVALSATVANAGQLTDWIERVH 209
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVKPYKDG 386
G T LI S RPVPL + F + L PLL+++G H N K+ +P K
Sbjct: 210 GPTRLIHSDFRPVPLAFSFCSAKGLHPLLNDEGTGLHPNCKV-----------WRPPKS- 257
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
+RR+ ++ F Q+++ R+MLPAI+
Sbjct: 258 -TRRKGPKEPRPPQPEAPPIGFVVAQMAE-----------------------REMLPAIY 293
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAH 505
FIF+RR CD +V+ L L++ E + + L F + P+AVRE LL+G+AAH
Sbjct: 294 FIFSRRNCDRSVRDLAKVCLVNPEEQARIRRRLDAFMAVTPEAVREGGHADALLRGIAAH 353
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP WK IEELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT G L +
Sbjct: 354 HAGVLPAWKELIEELFQQGLIKVVFATETLAAGINMPARTTVISALSKRTERGHRPLMGS 413
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E QMAGRAGRRG+D +G+VV VQ+ +EG E L + +PLVSQFT SYGMVLNLL
Sbjct: 414 EFLQMAGRAGRRGLDTQGYVVTVQSRFEGVREAGALATSPADPLVSQFTPSYGMVLNLLQ 473
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665
L +AR+LVE+SFG Y+
Sbjct: 474 RY-------------------DLAKARELVERSFGRYLAG 494
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 111/194 (57%), Gaps = 7/194 (3%)
Query: 981 WKEFLRISNVIHETRALDINTQVIFP--LGETAAAIRGENELWLAMVLRNKILLDLKPAQ 1038
W FL + +++ ALD + + P +G T AA+RG+NELWL + L + L L PA+
Sbjct: 734 WDTFLSLIDILRFFGALD-GEEGLEPTEVGRTVAALRGDNELWLGLALMSGHLDALDPAE 792
Query: 1039 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 1098
LAAV ++ +E + LW Y P ++ L R QE+ V +P
Sbjct: 793 LAAVLEAISTEVNRPDLWCG----YPPPPASEEALHDLRSLRRELQRQQERASVVVPVWW 848
Query: 1099 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 1158
+ + +G+V AWA G +W +++ + +LD+GD+ R+LRRT+DLLAQIP + ++L++N+
Sbjct: 849 EPELTGLVHAWARGASWNDVIANTSLDEGDVVRILRRTVDLLAQIPYCEAISEQLRRNSR 908
Query: 1159 DASNVMDRPPISEL 1172
A ++R P+ E+
Sbjct: 909 MALKAINRFPVCEI 922
>gi|124022170|ref|YP_001016477.1| DNA helicase [Prochlorococcus marinus str. MIT 9303]
gi|123962456|gb|ABM77212.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9303]
Length = 924
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 244/522 (46%), Positives = 324/522 (62%), Gaps = 62/522 (11%)
Query: 147 IDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIF 206
+++D LA I+ F +D+FQ +I A G SVV+SAPT SGKTL+ E A +A+ +++F
Sbjct: 16 LELDPLA-IFSFPLDEFQLEAIAALNHGHSVVISAPTGSGKTLVGEYAIHRAIAHGQKVF 74
Query: 207 YTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVS 266
YTTPLKALSNQK R+FRE FG NVGL+TGD ++NREA I++MTTEI RNMLY
Sbjct: 75 YTTPLKALSNQKLRDFREQFGSQNVGLMTGDLSVNREASIVVMTTEIFRNMLYAEAD--Q 132
Query: 267 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326
++ L DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI +
Sbjct: 133 ADDPLADVEAVVLDECHYMNDSQRGTVWEESIIHCPASVQLVALSATVANAGQLTDWIER 192
Query: 327 IHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVKPYK 384
+HG T+L+ S RPVPL + F + L PLL++ G H N K+ ++
Sbjct: 193 VHGPTQLVFSDYRPVPLQFSFCSAKGLHPLLNDAGTGLHPNSKV--------------WR 238
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
+R R F Q+++ R+MLPA
Sbjct: 239 APKGHKRKGRSPKPPQPEPPPIRFVIAQMAE-----------------------REMLPA 275
Query: 445 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVA 503
I+FIF+RRGCD +V+ L L+ + ++ L+ + P+AVR+ LL+G+A
Sbjct: 276 IYFIFSRRGCDKSVKDLGSQCLVSPTQQEQIRQRLRTYSETNPEAVRDGIHADALLRGIA 335
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
AHHAG LP WK IEELFQ+GLVKVVFATETLAAGINMPAR+ V+S+LSKRT G L
Sbjct: 336 AHHAGVLPAWKELIEELFQQGLVKVVFATETLAAGINMPARSTVISALSKRTERGHRPLM 395
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
+E QMAGRAGRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNL
Sbjct: 396 GSEFLQMAGRAGRRGLDSQGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNL 455
Query: 624 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665
L + D+K +AR+LVE+SFG Y+ S
Sbjct: 456 L----------QRHDLK---------KARELVERSFGRYLAS 478
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 109/192 (56%), Gaps = 8/192 (4%)
Query: 981 WKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 1039
W+ FL + ++ LD ++ I G T AA+RG+NELWL + L + L DL PA L
Sbjct: 718 WETFLSLIEILQHFGCLDDLDPTEI---GRTVAAMRGDNELWLGLALMSGHLDDLHPANL 774
Query: 1040 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
AAV ++ +E + LW S Y P + ++ L R L QE V +P +
Sbjct: 775 AAVFEAISTEVNRPDLW----SGYPPPASAEEALHDLAGIRRELLRAQEHCHVVVPAWWE 830
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 1159
+ G+V+AWA G W +++ + +LD+GD+ R+LRRT+DLLAQ+P + ++L++NA
Sbjct: 831 PELMGLVDAWARGTAWSDLIANTSLDEGDVVRILRRTVDLLAQVPYCEAISEQLRRNARL 890
Query: 1160 ASNVMDRPPISE 1171
A ++R P+ E
Sbjct: 891 ALKAINRFPVCE 902
>gi|87301273|ref|ZP_01084114.1| DEAD/DEAH box helicase-like [Synechococcus sp. WH 5701]
gi|87284241|gb|EAQ76194.1| DEAD/DEAH box helicase-like [Synechococcus sp. WH 5701]
Length = 948
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 246/545 (45%), Positives = 327/545 (60%), Gaps = 57/545 (10%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
+V L ++ F +D FQ +I+A +G SVVVSAPT SGKTL+ E A +A+ +++FY
Sbjct: 28 EVPPLDQLFPFPLDPFQLEAIDALNQGHSVVVSAPTGSGKTLVGEYAIHRALAHGQKVFY 87
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTPLKALSNQK R+FRE FG VGL+TGD ++NREA I++MTTEI RNMLY V
Sbjct: 88 TTPLKALSNQKLRDFREQFGAERVGLMTGDLSVNREAPIVVMTTEIFRNMLYAEVD--RG 145
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
+ L DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI ++
Sbjct: 146 DDPLADVEAVVLDECHYMNDSQRGTVWEESIIHCPPPVQLVALSATVANAGQLTDWIERV 205
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
HG T L+ S RPVPL + F + L PLL+++G ++ K ++
Sbjct: 206 HGPTTLVVSDHRPVPLAFSFCSAKGLHPLLNDQGTGLH------------PNCKVWRAPK 253
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
RR R F Q+++ RDMLPAI+F
Sbjct: 254 GERRKGRSPKPPQPEAAPLPFVVAQMAE-----------------------RDMLPAIYF 290
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHH 506
IF+RR CD AV+ L L++E E + + L F P+AVRE + L +G+AAHH
Sbjct: 291 IFSRRACDKAVRDLGRVCLVNEAEQALIVARLDAFVAATPEAVREGGHAEALTRGIAAHH 350
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
AG LP WK IEELFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT G L +E
Sbjct: 351 AGVLPAWKELIEELFQQGLIKVVFATETLAAGINMPARTTVISALSKRTERGHRPLMGSE 410
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
QMAGRAGRRG+D +G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 411 FLQMAGRAGRRGLDVQGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNLL-- 468
Query: 627 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLT 686
D L +A++LVE+SFG Y+ + ++ + + ++ + L
Sbjct: 469 -------QRYD----------LAKAKQLVERSFGRYLATLDLVEDETNIASLRAQLAQLA 511
Query: 687 SEISD 691
+D
Sbjct: 512 GPTAD 516
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 109/194 (56%), Gaps = 7/194 (3%)
Query: 981 WKEFLRISNVIHETRALDINTQVIFP--LGETAAAIRGENELWLAMVLRNKILLDLKPAQ 1038
W FL + ++ AL + P +G T AA+RG+NELWL + L + L +L PA+
Sbjct: 730 WDTFLALIEILRAFGAL-AGADGLEPTEVGRTVAALRGDNELWLGLALMSGHLDELNPAE 788
Query: 1039 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL 1098
LAAV ++ +E + LW S + P ++ L R L QE+ V +P
Sbjct: 789 LAAVFEAISTEVNRPDLW----SGFPPPPRSEEALHDLSGLRRELLRHQERAHVVVPAWW 844
Query: 1099 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 1158
+ + G+V AWA G +W +++ + +LD+GD+ R+LRRT+DLLAQ+P + ++L+ NA
Sbjct: 845 EPELMGLVHAWARGSSWNDVIANTSLDEGDIVRILRRTVDLLAQVPYAEAISEQLRSNAR 904
Query: 1159 DASNVMDRPPISEL 1172
A ++R P+SE
Sbjct: 905 KALQAINRFPVSEF 918
>gi|33241070|ref|NP_876012.1| superfamily II RNA helicase [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|33238599|gb|AAQ00665.1| Superfamily II RNA helicase [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
Length = 925
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 258/592 (43%), Positives = 349/592 (58%), Gaps = 77/592 (13%)
Query: 140 KEFGNEMIDVD-ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVAT 198
+E N D D +L +I+ F +D FQ +I+A +G SVVVSAPT SGKTLI E A
Sbjct: 3 REVINTTFDDDLDLENIFPFSLDDFQLEAIDALNQGHSVVVSAPTGSGKTLIGEYAIYRA 62
Query: 199 VANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNML 258
+++ +++FYTTPLKALSNQK R+FR FG NVGLLTGD ++NR A I +MTTEI RNML
Sbjct: 63 LSHGQKVFYTTPLKALSNQKLRDFRNQFGYANVGLLTGDLSVNRGAAITVMTTEIFRNML 122
Query: 259 YQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANAD 318
Y V + L +V+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA
Sbjct: 123 YAEVD--ERDDPLDEVETVVLDECHYMNDSQRGTVWEESIIHCPSSVQLVALSATVANAG 180
Query: 319 ELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEK--GKHMNRKLSLNYLQLS 376
+L WI ++HG T+LI S RPVPL + F + L PLL+E G H N K+
Sbjct: 181 QLTDWIQKVHGPTKLIFSDFRPVPLNFNFCSAKGLHPLLNESRTGLHPNCKV-------- 232
Query: 377 TSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL 436
++ ++R SR + + + SF ++++
Sbjct: 233 ------WRPPKGQKRKSRSNKPLQPDAPPISFVIEKMAE--------------------- 265
Query: 437 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-I 495
R+MLPAI+FIF+RRGCD AV+ L +L+ E +E L + P+ VR +
Sbjct: 266 --REMLPAIYFIFSRRGCDKAVKDLGKVDLVSIKEKRIIETRLNTYLKENPEGVRHGIHV 323
Query: 496 KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
L +G+A+HHAG LP WK IEELFQ+ LVK VFATETLAAGINMPAR+ V+SSLSKRT
Sbjct: 324 DALKRGIASHHAGVLPAWKELIEELFQKSLVKTVFATETLAAGINMPARSTVISSLSKRT 383
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 615
+G QL +E QMAGRAGRRG+D++G VV VQ+ +EG E +L + PL+SQFT
Sbjct: 384 ENGHRQLMGSEFLQMAGRAGRRGLDSQGDVVTVQSRFEGVREAGQLATSAANPLISQFTP 443
Query: 616 SYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS-------NVM 668
SYGMVLNLL LE++R+LV++SFG Y+ S ++
Sbjct: 444 SYGMVLNLLQRY-------------------DLEKSRELVQRSFGCYLASLDLFDDEELL 484
Query: 669 LAAKDELCKIQ--------KETDVLTSEISDDAIDRKSRRLLSEAAYKEMAN 712
+D+L K+Q +E +V + S +R+ R+L + A + N
Sbjct: 485 DQLRDQLGKLQSIAGDVPWREFEVYEKQRSRLKEERRLLRILQKQAADTLMN 536
Score = 125 bits (314), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 112/191 (58%), Gaps = 6/191 (3%)
Query: 981 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 1040
W FL + ++ LD +G+T +A+RG+NELWL + L + L +L P+ LA
Sbjct: 714 WDTFLLLMEILQYFGCLDELDHT--DIGKTVSALRGDNELWLGLALMSGHLDELSPSSLA 771
Query: 1041 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 1100
AV ++ +E + LW S + PS + +N L R L QE+ +EIP +
Sbjct: 772 AVLQAISTETNRHDLW----SGFSPSPESMEALNDLSGIRRELLRSQEQLKLEIPVWSEP 827
Query: 1101 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDA 1160
+ G+VE WA+G+TW +++ + +LD+GD+ R++RRTIDLLAQ+P + ++L++NA A
Sbjct: 828 ELMGLVEKWANGITWSDLIANTSLDEGDVVRIMRRTIDLLAQLPYCVAISKQLKRNAAIA 887
Query: 1161 SNVMDRPPISE 1171
++R P+ E
Sbjct: 888 LKGLNRFPVRE 898
>gi|260434531|ref|ZP_05788501.1| superfamily II RNA helicase [Synechococcus sp. WH 8109]
gi|260412405|gb|EEX05701.1| superfamily II RNA helicase [Synechococcus sp. WH 8109]
Length = 803
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 242/540 (44%), Positives = 324/540 (60%), Gaps = 57/540 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
+ I+ F +D FQ +++A +G SVVVSAPT SGKTLI E A +A+ +++FYTTPLK
Sbjct: 24 SEIFPFPLDDFQLEAMDALNQGHSVVVSAPTGSGKTLIGEYAIHRALAHGQKVFYTTPLK 83
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK R+FR+ FG NVGL+TGD ++NREA I++MTTEI RNMLY + L
Sbjct: 84 ALSNQKLRDFRDQFGAENVGLMTGDLSVNREASIVVMTTEIFRNMLYAEAD--EHDDPLA 141
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 332
DV+ +VLDE HY++D RGTVWEE II+CP VQ++ LSATVANA +L WI ++HG T
Sbjct: 142 DVEAVVLDECHYMNDSQRGTVWEESIIHCPPTVQLVALSATVANAGQLTDWIEKVHGPTT 201
Query: 333 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
L+ S RPVPL + F + L PLL+E G ++ K ++ +R
Sbjct: 202 LVMSDHRPVPLQFSFCSAKGLHPLLNEAGTGLH------------PNCKVWRAPKGHKRK 249
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R SF Q+++ R MLPAI+FIF+RR
Sbjct: 250 GRSQRPPQPEPPPISFVVAQMAE-----------------------RQMLPAIYFIFSRR 286
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKGVAAHHAGCLP 511
CD AV+ L L+ + E + ++ L + P+AVR+ LL+G+AAHHAG LP
Sbjct: 287 SCDKAVRDLGVQCLVTQEEQARIKERLTAYSHDNPEAVRDGIHADALLRGIAAHHAGVLP 346
Query: 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMA 571
WK IEELFQ+GLVKVVFATETLAAGINMPAR+ V+++LSKRT G L +E QMA
Sbjct: 347 AWKELIEELFQQGLVKVVFATETLAAGINMPARSTVIAALSKRTERGHRPLMGSEFLQMA 406
Query: 572 GRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMH 631
GRAGRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVLNLL
Sbjct: 407 GRAGRRGLDSQGYVVTVQSRFEGVREAGQLATSPADPLVSQFTPSYGMVLNLL------- 459
Query: 632 LSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISD 691
L +AR+LVE+SFG Y+ ++ ++ L +++ + L D
Sbjct: 460 ------------QRHDLAKARELVERSFGRYLAGLDLVEDEENLSQLRLQLSQLEGVAGD 507
Score = 40.0 bits (92), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 981 WKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKP 1036
W+ FL + ++ LD ++ I G T AA+RG+NELWL + L + L DL P
Sbjct: 721 WETFLALMEILQHFGCLDELDPTEI---GRTVAALRGDNELWLGLALMSGHLDDLSP 774
>gi|78213558|ref|YP_382337.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
gi|78198017|gb|ABB35782.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
Length = 924
Score = 437 bits (1125), Expect = e-119, Method: Compositional matrix adjust.
Identities = 243/550 (44%), Positives = 326/550 (59%), Gaps = 62/550 (11%)
Query: 148 DVDELAS-----IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ 202
DVD A I+ F +D FQ +++A +G SVVVSAPT SGKTLI E A +A+
Sbjct: 14 DVDRSAPLNPSEIFPFPLDDFQLEAMDALNQGHSVVVSAPTGSGKTLIGEYAIHRALAHD 73
Query: 203 RRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSV 262
+++FYTTPLKALSNQK R+FR+ FG NVGL+TGD ++NREA I++MTTEI RNMLY
Sbjct: 74 QKVFYTTPLKALSNQKLRDFRDQFGAENVGLMTGDLSVNREASIVVMTTEIFRNMLYAEA 133
Query: 263 GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAG 322
+ L DV+ +VLDE HY++D RGTVWEE II+ P VQ++ LSATVANA +L
Sbjct: 134 D--EHDDPLTDVEAVVLDECHYMNDSQRGTVWEESIIHSPPTVQLVALSATVANAGQLTD 191
Query: 323 WIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 382
WI ++HG T L+ S RPVPL + F + L PLL++ G ++ K
Sbjct: 192 WIDKVHGPTTLVMSDHRPVPLQFSFCSAKGLHPLLNDAGTGLH------------PNCKV 239
Query: 383 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
++ +R R +F Q+++ R ML
Sbjct: 240 WRAPKGHKRKGRSQRPTQPEPPPITFVVAQMAE-----------------------RQML 276
Query: 443 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-IKGLLKG 501
P I+FIF+RRGCD AV+ L L+ + E + ++ L + P+AVR+ LL+G
Sbjct: 277 PGIYFIFSRRGCDKAVRDLGVQCLVSKQEQARIKARLTAYSNDNPEAVRDGIHADALLRG 336
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+AAHHAG LP WK IEELFQ+GLVKVVFATETLAAGINMPAR+ V++++SKRT G
Sbjct: 337 IAAHHAGVLPAWKELIEELFQQGLVKVVFATETLAAGINMPARSTVIAAMSKRTERGHRP 396
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
L +E QMAGRAGRRG+D++G+VV VQ+ +EG E +L + +PLVSQFT SYGMVL
Sbjct: 397 LMGSEFLQMAGRAGRRGLDSQGYVVTVQSRFEGVREAGQLATSPSDPLVSQFTPSYGMVL 456
Query: 622 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKE 681
NLL L +AR+LVE+SFG Y+ ++ +D L +++ +
Sbjct: 457 NLL-------------------QRHDLAKARELVERSFGRYLAGLDLVEDEDNLSQLRLQ 497
Query: 682 TDVLTSEISD 691
L D
Sbjct: 498 LSQLEGVAGD 507
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 110/192 (57%), Gaps = 8/192 (4%)
Query: 981 WKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 1039
W+ FL + +++ LD ++ I G T AA+RG+NELWL + L + L DL P L
Sbjct: 721 WETFLALMDILQHFGCLDELDPTEI---GRTVAALRGDNELWLGLALMSGHLDDLSPPDL 777
Query: 1040 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
AAV ++ +E + LW S + P + L R L QE+ GV +P +
Sbjct: 778 AAVFEAISTEVNRPDLW----SGFPPPAAAEEALQDLSGLRRELLRAQERAGVVVPAWWE 833
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVD 1159
+ G+V+AWA G +W +++ + +LD+GD+ R++RRT+DLLAQ+P + ++L+ +A
Sbjct: 834 PELMGLVDAWARGTSWSDLIANTSLDEGDVVRIMRRTVDLLAQVPYCEAISEQLRSHARQ 893
Query: 1160 ASNVMDRPPISE 1171
A ++R P++E
Sbjct: 894 ALKAINRFPVAE 905
>gi|384251766|gb|EIE25243.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 561
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 240/534 (44%), Positives = 330/534 (61%), Gaps = 44/534 (8%)
Query: 143 GNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ 202
GN + ++E+ ++ F +DKFQ S+E LRGSSVVVSAPT +GKT+IAEAA +A +A
Sbjct: 25 GNRKLTLEEITAVLPFALDKFQAQSVEILLRGSSVVVSAPTGAGKTVIAEAATIAMLARG 84
Query: 203 RRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSV 262
+R+ YTTPLKALSNQK E R FG + VGL TGD+++N ++ I++MTTE+LRN++Y++
Sbjct: 85 QRVIYTTPLKALSNQKLYEMRLRFGSDMVGLQTGDASLNLDSSIVVMTTEVLRNIMYRTD 144
Query: 263 GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAG 322
+ E L DV +IVLDEVHYL D SRG+VWEE+II CP ++Q+ +SATVANAD+L
Sbjct: 145 SRGAVER-LNDVGLIVLDEVHYLGDPSRGSVWEEVIINCPPQIQLCAMSATVANADDLGA 203
Query: 323 WIGQIHGKTELITSSRRPVPLTWYFS----TKTALLPLLDEKGKHMNRKLSLNYLQLSTS 378
WI ++HG E + + RPVPL W+F T LLPL KG+ +N L
Sbjct: 204 WIDEVHGSCETVVTRYRPVPLEWHFGFAAGGSTHLLPLFGSKGRALNSALR-------RP 256
Query: 379 EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS 438
E + Y R + + A+ N G+ L + R + + +V+ +L S
Sbjct: 257 EPEKYMGVDWGRWDHMRSANEN--------GEVTLQYDEPRWKRMAPLEEVVMSL---AS 305
Query: 439 RDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPAIK 496
+ MLPAI+FIF+R CD A L + +L E + L+ R P+AV+E +
Sbjct: 306 KAMLPAIYFIFSRAACDEAALMLDKQGVSLTTPDEQMLILYELESLRADQPEAVKENLVA 365
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L+KG A+HHAG LP WK +E LFQ+G++KVVFATETLAAGINMPAR+ ++S+LS+R
Sbjct: 366 ALVKGFASHHAGLLPGWKGIVESLFQQGVLKVVFATETLAAGINMPARSTIISTLSRRKD 425
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
G LT NEL QMAGRAGRRG D G+ V++Q+ +E E+ ++ G E L SQF
Sbjct: 426 QGIQMLTHNELLQMAGRAGRRGYDTTGNCVVLQSRFEDPEDVHGIIMRGPEALQSQFATG 485
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLA 670
YGMVLNLL RSL EAR +++SF NY+G+ ++ A
Sbjct: 486 YGMVLNLL-------------------HSRSLAEARAFIQRSFSNYLGALLLPA 520
>gi|434396648|ref|YP_007130652.1| DSH domain protein [Stanieria cyanosphaera PCC 7437]
gi|428267745|gb|AFZ33686.1| DSH domain protein [Stanieria cyanosphaera PCC 7437]
Length = 977
Score = 424 bits (1090), Expect = e-115, Method: Compositional matrix adjust.
Identities = 262/673 (38%), Positives = 358/673 (53%), Gaps = 140/673 (20%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L ++ F +D FQ+ +I A RG SVVV APT SGKTL+ E A ++ +RIFYTTPL
Sbjct: 12 LHKLFPFELDDFQKDAIAALDRGKSVVVCAPTGSGKTLVGEYAIYLALSQGKRIFYTTPL 71
Query: 212 KALSNQKFREFRETFGDNN---VGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSS 267
KALSNQKFR+F FG N VGL+TGD IN AQ+++MTTEI RNMLY++ +G V
Sbjct: 72 KALSNQKFRDFLGQFGAENEKLVGLITGDILINPNAQVVVMTTEIFRNMLYETPIGEVG- 130
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
+ L +V +VLDE HYLSD RGTVWEE IIYCP ++Q++ LSAT+ NA+E WI ++
Sbjct: 131 -TSLENVAAVVLDECHYLSDRGRGTVWEESIIYCPTQIQLVALSATIGNAEEFTDWINRV 189
Query: 328 HGKT-----------ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLS 376
T EL+ S RPVPL +YFS + L PLL+ + +N K L
Sbjct: 190 RSDTAIKTKEPVISCELVNSDFRPVPLRFYFSNRKGLFPLLNAQQTKLNPK-------LK 242
Query: 377 TSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL 436
SE + GG+ RR SKN + P +I T+ L
Sbjct: 243 ASEKTSREKGGNSRR----------------------SKN-------RECPSIIQTIQQL 273
Query: 437 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF---------RILYP 487
+++DMLPAI+ IF+RRGCD AV L++ NL+ E ++E L +F +IL
Sbjct: 274 QAKDMLPAIYIIFSRRGCDQAVNNLDNLNLVTPEEAQQIEAILLQFILSENLELQQILLQ 333
Query: 488 DAVR-EPAIKGLLKGVAA------------------------------------------ 504
+ P +K LL G A
Sbjct: 334 TLEQSNPHLKSLLWGYLAANPNAANDLWNYFANHPNEKYLLFQLLAQLSQVLRIEQIEPL 393
Query: 505 ------HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
HHAG LP+WK +E LF+ GLVK+VFAT TLAAGINMPART V+S+LSKRT G
Sbjct: 394 TRGIASHHAGLLPVWKELVERLFELGLVKIVFATATLAAGINMPARTTVISALSKRTDDG 453
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
LT +E Q+AGRAGRRG D G+VV QTP+EGA+E L + EPL S FT SYG
Sbjct: 454 HSMLTPSEFLQIAGRAGRRGKDEVGYVVTTQTPFEGAKEAAYLATSQAEPLRSWFTPSYG 513
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKI 678
MVLNLL ++ E ++L+E+SF Y+ A+ L
Sbjct: 514 MVLNLL-------------------QKHTITEIKELLERSFAEYL-------ARKRLAPE 547
Query: 679 QKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSA 738
Q+ + T+E++ ++ + +Y++ +++ LK E R L+++ E R +A
Sbjct: 548 QQAIAIYTTELTKLDVELAPIPIGQFTSYEK---IRDRLKEEHRLLDILQQQAEAVRKNA 604
Query: 739 LKDILKDFENGHL 751
+K ++ D + G +
Sbjct: 605 IKPLIPDIQPGRI 617
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 108/203 (53%), Gaps = 20/203 (9%)
Query: 981 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 1040
W EFL + V+ E +AL+ T LG+ AA IRG+NELWLA+ + L L+P QLA
Sbjct: 781 WDEFLSLIKVLQEFQALEEYTPTA--LGQAAATIRGDNELWLALAFLSGELEVLEPPQLA 838
Query: 1041 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI--------------NVLDEHRSSFLEL 1086
A +L++E + +W + + P V+ + ++L E R ++
Sbjct: 839 AAVCALITETPRGDVWCD----FPPPPEVLEALGIKKRQDANKSAKTSILREIRPHLFQV 894
Query: 1087 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 1146
Q ++GV +P + + G+ + W G+ W E+ LD+GD+ R+LRRT+D+L QIP++
Sbjct: 895 QHRYGVGLPIWREYELIGLAQQWVLGIEWNELCDSTNLDEGDIVRMLRRTLDVLWQIPQM 954
Query: 1147 PDVDQRLQKNAVDASNVMDRPPI 1169
P L NA + +M R PI
Sbjct: 955 PHASSTLVNNAQEGIAMMKRFPI 977
>gi|406981420|gb|EKE02900.1| hypothetical protein ACD_20C00317G0035 [uncultured bacterium]
Length = 773
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 246/614 (40%), Positives = 348/614 (56%), Gaps = 80/614 (13%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F++D FQ +IE G SVVV APT +GKT IAE A + +RIFYTTPLKALS
Sbjct: 13 FGFQLDDFQIEAIEHINAGKSVVVCAPTGAGKTAIAEYAVKKVLGTDKRIFYTTPLKALS 72
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLY-QSVGMVSSESGLFDV 274
NQKF +F++++G+N VGLLTGD++INR+AQI++MTTE+ RNMLY ++G + E L +V
Sbjct: 73 NQKFNDFKKSYGENKVGLLTGDTSINRDAQIVVMTTEVFRNMLYGTNLGRI--EENLRNV 130
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+VLDEVHY++D RGTVWEE IIY P +Q+I LSAT+ANAD+L WI +HG T L+
Sbjct: 131 QYVVLDEVHYMNDEQRGTVWEESIIYSPNNIQLIALSATIANADKLTEWINTVHGDTALV 190
Query: 335 TSSRRPVPLTWYF---STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
S RPVPL ++ S +LPL G+ +N K + KP +
Sbjct: 191 NSDFRPVPLKHFYYSPSKPNEILPLFAPGGR-LNSK-------IRAESPKP--------K 234
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
+RK +R + V ++++ L +DMLPAI+F F+R
Sbjct: 235 FARK-------------------------VREASVSELVEI---LHKKDMLPAIYFTFSR 266
Query: 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLP 511
+ CD + LL++ E + + + + YP + ++ + GVA+HHAG LP
Sbjct: 267 KKCDDNMIECSRLRLLNKFEEKRLLQIIDEYILDYPYLGKHKYLEYIYSGVASHHAGLLP 326
Query: 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMA 571
WK IE+LFQ GL+K VFATETLAAGINMPAR+ V+SS+SKRT G LT++E QM+
Sbjct: 327 GWKVLIEKLFQHGLIKAVFATETLAAGINMPARSTVISSISKRTDDGHRVLTASEFLQMS 386
Query: 572 GRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMH 631
GRAGRRG+D G+V +V TP++ EE L + +PL S+FT SY MVLNLL V
Sbjct: 387 GRAGRRGMDEVGYVTVVGTPFQSPEEVGILASSASDPLESKFTPSYSMVLNLLQRFTV-- 444
Query: 632 LSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTS---- 687
E+AR+L+ +SFG Y + M E +I + D L +
Sbjct: 445 -----------------EDARELILKSFGYYSSTEKMKLLIREQERINETIDELNNIKCP 487
Query: 688 -EISDDAIDRKSRRLLSEAAYKEMAN-LQEELKAEKRFRTELRRRMELKRFSALKDILKD 745
++ + + + ++ + Y+++ N L+++ K R R+ E K KDIL+
Sbjct: 488 YRLTQEDLIKYNKLKNTYIEYRKLTNILRKQAKQAGRQRSPEVIEYENK----TKDILRQ 543
Query: 746 FENGHLPFLCLQYK 759
E C QYK
Sbjct: 544 LERSKCD-QCKQYK 556
Score = 109 bits (272), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 135/257 (52%), Gaps = 28/257 (10%)
Query: 924 EQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKE 983
E +TK + + ++ + K+YK+ + + +E R + RSK++T++IE + W++
Sbjct: 534 ENKTKDILRQLERSKCDQCKQYKRHIKNLDISE----RFERRSKKVTEQIENEKDIYWRQ 589
Query: 984 FLRISNVIHETRALDINTQVIFPL--GETAAAIRGENELWLAMVLRNKILLDLKPAQLAA 1041
F+ + V+ + L I+ +P G A+IR ENEL+ A ++ + I+ L PA+LAA
Sbjct: 590 FVNLMAVLEDLEYL-IDK---YPTEKGVMTASIRSENELFFAELILSGIMDGLSPAELAA 645
Query: 1042 VCASLVSEGIKVRLW-------KNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEI 1094
V ++ +E + + + K +I E V V V Q+K+ V
Sbjct: 646 VVCAVATEEPRSQFYSRFQLGAKARKAIIEGREVVRKVWKV-----------QKKYDVNT 694
Query: 1095 PCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQ 1154
P L+ +S +VE W +G W E++ + +GDL R +RTIDLL Q+ +P+V +++
Sbjct: 695 PILLNPHYSPLVEFWTNGGEWEELIKGLEMGEGDLVRTFKRTIDLLRQLANMPNVPKQVA 754
Query: 1155 KNAVDASNVMDRPPISE 1171
+ A A ++R P+SE
Sbjct: 755 QTASIAMECINREPVSE 771
>gi|254430185|ref|ZP_05043888.1| DSHCT domain family [Cyanobium sp. PCC 7001]
gi|197624638|gb|EDY37197.1| DSHCT domain family [Cyanobium sp. PCC 7001]
Length = 849
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 218/465 (46%), Positives = 283/465 (60%), Gaps = 58/465 (12%)
Query: 203 RRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSV 262
+R+FYTTPLKALSNQK R+FR+ FG VGLLTGD ++NREAQ+++MTTEI RNMLY +
Sbjct: 5 QRVFYTTPLKALSNQKLRDFRQQFGAERVGLLTGDLSLNREAQVVVMTTEIFRNMLYAEI 64
Query: 263 GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAG 322
+ L DV+ +VLDE HY++D RGTVWEE II+CP +Q++ LSATVANA +L
Sbjct: 65 DN-PDDDPLADVEAVVLDECHYMNDSQRGTVWEESIIHCPPSIQLVALSATVANAGQLTD 123
Query: 323 WIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEV 380
WI ++HG T LI S RPVPL + F + L PLL++ G H N K+
Sbjct: 124 WIDRVHGPTRLIYSDHRPVPLDFSFCSAKGLHPLLNDAGTDLHPNCKVW----------- 172
Query: 381 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 440
G RR+ + +F QL++ RD
Sbjct: 173 --RAPKGHRRKGPKTPKPPQPEAPPLAFVIAQLAE-----------------------RD 207
Query: 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK 500
MLPAI+FIF+RRGCD V+ L +L+ E + L+ F + +AVR+ + LL+
Sbjct: 208 MLPAIYFIFSRRGCDRGVRDLGKVSLVSAEEQERIRAKLEAFTEVSSEAVRDGHAEPLLR 267
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+A+HHAG LP WK IE+LFQ+GL+KVVFATETLAAGINMPART V+S+LSKRT G
Sbjct: 268 GIASHHAGVLPAWKELIEDLFQQGLIKVVFATETLAAGINMPARTTVISALSKRTERGHR 327
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
L +E QMAGRAGRRG+D++G+VV VQ+ +EG E +L A +PL SQFT SYGMV
Sbjct: 328 PLMGSEFLQMAGRAGRRGLDSQGYVVTVQSRFEGVREAGQLALAPADPLASQFTPSYGMV 387
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665
LNLL L +AR+LVE+SFG Y+ +
Sbjct: 388 LNLL-------------------QRYDLPKARELVERSFGRYLAT 413
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 115/219 (52%), Gaps = 18/219 (8%)
Query: 956 EEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFP--LGETAAA 1013
EE+ + L RS R W F+ + V+ AL + P +G T AA
Sbjct: 639 EERQRLLHFRSNR-----------HWDTFMALIEVLRHFGAL-AGEDGLEPTDVGRTVAA 686
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
+RG+NELWL + L L L PA+LA+V ++ +E + LW + P V +
Sbjct: 687 LRGDNELWLGLALMTGHLDALTPAELASVLEAISTEVNRPDLW----CAWAPPAAVEEAL 742
Query: 1074 NVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 1133
+ L R Q+ GV P + + +G+V AWASG +W E+M + +LD+GD+ R++
Sbjct: 743 HDLRSLRREIARQQDNAGVAFPIWWEPELTGLVHAWASGTSWSEVMANTSLDEGDVVRVM 802
Query: 1134 RRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 1172
RRT+DLL+Q+P V Q+L+ +A A ++R P+ EL
Sbjct: 803 RRTVDLLSQVPYCEAVTQQLRDHARLALKSINRFPVCEL 841
>gi|159462656|ref|XP_001689558.1| DEAD/DEAH-box helicase [Chlamydomonas reinhardtii]
gi|158283546|gb|EDP09296.1| DEAD/DEAH-box helicase [Chlamydomonas reinhardtii]
Length = 485
Score = 401 bits (1031), Expect = e-108, Method: Compositional matrix adjust.
Identities = 231/517 (44%), Positives = 308/517 (59%), Gaps = 64/517 (12%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
I+ F +D FQR ++E FL+G SVVV APT +GKT IAEAAAVA +A +R+ YTTPLKAL
Sbjct: 1 IFPFPLDGFQRRALELFLQGQSVVVCAPTGAGKTAIAEAAAVAALARGQRVIYTTPLKAL 60
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV------SSE 268
SNQK E R FG GL TGD+ +N +A I++MTTEILRN++Y++ + +
Sbjct: 61 SNQKLFETRRRFGHARCGLQTGDANLNPDADIVVMTTEILRNIMYRTAELAEENNTGGNG 120
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ L +V +IVLDEVHYL D RG+VWEE+II CP+ +Q++C+SATVAN +L WI + H
Sbjct: 121 ARLGNVGLIVLDEVHYLGDPHRGSVWEEVIINCPRHIQLLCMSATVANPKDLGDWIAKEH 180
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
E I + RPVPL W+F+ A KG M L V + GS
Sbjct: 181 MPCETIQTRFRPVPLHWHFAYFKA------PKGVSMEDLL---------VPVNSARGRGS 225
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
RN K +M ++P + T+ L R+MLPAIWFI
Sbjct: 226 GDRNGDKGLNMR------------------------RIPDMHKTIKVLAEREMLPAIWFI 261
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 508
+RR CD++ L D S + + R P+AV+E + L+ G+A+HHAG
Sbjct: 262 LSRRDCDSSAARAAAVPLTDPETQSLIAAEVAALRADQPEAVKEELVPALISGIASHHAG 321
Query: 509 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 568
LP WKS +E LFQRGL+K+VFAT TLAAGINMPART V+SSLS+ T G L NEL
Sbjct: 322 QLPGWKSLVERLFQRGLLKLVFATGTLAAGINMPARTTVVSSLSRMTDDGPKLLPHNELL 381
Query: 569 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 628
QMAGRAGRRG D G+ +++Q +EGA+E +++ AG EPL SQF+ SYG+VLNLL
Sbjct: 382 QMAGRAGRRGFDTEGNCLVLQNKFEGADEAWQIIHAGPEPLTSQFSVSYGLVLNLL---- 437
Query: 629 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665
+ +LE+AR+ V +SFGN++ +
Sbjct: 438 ---------------SVNTLEQAREFVSRSFGNFLAT 459
>gi|307109951|gb|EFN58188.1| hypothetical protein CHLNCDRAFT_142028 [Chlorella variabilis]
Length = 1267
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 299/922 (32%), Positives = 433/922 (46%), Gaps = 141/922 (15%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V+++ + F++D FQ ++ L G SVVV APT +GKT IAEAA + +A +R+ YT
Sbjct: 185 VEQVLCQFAFQLDPFQVQAVAKLLAGKSVVVCAPTGAGKTAIAEAATLHYLAEGKRVIYT 244
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQ--SVGMVS 266
TPLKALSNQK E RE FG GL TGD+++N +A +++MTTEILRNMLY+ G +
Sbjct: 245 TPLKALSNQKLGEMRERFGVEGAGLQTGDASLNIDAPVVVMTTEILRNMLYRVDDDGRTA 304
Query: 267 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326
+ L DV ++VLDEVHYL D RG+VWEE+II P ++++ +SATV N ++L GWI Q
Sbjct: 305 DDR-LKDVGLVVLDEVHYLGDPGRGSVWEEVIINLPPHIKLLSMSATVRNPEDLGGWISQ 363
Query: 327 IHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY--- 383
+HG + I +S RPVPLTW+F P D+ G L L S + P
Sbjct: 364 VHGACDTIRTSFRPVPLTWHFCHAQ---PAADDAGPAPPPARLLPLLDDSRRRINPALLP 420
Query: 384 ---------KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ--VPQVIDT 432
G R + + +G+ K ++R + V V+D
Sbjct: 421 PGKRYMFEESSGTPEARRAAAGRLWKARPSPDGWGRWDGLKKGKVSLRTVEELVGAVMDD 480
Query: 433 LWH-----------------LRSRDMLPAIWFIFNRRGCDAAVQYLED------------ 463
WH L +R MLPAIWFIF+RR CD A ++LE
Sbjct: 481 DWHSLPRWKRIPSLEAVALALEARAMLPAIWFIFSRRECDLAARHLEIHGAALTSPEGKK 540
Query: 464 -----------------CNLLDECEMS----EVELALKRFRILYPDAVREPAIKGLLKGV 502
N L +++ L P+AV+ ++ LL+GV
Sbjct: 541 RRPPVPSRLAGYPAGWLANWLAAASGGISRQQIQWELDALAAEQPEAVKGGFVEALLRGV 600
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
A+HHAGCLP WK +E LFQRGL+K+VFATETLAAGINMPART ++++LS+R G L
Sbjct: 601 ASHHAGCLPAWKGLVERLFQRGLLKLVFATETLAAGINMPARTTLVAALSRRRGGGIGSL 660
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
NEL QMAGRAGRRG D G V++Q+ +E + ++ G EPL SQF+ YGMVLN
Sbjct: 661 QHNELLQMAGRAGRRGYDTTGSCVVLQSKWEDPDVAWDIIRRGPEPLRSQFSTGYGMVLN 720
Query: 623 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKET 682
LL R L EAR +++SF Y+ S + A+ L + +
Sbjct: 721 LL-------------------YTRPLAEARAFLDRSFSRYLAS---IGAQRRLAEAGR-L 757
Query: 683 DVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDI 742
+ +E+ D R +E + + LQ LK EKR LR ++ +R +A +
Sbjct: 758 EARAAEVMGDMARRAGISEQAEGLWAKYQKLQGRLKEEKRAAKLLRAQLADERAAAAELA 817
Query: 743 LKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQS 802
L+ L L L + ++ +PA+ L + SS + + + D
Sbjct: 818 LERLSLPRLVGLDLSASNLADSDYRLPALLLCNLER-GSSGVWVLEAGPD---------- 866
Query: 803 NGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLL 862
Y+ LG+DN Y + I + P A+ A L
Sbjct: 867 --------------YLCLGADNKLYQVGARHINGIAPGPHPVANDAEACAGVMRHAQALR 912
Query: 863 DKGEMLWEKLADSEFGG-LWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVEN 921
+ E+ L SE G + C EGS+ T V S L +++ + + +
Sbjct: 913 SRSELGSWSLGWSELSGDVGCAEGSVVT------ALVASKLLLPADLVPL-LPSPEGLAA 965
Query: 922 YKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGW 981
+ QR +V + K V+ +K K L R+ L +E+ S W
Sbjct: 966 LEGQRQRV-------------RAVKAQVNEIKAA--KAATLLERAAVLRTEVEEQAGSSW 1010
Query: 982 KEFLRISNVIHETRALDINTQV 1003
+ F + ++ E AL Q+
Sbjct: 1011 RAFEDLLAILQEVEALSGPPQL 1032
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 103/176 (58%), Gaps = 7/176 (3%)
Query: 1000 NTQVIF-PLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVR--LW 1056
QV F PLG A + NELW+A+VL + L L P QLA ++++S R +W
Sbjct: 1094 GGQVAFTPLGLVAREVNCANELWMALVLTHDALQALPPPQLAGALSAVISAECVSRPTVW 1153
Query: 1057 KNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWR 1116
+ Y + V + +++ R LQ +HGV+ P +D + +G+VEAWA+G +W
Sbjct: 1154 ----AAYSATEGVTAAVAAVEDARQRLAGLQVRHGVDAPISVDLRLAGLVEAWAAGCSWE 1209
Query: 1117 EMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 1172
++M DC+LDDGD+ARLL RT+DLL Q+ + L+K+A A MDR PIS+L
Sbjct: 1210 QVMQDCSLDDGDVARLLTRTVDLLRQVAHCDTLLPPLRKSARQAMAAMDRKPISDL 1265
>gi|284928620|ref|YP_003421142.1| superfamily II RNA helicase [cyanobacterium UCYN-A]
gi|284809079|gb|ADB94784.1| superfamily II RNA helicase [cyanobacterium UCYN-A]
Length = 966
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 233/591 (39%), Positives = 307/591 (51%), Gaps = 140/591 (23%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
+ +++ F++DKFQ+ SI A +G S+VV APT SGKTLI E A + ++R+FYTTPL
Sbjct: 9 IKTLFPFQLDKFQQDSINALNQGKSLVVCAPTGSGKTLIGEYAIYRALNLKQRVFYTTPL 68
Query: 212 KALSNQKFREFRETFGDNN-------VGLLTGDSAINREAQILIMTTEILRNMLYQS-VG 263
KALSNQKFR+FRE F N VGL+TGD+ +N A I+IMTTEI RNMLY++ +G
Sbjct: 69 KALSNQKFRDFREKFAIQNEKIDESMVGLITGDTVLNANASIVIMTTEIFRNMLYETLIG 128
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
V + L +V ++LDE HY+S+ SRGTVWEE IIYCP +Q++ LSAT+ N EL W
Sbjct: 129 QVG--TSLDNVATVILDECHYISNRSRGTVWEESIIYCPPNIQLVALSATIGNPGELTEW 186
Query: 324 IGQIHGK-------------TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 370
I Q+ EL+ S+ RPVPL +YFS K L PLL
Sbjct: 187 INQVRTSFPNRNSEKNLISLCELVNSNFRPVPLRFYFSQKNGLFPLL------------- 233
Query: 371 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 430
NS+K A + + + Q K+ + I+R P +
Sbjct: 234 ---------------------NSQKSA-------LNALLKSQEPKDKLKRIKREDCPDPL 265
Query: 431 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI-----L 485
+ L R +LP+I+ IF+RR CD AVQ L D NL+ E ++ L F + L
Sbjct: 266 TVVKQLYQRKLLPSIYIIFSRRECDKAVQKLHDLNLVSPEEAHALQYNLLIFFLADSPNL 325
Query: 486 YPDAVREPAIKGL---------LKGVAAH------------------------------- 505
+ +R A K L LK H
Sbjct: 326 QENLLRITASKNLALHKVLKDFLKNFNTHSLLFSYLAKNKDAKNYLFDILASLCNLVRED 385
Query: 506 ------------HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
HAG LP WK +E+LF+ GLVKVVFAT TL+AGINMPART V+S+LSK
Sbjct: 386 HLEPLTRGIAAHHAGILPAWKELVEQLFEAGLVKVVFATATLSAGINMPARTTVISALSK 445
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQF 613
RT +G LT +E Q+AGRAGRRG+D GHV++ QT +EG E L A E L S F
Sbjct: 446 RTDNGHNMLTPSEFLQIAGRAGRRGMDKVGHVIINQTVFEGPSEAAYLATAKPESLKSCF 505
Query: 614 TASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 664
T SYGMVLNLL +++E + L+E+SF Y+
Sbjct: 506 TPSYGMVLNLL-------------------QKHTIQETKNLLEKSFAEYLA 537
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 152/275 (55%), Gaps = 26/275 (9%)
Query: 914 EYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIV------DT---VKFTEEKIK---R 961
E H+ + YK + + K+ + G ++ K + DT KF EK+K +
Sbjct: 699 EVHEVMNKYKASKITSQEINKQQDKIYGIEKSLKSIFPFNEEDTKQLFKFHYEKLKLNEK 758
Query: 962 LKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELW 1021
L + ++ +R++ W+EFL + V+ + AL+ V LG+ AA+RGENELW
Sbjct: 759 LDFKQIKI-QRLQSNHLYYWQEFLNLIEVLQDLGALE--NYVPTLLGQATAALRGENELW 815
Query: 1022 LAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL--DEH 1079
L +V + IL +L LAA+ +++V+E ++ W N Y PS+ ++N+++ DE
Sbjct: 816 LGIVFMSGILDNLCSHHLAALVSAIVTETLRPDTWTN----YLPSSELLNIVSNCSKDEM 871
Query: 1080 RSSFL-----ELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLR 1134
+ + ++Q+++ + IP L+ +F G+VE WA G W+ + + +LD+GDL RLLR
Sbjct: 872 NINKIYHLLNKIQKRYQIIIPIYLEFKFIGLVEQWALGEDWKNLCKNTSLDEGDLVRLLR 931
Query: 1135 RTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
RTIDLL+QIP++P + L +NA + R P+
Sbjct: 932 RTIDLLSQIPQIPGLSDSLIRNAEKTVIQLKRFPV 966
>gi|147769115|emb|CAN76232.1| hypothetical protein VITISV_039406 [Vitis vinifera]
Length = 239
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/264 (72%), Positives = 213/264 (80%), Gaps = 25/264 (9%)
Query: 911 MSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLT 970
MS Y++AVE YKEQR KV+RLKKKIARTEGFKEYKKI+D KFTEEKIKRLKARS RL+
Sbjct: 1 MSQAYYEAVECYKEQRNKVSRLKKKIARTEGFKEYKKIIDMSKFTEEKIKRLKARSNRLS 60
Query: 971 KRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKI 1030
RIEQIEPSGWKEFL++ GE + L+MVLR+K+
Sbjct: 61 SRIEQIEPSGWKEFLQLQ------------------FGEKMNS-------GLSMVLRSKV 95
Query: 1031 LLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKH 1090
LL LKPAQLAAVC SLVSEGIKVR WKNNS IYE STTVINVI++LDE R+S L+LQEKH
Sbjct: 96 LLGLKPAQLAAVCGSLVSEGIKVRPWKNNSYIYEASTTVINVISLLDEQRNSLLQLQEKH 155
Query: 1091 GVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVD 1150
V+IPCCLDSQFSGMVEAWASGLTWRE+MMDCA+D+GDLARLLRRTID+LAQIPKLPD+D
Sbjct: 156 DVQIPCCLDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDILAQIPKLPDID 215
Query: 1151 QRLQKNAVDASNVMDRPPISELAG 1174
LQ NA+ ASNVMDRPPISELAG
Sbjct: 216 PLLQSNAMTASNVMDRPPISELAG 239
>gi|449018272|dbj|BAM81674.1| ATP-dependent RNA helicase [Cyanidioschyzon merolae strain 10D]
Length = 1214
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 260/698 (37%), Positives = 374/698 (53%), Gaps = 105/698 (15%)
Query: 130 QRVEKLCN--EVKEFGNEMIDVDE--LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSS 185
QR+ L N E K+ G+ ++D ++ L S++ F +D+FQ +I + L+ SVVVS PT S
Sbjct: 64 QRLRALANVPERKDNGS-LLDAEQEALESMFSFSLDEFQLRAIRSVLQSRSVVVSVPTGS 122
Query: 186 GKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQ 245
GKT+I EAA + R FYTTPLKALSNQKF +F + FG VGLLTGD +I +A
Sbjct: 123 GKTVIGEAALAIALKKGMRAFYTTPLKALSNQKFGDFCDRFGTEQVGLLTGDISIRPDAP 182
Query: 246 ILIMTTEILRNMLYQ----------------------------SVGMVSSESGLFDVDVI 277
IL+MTTE+ RNMLY+ S+ + L D+ V+
Sbjct: 183 ILVMTTEVYRNMLYRCRTGVLAELSVAASPVDEVLAPATEDAHSIAPLLRAGYLDDLFVV 242
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V DE HY++D RGTVWEE +I P ++ LSAT+ NA E++ W +HG T+LI ++
Sbjct: 243 VFDEFHYMNDRERGTVWEEAVIGSPTHTILVALSATMRNAAEISEWFEAVHGVTDLIVAN 302
Query: 338 RRPVPLTWYFSTKTALLPLL-------DEKGKHMNR---KLSLNYLQLSTSE----VKP- 382
RPVPL + + L PLL +KGK R + + N +L T E + P
Sbjct: 303 DRPVPLEYVYLDADGLHPLLVPLKRSSGDKGKGFGRSRQRGARNESKLPTIEGRYQMNPE 362
Query: 383 --------YKDGGSRRRNSRKHADMNSNNIVTSFG-QHQLSKNSINAIRRSQVPQVIDTL 433
K RR+ R D N N+ S + + + R VP +
Sbjct: 363 LVWNVGQESKQIAERRQRWR---DANDPNLRRSAEVLERREARRLRELYRVSVPSYPFLV 419
Query: 434 WHLRSRDMLPAIWFIFNRRGCDAAVQYL----EDCNLLDECEMSEVELALKRFRILYPDA 489
LR+R +LPAI F+F+R GCD AV + L+ + E + +E ++ F ++P+
Sbjct: 420 RCLRNRQLLPAIVFVFSRSGCDRAVSEVLRERSALKLVSKAERAMLESEMEAFFEVHPEL 479
Query: 490 VREP----AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
P + +++GVAAHHAG LP+WK+ +E+LFQ L+KVVFATETLAAGINMPAR+
Sbjct: 480 RENPDSQKRYESIMEGVAAHHAGMLPLWKALVEQLFQANLIKVVFATETLAAGINMPARS 539
Query: 546 AVLSSLSKRTASGRIQ-LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE-GAEECCKLLF 603
V+++LSKR+ S IQ LT NE QMAGRAGRRG+D G+VV++Q+ +E AE C+LL
Sbjct: 540 TVVTALSKRSRSEGIQRLTPNEFLQMAGRAGRRGMDPIGYVVVMQSAWEPSAEVACQLLQ 599
Query: 604 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 663
G + L S F SYGM LNLL G L+ AR+ +E+SFG+++
Sbjct: 600 RGADALRSNFVPSYGMALNLLR-----------------YPGTPLQSARRYLERSFGSFL 642
Query: 664 GSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSE-------AAYKEMANLQEE 716
S L +I E + L ++ +++ R+ ++ AAY + L E
Sbjct: 643 ASRGRLNQWKP--EIHDEVEALERQV------KEAHRIFAQHGGEKVVAAYDK---LLER 691
Query: 717 LKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFL 754
L+ E+R L + E S ++D+L + G + L
Sbjct: 692 LRCEERILGYLHEQHEESAVSIMEDLLVFSDPGTIVLL 729
Score = 75.1 bits (183), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 131/311 (42%), Gaps = 66/311 (21%)
Query: 912 SFEYHD---------AVENYKEQRTKVARLKKKIAR-------TEGFKEYKKIVDTVKFT 955
SF HD A + + RL++++ R TE + ++ +VD ++
Sbjct: 872 SFSLHDHPDCELVLKAYRSLGVAEAHLGRLRQRLMRQTMQATATESWNIFRALVDVLE-- 929
Query: 956 EEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIF----PLGETA 1011
R +R+E++E E + + D ++ F G
Sbjct: 930 ----------RYRCLERVEEVEDDARAESGQDVTRAAPEASDDTGSRYTFFRLTEFGSIV 979
Query: 1012 AAIRGENELW--LAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTV 1069
A +R ENELW LA++ + L L P +LAAV AS+ ++ L + PS V
Sbjct: 980 AGLRVENELWAGLALIHAEQQLAGLAPHELAAVVASIAAD---TSLPPGGYCRFLPSVRV 1036
Query: 1070 INVIN-VLDEHRSSFLELQEK-------------HG-VEIP-CCLDSQFSGMVEAWASGL 1113
+++ VL R Q++ +G + IP L +G+VEAWA
Sbjct: 1037 LDLCREVLGPLRKQLAAAQQEALETYWSPSMATLNGELMIPDVRLSYDLAGVVEAWACET 1096
Query: 1114 TWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPD-------------VDQRLQKNAVDA 1160
W ++ +LD+GD+ RLLRRTIDLL QI L V +L NA A
Sbjct: 1097 PWSTLLNGVSLDEGDIVRLLRRTIDLLRQIANLGTSSGLGWSRRVAALVSSQLVVNAKRA 1156
Query: 1161 SNVMDRPPISE 1171
++DR P+++
Sbjct: 1157 LTLIDRYPVND 1167
>gi|452822714|gb|EME29731.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 927
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 227/586 (38%), Positives = 335/586 (57%), Gaps = 62/586 (10%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F++D FQ+++IE+ R +V+V+APT SGKT+IAEAA +A +RIFYTTPLKALS
Sbjct: 14 FSFQLDDFQQAAIESLRRRENVLVAAPTGSGKTVIAEAAIYLALAAGKRIFYTTPLKALS 73
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQKFR+ + FG + VGLLTGD I R+A IL++TTEI RNMLY +S V
Sbjct: 74 NQKFRDCQRVFGVSRVGLLTGDVTIQRDADILVLTTEIYRNMLYADTTSISD-----SVF 128
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELIT 335
+V DE H+++D RGTVWEE II PKEV ++ LSAT++NA +L W+ +H KT L
Sbjct: 129 AVVFDEFHFMNDPERGTVWEEAIIASPKEVILVALSATMSNAAQLKDWLSNVHRKTSLHE 188
Query: 336 SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 395
+ RPVPL + F L LL K N +L+ L + D RRRN
Sbjct: 189 THVRPVPLHFQFCNHKGLHDLLHTSKKDENACSALSKTLLFDYKQHYQVDKNKRRRNR-- 246
Query: 396 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCD 455
+ +R Q P V + L R MLP I F+F+R GCD
Sbjct: 247 -----------------------STLRSLQSPSVGFLVRILFRRKMLPCILFVFSRAGCD 283
Query: 456 AAVQYLED---CNLLDECEMSEVELALKRFRILYPD--AVREPAIKGLLKGVAAHHAGCL 510
A + L D +L+ + E ++ + +F +P+ A +E +K L G++ HHAG L
Sbjct: 284 RAAEELGDKLRSHLVTKREQQVLQSRIFQFIDHFPEIAAQQEDRLKLLQLGISVHHAGLL 343
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
P+WK+F+EELF GL+KV+FATETLAAG+NMPART V+S+L KR +G +L+++ QM
Sbjct: 344 PVWKNFVEELFIEGLIKVIFATETLAAGMNMPARTTVISALFKRGDNGMERLSTSSFQQM 403
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 630
AGRAGRRG D++G V++Q+P + +L+ VE + S+F +YG+VLNL
Sbjct: 404 AGRAGRRGKDSQGFCVVLQSPDTHPKHVFQLVTGNVEAITSKFLPTYGLVLNL------- 456
Query: 631 HLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS 690
LQ G+S ++ + + +SFGN+ + A + + + +KE ++ +
Sbjct: 457 -----------LQDGKSPQQVKDFLGKSFGNF-----LFAYERKRQEQEKENEL---QKY 497
Query: 691 DDAIDRKSRRLLSEAAYKEMANLQEELKAEKR-FRTELRRRMELKR 735
+ A+ + + +K LQ++LK E+R R ++ +E++R
Sbjct: 498 NSAMKTLTENNIVLEEWKRYRRLQQKLKMERRTLRYLTKQWIEMQR 543
Score = 86.7 bits (213), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 6/143 (4%)
Query: 1007 LGETAAAIRGENELWLAMVL--RNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYE 1064
LG AIRGENE+WL++VL + +P L V A+++ + I+ N +E
Sbjct: 783 LGRLCVAIRGENEVWLSIVLGYLGGQVQTYEPHHLIGVVATVIGDPIREDAVIN----WE 838
Query: 1065 PSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCAL 1124
S+ + ++ L + + +Q +HG+ ++ +SG+ E WA W ++ +L
Sbjct: 839 ASSITLTLLEQLQVYYDQVVSIQNQHGIVCFTRMEPGWSGIAETWAKEANWSRLVSGTSL 898
Query: 1125 DDGDLARLLRRTIDLLAQIPKLP 1147
D+GD+ R LRR +D+L QIP+LP
Sbjct: 899 DEGDICRNLRRVLDILRQIPRLP 921
>gi|269925598|ref|YP_003322221.1| DEAD/DEAH box helicase [Thermobaculum terrenum ATCC BAA-798]
gi|269789258|gb|ACZ41399.1| DEAD/DEAH box helicase domain protein [Thermobaculum terrenum ATCC
BAA-798]
Length = 952
Score = 363 bits (933), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 210/515 (40%), Positives = 300/515 (58%), Gaps = 50/515 (9%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
S+Y F +D FQ+ +I+A+L+ SV+V+APT +GKT+IAE R+ YTTP+KA
Sbjct: 14 SLYPFELDDFQKEAIDAYLKEGSVLVAAPTGTGKTVIAEFGVHDAWLRGHRVMYTTPIKA 73
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD 273
LSNQK+R+FR +GD+ VGLLTGD N +IL+MTTE+LRNML Q+ L D
Sbjct: 74 LSNQKYRDFRARYGDD-VGLLTGDVIENSHGRILVMTTEVLRNMLLQT------PWELED 126
Query: 274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 333
V +V DEVHYLSD RGT WEE II CP+ +Q+ICLSATV+NA E+A WI ++H T+L
Sbjct: 127 VACVVFDEVHYLSDPERGTTWEEAIILCPEHIQLICLSATVSNAQEIADWISRVHRPTKL 186
Query: 334 ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 393
I R VPL++Y+ +LP D+ GK +N+KL LN GG R+
Sbjct: 187 IAHYERAVPLSYYYFIDNTILPAFDKNGK-LNKKL-LNL-------------GGEARQRF 231
Query: 394 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453
R+ +++ + S R++ P+ D + LR +DMLPAI+F+F+R+
Sbjct: 232 RRRVNLSVQESLES--------------ERTE-PKPPDIVRVLRDKDMLPAIYFLFSRKD 276
Query: 454 CDAAVQYLEDCNL---LDECEMSEVELALKRF-RILYPDAVREPAIKGLL----KGVAAH 505
C+ A + L + + E++ + F + + P+ +K +L +G+ H
Sbjct: 277 CEIAAELCRSMRLQLVTSKEQRDEIKRVIDLFSQRMLPEDRNLAQVKTVLDLARQGIGFH 336
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LPI K +EELF RGL+KVVFAT+TLA GINMPAR+ V+ +SK G L N
Sbjct: 337 HAGLLPILKQLVEELFSRGLMKVVFATDTLALGINMPARSVVIGQMSKFDGQGVRPLIPN 396
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL- 624
E QMAGRAGRRGID GHV++ + + E ++ + P+ S F Y VLNL
Sbjct: 397 EFQQMAGRAGRRGIDKIGHVIVPYSSWVSFREAMEIATGELHPVQSAFVLRYNTVLNLWD 456
Query: 625 --AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQ 657
G +V+++ +S + Q R + E + ++Q
Sbjct: 457 PPKGDRVLYVLQQS--LMQFQTNRQIRELSEEIKQ 489
Score = 47.0 bits (110), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 1069 VINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 1128
+IN+ LD+ + L + + GV+I + F GM+ AW +G + +++ + +GD
Sbjct: 821 LINLRRQLDDLETRILRAESRAGVQISQGYNPYFFGMMRAWCNGASLSQILDKVDIGEGD 880
Query: 1129 LARLLRRTIDLLAQI-----------PKLPDVDQ 1151
L +T+DL+ Q+ P LP +DQ
Sbjct: 881 LVMTFNKTLDLIRQVRDMLVQADPGSPLLPKLDQ 914
>gi|224110982|ref|XP_002315704.1| predicted protein [Populus trichocarpa]
gi|222864744|gb|EEF01875.1| predicted protein [Populus trichocarpa]
Length = 351
Score = 355 bits (911), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 180/207 (86%), Positives = 195/207 (94%)
Query: 122 SWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSA 181
+WR+E KWQRVEKLCNEVKEFGNE+ID +ELASIYDFRIDKFQR +IEAFL+GSSVVVSA
Sbjct: 126 NWRKESKWQRVEKLCNEVKEFGNEIIDANELASIYDFRIDKFQRLAIEAFLKGSSVVVSA 185
Query: 182 PTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAIN 241
PTSSGKTLIAEAAAVATVA RRIFYTTPLKALSNQKFR+FRETFGD NVGLLTGDSAIN
Sbjct: 186 PTSSGKTLIAEAAAVATVARGRRIFYTTPLKALSNQKFRDFRETFGDENVGLLTGDSAIN 245
Query: 242 REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC 301
++AQ+LIMTTEILRNMLYQS+GMVSS SGLF VDVIVLDEVH+LSDISRGTVWEEIIIYC
Sbjct: 246 KDAQVLIMTTEILRNMLYQSIGMVSSGSGLFHVDVIVLDEVHFLSDISRGTVWEEIIIYC 305
Query: 302 PKEVQIICLSATVANADELAGWIGQIH 328
PKEVQ+ICLSATV N DEL+GWI +I
Sbjct: 306 PKEVQLICLSATVKNPDELSGWIREIR 332
>gi|269836934|ref|YP_003319162.1| DEAD/DEAH box helicase [Sphaerobacter thermophilus DSM 20745]
gi|269786197|gb|ACZ38340.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
DSM 20745]
Length = 962
Score = 354 bits (909), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 208/523 (39%), Positives = 295/523 (56%), Gaps = 61/523 (11%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+++ + Y F +D FQR +IE FL G SV+V+APT +GKT++AE R+ YT
Sbjct: 11 IEQFSVFYPFTLDPFQREAIETFLAGDSVMVAAPTGTGKTVVAEFGVYEAFRRGGRVMYT 70
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKFR+ R +GDN VGLLTGD N +A I++MTTE+LRNML Q+ + +
Sbjct: 71 TPIKALSNQKFRDLRVIYGDN-VGLLTGDITENADAPIVVMTTEVLRNMLLQTPWELDA- 128
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
VD I+ DEVHY++D RGT WEE II CP+ +Q+ICLSATV+NADE+A WI + H
Sbjct: 129 -----VDCIIFDEVHYIADPERGTTWEEAIILCPEHIQLICLSATVSNADEIAQWISRTH 183
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD-GG 387
L+T R VPL+ Y+ L ++DE G+ +V + + GG
Sbjct: 184 RPIHLVTHYERAVPLSLYYFLDKKLHLVIDEHGR----------------QVADFPNTGG 227
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH----LRSRDMLP 443
RR Q+ + +++ +R Q Q W L+++DMLP
Sbjct: 228 ELRR--------------------QMMRGGLSSEQRRQAEQAEPPPWEIIRALQTQDMLP 267
Query: 444 AIWFIFNRRGCDAAVQY--LEDCNLLDECEMSE-----VELALKRFRILYPDAVREPAIK 496
AI+F+F+RR C+ Q L NL+ + ++ + VE L + R+ + + I
Sbjct: 268 AIYFLFSRRDCEDYAQRFALMRPNLVKDDKIRQEINTVVENYLSQMRLEDRELAQVQQIA 327
Query: 497 GLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
L + G+ HHAG LPI K +E LF RGL++VVFAT+TLA G+NMPAR+ V+ ++K
Sbjct: 328 SLAQLGIGFHHAGLLPILKQLVEVLFSRGLMQVVFATDTLALGVNMPARSVVIGRMTKWD 387
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 615
R LT NE QMAGRAGRRG+D RG VV+ +P+ E ++ +EP+ S F
Sbjct: 388 GRRRRPLTPNEFQQMAGRAGRRGMDERGSVVVPYSPWMSFREMLEIATGELEPVRSSFAI 447
Query: 616 SYGMVLNLL---AGAKVMHLSNESDDMKALQAGRSLEEARKLV 655
Y VLNL G +V H+ +S + Q R + E L+
Sbjct: 448 RYNTVLNLWDPPHGTRVRHMLQQS--LSQFQTARRVREIEDLI 488
>gi|399527088|ref|ZP_10766815.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
gi|398362339|gb|EJN46041.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
Length = 907
Score = 354 bits (909), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 210/544 (38%), Positives = 298/544 (54%), Gaps = 64/544 (11%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
S F D FQ +++A GSSV+V+APT +GKT++ + A + R FYTTP+KA
Sbjct: 38 STLSFTPDPFQIQALDAVEAGSSVLVAAPTGAGKTIVGQFGAYVALEQGMRAFYTTPIKA 97
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD 273
LSNQK+ E + +G +NVGL TGD+++N A +++MTTE+LRNM+Y + L D
Sbjct: 98 LSNQKYLELCDLYGADNVGLATGDTSVNSGAPVVVMTTEVLRNMIYAG-------AALDD 150
Query: 274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 333
+ V++LDEVHYL+D RG VWEE+II+ P V II LSATV+NA+E WI ++ E+
Sbjct: 151 LGVVILDEVHYLADKMRGPVWEEVIIHLPTHVAIIALSATVSNAEEFGAWIREVRSTCEI 210
Query: 334 ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 393
I S +RPVPL + + L GK +L+ V +D G R
Sbjct: 211 IVSEKRPVPLYQHMIVGEDIFDLYAPTGKG----------KLNPELVAATRDSGMR---- 256
Query: 394 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453
G+ S N +RR P + +L R +LPAI FIF+R G
Sbjct: 257 --------------GGRGSRSWNHEVRVRRESRPSTLISLDRAR---LLPAITFIFSRAG 299
Query: 454 CDAAVQYL--EDCNLLDECEMSEVELALKRFRILYP--DAV---REPAIKGLLKGVAAHH 506
C+ AV+ + L E +E+E + L P DA+ E +GL++G+AAHH
Sbjct: 300 CEDAVRQILSTRITLTTRSEAAEIESYVDEVIALLPPEDAIVLGTEAWKRGLMRGIAAHH 359
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
AG LP+ K +E LF RGLVK+V+ATETLA GINMPART V+ SL+K S + L++ E
Sbjct: 360 AGMLPLMKESVEHLFSRGLVKMVYATETLALGINMPARTVVIESLTKWNGSAHVSLSAGE 419
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
Q++GRAGRRGID GH V+ EE L PL+S FT +Y MV+NLLA
Sbjct: 420 YTQLSGRAGRRGIDTEGHAVVSHRGGVAPEEVAALASKRTYPLISAFTPTYNMVVNLLA- 478
Query: 627 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLT 686
++ +A + RK++E SF Y + ++A L +++ + D
Sbjct: 479 -------------RSTRA-----QTRKVLESSFAQYQADSAVVALASRLTELEAQRDATA 520
Query: 687 SEIS 690
++S
Sbjct: 521 EDLS 524
Score = 39.7 bits (91), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
I GE +L +AM + +L A+LA++ ++LV + +++ P+ I +
Sbjct: 749 IFGERDLVVAMSMNEGTWNELDEAELASMVSALVYDSRS----DDDAQQLAPAGVGIRLQ 804
Query: 1074 NVLDEHRSSFLELQEKHGVEIPC-C-----LDSQFSGMVEAWASGLTWREMMMDCALDDG 1127
E S L+ H VE C C LD+ AWA G T + + G
Sbjct: 805 EAWHE---SLATLERVHRVEKACGCDLTPSLDAGLMAATLAWAHGSTLATAIDATPIQAG 861
Query: 1128 DLARLLRRTIDLLAQI 1143
D R +R+ +D L QI
Sbjct: 862 DFVRWMRQVMDCLGQI 877
>gi|323360030|ref|YP_004226426.1| superfamily II RNA helicase [Microbacterium testaceum StLB037]
gi|323276401|dbj|BAJ76546.1| superfamily II RNA helicase [Microbacterium testaceum StLB037]
Length = 827
Score = 352 bits (903), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 225/602 (37%), Positives = 328/602 (54%), Gaps = 52/602 (8%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAE-AAAVATVANQRRIFYTT 209
+ A F +D FQ + A G SV+V+APT +GKT++ E A +A + + FYTT
Sbjct: 24 DFADAQSFELDDFQIAGCHALEDGRSVLVAAPTGAGKTIVGEFAIHLAMLEPGDKAFYTT 83
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSES 269
P+KALSNQKF E +E +GD+ VGLLTGD+ IN A+I++MTTE+LRNMLY +
Sbjct: 84 PIKALSNQKFHELQEVYGDDEVGLLTGDTNINASARIVVMTTEVLRNMLY------ADSP 137
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L + +V+DEVHYL+D RG VWEE+II+ P+ V+++ LSATV+NA+E W+ + G
Sbjct: 138 ALRGLRFVVMDEVHYLADRFRGAVWEEVIIHLPRSVKLVSLSATVSNAEEFGDWLDTVRG 197
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG-S 388
TE+I S RPVPL + + LLPL D++ +++ L++ Y++ +
Sbjct: 198 DTEVIVSETRPVPLEQHVLVRGDLLPLFDDRAGVATAQVNQELLRIRGGNAGGYENNRRA 257
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
+ S++HA + G + + I R P+V++ L + +LPAI+FI
Sbjct: 258 QEYRSQRHAGGPRHAHQRRGGHKPVRASQGPRIERIDRPEVVELL---QRNHLLPAIFFI 314
Query: 449 FNRRGCDAAVQYLEDCNL-LDECE--------MSEVELALKR--FRILYPDAVREPAIKG 497
F+R GCDAAVQ L N+ L + + E+ LK +L+ RE
Sbjct: 315 FSRAGCDAAVQQLRRANVRLTSADERVAIRHIVDELTFTLKDEDLAVLHFWEWRE----N 370
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
L +G+A+HHAG LP +K +EELF+R LVKVVFATETLA GINMPART VL L K
Sbjct: 371 LERGIASHHAGLLPAFKEVVEELFRRKLVKVVFATETLALGINMPARTVVLEKLEKFNGE 430
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
R+ +TS E Q+ GRAGRRGID GH V+ T + L PL S F +Y
Sbjct: 431 ARVAITSGEYTQLTGRAGRRGIDVEGHAVVQWTEGLEPQSVASLASRRTYPLNSSFRPTY 490
Query: 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCK 677
M +NL+ Q GRS AR+++E SF + ++ ++ +
Sbjct: 491 NMAVNLID-----------------QFGRS--RAREILESSFAQFQADRSVVGLARQVKE 531
Query: 678 IQKETDVLTSEISDDAIDRKS----RRLLS--EAAYKEMANLQEELKAEKRFRTE-LRRR 730
++ + ++ D D + RR LS E + A L+ E++ + + LRRR
Sbjct: 532 AEESLSGYETAMTCDRGDFREYSTIRRELSDLEKINRRDATAPRRLRDERQQQIQSLRRR 591
Query: 731 ME 732
M+
Sbjct: 592 MQ 593
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 20/215 (9%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQ---VIFPLGETAAA 1013
E+ +LK + R+ ++I+Q + + F R+ V+ + I+ V+ P G T
Sbjct: 611 ERYWKLKRSTDRIRQQIDQRTGTVARVFDRVVEVLATLEYVAIDEDGGTVLTPAGRTMRR 670
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
I GE +L +A LR ++ DL LAA+ LV E + + P +
Sbjct: 671 IYGERDLLVAESLRQRLWDDLDAPSLAALACCLVYEPRRDEAGPGERGL--PRGAFRGAL 728
Query: 1074 NVLDEHRSSFLELQEKH---GVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLA 1130
+ +L+ H G E P S + + AWA GL ++ + GD
Sbjct: 729 DATQTLWQELDDLERDHRLPGSESPA---SGLAPAMHAWAKGLPLDSVLTLADMAAGDFV 785
Query: 1131 RLLRRTIDLLAQI-----PKLPDVDQRLQKNAVDA 1160
R ++TIDLL QI PKL + + A+DA
Sbjct: 786 RWAKQTIDLLDQISLVAEPKL----AKTARTALDA 816
>gi|224002745|ref|XP_002291044.1| hypothetical protein THAPSDRAFT_262824 [Thalassiosira pseudonana
CCMP1335]
gi|220972820|gb|EED91151.1| hypothetical protein THAPSDRAFT_262824, partial [Thalassiosira
pseudonana CCMP1335]
Length = 1128
Score = 351 bits (901), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 214/530 (40%), Positives = 297/530 (56%), Gaps = 38/530 (7%)
Query: 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209
D L + F +D +Q S+ A L +V+V APT +GKT++ E A + + YTT
Sbjct: 73 DTLQPHFSFPLDSWQLSAGSALLNNQNVIVCAPTGAGKTVVGEMALRIALERDTKAIYTT 132
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE- 268
PLKALSNQKF E R+ FG + VGL TGD +I R + + IMTTE+ RNM +++ S+E
Sbjct: 133 PLKALSNQKFGEMRQVFGVDKVGLTTGDVSIRRGSDVTIMTTEVYRNMAWKA--RTSNEK 190
Query: 269 ----SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
L ++VLDE HY+ RG+ WEE +I P QI+ LSAT+ NA LA W+
Sbjct: 191 RDEYGDLTKNSIVVLDEFHYMGQKGRGSTWEECVITNPSHTQIVGLSATLPNAHRLAAWM 250
Query: 325 GQIHG-KTELI-TSSRRPVPLTWYFSTKTALLPLL-----DEKGKHMNRKLSLN-YLQLS 376
+ G KT LI +RPVPL +YF TK PL E G + L L+ LQ +
Sbjct: 251 ESVTGRKTVLIEAGGQRPVPLRYYFVTKRDFSPLFHNSLFQEIGNGLPLGLDLHPTLQKA 310
Query: 377 TSEVKPYKDGGSRRRNSRKHAD----MNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 432
D +R R+ D + + +++ Q + + + A R VP V
Sbjct: 311 AERRLASIDRRIQRIVDRETQDDYDSYSRGSPMSAREQRRAKEQMLKAELRKSVPSVAAM 370
Query: 433 LWHLRSRDMLPAIWFIFNRRGCDAAVQYL-EDCNLLDECEMSEVELALKRFRILYPD-AV 490
+ L+ D+LPAI+FIF+R GCD A Q L E+ LL + EV + F P+ A
Sbjct: 371 IGRLQDDDLLPAIFFIFSRNGCDNAAQVLCENLGLLTFVQTKEVAYRVLTFNTENPEIAF 430
Query: 491 REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
+ ++ LL GV +HHAG LP K+FIE LF+ L+KVVFATETLAAGINMPART V+ S
Sbjct: 431 SDAWVERLLLGVGSHHAGILPAHKAFIETLFRLELMKVVFATETLAAGINMPARTTVVCS 490
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 610
++KR +G L ++ L QMAGRAGRRG+D +G V+ TP+EG EE K+L ++P+V
Sbjct: 491 MAKRGDNGMDLLETSNLLQMAGRAGRRGMDTQGACVIAATPFEGPEEAIKILTDEIKPVV 550
Query: 611 SQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 660
SQF SY + +NL+ M L+ A+ +V++SFG
Sbjct: 551 SQFAPSYALAINLIERGSGM-----------------LDVAKSMVQKSFG 583
Score = 48.5 bits (114), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 24/95 (25%)
Query: 1096 CCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLP-------- 1147
C D +V AWASG +W+E++ GDL R L R +D L QI LP
Sbjct: 1000 CACD-----VVTAWASGASWKEVLEMSGSAPGDLVRTLSRALDALRQIANLPFVPARGFE 1054
Query: 1148 --DVDQRLQKNAVD---------ASNVMDRPPISE 1171
V RL+ N V A+N MDR P+ +
Sbjct: 1055 GDGVTVRLEANGVHPRIRALCRAAANDMDRYPVKD 1089
>gi|293192805|ref|ZP_06609700.1| putative ATP-dependent RNA helicase [Actinomyces odontolyticus
F0309]
gi|292820052|gb|EFF79050.1| putative ATP-dependent RNA helicase [Actinomyces odontolyticus
F0309]
Length = 922
Score = 349 bits (896), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 221/592 (37%), Positives = 315/592 (53%), Gaps = 84/592 (14%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
S F D FQ +++A GSSV+V+APT +GKT++ + A + R FYTTP+KA
Sbjct: 53 STLSFTPDPFQIQALDAVEAGSSVLVAAPTGAGKTIVGQFGAYVALEQGMRAFYTTPIKA 112
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD 273
LSNQK+ E + +G +NVGL TGD+++N A +++MTTE+LRNM+Y + + L D
Sbjct: 113 LSNQKYLELCDLYGADNVGLATGDTSVNSGAPVVVMTTEVLRNMIY-------AGASLND 165
Query: 274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 333
+ V++LDEVHYL+D RG VWEE+II+ P V II LSATV+NA+E WI ++ E+
Sbjct: 166 LGVVILDEVHYLADKMRGPVWEEVIIHLPAHVAIIALSATVSNAEEFGAWIREVRSTCEI 225
Query: 334 ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 393
I S +RPVPL + + L GK +L+ V +D G R
Sbjct: 226 IVSEKRPVPLYQHMIVGEDIFDLYAPAGKG----------KLNPELVAATRDSGMR---- 271
Query: 394 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453
G+ S N +RR P + +L R +LPAI FIF+R G
Sbjct: 272 --------------GGRGSRSWNREVRVRRESRPSTLISLDRAR---LLPAITFIFSRAG 314
Query: 454 CDAAVQYL--EDCNLLDECEMSEVELALKRFRILYP--DAV---REPAIKGLLKGVAAHH 506
C+ AV+ + L E +E+E + L P DA+ E +GL++G+AAHH
Sbjct: 315 CEDAVRQILSTRITLTTRSEAAEIESYVDEVIALLPPEDAIVLGAEAWKRGLMRGIAAHH 374
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
AG LP+ K +E LF RGLVK+V+ATETLA GINMPART V+ SL+K S + L++ E
Sbjct: 375 AGMLPLMKESVEHLFSRGLVKMVYATETLALGINMPARTVVIESLTKWNGSAHVSLSAGE 434
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
Q++GRAGRRGID GH V+ EE L PL+S FT +Y MV+NLLA
Sbjct: 435 YTQLSGRAGRRGIDTEGHAVVSHRGGVAPEEVAALASKRTYPLISAFTPTYNMVVNLLA- 493
Query: 627 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLT 686
++ +A + RK++E SF Y + ++ L +++ + D
Sbjct: 494 -------------RSTRA-----QTRKVLESSFAQYQADSAVVVLASRLTELEAQRDATA 535
Query: 687 SEISDDAIDRKSRRLLSEAAYKEMANLQEEL--------KAEKR-FRTELRR 729
++S S +E L+++L +A KR R ELRR
Sbjct: 536 EDLS-----------CSHGDVREYLTLRDQLGQAEKSGARARKREARDELRR 576
>gi|154508797|ref|ZP_02044439.1| hypothetical protein ACTODO_01306 [Actinomyces odontolyticus ATCC
17982]
gi|153798431|gb|EDN80851.1| DEAD/DEAH box helicase [Actinomyces odontolyticus ATCC 17982]
Length = 922
Score = 347 bits (891), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 222/592 (37%), Positives = 316/592 (53%), Gaps = 84/592 (14%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
S F D FQ +++A GSSV+V+APT +GKT++ + A + R FYTTP+KA
Sbjct: 53 SSLSFTPDPFQIQALDAVEAGSSVLVAAPTGAGKTIVGQFGAYVALEQGMRAFYTTPIKA 112
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD 273
LSNQK+ E + +G +NVGL TGD+++N A +++MTTE+LRNM+Y + + L D
Sbjct: 113 LSNQKYLELCDLYGADNVGLATGDTSVNSGAPVVVMTTEVLRNMIY-------AGASLSD 165
Query: 274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 333
+ V++LDEVHYL+D RG VWEE+II+ P V II LSATV+NA+E WI ++ E+
Sbjct: 166 LGVVILDEVHYLADKMRGPVWEEVIIHLPAHVAIIALSATVSNAEEFGAWIREVRSSCEI 225
Query: 334 ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 393
I S +RPVPL + + L GK LN ++ + + G R S
Sbjct: 226 IVSEKRPVPLYQHMIVGEDIFDLYAPTGKG-----KLNPELVAATRDSEMRGG----RGS 276
Query: 394 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453
R S N +RR P + +L R +LPAI FIF+R G
Sbjct: 277 R-------------------SWNREVRVRRESRPSTLISLDRAR---LLPAITFIFSRAG 314
Query: 454 CDAAVQYL--EDCNLLDECEMSEVELALKRFRILYP--DAV---REPAIKGLLKGVAAHH 506
C+ AV+ + L E +E+E + L P DA+ E +GL++G+AAHH
Sbjct: 315 CEDAVRQILSTRITLTTRSEAAEIESYVDEVIALLPPEDAIVLGAEAWKRGLMRGIAAHH 374
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
AG LP+ K +E LF RGLVK+V+ATETLA GINMPART V+ SL+K S + L++ E
Sbjct: 375 AGMLPLMKESVEHLFSRGLVKMVYATETLALGINMPARTVVIESLTKWNGSAHVSLSAGE 434
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
Q++GRAGRRGID GH V+ EE L PL+S FT +Y MV+NLLA
Sbjct: 435 YTQLSGRAGRRGIDTEGHAVVSHRGGVAPEEVAALASKRTYPLISAFTPTYNMVVNLLA- 493
Query: 627 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLT 686
++ +A + RK++E SF Y + ++A L +++ + D
Sbjct: 494 -------------RSTRA-----QTRKVLESSFAQYQADSAVVALASRLTELEAQRDATA 535
Query: 687 SEISDDAIDRKSRRLLSEAAYKEMANLQEEL--------KAEKR-FRTELRR 729
++S S +E L+++L +A KR R ELRR
Sbjct: 536 EDLS-----------CSHGDVREYLTLRDQLGQAEKSGARARKREARDELRR 576
>gi|381397258|ref|ZP_09922671.1| DEAD/DEAH box helicase domain protein [Microbacterium
laevaniformans OR221]
gi|380775575|gb|EIC08866.1| DEAD/DEAH box helicase domain protein [Microbacterium
laevaniformans OR221]
Length = 826
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 216/575 (37%), Positives = 306/575 (53%), Gaps = 57/575 (9%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAE-AAAVATVANQRRIFYTTPLKALSN 216
F +D FQ + A G SV+V+APT +GKT++ E A +A + FYTTP+KALSN
Sbjct: 29 FDLDPFQIAGCHALEDGRSVLVAAPTGAGKTIVGEFAVHLAMREPGEKAFYTTPMKALSN 88
Query: 217 QKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276
QKFRE ++ +G++ VGLLTGD+ IN A++++MTTE+LRNMLY + L +
Sbjct: 89 QKFRELQQVYGEDEVGLLTGDTNINGNARVVVMTTEVLRNMLY------ADSPALRGLRY 142
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
+V+DEVHYL+D RG VWEE+II+ P V+++ LSATV+NA+E W+ + G T +I S
Sbjct: 143 VVMDEVHYLADRFRGAVWEEVIIHLPPRVKLVSLSATVSNAEEFGDWLDTVRGDTAVIVS 202
Query: 337 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS----RRRN 392
RPVPL + + LLPL D++ +++ ++L + ++ R
Sbjct: 203 ETRPVPLEQHVLVRGDLLPLFDDRAGIATAQVNQELMRLRSVRGSTFESNRRAQDYRSHR 262
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R AD + L ++ I R PQV++ L ++LPAI+FIF+R
Sbjct: 263 HRAQADRSGAARPPKGVTRPLRSANMQRIERIDRPQVVELLARA---NLLPAIFFIFSRA 319
Query: 453 GCDAAVQYLE--DCNLLDECEMSEVELALKRFRILYPDAVREPAIKG-------LLKGVA 503
GC+ AVQ + L D E E+ + + PD + A+ G L +GVA
Sbjct: 320 GCEGAVQQVRRSGVRLTDRDERDEIRRIVDERTLTLPD--EDLAVLGFWEWRENLERGVA 377
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
AHHAG LP +K +EELFQR LVKVVFATETLA GINMPART VL L K R+ +T
Sbjct: 378 AHHAGLLPAFKEIVEELFQRKLVKVVFATETLALGINMPARTVVLEKLEKFNGEARVAIT 437
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
S E Q+ GRAGRRGID GH V+ + + L PL S F +Y M +NL
Sbjct: 438 SGEYTQLTGRAGRRGIDVEGHAVIQWSENLDPQAVAALASRRTYPLNSSFRPTYNMAVNL 497
Query: 624 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 683
+ Q GR+ AR+++E SF + ++ L + K+ +
Sbjct: 498 ID-----------------QFGRA--RAREILESSFAQFQADRAVVG----LAREVKDAE 534
Query: 684 V-LTSEISDDAIDRKSRRLLSEAAYKEMANLQEEL 717
V L + A DR + E A ++ EL
Sbjct: 535 VSLAGYAASMACDRGD--------FAEFARMRREL 561
Score = 48.9 bits (115), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
I GE +L +A LR +I DL PA L+A+ LV E + + P +
Sbjct: 670 IYGERDLLVAESLRTRIWKDLDPAGLSALACCLVYEPRRDESGPGEHGL--PRGAFRAAL 727
Query: 1074 NVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 1133
E + +L++ H + + + + + +WA G + ++ + L GD R
Sbjct: 728 TATQELWARLDDLEQDHRLPGSSPVATGLAQAMHSWARGASLDRVLQEADLAAGDFVRWT 787
Query: 1134 RRTIDLLAQIPKLPD 1148
++TIDLL Q+ + D
Sbjct: 788 KQTIDLLDQLSMVAD 802
>gi|315604192|ref|ZP_07879258.1| helicase [Actinomyces sp. oral taxon 180 str. F0310]
gi|315313898|gb|EFU61949.1| helicase [Actinomyces sp. oral taxon 180 str. F0310]
Length = 921
Score = 346 bits (887), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 211/544 (38%), Positives = 295/544 (54%), Gaps = 64/544 (11%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
S F D FQ +++A GSSV+V+APT +GKT++ + A + R FYTTP+KA
Sbjct: 52 STLSFSPDPFQIQALDAVEAGSSVLVAAPTGAGKTIVGQFGAYVALEQGMRAFYTTPIKA 111
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD 273
LSNQK+ E + FG NVGL TGD+++N A +++MTTE+ RNM+Y + L D
Sbjct: 112 LSNQKYLELCDLFGAANVGLATGDTSVNSGAPVVVMTTEVARNMIYAG-------APLRD 164
Query: 274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 333
+ V++LDEVHYL+D RG VWEE+II+ P V II LSATV+NA+E WI ++ E+
Sbjct: 165 LGVVILDEVHYLADKMRGPVWEEVIIHLPAHVAIIALSATVSNAEEFGAWIREVRSTCEI 224
Query: 334 ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 393
I S +RPVPL + + L GK +L+ V +D G R
Sbjct: 225 IVSEKRPVPLYQHMIVGEDIFDLYAPTGKG----------KLNPELVAATRDFGMR---- 270
Query: 394 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453
G+ S N +RR P TL L +LPAI FIF+R G
Sbjct: 271 --------------GGRGSRSWNREVRVRRESRP---STLISLDRGRLLPAITFIFSRAG 313
Query: 454 CDAAVQYL--EDCNLLDECEMSEVELALKRFRILYP--DAV---REPAIKGLLKGVAAHH 506
C+ AV+ + L E +E+E + L P DA+ E +GL++G+AAHH
Sbjct: 314 CEDAVRQILSTRITLTTRSEAAEIESYVDEVIALLPPEDAIILGAEAWKRGLMRGIAAHH 373
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
AG LP+ K +E LF RGLVK+V+ATETLA GINMPART V+ SL+K S + L++ E
Sbjct: 374 AGMLPLMKESVEHLFSRGLVKMVYATETLALGINMPARTVVIESLTKWNGSAHVSLSAGE 433
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
Q++GRAGRRGID GH V+ EE L PL+S FT +Y MV+NLLA
Sbjct: 434 YTQLSGRAGRRGIDTEGHAVVSHRGGVAPEEVAALASKRTYPLISAFTPTYNMVVNLLA- 492
Query: 627 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLT 686
++ +A + RK++E SF Y + ++A L +++ + D
Sbjct: 493 -------------RSTRA-----QTRKVLESSFAQYQADSAVVALASRLTELEAQRDATA 534
Query: 687 SEIS 690
++S
Sbjct: 535 EDLS 538
>gi|295395917|ref|ZP_06806102.1| DEAD/DEAH box family ATP-dependent RNA helicase [Brevibacterium
mcbrellneri ATCC 49030]
gi|294971190|gb|EFG47080.1| DEAD/DEAH box family ATP-dependent RNA helicase [Brevibacterium
mcbrellneri ATCC 49030]
Length = 894
Score = 343 bits (881), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 211/538 (39%), Positives = 286/538 (53%), Gaps = 82/538 (15%)
Query: 135 LCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAA 194
+ + EF NE+ F +D FQ + A G SV+V+APT +GKT++A+ A
Sbjct: 20 MTGPLAEFRNEL----------SFELDDFQLRACSALNDGRSVLVAAPTGAGKTIVAQFA 69
Query: 195 AVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEIL 254
V+ R+FYT P+KALSNQKF E + +G+ +VGLLTGD +I R+AQI++MTTE+L
Sbjct: 70 VKLAVSRGVRVFYTAPIKALSNQKFNELCDAYGEESVGLLTGDVSIRRDAQIMVMTTEVL 129
Query: 255 RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATV 314
RNM+Y S + L D+ +VLDEVHYL D RG VWEE+II+ P V ++ LSATV
Sbjct: 130 RNMIY-------SGTDLSDLGFVVLDEVHYLGDRFRGPVWEEVIIHLPIHVLLVSLSATV 182
Query: 315 ANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQ 374
+NA+E W+ ++ G T++I S RPVPL + T + PL +G ++N++L +
Sbjct: 183 SNAEEFGAWLAEVRGSTDVIVSEHRPVPLHNHACVGTDIFPLFAPRGYNVNKELERYVRR 242
Query: 375 LSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW 434
S G+RRR T F RR VI+ L
Sbjct: 243 FQPSP-------GNRRRG----------RYFTRF-------------RRPARSSVIEALG 272
Query: 435 HLRSRDMLPAIWFIFNRRGCDAAVQYLEDC--NLLDECEMSEVELALKRFRILYPDAVRE 492
S ++LPAI+FIF+R GCD A LE C +D E + +R L + E
Sbjct: 273 ---SANLLPAIFFIFSRNGCDDA---LEQCLAGGVDLTSTREKQEIARRLDDLSEELPAE 326
Query: 493 PA--------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 544
GL++G+ HHAG +P +K +EELF RGL++VVFATETLA GINMPAR
Sbjct: 327 DLGVLGFHNFSAGLMQGIGVHHAGLIPQFKEIVEELFVRGLLRVVFATETLALGINMPAR 386
Query: 545 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 604
T VL L+K +Q+T E Q+ GRAGRRGID GH V V P + L
Sbjct: 387 TVVLEKLTKFNGESHVQITPGEYTQLTGRAGRRGIDVEGHAVTVWNPQIELADIAALASK 446
Query: 605 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
L SQFT +Y M NLLA + E+A+K++E SF Y
Sbjct: 447 RTYALKSQFTPTYNMAANLLARM-------------------TSEDAKKVLETSFAQY 485
Score = 41.6 bits (96), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 11/187 (5%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E++ +++ LT +IE S F R+ NV+ + L ++ ++ I G
Sbjct: 692 ERVAKVEKELSSLTHQIEGRTSSIAHVFDRVCNVLVTLKFLPDDSWIL-------RRIYG 744
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E +L AM +R I L ++AA+ +SLV + + + PS + L
Sbjct: 745 ERDLLTAMSVRAGIWDRLTEPEVAALASSLVYQARR----EEAGVPRLPSKHLQKAFGEL 800
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 1136
+ + ++ + I D + AW G T M GD R ++T
Sbjct: 801 QQLWNQLFHIETDSRLPITPEPDPGMMKAIFAWTEGKTLSSAMGSAEFSAGDFVRWAKQT 860
Query: 1137 IDLLAQI 1143
+DLL Q+
Sbjct: 861 LDLLGQV 867
>gi|148272867|ref|YP_001222428.1| putative helicase [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
gi|147830797|emb|CAN01738.1| putative helicase [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
Length = 823
Score = 343 bits (881), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 232/619 (37%), Positives = 332/619 (53%), Gaps = 69/619 (11%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR---RI 205
++ AS F +D FQR++ E+ G SV+V+APT +GKT++AE A +A QR +I
Sbjct: 23 LESFASGLRFDLDPFQRAAAESLENGRSVLVAAPTGAGKTIVAEFAVY--LAMQRPSAKI 80
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
FYT P+KALSNQK+ E +G + VGLLTGD+ +N A+I++MTTE+LRNMLY +
Sbjct: 81 FYTAPMKALSNQKYAELVAEYGPDEVGLLTGDTNVNSRARIVVMTTEVLRNMLYADSDL- 139
Query: 266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325
L D+ +++DEVHYL+D RG VWEE+II+ P+ V++I LSATV+NA+E W+
Sbjct: 140 -----LRDLAFVIMDEVHYLADRFRGAVWEEVIIHLPQSVRMISLSATVSNAEEFGDWLQ 194
Query: 326 QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
+ G+T++I S RPVPL + + ++ L D G +++ ++++
Sbjct: 195 AVRGETDVIVSEERPVPLEQHVIVRHRMVDLFDSSGLAATHRVNPELVRMT--------H 246
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV--PQVIDTLWHLRSRDMLP 443
GG R + +S + G K + A R ++ P+V+ L R++LP
Sbjct: 247 GGGREAVRVRGGQGHSRGRTGAVGGS--GKRAPGAWDRGRMDRPEVVALL---EERNLLP 301
Query: 444 AIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALK-RFRILYPDAVREPA----IK 496
AI+FIF+R GCDAAV+ + L E E+ ++ R R L + + ++
Sbjct: 302 AIFFIFSRAGCDAAVKQVLRAGVRLTHAHERDEIRAVVEERCRTLRDEDLAVLGYWEWLE 361
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
GL +GVAAHHAG LP +K +EELFQR LVK VFATETLA GINMPART VL L K
Sbjct: 362 GLERGVAAHHAGMLPAFKEVVEELFQRKLVKAVFATETLALGINMPARTVVLEQLEKFNG 421
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
R+ LT E Q+ GRAGRRGID GH V+ + L PL S F +
Sbjct: 422 EARVPLTPGEYTQLTGRAGRRGIDVEGHAVIQWKDGLDPQAVASLASRRTYPLNSSFRPT 481
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVM--LAAKDE 674
Y M +NL+ Q GR E R+++E SF + + LA K
Sbjct: 482 YNMAVNLID-----------------QFGR--ERTREVLESSFAQFQADRAVVDLARK-- 520
Query: 675 LCKIQKET-----DVLTSEISDDAIDRKSRRLLSE-----AAYKEMANLQEELKAEKRFR 724
+ Q+E+ + + D RR LS+ AA +M + + +KR R
Sbjct: 521 -VRTQEESLAGYEKAMVCHLGDFREYSGLRRELSDLERATAARADMQQPGQHGERDKRQR 579
Query: 725 --TELRRRMELKRFSALKD 741
T+LRRRM+ A KD
Sbjct: 580 QLTDLRRRMKAHPCHACKD 598
Score = 41.6 bits (96), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 7/196 (3%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVI----HETRALDINTQVIFPLGETAA 1012
E+ RLK ++ L ++I + K F R++ ++ + RA D P G
Sbjct: 607 ERWWRLKRQTDALGQQIRTRTNAVAKVFDRVTELLLSLGYLKRATDGQVAPT-PNGRMLK 665
Query: 1013 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 1072
I G+ +L +A LR ++ +DL PA LAA+ ASLV + + +N+ ++ P
Sbjct: 666 RIYGDRDLLIAECLRTQVWVDLDPAALAAMAASLVYQPRRDEGDRNDRNL--PRGAFRAA 723
Query: 1073 INVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARL 1132
+ +E S +++ + + L + + WA G + ++ + L GD R
Sbjct: 724 LERTEEIWSRLDDVERERRLPTTDPLSTGLCAPMHRWARGGSLDAVLDEADLAAGDFVRW 783
Query: 1133 LRRTIDLLAQIPKLPD 1148
++TIDLL Q+ + D
Sbjct: 784 TKQTIDLLDQLSVVAD 799
>gi|311742488|ref|ZP_07716297.1| DEAD/DEAH box family ATP-dependent RNA helicase [Aeromicrobium
marinum DSM 15272]
gi|311314116|gb|EFQ84024.1| DEAD/DEAH box family ATP-dependent RNA helicase [Aeromicrobium
marinum DSM 15272]
Length = 906
Score = 343 bits (880), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 211/551 (38%), Positives = 286/551 (51%), Gaps = 78/551 (14%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E Y F +D+FQ + G V+V+APT SGKT++ E A +A R+ FYTTP
Sbjct: 22 EFRGAYPFALDQFQVDACRVVEDGHGVLVAAPTGSGKTIVGEFAVHLAIATGRKCFYTTP 81
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQKF +F E +G+ NVGLLTGD+++N EA +++MTTE+LRNMLY +
Sbjct: 82 IKALSNQKFHDFGERYGEENVGLLTGDNSVNGEAPVVVMTTEVLRNMLY------AGSRT 135
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DEVHYL+D RG VWEE+II P+ V I+ LSATV+NA+E W+ ++ G
Sbjct: 136 LDGLGFVVMDEVHYLADRFRGVVWEEVIIGLPESVAIVSLSATVSNAEEFGDWLTEVRGD 195
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLD--EKGKHMNRKL---SLNYLQLSTSEVKPYKD 385
T I RRPVPL + + PL + ++G +NR+L + QL K
Sbjct: 196 TVTIVEERRPVPLHQHVLVGRQMFPLFESADEGPRVNRQLERFAREDWQLGRMHQGRPKK 255
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
GG R R R + P ++ + L + +LPAI
Sbjct: 256 GGHRPRT------------------------------RHRTPSRVELVEKLAAEGLLPAI 285
Query: 446 WFIFNRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPD---------AVREPA 494
F+F+R GC AAVQ L D L+ E E+E + PD RE
Sbjct: 286 CFVFSRAGCSAAVQQLSDARLILTTPDERQEIEATVDAACAHLPDEDLHVLGYHEFRE-- 343
Query: 495 IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554
L +GVAAHHAG LP +K +E LF RGLV+VVFATETLA GINMPAR+ V+ LSK
Sbjct: 344 --ALGRGVAAHHAGMLPTFKECVELLFSRGLVRVVFATETLALGINMPARSVVIEKLSKW 401
Query: 555 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 614
+++ E Q+ GRAGRRGID GH V++ + L PL S F
Sbjct: 402 NGETHAEISPGEYTQLTGRAGRRGIDVEGHAVVLWQAGLDPRQVAGLASTRTYPLNSSFM 461
Query: 615 ASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDE 674
SY M +N++ Q GRS AR+L+EQSF + ++ +
Sbjct: 462 PSYNMAVNMVG-----------------QVGRST--ARQLLEQSFAQFQADRAVVGLARQ 502
Query: 675 LCKIQKETDVL 685
I+K D L
Sbjct: 503 ---IRKAEDAL 510
Score = 44.7 bits (104), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 5/173 (2%)
Query: 971 KRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKI 1030
+RIE + ++F R+ V+ L+ +T + P G+ + GE +L ++ L +
Sbjct: 707 RRIETRTNTVARQFDRVCEVLDVLGYLEGDT--VTPAGQRLQRLYGELDLVVSECLARGV 764
Query: 1031 LLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKH 1090
L+P+ LA+V + L R+ ++ S V + + E L+ +H
Sbjct: 765 WDGLEPSDLASVVSGLT---YTSRVVEDAPPPRFGSRRAREVADEMTELHGELAHLERQH 821
Query: 1091 GVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 1143
+ D F+ V W G + E++ L GD R +++ ID+LAQ+
Sbjct: 822 RLRFLRSPDFGFAEAVGRWVDGASLDEVLGLTDLAAGDFVRSMKQLIDVLAQV 874
>gi|220912683|ref|YP_002487992.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
gi|219859561|gb|ACL39903.1| DEAD/DEAH box helicase domain protein [Arthrobacter
chlorophenolicus A6]
Length = 984
Score = 343 bits (880), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 212/549 (38%), Positives = 289/549 (52%), Gaps = 72/549 (13%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
D+ DF +D FQR + + G V+V+APT +GKT++ E A + + FY
Sbjct: 48 DLGAFTQTLDFELDDFQRQACRSLEGGKGVLVAAPTGAGKTIVGEFAIYLALKRGLKAFY 107
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQKF E E +G NVGLLTGD++IN EA +++MTTE+LRNMLY +
Sbjct: 108 TTPIKALSNQKFTELGEKYGAENVGLLTGDTSINGEAPVVVMTTEVLRNMLY------AD 161
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
+ L D+ +V+DEVHYL+D RG VWEE+II+ P EVQ++ LSATV+NA+E W+ +
Sbjct: 162 SATLDDLGYVVMDEVHYLADRFRGAVWEEVIIHLPSEVQVVSLSATVSNAEEFGAWLDTV 221
Query: 328 HGKTELITSSRRPVPLTW-----------YFSTKTA---LLPLLD-------------EK 360
G T++I S RPVPL W F+ +T + P +D +
Sbjct: 222 RGDTDIIVSEHRPVPL-WQHVMVGRRIMDLFAGETTFDEIAPAVDAAEDDQPKTVSGKSR 280
Query: 361 GKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 420
K NR +N L+ + + + G R R R N+ +
Sbjct: 281 NKETNRGFDVNPELLTVARNEGQQ--GFRSRPGRVQRGRRGNDRPPRPAEQ-------TG 331
Query: 421 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK 480
+RR+ PQVI +L + D+LPAI FIF+R GCDAAV L E + +A +
Sbjct: 332 VRRASRPQVIASLDRM---DLLPAITFIFSRAGCDAAVAQCVASGLWLTTEKEQRIIAER 388
Query: 481 ---RFRILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE 533
R + PD + GLL+G AAHHAG LP +K +E+LF GLVK VFATE
Sbjct: 389 VDEAGRDIPPDDLDVLGFWSWRDGLLRGFAAHHAGMLPTFKEVVEKLFADGLVKAVFATE 448
Query: 534 TLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593
TLA G+NMPAR+ VL L K + +T+ E Q+ GRAGRRGID GH V++ P
Sbjct: 449 TLALGVNMPARSVVLEKLDKFNGEAHVDITAGEYTQLTGRAGRRGIDVEGHAVVLWQPGG 508
Query: 594 GAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARK 653
L PL S F +Y M +NLLA Q GR+ AR+
Sbjct: 509 DPTAVAGLASRRTYPLNSSFRPTYNMSINLLA-----------------QFGRA--RARE 549
Query: 654 LVEQSFGNY 662
++E SF +
Sbjct: 550 ILESSFAQF 558
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 104/219 (47%), Gaps = 18/219 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQ---VIFPLGETAAA 1013
E+ +L+ + L ++I+ + K F R+ +V+ LD + I P G+
Sbjct: 766 ERWWKLRRETDNLVRQIQGRTNTIAKTFDRVCDVLSAYGYLDASDDGRLAISPDGQRLRR 825
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSSIYEPST 1067
I GE +L ++ LR DL ++AA+ + LV + G++ R+ PS
Sbjct: 826 IYGEKDLLISQSLRLGAFDDLDAVEVAALASVLVYQAKREDRGLRPRM---------PSV 876
Query: 1068 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 1127
++ ++++ S+ +++E + + + + + WA G ++++ L G
Sbjct: 877 SLETSVDIVVREWSALEDVEEANKLPLTGEPELGLVWPIYKWARGRHLQDVLSGTDLAAG 936
Query: 1128 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
D R +++ +DLL QI K+P ++ RL + +A N++ R
Sbjct: 937 DFVRWVKQVVDLLDQIAKIPGLEPRLARLCGEAINLIRR 975
>gi|417556685|ref|ZP_12207742.1| DEAD/DEAH box helicase [Gardnerella vaginalis 315-A]
gi|333602373|gb|EGL13803.1| DEAD/DEAH box helicase [Gardnerella vaginalis 315-A]
Length = 879
Score = 342 bits (877), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 204/509 (40%), Positives = 291/509 (57%), Gaps = 67/509 (13%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ +I+A G +V+V+APT +GKT++A+ A V + FYTTP+KALSNQ
Sbjct: 58 FDLDDFQAEAIDALENGDNVLVAAPTGAGKTVVADFAVFLGVNRGVKTFYTTPIKALSNQ 117
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ +F E +G + VGLLTGD+++N EA I++MTTE+LRNMLY+ + S + +
Sbjct: 118 KYHDFCEVYGIDRVGLLTGDTSVNPEADIVVMTTEVLRNMLYERSITLKS------LGFV 171
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G+T L+
Sbjct: 172 VLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGETHLVVDE 231
Query: 338 RRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLS-TSEVKPYKDGGSRR 390
RPVPL + T+ LL L D K+ N S N++ L+ T ++ +++ RR
Sbjct: 232 HRPVPLERHVIIQKDGRTEPELLNLYDVD-KNGN---STNHVNLALTRKITQWENASLRR 287
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS--------QVPQ---VIDTLWHLRSR 439
+ S + N+ F + + SKN + +S P+ VID L +L
Sbjct: 288 KASYR-------NVNKRFSKGKFSKNKFSNSSKSNRGEVAVRHTPKRWAVIDELDYL--- 337
Query: 440 DMLPAIWFIFNRRGCDAAVQYLEDCNL------------------LDECEMSEVELALKR 481
DMLP I+FIF+R GCD AVQ + L + E ++S+ +L R
Sbjct: 338 DMLPGIYFIFSRSGCDQAVQQCLNAGLSLTSDEEMYEIRRIVDSMIAENKLSKSDLKALR 397
Query: 482 F-RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 540
F R Y L +G AAHHAG + I++ +E LF+RGL+KV+FATETLA G+N
Sbjct: 398 FERFRY----------ALEQGFAAHHAGMIAIFRHIVETLFERGLIKVIFATETLALGLN 447
Query: 541 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 600
MPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ GH VL+ P +
Sbjct: 448 MPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDFDPSKAAS 507
Query: 601 LLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
L V PL S F ++ M +NLL + V
Sbjct: 508 LSSKRVYPLHSSFVPTFNMAVNLLNNSDV 536
Score = 45.8 bits (107), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 111/291 (38%), Gaps = 59/291 (20%)
Query: 924 EQRTKVAR--LKKKIARTEGFKEYKKIVDTVKFTEE------------------------ 957
+QR K+ ++ R + FKE K +DT++ E
Sbjct: 600 DQRRKLKHTIFASEVERAKAFKELDKTIDTLRNEERNHPCAGCPDIQEHLHWGYYWAREM 659
Query: 958 -KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
++ ++K R T + + S + R+ + + AL V+ G+ +
Sbjct: 660 RELNQVKDRYNSRTGSVARCFDSICEVLCRLDYLKNTNDAL-----VLTDKGQLLRRLYN 714
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E ++ A + I +L P QL + ++LV E R P V N +
Sbjct: 715 ELDVVFAQSICEGIFNNLTPIQLLSCLSALVYES---RGPAGGEPRRYPGGLNAPVFNTV 771
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSG----------MVEAWASGLTWREMMMDCALDD 1126
+ + F+ + + CL++ M+ WA G +++ + +
Sbjct: 772 LKMKELFIRISD-------MCLNNHLDALRPLDFGAIDMIYDWAQGADLLDILQNTDITG 824
Query: 1127 GDLARLLRRTIDLLAQIPK-------LPDVDQRLQKNAVDASNVMDRPPIS 1170
GD R +R IDLL Q+ LP+VD L NA +A+ +++R ++
Sbjct: 825 GDFVRFAKRLIDLLNQLAVASEYLKILPNVDDSLAHNAYEAAKLINRGVVA 875
>gi|415705273|ref|ZP_11460544.1| helicase [Gardnerella vaginalis 75712]
gi|388051995|gb|EIK75019.1| helicase [Gardnerella vaginalis 75712]
Length = 879
Score = 342 bits (877), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 204/509 (40%), Positives = 291/509 (57%), Gaps = 67/509 (13%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ +I+A G +V+V+APT +GKT++A+ A V + FYTTP+KALSNQ
Sbjct: 58 FDLDDFQAEAIDALENGDNVLVAAPTGAGKTVVADFAVFLGVNRGVKTFYTTPIKALSNQ 117
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ +F E +G + VGLLTGD+++N EA I++MTTE+LRNMLY+ + S + +
Sbjct: 118 KYHDFCEVYGIDRVGLLTGDTSVNPEADIVVMTTEVLRNMLYERSITLKS------LGFV 171
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G+T L+
Sbjct: 172 VLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGETHLVVDE 231
Query: 338 RRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLS-TSEVKPYKDGGSRR 390
RPVPL + T+ LL L D K+ N S N++ L+ T ++ +++ RR
Sbjct: 232 HRPVPLERHVIIQKDGRTEPELLNLYDVD-KNGN---STNHVNLALTRKITQWENASLRR 287
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS--------QVPQ---VIDTLWHLRSR 439
+ S + N+ F + + SKN + +S P+ VID L +L
Sbjct: 288 KASYR-------NVNKRFSKGKFSKNKFSNSSKSNRGEVAVRHTPKRWAVIDELDYL--- 337
Query: 440 DMLPAIWFIFNRRGCDAAVQYLEDCNL------------------LDECEMSEVELALKR 481
DMLP I+FIF+R GCD AVQ + L + E ++S+ +L R
Sbjct: 338 DMLPGIYFIFSRSGCDQAVQQCLNAGLSLTSDEEMYEIRRIVDSMIAENKLSKSDLKALR 397
Query: 482 F-RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 540
F R Y L +G AAHHAG + I++ +E LF+RGL+KV+FATETLA G+N
Sbjct: 398 FERFRY----------ALEQGFAAHHAGMIAIFRHIVETLFERGLIKVIFATETLALGLN 447
Query: 541 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 600
MPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ GH VL+ P +
Sbjct: 448 MPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDFDPSKAAS 507
Query: 601 LLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
L V PL S F ++ M +NLL + V
Sbjct: 508 LSSKRVYPLHSSFVPTFNMAVNLLNNSDV 536
Score = 45.1 bits (105), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 110/291 (37%), Gaps = 59/291 (20%)
Query: 924 EQRTKVAR--LKKKIARTEGFKEYKKIVDTVKFTEE------------------------ 957
+QR K+ ++ R + FKE K +DT++ E
Sbjct: 600 DQRRKLKHTIFASEVERAKAFKELDKTIDTLRNEERNHPCAGCPDIQEHLHWGYYWAREM 659
Query: 958 -KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
++ ++K R T + + S + R+ + + AL V+ G+ +
Sbjct: 660 RELNQVKDRYNSRTGSVARCFDSICEVLCRLDYLKNTNDAL-----VLTDKGQLLRRLYN 714
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E ++ A + I +L P QL + ++LV E R P V N +
Sbjct: 715 ELDVVFAQSICEGIFNNLTPIQLLSCLSALVYES---RGPAGGEPRRYPGGLNAPVFNTV 771
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSG----------MVEAWASGLTWREMMMDCALDD 1126
+ + F+ + + CL++ M+ WA G ++ + +
Sbjct: 772 LKMKELFIRISD-------MCLNNHLDALRPLDFGAIDMIYDWAQGADLLNILQNTDITG 824
Query: 1127 GDLARLLRRTIDLLAQIPK-------LPDVDQRLQKNAVDASNVMDRPPIS 1170
GD R +R IDLL Q+ LP+VD L NA +A+ +++R ++
Sbjct: 825 GDFVRFAKRLIDLLNQLAVASEYLKILPNVDDSLAHNAYEAAKLINRGVVA 875
>gi|385801688|ref|YP_005838091.1| type III restriction enzyme, res subunit [Gardnerella vaginalis
HMP9231]
gi|333394149|gb|AEF32067.1| type III restriction enzyme, res subunit [Gardnerella vaginalis
HMP9231]
Length = 879
Score = 342 bits (877), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 204/509 (40%), Positives = 291/509 (57%), Gaps = 67/509 (13%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ +I+A G +V+V+APT +GKT++A+ A V + FYTTP+KALSNQ
Sbjct: 58 FDLDDFQAEAIDALENGDNVLVAAPTGAGKTVVADFAVFLGVNRGVKTFYTTPIKALSNQ 117
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ +F E +G + VGLLTGD+++N EA I++MTTE+LRNMLY+ + S + +
Sbjct: 118 KYHDFCEVYGIDRVGLLTGDTSVNPEADIVVMTTEVLRNMLYERSITLKS------LGFV 171
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G+T L+
Sbjct: 172 VLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGETHLVVDE 231
Query: 338 RRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLS-TSEVKPYKDGGSRR 390
RPVPL + T+ LL L D K+ N S N++ L+ T ++ +++ RR
Sbjct: 232 HRPVPLERHVIIQKDGRTEPELLNLYDVD-KNGN---STNHVNLALTRKITQWENASLRR 287
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS--------QVPQ---VIDTLWHLRSR 439
+ S + N+ F + + SKN + +S P+ VID L +L
Sbjct: 288 KASYR-------NVNKRFSKCKFSKNKFSNSSKSNRGEVAVRHTPKRWAVIDELDYL--- 337
Query: 440 DMLPAIWFIFNRRGCDAAVQYLEDCNL------------------LDECEMSEVELALKR 481
DMLP I+FIF+R GCD AVQ + L + E ++S+ +L R
Sbjct: 338 DMLPGIYFIFSRSGCDQAVQQCLNAGLSLTSDEEMYEIRRIVDSMIAENKLSKSDLKALR 397
Query: 482 F-RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGIN 540
F R Y L +G AAHHAG + I++ +E LF+RGL+KV+FATETLA G+N
Sbjct: 398 FERFRY----------ALEQGFAAHHAGMIAIFRHIVETLFERGLIKVIFATETLALGLN 447
Query: 541 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 600
MPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ GH VL+ P +
Sbjct: 448 MPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDFDPSKAAS 507
Query: 601 LLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
L V PL S F ++ M +NLL + V
Sbjct: 508 LSSKRVYPLHSSFVPTFNMAVNLLNNSDV 536
Score = 45.8 bits (107), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 111/291 (38%), Gaps = 59/291 (20%)
Query: 924 EQRTKVAR--LKKKIARTEGFKEYKKIVDTVKFTEE------------------------ 957
+QR K+ ++ R + FKE K +DT++ E
Sbjct: 600 DQRRKLKHTIFASEVERAKAFKELDKTIDTLRNEERNHPCAGCPDIQEHLHWGYYWAREM 659
Query: 958 -KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
++ ++K R T + + S + R+ + + AL V+ G+ +
Sbjct: 660 RELNQVKDRYNSRTGSVARCFDSICEVLCRLDYLKNTNDAL-----VLTDKGQLLRRLYN 714
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E ++ A + I +L P QL + ++LV E R P V N +
Sbjct: 715 ELDVVFAQSICEGIFNNLTPIQLLSCLSALVYES---RGPAGGEPRRYPGGLNAPVFNTV 771
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSG----------MVEAWASGLTWREMMMDCALDD 1126
+ + F+ + + CL++ M+ WA G +++ + +
Sbjct: 772 LKMKELFIRISD-------MCLNNHLDALRPLDFGAIDMIYDWAQGADLLDILQNTDITG 824
Query: 1127 GDLARLLRRTIDLLAQIPK-------LPDVDQRLQKNAVDASNVMDRPPIS 1170
GD R +R IDLL Q+ LP+VD L NA +A+ +++R ++
Sbjct: 825 GDFVRFAKRLIDLLNQLAVASEYLKILPNVDDSLAHNAYEAAKLINRGVVA 875
>gi|396584518|ref|ZP_10484977.1| DEAD/DEAH box helicase [Actinomyces sp. ICM47]
gi|395547799|gb|EJG15195.1| DEAD/DEAH box helicase [Actinomyces sp. ICM47]
Length = 921
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 208/549 (37%), Positives = 295/549 (53%), Gaps = 72/549 (13%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F D FQ +++A G+SV+V+APT +GKT++ + A + R FYTTP+KALSNQ
Sbjct: 56 FTPDPFQLDALDAIEAGNSVLVAAPTGAGKTIVGQFGAYVALQRGMRAFYTTPIKALSNQ 115
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ E + +G +NVGL TGD++IN +A +++MTTE+ RNM+Y + L D+ V+
Sbjct: 116 KYLELCDLYGADNVGLATGDTSINSKAPVVVMTTEVCRNMIYAG-------ASLDDLGVV 168
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
VLDEVHYL+D RG VWEE+II+ P V II LSATV+NA+E WI ++ E+I S
Sbjct: 169 VLDEVHYLADKMRGPVWEEVIIHLPAHVSIIALSATVSNAEEFGAWIREVRSSCEIIVSE 228
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
+RPVPL + + L GK RKL+ V D G R
Sbjct: 229 QRPVPLYQHMIVGEDIFDLYAPTGK---RKLNPEL-------VAATNDSGMR-------- 270
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAA 457
G+ S N +RR P TL L +LPAI FIF+R GC+ A
Sbjct: 271 ----------GGRGSRSWNRPVRVRRESRPS---TLISLDRAHLLPAITFIFSRAGCEDA 317
Query: 458 VQ--YLEDCNLLDECEMSEVE---------LALKRFRILYPDAVREPAIKGLLKGVAAHH 506
V+ L L E +E+E +A + +L DA + +GL++G+AAHH
Sbjct: 318 VRQVLLTRITLTTRSEAAEIERYVDEVIALIAPEDAVVLGVDAWK----RGLMRGIAAHH 373
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
AG LP+ K +E LF +GLVK+V+ATETLA GINMPART V+ SL+K S + L++ E
Sbjct: 374 AGMLPLMKEAVEHLFSQGLVKMVYATETLALGINMPARTVVIESLTKWNGSAHVSLSAGE 433
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
Q++GRAGRRGID GH V+ EE L PL+S FT +Y MV+NLLA
Sbjct: 434 FTQLSGRAGRRGIDTEGHAVVSHRGGVAPEEVAALASKRTYPLISAFTPTYNMVVNLLAR 493
Query: 627 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLT 686
+ + + RK++E SF + + ++ L +++ +
Sbjct: 494 S-------------------TRTQTRKVLESSFAQFQADSAVVQLATRLTELEARQHAIA 534
Query: 687 SEISDDAID 695
+++ A D
Sbjct: 535 DDLTCSAGD 543
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 15/181 (8%)
Query: 969 LTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRN 1028
L + I+ S F R+ V+ LD + + GE I GE +L +AM L
Sbjct: 720 LRRSIDSQTGSVAAHFDRVCAVLERLGFLDGDR--VTASGERLRRIFGERDLVIAMSLNE 777
Query: 1029 KILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQE 1088
DL A+LA++ ++LV + ++++ P+ I + +E S L
Sbjct: 778 GAWNDLDEAELASMVSALVYDSRS----DDDANELAPTGVGIRLRTAWEE---SLGTLAR 830
Query: 1089 KHGVEIPC-C-----LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 1142
H VE C C LD+ AWA G T + + GD R +R+ +D L Q
Sbjct: 831 VHRVEKQCGCDPTPSLDAGLMSATLAWAHGSTLATAIDGTDIQAGDFVRWMRQVMDCLGQ 890
Query: 1143 I 1143
I
Sbjct: 891 I 891
>gi|415702258|ref|ZP_11458480.1| helicase [Gardnerella vaginalis 284V]
gi|388053587|gb|EIK76567.1| helicase [Gardnerella vaginalis 284V]
Length = 883
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 205/515 (39%), Positives = 293/515 (56%), Gaps = 75/515 (14%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ +I+A G +V+V+APT +GKT++A+ A V + FYTTP+KALSNQ
Sbjct: 58 FDLDDFQAEAIDALENGDNVLVAAPTGAGKTVVADFAVFLGVNRGVKTFYTTPIKALSNQ 117
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ +F E +G + VGLLTGD+++N EA I++MTTE+LRNMLY+ + S + +
Sbjct: 118 KYHDFCEVYGIDRVGLLTGDTSVNPEADIVVMTTEVLRNMLYERSITLKS------LGFV 171
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G+T L+
Sbjct: 172 VLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGETHLVVDE 231
Query: 338 RRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLS-TSEVKPYKDGGSRR 390
RPVPL + T+ LL L D K+ N S N++ L+ T ++ +++ RR
Sbjct: 232 HRPVPLERHVIIQKDGRTEPELLNLYDVD-KNGN---STNHVNLALTRKITQWENASLRR 287
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSIN--------------AIRRSQVPQ---VIDTL 433
+ S + N+ F + + SKN + A+R + P+ VID L
Sbjct: 288 KASYR-------NVNKRFSKGKFSKNKFSNRYDNSSKSNRGEVAVRHT--PKRWAVIDEL 338
Query: 434 WHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL------------------LDECEMSEV 475
+L DMLP I+FIF+R GCD AVQ + L + E ++S+
Sbjct: 339 DYL---DMLPGIYFIFSRSGCDQAVQQCLNAGLSLTSDEEMYEIRRIVDSMIAENKLSKS 395
Query: 476 ELALKRF-RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 534
+L RF R Y L +G AAHHAG + I++ +E LF+RGL+KV+FATET
Sbjct: 396 DLKALRFERFRY----------ALEQGFAAHHAGMIAIFRHIVEALFERGLIKVIFATET 445
Query: 535 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 594
LA G+NMPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ GH VL+ P
Sbjct: 446 LALGLNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDFD 505
Query: 595 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
+ L V PL S F ++ M +NLL + V
Sbjct: 506 PSKAASLSSKRVYPLHSSFVPTFNMAVNLLNNSDV 540
Score = 45.8 bits (107), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 111/291 (38%), Gaps = 59/291 (20%)
Query: 924 EQRTKVAR--LKKKIARTEGFKEYKKIVDTVKFTEE------------------------ 957
+QR K+ ++ R + FKE K +DT++ E
Sbjct: 604 DQRRKLKHTIFASEVERAKAFKELDKTIDTLRNEERNHPCAGCPDIQEHLHWGYYWAREM 663
Query: 958 -KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
++ ++K R T + + S + R+ + + AL V+ G+ +
Sbjct: 664 RELNQVKDRYNSRTGSVARCFDSICEVLCRLDYLKNTNDAL-----VLTDKGQLLRRLYN 718
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E ++ A + I +L P QL + ++LV E R P V N +
Sbjct: 719 ELDVVFAQSICEGIFNNLTPIQLLSCLSALVYES---RGPAGGEPRRYPGGLNAPVFNTV 775
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSG----------MVEAWASGLTWREMMMDCALDD 1126
+ + F+ + + CL++ M+ WA G +++ + +
Sbjct: 776 LKMKELFIRISD-------MCLNNHLDALRPLDFGAIDMIYDWAQGADLLDILQNTDITG 828
Query: 1127 GDLARLLRRTIDLLAQIPK-------LPDVDQRLQKNAVDASNVMDRPPIS 1170
GD R +R IDLL Q+ LP+VD L NA +A+ +++R ++
Sbjct: 829 GDFVRFAKRLIDLLNQLAVASEYLKILPNVDDSLAHNAYEAAKLINRGVVA 879
>gi|308235031|ref|ZP_07665768.1| DEAD/DEAH box helicase [Gardnerella vaginalis ATCC 14018 = JCM
11026]
gi|311114706|ref|YP_003985927.1| helicase [Gardnerella vaginalis ATCC 14019]
gi|310946200|gb|ADP38904.1| helicase [Gardnerella vaginalis ATCC 14019]
Length = 883
Score = 340 bits (872), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 205/515 (39%), Positives = 293/515 (56%), Gaps = 75/515 (14%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ +I+A G +V+V+APT +GKT++A+ A V + FYTTP+KALSNQ
Sbjct: 58 FDLDDFQAEAIDALENGDNVLVAAPTGAGKTVVADFAVFLGVNRGVKTFYTTPIKALSNQ 117
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ +F E +G + VGLLTGD+++N EA I++MTTE+LRNMLY+ + S + +
Sbjct: 118 KYHDFCEVYGIDRVGLLTGDTSVNPEADIVVMTTEVLRNMLYERSITLKS------LGFV 171
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G+T L+
Sbjct: 172 VLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGETHLVVDE 231
Query: 338 RRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLS-TSEVKPYKDGGSRR 390
RPVPL + T+ LL L D K+ N S N++ L+ T ++ +++ RR
Sbjct: 232 HRPVPLERHVIIQKDGRTEPELLNLYDVD-KNGN---STNHVNLALTRKITQWENASLRR 287
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSIN--------------AIRRSQVPQ---VIDTL 433
+ S + N+ F + + SKN + A+R + P+ VID L
Sbjct: 288 KASYR-------NVNKRFSKGKFSKNKFSNRYDNSSKSNRGEVAVRHT--PKRWAVIDEL 338
Query: 434 WHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL------------------LDECEMSEV 475
+L DMLP I+FIF+R GCD AVQ + L + E ++S+
Sbjct: 339 DYL---DMLPGIYFIFSRSGCDQAVQQCLNAGLSLTSDEEMYEIRRIVDSMIAENKLSKS 395
Query: 476 ELALKRF-RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 534
+L RF R Y L +G AAHHAG + I++ +E LF+RGL+KV+FATET
Sbjct: 396 DLKALRFERFRY----------ALEQGFAAHHAGMIAIFRHIVEALFERGLIKVIFATET 445
Query: 535 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 594
LA G+NMPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ GH VL+ P
Sbjct: 446 LALGLNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDFD 505
Query: 595 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
+ L V PL S F ++ M +NLL + V
Sbjct: 506 PSKAASLSSKRVYPLHSSFVPTFNMAVNLLNNSDV 540
Score = 45.8 bits (107), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 111/291 (38%), Gaps = 59/291 (20%)
Query: 924 EQRTKVAR--LKKKIARTEGFKEYKKIVDTVKFTEE------------------------ 957
+QR K+ ++ R + FKE K +DT++ E
Sbjct: 604 DQRRKLKHTIFASEVERAKAFKELDKTIDTLRNEERNHPCAGCPDIQEHLHWGYYWAREM 663
Query: 958 -KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
++ ++K R T + + S + R+ + + AL V+ G+ +
Sbjct: 664 RELNQVKDRYNSRTGSVARCFDSICEVLCRLDYLKNTNDAL-----VLTDKGQLLRRLYN 718
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E ++ A + I +L P QL + ++LV E R P V N +
Sbjct: 719 ELDVVFAQSICEGIFNNLTPIQLLSCLSALVYES---RGPAGGEPRRYPGGLNAPVFNTV 775
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSG----------MVEAWASGLTWREMMMDCALDD 1126
+ + F+ + + CL++ M+ WA G +++ + +
Sbjct: 776 LKMKELFIRISD-------MCLNNHLDALRPLDFGAIDMIYDWAQGADLLDILQNTDITG 828
Query: 1127 GDLARLLRRTIDLLAQIPK-------LPDVDQRLQKNAVDASNVMDRPPIS 1170
GD R +R IDLL Q+ LP+VD L NA +A+ +++R ++
Sbjct: 829 GDFVRFAKRLIDLLNQLAVASEYLKILPNVDDSLAHNAYEAAKLINRGVVA 879
>gi|415707209|ref|ZP_11462056.1| helicase [Gardnerella vaginalis 0288E]
gi|388054209|gb|EIK77154.1| helicase [Gardnerella vaginalis 0288E]
Length = 883
Score = 340 bits (872), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 205/515 (39%), Positives = 293/515 (56%), Gaps = 75/515 (14%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ +I+A G +V+V+APT +GKT++A+ A V + FYTTP+KALSNQ
Sbjct: 58 FDLDDFQAEAIDALENGDNVLVAAPTGAGKTVVADFAVFLGVNRGVKTFYTTPIKALSNQ 117
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ +F E +G + VGLLTGD+++N EA I++MTTE+LRNMLY+ + S + +
Sbjct: 118 KYHDFCEVYGIDRVGLLTGDTSVNPEADIVVMTTEVLRNMLYERSITLKS------LGFV 171
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G+T L+
Sbjct: 172 VLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGETHLVVDE 231
Query: 338 RRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLS-TSEVKPYKDGGSRR 390
RPVPL + T+ LL L D K+ N S N++ L+ T ++ +++ RR
Sbjct: 232 HRPVPLERHVIIQKDGRTEPELLNLYDVD-KNGN---STNHVNLALTRKITQWENASLRR 287
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSIN--------------AIRRSQVPQ---VIDTL 433
+ S + N+ F + + SKN + A+R + P+ VID L
Sbjct: 288 KASYR-------NVNKRFSKGKFSKNKFSNRYDNSSKSNRGEVAVRHT--PKRWAVIDEL 338
Query: 434 WHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL------------------LDECEMSEV 475
+L DMLP I+FIF+R GCD AVQ + L + E ++S+
Sbjct: 339 DYL---DMLPGIYFIFSRSGCDQAVQQCLNAGLSLTSDEEMYEIRRIVDSMIAENKLSKS 395
Query: 476 ELALKRF-RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 534
+L RF R Y L +G AAHHAG + I++ +E LF+RGL+KV+FATET
Sbjct: 396 DLKALRFERFRY----------ALEQGFAAHHAGMIAIFRHIVETLFERGLIKVIFATET 445
Query: 535 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 594
LA G+NMPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ GH VL+ P
Sbjct: 446 LALGLNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDFD 505
Query: 595 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
+ L V PL S F ++ M +NLL + V
Sbjct: 506 PSKAASLSSKRVYPLHSSFVPTFNMAVNLLNNSDV 540
Score = 45.8 bits (107), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 111/291 (38%), Gaps = 59/291 (20%)
Query: 924 EQRTKVAR--LKKKIARTEGFKEYKKIVDTVKFTEE------------------------ 957
+QR K+ ++ R + FKE K +DT++ E
Sbjct: 604 DQRRKLKHTIFASEVERAKAFKELDKTIDTLRNEERNHPCAGCPDIQEHLHWGYYWAREM 663
Query: 958 -KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
++ ++K R T + + S + R+ + + AL V+ G+ +
Sbjct: 664 RELNQVKDRYNSRTGSVARCFDSICEVLCRLDYLKNTNDAL-----VLTDKGQLLRRLYN 718
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E ++ A + I +L P QL + ++LV E R P V N +
Sbjct: 719 ELDVVFAQSICEGIFNNLTPIQLLSCLSALVYES---RGPAGGEPRRYPGGLNAPVFNTV 775
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSG----------MVEAWASGLTWREMMMDCALDD 1126
+ + F+ + + CL++ M+ WA G +++ + +
Sbjct: 776 LKMKELFIRISD-------MCLNNHLDALRPLDFGAIDMIYDWAQGADLLDILQNTDITG 828
Query: 1127 GDLARLLRRTIDLLAQIPK-------LPDVDQRLQKNAVDASNVMDRPPIS 1170
GD R +R IDLL Q+ LP+VD L NA +A+ +++R ++
Sbjct: 829 GDFVRFAKRLIDLLNQLAVASEYLKILPNVDDSLAHNAYEAAKLINRGVVA 879
>gi|163840768|ref|YP_001625173.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
gi|162954244|gb|ABY23759.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
Length = 954
Score = 339 bits (870), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 225/650 (34%), Positives = 331/650 (50%), Gaps = 89/650 (13%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+DF +D+FQ + A G V+V+APT +GKT++ E A ++ + FYTTP+KALS
Sbjct: 42 FDFPLDQFQTDACTALESGRGVLVAAPTGAGKTIVGEFAVYLALSRGLKAFYTTPIKALS 101
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+ E +G +VGLLTGDS+IN EA I++MTTE+LRNMLY + L D+
Sbjct: 102 NQKYSELSAKYGTADVGLLTGDSSINPEASIVVMTTEVLRNMLY------AGSEALDDLA 155
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELIT 335
+++DEVHYL+D RG VWEE+II+ P EVQ++ LSATV+NA+E W+ + G T++I
Sbjct: 156 FVIMDEVHYLADRFRGAVWEEVIIHLPSEVQVVSLSATVSNAEEFGAWLDTVRGSTDIIV 215
Query: 336 SSRRPVPLTWY----------FSTKTAL----------LPLLDEKGKHMNRKLSLNYLQL 375
S RPVPL + F+ T+ +P ++ + + R S N L+
Sbjct: 216 SEHRPVPLWQHVMVGKDIVDLFAGDTSFDQLAVVDKNEVPAVNTELLQLARTESENRLRG 275
Query: 376 STSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH 435
S + K G ++ N+RK++ + ++ A R+QV +D
Sbjct: 276 RFSHGRGRKQSGGKQWNNRKNS-----------ARQDAPQSPGKAASRAQVILALDRA-- 322
Query: 436 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA- 494
D+LPAI+FIF+R CDAAV+ D L+ E E+ R + D +
Sbjct: 323 ----DLLPAIYFIFSRAVCDAAVRQCVDAGLMLTTEAERQEIT-ARIGMASEDIPSDDLD 377
Query: 495 -------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
G+L+GVAAHHAG LP +K +E LF GLV+ VFATETLA G+NMPAR+ V
Sbjct: 378 VLGFWSWRDGMLRGVAAHHAGMLPTFKEVVESLFADGLVRAVFATETLALGVNMPARSVV 437
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
L L K + +++ E Q+ GRAGRRGID GH V++ P L
Sbjct: 438 LEKLEKFNGEAHVNVSAGEYTQLTGRAGRRGIDIEGHAVVLWQPGTDPGAVAGLALRRTY 497
Query: 608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY----- 662
PL S F +Y M +NL+A Q GRS A +++E SF +
Sbjct: 498 PLNSSFRPTYNMSINLIA-----------------QFGRS--RAHEILESSFAQFQADRS 538
Query: 663 -VGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEK 721
VG +++++E + D +T + D A + RR LS+ E A +++ +A +
Sbjct: 539 VVGLARQVSSREE--ALAGYQDSMTCHLGDFAEYSRLRRELSDV---ETAASKQQNRARR 593
Query: 722 RFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAV 771
E L R A D++ + G +P + + V P V
Sbjct: 594 GIVDE-----SLARLRA-GDVI-EISAGRMPGFAVVLNNDTQVHEPRPTV 636
Score = 48.1 bits (113), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 21/162 (12%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSS 1061
G+ I GE +L +A+ +R L DL +LAA ++LV + G++ R+
Sbjct: 790 GQRLRRIYGEKDLLIALCIREGALADLDAVELAAFASALVYQAKREERGLRPRM------ 843
Query: 1062 IYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEA---WASGLTWREM 1118
PS ++ I+++ + S+ LE QE ++P + + G+V WA G +
Sbjct: 844 ---PSPSIDAAIDIVVQQWSA-LEDQESQS-KLPLTSEPEL-GLVWPMFKWARGRHLEAV 897
Query: 1119 MMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDA 1160
+ L GD R ++ IDLL Q+ +P + ++ N V A
Sbjct: 898 LEGTDLAAGDFFRWTKQVIDLLDQLASVPGLPIEIRSNCVAA 939
>gi|415716479|ref|ZP_11466471.1| helicase [Gardnerella vaginalis 1400E]
gi|388057096|gb|EIK79929.1| helicase [Gardnerella vaginalis 1400E]
Length = 883
Score = 339 bits (870), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 202/505 (40%), Positives = 287/505 (56%), Gaps = 55/505 (10%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ +I+A G +V+V+APT +GKT++A+ A V + FYTTP+KALSNQ
Sbjct: 58 FDLDDFQVEAIDALENGDNVLVAAPTGAGKTVVADFAVFLGVNRGVKTFYTTPIKALSNQ 117
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ +F E +G + VGLLTGD+++N EA I++MTTE+LRNMLY+ + S + +
Sbjct: 118 KYHDFCEVYGIDRVGLLTGDTSVNPEADIVVMTTEVLRNMLYERSITLKS------LGFV 171
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G+T L+
Sbjct: 172 VLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGETHLVVDE 231
Query: 338 RRPVPLTWYF------STKTALLPL--LDEKGK---HMNRKLSLNYLQLSTSEVKPYKDG 386
RPVPL + T+ LL L +D+ G H+N L+ Q + ++ +
Sbjct: 232 HRPVPLERHVIIQKDGRTEPELLNLYDVDKNGNSTNHVNLALTRKIAQWENASLR--RKA 289
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSRDMLP 443
R N R D S N ++ + SK++ + P+ VID L +L DMLP
Sbjct: 290 SYRNTNKRFRKDKFSKNKFSNRYDNS-SKSNRGEVAVRHTPKRWAVIDELDYL---DMLP 345
Query: 444 AIWFIFNRRGCDAAVQYLEDCNL------------------LDECEMSEVELALKRF-RI 484
I+FIF+R GCD AVQ + L + E ++S+ +L RF R
Sbjct: 346 GIYFIFSRSGCDQAVQQCLNAGLSLTSDEEMYEIRRIVDSMIAENKLSKSDLKALRFERF 405
Query: 485 LYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 544
Y L +G AAHHAG + I++ +E LF+RGL+KV+FATETLA G+NMPAR
Sbjct: 406 RY----------ALEQGFAAHHAGMIAIFRHIVETLFERGLIKVIFATETLALGLNMPAR 455
Query: 545 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 604
+ V+ L K +G + LT E Q+ GRAGRRGID+ GH VL+ P + L
Sbjct: 456 SVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDFDPSKAASLSSK 515
Query: 605 GVEPLVSQFTASYGMVLNLLAGAKV 629
V PL S F ++ M +NLL + V
Sbjct: 516 RVYPLHSSFVPTFNMAVNLLNNSDV 540
Score = 44.3 bits (103), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 27/180 (15%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 1067
G+ + E ++ A + I +L P QL + ++LV E R P
Sbjct: 710 GQLLRRLYNELDVVFAQSICEGIFNNLTPIQLLSCLSALVYES---RGPAGGEPRRYPGG 766
Query: 1068 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSG----------MVEAWASGLTWRE 1117
V N + + + F+ + + CL++ M+ WA G +
Sbjct: 767 LNAPVFNTVLKMKELFIRISD-------MCLNNHLDALRPLDFGAIDMIYDWAQGADLLD 819
Query: 1118 MMMDCALDDGDLARLLRRTIDLLAQIPK-------LPDVDQRLQKNAVDASNVMDRPPIS 1170
++ + + GD R +R IDLL Q+ LP+VD L NA +A+ +++R ++
Sbjct: 820 ILQNTDITGGDFVRFAKRLIDLLNQLAVASEYLKILPNVDDSLAHNAYEAAKLINRGVVA 879
>gi|415711435|ref|ZP_11464172.1| helicase [Gardnerella vaginalis 55152]
gi|388058269|gb|EIK81066.1| helicase [Gardnerella vaginalis 55152]
Length = 878
Score = 339 bits (870), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 201/501 (40%), Positives = 288/501 (57%), Gaps = 52/501 (10%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ +I+A G +V+V+APT +GKT++A+ A V + FYTTP+KALSNQ
Sbjct: 58 FDLDDFQVEAIDALENGDNVLVAAPTGAGKTVVADFAVFLGVNRGVKTFYTTPIKALSNQ 117
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ +F E +G + VGLLTGD+++N EA I++MTTE+LRNMLY+ + S + +
Sbjct: 118 KYHDFCEVYGIDRVGLLTGDTSVNPEADIVVMTTEVLRNMLYERSITLKS------LGFV 171
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G+T L+
Sbjct: 172 VLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGETHLVVDE 231
Query: 338 RRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLS-TSEVKPYKDGGSRR 390
RPVPL + T+ LL L D K+ N S N++ L+ T ++ +++ RR
Sbjct: 232 HRPVPLERHVIIQKDGRTEPELLNLYDVD-KNGN---STNHVNLALTRKITQWENASLRR 287
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSRDMLPAIWF 447
+ S ++ + S SK++ + P+ VID L +L DMLP I+F
Sbjct: 288 KASYRNTNKRFRKGKFSNKYDNSSKSNRGEVAVRHTPKRWAVIDELDYL---DMLPGIYF 344
Query: 448 IFNRRGCDAAVQYLEDCNL------------------LDECEMSEVELALKRF-RILYPD 488
IF+R GCD AVQ + L + E ++S+ +L RF R Y
Sbjct: 345 IFSRSGCDQAVQQCLNAGLSLTSDEEMYEIRRIVDSMIAENKLSKSDLKALRFERFRY-- 402
Query: 489 AVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
L +G AAHHAG + I++ +E LF+RGL+KV+FATETLA G+NMPAR+ V+
Sbjct: 403 --------ALEQGFAAHHAGMIAIFRHIVETLFERGLIKVIFATETLALGLNMPARSVVV 454
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
L K +G + LT E Q+ GRAGRRGID+ GH VL+ P + L V P
Sbjct: 455 EKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDFDPSKAASLSSKRVYP 514
Query: 609 LVSQFTASYGMVLNLLAGAKV 629
L S F ++ M +NLL + V
Sbjct: 515 LHSSFVPTFNMAVNLLNNSDV 535
Score = 45.1 bits (105), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 57/275 (20%), Positives = 104/275 (37%), Gaps = 57/275 (20%)
Query: 938 RTEGFKEYKKIVDTVKFTEE-------------------------KIKRLKARSKRLTKR 972
RT+ FKE K +DT++ E ++ ++K R T
Sbjct: 615 RTKAFKELDKTIDTLRNEERNHPCAGCPDIQGHLHWGYYWAREMRELNQVKDRYNSRTGS 674
Query: 973 IEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILL 1032
+ + S + R+ + + AL V+ G+ + E ++ A + I
Sbjct: 675 VARCFDSICEVLCRLDYLKNTNDAL-----VLTDKGQLLRRLYNELDVVFAQSICEGIFN 729
Query: 1033 DLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGV 1092
+L P QL + ++LV E R P V N + + F+ + +
Sbjct: 730 NLTPIQLLSCLSALVYES---RGPVGGEPRRYPGGLNAPVFNTVLRMKELFIRISD---- 782
Query: 1093 EIPCCLDSQFSG----------MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 1142
CL++ M+ WA G +++ + + GD R +R IDLL Q
Sbjct: 783 ---MCLNNHLDALRPLDFGAIDMIYDWAQGADLLDILQNTDITGGDFVRFAKRLIDLLNQ 839
Query: 1143 IPK-------LPDVDQRLQKNAVDASNVMDRPPIS 1170
+ LP+VD L NA +A+ +++R ++
Sbjct: 840 LAVASEYLKILPNVDDSLAHNAYEAAKLINRGVVA 874
>gi|415724577|ref|ZP_11469955.1| helicase [Gardnerella vaginalis 00703C2mash]
gi|388062373|gb|EIK84990.1| helicase [Gardnerella vaginalis 00703C2mash]
Length = 860
Score = 339 bits (869), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 207/498 (41%), Positives = 290/498 (58%), Gaps = 51/498 (10%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ +I+A G +V+V+APT +GKT++A+ A V + FYTTP+KALSNQ
Sbjct: 35 FDLDDFQLEAIDALENGDNVLVAAPTGAGKTVVADFAVFLGVNRGVKTFYTTPIKALSNQ 94
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ +F E +G N VGLLTGD+++N EA I++MTTE+LRNMLY+ ++S + +
Sbjct: 95 KYHDFCEVYGSNKVGLLTGDTSVNSEADIVVMTTEVLRNMLYERSITLNS------LGFV 148
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G T LI
Sbjct: 149 VLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGNTHLIVDE 208
Query: 338 RRPVPLTWYF------STKTALLPLLD--EKGKHMNR-KLSLNY---------LQLSTSE 379
RPVPL + T+ LL L D + G NR L+L L+ +S
Sbjct: 209 HRPVPLERHVIIQKDGQTEPELLNLYDTDKNGNATNRVNLALTRKLSQWENAALRKKSSY 268
Query: 380 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHL 436
+ K R + RK D +S+ L KNS +++ P+ VID L +L
Sbjct: 269 LSKDKRFSKGRFSKRKSRDRSSD----------LQKNSKSSLTVRHTPKRWAVIDELDYL 318
Query: 437 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL---DECEMSE----VELALKRFRILYPD- 488
+MLP I+FIF+R GCD AVQ + L DE EM E V+ + + ++ D
Sbjct: 319 ---NMLPGIYFIFSRSGCDQAVQQCLNAGLALTSDE-EMYEIRRIVDSMISQNKLSKSDL 374
Query: 489 -AVREPAIK-GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
A+R + L +G AAHHAG + I++ +E LF+RGL+K++FATETLA G+NMPAR+
Sbjct: 375 KALRFERFRYALEQGFAAHHAGMIAIFRHIVETLFERGLIKIIFATETLALGLNMPARSV 434
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606
V+ L K +G + LT E Q+ GRAGRRGID+ GH VL+ P + L V
Sbjct: 435 VVEKLVKYDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDFDPAKAASLSSKRV 494
Query: 607 EPLVSQFTASYGMVLNLL 624
PL S F ++ M +NLL
Sbjct: 495 YPLHSSFVPTFNMAVNLL 512
Score = 44.3 bits (103), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 26/224 (11%)
Query: 968 RLTKRIEQIEP-------SGWKEFLRISNVIHETRALD--INTQVIFPLGETAAAIRGEN 1018
R TK + Q++ S + F RI NV+ L NT + G+ + E
Sbjct: 638 RETKELNQVKERYNSRTGSVARCFDRICNVLCSLDYLKETGNTFALTNKGQLLRRLYNEL 697
Query: 1019 ELWLAMVLRNKILLDLKPAQLAAVCASLVSE-----GIKVRLWKNNSSIYEPSTTVINVI 1073
++ A + I DL P +L + +SLV E G + R + V N +
Sbjct: 698 DVVFAQAICEGIFNDLTPIELLSCVSSLVYESRGPVGSEPRRYPGG-----LDGAVFNTV 752
Query: 1074 NVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 1133
+ L E + + ++ LD ++ WA G +++ + + GD R
Sbjct: 753 SRLKELFMRISNMCLNNHLDALKSLDFGAVDLIYDWAQGADLLDILQNTDITGGDFVRFA 812
Query: 1134 RRTIDLLAQIPK-------LPDVDQRLQKNAVDASNVMDRPPIS 1170
+R IDLL Q+ LP+VD L A +A +++R ++
Sbjct: 813 KRLIDLLNQLAVLSDYLRILPNVDDSLAHKAYEAVQIINRGVVA 856
>gi|415721039|ref|ZP_11468283.1| helicase [Gardnerella vaginalis 00703Bmash]
gi|388061300|gb|EIK83957.1| helicase [Gardnerella vaginalis 00703Bmash]
Length = 860
Score = 339 bits (869), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 207/498 (41%), Positives = 290/498 (58%), Gaps = 51/498 (10%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ +I+A G +V+V+APT +GKT++A+ A V + FYTTP+KALSNQ
Sbjct: 35 FDLDDFQLEAIDALENGDNVLVAAPTGAGKTVVADFAVFLGVNRGVKTFYTTPIKALSNQ 94
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ +F E +G N VGLLTGD+++N EA I++MTTE+LRNMLY+ ++S + +
Sbjct: 95 KYHDFCEVYGSNKVGLLTGDTSVNSEADIVVMTTEVLRNMLYERSITLNS------LGFV 148
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
VLDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G T LI
Sbjct: 149 VLDEVHYLADKFRGAVWEEVIIHLPQSVKIIGLSATVSNVEDFSAWISSVRGNTHLIVDE 208
Query: 338 RRPVPLTWYF------STKTALLPLLD--EKGKHMNR-KLSLNY---------LQLSTSE 379
RPVPL + T+ LL L D + G NR L+L L+ +S
Sbjct: 209 HRPVPLERHVIIQKDGQTEPELLNLYDSDKNGNPTNRVNLALTRKLSQWENAALRKKSSY 268
Query: 380 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHL 436
+ K R + RK D +S+ L KNS +++ P+ VID L +L
Sbjct: 269 LSKDKRFSKGRFSKRKSRDRSSD----------LQKNSKSSLTVRHTPKRWAVIDELDYL 318
Query: 437 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL---DECEMSE----VELALKRFRILYPD- 488
+MLP I+FIF+R GCD AVQ + L DE EM E V+ + + ++ D
Sbjct: 319 ---NMLPGIYFIFSRSGCDQAVQQCLNAGLALTSDE-EMYEIRRIVDSMISQNKLSKSDL 374
Query: 489 -AVREPAIK-GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
A+R + L +G AAHHAG + I++ +E LF+RGL+K++FATETLA G+NMPAR+
Sbjct: 375 KALRFERFRYALEQGFAAHHAGMIAIFRHIVETLFERGLIKIIFATETLALGLNMPARSV 434
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606
V+ L K +G + LT E Q+ GRAGRRGID+ GH VL+ P + L V
Sbjct: 435 VVEKLVKYDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLIDNPDFDPAKAASLSSKRV 494
Query: 607 EPLVSQFTASYGMVLNLL 624
PL S F ++ M +NLL
Sbjct: 495 YPLHSSFVPTFNMAVNLL 512
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 26/224 (11%)
Query: 968 RLTKRIEQIEP-------SGWKEFLRISNVIHETRALD--INTQVIFPLGETAAAIRGEN 1018
R TK + Q++ S + F RI NV+ L NT + G+ + E
Sbjct: 638 RETKELNQVKERYNSRTGSVARCFDRICNVLCSLDYLKETGNTFALTNKGQLLRRLYNEL 697
Query: 1019 ELWLAMVLRNKILLDLKPAQLAAVCASLVSE-----GIKVRLWKNNSSIYEPSTTVINVI 1073
++ A + I DL P +L + +SLV E G++ R + V N +
Sbjct: 698 DVVFAQAICEGIFNDLTPIELLSCVSSLVYESRGPVGLEPRRYPGG-----LDGAVFNTV 752
Query: 1074 NVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 1133
+ L E + + ++ LD ++ WA G +++ + + GD R
Sbjct: 753 SRLKELFMRISNMCLNNHLDALKSLDFGAVDLIYDWARGADLLDILQNTDITGGDFVRFA 812
Query: 1134 RRTIDLLAQIPK-------LPDVDQRLQKNAVDASNVMDRPPIS 1170
+R IDLL Q+ LP+VD L A +A +++R ++
Sbjct: 813 KRLIDLLNQLAVLSDYLRILPNVDDSLAHKAYEAVQIINRGVVA 856
>gi|308177425|ref|YP_003916831.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
gi|307744888|emb|CBT75860.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
Re117]
Length = 927
Score = 339 bits (869), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 208/518 (40%), Positives = 280/518 (54%), Gaps = 58/518 (11%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + + G SV+V+APT +GKT++ E A + R+ FYTTP+KALSNQ
Sbjct: 31 FDLDPFQAEACQKVAEGHSVLVAAPTGAGKTVVGEYAIYQALRENRKAFYTTPIKALSNQ 90
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ E +G VGLLTGD++IN EAQI++MTTE+LRNMLY + L + +
Sbjct: 91 KYSELVNRYGAQKVGLLTGDTSINSEAQIVVMTTEVLRNMLY------ADSQTLDGLGYV 144
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
++DEVHYL+D RG VWEE+II+ P VQII LSATV+NA+E GW+ + G+T++I S
Sbjct: 145 IMDEVHYLADKFRGAVWEEVIIHLPSNVQIISLSATVSNAEEFGGWLDTVRGQTDIIVSE 204
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQL--STSEVKPYKDGGSRRRNSRK 395
RPVPL + ++ L E ++ + + S + V P R NS
Sbjct: 205 HRPVPLFQHVMVGPNVVDLFAED-------VAFDKVAEDDSKASVNPELRKLVRTHNSGG 257
Query: 396 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCD 455
+ + IN P VI L +LPAI+FIF+R+GCD
Sbjct: 258 RVQRGRGRGGRGPQRSAGMGHRINR------PSVIG---KLDRAGLLPAIFFIFSRKGCD 308
Query: 456 AAVQY--LEDCNLLDECEMSEVELALKR--FRILYPD-------AVREPAIKGLLKGVAA 504
AVQ + D L E +E+ AL FRI D + R+ GL++G A+
Sbjct: 309 MAVQQCAMADLRLTTNEEAAEIAQALDEVAFRIPSEDLDVLEFWSWRD----GLVRGFAS 364
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HHAG LPI+K +E+LF R L+KVVFATETLA G+NMPAR+ VL L K +Q++S
Sbjct: 365 HHAGLLPIFKEIVEDLFARNLIKVVFATETLALGVNMPARSVVLEKLVKFNGESHVQISS 424
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E Q+ GRAGRRGID GH ++V P E L PL S F +Y M NLL
Sbjct: 425 GEYTQLTGRAGRRGIDVEGHSIVVWNPDLEPEALAGLASKRTYPLNSSFRPTYNMSTNLL 484
Query: 625 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
A Q GR E+ R+++E SF Y
Sbjct: 485 A-----------------QFGR--EQTRQILESSFAQY 503
>gi|392416895|ref|YP_006453500.1| superfamily II RNA helicase [Mycobacterium chubuense NBB4]
gi|390616671|gb|AFM17821.1| superfamily II RNA helicase [Mycobacterium chubuense NBB4]
Length = 946
Score = 338 bits (868), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 226/621 (36%), Positives = 321/621 (51%), Gaps = 80/621 (12%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
DV A + F +D FQR + EA RG V+V APT +GKT++ E A +A R+ FY
Sbjct: 14 DVVAFADLLSFALDDFQRRACEALARGHGVLVCAPTGAGKTVVGEFAVHLALAAGRKCFY 73
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK + +G +GLLTGD AIN +A +++MTTE+LRNMLY +
Sbjct: 74 TTPIKALSNQKHNDLVGRYGPKRIGLLTGDQAINGDADVVVMTTEVLRNMLY------AD 127
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
L + +V+DEVH+L+D RG VWEE+I++ P +V+++ LSATV+NA+E GWI +
Sbjct: 128 SRALQGLSYVVMDEVHFLADRMRGAVWEEVILHLPDDVRLVSLSATVSNAEEFGGWIQTV 187
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKG---KHMNRKLSLNYLQLSTSEVKPYK 384
G T ++ RPVPL + L+ L D + + R L ++ L
Sbjct: 188 RGDTTVVVDEHRPVPLWQHVMVGKRLMDLFDYRASGPRKGGRDLLVDPELLRHI------ 241
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
+ RR + + AD G+ + ++ S+ + P D + L+ D+LPA
Sbjct: 242 ---AHRREADRLADWQPR------GRGRTNRPSL-----FRTPSRADVISVLQQGDLLPA 287
Query: 445 IWFIFNRRGCDAAVQYLEDCNL---LDECEMSEVELALKRFRILY-PDAV-------REP 493
I FIF+R GCDAAV+ +L DE E+ +R L D V RE
Sbjct: 288 ITFIFSRAGCDAAVKQCLRSSLRLTTDEERARIAEIVDRRTADLNDADLVVLDFHQWRE- 346
Query: 494 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART VL L K
Sbjct: 347 ---GLLRGLAAHHAGMLPTFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVK 403
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA---EECCKLLFAGVEPLV 610
+ LT E Q+ GRAGRRGID GH V++ TP++ E L PL
Sbjct: 404 FNGEQHLPLTPGEYTQLTGRAGRRGIDVEGHAVVLWTPHDSTTDPAEVAGLASTRTFPLR 463
Query: 611 SQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLA 670
S F +Y M +NL+ Q G E+AR+L+E+SF Y ++
Sbjct: 464 SSFAPTYNMTINLVH-----------------QMG--PEQARRLLERSFAQYQADRSVVG 504
Query: 671 AKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRR 730
L + + + L E++D+ R +AA + L+ ++ +R ++ R
Sbjct: 505 ----LVRAVERGERLLGELADELGGR-------DAAILDYTRLRAKISERERAQSRASR- 552
Query: 731 MELKRFSALKDILKDFENGHL 751
L+R A D L G +
Sbjct: 553 --LQRRQAANDALTALRRGDI 571
>gi|399523711|ref|ZP_10764320.1| DEAD/DEAH box helicase [Atopobium sp. ICM58]
gi|398375256|gb|EJN52691.1| DEAD/DEAH box helicase [Atopobium sp. ICM58]
Length = 920
Score = 338 bits (868), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 199/479 (41%), Positives = 268/479 (55%), Gaps = 53/479 (11%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F D FQ +++A G+SV+V+APT +GKT++ + A V R FYTTP+KALSNQ
Sbjct: 56 FTPDPFQFDALDAVEAGNSVLVAAPTGAGKTIVGQFGAFVAVQRGMRAFYTTPIKALSNQ 115
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ E E +G +NVGL TGD++IN +A +++MTTE+ RNM+Y + L D+ V+
Sbjct: 116 KYLELCELYGADNVGLATGDTSINSKAPVVVMTTEVCRNMIYAG-------APLEDLGVV 168
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
VLDEVHYL+D RG VWEE+II+ P V II LSATV+NA+E WI ++ E+I S
Sbjct: 169 VLDEVHYLADKMRGPVWEEVIIHLPAHVAIIALSATVSNAEEFGAWIREVRSSCEIIVSE 228
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
+RPVPL + + L GK +L+ V D G R
Sbjct: 229 KRPVPLYQHMIVGEEIFDLYAPTGKG----------KLNPELVAATGDSGMR-------- 270
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAA 457
G+ S N +RR P TL L +LPAI FIF+R GC+ A
Sbjct: 271 ----------GGRGSRSWNRSPRVRRESRP---STLISLDRAHLLPAITFIFSRAGCEDA 317
Query: 458 VQ--YLEDCNLLDECEMSEVE---------LALKRFRILYPDAVREPAIKGLLKGVAAHH 506
V+ L L E + +E +A + +L DA + +GL++G+AAHH
Sbjct: 318 VRQVLLTRITLTTRSEAAAIERYVDEVIALIAPEDAVVLGVDAWK----RGLMRGIAAHH 373
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
AG LP+ K +E LF GLVK+V+ATETLA GINMPART V+ SL+K S + L++ E
Sbjct: 374 AGMLPLMKETVEHLFSEGLVKMVYATETLALGINMPARTVVIESLTKWNGSAHVSLSAGE 433
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
Q++GRAGRRGID GH V+ EE L PL+S FT +Y MV+NLLA
Sbjct: 434 YTQLSGRAGRRGIDTEGHAVVSHRGGVAPEEVAALASKRTYPLISAFTPTYNMVVNLLA 492
Score = 45.1 bits (105), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 16/197 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIE-------PSGWKEFLRISNVIHETRALDINTQVIFPLGE 1009
E+ R AR R+ + IEQ+ S +F R+ V+ LD + + G+
Sbjct: 700 EEHARAGARWARMGREIEQLRRSIDSQTGSVAAQFDRVCAVLERLGFLDGDR--VTASGQ 757
Query: 1010 TAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTV 1069
I GE +L +AM L DL A+LA++ ++LV + + ++ P+
Sbjct: 758 RLRRIFGERDLVVAMSLNEGTWNDLDEAELASIVSALVYDSRS----DDEANELTPTGVG 813
Query: 1070 INVINVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD 1126
I + +E + + +++ G E LD+ AWA G T + +
Sbjct: 814 IRLRTAWEECVGTLARVHRVEKQCGCEPTPSLDAGLMSSTLAWAHGSTLATAIDGAEIQA 873
Query: 1127 GDLARLLRRTIDLLAQI 1143
GD R +R+ +D L QI
Sbjct: 874 GDFVRWMRQVMDCLGQI 890
>gi|365827302|ref|ZP_09369166.1| hypothetical protein HMPREF0975_00949 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365265308|gb|EHM95081.1| hypothetical protein HMPREF0975_00949 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 982
Score = 338 bits (867), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 200/512 (39%), Positives = 279/512 (54%), Gaps = 46/512 (8%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
++ A YDF +D FQ + A RG V+V+APT +GKT++ E A +A + FY
Sbjct: 21 ELARFARGYDFPLDPFQEEACAAVERGEGVLVAAPTGAGKTVVGEFAVHLGLARGHKAFY 80
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK+ + G+ +VGLLTGD+++N A +++MTTE+LRNMLY
Sbjct: 81 TTPIKALSNQKYLDLVARHGEEHVGLLTGDTSVNPHADVVVMTTEVLRNMLY-------- 132
Query: 268 ESGLFDVD---VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
SG D+D +V+DEVHYL+D RG VWEE+II+ P EVQ+I LSATV+NA+E W+
Sbjct: 133 -SGSRDLDRLGFVVMDEVHYLADRFRGPVWEEVIIHLPAEVQVISLSATVSNAEEFGDWL 191
Query: 325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLL------------------DEKGKHMNR 366
GQ+ G+T ++ S +RPVPLT + LLPL ++ +
Sbjct: 192 GQVRGRTAVVVSEKRPVPLTQHMMVGRRLLPLYSRPIDVAELTGAAGTAESEQSEQAAQP 251
Query: 367 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVT---SFGQHQLSKNSINAIR- 422
L+ L+ + GGS + + R ++ S G + + R
Sbjct: 252 PLNPELLKAVKQARRAAASGGSSKNSYRSRGGGSARGPQPWKRSAGGARAPRRGEGGART 311
Query: 423 -RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELAL 479
R + P + + L + +LPAI F+F+R GC+ AV + +L E E + + +
Sbjct: 312 ARLKPPSRLQVVKALEAARLLPAIVFVFSRAGCEQAVNQVVSTGVDLTTEAEAARIREVI 371
Query: 480 KRFRILYPDAVREPAIKG-------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 532
+R P + + G L +GVAAHHAG LP++K +EELF GLVKVV+AT
Sbjct: 372 ERRTADIPAG--DLGVLGFRFWAHALERGVAAHHAGLLPVFKETVEELFSAGLVKVVYAT 429
Query: 533 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592
ETLA GINMPART VL SL K S + L+ E Q+ GRAGRRGID GH V++ T
Sbjct: 430 ETLALGINMPARTVVLESLRKWNGSAHVTLSPGEYTQLTGRAGRRGIDIEGHAVVLATDD 489
Query: 593 EGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
L PLVS F +Y M +NLL
Sbjct: 490 LEPATVSSLASRRTYPLVSAFRPTYNMAVNLL 521
>gi|323450920|gb|EGB06799.1| hypothetical protein AURANDRAFT_28826, partial [Aureococcus
anophagefferens]
Length = 536
Score = 338 bits (867), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 203/522 (38%), Positives = 288/522 (55%), Gaps = 68/522 (13%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
+ + F +D FQR ++ + +V+VSAPT SGKT+ E A ++ +R+FYTTPLK
Sbjct: 70 GACFPFPLDAFQRDALRSLRADRNVIVSAPTGSGKTVAGELAIAYALSVGKRVFYTTPLK 129
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKF +F FG VGL TGDS + R+A +++MTTE+ RNM+Y G
Sbjct: 130 ALSNQKFGDFCAQFGAGRVGLSTGDSGVRRDAAVVVMTTEVFRNMIYDDEGRAEIAK--- 186
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 332
DV +V DE HY++D RGTVWEE ++ CP +I+ LSATV+NA +AGW+ IHG T+
Sbjct: 187 DVFAVVFDEFHYMNDAQRGTVWEESVVGCPATARIVALSATVSNARSVAGWMASIHGPTD 246
Query: 333 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
++ + RPVPL + F+ ++PL R L + +E P +
Sbjct: 247 VVETDFRPVPLRYEFAGGGEVVPLF--------RSADLGRHARARAEAAPAQP------R 292
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+R+ A G+ + + R ++ L +L+ RD LPAI+F+F+R+
Sbjct: 293 ARQAA-----------GKTEARRPRQIRPPRGEI------LKNLQKRDRLPAIFFVFSRK 335
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFR--------ILYPDAVREPAIKGLLKGVAA 504
GC+ +C L + E LA KR R + D+ RE + L +GVAA
Sbjct: 336 GCE---NEAANCGSLQLLNVDEETLARKRIRAWALENEDVARLDSERE-RVDLLTRGVAA 391
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HHAG LP +K+ +EELF+ GLVK FATETLAAG+N+PART V++SL KR G LT+
Sbjct: 392 HHAGLLPQYKTLVEELFRDGLVKACFATETLAAGVNLPARTTVVTSLVKRGDDGMEPLTT 451
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC---KLLFAGVEPLVSQFTASYGMVL 621
+ L QMAGRAGRRG D G VV+ + G + ++L + V P+ S+F SYG+
Sbjct: 452 SALLQMAGRAGRRGKDAAGTVVVARGRKFGDRDAGLARRVLLSDVLPIASKFAPSYGVAC 511
Query: 622 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 663
LL G LE R +VE+SFG+Y+
Sbjct: 512 ALLRGG-------------------DLERCRAVVERSFGSYL 534
>gi|119716881|ref|YP_923846.1| DSH domain-containing protein [Nocardioides sp. JS614]
gi|119537542|gb|ABL82159.1| DSH domain protein [Nocardioides sp. JS614]
Length = 936
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 208/548 (37%), Positives = 281/548 (51%), Gaps = 69/548 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+ S+YDF +D FQ +A G V+V+APT SGKT++ E A + R+ FYTTP
Sbjct: 28 DFRSLYDFPLDDFQVRGCQAIEEGRGVLVAAPTGSGKTIVGEFAIHLALETGRKAFYTTP 87
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+ + +G + VGLLTGD+ +N +A +++MTTE+LRNMLY +
Sbjct: 88 IKALSNQKYHDLVARYGPDRVGLLTGDNVVNGDAPVVVMTTEVLRNMLY------AGSRT 141
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DEVHYL+D SRG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 142 LLGLGFVVMDEVHYLADRSRGAVWEEVIIHLPESVSLVSLSATVSNAEEFGEWLATVRGD 201
Query: 331 TELITSSRRPVPLTWYFSTKTALLPL-----LDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
T I RRPVPL + LL L +D + +N L +
Sbjct: 202 TTTIVEERRPVPLYQHVMVGRRLLDLFASSDVDAAAGFVKEGAPVNDELLKVARDDWASS 261
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
RRN R G+ + + ++ RR +P D + L +LPAI
Sbjct: 262 RIKDRRNPR--------------GRSKPGQKNVGNGRRVWIPSRPDVIDRLDREGLLPAI 307
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----PA------ 494
FIF+R GCDAAV +C + V L R V E PA
Sbjct: 308 VFIFSRVGCDAAVT---------QCLNAGVRLTTPEERDTIYAYVEEACSDLPADDLHVL 358
Query: 495 -----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
+ GL +GVAAHHAG LP++K +EELF RGL KVVFATETLA GINMPART V+
Sbjct: 359 GYHDFLDGLTRGVAAHHAGMLPVFKQCVEELFVRGLCKVVFATETLALGINMPARTVVIE 418
Query: 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
L+K +T E Q+ GRAGRRG+D GH V++ P E L PL
Sbjct: 419 KLTKWNGETHADITPGEYTQLTGRAGRRGLDVEGHGVVLWQPGTNPRELAGLASTRTYPL 478
Query: 610 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVML 669
S F SY M +NL+ Q GR E +R+L+EQSF + ++
Sbjct: 479 RSSFRPSYNMAVNLVH-----------------QFGR--ERSRELLEQSFAQFQADKAVV 519
Query: 670 AAKDELCK 677
+L K
Sbjct: 520 GLARQLRK 527
Score = 43.5 bits (101), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 5/189 (2%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL--DINTQVIFPLGETAAAI 1014
E+ +L ++ L +R+EQ + ++F R+ V+ L D + G +
Sbjct: 717 ERYFKLDRDAQTLKRRVEQRTNTVARQFDRVCEVLTALGYLTGDGADAQVTERGSHLRRL 776
Query: 1015 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 1074
+ +L A +R+ + L P++LAA + LV E R + SS P V V+
Sbjct: 777 YSDMDLLAAESMRHGLWDALSPSELAAALSVLVFE---ARRPDDASSPRIPGGAVREVVG 833
Query: 1075 VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLR 1134
+ S L+ H +E D F+ + WA G ++++ L GD R ++
Sbjct: 834 EMVRLWGSLEALERDHKLEFLRQPDLGFAWVAYRWAEGDDLDDVLVVSDLAAGDFVRWMK 893
Query: 1135 RTIDLLAQI 1143
+ +DL Q+
Sbjct: 894 QLVDLAGQV 902
>gi|359777026|ref|ZP_09280322.1| putative ATP-dependent helicase [Arthrobacter globiformis NBRC
12137]
gi|359305623|dbj|GAB14151.1| putative ATP-dependent helicase [Arthrobacter globiformis NBRC
12137]
Length = 964
Score = 338 bits (866), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 208/557 (37%), Positives = 287/557 (51%), Gaps = 93/557 (16%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A F +D FQR + ++ G V+V+APT +GKT++ E A + + FYTTP+
Sbjct: 29 FARTLSFELDDFQRQACKSLQEGRGVLVAAPTGAGKTIVGEFAVYLALQRGLKAFYTTPI 88
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKF E E +GD NVGLLTGD++IN +A +++MTTE+LRNMLY + L
Sbjct: 89 KALSNQKFTELTEKYGDANVGLLTGDTSINGDAPVVVMTTEVLRNMLY------ADSDTL 142
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
FD+ +V+DEVHYL+D RG VWEE+II+ P EVQ+ LSATV+NA+E W+ + G T
Sbjct: 143 FDLGFVVMDEVHYLADRFRGAVWEEVIIHLPSEVQVASLSATVSNAEEFGAWLDTVRGDT 202
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLL------------------------------DEKG 361
++I S RPVPL + ++ L ++G
Sbjct: 203 DVIVSEHRPVPLWQHVMVGRDIVDLFAGETTFDEIAPAGSPAAAAALPLAPTPADAGQRG 262
Query: 362 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 421
+N +L L LS +E + G H + + + + +A+
Sbjct: 263 FEVNPEL----LTLSRAESQLNFQG------RFGHGGRSQRRQQRQRYGDKPQQETRSAV 312
Query: 422 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR 481
RR+ PQVI + L +D+LPAI FIF+R GCDAAV +C S + L +R
Sbjct: 313 RRASRPQVIAS---LDRQDLLPAITFIFSRAGCDAAVA---------QCVASGLWLTTER 360
Query: 482 FRILYPDAVREPAI----------------KGLLKGVAAHHAGCLPIWKSFIEELFQRGL 525
+ + V E +GLL+G+AAHHAG LP +K +E+LF GL
Sbjct: 361 EQGIIAQRVDEAGQDIPTDDLEVLGFWSWREGLLRGIAAHHAGMLPTFKEVVEKLFADGL 420
Query: 526 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 585
VK VFATETLA G+NMPAR+ VL L K + +T+ E Q+ GRAGRRGID GH
Sbjct: 421 VKAVFATETLALGVNMPARSVVLEKLDKFNGEAHVDITAGEYTQLTGRAGRRGIDVEGHA 480
Query: 586 VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAG 645
V++ P L PL S F +Y M +NLLA Q G
Sbjct: 481 VVLWQPGTDPAAVAGLASRRTYPLNSSFQPTYNMSINLLA-----------------QFG 523
Query: 646 RSLEEARKLVEQSFGNY 662
R AR+++E SF +
Sbjct: 524 RP--RAREILESSFAQF 538
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 123/266 (46%), Gaps = 29/266 (10%)
Query: 913 FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKR 972
F A++N Q K+A L++ + R + D +++E K L+ + L ++
Sbjct: 707 FGLGSALQN---QEKKIADLRRAL-RAHPCHGCSEREDHARWSERWWK-LRKETDGLVRQ 761
Query: 973 IEQIEPSGWKEFLRISNVIHETRALDI---NTQVIFPLGETAAAIRGENELWLAMVLRNK 1029
I+ + K F R+ +V+ L+ I G+ I GE +L ++ LR
Sbjct: 762 IQGRTNTIAKTFDRVCDVLSAYGYLESTEDGQHRISTDGQRLRRIYGEKDLLISQALRQG 821
Query: 1030 ILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSF 1083
DL ++AA + LV + G++ R+ PS ++ ++++ S+
Sbjct: 822 AFDDLDAVEVAAFASVLVYQAKREDRGLRPRM---------PSVSLETAVDIVVREWSAL 872
Query: 1084 LELQEKHGVEIPCCLDSQFSGMV---EAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 1140
+++E++ ++P + + G++ WA G ++++ L GD R +++ IDLL
Sbjct: 873 EDVEEQN--KLPLTGEPEL-GLIWPMYKWARGRHLQDVLSGTDLAAGDFVRWVKQVIDLL 929
Query: 1141 AQIPKLPDVDQRLQKNAVDASNVMDR 1166
Q+ K+P +D RL + +A ++ R
Sbjct: 930 DQLAKIPGLDPRLARLCAEAIKLIRR 955
>gi|326329698|ref|ZP_08196019.1| putative ATP-dependent RNA helicase [Nocardioidaceae bacterium
Broad-1]
gi|325952463|gb|EGD44482.1| putative ATP-dependent RNA helicase [Nocardioidaceae bacterium
Broad-1]
Length = 926
Score = 337 bits (865), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 201/538 (37%), Positives = 287/538 (53%), Gaps = 44/538 (8%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+ A++YDF +D+FQ + + G V+V+APT SGKT++ E A +A R+ FYTTP
Sbjct: 23 DFAALYDFGLDEFQIQACKEIEDGKGVLVAAPTGSGKTIVGEFAIHLALATGRKAFYTTP 82
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+ + + +G + VGLLTGD+ +N EA +++MTTE+LRNMLY +
Sbjct: 83 IKALSNQKYNDLVKRYGPDQVGLLTGDNVVNGEAPVVVMTTEVLRNMLY------AGSHT 136
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DEVHYL+D SRG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G+
Sbjct: 137 LMGLGFVVMDEVHYLADRSRGAVWEEVIIHLPESVSVVSLSATVSNAEEFGEWLTTVRGE 196
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD--GGS 388
T I +RPVPL + ++ L ++ +K +D
Sbjct: 197 TTTIIEEKRPVPLYQHVMAGRRIMDLFASSDVDAAAGFVKEGAPVNGELMKLARDDWAAG 256
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
R + R D N G ++ RR +P ++ + L+ ++LPAI F+
Sbjct: 257 RMTDRRTPKDRRKGN-----GNRRVGNG-----RRVWIPSRVEVINALQRDNLLPAINFV 306
Query: 449 FNRRGCDAAVQYLEDCNL--LDECEMSEVELALKRFRILYPDAVREPA-----IKGLLKG 501
F+R GCDAAVQ NL E E+ ++ PD R + GL +G
Sbjct: 307 FSRVGCDAAVQQCIQANLRLTTPDERDEIFAYVEEACADLPDEDRHVLGYHDWVDGLTRG 366
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
VAAHHAG LP +K +EELF RGLVK VFATETLA GINMPART V+ LSK +
Sbjct: 367 VAAHHAGLLPAFKQVVEELFLRGLVKAVFATETLALGINMPARTVVIEKLSKWNGEAHVN 426
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
L+ E Q+ GRAGRRG+D GH V++ E L PL S F SY M +
Sbjct: 427 LSPGEYTQLVGRAGRRGLDVEGHGVVLWQQGLNPRELAGLASTRTYPLRSSFRPSYNMAV 486
Query: 622 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 679
NL+ Q GR+ +R+L+EQSF + ++ ++ K +
Sbjct: 487 NLVH-----------------QFGRA--RSRELLEQSFAQFQADKAVVGLARQVRKAE 525
>gi|221632204|ref|YP_002521425.1| putative DNA helicase [Thermomicrobium roseum DSM 5159]
gi|221156835|gb|ACM05962.1| putative DNA helicase [Thermomicrobium roseum DSM 5159]
Length = 948
Score = 337 bits (865), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 207/515 (40%), Positives = 282/515 (54%), Gaps = 52/515 (10%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+++ + Y FR D FQ ++ AFL G SV+V+APT +GKT++AE T R+ YT
Sbjct: 17 IEQFSVFYPFRFDPFQLEAMLAFLEGKSVMVAAPTGTGKTVVAEFGVYETFRRGARVMYT 76
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKFR+ R +GDN VGLLTGD N A I++MTTE+LRNML Q+ + S
Sbjct: 77 TPIKALSNQKFRDLRAIYGDN-VGLLTGDVTENPHAPIVVMTTEVLRNMLLQTPWELDS- 134
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
V ++ DE+HYL+D RGT WEE II CP+ +Q+ICLSATV+NA E+A WI + H
Sbjct: 135 -----VQCVIFDEIHYLADPERGTTWEESIILCPEHIQLICLSATVSNAQEIADWISRTH 189
Query: 329 GKTELITSSRRPVPLT-WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
+LI + R VPL WYF + L ++D G+ +V Y + G
Sbjct: 190 RPIQLIVHTERAVPLALWYFYDRKLRL-VIDHHGR----------------QVADYSNVG 232
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
R + + + I A L + DMLPAI+F
Sbjct: 233 GEIRALIGRGGLTAERRREAEEAEPPPWEIIQA---------------LAAEDMLPAIYF 277
Query: 448 IFNRRGCD--AAVQYLEDCNLL-DECEMSEVELALKRFRI-LYPDAVREPAIKGLL---- 499
+FNRR C+ A + NL+ D + ++ F L P+ ++ ++
Sbjct: 278 LFNRRDCEDYATRLAMMRVNLVRDRATRQRIAHVIESFLASLRPEDRELSQVQTIVQLAA 337
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
KG+ HHAG LPI K +E LF +GL+KVVFAT+TLA G+NMPART V+ ++K R
Sbjct: 338 KGIGFHHAGLLPILKQLVEVLFSQGLMKVVFATDTLALGVNMPARTVVIGRMTKWDGRRR 397
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
LT NE QMAGRAGRRG+D RG+VV+ +P+ +E + +EP+ S FT Y
Sbjct: 398 RLLTPNEFQQMAGRAGRRGMDERGNVVVPYSPWISFKEVLAVATGELEPVRSAFTIRYNT 457
Query: 620 VLNLL---AGAKVMHLSNES-DDMKALQAGRSLEE 650
VLNL G +V L ES +A Q R LEE
Sbjct: 458 VLNLWDPPRGDRVRQLFQESLAQYQAAQRVRLLEE 492
>gi|170782067|ref|YP_001710399.1| helicase [Clavibacter michiganensis subsp. sepedonicus]
gi|169156635|emb|CAQ01787.1| putative helicase [Clavibacter michiganensis subsp. sepedonicus]
Length = 823
Score = 337 bits (864), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 231/617 (37%), Positives = 326/617 (52%), Gaps = 65/617 (10%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR---RI 205
++ AS F +D FQR++ E+ G SV+V+APT +GKT++AE A +A QR +I
Sbjct: 23 LESFASGLRFDLDPFQRAAAESLENGRSVLVAAPTGAGKTIVAEFAVY--LAMQRPSAKI 80
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
FYT P+KALSNQK+ E +G + VGLLTGD+ +N A+I++MTTE+LRNMLY +
Sbjct: 81 FYTAPMKALSNQKYAELVAEYGPDEVGLLTGDTNVNSRARIVVMTTEVLRNMLYADSDL- 139
Query: 266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325
L D+ +++DEVHYL+D RG VWEE+II+ P+ V++I LSATV+NA+E W+
Sbjct: 140 -----LRDLAFVIMDEVHYLADRFRGAVWEEVIIHLPQSVRMISLSATVSNAEEFGDWLQ 194
Query: 326 QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
+ G+T++I S RPVPL + + +L L D G +++ ++++
Sbjct: 195 AVRGETDVIVSEERPVPLEQHVIVRHRMLDLFDSSGLAATHRVNPELVRMT--------H 246
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
GG R + +S + G R P+V+ L R++LPAI
Sbjct: 247 GGGREAVRVRGGQGHSRGRAGAGGGSGRRAPGPWDRGRMDRPEVVALL---EERNLLPAI 303
Query: 446 WFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALK-RFRILYPDAVREPA----IKGL 498
+FIF+R GCDAAV + L E E+ ++ R R L + + ++GL
Sbjct: 304 FFIFSRAGCDAAVTQVLRAGVRLTHAHERDEIRAVVEERCRTLRDEDLAVLGYWEWLEGL 363
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+GVAAHHAG LP +K +EELFQR LVK VFATETLA GINMPART VL L K
Sbjct: 364 ERGVAAHHAGMLPAFKEVVEELFQRKLVKAVFATETLALGINMPARTVVLEQLEKFNGEA 423
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
R+ LT E Q+ GRAGRRGID GH V+ + L PL S F +Y
Sbjct: 424 RVPLTPGEYTQLTGRAGRRGIDVEGHAVIQWKDGLDPQAVASLASRRTYPLNSSFRPTYN 483
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVM--LAAKDELC 676
M +NL+ Q GR E R+++E SF + + LA K
Sbjct: 484 MAVNLID-----------------QFGR--ERTREVLESSFAQFQADRAVVDLARK---V 521
Query: 677 KIQKET-----DVLTSEISDDAIDRKSRRLLSE-----AAYKEMANLQEELKAEKRFR-- 724
+ Q+E+ + + D RR LS+ AA +M + + +KR R
Sbjct: 522 RTQEESLAGYEKAMVCHLGDFREYSGLRRELSDLERATAARADMQQPGQHGERDKRQRQL 581
Query: 725 TELRRRMELKRFSALKD 741
T+LRRRM+ A KD
Sbjct: 582 TDLRRRMKAHPCHACKD 598
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 7/196 (3%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVI----HETRALDINTQVIFPLGETAA 1012
E+ RLK ++ L ++I + K F R++ ++ + RA D P G
Sbjct: 607 ERWWRLKRQTDALGQQIRTRTNAVAKVFDRVTELLLSLGYLKRAADGQVAPT-PNGRMLK 665
Query: 1013 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 1072
I G+ +L +A LR ++ +DL PA LAA+ ASLV + ++ +N+ ++ P
Sbjct: 666 RIYGDRDLLIAECLRTQVWVDLDPAALAAMAASLVYQPLRDEGDRNDRNL--PRGAFRAA 723
Query: 1073 INVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARL 1132
+ +E S +++ + + L + + WA G + ++ + L GD R
Sbjct: 724 LERTEEIWSRLDDVERERRLPTTDPLSTGLCAPMHRWARGGSLDAVLDEADLAAGDFVRW 783
Query: 1133 LRRTIDLLAQIPKLPD 1148
++TIDLL Q+ + D
Sbjct: 784 TKQTIDLLDQLSIVAD 799
>gi|269126555|ref|YP_003299925.1| DSH domain-containing protein [Thermomonospora curvata DSM 43183]
gi|268311513|gb|ACY97887.1| DSH domain protein [Thermomonospora curvata DSM 43183]
Length = 916
Score = 336 bits (862), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 211/558 (37%), Positives = 290/558 (51%), Gaps = 71/558 (12%)
Query: 117 SSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSS 176
SSP + E + R V++ G ++D ++YDF +D+FQ + A G
Sbjct: 2 SSPGTTPAERYAAYRAR-----VRDNGPALLD---FQTLYDFELDEFQLEACRALEAGKG 53
Query: 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236
V+V+APT SGKT++ E A + R+ FYTTP+KALSNQK+ + +G VGLLTG
Sbjct: 54 VLVAAPTGSGKTVVGEFAVHLALLEGRKCFYTTPIKALSNQKYADLVRRYGPGKVGLLTG 113
Query: 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEE 296
D+++N EA I++MTTE+LRNMLY + L + +V+DEVHYL+D RG VWEE
Sbjct: 114 DNSVNGEAPIVVMTTEVLRNMLY------AGSPTLAGLAFVVMDEVHYLADRFRGAVWEE 167
Query: 297 IIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPL 356
+II+ P V+I+ LSATV+NA+E W+ ++ G+T +I RPVPL + L L
Sbjct: 168 VIIHVPDSVRIVALSATVSNAEEFGEWLQEVRGETAVIVDEHRPVPLFQHMLVGNRLYDL 227
Query: 357 LDEKGKHMNR-KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSK 415
+ G +R K++ ++ E++ K S RR RK S
Sbjct: 228 FVDTGDGQDRPKINPQLRNIAVEEIRRAKIN-SGRRTGRKRIARPPRFRPPSR------- 279
Query: 416 NSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL-----------EDC 464
+V Q +D +LPAI FIF+R GCDAAV E
Sbjct: 280 --------PEVIQRLDRA------GLLPAITFIFSRAGCDAAVAQCLHAGLRLTSRQEAE 325
Query: 465 NLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRG 524
+ E+ +LA + R+L D ++GL++G+AAHHAG LP +K +EELF RG
Sbjct: 326 EIRAHVELRTADLADEDLRVLGYDQW----LEGLMRGIAAHHAGMLPTFKEIVEELFVRG 381
Query: 525 LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 584
L+K VFATETLA GINMPART V+ L K LT E Q+ GRAGRRGID GH
Sbjct: 382 LIKAVFATETLALGINMPARTVVIEKLDKWNGETHADLTPGEYTQLTGRAGRRGIDVEGH 441
Query: 585 VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQA 644
V++ +P L PL S F SY M +NL+
Sbjct: 442 AVVIWSPGMDPFAVAGLAGTRTYPLNSSFRPSYNMAVNLVGA-----------------V 484
Query: 645 GRSLEEARKLVEQSFGNY 662
GR E AR L+E+SF +
Sbjct: 485 GR--ERARNLLEESFAQF 500
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 108/241 (44%), Gaps = 11/241 (4%)
Query: 928 KVARLKKKIAR--TEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFL 985
+++RL+++I R G E + D ++ E + RLK + L +R+E + F
Sbjct: 676 EISRLRREIRRHPCHGCDERE---DHARWAE-RYFRLKRDTDALRRRVEGRSQVIARTFD 731
Query: 986 RISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCAS 1045
R+ V+ + L+ +T + G I E +L A LR + +L+PA+LAA ++
Sbjct: 732 RVCAVLEQLGYLEGDT--VTEEGRRLGRIYNELDLLTAESLRAGLWEELEPAELAACVSA 789
Query: 1046 LVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGM 1105
LV E R + ++ P + + ++ + V D F+
Sbjct: 790 LVYES---RQPDDAATPRTPPGAAQEALAAMMRLWGELEAIERDNRVSFLREPDLGFAWT 846
Query: 1106 VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMD 1165
WASG + E++++ + GD R +++ IDLL Q+ R+++ A A + +
Sbjct: 847 AYRWASGHSLDEVLLESQMTAGDFVRAVKQLIDLLGQVADAAPEGSRVRQTAGKAMDGLR 906
Query: 1166 R 1166
R
Sbjct: 907 R 907
>gi|50954553|ref|YP_061841.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951035|gb|AAT88736.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 811
Score = 335 bits (859), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 193/477 (40%), Positives = 282/477 (59%), Gaps = 39/477 (8%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAA-VATVANQRRIFYTTPLKALSN 216
F +D FQR + G SV+V+APT +GKT++AE A +A ++FYTTP+KALSN
Sbjct: 34 FDLDPFQREACTCLENGRSVLVAAPTGAGKTIVAEFAVFLAMRQANAKVFYTTPMKALSN 93
Query: 217 QKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276
QKF+EF++T+G +VGLLTGD+ IN A+I++MTTE+LRNMLY + L D+
Sbjct: 94 QKFQEFQDTYGPESVGLLTGDTNINSHARIVVMTTEVLRNMLYADSDL------LGDLAY 147
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
+V+DEVHYL+D RG VWEE+II+ P V+++ LSATV+NA+E W+ + G T+++ S
Sbjct: 148 VVMDEVHYLADRFRGAVWEEVIIHLPPAVRMVSLSATVSNAEEFGDWLQAVRGDTDVVVS 207
Query: 337 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 396
RPVPL + ++ L+ L D G +++ +Q++ S G R +SR+
Sbjct: 208 EERPVPLEQHILMRSKLIDLFDSSGLAAANRVNPELVQMARS--------GGRVLSSRQR 259
Query: 397 ADMNSNNIVTSFGQHQLSKNSINAIR--RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
D+ G++ ++ R R+++ +++D ++LPAI+F+F+R GC
Sbjct: 260 RDI---------GRYHSRGGRPDSFRMNRAEIVRLLD------EHNLLPAIFFLFSRNGC 304
Query: 455 DAAVQYL--EDCNLLDECEMSEVE-LALKRFRILYPDAVREPA----IKGLLKGVAAHHA 507
DAAV+ L ++ E ++ + +R R L + + ++GL GVAAHHA
Sbjct: 305 DAAVRQTLRAGVRLTEQRERDDIRSIVEERCRTLMDEDLAVLGYWEWLEGLEHGVAAHHA 364
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
G LP +K +EELF+R LVKVVFATETLA GINMPART VL L K R+ +T E
Sbjct: 365 GMLPAFKEVVEELFRRKLVKVVFATETLALGINMPARTVVLEKLEKFNGESRVPITPGEY 424
Query: 568 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
Q+ GRAGRRGID G+ V+ + L PL S F +Y M +NL+
Sbjct: 425 TQLTGRAGRRGIDVEGNSVIQWEDGLDPQSVASLASRRSYPLNSSFRPTYNMAVNLI 481
>gi|119488898|ref|ZP_01621860.1| antiviral protein [Lyngbya sp. PCC 8106]
gi|119455059|gb|EAW36201.1| antiviral protein [Lyngbya sp. PCC 8106]
Length = 1026
Score = 334 bits (857), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 250/763 (32%), Positives = 375/763 (49%), Gaps = 116/763 (15%)
Query: 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC----------NLLDECEMSEV 475
VP+ + L+ L+ +MLPAI+FIF+RRGCD AV E+C +L++E E + +
Sbjct: 360 VPETLYVLYELQEEEMLPAIYFIFSRRGCDLAV---EECFYAVHELGFISLVNEAEATLL 416
Query: 476 ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 535
+ F D +I+ L G+AAHHAG LP WK +EELF GL+KVV+ATETL
Sbjct: 417 REKIDIFCAHNTDVSPSRSIEPLYLGIAAHHAGILPAWKVLVEELFTLGLIKVVYATETL 476
Query: 536 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 595
AAGINMPART V+SSLSKRT G L +E QM+GRAGRRG+D GHVV VQTP+EGA
Sbjct: 477 AAGINMPARTTVISSLSKRTDEGIRLLKPSEFLQMSGRAGRRGMDLLGHVVTVQTPFEGA 536
Query: 596 EECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV 655
E L +PLVSQFT SYGMVLNLL SLE+A+ L+
Sbjct: 537 TEAAYLATTEPDPLVSQFTPSYGMVLNLL-------------------QTHSLEQAKALI 577
Query: 656 EQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQE 715
E+SFG Y+ + + + E+ +++ E + + + + D+ L E LQ
Sbjct: 578 ERSFGQYLSTASLQPQEVEMQQLKAELADIEANLGLEG-DQTIEDL--ETVIANYEKLQA 634
Query: 716 ELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGK 775
L+ E+R L +L+D L + G+ ++ + LG
Sbjct: 635 RLREERR----------------LLKLLQDQAEETL---------TAGMSQALVSAVLGT 669
Query: 776 FDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPS---YYVALGSDNTWYTFTEK 832
SL + A N Q G Q P Y++ LG DN WY
Sbjct: 670 LVSLRGKHVSPNAR-------NPEDQPLGAVLVAQTPSPGQAPYFLCLGQDNRWYV---- 718
Query: 833 WIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSW 892
+G +V GD LPR T +D ++ + KL G
Sbjct: 719 -------VGASDVVGLHGD-LPRLTAVDYMDIPDIPY-KLGQKRKGD------------- 756
Query: 893 SLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTV 952
+L+ V +SE + + Q +V +++++ T E+ K +
Sbjct: 757 TLSEAVAQQISE--------VPMPEVPPEVQHQMQQVREIEEQL-ETHPLYEWGKPQKLL 807
Query: 953 KFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAA 1012
K E+ L + L IE + W++FL + ++ + ALD + LG+ A
Sbjct: 808 K-RRERWTDLNYEVRLLQAEIEADQGHYWQKFLDLILILQQFEALDELQPTV--LGQATA 864
Query: 1013 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 1072
A+RG+NELWL + L + L+P+QLAA CA+LV+E + W + Y+ S V +
Sbjct: 865 ALRGDNELWLGIALMSGEFYQLEPSQLAAACAALVTEISRSDTWTD----YQLSEPVQSA 920
Query: 1073 INVLDEHRSSFLELQEKHGVE---IPCCLDSQ-FSGMVEAWASGLTWREMMMDCALDDGD 1128
+ L R +++Q + VE +P + Q S ++E W G+ W +++ +LD+GD
Sbjct: 921 LERLWGLRKMLIKVQSHYQVEFLVLPERWEHQNMSAIIEQWGQGVDWLQLVEHTSLDEGD 980
Query: 1129 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 1171
L R++RRT+D L+QIP +P ++ ++ A+DA ++DR PI+E
Sbjct: 981 LVRMIRRTLDFLSQIPHVPHLNGSFKQKAMDAKKLLDRYPINE 1023
Score = 302 bits (774), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 165/389 (42%), Positives = 233/389 (59%), Gaps = 40/389 (10%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
EL ++ F++D FQ+ +I+A G SVVV APT SGKTLI E A ++ RR+FYTTP
Sbjct: 12 ELDKLFPFQLDPFQQDAIDALKAGKSVVVCAPTGSGKTLIGEYAIYHALSRGRRVFYTTP 71
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSSES 269
LKALSNQK R+F+E FG NVGLLTGD ++NREA +++MTTEI RNMLY + +G V +
Sbjct: 72 LKALSNQKLRDFQERFGVENVGLLTGDLSMNREAAVVVMTTEIFRNMLYGTPIGEVG--T 129
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L V+ +VLDE HY++D +RGTVWEE IIYCP E++++ LSAT+AN+D+L W+ ++HG
Sbjct: 130 SLEGVEAVVLDECHYMNDRTRGTVWEESIIYCPPEIKLLALSATIANSDQLTDWLCKVHG 189
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
TELI SS RPVPL ++F L PLL+E G +NR L
Sbjct: 190 PTELIYSSFRPVPLQFHFCNTQGLYPLLNESGTEINRHL--------------------- 228
Query: 390 RRNSRKHADMNSNNIVTSF-GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
+K + +N + F +H+ S+ + L L+ + LP I+FI
Sbjct: 229 --EPKKRRNNRFDNRRSRFHNKHKQQGQSLAS-----------ALKQLQKQGTLPTIYFI 275
Query: 449 FNRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 506
+R+GCD AV +E + ++ E + A+ F P + ++ L +G+A +H
Sbjct: 276 SSRKGCDRAVTDPKIERISFVNSSEADRLNTAINAFLNANPKLKQFKSLDSLSRGIATYH 335
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETL 535
P W+ F+ ELFQ+GLVKV+F ETL
Sbjct: 336 LELPPAWRIFVAELFQQGLVKVLFVPETL 364
>gi|297243516|ref|ZP_06927448.1| superfamily II RNA helicase [Gardnerella vaginalis AMD]
gi|296888561|gb|EFH27301.1| superfamily II RNA helicase [Gardnerella vaginalis AMD]
Length = 877
Score = 334 bits (857), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 206/525 (39%), Positives = 291/525 (55%), Gaps = 77/525 (14%)
Query: 142 FGNEMIDVDELASIYD----FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVA 197
F N M +AS ++ F +D FQ +I+A G++V+V+APT +GKT++A+ A
Sbjct: 36 FKNTMKHERSMASKFERSLSFELDDFQLEAIDALENGNNVLVAAPTGAGKTVVADFAVFL 95
Query: 198 TVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNM 257
+ FYTTP+KALSNQK+ +F E +G + VGLLTGD+++N EA I++MTTE+LRNM
Sbjct: 96 AQNRNVKAFYTTPIKALSNQKYHDFCEQYGSDRVGLLTGDTSVNPEADIVVMTTEVLRNM 155
Query: 258 LYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA 317
LY+ + S + +VLDE+HYL+D RG VWEE+II+ PK V+II LSATV+N
Sbjct: 156 LYEHSITLQS------LGFVVLDEIHYLADKFRGAVWEEVIIHLPKSVKIIGLSATVSNV 209
Query: 318 DELAGWIGQIHGKTELITSSRRPVPLTWYF------STKTALLPLLDEKG-----KHMNR 366
++ + W+ + G+T L+ RPVPL + +T+ LL L D K +N
Sbjct: 210 EDFSAWLESVRGETHLVVDEHRPVPLERHVVIQEDSATEPELLDLYDHDNNGNVTKRVNP 269
Query: 367 KLS--LNYLQLSTSEVK-PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 423
L+ LN + K Y D R R +KH+ + G QL K + +
Sbjct: 270 ALTRKLNEFEYRARRRKESYSDSKYRYRKGKKHS--------ANGGVAQLDKCA-----K 316
Query: 424 SQVPQ---VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL---DECEMSEVE- 476
P+ VID L +L MLP I+FIF+R GCD AVQ + L+ DE EM E+
Sbjct: 317 RHTPRRWAVIDELDYL---GMLPGIYFIFSRSGCDQAVQQCLNAGLILTSDE-EMYEIRK 372
Query: 477 -----------------LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519
L+ +RFR L +G AAHHAG + +++ +E
Sbjct: 373 IVDSMVANQLSKEDLHALSFERFRF------------ALEQGFAAHHAGMIALFRHIVET 420
Query: 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 579
LF+RGL+KVVFATETLA G+NMPAR+ V+ L K +G + LT E Q+ GRAGRRGI
Sbjct: 421 LFERGLIKVVFATETLALGLNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGI 480
Query: 580 DNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
D+ G+ +LV ++ L V PL S F ++ M +NLL
Sbjct: 481 DDIGYAILVDHADFVPQQAAALSSKRVYPLHSSFVPTFNMAVNLL 525
>gi|415709926|ref|ZP_11463505.1| helicase [Gardnerella vaginalis 6420B]
gi|388055928|gb|EIK78813.1| helicase [Gardnerella vaginalis 6420B]
Length = 877
Score = 334 bits (856), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 206/525 (39%), Positives = 291/525 (55%), Gaps = 77/525 (14%)
Query: 142 FGNEMIDVDELASIYD----FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVA 197
F N M +AS ++ F +D FQ +I+A G++V+V+APT +GKT++A+ A
Sbjct: 36 FKNTMKHERSMASKFERSLSFELDDFQLDAIDALENGNNVLVAAPTGAGKTVVADFAVFL 95
Query: 198 TVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNM 257
+ FYTTP+KALSNQK+ +F E +G + VGLLTGD+++N EA I++MTTE+LRNM
Sbjct: 96 AQNRNVKAFYTTPIKALSNQKYHDFCELYGSDRVGLLTGDTSVNPEADIVVMTTEVLRNM 155
Query: 258 LYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA 317
LY+ + S + +VLDE+HYL+D RG VWEE+II+ PK V+II LSATV+N
Sbjct: 156 LYEHSITLQS------LGFVVLDEIHYLADKFRGAVWEEVIIHLPKSVKIIGLSATVSNV 209
Query: 318 DELAGWIGQIHGKTELITSSRRPVPLTWYF------STKTALLPLLDEKG-----KHMNR 366
++ + W+ + G+T L+ RPVPL + +T+ LL L D K +N
Sbjct: 210 EDFSAWLESVRGETHLVVDEHRPVPLERHVVIQEDSATEPELLDLYDHDNNGNVTKRVNP 269
Query: 367 KLS--LNYLQLSTSEVK-PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 423
L+ LN + K Y D R R +KH+ + G QL K + +
Sbjct: 270 ALTRKLNEFEYRARRRKESYSDSKYRYRKGKKHS--------INGGVAQLDKCA-----K 316
Query: 424 SQVPQ---VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL---DECEMSEVE- 476
P+ VID L +L MLP I+FIF+R GCD AVQ + L+ DE EM E+
Sbjct: 317 RHTPRRWAVIDELDYL---GMLPGIYFIFSRSGCDQAVQQCLNAGLILTSDE-EMYEIRK 372
Query: 477 -----------------LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519
L+ +RFR L +G AAHHAG + +++ +E
Sbjct: 373 IVDSMVANQLSKEDLHALSFERFRF------------ALEQGFAAHHAGMIALFRHIVET 420
Query: 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 579
LF+RGL+KVVFATETLA G+NMPAR+ V+ L K +G + LT E Q+ GRAGRRGI
Sbjct: 421 LFERGLIKVVFATETLALGLNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGI 480
Query: 580 DNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
D+ G+ +LV ++ L V PL S F ++ M +NLL
Sbjct: 481 DDIGYAILVDHADFVPQQAAALSSKRVYPLHSSFVPTFNMAVNLL 525
>gi|405979745|ref|ZP_11038086.1| hypothetical protein HMPREF9241_00809 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404391120|gb|EJZ86184.1| hypothetical protein HMPREF9241_00809 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 922
Score = 333 bits (854), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 195/480 (40%), Positives = 271/480 (56%), Gaps = 51/480 (10%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F+ D FQ +++A G SV+V+APT +GKT++ E A + +R FYTTP+KALSNQ
Sbjct: 51 FQADDFQIEAMDALEAGQSVLVAAPTGAGKTVVGEFATYLALQKGKRSFYTTPIKALSNQ 110
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
KF + R FG++ VGLLTGD++IN A I++MTTE+LRNM+Y + + L D+D +
Sbjct: 111 KFSDLRRRFGEDTVGLLTGDTSINSHAPIVVMTTEVLRNMIY-------AGADLSDLDSV 163
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
VLDEVHYL+D RG VWEE+II+ P E +I+ LSATV+NA+E WIG + G ++ S
Sbjct: 164 VLDEVHYLADRFRGPVWEEVIIHLPAEQKIVALSATVSNAEEFGTWIGHVRGGCRVVVSE 223
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RPVPL + G+H+ S P K G S R N +
Sbjct: 224 HRPVPLYQHMLV-----------GRHLYDLYS------------PSKKGESTRINPELRS 260
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIR--RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCD 455
+ +I G+ + + +R R P TL L +LP I F+F+R GC+
Sbjct: 261 AIGP-SIPGRTGRGGRNWHETARVRPPRESRP---STLIELDRAGLLPTITFVFSRAGCE 316
Query: 456 AAVQYLEDCN--LLDECEMSEVELALKRFR---------ILYPDAVREPAIKGLLKGVAA 504
AV + L ++ E ++ A+ + +L +A E L +G+AA
Sbjct: 317 DAVTQVVHAGIWLTNKEEQKQIATAVDEVKTQVGAQDCHVLGINAWGE----ALERGIAA 372
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HHAG LPI K +E LF RGL+K+V+ATETLA GINMPAR+ V+ SL K + +QLT
Sbjct: 373 HHAGLLPIQKETVENLFTRGLIKMVYATETLALGINMPARSVVIESLRKWNGAAHVQLTP 432
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E Q++GRAGRRGID GH +++ EE L PL+S FT +Y MV+NLL
Sbjct: 433 GEYTQLSGRAGRRGIDTEGHAIVLHRGQVAPEEVNALASKRTYPLISAFTPTYNMVVNLL 492
Score = 40.4 bits (93), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 17/208 (8%)
Query: 961 RLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENEL 1020
R+ + + +RI+ S +F R+ V+ E LD +T + GE I GE ++
Sbjct: 714 RINRELRTVNERIDSRTHSVAHKFDRVCQVLEELGFLDGDT--VTDQGERLRHIFGERDI 771
Query: 1021 WLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLD--- 1077
+ LR+ L A+LAA+ ++ V E + ++ + P N+ L
Sbjct: 772 IVMECLRSGAWSGLDDAELAAIVSTCVFESRR----EDGARPALPVGLSKNLTRALKATL 827
Query: 1078 EHRSSFLELQEKHGVEIPCCLDSQFSGMVE---AWASGLTWREMMMDCALDDGDLARLLR 1134
+ + +++++ G+E D SGM+E AWA G + + + GD R +R
Sbjct: 828 QASAKVADVEKRAGLEPTTEPD---SGMMEACLAWAHGASLGTSLDGEEMLGGDFVRWIR 884
Query: 1135 RTIDLLAQIPKLPDVDQRLQKNAVDASN 1162
+ +DLL Q+ D D+ + A A +
Sbjct: 885 QVMDLLDQLRH--DTDEAMASQAKRARH 910
>gi|156847381|ref|XP_001646575.1| hypothetical protein Kpol_1055p74 [Vanderwaltozyma polyspora DSM
70294]
gi|156117253|gb|EDO18717.1| hypothetical protein Kpol_1055p74 [Vanderwaltozyma polyspora DSM
70294]
Length = 1274
Score = 333 bits (853), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 202/523 (38%), Positives = 291/523 (55%), Gaps = 32/523 (6%)
Query: 125 EEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTS 184
E +W V L ++++ F +EM V A + F +D FQ+ ++ +G SV V+A TS
Sbjct: 288 ERKEWAHVVDLNHKIENF-SEM--VPNPARTWPFELDTFQKEAVYHLEQGDSVFVAAHTS 344
Query: 185 SGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREA 244
+GKT++AE A + N + YT+P+KALSNQKFR+F+ETF D +GL+TGD IN EA
Sbjct: 345 AGKTVVAEYAIAMSKRNMTKTIYTSPIKALSNQKFRDFKETFDDIEIGLITGDVQINPEA 404
Query: 245 QILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKE 304
LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+
Sbjct: 405 NCLIMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQH 458
Query: 305 VQIICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKH 363
V+ I LSATV N E A WIG+ K +I++ +RPVPL K L+P+++ K +
Sbjct: 459 VKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKNTLIPVINSKREF 518
Query: 364 M--NRKLSLNYLQLSTSEVKPYKD-----------GGSRRRNS-RKHADMNSNNIVTSFG 409
+ N K ++ S KP GGSRR S R + N + S G
Sbjct: 519 LEANFKKHKQLIEGVPSSSKPDDKKTNNSRGGSIRGGSRRGGSTRGGSSTRGNALSGSRG 578
Query: 410 QHQLSKNSINAIRRSQVPQVI--DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL 467
+ N RR + D + L+ R++LP + F+F+++ C+ YLE N
Sbjct: 579 AGAVGSNKSKFFRRGGPNKKTWPDIINFLKGRELLPVVIFVFSKKRCEDYADYLESLNFC 638
Query: 468 DECEMSEVELALKRFRILYPDAVRE-P---AIKGLL-KGVAAHHAGCLPIWKSFIEELFQ 522
+ E S++ + +++ RE P I+ LL +G+A HH G LPI K IE LF
Sbjct: 639 NNREKSQIHMFIEKSITRLKKEDRELPQILKIRSLLERGIAVHHGGLLPIVKELIEILFS 698
Query: 523 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 582
+GL++V+FATET A G+N+P RT + S + K G L E QMAGRAGRRG+D+
Sbjct: 699 KGLIRVLFATETFAMGLNLPTRTVIFSEIQKHDGVGLRDLNPGEFTQMAGRAGRRGLDDT 758
Query: 583 GHVVLVQTPYEGAEECCKLLFAGVE-PLVSQFTASYGMVLNLL 624
G V+++ K + GV L SQF +Y M+LNLL
Sbjct: 759 GTVIVMAYNDPLQSLSFKEVTLGVPTKLESQFKLTYNMILNLL 801
>gi|400534276|ref|ZP_10797814.1| ATP-dependent DNA helicase HelY [Mycobacterium colombiense CECT
3035]
gi|400332578|gb|EJO90073.1| ATP-dependent DNA helicase HelY [Mycobacterium colombiense CECT
3035]
Length = 922
Score = 333 bits (853), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 209/536 (38%), Positives = 290/536 (54%), Gaps = 63/536 (11%)
Query: 145 EMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRR 204
E++++ + F +D FQR + A RG V+V APT +GKT++ E A +A+ +
Sbjct: 3 ELVELTRFTAELPFALDGFQRRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALASGGK 62
Query: 205 IFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGM 264
FYTTPLKALSNQK + +G + +GLLTGD ++N +A +++MTTE+LRNMLY
Sbjct: 63 CFYTTPLKALSNQKHTDLTARYGRDRIGLLTGDMSVNADAPVVVMTTEVLRNMLY----- 117
Query: 265 VSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
+ L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LSATV+NA+E GWI
Sbjct: 118 -ADSPALHGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGWI 176
Query: 325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD--EKGKHMNRKLSLNYLQLSTSEVKP 382
+ G T ++ RPVPL + LL L D + +R+ +N L
Sbjct: 177 QTVRGDTTVVVDEHRPVPLWQHVLVGKRLLDLFDYDHERPAADRQPRVNPELLRHI---- 232
Query: 383 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
S RR + + +D G + S+ + R P VI TL S +L
Sbjct: 233 -----SHRREADRMSDWQPRRQAGRGGAGRPSRPRL--YRTPSRPDVIATL---DSEGLL 282
Query: 443 PAIWFIFNRRGCDAAVQY-----LEDCNLLDECEMSEV------ELALKRFRILYPDAVR 491
PAI F+F+R GCDAAVQ L+ + +++EV +LA +L R
Sbjct: 283 PAITFVFSRAGCDAAVQQCLRSPLQLTTQEERAQIAEVIEHRCGDLADADLGVLGYYEWR 342
Query: 492 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
E GLL+G+AAHHAG LP+++ +EELF GLV+ VFATETLA GINMPART VL L
Sbjct: 343 E----GLLRGLAAHHAGMLPVFRHTVEELFTAGLVQAVFATETLALGINMPARTVVLERL 398
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE---- 607
K + LT E Q+ GRAGRRGID GH V++ P E E + AG+
Sbjct: 399 VKFNGEQHVALTPGEYTQLTGRAGRRGIDVEGHAVVLWNPTEETTEPSAV--AGLASTRT 456
Query: 608 -PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F SY M +NL+ Q G E+A +L+EQSF Y
Sbjct: 457 FPLRSSFAPSYNMTINLVQ-----------------QMG--PEQAHRLLEQSFAQY 493
>gi|433455773|ref|ZP_20413843.1| superfamily II RNA helicase [Arthrobacter crystallopoietes BAB-32]
gi|432197131|gb|ELK53533.1| superfamily II RNA helicase [Arthrobacter crystallopoietes BAB-32]
Length = 942
Score = 332 bits (852), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 204/535 (38%), Positives = 285/535 (53%), Gaps = 78/535 (14%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQR + EA RG V+V+APT +GKT++ E A + FYTTP+KALSNQ
Sbjct: 31 FEMDPFQREACEALERGRGVLVAAPTGAGKTVVGEFAIYLAFQRGLKAFYTTPIKALSNQ 90
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ E + +G + VGLLTGD ++N A +++MTTE+LRNMLY ++ L ++ +
Sbjct: 91 KYTELVQVYGPDRVGLLTGDVSVNPHADVVVMTTEVLRNMLY------ANSDTLLELGYV 144
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVHYL+D RG VWEE+II+ P EV+++ LSATV+NA+E W+ + G T+++ S
Sbjct: 145 VMDEVHYLADRFRGAVWEEVIIHLPSEVRLVSLSATVSNAEEFGAWLDTVRGDTDVVVSE 204
Query: 338 RRPVPLTWYFSTKTALLPLL------DE------KGKHMNRKLSLN--YLQLSTSEVKPY 383
RPVPL + +L L DE G + +N L+L+ SE K
Sbjct: 205 HRPVPLWQHVMVGPDILDLFASDIAFDEAVPALSSGTGAGSRYEVNPELLELAYSEQKLN 264
Query: 384 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 443
+ R R+ S + ++ IRR+ P+VI L +LP
Sbjct: 265 RASNWGRPAGRRGKRPPSR-----------PQQPVSRIRRASRPEVIA---RLDKEGLLP 310
Query: 444 AIWFIFNRRGCDAAVQYLEDCNL--------------LDEC--EMSEVELALKRFRILYP 487
AI FIF+R GCDAAV+ D L +DE E+ E +LA+ F +
Sbjct: 311 AITFIFSRNGCDAAVRQCLDAGLWLTTEREREIIARRVDEAAREIPEEDLAVLGFWLWR- 369
Query: 488 DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
+GL++G+AAHHAG LP +K +E+LF GLV+ VFATETLA G+NMPART V
Sbjct: 370 --------EGLIRGIAAHHAGMLPTFKEVVEKLFADGLVRAVFATETLALGVNMPARTVV 421
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
L L K + +T+ E Q+ GRAGRRGID GH V++ P L
Sbjct: 422 LEKLDKFNGESHVNITAGEYTQLTGRAGRRGIDVEGHAVVLWQPGTDPAAVAGLASRRTY 481
Query: 608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F +Y M +NL+A Q GR AR+++E SF +
Sbjct: 482 PLNSSFRPTYNMSVNLIA-----------------QFGRI--RAREILETSFAQF 517
Score = 48.1 bits (113), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 97/209 (46%), Gaps = 24/209 (11%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIR- 1015
E+ +L+ + +L +I+ + K F R+ +++ L + + E+ +R
Sbjct: 723 ERWWKLRKETDQLMGQIQGRTNTIAKTFDRVCDLLDTYGYLQAHPDGRVTISESGNRLRR 782
Query: 1016 --GENELWLAMVLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSSIYEPST 1067
G+ +L +A+ L+ DL A++AA +SLV + GI+ ++ PS
Sbjct: 783 IYGDRDLLVALCLQAGAFDDLDAAEVAAFVSSLVFQAKREETGIRPKM---------PSV 833
Query: 1068 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMV---EAWASGLTWREMMMDCAL 1124
++ +++ S + +E+H ++P + + G+V WA G + + L
Sbjct: 834 SLETAVDIAVREWSVLNDREEQH--KLPLSGEPEL-GLVWPMYKWAQGRSLLTALQGTEL 890
Query: 1125 DDGDLARLLRRTIDLLAQIPKLPDVDQRL 1153
GD R ++ IDLL Q+ K+PD+D L
Sbjct: 891 AAGDFVRWAKQVIDLLDQLVKVPDMDPHL 919
>gi|237785498|ref|YP_002906203.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
gi|237758410|gb|ACR17660.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
Length = 954
Score = 332 bits (852), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 217/614 (35%), Positives = 303/614 (49%), Gaps = 92/614 (14%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A +DF D+FQ A RG V+VSAPT SGKT++ E A + +R FYTTP+
Sbjct: 15 FAHQHDFPFDQFQIDGCHAIERGRGVLVSAPTGSGKTIVGEFAVFLALETGKRCFYTTPI 74
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + R T+GD+ VGL+TGD +INR+A +++MTTE+LRNM+Y + L
Sbjct: 75 KALSNQKYNDLRATYGDDRVGLMTGDVSINRDADVIVMTTEVLRNMIY------ADADSL 128
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
++ +V+DEVHYL+D RG VWEEII+ + V I+ LSATV+N ++ WI G T
Sbjct: 129 DNLSHVVMDEVHYLADPERGPVWEEIILNLDESVSIVALSATVSNIEQFGEWIKMTRGDT 188
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
+I RPVPL Y +++PL + ++LS E+ RR
Sbjct: 189 NIIVWEHRPVPLHQYMLVGNSIIPLFSQDNDDATQELSAPI----NPELVSRCATAERRS 244
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
N R+ +R P VI L++ MLPAI FIF+R
Sbjct: 245 NGRR--------------------------KRPHRPAVIG---QLQAASMLPAIIFIFSR 275
Query: 452 RGCDAAVQYLEDCNLLDECEMSEVEL-----ALKRFRILYPDAVREPA-----------I 495
GC+ A L +C + V+L A + I+ D P
Sbjct: 276 AGCEGA---------LAQCYTARVQLTTRDEAREILSIIDADTADIPQEDLDLMGFRRWR 326
Query: 496 KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
L +G+AAHHAG LP ++ +E+LF RGL+KVVFATETLA GINMPART VL SL K
Sbjct: 327 TNLSRGIAAHHAGMLPAFRHIVEKLFVRGLLKVVFATETLALGINMPARTVVLESLVKFN 386
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 615
+ LT + Q+ GRAGRRGID G+ V++ P E L PL+S F
Sbjct: 387 GEAHVDLTPAQYTQLTGRAGRRGIDVLGNAVVLWQPSMDPEAVAGLASTRTYPLISTFRP 446
Query: 616 SYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDEL 675
Y M +NLL V E++ +L+E+SF ++ + ++A E
Sbjct: 447 GYNMSVNLLNTLGV-------------------EKSHRLLERSFAQFLANEDVVARAHER 487
Query: 676 CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKR 735
Q+ D E+ + R +L A + NL E EK+ + E R+ +R
Sbjct: 488 RAHQRHADSQHDELLELLGHRSENKLPEYVAIRR--NLSHE---EKKTQAENRK----ER 538
Query: 736 FSALKDILKDFENG 749
F + L G
Sbjct: 539 FKEISRCLGSLTVG 552
Score = 45.4 bits (106), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 1012 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 1071
A I +++L +A LR KI DL PA+LA V ++ V E K + P+ +
Sbjct: 793 ARIHNQSDLLIAQCLRRKIWDDLDPAELAGVVSTCVFENRK----SVPGDVEVPTQPLAT 848
Query: 1072 VINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDD 1126
I + + +E+H + + ++++ + + W +G + A L
Sbjct: 849 AIENTERLWEEIVTDEERHHLPMTRPIETELATAMHQWTAGAPLSYCVQAAAANGTSLTP 908
Query: 1127 GDLARLLRRTIDLLAQI 1143
GD R R+ ID+L QI
Sbjct: 909 GDFVRSCRQVIDVLNQI 925
>gi|415717362|ref|ZP_11466813.1| helicase [Gardnerella vaginalis 1500E]
gi|388060962|gb|EIK83632.1| helicase [Gardnerella vaginalis 1500E]
Length = 877
Score = 332 bits (851), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 203/507 (40%), Positives = 283/507 (55%), Gaps = 77/507 (15%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI--FYTTPLKALS 215
F +D FQR +I+A ++V+V+APT +GKT++A+ A +A QR + FYTTP+KALS
Sbjct: 55 FDLDDFQREAIDALEAENNVLVAAPTGAGKTVVADFAVF--LAQQRNVKAFYTTPIKALS 112
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+ +F E +G NVGLLTGD+++N EA I++MTTE+LRNMLY+S ++S +
Sbjct: 113 NQKYHDFCEQYGSKNVGLLTGDTSVNPEADIVVMTTEVLRNMLYESSITLNS------LG 166
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELIT 335
++LDE+HYL+D RG VWEE+II+ PK V+II LSATV+N ++ + W+ + G T L+
Sbjct: 167 FVILDEIHYLADKFRGAVWEEVIIHLPKTVKIIGLSATVSNVEDFSAWLESVRGTTHLVV 226
Query: 336 SSRRPVPLTWYF------STKTALLPLLDEKGK---------HMNRKLSLNYLQLSTSEV 380
RPVPL + T+ LL L D K + RKL+ + +
Sbjct: 227 DEHRPVPLERHVVIQEDGRTEPELLDLYDRDNKGNETKRVNPALTRKLN-EWEHRARRRQ 285
Query: 381 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLR 437
Y D R R +K V G + K++ R P+ VID L +LR
Sbjct: 286 DSYSDSKYRYRKGKKR--------VVRRGVAESDKSA-----RRHTPKRWAVIDELDYLR 332
Query: 438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLL--DECEMSEVE------------------L 477
MLP I+FIF+R GCD AVQ + L+ + EM E+ L
Sbjct: 333 ---MLPGIYFIFSRSGCDQAVQQCLNAGLILTSDDEMYEIRKIVDTMVANQLSKEDLHAL 389
Query: 478 ALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAA 537
+ +RFR L +G AAHHAG + +++ +E LF+RGL+KVVFATETLA
Sbjct: 390 SFERFRF------------SLEQGFAAHHAGMIALFRHIVETLFERGLIKVVFATETLAL 437
Query: 538 GINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEE 597
G+NMPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ GH VLV +
Sbjct: 438 GLNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLVDHADFIPAQ 497
Query: 598 CCKLLFAGVEPLVSQFTASYGMVLNLL 624
L V PL S F ++ M +NLL
Sbjct: 498 AAALSSKRVYPLHSSFVPTFNMAVNLL 524
>gi|425734135|ref|ZP_18852455.1| DEAD/DEAH box helicase [Brevibacterium casei S18]
gi|425482575|gb|EKU49732.1| DEAD/DEAH box helicase [Brevibacterium casei S18]
Length = 916
Score = 332 bits (851), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 221/601 (36%), Positives = 307/601 (51%), Gaps = 92/601 (15%)
Query: 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216
DF +D FQ + + G V+V+APT +GKT+IAE A + R+FYTTP+KALSN
Sbjct: 54 DFELDDFQIEACQELQEGKDVLVTAPTGAGKTIIAEFAVDLAMDAGTRVFYTTPIKALSN 113
Query: 217 QKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276
QKF + G NVGLLTGD+ I R+A I++MTTE+LRNMLY G GL D+
Sbjct: 114 QKFADLVAVHGAENVGLLTGDTTIRRDAPIIVMTTEVLRNMLYNDPG------GLDDLGF 167
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
+VLDEVHYL+D RG VWEE+II+ P+ VQ++ LSATV+N +E W+ ++ G T ++++
Sbjct: 168 VVLDEVHYLADRFRGPVWEEVIIHLPERVQVVSLSATVSNVEEFGAWLREVRGPTTVVST 227
Query: 337 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKL--SLNYLQLSTSEVKPYKDGGSRRRNSR 394
S RPVPL + + L H + ++ +L + + + ++ G+R R
Sbjct: 228 SHRPVPLVNHALVGHRMYDLFTH---HDSERIDPALAHATRTYGGPRSKRERGNRAR--- 281
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
RR Q++ +L MLPAI FIF+R GC
Sbjct: 282 --------------------------FRRPSRTQIVASLAEA---GMLPAIMFIFSRNGC 312
Query: 455 DAAV-QYLEDCNLLDECEMSE-VELALKRFR---------ILYPDAVREPAIKGLLKGVA 503
D AV QY+ L+ E + V AL+R R IL RE GLL+GVA
Sbjct: 313 DEAVEQYIATGADLNSREDNVIVNAALERLREELPAEDLGILGYHTFRE----GLLRGVA 368
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
AHHAG +P +K +EELF G++KVVFATETLA GINMPART VL L K + +T
Sbjct: 369 AHHAGMIPQFKELVEELFSAGVIKVVFATETLALGINMPARTVVLEKLVKFNGEAHVSIT 428
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E Q+ GRAGRRGID GH V+V P E L L S F +Y M NL
Sbjct: 429 PGEYTQLTGRAGRRGIDRIGHAVVVWHPTMDISEIAGLASNRSYALGSAFGPTYNMTANL 488
Query: 624 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 683
L+ S +A K++E SF + ++ K++K
Sbjct: 489 LSRM-------------------SPADAAKVLETSFAQFQADKAVVGLAR---KVRKNEA 526
Query: 684 VLTSEISDDAIDRKSRRLLSEAAYKEMANLQEEL----KAEKRFRTELRRRMELKRFSAL 739
+ + DR + E A L+ E+ K E R ++++++R ++ SAL
Sbjct: 527 TIAAYEKSMHCDRGD--------FGEYAALRREISETEKQETRTKSKVKQREIVESLSAL 578
Query: 740 K 740
K
Sbjct: 579 K 579
>gi|260903687|ref|ZP_05912009.1| DEAD/DEAH box helicase domain protein [Brevibacterium linens BL2]
Length = 907
Score = 332 bits (850), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 222/601 (36%), Positives = 305/601 (50%), Gaps = 92/601 (15%)
Query: 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216
+F +D FQ + G V+V+APT +GKTLIAE A +R+FYTTP+KALSN
Sbjct: 45 EFELDDFQLEACAQLQDGKDVLVTAPTGAGKTLIAEFAVELARDEGKRVFYTTPIKALSN 104
Query: 217 QKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276
QKF + + G NVGLLTGD++I R+A I++MTTE+LRNMLY V +GL D+
Sbjct: 105 QKFNDLMDVHGVENVGLLTGDTSIRRDAPIIVMTTEVLRNMLYNDV------AGLSDLGF 158
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
+VLDEVHYL+D RG VWEE+II+ P VQ++ LSATV+N +E W+ ++ G T ++++
Sbjct: 159 VVLDEVHYLADRFRGPVWEEVIIHLPDRVQMVSLSATVSNVEEFGAWLSEVRGPTTVVST 218
Query: 337 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKL--SLNYLQLSTSEVKPYKDGGSRRRNSR 394
S RPVPL + + L H + ++ +LN+ + GG R + R
Sbjct: 219 SHRPVPLVNHVLVGHRMYDLFTH---HDSDRIDPALNHATRT--------HGGPRSKRER 267
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
+ RR QV+ +L MLPAI FIF+R C
Sbjct: 268 A---------------------TRARFRRPSRTQVVSSLAEA---GMLPAIMFIFSRNAC 303
Query: 455 DAAV-QYLE---DCNLLDE-------CEMSEVELALKRFRILYPDAVREPAIKGLLKGVA 503
D AV QYL D N +E E ELA + IL + RE GLL GVA
Sbjct: 304 DEAVEQYLSSGFDLNSREEKVIVNAALEKLRDELASEDLGILGFHSFRE----GLLLGVA 359
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
AHHAG +P +K +EELF +G++KVVFATETLA GINMPART VL L K + +T
Sbjct: 360 AHHAGMIPQFKQLVEELFSQGIIKVVFATETLALGINMPARTVVLEKLVKFNGEAHVSIT 419
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E Q+ GRAGRRGID GH V++ P E L L S F +Y M NL
Sbjct: 420 PGEYTQLTGRAGRRGIDQIGHAVVIWHPSFEVNEIAGLASNRSYALNSAFGPTYNMTANL 479
Query: 624 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 683
L+ S EA K++E SF + ++ ++ K +
Sbjct: 480 LSRM-------------------SSAEAAKVLETSFAQFQADKAVVGLAKKVRKNEATIA 520
Query: 684 VLTSEISDDAIDRKSRRLLSEAAYKEMANLQEEL----KAEKRFRTELRRRMELKRFSAL 739
+ D D + E A L++ + K E R +++ R+R ++ +AL
Sbjct: 521 AYEKSMKCDLGD-----------FAEYARLRQAISDTEKQETRTKSKNRQREIVESLTAL 569
Query: 740 K 740
K
Sbjct: 570 K 570
>gi|283783257|ref|YP_003374011.1| DEAD/DEAH box helicase [Gardnerella vaginalis 409-05]
gi|283441854|gb|ADB14320.1| DEAD/DEAH box helicase [Gardnerella vaginalis 409-05]
Length = 877
Score = 332 bits (850), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 233/660 (35%), Positives = 335/660 (50%), Gaps = 108/660 (16%)
Query: 142 FGNEMIDVDELASIYD----FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVA 197
F N M +AS ++ F +D FQ +I+A ++V+V+APT +GKT++A+ A
Sbjct: 36 FKNTMKHEHSMASKFERSLSFELDDFQLEAIDALENDNNVLVAAPTGAGKTVVADFAVFL 95
Query: 198 TVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNM 257
+ FYTTP+KALSNQK+ +F E +G + VGLLTGD+++N EA I++MTTE+LRNM
Sbjct: 96 AQNRNVKAFYTTPIKALSNQKYHDFCELYGSDRVGLLTGDTSVNPEADIVVMTTEVLRNM 155
Query: 258 LYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA 317
LY+ + S + +VLDE+HYL+D RG VWEE+II+ PK V+II LSATV+N
Sbjct: 156 LYEHSITLQS------LGFVVLDEIHYLADKFRGAVWEEVIIHLPKSVKIIGLSATVSNV 209
Query: 318 DELAGWIGQIHGKTELITSSRRPVPLTWYF------STKTALLPLLDEKG-----KHMNR 366
++ + W+ + G+T LI RPVPL + +T+ LL L D K +N
Sbjct: 210 EDFSAWLESVRGETHLIVDEHRPVPLERHVVVQEDSATEPELLDLYDHDNNGNVTKRVNP 269
Query: 367 KLS--LNYLQLSTSEVK-PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 423
L+ LN + K Y D R R +KH + G QL K + +
Sbjct: 270 ALTRKLNEFEYRARRRKESYSDSKYRYRKGKKHR--------VNGGVAQLDKCA-----K 316
Query: 424 SQVPQ---VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL---DECEMSEVE- 476
P+ VID L +L MLP I+FIF+R GCD AVQ + L+ DE EM E+
Sbjct: 317 RHTPRRWAVIDELDYL---GMLPGIYFIFSRSGCDQAVQQCLNAGLILTSDE-EMYEIRK 372
Query: 477 -----------------LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519
L+ +RFR L +G AAHHAG + +++ +E
Sbjct: 373 IVDSMVANQLSKEDLHALSFERFRF------------ALEQGFAAHHAGMIALFRHIVET 420
Query: 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 579
LF+RGL+KVVFATETLA G+NMPAR+ V+ L K +G + LT E Q+ GRAGRRGI
Sbjct: 421 LFERGLIKVVFATETLALGLNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGI 480
Query: 580 DNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDM 639
D+ G+ +LV ++ L V PL S F ++ M +NLL N SD
Sbjct: 481 DDIGYAILVDHADFVPQQAAALSSKRVYPLHSSFVPTFNMAVNLL---------NSSD-- 529
Query: 640 KALQAGRSLEEARKLVEQSFGNY---VGSNVMLAAKDEL-CKIQKETDVLTSEISDDAID 695
+ AR +++SF + + + +EL ++ + E D A
Sbjct: 530 --------ADTARTTLDRSFAQWEANASAERLHNRMNELETALKGYEEAFHCEHGDFAEF 581
Query: 696 RKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLC 755
+ R L EA + + L+ L FRT+ R F AL D++ + C
Sbjct: 582 LQLRMKLKEAQHDQRRKLKHTL-----FRTDAERTAA---FKALDDVIANLREAERTHPC 633
>gi|298252807|ref|ZP_06976601.1| superfamily II RNA helicase [Gardnerella vaginalis 5-1]
gi|297533171|gb|EFH72055.1| superfamily II RNA helicase [Gardnerella vaginalis 5-1]
Length = 877
Score = 332 bits (850), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 233/660 (35%), Positives = 335/660 (50%), Gaps = 108/660 (16%)
Query: 142 FGNEMIDVDELASIYD----FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVA 197
F N M +AS ++ F +D FQ +I+A ++V+V+APT +GKT++A+ A
Sbjct: 36 FKNTMKHEHSMASKFERSLSFELDDFQLEAIDALENDNNVLVAAPTGAGKTVVADFAVFL 95
Query: 198 TVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNM 257
+ FYTTP+KALSNQK+ +F E +G + VGLLTGD+++N EA I++MTTE+LRNM
Sbjct: 96 AQNRNVKAFYTTPIKALSNQKYHDFCELYGSDRVGLLTGDTSVNPEADIVVMTTEVLRNM 155
Query: 258 LYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA 317
LY+ + S + +VLDE+HYL+D RG VWEE+II+ PK V+II LSATV+N
Sbjct: 156 LYEHSITLQS------LGFVVLDEIHYLADKFRGAVWEEVIIHLPKSVKIIGLSATVSNV 209
Query: 318 DELAGWIGQIHGKTELITSSRRPVPLTWYF------STKTALLPLLDEKG-----KHMNR 366
++ + W+ + G+T LI RPVPL + +T+ LL L D K +N
Sbjct: 210 EDFSAWLESVRGETHLIVDEHRPVPLERHVVVQEDSATEPELLDLYDHDNNGNVTKRVNP 269
Query: 367 KLS--LNYLQLSTSEVK-PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 423
L+ LN + K Y D R R +KH + G QL K + +
Sbjct: 270 ALTRKLNEFEYRARRRKESYSDSKYRYRKGKKHR--------VNGGVAQLDKCA-----K 316
Query: 424 SQVPQ---VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL---DECEMSEVE- 476
P+ VID L +L MLP I+FIF+R GCD AVQ + L+ DE EM E+
Sbjct: 317 RHTPRRWAVIDELDYL---GMLPGIYFIFSRSGCDQAVQQCLNAGLILTSDE-EMYEIRK 372
Query: 477 -----------------LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519
L+ +RFR L +G AAHHAG + +++ +E
Sbjct: 373 IVDSMVANQLSKEDLHALSFERFRF------------ALEQGFAAHHAGMIALFRHIVET 420
Query: 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 579
LF+RGL+KVVFATETLA G+NMPAR+ V+ L K +G + LT E Q+ GRAGRRGI
Sbjct: 421 LFERGLIKVVFATETLALGLNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGI 480
Query: 580 DNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDM 639
D+ G+ +LV ++ L V PL S F ++ M +NLL N SD
Sbjct: 481 DDIGYAILVDHADFVPQQAAALSSKRVYPLHSSFVPTFNMAVNLL---------NSSD-- 529
Query: 640 KALQAGRSLEEARKLVEQSFGNY---VGSNVMLAAKDEL-CKIQKETDVLTSEISDDAID 695
+ AR +++SF + + + +EL ++ + E D A
Sbjct: 530 --------ADTARTTLDRSFAQWEANASAERLHNRMNELETALKGYEEAFHCEHGDFAEF 581
Query: 696 RKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLC 755
+ R L EA + + L+ L FRT+ R F AL D++ + C
Sbjct: 582 LQLRMKLKEAQHDQRRKLKHTL-----FRTDAERTAA---FKALDDVIANLREAERTHPC 633
>gi|420154156|ref|ZP_14661079.1| DEAD/DEAH box helicase [Actinomyces massiliensis F0489]
gi|394755492|gb|EJF38710.1| DEAD/DEAH box helicase [Actinomyces massiliensis F0489]
Length = 982
Score = 332 bits (850), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 217/575 (37%), Positives = 293/575 (50%), Gaps = 90/575 (15%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
++ A YDF +D FQ EA RG V+V+APT +GKT++ E A +A + FY
Sbjct: 21 ELTRFADSYDFPLDDFQVRGCEALERGEGVLVAAPTGAGKTVVGEFAIHLALAKGLKAFY 80
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK+ + +G +VGLLTGD+++N A +++MTTE+LRNMLY
Sbjct: 81 TTPIKALSNQKYLDLLARYGTQHVGLLTGDTSVNPHADVIVMTTEVLRNMLY-------- 132
Query: 268 ESGLFDVD---VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
SG D+D +V+DEVHYL+D RG VWEE+II+ EVQ++ LSATV+NA+E W+
Sbjct: 133 -SGSRDLDRLGFVVMDEVHYLADRFRGPVWEEVIIHLAPEVQVVSLSATVSNAEEFGDWL 191
Query: 325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPL---------------LDEKGK--HMNRK 367
GQ+ G+T ++ S RPVPLT + LL L + + G+ +
Sbjct: 192 GQVRGRTAVVVSEHRPVPLTQHMMVGRRLLRLHTVPSSSPSPTAVSGVSDSGETSETAAE 251
Query: 368 LSLN----------------YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQH 411
L LN S S P + R R H+D + +
Sbjct: 252 LPLNPDLLKALARARRAAAGEAGASKSGRGPVGSRARQWRRGRSHSD---------YPAY 302
Query: 412 QLSKNSINAIR--RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC--NLL 467
+ R R + P + + L D+LPAI F+F+R GC AV D +L
Sbjct: 303 PARRRGDGGARMARLRPPSRVTVITALEQADLLPAIVFVFSRAGCQQAVDQAVDAGIDLT 362
Query: 468 DECEMSEVELALKRFRILYPDAVREPAIKG-------LLKGVAAHHAGCLPIWKSFIEEL 520
E E + + ++R P R+ + G L +GVAAHHAG LP++K +EEL
Sbjct: 363 TESEAARIREVIERHTAEIP--TRDLGVLGFRNWAHALERGVAAHHAGLLPVFKETVEEL 420
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F GLVKVV+ATETLA GINMPART VL SL K S + L+ E Q+ GRAGRRGID
Sbjct: 421 FSAGLVKVVYATETLALGINMPARTVVLESLRKWNGSAHVTLSPGEYTQLTGRAGRRGID 480
Query: 581 NRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMK 640
GH V++ L PLVS F +Y M +NLL
Sbjct: 481 IEGHAVVLAADDIEPAFVSSLASRRTYPLVSAFRPTYNMAVNLL---------------- 524
Query: 641 ALQAGR-SLEEARKLVEQSFGNYVG--SNVMLAAK 672
GR S AR+++E SF Y S V LAA+
Sbjct: 525 ----GRTSRARAREVLESSFAQYQADRSVVELAAQ 555
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 4/140 (2%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSI-YEPS 1066
G A I E +L ++ LR+ + L PA LAA ++ V E RL + + P
Sbjct: 808 GRVLARIYAERDLLISECLRHGLWQGLDPADLAAAVSACVYE---PRLATQSLGLPIAPG 864
Query: 1067 TTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD 1126
+ + V+ S +L+ +E + +G V AWA G E++ C L
Sbjct: 865 SRLGAVLREEIRLSRSINDLETLARIEFSSGAEPALAGAVRAWAEGADLAEVLEACELTA 924
Query: 1127 GDLARLLRRTIDLLAQIPKL 1146
GD R ++ +D+L Q+ L
Sbjct: 925 GDFVRCSKQLLDVLRQLACL 944
>gi|336178159|ref|YP_004583534.1| DEAD/DEAH box helicase [Frankia symbiont of Datisca glomerata]
gi|334859139|gb|AEH09613.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca
glomerata]
Length = 934
Score = 330 bits (847), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 224/617 (36%), Positives = 304/617 (49%), Gaps = 55/617 (8%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
Y F +D FQ + A G V+V+APT +GKT++ E AA +A +R FYTTP+KALS
Sbjct: 30 YPFGLDPFQIEACTALDAGEGVLVAAPTGAGKTVVGEFAAHLALARGQRCFYTTPIKALS 89
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+ + G + VGLLTGD+ N +A +++MTTE+LRNMLY + L +
Sbjct: 90 NQKYTDLVARHGADAVGLLTGDTTRNPDAPVIVMTTEVLRNMLY---AQPAGRERLDRLA 146
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELIT 335
+V+DEVHYL+D RG VWEE+II+ P VQ++ LSATV+NA+E A W+ + G T ++
Sbjct: 147 FVVMDEVHYLADRQRGAVWEEVIIHLPAYVQLVSLSATVSNAEEFADWLITVRGHTRVVV 206
Query: 336 SSRRPVPLTWYFSTKTALL------PLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
S RPVPL + L PL + H R V P +R
Sbjct: 207 SEHRPVPLWQHVLADRQLHDLFVAGPLAPDGAPHTQR-----------DAVAPETSAAAR 255
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R + ++ + + R VP + + HL +LPAI F+F
Sbjct: 256 PRINPDLIRLSRQDSRRPPRPRGRGGAAAAPRERPWVPSRPEVVRHLDRAGLLPAITFVF 315
Query: 450 NRRGCDAAVQYLEDCNL---LDECEMSEVELALKRFRILYPDAVREPA----IKGLLKGV 502
+R GCDAAV L E S E R + D +R + GL G+
Sbjct: 316 SRAGCDAAVSACVRAGLRLTTTEERQSIREYVRARTASIPADDLRVLGYWEWLDGLECGI 375
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
AAHHAG LP +K +EELF RGLV+ VFATETLA GINMPART VL LSK R +
Sbjct: 376 AAHHAGMLPTFKEVVEELFVRGLVRAVFATETLALGINMPARTVVLERLSKFNGETRADI 435
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
T E Q+ GRAGRRGID GH V++ P L A PL S F SY M +N
Sbjct: 436 TPGEYTQLTGRAGRRGIDIEGHAVVLWQPGLDPVALAGLASARTYPLRSSFRPSYNMAVN 495
Query: 623 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKET 682
L+ + GR+ EAR ++E SF + ++ ++ +
Sbjct: 496 LVG-----------------RLGRT--EARSVLESSFAQFQADRAVVGLARQVRRNSGAL 536
Query: 683 DVLTSE-------ISDDAIDRKSRRLLSEAAYKEMANLQ--EELKAEKRFRTELRRRMEL 733
D L +E +S+ A R+ R A +E AN + E L+A R R R+
Sbjct: 537 DELAAELTCEQGSVSEYARLREEIRAREAALSREGANRRRAEALEALSRLRVGDVVRVPA 596
Query: 734 KRFSALKDILKDFENGH 750
R S L +L NG+
Sbjct: 597 GRRSGLAVVLDPGVNGY 613
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 86/189 (45%), Gaps = 7/189 (3%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
++ +L+ + L +RIE + K F R+ + L +T + +G + +
Sbjct: 719 DRHAKLRRETDTLQRRIENRTNTVAKIFDRVCAALETLDYLRGDT--VTDVGALLSRVYT 776
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E +L +A LR+ + L PA LAA ++LV E R + ++ + + +
Sbjct: 777 EQDLLVAECLRDGVWEGLSPAALAAAVSTLVYE---PRGEETAATKTPGDPGLRDALTAT 833
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALD--DGDLARLLR 1134
+++ HG++ + F+ + WASG + +++ D LD GD R +R
Sbjct: 834 ARIAGRLRDVEAAHGLDFLRPPEPGFAWVAFGWASGQSLEKVLTDSGLDLTAGDFVRWMR 893
Query: 1135 RTIDLLAQI 1143
+ IDLL QI
Sbjct: 894 QLIDLLDQI 902
>gi|256832524|ref|YP_003161251.1| DEAD/DEAH box helicase [Jonesia denitrificans DSM 20603]
gi|256686055|gb|ACV08948.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
20603]
Length = 950
Score = 330 bits (846), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 192/494 (38%), Positives = 276/494 (55%), Gaps = 52/494 (10%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ A+ DF +D+FQ + E +G V+V+APT +GKT++ E A + R+ FYT
Sbjct: 46 LSHFATTLDFPLDEFQHQACEHLEKGDGVLVAAPTGAGKTIVGEFAVHLALQQHRKAFYT 105
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + + G +NVGLLTGD+ IN EA I++MTTE+LRNM+Y +
Sbjct: 106 TPIKALSNQKFHDLQRVHGPHNVGLLTGDATINGEAPIVVMTTEVLRNMIY------AQS 159
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ L +V +++DEVHYL+D RG VWEE+II+ + VQ++ LSATV+NA+E W+ +
Sbjct: 160 TTLDNVGYVIMDEVHYLADRFRGAVWEEVIIHLDRSVQLVSLSATVSNAEEFGDWLAAVR 219
Query: 329 GKTELITSSRRPVPLTWYFSTKT---ALLPLLDEKGKHMNRKLSLNYLQLST---SEVKP 382
G T +I S RRPVPL + T+ + L+D ++ ++ + ++
Sbjct: 220 GSTAVIVSERRPVPLWQHVITQGRSDSPGGLIDLYAHTVDPTDPGPTPPINPDLLNTMRR 279
Query: 383 YKDGGSR--RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 440
+D G R RR +H+ RR P + L D
Sbjct: 280 GRDSGPRQPRRGRPQHSG-----------------------RRG--PPRFAVINELAEAD 314
Query: 441 MLPAIWFIFNRRGCDAAVQYLEDC-----NLLDECEMSEVELALK-RFRILYPDAVR--- 491
+LPAI+FIF+R GC+AAV E C L E + ++ + ++ R + P+ +
Sbjct: 315 LLPAIYFIFSRAGCNAAV---EQCLATGITLTTETQARQIRIIVESRVASVPPEDLSVLG 371
Query: 492 -EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
+ GL +G+AAHHAG LP++K +EELF RGL+KVVFATETLA GINMPART VL
Sbjct: 372 FHGWLDGLTRGIAAHHAGMLPLFKEVVEELFSRGLIKVVFATETLALGINMPARTVVLEK 431
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 610
L K + + +T E Q+ GRAGRRGID GH V+V +L PL
Sbjct: 432 LVKWNGTAHVDMTPGEYTQLTGRAGRRGIDVEGHAVVVDHVGLDPMALVRLASRRTYPLR 491
Query: 611 SQFTASYGMVLNLL 624
S F+ +Y M +NL+
Sbjct: 492 SSFSPTYNMAVNLV 505
Score = 42.0 bits (97), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 4/190 (2%)
Query: 962 LKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQ--VIFPLGETAAAIRGENE 1019
L+ + L RI++ S K F +I V+ + ++ N V+ G T I EN+
Sbjct: 738 LRREHEGLLARIDRKTGSIAKVFDKICRVLDQYGYVERNGDHYVVTEQGRTLQRIYAEND 797
Query: 1020 LWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 1079
L +A L + + L AQLA ++ V + + S P+ + I +
Sbjct: 798 LLIAECLTHGVWKGLDAAQLAGAVSAAVYQA-RGEEHAEPSIPGGPTGKLGGSIEKMAAM 856
Query: 1080 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 1139
+ EL++ G+E LD+ + AW G + ++ L GD R ++ +D
Sbjct: 857 WGTLTELEDSLGLEETGDLDAGLVWAIHAWTRGRSLDAVLDQSELTAGDFVRWAKQILDA 916
Query: 1140 LAQIPKL-PD 1148
L I + PD
Sbjct: 917 LDHIAHVAPD 926
>gi|305681301|ref|ZP_07404108.1| DEAD/DEAH box helicase [Corynebacterium matruchotii ATCC 14266]
gi|305659506|gb|EFM49006.1| DEAD/DEAH box helicase [Corynebacterium matruchotii ATCC 14266]
Length = 905
Score = 330 bits (846), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 210/613 (34%), Positives = 311/613 (50%), Gaps = 78/613 (12%)
Query: 147 IDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIF 206
+ +DE A+ F +D+FQ + +A V+V APT +GKT+I E A ++ + F
Sbjct: 1 MHLDEFAAHLKFPLDEFQHQACQAVENDHGVLVCAPTGAGKTIIGEFAVSLALSRGTKCF 60
Query: 207 YTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVS 266
YTTP+KALSNQK+ + G +GLLTGD+ IN A IL+MTTE+LRNM+Y
Sbjct: 61 YTTPIKALSNQKYHDLVAAHGPETIGLLTGDTTINHNADILVMTTEVLRNMIY------- 113
Query: 267 SESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325
++S FD + +V+DE+HYLSD +RG+VWEEII+ ++II LSATV+N++E W+
Sbjct: 114 AQSPTFDRLTHVVMDEIHYLSDKTRGSVWEEIILGLHDSIKIIGLSATVSNSEEFGHWLT 173
Query: 326 QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
+ G T++I + RPVPL + T L PL + +N +L+ + +L + Y+D
Sbjct: 174 TVRGNTDIIVTDHRPVPLNQWMLVSTTLHPLFEPNTTTLNHQLASHINKLEHT----YQD 229
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
R N N+ Q K + + R +V + L + +MLPAI
Sbjct: 230 NHPTFRTR----STNPNHTT------QPPKPNYRPLGRPEVTTI------LAANNMLPAI 273
Query: 446 WFIFNRRGCDAA-------------------VQYLEDCNLLDECEMSEVELALKRFRILY 486
FIF+R GCD+A ++++ D N+ E L + +R
Sbjct: 274 TFIFSRIGCDSALAQCLRSRINLTTPEETNRIKHIIDTNITTIPEEDLKVLGYRNWR--- 330
Query: 487 PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
L +G AAHHAG LP ++ +EELF GL+KVVFATETLA GINMPART
Sbjct: 331 ---------TALTRGFAAHHAGMLPAFRHIVEELFVNGLLKVVFATETLALGINMPARTV 381
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606
+L L K G + LT + Q+ GRAGRRGID G+ V+ +P ++ L
Sbjct: 382 ILEKLVKFDGEGHVDLTPGQYTQLTGRAGRRGIDVLGNAVVQWSPAMDPQQVANLASTRT 441
Query: 607 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSN 666
PLVS FT Y M +NLL K M A L+E SF + +
Sbjct: 442 YPLVSTFTPGYNMSVNLL---KTM----------------GFTAAHHLLEMSFAQFQANK 482
Query: 667 VMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTE 726
++ ++ K ++ L ++ ++ R+ A + E LQ +L E+R +
Sbjct: 483 SIVGHAHQVEKAEQRVQELEQQLEEELAARQVPSEQPLAEFLEYMQLQRDLSLEERNAKK 542
Query: 727 LRRRMELKRFSAL 739
LR R + +A+
Sbjct: 543 LRIRQRREAVTAV 555
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 86/211 (40%), Gaps = 14/211 (6%)
Query: 945 YKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL-----DI 999
Y + VD + I R++ +L ++ + KEF RI ++ E + D
Sbjct: 672 YWQQVDDLTQIGHDIIRVRTEVDKLHATVDASVDTLGKEFDRILGLLAELDYVEYVDGDR 731
Query: 1000 NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNN 1059
N + GE A I E +L +A LR I L PA+LA V + E + +
Sbjct: 732 NNPRVSEEGERLALIHNECDLLVAQCLRRGIWDGLDPAELAGVVSLCTFENRRETRGEPI 791
Query: 1060 SSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM 1119
+ + + N I + +E S + +H + DS F+ + WA+G M
Sbjct: 792 GATDAMADAMDNTIRLWEELHSD----ERRHQLPETRYPDSGFALAIHQWAAGAPLGYCM 847
Query: 1120 MDCA-----LDDGDLARLLRRTIDLLAQIPK 1145
A L GD R R+ +DLL Q+ K
Sbjct: 848 AAAAECGAELTPGDFVRQARQVVDLLEQVRK 878
>gi|297626525|ref|YP_003688288.1| Superfamily II RNA helicase [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922290|emb|CBL56862.1| Superfamily II RNA helicase [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 933
Score = 330 bits (845), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 221/618 (35%), Positives = 315/618 (50%), Gaps = 63/618 (10%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+ A YDF D FQ + + G V+V+APT SGKT+I E A V R FYTTP
Sbjct: 20 DFAGHYDFSFDSFQVQACGSIDAGHGVLVAAPTGSGKTVIGEYACFLAVREHSRCFYTTP 79
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+ + G +NVGLLTGD IN +A I++MTTE+LRNMLY VS +
Sbjct: 80 IKALSNQKYHDLVAAHGADNVGLLTGDVTINGDAPIVVMTTEVLRNMLY----AVSPD-- 133
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +VLDEVHYLSD RG VWEE+I+ + VQ++ LSATV+NA+E W+ + G
Sbjct: 134 LETLSYVVLDEVHYLSDRFRGAVWEEVILGLAESVQVVALSATVSNAEEFGDWLDTVRGN 193
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
+++ +RPVPL + + L G+ +N KL+ L+ E + +D
Sbjct: 194 VDIVVWEKRPVPLYQHVMADHEIYDLFGSDGRSVNPKLT----ALARQESRTTRDD---- 245
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAI--RRSQ----VPQVIDTLWHLRSRDMLPA 444
+ R ++G Q S + + RR Q P + L+ ++PA
Sbjct: 246 -SRRPRGRNGRGKRRVTYGSGQFGGASSSRVGDRRHQSHGLTPSRAMVVTALQKAGLVPA 304
Query: 445 IWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPA-----IKG 497
I+F+F+R+GCDAAV+ L L D E +++ +R + R ++
Sbjct: 305 IYFVFSRQGCDAAVRQLLRSGVRLTDRTERAQLRELAQREGASLSETDRAALGWNDFVEA 364
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
L +G+AAHHAG LP++K+ +EE F RG +KVVFATETLA GINMPART VL L K
Sbjct: 365 LSRGIAAHHAGLLPVFKAIVEEGFTRGWLKVVFATETLALGINMPARTVVLERLVKYNGE 424
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
+T E Q+ GRAGRRGID GH VVL QT + L PL S F +
Sbjct: 425 THADITPGEYTQLTGRAGRRGIDTEGHAVVLWQTGMD-PRAVAGLASKRTYPLRSSFAPN 483
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELC 676
Y M +NL+ AGR + AR L+EQSF + ++AA +
Sbjct: 484 YNMAVNLV-----------------RSAGR--DRARSLLEQSFAQFQADRKVVAAARQGV 524
Query: 677 KIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRF 736
+ + D + S + A L++E++ +R + LR++ +
Sbjct: 525 AVAGQI-----------ADAWQQAHCSRGDFASYARLRDEVRELEREQARLRKQ---DQR 570
Query: 737 SALKDILKDFENGHLPFL 754
+A+ D L E G + L
Sbjct: 571 AAVLDGLSRLEPGDVIHL 588
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 82/195 (42%), Gaps = 11/195 (5%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI-NTQVIFPLGETAAAIR 1015
E+ RL+ + +R S +F RI V+ LD + + P G I
Sbjct: 712 ERALRLERENNVTQRRAADRRNSIAAQFDRICAVLDALGYLDPSHPDEVTPAGTMLTRIY 771
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 1075
E +L +A +R K+ +L QLAAV +++V E + P T
Sbjct: 772 SELDLVVAQAIREKVFAELNGPQLAAVLSTMVYEARAT----DTGGHRMPDDTSARAERA 827
Query: 1076 LDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARL 1132
L RS + E+ + H VE LD F+ WASG + +++ + L GD R
Sbjct: 828 L---RSVWREVGLVERDHRVERQRDLDIGFADAAAQWASGASLADILGEFGLTAGDFVRW 884
Query: 1133 LRRTIDLLAQIPKLP 1147
R+ +DL +QI P
Sbjct: 885 TRQVVDLASQISAAP 899
>gi|395237416|ref|ZP_10415490.1| ATP-dependent RNA helicase HelY [Turicella otitidis ATCC 51513]
gi|423350696|ref|ZP_17328348.1| hypothetical protein HMPREF9719_00643 [Turicella otitidis ATCC
51513]
gi|394487317|emb|CCI83578.1| ATP-dependent RNA helicase HelY [Turicella otitidis ATCC 51513]
gi|404387297|gb|EJZ82418.1| hypothetical protein HMPREF9719_00643 [Turicella otitidis ATCC
51513]
Length = 915
Score = 330 bits (845), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 190/497 (38%), Positives = 270/497 (54%), Gaps = 45/497 (9%)
Query: 146 MIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205
M + E + +D FQR A G V+V APT +GKT++ E A +A+ +
Sbjct: 1 MDHLPEFERRQSYPLDDFQRRGARALEEGRGVLVCAPTGAGKTVVGEFAVSLALAHGTKC 60
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
FYTTP+KALSNQKF +F++T+G++ +GLLTGD +IN +A +++MTTE+LRNMLY
Sbjct: 61 FYTTPIKALSNQKFHDFQDTYGEDAIGLLTGDQSINADADVVVMTTEVLRNMLY------ 114
Query: 266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325
+S L + +V+DE+HYL+D SRG VWEE+I+ P+ V ++ LSATV+N++E W+
Sbjct: 115 ASSPALEHLSYVVMDEIHYLADRSRGPVWEEVILNLPESVSVVGLSATVSNSEEFGRWLN 174
Query: 326 QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
+ G T++I + RPVPL + T + P+ + N +LS V+
Sbjct: 175 AVRGDTDVIVAEDRPVPLNQWMLVGTRVHPMFEPGTTDANGVGG----ELSEELVRAVAK 230
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
G+ R A G+H ++ + + P+++ L MLPAI
Sbjct: 231 AGASIDGQRSEARYERRG-----GKHNPRRDRARGAKPAGRPEIVRALEQA---SMLPAI 282
Query: 446 WFIFNRRGCDAAV--------------QYLEDCNLLDE--CEMSEVELALKRFRILYPDA 489
+F+F+R GCD A+ + E ++DE + E +L + FR
Sbjct: 283 FFVFSRSGCDKALFQCARSRLSLTTKAEAAEIGRIVDEGVAGIDEADLEVLGFR------ 336
Query: 490 VREPAIKG-LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
A KG L++G AAHHAG LP ++ +EELF +GLV+VVFATETLA GINMPAR+ VL
Sbjct: 337 ----AWKGALMRGFAAHHAGLLPAFRHIVEELFVKGLVRVVFATETLALGINMPARSVVL 392
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
L K LT E Q+ GRAGRRGID GH V+ +P E L P
Sbjct: 393 ERLVKFNGETHADLTPAEYTQLTGRAGRRGIDEVGHAVVQWSPGLDVEAAAGLASTRTYP 452
Query: 609 LVSQFTASYGMVLNLLA 625
LVS F Y M +NLL
Sbjct: 453 LVSTFQPGYNMSINLLG 469
>gi|302518098|ref|ZP_07270440.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
gi|302426993|gb|EFK98808.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
Length = 946
Score = 330 bits (845), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 204/516 (39%), Positives = 280/516 (54%), Gaps = 53/516 (10%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+Y+F +D FQ S +A G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 42 MYEFGLDPFQIESCQALEAGKGVLVAAPTGSGKTIVGEFAVHLALRQGKKCFYTTPIKAL 101
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQKF + + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 102 SNQKFGDLSKRYGADKVGLLTGDNSVNADAPVVVMTTEVLRNMLY------AGSPALTGL 155
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE++
Sbjct: 156 GYVVMDEVHYLSDRIRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVV 215
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
S RPVPL + + L +E G R ++ + L+++ E GG RR
Sbjct: 216 VSEHRPVPLFQHVLAGRRMYDLFEEGGGR-KRAVNPDLLRMARMEAGRTGYGGKRRGREA 274
Query: 395 KHADMNSNNIVT-SFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453
T + G+ P+VID L S +LPAI FIF+R G
Sbjct: 275 DRERERRQRSRTWTPGR----------------PEVID---RLDSEGLLPAITFIFSRAG 315
Query: 454 CDAAVQ--YLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPA----IKGLLKGVAAHH 506
C+AAVQ L DE E V E+ +R + P+ + ++GL +G+AAHH
Sbjct: 316 CEAAVQQCLFAGLRLNDESERLAVREIVEERTASIPPEDLHVLGYFEFLEGLERGIAAHH 375
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
AG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T E
Sbjct: 376 AGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITPGE 435
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
Q+ GRAGRRGID GH V++ E L PL S F SY M +NL+
Sbjct: 436 YTQLTGRAGRRGIDVEGHAVVLWQRAMSPEHLAGLAGTRTYPLRSSFRPSYNMAVNLVQ- 494
Query: 627 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
Q GR +R+L+E SF +
Sbjct: 495 ----------------QFGR--HRSRELLETSFAQF 512
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 12/193 (6%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 1015
E+ RL +K+L +RIE + + F RI ++ E LD + + + G A +
Sbjct: 727 ERYHRLLRDTKQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGEQVTEHGRRLARLY 783
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 1075
GE +L + LR + L PA+LAA ++LV E R + + PS V + +
Sbjct: 784 GELDLLASECLRAGVWEGLGPAELAACASALVYES---RSGDDAGAPKVPSGKVTSALTE 840
Query: 1076 LDEHRSSFLELQEKHGVEIPCCL-----DSQFSGMVEAWASGLTWREMMMDCALDDGDLA 1130
+ ++E G+ + D F+ WASG E++ + + GD
Sbjct: 841 MVRLWGRLDAVEEDFGISRTEGVGQREPDLGFAWAAYEWASGKGLDEVLREAEMPAGDFV 900
Query: 1131 RLLRRTIDLLAQI 1143
R ++ ID+L QI
Sbjct: 901 RWTKQIIDVLGQI 913
>gi|409358499|ref|ZP_11236862.1| ATP-dependent helicase [Dietzia alimentaria 72]
Length = 886
Score = 329 bits (844), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 204/545 (37%), Positives = 281/545 (51%), Gaps = 75/545 (13%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F D FQ S A G +++VSAPT SGKTL+ E AA ++ R FYTTP+KALSNQ
Sbjct: 23 FTPDPFQIESFAALDAGRNLLVSAPTGSGKTLVGEYAAHRALSGGGRCFYTTPIKALSNQ 82
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
KFR+FR+ FG NVGLLTGD +I+ +A I++MTTE+LRNM+Y L D+D +
Sbjct: 83 KFRQFRQRFGTENVGLLTGDHSIDADAPIVVMTTEVLRNMVY------GGTYALHDLDCV 136
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DE+HYL D SRG VWEEII+ ++++ LSAT++N DEL WI +I G T ++ S
Sbjct: 137 VMDEIHYLGDRSRGVVWEEIILTLDPAIRLVGLSATLSNTDELGDWITEIRGDTAVVISD 196
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RRPVPL T L+P V+ D R R
Sbjct: 197 RRPVPLAHMLYTDGDLVP------------------------VRAAADNRRRVRG----- 227
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAA 457
G H + A R+Q + D + HL +LPAI+F+F+R GCD A
Sbjct: 228 -----------GYHD---ERVAARPRAQWARRQDVIEHLDDAHLLPAIYFVFSRAGCDGA 273
Query: 458 VQYLEDCNL-LDECE-----MSEVELALKRFRILYPDAVREPAIK-GLLKGVAAHHAGCL 510
V + L L E S V+ A DA+ + + GL+ G+AAHHAG L
Sbjct: 274 VSQMRRARLRLTTGEESRRIASHVDEACAAVPQHDLDALDYSSFRAGLVSGIAAHHAGML 333
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
P++++ +EELF GL+KVVFATETLA GI+MPAR VL +K LT+ E Q+
Sbjct: 334 PLFRTVVEELFSAGLIKVVFATETLALGIHMPARAVVLEKTTKFNGDTHAMLTAAEYSQI 393
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 630
GRAGRRGID +G V++ P + L+ PL S F Y M +NL+
Sbjct: 394 TGRAGRRGIDTKGTAVVLDQPDLDLDALSALVDTPRFPLYSAFAPDYSMAVNLV------ 447
Query: 631 HLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS 690
R +EEA L+ +SF + +++ + + E D + + +
Sbjct: 448 -------------EQRGVEEATSLIGRSFAQFQTDRTLVSRSRAIERRADERDRMRASLE 494
Query: 691 DDAID 695
+ D
Sbjct: 495 EAGGD 499
Score = 48.1 bits (113), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 27/225 (12%)
Query: 949 VDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL- 1007
+D + E+ R A +T +E S + F RI ++ L+ + +
Sbjct: 661 IDKLARLHERWARAHADVVTMTGEVESDSDSLARRFRRIVKLLEHLGYLEESDGSLRATE 720
Query: 1008 -GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPS 1066
G A + E +L++A LR + L PA LAAV A++V+ ++ S++ PS
Sbjct: 721 AGNLLAGVHTEQDLFVAECLRRGVWRGLDPAGLAAVIATVVAHP------RSESAVRAPS 774
Query: 1067 TTVINVINVLDEHR---SSFLELQEKHGVEIPCCLDSQFSGMVEAWASG--------LTW 1115
+ LDE + +++ H + LD + ++ W SG +W
Sbjct: 775 DETLRA--ALDETERVATDVAGVEQAHRLPSTPDLDPGLAPVLHHWVSGGALASILAASW 832
Query: 1116 REMMMDCALDDGDLARLLRRTIDLLAQIPKL--PDVDQRLQKNAV 1158
+E L GD R R +DLLAQ+ ++ P+V R ++AV
Sbjct: 833 QE---GVELTAGDFVRSARLVMDLLAQVAQVAEPEV-ARTARSAV 873
>gi|390566130|ref|ZP_10246630.1| DEAD/DEAH box helicase domain protein [Nitrolancetus hollandicus
Lb]
gi|390170623|emb|CCF85974.1| DEAD/DEAH box helicase domain protein [Nitrolancetus hollandicus
Lb]
Length = 956
Score = 329 bits (844), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 196/513 (38%), Positives = 283/513 (55%), Gaps = 51/513 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + ++ Y F +D FQR +I+ F+ G+SV+V+APT +GKT++AE + R+ YT
Sbjct: 11 IAQFSAYYPFELDPFQREAIDLFMDGNSVMVAAPTGTGKTVVAEFGVYESFRRGGRVMYT 70
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+ R +G+N VGLLTGD + N A I++MTTE+LRNML Q+ + +
Sbjct: 71 SPIKALSNQKFRDLRAIYGEN-VGLLTGDVSENPHAPIVVMTTEVLRNMLLQTPWELDA- 128
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
VD ++ DEVHY++D RGT WEE II CP+ VQ+ICLSATV+NA E+A WI +
Sbjct: 129 -----VDCVIFDEVHYIADPERGTTWEEAIILCPEHVQLICLSATVSNAQEIADWISRTQ 183
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
LIT R VPL Y+ L ++D G+ + P+ G
Sbjct: 184 RPIRLITHLERAVPLELYYYLDQELNLVIDHSGQQVADF--------------PHTGGEV 229
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
RR+ R+ + Q Q + PQ + + L R MLPAI+F+
Sbjct: 230 RRQMFRR-----------TLTQEQRREAE------QAEPQPWEIIETLLGRGMLPAIYFL 272
Query: 449 FNRRGCDAAVQYLEDCNL---LDECEMSEVELALKRF-RILYPDAVREPAIKGLL----K 500
F+RR C+ Q L L D + +E ++ + L P+ ++ ++ K
Sbjct: 273 FSRRDCEEFAQRLSVMRLGLLKDPGAVQRIEAVIENYLGGLRPEDRELEQVQVIVSLARK 332
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+ HHAG LPI K +E LF +GL++VVFATETLA G+NMPART V+ +SK R
Sbjct: 333 GIGFHHAGLLPILKQLVETLFGQGLMQVVFATETLALGVNMPARTVVIGRMSKWDGRRRR 392
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
L NE QMAGRAGRRG+D +G+V++ +P+ E ++ +EP+ S F Y V
Sbjct: 393 PLIPNEFQQMAGRAGRRGMDIKGNVIVPYSPWISFHETLDIVTGELEPVRSAFAIRYNTV 452
Query: 621 LNLL---AGAKVMHLSNESDDMKALQAGRSLEE 650
LNL G +V + +S + Q R + E
Sbjct: 453 LNLWDPPNGNRVRQILQQS--LTQFQTARRVRE 483
>gi|213965568|ref|ZP_03393762.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
gi|213951727|gb|EEB63115.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
Length = 928
Score = 329 bits (844), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 201/564 (35%), Positives = 290/564 (51%), Gaps = 72/564 (12%)
Query: 146 MIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205
M + + S DF +D FQ + ++ G VVV APT +GKT++ E A A + +
Sbjct: 1 MTLLGDFVSQQDFDLDDFQLRACQSIEAGRGVVVCAPTGAGKTIVGEFAIYAALERGGKC 60
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
FYTTP+KALSNQK+ + E +G++ VGLLTGD++IN +A I++MTTE+LRNM+Y
Sbjct: 61 FYTTPIKALSNQKYHDLVEDYGEDRVGLLTGDTSINGDADIVVMTTEVLRNMIY------ 114
Query: 266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325
++ L + +V+DE+HYL+D RG VWEE+I+ + V +I LSATV+N++E W+
Sbjct: 115 ANSPTLKKLTHVVMDEIHYLADRERGAVWEEVILNLDQSVAVIGLSATVSNSEEFGRWLS 174
Query: 326 QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
+ G T++I + RPVPL + L PL + K +N+ L L+ Y D
Sbjct: 175 TVRGHTDVIVTDLRPVPLHQHMLVGNRLYPLFEAKSDKVNQDL----LEACRRAEFGYGD 230
Query: 386 GGSRRR-NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
G+R R +KH + GQ R+ + P+ D + L + +MLPA
Sbjct: 231 AGARERYQYKKHKGGGRSYSWGDKGQ-----------RKFRPPKRGDVIRMLGAMNMLPA 279
Query: 445 IWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVE-----------------LALKRFRIL 485
I FIF+R GC+ A+ + L D E + L R+R +
Sbjct: 280 IVFIFSRAGCEGALAQVGATRAELTDRDEQERIAKIIDDGVAHIPKEDLQVLGFLRWRRI 339
Query: 486 YPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
L++G AAHHAG LP ++ +EELF GLVKVVFATETLA GINMPART
Sbjct: 340 ------------LIRGFAAHHAGMLPAFRHIVEELFNEGLVKVVFATETLALGINMPART 387
Query: 546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 605
VL L K + LT + QM GRAGRRGID G+ V+ P + L
Sbjct: 388 VVLEKLVKFNGEAHVDLTPGQYTQMTGRAGRRGIDTVGNAVVQWAPAMDPKAVAGLASTR 447
Query: 606 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665
PL+S F SY M +NLL E +++++E+SF +
Sbjct: 448 TYPLISTFAPSYNMSVNLLQTL-------------------GYEGSKRVMERSFAQFQAD 488
Query: 666 NVMLAAKDELCKIQKETDVLTSEI 689
++ EL K ++E L +E+
Sbjct: 489 GDIVGVAAELSKAKQEAAALRAEL 512
Score = 47.8 bits (112), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 12/205 (5%)
Query: 949 VDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHE---TRALDINTQVIF 1005
V+T+ + +++ +A +L KR++ + + F R+ ++ + L+ I
Sbjct: 701 VETMARHADTLRQAEAHVAKLQKRVDSASDTLARTFDRMLQLLTQMDYVEWLEGAEPTIT 760
Query: 1006 PLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEP 1065
G A I ++L +A LR I DL PA+LA +SLV E K +
Sbjct: 761 EEGLRLAQIHNGSDLLVATCLRRGIWDDLDPAELAGAVSSLVFENRKASQGSDEVPTEPL 820
Query: 1066 STTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-- 1123
+ + N + +E E + ++ + + D F+ + W +G + A
Sbjct: 821 AKALGNTYRIWEE----LSEDERRYRLPVTDLPDMAFATAIHQWTAGAPLGYCLQAAAES 876
Query: 1124 ---LDDGDLARLLRRTIDLLAQIPK 1145
L GD R R+ IDLL QI K
Sbjct: 877 GAELTPGDFVRWCRQVIDLLQQIKK 901
>gi|452912070|ref|ZP_21960727.1| putative helicase [Kocuria palustris PEL]
gi|452832771|gb|EME35595.1| putative helicase [Kocuria palustris PEL]
Length = 957
Score = 329 bits (844), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 202/513 (39%), Positives = 274/513 (53%), Gaps = 57/513 (11%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ DF +D FQ A G V+V+APT +GKT++ E A + ++ FYTTP+
Sbjct: 17 FAASLDFELDDFQIEGCRALEEGRGVLVAAPTGAGKTVVGEFAVDLALHRGQKAFYTTPI 76
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK +F FG VGLLTGD++IN EA +++MTTE+LRNMLY + L
Sbjct: 77 KALSNQKHSDFVRRFGAERVGLLTGDTSINSEADVVVMTTEVLRNMLY------ADSPTL 130
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
++ +V+DEVHYL+D RG VWEE+II+ P VQ+ CLSATV+NA+E W+G + G+T
Sbjct: 131 SNLGFVVMDEVHYLADRFRGAVWEEVIIHLPPHVQMACLSATVSNAEEFGDWLGTVRGET 190
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLL--------DEKGKHMNR---------------KL 368
+++ S RPVPL + T L+ L EK + + R
Sbjct: 191 DVVVSEHRPVPLWQHMQVGTELMDLFVTDTVEQAAEKAERLERAREAGLEARIEPPAVNP 250
Query: 369 SLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ 428
L +L S + + G SR R +K+ + G+ + +I R P
Sbjct: 251 ELLHLARSQASGRRGPGGRSRERMRQKNGRGRGGHGRDDRGRGSGRDDRGGSIPRISRPH 310
Query: 429 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECE--------------M 472
+ L L+S +LPAI FIF+R GCD AV D L E E +
Sbjct: 311 L---LRQLQSEGLLPAITFIFSRAGCDDAVTQCLAADLQLTTEAERRTIRAVTAEAAASL 367
Query: 473 SEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 532
++V+L + FR GLL GVAAHHAG LP++K +EELF +GL+K VFAT
Sbjct: 368 NDVDLDVLGFRQWR---------DGLLHGVAAHHAGLLPLFKEVVEELFTQGLIKAVFAT 418
Query: 533 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592
ETLA GINMPAR+ VL L K R+ +T E Q+ GRAGRRGID GH V++ P
Sbjct: 419 ETLALGINMPARSVVLERLDKFNGEARVDITPGEYTQLTGRAGRRGIDVEGHAVVLWRPG 478
Query: 593 EGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
+ L PL S F +Y M +NL+A
Sbjct: 479 SDPQAVAGLASKRTYPLNSSFRPTYNMSVNLIA 511
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 17/218 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQ--VIFPLGETAAAI 1014
E+ +RL+ + RL ++++ + F RI++V+HE L+ + P G++ I
Sbjct: 736 ERWERLRRETDRLMRQLDGRTNAVAARFDRITSVLHELDYLERRDDELRLTPAGQSLRRI 795
Query: 1015 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSSIYEPSTT 1068
G+ +L LAM LR+ IL L PA +AAV + G + RL PS
Sbjct: 796 YGDRDLLLAMGLRDGILDGLDPASIAAVATVFTYQAKRQDAGARPRL---------PSAK 846
Query: 1069 VINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 1128
+ + H + +L+E+H V+ + G + WA G + R + D L GD
Sbjct: 847 IEQAVATAVTHWTRLTDLEEQHRVDQTAEPELGMVGPMHRWARGGSLRATLEDTELAAGD 906
Query: 1129 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
R ++ IDLL Q+ + +D + + A +++ R
Sbjct: 907 FVRWTKQVIDLLDQVASIRGLDAQTRTGCQRAVDLIRR 944
>gi|227495430|ref|ZP_03925746.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
gi|226830977|gb|EEH63360.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
Length = 934
Score = 329 bits (844), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 216/565 (38%), Positives = 306/565 (54%), Gaps = 76/565 (13%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ DF +D FQ +E+ G +V+V+APT +GKT++ E A ++ +R FYTTP+
Sbjct: 46 FAAELDFFLDDFQMQGMESVENGHNVLVAAPTGAGKTMVGEFALHMALSCGQRAFYTTPI 105
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+RE E +GD VGLLTGD AIN +A +++MTTE+ RNM+YQ L
Sbjct: 106 KALSNQKYRELCEKYGDEQVGLLTGDVAINGDAPLIVMTTEVARNMIYQG-------RDL 158
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
D+ IVLDEVHYL+D RG VWEE+II+ P+ VQI+ LSATV+NA+E WI +
Sbjct: 159 TDLRAIVLDEVHYLADRFRGPVWEEVIIHAPQHVQIVALSATVSNAEEFGNWIDSVRSGC 218
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDE-KGKHMNRKLSLNYLQLSTSEVKPYKD----- 385
++I S +RPVPL + ++ L E + K +N +L + + ++
Sbjct: 219 DIIVSEKRPVPLYQHMMVGRDIIDLYAEDETKFINPQLRTAISKQRGITSRNFRQNERHL 278
Query: 386 -GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
GG R R+++K R++ P+V+ +L R +LPA
Sbjct: 279 AGGRRMRDTQKRP------------------------RKTTRPEVVISLDRAR---LLPA 311
Query: 445 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG------- 497
I+FIF+R C+ AV+ + + E K+ R + +A+ A++G
Sbjct: 312 IYFIFSRSACEDAVEQIIGAGITLTSEKER-----KQIRKIVDEALY--ALQGEDLSVLR 364
Query: 498 -------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
L GVAAHHAG LP K +E+LF GLVKVVFATETLA GINMPART VL +
Sbjct: 365 INTWQMALEAGVAAHHAGLLPFMKEVVEKLFTLGLVKVVFATETLALGINMPARTVVLEA 424
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 610
L K ++ L++ E Q+ GRAGRRGID GH ++V E L PLV
Sbjct: 425 LRKWNGIAKVPLSAGEYTQLTGRAGRRGIDVEGHALVVWQDDHEPELVASLASKRTYPLV 484
Query: 611 SQFTASYGMVLNL-----LAGAK-VMH--LSNESDDMK----ALQAGRSLEEARKLVEQS 658
S F +Y MV NL LA A+ VM + D K A+ A R+ ++ KL S
Sbjct: 485 SAFRPTYNMVANLASTGDLASAREVMDECFAQFQADRKVVGLAVDAKRAQQQMDKLAP-S 543
Query: 659 FGNYVGSNV-MLAAKDELCKIQKET 682
++G + AA++EL +QK++
Sbjct: 544 VSCHLGDALEYFAAREELTFLQKQS 568
Score = 45.8 bits (107), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 14/228 (6%)
Query: 949 VDTVKFTEEKIKRLKARSK--RLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFP 1006
VD + ++ ++AR + +L ++E+ S K F +I V+ + L + +
Sbjct: 710 VDRDQHARNAVQWMRARREFEKLASQVEEQTSSVAKRFDKIVLVLEQLGCLHASD--LTD 767
Query: 1007 LGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNN--SSIYE 1064
G T AI GE +L +A+ L I DL AQLA+V ++ V E K +
Sbjct: 768 AGHTLRAIYGERDLVVALSLEAGIWDDLDEAQLASVVSACVFEPRKDHAPDPEIPEGAHG 827
Query: 1065 PSTTVINVIN--VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC 1122
P +N +LD +R+ + H L++ + W G + +
Sbjct: 828 PVGQALNATARIMLDINRA-----ESAHQATTSMPLETGLVNAMYWWVKGDSLASAVSSA 882
Query: 1123 ALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPIS 1170
L+ GD R ++TIDLL QI + + L A DA++ + R +S
Sbjct: 883 DLEAGDWVRWCKQTIDLLMQI-SVATRNSNLAWTARDAADAIRRSVVS 929
>gi|326773350|ref|ZP_08232633.1| ATP-dependent RNA helicase [Actinomyces viscosus C505]
gi|326636580|gb|EGE37483.1| ATP-dependent RNA helicase [Actinomyces viscosus C505]
Length = 986
Score = 329 bits (844), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 207/557 (37%), Positives = 286/557 (51%), Gaps = 75/557 (13%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
++ A YDF +D FQ + A RG V+V+APT +GKT++ E A +A + FY
Sbjct: 21 ELARFAQGYDFPLDPFQEEACGAVERGEGVLVAAPTGAGKTVVGEFAVHLGLARGLKTFY 80
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK+ + G + VGLLTGD+++N A +++MTTE+LRNMLY
Sbjct: 81 TTPIKALSNQKYLDLVARHGQDKVGLLTGDTSVNPHADVVVMTTEVLRNMLY-------- 132
Query: 268 ESGLFDVD---VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
SG D+D +V+DEVHYL+D RG VWEE+II+ P EVQ+I LSATV+NA+E W+
Sbjct: 133 -SGSRDLDRLGFVVMDEVHYLADRFRGPVWEEVIIHLPAEVQVISLSATVSNAEEFGDWL 191
Query: 325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 384
GQ+ G+T ++ S RPVPLT + LLPL + L+ + + E + +
Sbjct: 192 GQVRGRTAVVVSEERPVPLTQHMMVGRRLLPLYSHPAEAPEHSDQLDQSEQTEPERQAEQ 251
Query: 385 DG---------------------GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 423
G G +NS + S + + S A RR
Sbjct: 252 TGQPPLNPELLKAVKQARRAAASGGASKNSYRGGGGGSARGTQPW---KRSARGGRAPRR 308
Query: 424 SQ---------VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEM 472
+ P + + L +LPAI F+F+R GC+ AV + +L E E
Sbjct: 309 GEGGARTARLKPPSRLQVVTALEGARLLPAIVFVFSRAGCEQAVHQVVSAGVDLTTEAEA 368
Query: 473 SEVELALKRFRILYPDAVREPAIKG-------LLKGVAAHHAGCLPIWKSFIEELFQRGL 525
+ + ++R P V + + G L +GVAAHHAG LP++K +EELF GL
Sbjct: 369 ARIREVIERRTADIP--VSDLGVLGFHFWAHALERGVAAHHAGLLPVFKETVEELFSAGL 426
Query: 526 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 585
VKVV+ATETLA GINMPART VL SL K S + L+ E Q+ GRAGRRGID GH
Sbjct: 427 VKVVYATETLALGINMPARTVVLESLRKWNGSAHVTLSPGEYTQLTGRAGRRGIDVEGHA 486
Query: 586 VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAG 645
V++ L PLVS F +Y M +NLL M +
Sbjct: 487 VVLAADDVEPATVSSLASRRTYPLVSAFRPTYNMAVNLLERMPRMRV------------- 533
Query: 646 RSLEEARKLVEQSFGNY 662
R+++EQSF +
Sbjct: 534 ------REVLEQSFAQF 544
Score = 41.6 bits (96), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 84/227 (37%), Gaps = 38/227 (16%)
Query: 958 KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVI------------HETRALDINTQVIF 1005
K R K ++RL +RIE + + F + V+ H R L +
Sbjct: 755 KWSRAKTEAERLQRRIETRTGTIARLFDAVCEVLLELGYLRPVDRGHPERELRVTGA--- 811
Query: 1006 PLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE--------GIKVRLWK 1057
G+ A I E +L +A LR + DL A+LA ++ V E G+ V
Sbjct: 812 --GKVLARIYAERDLLIAECLRTGVFEDLSAAELAGALSACVYEPRLSAQSIGLPVAPGS 869
Query: 1058 NNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWRE 1117
V + I+ L+ S + G E +G V+AW G +
Sbjct: 870 RLGQCLRAQLGVSHRIHDLE----SLARIAASSGAE------PALAGAVQAWCDGAQLAD 919
Query: 1118 MMMDCALDDGDLARLLRRTIDLLAQIPKL---PDVDQRLQKNAVDAS 1161
++ L GD R ++ +D++ QI L PD + D S
Sbjct: 920 ILDATELTAGDFVRWCKQLLDVVGQIASLSPPPDATPEQARAVTDLS 966
>gi|318059086|ref|ZP_07977809.1| ATP-dependent RNA helicase [Streptomyces sp. SA3_actG]
gi|318075737|ref|ZP_07983069.1| ATP-dependent RNA helicase [Streptomyces sp. SA3_actF]
Length = 935
Score = 329 bits (844), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 204/516 (39%), Positives = 280/516 (54%), Gaps = 53/516 (10%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+Y+F +D FQ S +A G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 31 MYEFGLDPFQIESCQALEAGKGVLVAAPTGSGKTIVGEFAVHLALRQGKKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQKF + + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 91 SNQKFGDLSKRYGADKVGLLTGDNSVNADAPVVVMTTEVLRNMLY------AGSPALTGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE++
Sbjct: 145 GYVVMDEVHYLSDRIRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVV 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
S RPVPL + + L +E G R ++ + L+++ E GG RR
Sbjct: 205 VSEHRPVPLFQHVLAGRRMYDLFEEGGGR-KRAVNPDLLRMARMEAGRTGYGGKRRGREA 263
Query: 395 KHADMNSNNIVT-SFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453
T + G+ P+VID L S +LPAI FIF+R G
Sbjct: 264 DRERERRQRSRTWTPGR----------------PEVID---RLDSEGLLPAITFIFSRAG 304
Query: 454 CDAAVQ--YLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPA----IKGLLKGVAAHH 506
C+AAVQ L DE E V E+ +R + P+ + ++GL +G+AAHH
Sbjct: 305 CEAAVQQCLFAGLRLNDESERLAVREIVEERTASIPPEDLHVLGYFEFLEGLERGIAAHH 364
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
AG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T E
Sbjct: 365 AGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITPGE 424
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
Q+ GRAGRRGID GH V++ E L PL S F SY M +NL+
Sbjct: 425 YTQLTGRAGRRGIDVEGHAVVLWQRAMSPEHLAGLAGTRTYPLRSSFRPSYNMAVNLVQ- 483
Query: 627 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
Q GR +R+L+E SF +
Sbjct: 484 ----------------QFGR--HRSRELLETSFAQF 501
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 12/193 (6%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 1015
E+ RL +K+L +RIE + + F RI ++ E LD + + + G A +
Sbjct: 716 ERYHRLLRDTKQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGEQVTEHGRRLARLY 772
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 1075
GE +L + LR + L PA+LAA ++LV E R + + PS V + +
Sbjct: 773 GELDLLASECLRAGVWEGLGPAELAACASALVYES---RSGDDAGAPKVPSGKVTSALTE 829
Query: 1076 LDEHRSSFLELQEKHGVEIPCCL-----DSQFSGMVEAWASGLTWREMMMDCALDDGDLA 1130
+ ++E G+ + D F+ WASG E++ + + GD
Sbjct: 830 MVRLWGRLDAVEEDFGISRTEGVGQREPDLGFAWAAYEWASGKGLDEVLREAEMPAGDFV 889
Query: 1131 RLLRRTIDLLAQI 1143
R ++ ID+L QI
Sbjct: 890 RWTKQIIDVLGQI 902
>gi|397670670|ref|YP_006512205.1| DSHCT domain protein [Propionibacterium propionicum F0230a]
gi|395143370|gb|AFN47477.1| DSHCT domain protein [Propionibacterium propionicum F0230a]
Length = 914
Score = 329 bits (843), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 208/532 (39%), Positives = 290/532 (54%), Gaps = 55/532 (10%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V A++Y F +D +Q + EA GS V+V+APT +GKT++ E A + R FYT
Sbjct: 5 VQRFAALYSFPLDDYQIAGCEALASGSGVLVAAPTGAGKTVVGEFAVWLALETGTRCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + G + VGLLTGDS++N +AQ+++MTTE+LRNM+Y +S
Sbjct: 65 TPIKALSNQKYHDLVARHGADRVGLLTGDSSVNGDAQVVVMTTEVLRNMIY------ASS 118
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+GL ++ +V+DEVHYL+D RG VWEE+I+ VQI LSATV+N ++ W+ +
Sbjct: 119 TGLNNLGHVVMDEVHYLADRFRGAVWEEVILGLTPRVQITALSATVSNVEDFGDWLRTVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-----------EKGKHMNRKLSLNYLQLST 377
G E++ S RRPVPL T L+ L + E+G +NR+L L++S
Sbjct: 179 GSFEVVVSERRPVPLYQQVLVGTKLVDLFEGVAPTARELPGERGAKVNREL----LKVSR 234
Query: 378 SEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437
+E +D R R + SFG + + + R++V +V++ R
Sbjct: 235 AEATRVRDDSRRPRGRSGRGKRPRGS--GSFGGDVHPRFAGHRTSRTEVARVLE-----R 287
Query: 438 SRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEV-ELA---LKRFRILYPDAVR 491
+R +LPAIWFIF+R GCDAAV+ L NL E + + E+A + + DA+
Sbjct: 288 AR-LLPAIWFIFSRAGCDAAVEQLLTAGVNLTTRAEAALLGEIADRHVSGLSVTDLDALG 346
Query: 492 EPAIKG-LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
+G L G+AAHHAG LP +K+ +EE F G K+VFATETLA GINMPART VL
Sbjct: 347 YEDFRGALCAGIAAHHAGQLPAFKAIVEEGFATGACKLVFATETLALGINMPARTVVLEK 406
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 610
L K + +T E Q+ GRAGRRGID GH V+ P L PL
Sbjct: 407 LVKYNGEAVVDITPGEYTQLTGRAGRRGIDVEGHAVVQWQPGMDPRAVAGLASRRTYPLR 466
Query: 611 SQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
S F SY M +NL A GR E AR+++ QSF +
Sbjct: 467 SSFAPSYNMAVNLTA-----------------SLGR--ERAREVLNQSFAQF 499
>gi|319949284|ref|ZP_08023364.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
gi|319437074|gb|EFV92114.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
Length = 886
Score = 329 bits (843), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 222/595 (37%), Positives = 302/595 (50%), Gaps = 92/595 (15%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F D FQ + A G +++VSAPT SGKTL+ E AA +A R FYTTP+KALSNQ
Sbjct: 23 FAPDPFQLEAFAALDAGRNLLVSAPTGSGKTLVGEYAAYRALAGGGRCFYTTPVKALSNQ 82
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
KFR+FRE FG NVGLLTGD +I+ +A I++MTTE+LRNM+Y S+ S L D+D +
Sbjct: 83 KFRQFRERFGPENVGLLTGDHSIDADAPIVVMTTEVLRNMIY------SASSALHDLDCV 136
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DE+HYL D SRG VWEEII+ V ++ LSAT++N DEL WI +I G T ++ S
Sbjct: 137 VMDEIHYLGDRSRGVVWEEIILTLDPAVLLVGLSATLSNTDELGDWITEIRGDTAVVLSE 196
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RPVPL T L+P+ Y D R SR
Sbjct: 197 HRPVPLAHMLYTDGDLVPVR-------------AAADQRRRARSGYHD---ERMASRP-- 238
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAA 457
R+Q + D + L +LPAI+F+F+R GCD A
Sbjct: 239 -------------------------RAQWARRQDVIERLDDEHLLPAIYFVFSRAGCDGA 273
Query: 458 VQYLEDCNL-LDECE-----MSEVELALKRFRILYPDAVREPAIK-GLLKGVAAHHAGCL 510
V + L L E S V+ A+ + DA+ A + GL+ G+AAHHAG L
Sbjct: 274 VAQMRRARLRLTTGEEARRIASHVDSAVAQVPQPDLDALDFAAFRAGLVNGLAAHHAGML 333
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
P++++ +EELF GL+KVVFATETLA GI+MPAR VL +K + LTS E Q+
Sbjct: 334 PLFRTIVEELFSAGLIKVVFATETLALGIHMPARAVVLEKTTKFNGDTHMMLTSAEYSQI 393
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 630
GRAGRRGID +G V++ P + L+ PL S FT Y M +NL+
Sbjct: 394 TGRAGRRGIDTKGTAVVLDQPDLDLDALAALVDTPRFPLHSAFTPDYSMAVNLVE----- 448
Query: 631 HLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS 690
Q G +EEA L+ +SF + +++ + + E D + + +
Sbjct: 449 ------------QLG--VEEATTLIGRSFAQFQTDRTLVSRSRAIERRSDERDRMRASLE 494
Query: 691 DDAIDRKSRRLLSEAAYKEMANLQEEL-----KAEKRFRTELRRRMELKRFSALK 740
+ D A E L+ EL KAEK R + R++ R + LK
Sbjct: 495 EAGGD---------ADLDEYMGLRAELSRLERKAEKATRDD---RLDSVRSAMLK 537
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 106/241 (43%), Gaps = 40/241 (16%)
Query: 928 KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRI 987
K+ARL ++ AR + D T E + ++R + ++ + G+ E ++
Sbjct: 663 KLARLHERWARAD--------ADVAALTAEVDADADSLARRFRRIVDLLRHLGYLE--KV 712
Query: 988 SNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV 1047
V+ T A G A + E +L++A LR + L A LAAV A++V
Sbjct: 713 DGVLRATDA-----------GHLLAGVHTEQDLFVAECLRRGVWRGLDAAGLAAVIATIV 761
Query: 1048 SEGIKVRLWKNNSSIYEPSTTVI-NVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMV 1106
+ + +S+I EPS V+ + + + + E++ H + LD+ + ++
Sbjct: 762 AHP------RTDSAIREPSDEVLRSALAETERVAADVAEVERAHRLPTTPDLDAGLAPVL 815
Query: 1107 EAWASG--------LTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVD-QRLQKNA 1157
W SG +W+E L GD R R +D+LAQ+ ++ + D R ++A
Sbjct: 816 HHWVSGGALASILAASWQE---GVELTAGDFVRSARLVVDVLAQVGQVAEPDLARTARSA 872
Query: 1158 V 1158
V
Sbjct: 873 V 873
>gi|375142138|ref|YP_005002787.1| superfamily II RNA helicase [Mycobacterium rhodesiae NBB3]
gi|359822759|gb|AEV75572.1| superfamily II RNA helicase [Mycobacterium rhodesiae NBB3]
Length = 926
Score = 328 bits (842), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 220/605 (36%), Positives = 310/605 (51%), Gaps = 61/605 (10%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQR++ EA G V+V APT +GKT++ E A +A R+ FYTTP+KALSNQ
Sbjct: 19 FSLDAFQRTACEALENGQGVLVCAPTGAGKTVVGEFAVHLALAAGRKCFYTTPIKALSNQ 78
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K + +G +GLLTGD +IN +A I++MTTE+LRNMLY ++ L + +
Sbjct: 79 KHNDLVRRYGAEKIGLLTGDQSINGDADIVVMTTEVLRNMLY------ANSPALQGLSHV 132
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVH+L+D RG VWEE+I++ P +V ++ LSATV+NA+E GWI + G T ++
Sbjct: 133 VMDEVHFLADRMRGAVWEEVILHLPDDVLLVSLSATVSNAEEFGGWIQTVRGDTTVVVDE 192
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RPVPL + + L D + K R L V P R R+ A
Sbjct: 193 HRPVPLWQHVMVGKRVFDLFDYRAKGAKRDDRRELL------VDPEL---LRHIAHRQEA 243
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAA 457
D ++ G+++ S+ SI R P VI T L +LPAI FIF+R GCDAA
Sbjct: 244 DRLADWQPRGRGRNR-SRPSI--CRGPTRPDVIGT---LEREGLLPAITFIFSRVGCDAA 297
Query: 458 VQYL--EDCNLLDECEMSEVELALKRFRILYPDAV---------REPAIKGLLKGVAAHH 506
V+ L E + + + R P+A RE GLL+G+AAHH
Sbjct: 298 VKQCLRSSLRLTTNSERARIAEVIDRRCADLPEADLVILDYHEWRE----GLLRGLAAHH 353
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
AG LP+++ +EELF GLVK VFATETLA GINMPART VL L K + LT E
Sbjct: 354 AGMLPVFRHTVEELFVAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGE 413
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
Q+ GRAGRRGID GH V++ TP E L PL S F SY M +NL+
Sbjct: 414 YTQLTGRAGRRGIDVEGHAVVLWTPDVDPAEVAGLASTRTFPLRSSFAPSYNMTINLVH- 472
Query: 627 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLT 686
Q G + +A KL+E SF Y ++ + + ++ +
Sbjct: 473 ----------------QMGPA--QAHKLLESSFAQYQADRSVVGLVRGIERGERMLGEIA 514
Query: 687 SEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDF 746
+E+ R+ ++A + L++++ +R ++ R L+R A D L
Sbjct: 515 AELGGGPPIRQG---AADAPILDYVRLRQQISERERAQSRASR---LQRRKAANDALTAL 568
Query: 747 ENGHL 751
G +
Sbjct: 569 RRGDI 573
>gi|415729405|ref|ZP_11472431.1| helicase [Gardnerella vaginalis 6119V5]
gi|388064439|gb|EIK86973.1| helicase [Gardnerella vaginalis 6119V5]
Length = 877
Score = 328 bits (842), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 201/507 (39%), Positives = 282/507 (55%), Gaps = 77/507 (15%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI--FYTTPLKALS 215
F +D FQR +I+A ++V+V+APT +GKT++A+ A +A QR + FYTTP+KALS
Sbjct: 55 FDLDDFQREAIDALEAENNVLVAAPTGAGKTVVADFAVF--LAQQRNVKAFYTTPIKALS 112
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+ +F E +G NVGLLTGD+++N EA I++MTTE+LRNMLY++ ++S +
Sbjct: 113 NQKYHDFCEQYGSKNVGLLTGDTSVNPEADIVVMTTEVLRNMLYENSITLNS------LG 166
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELIT 335
++LDE+HYL+D RG VWEE+II+ PK V+II LSATV+N ++ + W+ + G T L+
Sbjct: 167 FVILDEIHYLADKFRGAVWEEVIIHLPKTVKIIGLSATVSNVEDFSSWLESVRGTTHLVV 226
Query: 336 SSRRPVPLTWYF------STKTALLPLLDEKGK---------HMNRKLSLNYLQLSTSEV 380
RPVPL + T+ LL L D K + RKL+ + +
Sbjct: 227 DEHRPVPLERHVVIQEDGRTEPELLDLYDRDNKGNETKRVNPALTRKLN-EWEHRARRRQ 285
Query: 381 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLR 437
Y D R R +K V G + K++ R P+ VID L +L
Sbjct: 286 DSYSDSKYRYRKGKKR--------VVRRGVAESDKST-----RRHTPKRWAVIDELDYL- 331
Query: 438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLL--DECEMSEVE------------------L 477
MLP I+FIF+R GCD AVQ + L+ + EM E+ L
Sbjct: 332 --GMLPGIYFIFSRSGCDQAVQQCLNAGLILTSDDEMYEIRKIVDSMVANQLSKEDLHAL 389
Query: 478 ALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAA 537
+ +RFR L +G AAHHAG + +++ +E LF+RGL+KVVFATETLA
Sbjct: 390 SFERFRF------------SLEQGFAAHHAGMIALFRHIVETLFERGLIKVVFATETLAL 437
Query: 538 GINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEE 597
G+NMPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ GH VLV +
Sbjct: 438 GLNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLVDHADFVPAQ 497
Query: 598 CCKLLFAGVEPLVSQFTASYGMVLNLL 624
L V PL S F ++ M +NLL
Sbjct: 498 AAALSSKRVYPLHSSFVPTFNMAVNLL 524
>gi|392375262|ref|YP_003207095.1| helicase [Candidatus Methylomirabilis oxyfera]
gi|258592955|emb|CBE69264.1| putative helicase [Candidatus Methylomirabilis oxyfera]
Length = 839
Score = 328 bits (842), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 205/521 (39%), Positives = 277/521 (53%), Gaps = 60/521 (11%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D Y F D FQ +I GSSV+VSAPT +GKTLIAE A +A+Q RI YT
Sbjct: 36 IDAFRDRYPFPFDPFQEEAIGLIAEGSSVIVSAPTGAGKTLIAEFAIFRALAHQHRIAYT 95
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TPLKALSNQK+ +F +G+ VG+LTGD +N A +++MTTEILRN Y
Sbjct: 96 TPLKALSNQKYADFTRQWGEETVGILTGDVKVNPRAPLVVMTTEILRNKFYG-----GEC 150
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
GL +VLDE HY+ ++ RGTVWEEIII CP EVQ++ LSATV+N E+A WIGQ H
Sbjct: 151 EGL---RYVVLDECHYMGNVGRGTVWEEIIINCPPEVQLVALSATVSNIREIAEWIGQTH 207
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
I RPVPL + L D +G ++ P +
Sbjct: 208 RPIRPIHHPVRPVPLQYL---------LCDREG-----------------QLWPPEPASV 241
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
RR +D + + + + + RR + + I + LR+R LPAI+FI
Sbjct: 242 RRILHAFFSDRSVSEGREAGRWERRREGRHRPFRRRALDESI-AIAALRARRWLPAIYFI 300
Query: 449 FNRRGCDAAVQYLEDCN--LLDECEMSEVELALKRFRILYPDAVREP-----AIKGLLKG 501
F+R GC+ A+ L + LLD EVE +++ + YP E + GL +G
Sbjct: 301 FSRSGCERALARLLERGEPLLDPARGEEVEETIQQTLLDYPSISLESDLNRLILSGLRRG 360
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
HHAG LP K E LF+RGLV+VVFATET++ GI+MPA++ V+ L KR+ G
Sbjct: 361 AGLHHAGVLPALKRLTELLFERGLVQVVFATETMSLGIHMPAKSVVIGGLRKRSDLGFRG 420
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
LT ELFQMAGRAGRRGID G ++ EG E+ +L+ EP+ S+F Y
Sbjct: 421 LTVGELFQMAGRAGRRGIDPEGTCLMALDSAEGVEDAVRLVRGDPEPIDSRFRIGYS--- 477
Query: 622 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
+ A ++ + E E RK +E+SFG +
Sbjct: 478 ---SAALLIEMQREP------------EAIRKTIEKSFGQF 503
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 121/260 (46%), Gaps = 17/260 (6%)
Query: 921 NYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG 980
NY+E R+K+ + +++ + ++ + + + + RL +R + +Q++ S
Sbjct: 588 NYEESRSKLDAMALALSQMPCHRCAERSLRERQLKQSR--RLGQMLERHHQTQQQLQNSY 645
Query: 981 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 1040
W++FLR+ ++ +D + G A++R +NEL +A V + +L L P +LA
Sbjct: 646 WEQFLRVVGILQYFGYVDDGR--LGAEGRLIASLRHDNELLVARVAFSGLLQGLVPEELA 703
Query: 1041 AVCASLV-----SEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIP 1095
+ + LV +E +L+ + + + + L+E ++Q + VE+P
Sbjct: 704 GLLSCLVEEPRATEQAAAKLFLRDQA------HLRRRVKTLEELSQEVDKVQRSYQVELP 757
Query: 1096 CCLDSQFSGMVEAWASGLT-WREMM-MDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRL 1153
+ + + W SG W ++ +GDL R RR IDL Q+ + P++ L
Sbjct: 758 VSMHTTYLAATHRWVSGEDDWLALVEQSFGGHEGDLIRAFRRLIDLCRQLEESPELPADL 817
Query: 1154 QKNAVDASNVMDRPPISELA 1173
+ A+ ++DR + E A
Sbjct: 818 TRTLSRATEMLDRGIVLESA 837
>gi|304389475|ref|ZP_07371438.1| helicase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|304327285|gb|EFL94520.1| helicase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
Length = 816
Score = 328 bits (841), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 214/564 (37%), Positives = 299/564 (53%), Gaps = 88/564 (15%)
Query: 112 EVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAF 171
E + ++P+P+ R ++ + + E+ EF +++DF +D FQ + +
Sbjct: 22 EAADATNPSPAQR--YQAFKATQQSPELYEF----------QALFDFPLDDFQIEACQVL 69
Query: 172 LRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNV 231
+G V+VSAPTS+GKT++ +R+FYTTP+KALSNQK+ E E FG +NV
Sbjct: 70 DKGQDVLVSAPTSAGKTIVGFYGIFLAFHQGKRLFYTTPIKALSNQKYLELVELFGVDNV 129
Query: 232 GLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRG 291
GLLTGD+AIN +A I++MTTE+LRNM+Y + + L D+ +V+DEVHYLSD RG
Sbjct: 130 GLLTGDTAINGDAAIIVMTTEVLRNMIY-------AAAPLADLGYVVMDEVHYLSDHFRG 182
Query: 292 TVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF-STK 350
VWEEIII+ V++ICLSAT++NA+ A W+ + G T +I++S RPVPL + S
Sbjct: 183 PVWEEIIIHLDAAVRLICLSATISNANVFAQWLQTLRGPTTVISTSVRPVPLKHFMISAS 242
Query: 351 TALLPLL--DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSF 408
+LPL E G H+NR L L + +V P + RR + +
Sbjct: 243 GEVLPLFAKGEVGGHLNRAL----LAQAAQQVMPRRGRMPRRIRADR------------- 285
Query: 409 GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL-- 466
A+ RS L +D+LPAI FIF+R+GC+ A + D L
Sbjct: 286 ----------PAVARS-----------LEQQDLLPAIVFIFSRQGCNDAAAQVFDAGLRF 324
Query: 467 -----LDECEMSEVELALKRFRILYPDAVREPAI-KGLLKGVAAHHAGCLPIWKSFIEEL 520
D+ + EVE L F A+ + L G+A HHAG LPI K E L
Sbjct: 325 TTTEEADQIRL-EVETTLAGFSQGDLSAIDVSNWEETLAAGIAPHHAGLLPIQKQLTESL 383
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F +GL+++VFATETLA GINMPART VL SL+K R LT E Q+ GRAGRRGID
Sbjct: 384 FAKGLIRLVFATETLALGINMPARTVVLESLNKWNGQERANLTPGEYTQLTGRAGRRGID 443
Query: 581 NRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMK 640
+ GH + + + L PL S F ++ M +NLLA
Sbjct: 444 SVGHALTLMEVKNPPQLLANLASQQTYPLHSAFVPTFNMAVNLLART------------- 490
Query: 641 ALQAGRSLEEARKLVEQSFGNYVG 664
+LE A++ VE+SF YV
Sbjct: 491 ------TLEGAKETVEKSFAQYVA 508
Score = 43.5 bits (101), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 10/185 (5%)
Query: 966 SKRLTK-RIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAM 1024
S R+T+ RIE S ++ V+ E +D N Q + G ++ E +L +
Sbjct: 612 SARITRQRIETRTKSLARQLDHTCQVLRELDYVDDNFQ-LRDAGIMLQSVYNERDLLVVE 670
Query: 1025 VLRNKILLDLKPAQLA---AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRS 1081
LR + DL A LA +VC + G RL E S ++ + +
Sbjct: 671 CLRRGVFDDLNVADLAGALSVCLAQNRTGGLSRLIPA-----EASASLAIALESMGRINF 725
Query: 1082 SFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 1141
LQ++H +E L++ V AWA ++ + + + GD R++R+ IDL
Sbjct: 726 EIATLQQEHYLEAYPPLETDLLPGVVAWAQDISLGQCLELTGMSAGDFVRVIRQVIDLAD 785
Query: 1142 QIPKL 1146
Q+ KL
Sbjct: 786 QLRKL 790
>gi|325963293|ref|YP_004241199.1| superfamily II RNA helicase [Arthrobacter phenanthrenivorans Sphe3]
gi|323469380|gb|ADX73065.1| superfamily II RNA helicase [Arthrobacter phenanthrenivorans Sphe3]
Length = 977
Score = 328 bits (841), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 203/536 (37%), Positives = 280/536 (52%), Gaps = 65/536 (12%)
Query: 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216
DF +D FQR S + G V+V+APT +GKT++ E A + + FYTTP+KALSN
Sbjct: 51 DFELDDFQRQSCRSLQEGRGVLVAAPTGAGKTIVGEFAIYLALQRGLKAFYTTPIKALSN 110
Query: 217 QKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276
QKF E E +G + VGLLTGD++IN +A +++MTTE+LRNMLY + + L D+
Sbjct: 111 QKFTELSEKYGADKVGLLTGDTSINGDAPVVVMTTEVLRNMLY------ADSATLDDLGY 164
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
+V+DEVHYL+D RG VWEE+II+ P EVQ++ LSATV+NA+E W+ + G T++I S
Sbjct: 165 VVMDEVHYLADRFRGAVWEEVIIHLPSEVQVVSLSATVSNAEEFGAWLDTVRGDTDIIVS 224
Query: 337 SRRPVPLTWYFSTKTALLPLL-----------------------DEKGKHMNRKLSLNYL 373
RPVPL + ++ L E K +++ + L
Sbjct: 225 EHRPVPLWQHVMVGRQIMDLFAGETTFDEIAPPVEEGETQPVSSAESSKGRGFEVNPDLL 284
Query: 374 QLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTL 433
++ SE + G R N+ G + IR + PQVI +L
Sbjct: 285 AVARSESQQSFRGRPGGPGGRGQRSRRGNDRPGRLGDDR-------GIRPASRPQVIASL 337
Query: 434 WHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK---RFRILYPDAV 490
+ D+LPAI FIF+R GCDAAV L E + +A + + PD +
Sbjct: 338 DRM---DLLPAITFIFSRAGCDAAVAQCVGSGLWLTTEKEQRIIAQRVDEAGHDIPPDDL 394
Query: 491 REPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
GL++G AAHHAG LP +K +E+LF GLVK VFATETLA G+NMPAR+
Sbjct: 395 DVLGFWTWRDGLIRGFAAHHAGMLPTFKEVVEKLFADGLVKAVFATETLALGVNMPARSV 454
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606
VL L K + +T+ E Q+ GRAGRRGID GH V++ P L
Sbjct: 455 VLEKLDKFNGEAHVDITAGEYTQLTGRAGRRGIDVEGHAVVLWQPGTDPTAVAGLASRRT 514
Query: 607 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F +Y M +NLLA Q GR+ AR+++E SF +
Sbjct: 515 YPLNSSFRPTYNMSINLLA-----------------QFGRA--RAREILESSFAQF 551
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 107/221 (48%), Gaps = 22/221 (9%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQ---VIFPLGETAAA 1013
E+ +L+ + L ++I+ + K F R+ +V+ L+ I P G+
Sbjct: 759 ERWWKLRRETDGLVRQIQGRTNTIAKTFDRVCDVLSAYGYLEPAADGRLSISPDGQRLRR 818
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSSIYEPST 1067
I GE +L ++ LR DL A++AA+ + LV + G++ R+ PS
Sbjct: 819 IYGEKDLLISQSLRLGAFDDLDAAEVAALASVLVYQAKREDRGLRPRM---------PSV 869
Query: 1068 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGM--VEAWASGLTWREMMMDCALD 1125
++ ++++ S+ +++E++ ++P + + + V WA G ++++ L
Sbjct: 870 SLETSVDIVVREWSALEDVEEEN--KLPLTGEPELGLIWPVYKWARGRHLQDVLSGTDLA 927
Query: 1126 DGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
GD R +++ +DLL Q+ K+P +D RL + +A ++ R
Sbjct: 928 AGDFVRWVKQVVDLLDQLAKIPGLDPRLARLCTEAIKLIRR 968
>gi|366999174|ref|XP_003684323.1| hypothetical protein TPHA_0B02170 [Tetrapisispora phaffii CBS 4417]
gi|357522619|emb|CCE61889.1| hypothetical protein TPHA_0B02170 [Tetrapisispora phaffii CBS 4417]
Length = 1270
Score = 328 bits (841), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 195/497 (39%), Positives = 284/497 (57%), Gaps = 35/497 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A I+ F +D FQ+ +I +G SV V+A TS+GKT++AE A + N + YT+P+K
Sbjct: 312 ARIWPFELDVFQKEAIYHLEQGDSVFVAAHTSAGKTVVAEYAIAMSKRNMTKTIYTSPIK 371
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFR+F+ETF D +GL+TGD IN +A LIMTTEILR+MLY+ ++
Sbjct: 372 ALSNQKFRDFKETFDDVEIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIR------ 425
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 426 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 485
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM--NRKLSLNYLQLSTSEVKPYKDGGSR 389
+I++ +RPVPL TK L+P+++ K + + N K N ++ +TS+ K K
Sbjct: 486 YVISTPKRPVPLEISIWTKNVLVPVINPKREFLESNFKKHKNLIEGTTSD-KVQKTLSHS 544
Query: 390 RRNSRKHADMNSNNIVT-----------SFGQHQLSKNSINAIRRSQVPQ-----VIDTL 433
+ NS + V+ S G + N +RS + +ID
Sbjct: 545 KENSTRGGARGGARGVSRGGTRGSMRGGSRGAGAIGSNKSQFFKRSGPNKKTWSGIID-- 602
Query: 434 WHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE- 492
+LR +D+LPA+ F+F+++ C+ +L+ + E S++ + +++ RE
Sbjct: 603 -YLRGKDLLPAVIFVFSKKRCEEYADWLDAVSFCSNKEKSQIHMFIEKSITRLKKEDREL 661
Query: 493 P---AIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
P I+ LL +G+A HH G LPI K IE LF +GL+KV+FATET A G+N+P RT +
Sbjct: 662 PQILKIRSLLERGIAVHHGGLLPIVKELIEILFSKGLIKVLFATETFAMGLNLPTRTVIF 721
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV-E 607
S L K +G LT E QMAGRAGRRG+D G V+++ + K + G+
Sbjct: 722 SELQKHDVNGLRSLTPGEFTQMAGRAGRRGLDKIGTVIVMAYTEPLNQSVFKEVTLGIPT 781
Query: 608 PLVSQFTASYGMVLNLL 624
L SQF +Y M+LNLL
Sbjct: 782 KLQSQFKLTYNMILNLL 798
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 74/167 (44%), Gaps = 25/167 (14%)
Query: 990 VIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
V+H T +D N V G A I EL + ++ + L D +P ++ ++ ++ + E
Sbjct: 1081 VLHRTGFIDQNQNVTLK-GRVACEINTGFELVITELILDNFLGDFEPEEIVSLLSAFIYE 1139
Query: 1050 G---------IKVRLWKNNSSIYEPSTTVINVIN----VLDEHRSSFLELQEKHGVEIPC 1096
G + RL K I E ++++ + + S FLE++ + G+
Sbjct: 1140 GRSRDEPPPIVTPRLIKGKQKIEEIYGRMLDIFAEEQITMTKEESEFLEMK-RFGL---- 1194
Query: 1097 CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 1143
++ WA GL+++E+M +G + R++ R ++ Q+
Sbjct: 1195 ------INVIYEWARGLSFKEIMEISIEQEGTVVRVITRLDEICRQV 1235
>gi|298346820|ref|YP_003719507.1| helicase [Mobiluncus curtisii ATCC 43063]
gi|298236881|gb|ADI68013.1| helicase [Mobiluncus curtisii ATCC 43063]
Length = 816
Score = 328 bits (841), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 208/525 (39%), Positives = 284/525 (54%), Gaps = 76/525 (14%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E +++DF +D FQ + + +G V+VSAPTS+GKT++ + +R+FYTTP
Sbjct: 49 EFQALFDFPLDDFQIEACQVLDKGQDVLVSAPTSAGKTIVGFYGIFLALRQGKRLFYTTP 108
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+ E E FG +NVGLLTGD+AIN +A I++MTTE+LRNM+Y + +
Sbjct: 109 IKALSNQKYLELVELFGVDNVGLLTGDTAINGDAAIIVMTTEVLRNMIY-------AAAP 161
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L D+ +V+DEVHYLSD RG VWEEIII+ V++ICLSAT++NA+ A W+ + G
Sbjct: 162 LADLGYVVMDEVHYLSDHFRGPVWEEIIIHLDAAVRLICLSATISNANVFAQWLQTLRGP 221
Query: 331 TELITSSRRPVPLTWYF-STKTALLPLL--DEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
T +I++S RPVPL + S +LPL E G H+NR L L + +V P +
Sbjct: 222 TTVISTSVRPVPLKHFMISASGEVLPLFAKGEVGGHLNRAL----LAQAAQQVMPRRGRM 277
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
RR + + A+ RS L +D+LPAI F
Sbjct: 278 PRRIRADR-----------------------PAVARS-----------LEQQDLLPAIVF 303
Query: 448 IFNRRGCDAAVQYLEDCNL-------LDECEMSEVELALKRFRILYPDAVREPAI-KGLL 499
IF+R+GC+ A + D L D+ + EVE L F A+ + L
Sbjct: 304 IFSRQGCNDAAAQVFDAGLRFTTTEEADQIRL-EVETTLAGFSQGDLSAIDVSNWEETLA 362
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
G+A HHAG LPI K E LF +GL+++VFATETLA GINMPART VL SL+K R
Sbjct: 363 AGIAPHHAGLLPIQKQLTESLFAKGLIRLVFATETLALGINMPARTVVLESLNKWNGQER 422
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
LT E Q+ GRAGRRGID+ GH + + + L PL S F ++ M
Sbjct: 423 ANLTPGEYTQLTGRAGRRGIDSVGHALTLMEVKNPPQLLANLASQQTYPLHSAFVPTFNM 482
Query: 620 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 664
+NLLA +LE A++ VE+SF YV
Sbjct: 483 AVNLLART-------------------TLEGAKETVEKSFAQYVA 508
Score = 43.5 bits (101), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 10/185 (5%)
Query: 966 SKRLTK-RIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAM 1024
S R+T+ RIE S ++ V+ E +D N Q + G ++ E +L +
Sbjct: 612 SARITRQRIETRTKSLARQLDHTCQVLRELDYVDDNFQ-LRDAGIMLQSVYNERDLLVVE 670
Query: 1025 VLRNKILLDLKPAQLA---AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRS 1081
LR + DL A LA +VC + G RL E S ++ + +
Sbjct: 671 CLRRGVFDDLNVADLAGALSVCLAQNRTGGLSRLIPA-----EASASLAIALESMGRINF 725
Query: 1082 SFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 1141
LQ++H +E L++ V AWA ++ + + + GD R++R+ IDL
Sbjct: 726 EIATLQQEHYLEAYPPLETDLLPGVVAWAQDISLGQCLELTGMSAGDFVRVIRQVIDLAD 785
Query: 1142 QIPKL 1146
Q+ KL
Sbjct: 786 QLRKL 790
>gi|315655365|ref|ZP_07908265.1| helicase [Mobiluncus curtisii ATCC 51333]
gi|315490305|gb|EFU79930.1| helicase [Mobiluncus curtisii ATCC 51333]
Length = 816
Score = 328 bits (841), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 214/564 (37%), Positives = 300/564 (53%), Gaps = 88/564 (15%)
Query: 112 EVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAF 171
E ++ +SP+P+ R ++ + + ++ EF +++DF +D FQ + +
Sbjct: 22 EAANATSPSPAQR--YQAFKATQQSPQLYEF----------QALFDFPLDDFQIEACQVL 69
Query: 172 LRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNV 231
+G V+VSAPTS+GKT++ + +R+FYTTP+KALSNQK+ E E FG +NV
Sbjct: 70 DKGQDVLVSAPTSAGKTIVGLYGIFLALRQGKRLFYTTPIKALSNQKYLELVELFGVDNV 129
Query: 232 GLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRG 291
GLLTGD+AIN +A I++MTTE+LRNM+Y + + L D+ +V+DEVHYLSD RG
Sbjct: 130 GLLTGDTAINGDAAIIVMTTEVLRNMIY-------AAAPLADLGYVVMDEVHYLSDHFRG 182
Query: 292 TVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF-STK 350
VWEEIII+ V++I LSAT++NA+ A W+ + G T +I++S RPVPL + S
Sbjct: 183 PVWEEIIIHLDAAVRLISLSATISNANVFAQWLQTLRGPTTVISTSVRPVPLKHFMISAS 242
Query: 351 TALLPLL--DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSF 408
+LPL E G H+NR L L + +V P + RR + +
Sbjct: 243 GEILPLFAKGEVGGHLNRAL----LAQAAQQVMPRRGRMPRRIRADR------------- 285
Query: 409 GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL-- 466
A+ RS L RD+LPAI FIF+R+GC+ A + D L
Sbjct: 286 ----------PAVARS-----------LEQRDLLPAIVFIFSRQGCNDAAAQVFDAGLRF 324
Query: 467 -----LDECEMSEVELALKRFRILYPDAVREPAI-KGLLKGVAAHHAGCLPIWKSFIEEL 520
D+ + EVE L F A+ + L G+A HHAG LPI K E L
Sbjct: 325 TTPQEADQISL-EVETTLAGFSQGDLSAIDVSNWEETLAAGIAPHHAGLLPIQKQLTESL 383
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F +GL+++VFATETLA GINMPART VL SL+K R LT E Q+ GRAGRRGID
Sbjct: 384 FAKGLIRLVFATETLALGINMPARTVVLESLNKWNGQERANLTPGEYTQLTGRAGRRGID 443
Query: 581 NRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMK 640
+ GH + + + L PL S F ++ M +NLLA
Sbjct: 444 SVGHALTLMEVKNPPQLLANLASQQTYPLHSAFVPTFNMAVNLLART------------- 490
Query: 641 ALQAGRSLEEARKLVEQSFGNYVG 664
+LE A++ VE+SF YV
Sbjct: 491 ------TLEGAKETVEKSFAQYVA 508
Score = 45.4 bits (106), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 10/185 (5%)
Query: 966 SKRLTK-RIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAM 1024
S R+T+ RIE S ++ V+ E +D N Q + G ++ E +L +
Sbjct: 612 SARMTRQRIETRTKSLARQLDHTCQVLRELDYVDDNFQ-LRDAGIMLQSVYNERDLLVVE 670
Query: 1025 VLRNKILLDLKPAQLA---AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRS 1081
LR + DL A LA +VC + G RL E S + + +
Sbjct: 671 CLRRGVFDDLNVADLAGALSVCLAQNRTGGLSRLIPA-----EASANLATALESMGRINF 725
Query: 1082 SFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 1141
LQ++H +E L++ V AWA +T + + + GD R++R+ IDL
Sbjct: 726 EIATLQQEHYLEAYPPLETDLLPGVVAWAQDVTLGQCLELTGMSAGDFVRVIRQVIDLAD 785
Query: 1142 QIPKL 1146
Q+ KL
Sbjct: 786 QLRKL 790
>gi|315656721|ref|ZP_07909608.1| helicase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
gi|315492676|gb|EFU82280.1| helicase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
Length = 816
Score = 328 bits (840), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 214/564 (37%), Positives = 300/564 (53%), Gaps = 88/564 (15%)
Query: 112 EVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAF 171
E ++ +SP+P+ R ++ + + ++ EF +++DF +D FQ + +
Sbjct: 22 EAANATSPSPAQR--YQAFKATQQSPQLYEF----------QALFDFPLDDFQIEACQVL 69
Query: 172 LRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNV 231
+G V+VSAPTS+GKT++ + +R+FYTTP+KALSNQK+ E E FG +NV
Sbjct: 70 DKGQDVLVSAPTSAGKTIVGLYGIFLALRQGKRLFYTTPIKALSNQKYLELVELFGVDNV 129
Query: 232 GLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRG 291
GLLTGD+AIN +A I++MTTE+LRNM+Y + + L D+ +V+DEVHYLSD RG
Sbjct: 130 GLLTGDTAINGDAAIIVMTTEVLRNMIY-------AAAPLADLGYVVMDEVHYLSDHFRG 182
Query: 292 TVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF-STK 350
VWEEIII+ V++I LSAT++NA+ A W+ + G T +I++S RPVPL + S
Sbjct: 183 PVWEEIIIHLDAAVRLISLSATISNANVFAQWLQTLRGPTTVISTSVRPVPLKHFMISAS 242
Query: 351 TALLPLL--DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSF 408
+LPL E G H+NR L L + +V P + RR + +
Sbjct: 243 GEILPLFAKGEVGGHLNRAL----LAQAAQQVMPRRGRMPRRIRADR------------- 285
Query: 409 GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL-- 466
A+ RS L RD+LPAI FIF+R+GC+ A + D L
Sbjct: 286 ----------PAVARS-----------LEQRDLLPAIVFIFSRQGCNDAAAQVFDAGLRF 324
Query: 467 -----LDECEMSEVELALKRFRILYPDAVREPAI-KGLLKGVAAHHAGCLPIWKSFIEEL 520
D+ + EVE L F A+ + L G+A HHAG LPI K E L
Sbjct: 325 TTPQEADQIRL-EVETTLAGFSQGDLSAIDVSNWEETLAAGIAPHHAGLLPIQKQLTESL 383
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F +GL+++VFATETLA GINMPART VL SL+K R LT E Q+ GRAGRRGID
Sbjct: 384 FAKGLIRLVFATETLALGINMPARTVVLESLNKWNGQERANLTPGEYTQLTGRAGRRGID 443
Query: 581 NRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMK 640
+ GH + + + L PL S F ++ M +NLLA
Sbjct: 444 SVGHALTLMEVKNPPQLLANLASQQTYPLHSAFVPTFNMAVNLLART------------- 490
Query: 641 ALQAGRSLEEARKLVEQSFGNYVG 664
+LE A++ VE+SF YV
Sbjct: 491 ------TLEGAKETVEKSFAQYVA 508
Score = 45.1 bits (105), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 10/185 (5%)
Query: 966 SKRLTK-RIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAM 1024
S R+T+ RIE S ++ V+ E +D N Q + G ++ E +L +
Sbjct: 612 SARITRQRIETRTKSLARQLDHTCQVLRELDYVDDNFQ-LRDAGIMLQSVYNERDLLVVE 670
Query: 1025 VLRNKILLDLKPAQLA---AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRS 1081
LR + DL A LA +VC + G RL E S + + +
Sbjct: 671 CLRRGVFDDLNVADLAGALSVCLAQNRTGGLSRLIPA-----EASANLATALESMGRINF 725
Query: 1082 SFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 1141
LQ++H +E L++ V AWA +T + + + GD R++R+ IDL
Sbjct: 726 EIATLQQEHYLEAYPPLETDLLPGVVAWAQDVTLGQCLELTGMSAGDFVRVIRQVIDLAD 785
Query: 1142 QIPKL 1146
Q+ KL
Sbjct: 786 QLRKL 790
>gi|134098834|ref|YP_001104495.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
gi|291005808|ref|ZP_06563781.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
NRRL 2338]
gi|133911457|emb|CAM01570.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
NRRL 2338]
Length = 925
Score = 328 bits (840), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 203/524 (38%), Positives = 282/524 (53%), Gaps = 62/524 (11%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+ A F +D FQR++ +A G V+V APT +GKT++ E A ++ R+ FYTTP
Sbjct: 31 DFAGELSFELDPFQRTACQALESGHGVLVCAPTGAGKTVVGEFAVHLALSEGRKCFYTTP 90
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+ + E +G++ VGLLTGD++IN AQ+++MTTE+LRNMLY + S
Sbjct: 91 IKALSNQKYADLCERYGEDAVGLLTGDTSINGNAQVVVMTTEVLRNMLY------AGSST 144
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+ + +V+DEVHYL+D RG VWEE+I++ P+ VQ+ LSATV+NA+E W+ ++ G
Sbjct: 145 VDQLGYVVMDEVHYLADRFRGAVWEEVILHLPEYVQLASLSATVSNAEEFGEWLVEVRGD 204
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN-YLQLSTSEVKPYKDGGSR 389
T ++ RPVPL + + + L G+ +R+L +N L T E+
Sbjct: 205 TTVVVDEHRPVPLWQHMLVGSRMFDLFG--GETTDRELKINPNLLRHTQEL--------- 253
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR--RSQVPQVIDTLWHLRSRDMLPAIWF 447
SR H T +G+ R R P ++ L L + +LPAI F
Sbjct: 254 ---SRVH---------TPYGRRGGPNGKRRGPRPPRFYAPSRVEILNGLDAAGLLPAIVF 301
Query: 448 IFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG-------L 498
IF+R GCDAAV L E E+ E+ + P++ + + G L
Sbjct: 302 IFSRAGCDAAVSQCVRAGMRLTSEDEVDEIRRVIDEHTSNLPES--DLTVLGYWEWREAL 359
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPART VL L K
Sbjct: 360 ERGLAAHHAGLLPAFKETVEELFVRGLVKAVFATETLALGINMPARTVVLERLVKFNGES 419
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+ L+ E Q+ GRAGRRGID GH V+V P + L PL S F Y
Sbjct: 420 HVDLSPGEYTQLTGRAGRRGIDVEGHAVVVWQPGIDPKGVAGLASTRTYPLRSSFRPGYN 479
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ + GR E AR+L+EQSF +
Sbjct: 480 MAVNLVQ-----------------RVGR--ESARELLEQSFAQF 504
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 12/195 (6%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETAAA 1013
E+ +RL+ +++L +++ S + F RI ++ E + ++ P+ G
Sbjct: 704 ERHERLRGETEQLRRKVAATTHSLARSFDRIIALLAERDYVLLDEDAEEPVTEHGRRLTR 763
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
+ E++L A LR + L P +LAAV +SLV E + + + PS V + +
Sbjct: 764 LYSESDLLAAECLRVGVWEKLGPPELAAVVSSLVYESRR----EGPMAPAVPSGAVSDAL 819
Query: 1074 NVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGD 1128
+ + + +H ++ D F+ V WA G + ++ L GD
Sbjct: 820 QATWQLWGELEDDERRHKLDRTREPDPGFAWPVFRWARGESLERVLTAAESTGHELSAGD 879
Query: 1129 LARLLRRTIDLLAQI 1143
R R+ +DLL QI
Sbjct: 880 FVRWCRQVVDLLDQI 894
>gi|375293114|ref|YP_005127653.1| putative helicase [Corynebacterium diphtheriae INCA 402]
gi|376248519|ref|YP_005140463.1| putative helicase [Corynebacterium diphtheriae HC04]
gi|371582785|gb|AEX46451.1| putative helicase [Corynebacterium diphtheriae INCA 402]
gi|372115087|gb|AEX81145.1| putative helicase [Corynebacterium diphtheriae HC04]
Length = 930
Score = 328 bits (840), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 222/608 (36%), Positives = 317/608 (52%), Gaps = 66/608 (10%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D+FQ +A G V+V APT +GKT++ E A ++ Q + FYTTP+
Sbjct: 14 FAARQKFPLDEFQIRGCQAVESGRGVLVCAPTGAGKTIVGEFAVSLAISQQTKCFYTTPI 73
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKF + + G++ VGLLTGD +INR+A I++MT E+LRNM+Y + L
Sbjct: 74 KALSNQKFHDLVKAHGEDKVGLLTGDVSINRDADIVVMTAEVLRNMIY------ADSEAL 127
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ +V+DE+H+LSD SRG VWEE I+ V +I LSATV+N++E W+ + G T
Sbjct: 128 DRLSHVVMDEIHFLSDSSRGPVWEEAILGLDASVNVIGLSATVSNSEEFGRWLNTVRGDT 187
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL--SLNYLQLSTSEVKPY---- 383
E+I S RPVPL + + PL E G +N +L + L+ +T++ Y
Sbjct: 188 EIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLVEHIERLEGTTTDGTEYGRAQ 246
Query: 384 -KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
K GG R R+ M S+N + H+LS A+ R D L L+ +DML
Sbjct: 247 LKAGGFRNRSR----AMGSDNRASRRSPHRLSDKH-RALSRP------DVLHILQEQDML 295
Query: 443 PAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE----------VELALKRFRILYPDAVR 491
PAI FIF+R GCDAA+ Q + +L E SE + + R+L R
Sbjct: 296 PAITFIFSRAGCDAALHQCMRSSLVLTTQEESEEISDIITAGVAGIPEEDLRLLEYRRWR 355
Query: 492 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
+ L++G AAHHAG LP ++ +E+LF +GLV+ VFATETLA GINMPART VL L
Sbjct: 356 Q----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFATETLALGINMPARTVVLEKL 411
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
K G LT + Q+ GRAGRRGID G+ V+ TP + L PLVS
Sbjct: 412 VKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWTPAMDPGQVAGLASTRTYPLVS 471
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 671
F Y M +NLL K + E A +L+E+SF + ++
Sbjct: 472 TFAPGYNMSVNLL---------------KTI----GFEPAHRLLEKSFAQFQADGSVVDD 512
Query: 672 KDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEMANLQEELKAEKRFRTEL--- 727
+ +++ D LT ++ A D + + ++ E ++ EL E+R L
Sbjct: 513 IKAIESLEESVDQLTKQLH-AAFDSHDQGGAGDVDSFLEYIRIRRELTEEERKHKRLSIE 571
Query: 728 RRRMELKR 735
+R ME R
Sbjct: 572 QRDMETTR 579
Score = 44.3 bits (103), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 100/232 (43%), Gaps = 14/232 (6%)
Query: 938 RTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL 997
R+ ++K D + E+ ++ + K E + G + F RI N++ E +
Sbjct: 694 RSHPAHHWRKREDLARVGEQLVREQRMLEAAQRKVNEATDTLG-RTFDRIINLLAEYDYV 752
Query: 998 DIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRL 1055
+ + VI GE I E++L +A L+ I DL PA+L+ V + E +
Sbjct: 753 EFHDGVPVITEEGENLCQIHNESDLLVAQCLKRGIWDDLDPAELSGVVSMCTFENRRETR 812
Query: 1056 WKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTW 1115
+ +++ E + + N + + +E + + ++ + + + F+ + WA+G
Sbjct: 813 GEPDAATEEMAKAMNNTVRIWEELSTD----ERRYRLPVTRYPEGGFALAMHQWAAGAPL 868
Query: 1116 REMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQRLQKNAVDA 1160
+ A L GD R R+ +DLL Q+ + +R + A+DA
Sbjct: 869 GYCIAAAAESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRRAARKAIDA 920
>gi|374991250|ref|YP_004966745.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
gi|297161902|gb|ADI11614.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
Length = 942
Score = 328 bits (840), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 219/617 (35%), Positives = 317/617 (51%), Gaps = 75/617 (12%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 31 MYDFELDPFQIEACKALEAGKGVLVAAPTGSGKTIVGEFAVHLALTQGRKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + + +G + VGLLTGD++IN EA +++MTTE+LRNMLY + L +
Sbjct: 91 SNQKYTDLVKRYGADRVGLLTGDNSINSEAPVVVMTTEVLRNMLY------AGSQSLLGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 145 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEK-----GKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
S RPVPL + + L +EK G+ R+++ + ++L+ E G +
Sbjct: 205 VSEHRPVPLWQHVLAGRRMYDLFEEKSGQGDGQVGRREVNPDLVRLARMENTRPSFGRDK 264
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
RR NN+ + + + + I P+VI+ L + +LPAI FIF
Sbjct: 265 RR--------GRNNMREA--DRERERRQRSRIWTPGRPEVIE---RLDAEGLLPAITFIF 311
Query: 450 NRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGV 502
+R GC+AAVQ L DE + V ++ PD ++GL +G+
Sbjct: 312 SRAGCEAAVQQCLYAGLRLNDEAARARVRSIVEERTSGIPDEDLHVLGYFEWLEGLERGI 371
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +
Sbjct: 372 AAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADI 431
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
T E Q+ GRAGRRGID GH V++ L PL S F SY M +N
Sbjct: 432 TPGEYTQLTGRAGRRGIDVEGHAVVLWQRAMDPAALAGLAGTRTYPLRSSFKPSYNMAVN 491
Query: 623 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCK----I 678
L++ Q G +R+L+E SF + ++ ++ + +
Sbjct: 492 LVS-----------------QFG--WHRSRELLETSFAQFQADKAVVGISRQVQRNEEGL 532
Query: 679 QKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSA 738
+ +T + D + E A L+ +LK + TEL ++ +R A
Sbjct: 533 RGYRASMTCHLGD---------------FDEYARLRRDLKDRE---TELAKQGVAQRRVA 574
Query: 739 LKDILKDFENG---HLP 752
D L+ G H+P
Sbjct: 575 AADALEKLRPGDVIHVP 591
Score = 47.0 bits (110), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 18/242 (7%)
Query: 910 HMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 969
H H + T++ARL+ + R + D ++ E + RL +++L
Sbjct: 679 HHEMRRHRKERSAAADDTEIARLRATL-RAHPCHGCDEREDHARWAE-RYHRLLRDTRQL 736
Query: 970 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 1029
+RIE + + F RI ++ E L + + + G+ A + GE +L + LR
Sbjct: 737 ERRIEGRTNTIARTFDRICALLSELGYL--SGEEVTDDGKRLARLYGELDLLASECLREG 794
Query: 1030 ILLDLKPAQLAAVCASLVSEG--------IKVRLWKNNSSIYEPSTTVINVINVLDEHRS 1081
+ L PA+LAA ++LV E K+ + ++ E + + D+H+
Sbjct: 795 VWEGLAPAELAACASALVYEARAADDAMPPKLPAGRAKGALGEMVRIWGRLDALEDDHK- 853
Query: 1082 SFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 1141
++ E G P D F+ WASG E++ + + GD R ++ ID+L
Sbjct: 854 --IKQAEGVGQREP---DLGFAWAAYRWASGHGLDELLREVDMPAGDFVRWCKQVIDVLG 908
Query: 1142 QI 1143
QI
Sbjct: 909 QI 910
>gi|444314577|ref|XP_004177946.1| hypothetical protein TBLA_0A06360 [Tetrapisispora blattae CBS 6284]
gi|387510985|emb|CCH58427.1| hypothetical protein TBLA_0A06360 [Tetrapisispora blattae CBS 6284]
Length = 1297
Score = 328 bits (840), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 206/579 (35%), Positives = 312/579 (53%), Gaps = 65/579 (11%)
Query: 91 DEYDDVSGEVSDEIQQSDDEFEVS--------SDSSPAPSWREEFKWQRVEKLCNEVKEF 142
DE+ S + D+I + D+ + SDSS +++ W + L + + F
Sbjct: 266 DEFKINSNQSKDDIIELDNLLPIGIDFGRSIVSDSSSNDPLKKK-NWAHIVDLNHSIDNF 324
Query: 143 GNEMIDVDEL----ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVAT 198
DEL A + F +D FQ+ ++ +G SV V+A TS+GKT++AE A +
Sbjct: 325 -------DELVPNPARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMS 377
Query: 199 VANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNML 258
N + YT+P+KALSNQKFR+F+ETF D +VGL+TGD IN EA LIMTTEILR+ML
Sbjct: 378 KRNMTKTIYTSPIKALSNQKFRDFKETFQDIDVGLITGDVQINPEANCLIMTTEILRSML 437
Query: 259 YQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANAD 318
Y+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N
Sbjct: 438 YRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTF 491
Query: 319 ELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLST 377
E A WIG+ K +I++ +RPVPL K L+P+++EK + + + + + L
Sbjct: 492 EFATWIGRTKQKNIYVISTPKRPVPLVINLWAKKELIPVINEKREFLIKNFNNHKALL-- 549
Query: 378 SEVKPYKDGGSRRRNSRK------------------------HADMNSNNIVTSFGQH-- 411
E P K+ G++ N +A+ + + G +
Sbjct: 550 -EDTPSKNNGTKNDNKNSTRGGSRGGSRSGSRGGSRGGSSRGNANRGGSRGAGAIGSNRS 608
Query: 412 QLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECE 471
Q K + + P++I+ +L+S D+LPA+ F+F+++ C+ +LE N E
Sbjct: 609 QFYKRGGSMPTKKTWPELIN---YLKSHDLLPAVIFVFSKKRCEDYADWLEGINFCTNKE 665
Query: 472 MSEVEL----ALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLV 526
S++ + ++ R R + + I+ LL +G+A HH G LPI K IE LF +GL+
Sbjct: 666 KSQIHMFIEKSITRLRKEDRELPQILKIRSLLERGIAVHHGGLLPIVKELIEILFAKGLI 725
Query: 527 KVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVV 586
+V+FATET A G+N+P RT V S + K + + LT E QMAGRAGRRG D+ G V+
Sbjct: 726 RVLFATETFAMGLNLPTRTVVFSEIKKHDGNSQRYLTPGEFTQMAGRAGRRGKDSTGTVI 785
Query: 587 LVQTPYEGAEECCKLLFAGV-EPLVSQFTASYGMVLNLL 624
++ E K + G+ L SQF +Y M+LNLL
Sbjct: 786 VMTYTEPFKEGNFKEVTLGIPTKLESQFRLTYNMILNLL 824
>gi|116670732|ref|YP_831665.1| DEAD/DEAH box helicase [Arthrobacter sp. FB24]
gi|116610841|gb|ABK03565.1| DEAD/DEAH box helicase domain protein [Arthrobacter sp. FB24]
Length = 964
Score = 327 bits (839), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 218/591 (36%), Positives = 305/591 (51%), Gaps = 83/591 (14%)
Query: 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216
DF +D FQR + + +G V+V+APT +GKT++ E A + + FYTTP+KALSN
Sbjct: 36 DFELDDFQRQACLSLQQGRGVLVAAPTGAGKTIVGEFAIYLALQRALKAFYTTPIKALSN 95
Query: 217 QKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276
QK+ E + +G NVGLLTGD++IN +A +++MTTE+LRNMLY + L D+
Sbjct: 96 QKYSELADKYGPENVGLLTGDTSINGDAPVVVMTTEVLRNMLY------ADSDTLDDLGF 149
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
+V+DEVHYL+D RG VWEE+II+ P EVQ+ LSATV+NA+E W+ + G T++I S
Sbjct: 150 VVMDEVHYLADRFRGAVWEEVIIHLPSEVQVASLSATVSNAEEFGAWLDTVRGHTDVIVS 209
Query: 337 SRRPVPLTW-----------YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTS-EVKPYK 384
RPVPL W F+ +T + E L EV P
Sbjct: 210 EHRPVPL-WQHVMVGREIVDLFAGETTFDEIAPEGESDPAATAMTANAALERGFEVNPDL 268
Query: 385 DGGSR---RRNSRK---HADMNSNNIVTSFGQHQLSKNSINA-IRRSQVPQVIDTLWHLR 437
+R + NSR H + G ++ + + +R++ PQVI +L
Sbjct: 269 LAMARTESQMNSRARFGHGGRSQRRQQHQRGDNRHGQGGQQSPVRKASRPQVIASL---D 325
Query: 438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIK- 496
+D+LP+I FIF+R GCDAAV +C + + L +R + + V E A
Sbjct: 326 RQDLLPSITFIFSRAGCDAAVA---------QCVSAGLWLTTEREQQVIARRVDEAAQDI 376
Query: 497 ---------------GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 541
GLL+G+AAHHAG LP +K +E+LF GLVK VFATETLA G+NM
Sbjct: 377 PSDDLDVLGFWSWRDGLLRGLAAHHAGMLPTFKEVVEKLFVEGLVKAVFATETLALGVNM 436
Query: 542 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 601
PAR+ VL L K + +T+ E Q+ GRAGRRGID GH V++ P L
Sbjct: 437 PARSVVLEKLDKFNGEAHVGITAGEYTQLTGRAGRRGIDVEGHAVVLWQPGTDPTAVAGL 496
Query: 602 LFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN 661
PL S F +Y M +NLLA Q GR AR+++E SF
Sbjct: 497 ASRRTYPLNSSFRPTYNMSINLLA-----------------QFGRP--RAREILESSFAQ 537
Query: 662 Y------VGSNVMLAAKDE-LCKIQKETDVLTSEISDDAIDRKSRRLLSEA 705
+ VG + +++E L QK +T + D + RR LS+A
Sbjct: 538 FQADRSVVGLARQVRSREESLAGFQKS---MTCHLGDFTEYSRLRRELSDA 585
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 15/154 (9%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSS 1061
G+ I GE +L ++ LR DL ++AA+ + LV + G++ R+
Sbjct: 800 GQKLRRIYGEKDLLISQSLRQGAFSDLDATEVAALASVLVYQAKREERGLRPRM------ 853
Query: 1062 IYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMD 1121
PS ++ ++++ S + +E++ + + + + WA G +E++
Sbjct: 854 ---PSVSLETAVDIVVREWSVLEDAEEENKLPLTGEPELGLVWPIFKWAKGKHLQEVLNG 910
Query: 1122 CALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQK 1155
L GD R +++ IDLL Q+ K+P +D RL +
Sbjct: 911 TDLAAGDFVRWVKQVIDLLDQLAKIPGLDPRLSR 944
>gi|375290896|ref|YP_005125436.1| putative helicase [Corynebacterium diphtheriae 241]
gi|376245728|ref|YP_005135967.1| putative helicase [Corynebacterium diphtheriae HC01]
gi|376251310|ref|YP_005138191.1| putative helicase [Corynebacterium diphtheriae HC03]
gi|376257127|ref|YP_005145018.1| putative helicase [Corynebacterium diphtheriae VA01]
gi|371580567|gb|AEX44234.1| putative helicase [Corynebacterium diphtheriae 241]
gi|372108358|gb|AEX74419.1| putative helicase [Corynebacterium diphtheriae HC01]
gi|372112814|gb|AEX78873.1| putative helicase [Corynebacterium diphtheriae HC03]
gi|372119644|gb|AEX83378.1| putative helicase [Corynebacterium diphtheriae VA01]
Length = 930
Score = 327 bits (839), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 222/608 (36%), Positives = 317/608 (52%), Gaps = 66/608 (10%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D+FQ +A G V+V APT +GKT++ E A ++ Q + FYTTP+
Sbjct: 14 FAARQKFPLDEFQIRGCQAVESGRGVLVCAPTGAGKTIVGEFAVSLAISQQTKCFYTTPI 73
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKF + + G++ VGLLTGD +INR+A I++MT E+LRNM+Y + L
Sbjct: 74 KALSNQKFHDLVKAHGEDKVGLLTGDVSINRDADIVVMTAEVLRNMIY------ADSEAL 127
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ +V+DE+H+LSD SRG VWEE I+ V +I LSATV+N++E W+ + G T
Sbjct: 128 DRLSHVVMDEIHFLSDSSRGPVWEEAILGLDASVNVIGLSATVSNSEEFGRWLNTVRGDT 187
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL--SLNYLQLSTSEVKPY---- 383
E+I S RPVPL + + PL E G +N +L + L+ +T++ Y
Sbjct: 188 EIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLVEHIERLEGTTTDGTEYGRAQ 246
Query: 384 -KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
K GG R R+ M S+N + H+LS A+ R D L L+ +DML
Sbjct: 247 LKAGGFRNRSR----AMGSDNRASRRSPHRLSDKH-RALSRP------DVLHILQEQDML 295
Query: 443 PAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE----------VELALKRFRILYPDAVR 491
PAI FIF+R GCDAA+ Q + +L E SE + + R+L R
Sbjct: 296 PAITFIFSRAGCDAALHQCMRSSLVLTTQEESEEISDIITAGVAGIPEEDLRLLEYRRWR 355
Query: 492 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
+ L++G AAHHAG LP ++ +E+LF +GLV+ VFATETLA GINMPART VL L
Sbjct: 356 Q----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFATETLALGINMPARTVVLEKL 411
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
K G LT + Q+ GRAGRRGID G+ V+ TP + L PLVS
Sbjct: 412 VKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWTPAMDPGQVAGLASTRTYPLVS 471
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 671
F Y M +NLL K + E A +L+E+SF + ++
Sbjct: 472 TFAPGYNMSVNLL---------------KTI----GFEPAHRLLEKSFAQFQADGSVVDD 512
Query: 672 KDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEMANLQEELKAEKRFRTEL--- 727
+ +++ D LT ++ A D + + ++ E ++ EL E+R L
Sbjct: 513 IKAIESLEESVDQLTKQLH-AAFDSHDQGGAGDVDSFLEYIRIRRELTEEERKHKRLSIE 571
Query: 728 RRRMELKR 735
+R ME R
Sbjct: 572 QRDMETTR 579
Score = 45.8 bits (107), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 100/232 (43%), Gaps = 14/232 (6%)
Query: 938 RTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL 997
R+ ++K D + E+ ++ + K E + G + F RI N++ E +
Sbjct: 694 RSHPAHHWRKREDLARVGEQLVREQRMLEAAQRKVNEATDTLG-RTFDRIINLLAEYDYV 752
Query: 998 DIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRL 1055
+ + VI GE I E++L +A L+ I DL PA+LA V + E +
Sbjct: 753 EFHDGVPVITEEGENLCQIHNESDLLVAQCLKRGIWDDLDPAELAGVVSMCTFENRRETR 812
Query: 1056 WKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTW 1115
+ +++ E + + N + + +E S + ++ + I + F+ + WA+G
Sbjct: 813 GEPDAATEEMAKAMNNTVRIWEELSSD----ERRYRLPITRYPEGGFALAMHQWAAGAPL 868
Query: 1116 REMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQRLQKNAVDA 1160
+ + L GD R R+ +DLL Q+ + +R + A+DA
Sbjct: 869 GYCIAAASESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRRAARKAIDA 920
>gi|419860816|ref|ZP_14383456.1| putative helicase [Corynebacterium diphtheriae bv. intermedius str.
NCTC 5011]
gi|387982500|gb|EIK56001.1| putative helicase [Corynebacterium diphtheriae bv. intermedius str.
NCTC 5011]
Length = 930
Score = 327 bits (839), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 222/608 (36%), Positives = 317/608 (52%), Gaps = 66/608 (10%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D+FQ +A G V+V APT +GKT++ E A ++ Q + FYTTP+
Sbjct: 14 FAARQKFPLDEFQIRGCQAVESGRGVLVCAPTGAGKTIVGEFAVSLAISQQTKCFYTTPI 73
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKF + + G++ VGLLTGD +INR+A I++MT E+LRNM+Y + L
Sbjct: 74 KALSNQKFHDLVKAHGEDKVGLLTGDVSINRDADIVVMTAEVLRNMIY------ADSEAL 127
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ +V+DE+H+LSD SRG VWEE I+ V +I LSATV+N++E W+ + G T
Sbjct: 128 DRLSHVVMDEIHFLSDSSRGPVWEEAILGLDASVNVIGLSATVSNSEEFGRWLNTVRGDT 187
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL--SLNYLQLSTSEVKPY---- 383
E+I S RPVPL + + PL E G +N +L + L+ +T++ Y
Sbjct: 188 EIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLVEHIERLEGTTTDGTEYGRAQ 246
Query: 384 -KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
K GG R R+ M S+N + H+LS A+ R D L L+ +DML
Sbjct: 247 LKAGGFRNRSR----AMGSDNRASRRSPHRLSDKH-RALSRP------DVLHILQEQDML 295
Query: 443 PAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE----------VELALKRFRILYPDAVR 491
PAI FIF+R GCDAA+ Q + +L E SE + + R+L R
Sbjct: 296 PAITFIFSRAGCDAALHQCMRSSLVLTTQEESEEISDIITAGVAGIPEEDLRLLEYRRWR 355
Query: 492 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
+ L++G AAHHAG LP ++ +E+LF +GLV+ VFATETLA GINMPART VL L
Sbjct: 356 Q----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFATETLALGINMPARTVVLEKL 411
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
K G LT + Q+ GRAGRRGID G+ V+ TP + L PLVS
Sbjct: 412 VKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWTPAMDPGQVAGLASTRTYPLVS 471
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 671
F Y M +NLL K + E A +L+E+SF + ++
Sbjct: 472 TFAPGYNMSVNLL---------------KTI----GFEPAHRLLEKSFAQFQADGSVVDD 512
Query: 672 KDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEMANLQEELKAEKRFRTEL--- 727
+ +++ D LT ++ A D + + ++ E ++ EL E+R L
Sbjct: 513 IKAIESLEESVDQLTKQLH-AAFDSHDQGGAGDVDSFLEYIRIRRELTEEERKHKRLSIE 571
Query: 728 RRRMELKR 735
+R ME R
Sbjct: 572 QRDMETTR 579
Score = 43.5 bits (101), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 13/188 (6%)
Query: 982 KEFLRISNVIHETRALDIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 1039
+ F RI N++ E ++ + VI GE I E++L +A L+ I DL PA+L
Sbjct: 737 RTFDRIINLLAEYDYVEFHDGVPVITEEGENLCQIHNESDLLVAQCLKRGIWDDLDPAEL 796
Query: 1040 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+ V + E + + +++ E + + N + + E + + ++ + + +
Sbjct: 797 SGVVSMCTFENRRETRGEPDAATEEMAKAMNNTVRIWKELSTD----ERRYRLPVTRYPE 852
Query: 1100 SQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQR 1152
F+ + WA+G + A L GD R R+ +DLL Q+ + +R
Sbjct: 853 GGFALAMHQWAAGAPLGYCIAAAAESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRR 912
Query: 1153 LQKNAVDA 1160
+ A+DA
Sbjct: 913 AARKAIDA 920
>gi|415726948|ref|ZP_11471176.1| helicase [Gardnerella vaginalis 00703Dmash]
gi|388062677|gb|EIK85282.1| helicase [Gardnerella vaginalis 00703Dmash]
Length = 877
Score = 327 bits (839), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 201/507 (39%), Positives = 283/507 (55%), Gaps = 77/507 (15%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI--FYTTPLKALS 215
F +D FQR +I+A ++V+V+APT +GKT++A+ A +A QR + FYTTP+KALS
Sbjct: 55 FDLDDFQREAIDALEAENNVLVAAPTGAGKTVVADFAVF--LAQQRNVKAFYTTPIKALS 112
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+ +F E +G NVGLLTGD+++N EA I++MTTE+LRNMLY++ ++S +
Sbjct: 113 NQKYHDFCEQYGSKNVGLLTGDTSVNPEADIVVMTTEVLRNMLYENSITLNS------LG 166
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELIT 335
++LDE+HYL+D RG VWEE+II+ PK V+II LSATV+N ++ + W+ + G T L+
Sbjct: 167 FVILDEIHYLADKFRGAVWEEVIIHLPKTVKIIGLSATVSNVEDFSAWLESVRGTTHLVV 226
Query: 336 SSRRPVPLTWYF------STKTALLPLLDE--KGKH-------MNRKLSLNYLQLSTSEV 380
RPVPL + T+ LL L D GK + RKL+ + +
Sbjct: 227 DEHRPVPLERHVVIQEDGRTEPELLDLYDRDNNGKETKRVNPALTRKLN-EWEHRARRRQ 285
Query: 381 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLR 437
Y D R R +K + G + K++ R P+ VID L +L
Sbjct: 286 DSYSDSKYRYRKGKKR--------IVRRGVAESDKST-----RRHTPKRWAVIDELDYL- 331
Query: 438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLL--DECEMSEVE------------------L 477
MLP I+FIF+R GCD AVQ + L+ + EM E+ L
Sbjct: 332 --GMLPGIYFIFSRSGCDQAVQQCLNAGLILTSDDEMYEIRKIVDNMVANQLSKEDLHAL 389
Query: 478 ALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAA 537
+ +RFR L +G AAHHAG + +++ +E LF+RGL+KVVFATETLA
Sbjct: 390 SFERFRF------------SLEQGFAAHHAGMIALFRHIVETLFERGLIKVVFATETLAL 437
Query: 538 GINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEE 597
G+NMPAR+ V+ L K +G + LT E Q+ GRAGRRGID+ GH VLV +
Sbjct: 438 GLNMPARSVVVEKLVKFDGTGHVPLTPGEFTQLTGRAGRRGIDDIGHAVLVDHADFVPAQ 497
Query: 598 CCKLLFAGVEPLVSQFTASYGMVLNLL 624
L V PL S F ++ M +NLL
Sbjct: 498 AAALSSKRVYPLHSSFVPTFNMAVNLL 524
>gi|254775080|ref|ZP_05216596.1| HelY [Mycobacterium avium subsp. avium ATCC 25291]
Length = 935
Score = 327 bits (839), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 216/629 (34%), Positives = 307/629 (48%), Gaps = 78/629 (12%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
E++++ +S F +D FQR + A RG V+V APT +GKT++ E A +A
Sbjct: 12 TELVELSRFSSELPFALDGFQRRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGG 71
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ FYTTPLKALSNQK + +G + +GLLTGD ++N +A +++MTTE+LRNMLY
Sbjct: 72 KCFYTTPLKALSNQKHTDLTARYGRDRIGLLTGDMSVNADAPVVVMTTEVLRNMLY---- 127
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LSATV+NA+E GW
Sbjct: 128 --ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGW 185
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 383
I + G T ++ RPVPL + L L D + + S V P
Sbjct: 186 IQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRNSEAPGQPSAG----REPRVNPN 241
Query: 384 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 443
R R+ AD S+ R + P D + L + +LP
Sbjct: 242 L---LRHIAHRREADRLSDWQPRRGAGRGRPPARAGRPRFYRTPGRPDVIATLDAEGLLP 298
Query: 444 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA--------- 494
AI F+F+R GCDAAVQ +C S ++L + R+ + +
Sbjct: 299 AITFVFSRAGCDAAVQ---------QCLRSPLQLTTQEERVQIAEVIEHRCGDLADADLA 349
Query: 495 -------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
+GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART V
Sbjct: 350 VLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVV 409
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
L L K + LT E Q+ GRAGRRGID GH V++ P E E + AG+
Sbjct: 410 LERLVKFNGEQHVALTPGEYTQLTGRAGRRGIDVEGHAVVLWNPTEETTEPSAV--AGLA 467
Query: 608 -----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F SY M +NL+ Q G E+A +L+EQSF Y
Sbjct: 468 STRTFPLRSSFAPSYNMTINLVQ-----------------QMG--PEQAHRLLEQSFAQY 508
Query: 663 VGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
++ + + Q D + +E+ +A E A ++ + +R
Sbjct: 509 QADRSVVGLVRGIERGQAMLDEIAAELGG-----------PKAPILEYARMRARISEMER 557
Query: 723 FRTELRRRMELKRFSALKDILKDFENGHL 751
++ R L R A D L G +
Sbjct: 558 AQSRASR---LHRRQAASDALAALRRGDI 583
>gi|398366119|ref|NP_013502.3| Ski2p [Saccharomyces cerevisiae S288c]
gi|8489004|sp|P35207.2|SKI2_YEAST RecName: Full=Antiviral helicase SKI2; AltName: Full=Superkiller
protein 2
gi|625114|gb|AAB82356.1| Ski2p: Antiviral protein [Saccharomyces cerevisiae]
gi|285813803|tpg|DAA09699.1| TPA: Ski2p [Saccharomyces cerevisiae S288c]
gi|392297900|gb|EIW08999.1| Ski2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1287
Score = 327 bits (839), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 193/527 (36%), Positives = 298/527 (56%), Gaps = 42/527 (7%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V L ++++ F +E+I A + F +D FQ+ ++ +G SV V+A TS+GK
Sbjct: 301 EWAHVVDLNHKIENF-DELIP--NPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 357
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A N + YT+P+KALSNQKFR+F+ETF D N+GL+TGD IN +A L
Sbjct: 358 TVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCL 417
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V+
Sbjct: 418 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 471
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-- 364
I LSATV N E A WIG+ K +I++ +RPVPL K L+P++++ + +
Sbjct: 472 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEA 531
Query: 365 NRKLSLNYLQLSTSEVKPYK--------------------DG-GSRRRNSRKHADMNSNN 403
N + L +++ P K DG G R ++R A+ +
Sbjct: 532 NFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSR 591
Query: 404 IVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED 463
+ G ++ + + + P++++ +LR R++LP + F+F+++ C+ +LE
Sbjct: 592 GAGAIGSNKRKFFTQDGPSKKTWPEIVN---YLRKRELLPMVVFVFSKKRCEEYADWLEG 648
Query: 464 CNLLDECEMSE----VELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIE 518
N + E S+ +E ++ R + D + + LL +G+A HH G LPI K IE
Sbjct: 649 INFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIE 708
Query: 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578
LF +G +KV+FATET A G+N+P RT + SS+ K +G +LT E QMAGRAGRRG
Sbjct: 709 ILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRG 768
Query: 579 IDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNLL 624
+D+ G V+++ + K + GV L SQF +Y M+LNLL
Sbjct: 769 LDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLL 815
>gi|117928413|ref|YP_872964.1| DSH domain-containing protein [Acidothermus cellulolyticus 11B]
gi|117648876|gb|ABK52978.1| DSH domain protein [Acidothermus cellulolyticus 11B]
Length = 906
Score = 327 bits (839), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 221/596 (37%), Positives = 304/596 (51%), Gaps = 81/596 (13%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A+ YDF +D FQ + A G SV+V+APT +GKT++ E A +A + FYTTP
Sbjct: 29 EFAAGYDFPLDPFQVEACRALEEGKSVLVAAPTGAGKTVVGEFAVHLALAGGVKCFYTTP 88
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+ +F G + VGLLTGD+ IN EA I++MTTE+LRNMLY + S
Sbjct: 89 IKALSNQKYLDFVRRHGPDRVGLLTGDNTINGEAPIIVMTTEVLRNMLY------AGSST 142
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DEVHYL D RG VWEE+II P+ V+++ LSATV+NA+E W+ + G
Sbjct: 143 LTGLGYVVMDEVHYLGDRFRGGVWEEVIINLPESVRLVALSATVSNAEEFGEWLITVRGA 202
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
TE+I RPVPL + L L E R+++ + ++ + + + +RR
Sbjct: 203 TEVIVDEHRPVPLWQHMLVGHRLFDLFVEVDG--ERRVNPHLIRATQEAARRRQLAETRR 260
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
SR+H RR ++ + L ++ +LPAI FIF+
Sbjct: 261 HRSRQHG------------------------RRRPTASRVEIVERLDAQGLLPAIIFIFS 296
Query: 451 RRGCDAAVQYLEDC-----NLLDECEMSEVE-LALKRFRILYPDAVREPA----IKGLLK 500
R GCD AV E+C L E EV+ +A R + +R ++GL +
Sbjct: 297 RNGCDQAV---EECLRSGLRLNRPEEADEVQAIAEARVAGIADGDLRALGYGTWVEGLRR 353
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+AAHHAG LPI+K +EELF GLVKVVFATETLA GINMPART VL L K
Sbjct: 354 GIAAHHAGMLPIFKETVEELFAAGLVKVVFATETLALGINMPARTVVLERLIKWNGEEHT 413
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE-----PLVSQFTA 615
+T E Q+ GRAGRRGID GH V+ AE+ AG+ PL S F
Sbjct: 414 PVTPGEYTQLTGRAGRRGIDVEGHAVVCW-----AEDVDPGAVAGLASRRTYPLRSSFRP 468
Query: 616 SYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDE- 674
SY M +NL+ Q GR E A L+E SF + ++ +
Sbjct: 469 SYNMAVNLVG-----------------QVGR--ERAHALLEASFAQFQADRAVVGLTRQI 509
Query: 675 ------LCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFR 724
L + Q+ + ++ A R+ + AA +E A L+ AE R
Sbjct: 510 RRNEATLAEYQRAMQCHLGDFAEYAALRRELSDVEAAASRETAQLRRAAAAESLLR 565
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 19/210 (9%)
Query: 969 LTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRN 1028
L +R+E S + F R+ +V+ + L + + G A + E +L A LR
Sbjct: 708 LRRRVEGRTGSLARTFDRVCDVLGDLGYL--AGEDVTEDGRRLARLYTELDLVAAECLRR 765
Query: 1029 KILLDLKPAQLAAVCASLV-----SEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSF 1083
+ L PA+LA A LV E VRL + E I+V L E
Sbjct: 766 GVWSGLTPAELAGAVAVLVYEPREDEPAVVRL--PAGRLAEACARTIDVWRDLTE----- 818
Query: 1084 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 1143
++++H + +F WA G ++++ + GD R R+ +DLL QI
Sbjct: 819 --VEQRHRLNFLREPSPRFVTAAYRWARGADLETILVEQDMSAGDFVRWTRQLVDLLGQI 876
Query: 1144 PKLPDVDQRLQKNAVDAS---NVMDRPPIS 1170
+ D D R A S V+D P++
Sbjct: 877 EQAADGDLRAVAAAAAGSLRRGVVDYTPVA 906
>gi|320534071|ref|ZP_08034614.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
gi|320133719|gb|EFW26124.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
Length = 986
Score = 327 bits (838), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 195/508 (38%), Positives = 272/508 (53%), Gaps = 50/508 (9%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
YDF +D FQ + A RG V+V+APT +GKT++ E A + + FYT P+KALS
Sbjct: 29 YDFPLDPFQEEACGALERGEGVLVAAPTGAGKTVVGEFAVHLGLVRGLKTFYTAPIKALS 88
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+ + G VGLLTGD+++N A +++MTTE+LRNMLY SG D+D
Sbjct: 89 NQKYLDLVARHGQERVGLLTGDTSVNPHADVVVMTTEVLRNMLY---------SGSRDLD 139
Query: 276 ---VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 332
+V+DEVHYL+D RG+VWEE+II+ P EVQ+I LSATV+NA+E W+GQ+ G+T
Sbjct: 140 RLGFVVMDEVHYLADRFRGSVWEEVIIHLPAEVQVISLSATVSNAEEFGDWLGQVRGRTA 199
Query: 333 LITSSRRPVPLTWYFSTKTALLPL---------------------LDEKGKHMNR-KLSL 370
++ S RPVPLT + LLPL L+++ + + L+
Sbjct: 200 VVVSEERPVPLTQHMMVGRRLLPLYSHPADPAEQSDQLDQSEQPELEQQAERTGQPPLNP 259
Query: 371 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV----TSFGQHQLSKNSINA-IRRSQ 425
L+ + GG + R ++ ++ G + A R +
Sbjct: 260 ELLKAVKQARRAAASGGGSKNGYRGRGGDSARGPQPWKRSARGGRAPRRGEGGARTARLK 319
Query: 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC--NLLDECEMSEVELALKRFR 483
P + + L +LPAI F+F+R GC+ AV + + +L E E + + ++R
Sbjct: 320 PPSRLQVVTALEGARLLPAIVFVFSRAGCEQAVHQVVNAGVDLTTEAEAARIREVIERRT 379
Query: 484 ILYPDAVREPAIKG-------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA 536
P + + G L +GVAAHHAG LP++K +EELF GLVKVV+ATETLA
Sbjct: 380 ADIPAG--DLGVLGFHFWAHALERGVAAHHAGLLPVFKETVEELFSAGLVKVVYATETLA 437
Query: 537 AGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE 596
GINMPART VL SL K S + L+ E Q+ GRAGRRGID GH V++
Sbjct: 438 LGINMPARTVVLESLRKWNGSAHVTLSPGEYTQLTGRAGRRGIDVEGHAVVLAADDVEPA 497
Query: 597 ECCKLLFAGVEPLVSQFTASYGMVLNLL 624
L PLVS F +Y M +NLL
Sbjct: 498 TVSSLASRRTYPLVSAFRPTYNMAVNLL 525
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 24/207 (11%)
Query: 958 KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVI------------HETRALDINTQVIF 1005
K R +A ++RL +RIE + + F + V+ H R L +
Sbjct: 755 KWSRARAEAERLQRRIETRTGTIARLFDAVCEVLLELGYLRPVDRGHPERELRVTGA--- 811
Query: 1006 PLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSI-YE 1064
G+ A I E +L +A LR + DL A+LA ++ V E RL + +
Sbjct: 812 --GKVLARIYAERDLLIAECLRTGVFEDLSAAELAGALSACVYE---PRLSAQSIGLPVA 866
Query: 1065 PSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCAL 1124
P + + + +L+ +E + +G V+AW G +++ L
Sbjct: 867 PGSRLGQCLRAQLGVSHRIHDLESLARIEASSGAEPALAGSVQAWCDGAQLADILDATEL 926
Query: 1125 DDGDLARLLRRTIDLLAQIPKL---PD 1148
GD R ++ +D++ QI L PD
Sbjct: 927 TAGDFVRWCKQLLDVVGQIASLSPPPD 953
>gi|227496136|ref|ZP_03926442.1| DEAD/DEAH box helicase domain protein [Actinomyces urogenitalis DSM
15434]
gi|226834370|gb|EEH66753.1| DEAD/DEAH box helicase domain protein [Actinomyces urogenitalis DSM
15434]
Length = 959
Score = 327 bits (838), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 197/496 (39%), Positives = 275/496 (55%), Gaps = 30/496 (6%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
++ A+ YDF +D FQ + +A RG V+V+APT +GKT++ E A +A R+ FY
Sbjct: 21 ELARFAAGYDFPLDDFQVAGCQAVERGEGVLVAAPTGAGKTIVGEFAVFLGLAKGRKTFY 80
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK+++ +G + VGLLTGD+++N A++++MTTE+LRNMLY SS
Sbjct: 81 TTPIKALSNQKYQDLAARYGQDKVGLLTGDTSVNPHAEVVVMTTEVLRNMLY------SS 134
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
L + +V+DEVHYL+D RG VWEE+II+ +VQ++ LSATV+NA+E W+G +
Sbjct: 135 SRDLDRLGFVVMDEVHYLADRFRGPVWEEVIIHLDPQVQVVSLSATVSNAEEFGDWLGHV 194
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLD---------EKGKHMNRKLSLNYLQLSTS 378
GKT ++ S RPVPLT + LL L ++ H + LN L
Sbjct: 195 RGKTAVVVSEHRPVPLTQHMMVGRRLLDLYSVPVALEDAHQEASHAAQP-PLNPDLLKAV 253
Query: 379 EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS 438
G SR A +++ H+ + +A R + P + + L
Sbjct: 254 RSARRAAAGQAGGYSRG-ARGGTHDTGGWRAPHRGRDGARSA--RLRPPSRLAVVDALEQ 310
Query: 439 RDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPAIK 496
+LPAI F+F+R GC+ AV L +L + E ++ + R P A + +
Sbjct: 311 AHLLPAIVFVFSRAGCEQAVSQLAAAGVDLTTQAEAEQIREVIDRRTSEIPAA--DLGVL 368
Query: 497 G-------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
G L +G AAHHAG LP++K +EELF GLVKVV+ATETLA GINMPART VL
Sbjct: 369 GFHSWAHALQRGYAAHHAGLLPVFKETVEELFSAGLVKVVYATETLALGINMPARTVVLE 428
Query: 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
SL K S + LT E Q+ GRAGRRGID GH V++ L PL
Sbjct: 429 SLRKWNGSAHVTLTPGEYTQLTGRAGRRGIDVEGHAVVLAADDVEPAFVSSLASRRTYPL 488
Query: 610 VSQFTASYGMVLNLLA 625
VS F +Y M +NLL+
Sbjct: 489 VSAFRPTYNMAVNLLS 504
Score = 42.4 bits (98), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 90/209 (43%), Gaps = 12/209 (5%)
Query: 964 ARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQ-------VIFPLGETAAAIRG 1016
A+++RLT+RIE+ + + F + V+ L Q + G A +
Sbjct: 734 AQAERLTERIERRTGTIARLFDAVCQVLVALGYLRPVAQQEPDGELAVTGAGRVLARVYA 793
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E +L +A LR + L ++LA ++ V E + + + + S ++ L
Sbjct: 794 ERDLLIAQCLRQGVWQGLGSSELAGAVSACVYE-PRANVASLSLPVAPGSALGRSLRQEL 852
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 1136
D R +L+ +E+ + + V+AWA G + +++ D + GD R R+
Sbjct: 853 DVARR-INDLEALARLELSAGAEPAMAAGVQAWAEGASLAQVLEDSEMTAGDFVRWSRQL 911
Query: 1137 IDLLAQIPKL-PDV--DQRLQKNAVDASN 1162
+D+L Q+ L PD DQ L + S
Sbjct: 912 LDVLGQLATLQPDSREDQALGSQVAEVSR 940
>gi|41407926|ref|NP_960762.1| HelY [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41396280|gb|AAS04145.1| HelY [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 821
Score = 327 bits (837), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 218/639 (34%), Positives = 308/639 (48%), Gaps = 98/639 (15%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
E++++ +S F +D FQR + A RG V+V APT +GKT++ E A +A
Sbjct: 12 TELVELTRFSSELPFALDGFQRRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGG 71
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ FYTTPLKALSNQK + +G + +GLLTGD ++N +A +++MTTE+LRNMLY
Sbjct: 72 KCFYTTPLKALSNQKHTDLTARYGRDRIGLLTGDMSVNADAPVVVMTTEVLRNMLY---- 127
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LSATV+NA+E GW
Sbjct: 128 --ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGW 185
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 383
I + G T ++ RPVPL + L L D + P
Sbjct: 186 IQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRNAE-----------------APG 228
Query: 384 KDGGSR--RRNS--------RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTL 433
+ G R R N R+ AD S+ R + P D +
Sbjct: 229 QPGAGREPRVNPDLLRHIAHRREADRLSDWQPRRGAGRGRPPARAGRPRFYRTPGRPDVI 288
Query: 434 WHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP 493
L + +LPAI F+F+R GCDAAVQ +C S ++L + R+ + +
Sbjct: 289 ATLDAEGLLPAITFVFSRAGCDAAVQ---------QCLRSPLQLTTQEERVQIAEVIEHR 339
Query: 494 A----------------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAA 537
+GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA
Sbjct: 340 CGDLADADLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLAL 399
Query: 538 GINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEE 597
GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P E E
Sbjct: 400 GINMPARTVVLERLVKFNGEQHVALTPGEYTQLTGRAGRRGIDVEGHAVVLWNPTEETTE 459
Query: 598 CCKLLFAGVE-----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEAR 652
+ AG+ PL S F SY M +NL+ Q G E+A
Sbjct: 460 PSAV--AGLASTRTFPLRSSFAPSYNMTINLVQ-----------------QMG--PEQAH 498
Query: 653 KLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMAN 712
+L+EQSF Y ++ + + Q D + +E+ +A E A
Sbjct: 499 RLLEQSFAQYQADRSVVGLVRGIERGQAMLDEIAAELGG-----------PKAPILEYAR 547
Query: 713 LQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHL 751
++ + +R +T R L R A D L G +
Sbjct: 548 MRARISEMERAQTRASR---LHRRQAASDALAALRRGDI 583
>gi|379754426|ref|YP_005343098.1| ATP-dependent DNA helicase HelY [Mycobacterium intracellulare
MOTT-02]
gi|378804642|gb|AFC48777.1| ATP-dependent DNA helicase HelY [Mycobacterium intracellulare
MOTT-02]
Length = 926
Score = 327 bits (837), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 222/631 (35%), Positives = 319/631 (50%), Gaps = 84/631 (13%)
Query: 145 EMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRR 204
E++++ A F +D FQ + A RG V+V APT +GKT++ E A +A +
Sbjct: 3 ELVELTRFAMDLPFSLDGFQHRACVALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGGK 62
Query: 205 IFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGM 264
FYTTPLKALSNQK + +G + +GLLTGD ++N +A +++MTTE+LRNMLY
Sbjct: 63 CFYTTPLKALSNQKHTDLTARYGRDRIGLLTGDMSVNADAPVVVMTTEVLRNMLY----- 117
Query: 265 VSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
+ L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LSATV+NA+E GWI
Sbjct: 118 -ADSPALRGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGWI 176
Query: 325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD--------EKGKHMNRKLSLNYLQLS 376
+ G T ++ RPVPL + L L D + G +++ + L+
Sbjct: 177 QTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRHSDAPEQPGAPREPRVNPDLLRHI 236
Query: 377 TSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL 436
T RR + + +D S G+ +L S R + P D + L
Sbjct: 237 TH-----------RREADRMSDWQPRR---SAGRGRLPARS-GRPRLYRTPARPDVIASL 281
Query: 437 RSRDMLPAIWFIFNRRGCDAAVQY-----LEDCNLLDECEMSEV------ELALKRFRIL 485
+ +LPAI F+F+R GCDAAVQ L+ + +++EV +LA +L
Sbjct: 282 DAEGLLPAITFVFSRAGCDAAVQQCLRSPLQLTTQEERAQIAEVIEHRCGDLADADLAVL 341
Query: 486 YPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
RE GLL+G+AAHHAG LP ++ +EELF GLV+ VFATETLA GINMPART
Sbjct: 342 GYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVRAVFATETLALGINMPART 397
Query: 546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 605
VL L K + LT E Q+ GRAGRRGID GH V++ P E E + AG
Sbjct: 398 VVLERLVKFNGEQHVALTPGEYTQLTGRAGRRGIDVEGHAVVLWNPTEETTEPSAV--AG 455
Query: 606 VE-----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 660
+ PL S F SY M +NL+ Q G E+A +L+EQSF
Sbjct: 456 LASTRTFPLRSSFAPSYNMTINLVQ-----------------QMG--PEQAHRLLEQSFA 496
Query: 661 NYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAE 720
Y ++ L + + D + EI+ + K A E A ++ +
Sbjct: 497 QYQADRSVVG----LVRGIERGDAMLGEIAGELGGPK-------APILEYARMRARISEM 545
Query: 721 KRFRTELRRRMELKRFSALKDILKDFENGHL 751
+R ++ R L+R A D L G +
Sbjct: 546 ERAQSRASR---LQRRQAASDALAALRRGDI 573
>gi|333028223|ref|ZP_08456287.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
gi|332748075|gb|EGJ78516.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
Length = 935
Score = 327 bits (837), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 203/516 (39%), Positives = 279/516 (54%), Gaps = 53/516 (10%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+Y+F +D FQ S +A G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 31 MYEFGLDPFQIESCQALEAGKGVLVAAPTGSGKTIVGEFAVHLALRQGKKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQKF + + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 91 SNQKFGDLSKRYGADKVGLLTGDNSVNADAPVVVMTTEVLRNMLY------AGSPALTGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE++
Sbjct: 145 GYVVMDEVHYLSDRIRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVV 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
S RPVPL + + L +E G R ++ + L+++ E GG RR
Sbjct: 205 VSEHRPVPLFQHVLAGRRMYDLFEEGGGR-KRAVNPDLLRMARMEAGRTGYGGKRRGREA 263
Query: 395 KHADMNSNNIVT-SFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453
T + G+ P+VID L S +LPAI FIF+R
Sbjct: 264 DRERERRQRSRTWTPGR----------------PEVID---RLDSEGLLPAITFIFSRAA 304
Query: 454 CDAAVQ--YLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPA----IKGLLKGVAAHH 506
C+AAVQ L DE E V E+ +R + P+ + ++GL +G+AAHH
Sbjct: 305 CEAAVQQCLFAGLRLNDESERLAVREIVEERTASIPPEDLHVLGYFEFLEGLERGIAAHH 364
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
AG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T E
Sbjct: 365 AGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITPGE 424
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
Q+ GRAGRRGID GH V++ E L PL S F SY M +NL+
Sbjct: 425 YTQLTGRAGRRGIDVEGHAVVLWQRAMSPEHLAGLAGTRTYPLRSSFRPSYNMAVNLVQ- 483
Query: 627 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
Q GR +R+L+E SF +
Sbjct: 484 ----------------QFGR--HRSRELLETSFAQF 501
Score = 48.9 bits (115), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 12/193 (6%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 1015
E+ RL +K+L +RIE + + F RI ++ E LD + + + G A +
Sbjct: 716 ERYHRLLRDTKQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGEQVTEHGRRLARLY 772
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 1075
GE +L + LR + L PA+LAA ++LV E R + + PS V + +
Sbjct: 773 GELDLLASECLRAGVWEGLGPAELAACASALVYES---RSGDDAGAPKVPSGKVTSALTE 829
Query: 1076 LDEHRSSFLELQEKHGVEIPCCL-----DSQFSGMVEAWASGLTWREMMMDCALDDGDLA 1130
+ ++E G+ + D F+ WASG E++ + + GD
Sbjct: 830 MVRLWGRLDAVEEDFGISRTEGVGQREPDLGFAWAAYEWASGKGLDEVLREAEMPAGDFV 889
Query: 1131 RLLRRTIDLLAQI 1143
R ++ ID+L QI
Sbjct: 890 RWTKQIIDVLGQI 902
>gi|254819635|ref|ZP_05224636.1| ATP-dependent DNA helicase HelY [Mycobacterium intracellulare ATCC
13950]
gi|379747121|ref|YP_005337942.1| ATP-dependent DNA helicase HelY [Mycobacterium intracellulare ATCC
13950]
gi|378799485|gb|AFC43621.1| ATP-dependent DNA helicase HelY [Mycobacterium intracellulare ATCC
13950]
Length = 926
Score = 327 bits (837), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 221/631 (35%), Positives = 319/631 (50%), Gaps = 84/631 (13%)
Query: 145 EMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRR 204
E++++ A+ F +D FQ + A RG V+V APT +GKT++ E A +A +
Sbjct: 3 ELVELTRFATDLPFALDGFQHRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGGK 62
Query: 205 IFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGM 264
FYTTPLKALSNQK + +G + +GLLTGD ++N +A +++MTTE+LRNMLY
Sbjct: 63 CFYTTPLKALSNQKHTDLTARYGRDRIGLLTGDMSVNADAPVVVMTTEVLRNMLY----- 117
Query: 265 VSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
+ L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LSATV+NA+E GWI
Sbjct: 118 -ADSPALRGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGWI 176
Query: 325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD--------EKGKHMNRKLSLNYLQLS 376
+ G T ++ RPVPL + L L D + G +++ + L+
Sbjct: 177 QTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRHSDAPEQPGAPREPRVNPDLLRHI 236
Query: 377 TSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL 436
T RR + + +D S G+ + S R + P D + L
Sbjct: 237 TH-----------RREADRMSDWQPRR---SAGRGRPPARS-GRPRLYRTPARPDVIASL 281
Query: 437 RSRDMLPAIWFIFNRRGCDAAVQY-----LEDCNLLDECEMSEV------ELALKRFRIL 485
+ +LPAI F+F+R GCDAAVQ L+ + +++EV +LA +L
Sbjct: 282 DAEGLLPAITFVFSRAGCDAAVQQCLRSPLQLTTQEERAQIAEVIEHRCGDLADADLAVL 341
Query: 486 YPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
RE GLL+G+AAHHAG LP ++ +EELF GLV+ VFATETLA GINMPART
Sbjct: 342 GYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVRAVFATETLALGINMPART 397
Query: 546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 605
VL L K + LT E Q+ GRAGRRGID GH V++ P E E + AG
Sbjct: 398 VVLERLVKFNGEQHVALTPGEYTQLTGRAGRRGIDVEGHAVVLWNPTEETTEPSAV--AG 455
Query: 606 VE-----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 660
+ PL S F SY M +NL+ Q G E+A +L+EQSF
Sbjct: 456 LASTRTFPLRSSFAPSYNMTINLVQ-----------------QMG--PEQAHRLLEQSFA 496
Query: 661 NYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAE 720
Y ++ L + + D + EI+ + K A E A ++ +
Sbjct: 497 QYQADRSVVG----LVRGIERGDAMLGEIAGELGGPK-------APILEYARMRARISEM 545
Query: 721 KRFRTELRRRMELKRFSALKDILKDFENGHL 751
+R ++ R L+R A D L G +
Sbjct: 546 ERAQSRASR---LQRRQAASDALAALRRGDI 573
>gi|427391856|ref|ZP_18886080.1| hypothetical protein HMPREF9233_01583 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425731823|gb|EKU94636.1| hypothetical protein HMPREF9233_01583 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 879
Score = 327 bits (837), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 204/529 (38%), Positives = 279/529 (52%), Gaps = 73/529 (13%)
Query: 144 NEMIDVDELASIYDFR---IDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA 200
NE + V + Y R +D+FQ + + R V+VSAPT SGKT++A A +A
Sbjct: 3 NESLLVTDYVESYRARGMTLDEFQVEACRSLARSRDVLVSAPTGSGKTVVAHFAVYLALA 62
Query: 201 NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQ 260
++RR YT P+KALSNQKF E RE G++NVGLLTGD INR+AQI+++TTE+LRNML
Sbjct: 63 SERRCVYTAPIKALSNQKFTELRELIGEDNVGLLTGDQTINRDAQIIVVTTEVLRNML-- 120
Query: 261 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 320
+ ++ + + VLDEVHYLSD RG VWEE I+ P+ V+++ LSAT+AN DEL
Sbjct: 121 ----LHADPEIENFGYAVLDEVHYLSDRDRGPVWEETILSLPEHVRLVSLSATIANTDEL 176
Query: 321 AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 380
A W+ + G T+LI S RPVPL + PL D+ R L E
Sbjct: 177 ASWMRSVRGPTDLIVSHTRPVPLEQSVALGKKFFPLYDDAAGSAPRPHPSLVNALRQRED 236
Query: 381 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 440
+P R+ D + I+ GQ L +R+
Sbjct: 237 EP----------PRRMGDKDRRRII---GQ-------------------------LANRE 258
Query: 441 MLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVR-----EP 493
MLPAI FIF+R+GCD AV L + L + E +++ + R R D+ R E
Sbjct: 259 MLPAIEFIFSRKGCDRAVDALLRREVVLTTDAERAQIREEIARLRDSMDDSNRRAVGFER 318
Query: 494 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
A + L +G AHHAG P K E+L + GL+++V+AT TLA GI+MP RT VL L++
Sbjct: 319 AAQALERGYGAHHAGVYPPLKELTEKLMEHGLLRIVYATGTLALGIDMPVRTVVLEELTR 378
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQF 613
+ + LT+ E Q+ GRAGRRG D G+ V++ AE +L VEPL+S F
Sbjct: 379 WNGTSFVDLTATEYTQLIGRAGRRGKDAVGYGVVMGNSQTDAEYLAELGSGKVEPLLSAF 438
Query: 614 TASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
SY V+NLL SD RS AR ++ +SF Y
Sbjct: 439 QPSYNTVINLL-----------SD--------RSYRSARDVMNRSFAQY 468
>gi|296269793|ref|YP_003652425.1| DSH domain-containing protein [Thermobispora bispora DSM 43833]
gi|296092580|gb|ADG88532.1| DSH domain protein [Thermobispora bispora DSM 43833]
Length = 904
Score = 326 bits (836), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 219/615 (35%), Positives = 311/615 (50%), Gaps = 73/615 (11%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
+YDF D+FQ + A G V+V+APT SGKT++ E A + R+ FYTTP+KA
Sbjct: 27 GLYDFEFDEFQLDACRALEAGDGVLVAAPTGSGKTVVGEFAVHLALRQGRKCFYTTPIKA 86
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD 273
LSNQK+ + +G VGLLTGD++IN EA +++MTTE+LRNMLY + S L
Sbjct: 87 LSNQKYNDLVRRYGAAKVGLLTGDNSINGEAPVVVMTTEVLRNMLY------AGSSTLSG 140
Query: 274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 333
+ +V+DEVHYL+D RG VWEE+II+ P+ V+++ LSATV+NA+E W+G++ G T +
Sbjct: 141 LAYVVMDEVHYLADRFRGAVWEEVIIHLPESVRLVALSATVSNAEEFGEWLGEVRGDTTV 200
Query: 334 ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 393
I RPVPL + L L G+ ++++ L++S E + ++ R
Sbjct: 201 IVDEHRPVPLWQHMLVGNRLYDLF-VTGRDGVQRVNPALLRISRDEARR-----AQLRGK 254
Query: 394 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453
R +A +R P+VI+ L + +LPAI FIF+R G
Sbjct: 255 RGYARPGR-------------------LRPPSRPEVIE---RLDAAGLLPAITFIFSRAG 292
Query: 454 CDAAVQYLE--DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL-------KGVAA 504
CDAAV L + E E+ P+ + A+ G L +G+AA
Sbjct: 293 CDAAVMQCRYAGIRLTTDEEREEIRRIADERTAFLPE--EDLAVLGYLEWRECLERGIAA 350
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HHAG LP +K +EELF +GLVK VFATETLA GINMPAR+ V+ L K LT
Sbjct: 351 HHAGMLPTFKEIVEELFTKGLVKAVFATETLALGINMPARSVVIEKLDKWNGETHADLTP 410
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E Q+ GRAGRRGID GH V++ P +L PL S F SY M +NL+
Sbjct: 411 GEYTQLIGRAGRRGIDVEGHAVVIWQPGMDPIGVARLAGTRTYPLRSSFQPSYNMAVNLV 470
Query: 625 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD- 683
Q GR E AR L+E SF + ++ +L K ++ +
Sbjct: 471 G-----------------QVGR--ERARLLLEDSFAQFQADRAVVGLARQLRKAEEALEG 511
Query: 684 ---VLTSEISDDAIDRKSRRLLSE-----AAYKEMANLQEELKAEKRFRTELRRRMELKR 735
+T + D + RR LSE A + MA + L++ + R R+ R
Sbjct: 512 YRQAMTCHLGDFQEYAEFRRRLSEREAELARQRGMARRAQTLRSLEALRPGDVIRVPGGR 571
Query: 736 FSALKDILKDFENGH 750
+ + +L NG
Sbjct: 572 RAGVAVVLDPGFNGR 586
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 112/250 (44%), Gaps = 11/250 (4%)
Query: 919 VENYKEQRTKVARLKKKIAR--TEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQI 976
V ++ + ++ RL++++ R G E + D ++ E K L+ ++ L +RIE
Sbjct: 655 VRDHAAEDEEITRLRRELRRHPCHGCSERE---DHARWAERYYKLLR-ETEALRRRIEGR 710
Query: 977 EPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKP 1036
+ F R+ V+ L+ T + G A + E +L A LR I L P
Sbjct: 711 SHVIARTFDRVCGVLERLGYLEGET--VTSEGWRLAKLYTELDLLTAECLRAGIWERLDP 768
Query: 1037 AQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPC 1096
A+LAA +SLV E R + P+ V + + + E++++HG+
Sbjct: 769 AELAACVSSLVYES---RQPDDGRRPRLPAGPVRDALAEMTRLWGELEEIEQEHGLSFTR 825
Query: 1097 CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKN 1156
D F WA G +++ + L GD R +++ +DLL Q+ ++ +++N
Sbjct: 826 EPDLGFVWAAYRWAKGCGLEDVLTETDLAAGDFVRWVKQILDLLDQLKEVAPEGGTVRQN 885
Query: 1157 AVDASNVMDR 1166
A+ A + M R
Sbjct: 886 AIKAMDAMRR 895
>gi|385676237|ref|ZP_10050165.1| ATP-dependent RNA helicase HelY [Amycolatopsis sp. ATCC 39116]
Length = 910
Score = 326 bits (836), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 202/517 (39%), Positives = 272/517 (52%), Gaps = 61/517 (11%)
Query: 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216
+F D FQ A G V+V APT +GKT++ E A +A R+ FYTTP+KALSN
Sbjct: 27 EFGFDDFQIRGCRALEDGHGVLVCAPTGAGKTVVGEFAVHLALAEGRKCFYTTPIKALSN 86
Query: 217 QKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276
QK+ + + +G VGLLTGD+AIN AQI++MTTE+LRNMLY + S + D+
Sbjct: 87 QKYGDLVQRYGAGTVGLLTGDTAINGNAQIVVMTTEVLRNMLY------AGSSAIDDLGY 140
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
+V+DE+HYL+D RG VWEE+I++ P+ V+++ LSATV+NA+E W+ + G T ++
Sbjct: 141 VVMDEIHYLADRFRGAVWEEVILHLPEYVRVVGLSATVSNAEEFGEWLVTVRGDTTVVVD 200
Query: 337 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 396
RPVPL + LL L + G +++ L+ EV R H
Sbjct: 201 EHRPVPLWQHMMVGNRLLDLFADDGSDGELRMNPGLLR-RVEEV------------GRMH 247
Query: 397 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
A + G S+ R + P +D + L + +LPAI FIF+R GCDA
Sbjct: 248 A---PAALRRGRGGRTYSRGP-----RFRPPSRVDMITRLDAAGLLPAIVFIFSRAGCDA 299
Query: 457 AVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP----AIKG-------LLKGVAAH 505
AV + L ++ E A + RI+ P + G L G+A H
Sbjct: 300 AVSQVTRSGL----RLNTPEEAAEVRRIVDTRTKDLPEGDLGVLGYWEWREALENGIAGH 355
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP +K +EELF RGLVKVVFATETLA GINMPART VL L K + LT
Sbjct: 356 HAGLLPAFKETVEELFVRGLVKVVFATETLALGINMPARTVVLERLVKYNGEAHVDLTPG 415
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E Q+ GRAGRRGID GH V+V P L PL S F Y M +NL+
Sbjct: 416 EYTQLTGRAGRRGIDVEGHAVVVWQPGVDPNAVAGLASTRTYPLRSSFRPGYNMAINLV- 474
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
A++ H E+AR+L+EQSF +
Sbjct: 475 -AQLGH-----------------EQARELLEQSFAQF 493
Score = 48.1 bits (113), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 15/195 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL +++L +R+ S + F RI ++ E L + G A +
Sbjct: 692 ERYHRLAGETEQLERRVAATTHSLARAFDRIRALLAERGYLAEGEDRVTEHGARLARLYS 751
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E++L A +R+ + L P +LAAV ++LV E S EP V
Sbjct: 752 ESDLLAAECIRHGVWEGLTPPELAAVVSTLVFEA-------RRDSPGEPRLPAGGVPKAW 804
Query: 1077 DEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGD 1128
E + +L E +H ++ D+ F+ V WA G + +++ L GD
Sbjct: 805 QETAKIWTDLAEDERRHRLDRTREPDAGFAWPVYRWARGESLEKVLTAADANGQELSAGD 864
Query: 1129 LARLLRRTIDLLAQI 1143
R R+ +DLL QI
Sbjct: 865 FVRWSRQVVDLLDQI 879
>gi|403527393|ref|YP_006662280.1| helicase HelY [Arthrobacter sp. Rue61a]
gi|403229820|gb|AFR29242.1| putative helicase HelY [Arthrobacter sp. Rue61a]
Length = 991
Score = 326 bits (836), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 214/573 (37%), Positives = 287/573 (50%), Gaps = 100/573 (17%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A DF +D FQR + + G V+V+APT +GKT++ E A + + FYTTP+
Sbjct: 31 FARTLDFDLDDFQREACRSLQEGRGVLVAAPTGAGKTIVGEFAIYLALERGLKAFYTTPI 90
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ E +G NVGLLTGD+ IN EA +++MTTE+LRNMLY SE+ L
Sbjct: 91 KALSNQKYSELAAKYGPANVGLLTGDTTINGEASVVVMTTEVLRNMLY-----ADSET-L 144
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
D+ +V+DEVHYL+D RG VWEE+II+ P EVQ+ LSATV+NA+E W+ + G T
Sbjct: 145 GDLGFVVMDEVHYLADRFRGAVWEEVIIHLPSEVQVASLSATVSNAEEFGAWLDTVRGDT 204
Query: 332 ELITSSRRPVPLTWYFSTKTALLPL------LDEKGKHMNRKLSLNYLQLSTS-EVKPYK 384
++I S RPVPL + ++ L DE LS + EV
Sbjct: 205 DVIVSEHRPVPLWQHVMVGREIVDLFAGDTTFDEIAPQAPGARETEVPDLSEADEVLTEP 264
Query: 385 DGGSRRRNSRKHADMNS-------------------------NNIVTSFGQ--------- 410
RRR + K N+ N+ FG
Sbjct: 265 APTDRRRPAAKRMSANTVRQAVTGPEFEVNPDLLAMARSESRMNMNGRFGHGGRSRRRQD 324
Query: 411 -----HQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
Q S+ + +R++ PQVI++ LR +D+LPAI FIF+R GCDAAV
Sbjct: 325 RYRDERQQSEQR-SPVRKASRPQVIES---LRRQDLLPAITFIFSRAGCDAAVA------ 374
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-----PA-----------IKGLLKGVAAHHAGC 509
+C S + L +R + + V E PA GL++G AAHHAG
Sbjct: 375 ---QCAASGLWLTTEREQQIIAQRVDEASHEIPADDLDVLGFWGWRDGLVRGFAAHHAGM 431
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP +K +E+LF GLVK VFATETLA G+NMPAR VL L K + +T+ E Q
Sbjct: 432 LPTFKEVVEKLFADGLVKAVFATETLALGVNMPARCVVLEKLEKFNGEAHVNITAGEYTQ 491
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
+ GRAGRRGID GH V++ P L PL S F +Y M +NL+A
Sbjct: 492 LTGRAGRRGIDVEGHAVVLWQPGTDPAAVAGLASRRTYPLNSSFRPTYNMSINLIA---- 547
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
Q GR AR+++E SF +
Sbjct: 548 -------------QFGRV--RAREILESSFAQF 565
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 113/243 (46%), Gaps = 24/243 (9%)
Query: 924 EQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKE 983
+Q K+A L++ + R + D +++E K L+ + L ++I+ + K
Sbjct: 742 DQEKKIADLRRAL-RAHPCHGCSEREDHARWSERWWK-LRRETDGLVRQIQGRTNTIAKT 799
Query: 984 FLRISNVIHETRAL---DINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 1040
F R+ +V+ L D I G+ I GE +L ++ +R + DL A+LA
Sbjct: 800 FDRVCDVLSVYGYLETSDAGHVTISTDGQRLRRIYGEKDLLISQTVRRGAINDLDAAELA 859
Query: 1041 AVCASLVSE------GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEI 1094
+ ++LV + G++ ++ PS ++ + I+++ S + +E++ +
Sbjct: 860 SFASTLVYQAKREDRGLRPKM---------PSVSLESAIDIVIREWSQLEDTEERN--RL 908
Query: 1095 PCCLDSQFSGM--VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 1152
P + + M + WA G ++++ L GD R ++ +DLL Q+ K+P +D R
Sbjct: 909 PLTGEPELGLMWPMYKWAKGRHLQDVLSGTDLAAGDFVRWAKQVVDLLDQLAKIPQLDPR 968
Query: 1153 LQK 1155
L +
Sbjct: 969 LAR 971
>gi|349580095|dbj|GAA25256.1| K7_Ski2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1287
Score = 326 bits (836), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 196/527 (37%), Positives = 297/527 (56%), Gaps = 42/527 (7%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V L ++++ F +E+I A + F +D FQ+ ++ +G SV V+A TS+GK
Sbjct: 301 EWAHVVDLNHKIENF-DELIP--NPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 357
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A N + YT+P+KALSNQKFR+F+ETF D N+GL+TGD IN +A L
Sbjct: 358 TVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCL 417
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V+
Sbjct: 418 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 471
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-- 364
I LSATV N E A WIG+ K +I++ +RPVPL K L+P++++ + +
Sbjct: 472 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEA 531
Query: 365 NRKLSLNYLQLSTSEVKPYKD-------------GGSRRRNSRKHADMNSN---NIVTSF 408
N + L ++ P K GGS R R D ++ N S
Sbjct: 532 NFRKHKEILNGESANGAPSKTDNGRGGSTARGGRGGSNTRGGRGGRDNSTRGGANRGGSR 591
Query: 409 GQHQLSKN-----SINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED 463
G + N + + + P++++ +LR R++LP + F+F+++ C+ +LE
Sbjct: 592 GAGAIGSNKRKFFTQDGPSKKTWPEIVN---YLRKRELLPMVVFVFSKKRCEEYADWLEG 648
Query: 464 CNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KGLL-KGVAAHHAGCLPIWKSFIE 518
N + E S++ + +++ R+ P I + LL +G+A HH G LPI K IE
Sbjct: 649 INFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIE 708
Query: 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578
LF +G +KV+FATET A G+N+P RT + SS+ K +G +LT E QMAGRAGRRG
Sbjct: 709 ILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRG 768
Query: 579 IDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNLL 624
+D+ G V+++ + K + GV L SQF +Y M+LNLL
Sbjct: 769 LDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLL 815
>gi|119963790|ref|YP_947928.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
gi|119950649|gb|ABM09560.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
Length = 991
Score = 326 bits (836), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 211/572 (36%), Positives = 288/572 (50%), Gaps = 98/572 (17%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A DF +D FQR + + G V+V+APT +GKT++ E A + + FYTTP+
Sbjct: 31 FARTLDFDLDDFQREACRSLQEGRGVLVAAPTGAGKTIVGEFAIYLALERGLKAFYTTPI 90
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ E +G NVGLLTGD+ IN EA +++MTTE+LRNMLY SE+ L
Sbjct: 91 KALSNQKYSELAAKYGPANVGLLTGDTTINGEAPVVVMTTEVLRNMLY-----ADSET-L 144
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
D+ +V+DEVHYL+D RG VWEE+II+ P EVQ+ LSATV+NA+E W+ + G T
Sbjct: 145 GDLGFVVMDEVHYLADRFRGAVWEEVIIHLPSEVQVASLSATVSNAEEFGAWLDTVRGDT 204
Query: 332 ELITSSRRPVPLTWYFSTKTALLPL------LDEKGKHMNRKLSLNYLQLSTS-EVKPYK 384
++I S RPVPL + ++ L DE LS + EV
Sbjct: 205 DVIVSEHRPVPLWQHVMVGREIVDLFAGDTTFDEIAPQAPGARETEVPDLSEADEVLTEP 264
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQL-----------SKNSINA------------- 420
RRR + K N+ + + ++ S+ ++N
Sbjct: 265 APTDRRRPAAKRMSANTVRQAVTGPEFEVNPDLLAMARSESRMNMNGRFGHGGRSRRRQD 324
Query: 421 --------------IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL 466
+R++ PQVI++ LR +D+LPAI FIF+R GCDAAV
Sbjct: 325 RYRDDRQQSEQRSPVRKASRPQVIES---LRRQDLLPAITFIFSRAGCDAAVA------- 374
Query: 467 LDECEMSEVELALKRFRILYPDAVRE-----PA-----------IKGLLKGVAAHHAGCL 510
+C S + L +R + + V E PA GL++G AAHHAG L
Sbjct: 375 --QCAASGLWLTTEREQQIIAQRVDEASHEIPADDLDVLGFWGWRDGLVRGFAAHHAGML 432
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
P +K +E+LF GLVK VFATETLA G+NMPAR VL L K + +T+ E Q+
Sbjct: 433 PTFKEVVEKLFADGLVKAVFATETLALGVNMPARCVVLEKLEKFNGEAHVNITAGEYTQL 492
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 630
GRAGRRGID GH V++ P L PL S F +Y M +NL+A
Sbjct: 493 TGRAGRRGIDVEGHAVVLWQPGTDPAAVAGLASRRTYPLNSSFRPTYNMSINLIA----- 547
Query: 631 HLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
Q GR AR+++E SF +
Sbjct: 548 ------------QFGRV--RAREILESSFAQF 565
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 113/243 (46%), Gaps = 24/243 (9%)
Query: 924 EQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKE 983
+Q K+A L++ + R + D +++E K L+ + L ++I+ + K
Sbjct: 742 DQEKKIADLRRAL-RAHPCHGCSEREDHARWSERWWK-LRRETDGLVRQIQGRTNTIAKT 799
Query: 984 FLRISNVIHETRAL---DINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 1040
F R+ +V+ L D I G+ I GE +L ++ +R + DL A+LA
Sbjct: 800 FDRVCDVLSVYGYLETSDAGHVTISTDGQRLRRIYGEKDLLISQTVRRGAINDLDAAELA 859
Query: 1041 AVCASLVSE------GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEI 1094
+ ++LV + G++ ++ PS ++ + I+++ S + +E++ +
Sbjct: 860 SFASTLVYQAKREDRGLRPKM---------PSVSLESAIDIVIREWSQLEDTEERN--RL 908
Query: 1095 PCCLDSQFSGM--VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 1152
P + + M + WA G ++++ L GD R ++ +DLL Q+ K+P +D R
Sbjct: 909 PLTGEPELGLMWPMYKWAKGRHLQDVLSGTDLAAGDFVRWAKQVVDLLDQLAKIPQLDPR 968
Query: 1153 LQK 1155
L +
Sbjct: 969 LAR 971
>gi|453382310|dbj|GAC83193.1| putative helicase [Gordonia paraffinivorans NBRC 108238]
Length = 931
Score = 326 bits (836), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 212/532 (39%), Positives = 291/532 (54%), Gaps = 51/532 (9%)
Query: 146 MIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205
M +D S+ DF +D FQR + EA G V+V APT +GKT++ E A +A +
Sbjct: 1 MTHLDAFTSLLDFGLDDFQRRACEALEAGHGVLVCAPTGAGKTIVGEFAVHLALAGGTKC 60
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
FYTTP+KALSNQK+ + G +VGLLTGDS+IN +A +++MTTE++RNM+Y
Sbjct: 61 FYTTPIKALSNQKYADLVAVHGHESVGLLTGDSSINPDAPVVVMTTEVVRNMIY------ 114
Query: 266 SSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
+ES D + +V+DEVH+L+D RG VWEE+I++ V+++ LSATV+NA+E WI
Sbjct: 115 -AESRALDGLSHVVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLSATVSNAEEFGDWI 173
Query: 325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 384
+ G T +I RPVPL+ + L L D + R+ + V P
Sbjct: 174 QTVRGDTSVIVDEHRPVPLSQHMLVGNRLFDLFDPADRAPERRTG------ARPRVNPDL 227
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFG--QHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
R R D + G +H+ + ++ + R + V+D +L
Sbjct: 228 KRQIRHRILLAEDDREARGRGRRSGAPRHRGGRGAV--LSRPHMVGVLD------REGLL 279
Query: 443 PAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRF---------RILYPDAVR 491
PAI FIF+R GCDAA+ Q L +LL E + V+ + R +L D R
Sbjct: 280 PAIDFIFSRAGCDAALSQCLRSGLSLLAPEEAAAVDEVVDRHLSDLSPGDADVLGVDEWR 339
Query: 492 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
E GL +G+AAHHAG LP+++ +EELF +GLVK+VFATETLA GINMPAR+ VL L
Sbjct: 340 E----GLRRGLAAHHAGLLPMFRHAVEELFVKGLVKMVFATETLALGINMPARSVVLQRL 395
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
K + LT E Q+ GRAGRRGID GH V+V TP EE L A PL S
Sbjct: 396 VKYNGESHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWTPEVVPEEVAGLAGARTFPLRS 455
Query: 612 QFTASYGMVLNL-----LAGAK-VMHLSNESDDMKALQAGRS-LEEARKLVE 656
F+ Y M +NL L GA+ ++H S QA RS + +ARKL E
Sbjct: 456 SFSPEYNMAVNLLDRLGLDGARELLHRS-----FAQFQADRSVVGQARKLHE 502
Score = 44.3 bits (103), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 17/177 (9%)
Query: 1000 NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIK-----VR 1054
+T + G + I E++L + +R + +L P+ LAAV A+LV E + +
Sbjct: 754 HTMRVTDAGRVLSRIYSESDLVVTECIRAGVWEELSPSDLAAVVAALVFESRRDSYGGID 813
Query: 1055 LWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLT 1114
+ S+ +++ N ++ +H V D+ FS V WASG +
Sbjct: 814 TMPGSRSLRVALGATVDIWN-------RVTAVEARHRVTPTREPDTGFSLAVATWASGRS 866
Query: 1115 WREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
E ++ L GD R R+ IDLL QI D RL A A + R
Sbjct: 867 LTEALVLAGERGQLLSPGDFVRWNRQVIDLLEQIRLCVGTDTRLGGTARAAVKAIRR 923
>gi|38233827|ref|NP_939594.1| helicase [Corynebacterium diphtheriae NCTC 13129]
gi|38200088|emb|CAE49768.1| Putative helicase [Corynebacterium diphtheriae]
Length = 930
Score = 326 bits (835), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 221/608 (36%), Positives = 317/608 (52%), Gaps = 66/608 (10%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D+FQ +A G V+V APT +GKT++ E A ++ Q + FYTTP+
Sbjct: 14 FAARQKFPLDEFQIRGCQAVESGRGVLVCAPTGAGKTIVGEFAVSLAISQQTKCFYTTPI 73
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKF + + G++ VGLLTGD +INR+A I++MT E+LRNM+Y + L
Sbjct: 74 KALSNQKFHDLVKAHGEDKVGLLTGDVSINRDADIVVMTAEVLRNMIY------ADSEAL 127
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ +V+DE+H+LSD SRG VWEE I+ V +I LSATV+N++E W+ + G T
Sbjct: 128 DRLSHVVMDEIHFLSDSSRGPVWEEAILGLDASVNVIGLSATVSNSEEFGRWLNTVRGDT 187
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL--SLNYLQLSTSEVKPY---- 383
E+I S RPVPL + + PL E G +N +L + L+ +T++ Y
Sbjct: 188 EIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLVEHIERLEGTTTDGTEYGRAQ 246
Query: 384 -KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
K GG R R+ M S+N + H+LS A+ R D L L+ ++ML
Sbjct: 247 LKAGGFRNRSR----AMGSDNRASRRSPHRLSDKH-RALSRP------DVLHILQEQNML 295
Query: 443 PAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE----------VELALKRFRILYPDAVR 491
PAI FIF+R GCDAA+ Q + +L E SE + + R+L R
Sbjct: 296 PAITFIFSRAGCDAALHQCMRSSLVLTTQEESEEISDIITAGVAGIPEEDLRLLEYRRWR 355
Query: 492 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
+ L++G AAHHAG LP ++ +E+LF +GLV+ VFATETLA GINMPART VL L
Sbjct: 356 Q----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFATETLALGINMPARTVVLEKL 411
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
K G LT + Q+ GRAGRRGID G+ V+ TP + L PLVS
Sbjct: 412 VKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWTPAMDPGQVAGLASTRTYPLVS 471
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 671
F Y M +NLL K + E A +L+E+SF + ++
Sbjct: 472 TFAPGYNMSVNLL---------------KTI----GFEPAHRLLEKSFAQFQADGSVVDD 512
Query: 672 KDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEMANLQEELKAEKRFRTEL--- 727
+ +++ D LT ++ A D + + ++ E ++ EL E+R L
Sbjct: 513 IKAIESLEESVDQLTKQLH-AAFDSHDQGGAGDVDSFLEYIRIRRELTEEERKHKRLSIE 571
Query: 728 RRRMELKR 735
+R ME R
Sbjct: 572 QRDMETTR 579
Score = 44.3 bits (103), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 100/232 (43%), Gaps = 14/232 (6%)
Query: 938 RTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL 997
R+ ++K D + E+ ++ + K E + G + F RI N++ E +
Sbjct: 694 RSHPAHHWRKREDLARVGEQLVREQRMLEAAQRKVNEATDTLG-RTFDRIINLLAEYDYV 752
Query: 998 DIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRL 1055
+ + VI GE I E++L +A L+ I DL PA+L+ V + E +
Sbjct: 753 EFHDGVPVITEEGENLCQIHNESDLLVAQCLKRGIWDDLDPAELSGVVSMCTFENRRETR 812
Query: 1056 WKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTW 1115
+ +++ E + + N + + +E + + ++ + + + F+ + WA+G
Sbjct: 813 GEPDAATEEMAKAMNNTVRIWEELSTD----ERRYRLPVTRYPEGGFALAMHQWAAGAPL 868
Query: 1116 REMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQRLQKNAVDA 1160
+ A L GD R R+ +DLL Q+ + +R + A+DA
Sbjct: 869 GYCIAAAAESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRRAARKAIDA 920
>gi|256825235|ref|YP_003149195.1| superfamily II RNA helicase [Kytococcus sedentarius DSM 20547]
gi|256688628|gb|ACV06430.1| superfamily II RNA helicase [Kytococcus sedentarius DSM 20547]
Length = 953
Score = 326 bits (835), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 198/531 (37%), Positives = 278/531 (52%), Gaps = 50/531 (9%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F++D FQ ++ EA G +V+APT +GKT++ E A +A R+ FYTTP+KALSNQ
Sbjct: 29 FQLDDFQVTACEAVEDGKGALVAAPTGAGKTVVGEFAVHLALATGRKCFYTTPIKALSNQ 88
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + + +G+ NVGLLTGDS++N A +++MTTE+LRNMLY S S L + +
Sbjct: 89 KYHDLAQEYGEANVGLLTGDSSVNGNAPVVVMTTEVLRNMLY------SDSSTLAGLGFV 142
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVHYL+D RG VWEE+I++ P +VQ+I LSATV+NA+E W+ Q+ G TE++ S
Sbjct: 143 VMDEVHYLADRMRGVVWEEVILHLPDDVQVISLSATVSNAEEFGAWLKQVRGDTEVVVSE 202
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLS-------LNYLQLSTSEVKP-YKDGGSR 389
RPVPL + L L E G R + + L+ + +E +++
Sbjct: 203 VRPVPLWQHMMVGNDLYDLFPEGGVGARRGSASAVNPELMARLRTAQAERTAWHREDSGG 262
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R S H R + P + L + +LPAI FIF
Sbjct: 263 PAGRRGRGRRGSGRARDDHRDHGGPSRGGPPTRGTGTPSRTQVVQALHADGLLPAIVFIF 322
Query: 450 NRRGCDAAVQYL-----------EDCNLLDECEMSEVELALKRFRIL-YPDAVREPAIKG 497
+R GCD+AV+ L E + DE E +++A + +L Y D V +G
Sbjct: 323 SRIGCDSAVRQLLASGTRLISDEEGEAIHDEVEARVLQVAPEDLGVLGYHDFV-----EG 377
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
L G AAHHAG LP+++ +EELF G ++ VFATETLA G+NMPART V+ L K
Sbjct: 378 LTNGYAAHHAGMLPLFREIVEELFAAGRIQCVFATETLALGVNMPARTTVIEKLVKFNGE 437
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
LT E Q+ GRAGRRGID GH V++ P L PL S F S
Sbjct: 438 NHADLTPAEYTQLTGRAGRRGIDVEGHAVVLSGPRVDPTHVAGLASTRTFPLKSSFRPSP 497
Query: 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVM 668
M +NL+ + GR + AR+L+E+SF + M
Sbjct: 498 NMAVNLVE-----------------RMGR--QSARELLEESFAQFQADRAM 529
>gi|440777450|ref|ZP_20956252.1| HelY [Mycobacterium avium subsp. paratuberculosis S5]
gi|436722244|gb|ELP46235.1| HelY [Mycobacterium avium subsp. paratuberculosis S5]
Length = 821
Score = 326 bits (835), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 217/639 (33%), Positives = 308/639 (48%), Gaps = 98/639 (15%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
E++++ +S F +D FQR + A RG V+V APT +GKT++ E A +A
Sbjct: 12 TELVELTRFSSELPFALDGFQRRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGG 71
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ FYTTPLKALSNQK + +G + +GLLTGD ++N +A +++MTTE+LRNMLY
Sbjct: 72 KCFYTTPLKALSNQKHTDLTARYGRDRIGLLTGDMSVNADAPVVVMTTEVLRNMLY---- 127
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LSATV+NA+E GW
Sbjct: 128 --ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGW 185
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 383
I + G T ++ RPVPL + L L D + P
Sbjct: 186 IQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRNAE-----------------APG 228
Query: 384 KDGGSR--RRNS--------RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTL 433
+ G R R N R+ AD S+ R + P D +
Sbjct: 229 QPGAGREPRVNPDLLRHIAHRREADRLSDWQPRRGAGRGRPPARAGRPRFYRTPGRPDVI 288
Query: 434 WHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP 493
L + +LPAI F+F+R GCDAAVQ +C S ++L + R+ + +
Sbjct: 289 ATLDAEGLLPAITFVFSRAGCDAAVQ---------QCLRSPLQLTTQEERVQIAEVIEHR 339
Query: 494 A----------------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAA 537
+GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA
Sbjct: 340 CGDLADADLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLAL 399
Query: 538 GINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEE 597
GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P E E
Sbjct: 400 GINMPARTVVLERLVKFNGEQHVALTPGEYTQLTGRAGRRGIDVEGHAVVLWNPTEETTE 459
Query: 598 CCKLLFAGVE-----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEAR 652
+ AG+ PL S F SY M +NL+ Q G E+A
Sbjct: 460 PSAV--AGLASTRTFPLRSSFAPSYNMTINLVQ-----------------QMG--PEQAH 498
Query: 653 KLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMAN 712
+L+EQSF Y ++ + + Q D + +E+ +A E A
Sbjct: 499 RLLEQSFAQYQADRSVVGLVRGIERGQAMLDEIAAELGG-----------PKAPILEYAR 547
Query: 713 LQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHL 751
++ + +R ++ R L R A D L G +
Sbjct: 548 MRARISEMERAQSRASR---LHRRQAASDALAALRRGDI 583
>gi|300781203|ref|ZP_07091057.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
genitalium ATCC 33030]
gi|300532910|gb|EFK53971.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
genitalium ATCC 33030]
Length = 918
Score = 326 bits (835), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 207/594 (34%), Positives = 306/594 (51%), Gaps = 73/594 (12%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+DE + F +D FQ + +A V+V APT SGKT++ E A ++ + FYT
Sbjct: 9 LDEFRATKSFPLDDFQVEACQAVEEDRGVLVCAPTGSGKTVVGEFAVSLALSRGTKCFYT 68
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + + G++ VGLLTGD +IN A+I++MTTE+LRNM+Y +
Sbjct: 69 TPIKALSNQKYHDLVDEHGEDAVGLLTGDVSINGNAEIVVMTTEVLRNMIY------AGS 122
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
S L + +V+DE+HYL+D RG VWEEII+ + +II LSATV+N++E W+ ++
Sbjct: 123 SALDRLSHVVMDEIHYLADRDRGAVWEEIILNLEESARIIGLSATVSNSEEFGEWLHEVR 182
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD----EKGKHMNRKLSLNYLQLSTSEVKPYK 384
G T +I S +RPVPL Y + ++PL + E ++N+ L +L + +
Sbjct: 183 GDTAVIVSEKRPVPLNQYMMVQRKIMPLFEPGAVEAPGNVNKDLERAIERLESGAANEGR 242
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
D + + R A G + + IR P+V++ L R RDMLPA
Sbjct: 243 DDFRQGKGFRSRAG----------GGRSGAPRGQDRIRPVGRPEVVEAL---RGRDMLPA 289
Query: 445 IWFIFNRRGCDAAV----QYLEDCNLLDECE------------MSEVELALKRFRILYPD 488
I FIF+R GCD A+ + ++ +E E + E +L + FR L
Sbjct: 290 IVFIFSRAGCDGALFQCLRSRKELTTQEEAERIKQIADEGVEGIPEEDLEVLNFRQLR-- 347
Query: 489 AVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
+G AAHHAG LP +K +E+LF GLV+VVFATETLA GINMPART VL
Sbjct: 348 -------TAWSRGFAAHHAGLLPAFKHIVEQLFVEGLVRVVFATETLALGINMPARTVVL 400
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
L K + LT + Q+ GRAGRRGID G+ V+ P E L P
Sbjct: 401 EKLVKFNGDAHVDLTPGQYTQLTGRAGRRGIDTIGNAVVQWAPAMDPREVAGLASTRTYP 460
Query: 609 LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVM 668
L+S FT Y M +N+L M+ E++ +L+E+SF + +
Sbjct: 461 LISLFTPGYNMAINMLQ----MN---------------GFEDSIRLIEKSFAQFQTDRSV 501
Query: 669 LAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
+ + + + + D L +E+ D A S L+ E NL+ +L E++
Sbjct: 502 VGEVRTIERQRAKVDTLRAELIDAAGADVSDDLM------EYMNLRRDLTEEEK 549
>gi|289772656|ref|ZP_06532034.1| helicase [Streptomyces lividans TK24]
gi|289702855|gb|EFD70284.1| helicase [Streptomyces lividans TK24]
Length = 944
Score = 326 bits (835), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 196/488 (40%), Positives = 272/488 (55%), Gaps = 51/488 (10%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 40 MYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALQQGRKCFYTTPIKAL 99
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +G + VGLLTGD+++N EA +++MTTE+LRNMLY + L +
Sbjct: 100 SNQKYADLCRRYGTDKVGLLTGDNSVNSEAPVVVMTTEVLRNMLY------AGSQTLLGL 153
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G T++I
Sbjct: 154 GHVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTQVI 213
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGSRRRN 392
S RPVPL + + L +E H + ++ + +++ E +P Y+D RR
Sbjct: 214 VSEHRPVPLFQHVLAGRRMYDLFEEAEGH-KKAVNPDLTRMARLEASRPSYQD--RRRGR 270
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+ K AD + + + P+VI+ L S +LPAI FIF+R
Sbjct: 271 AMKEADRER------------ERRQRSRVWTPSRPEVIE---RLDSEGLLPAITFIFSRA 315
Query: 453 GCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAV----REPA--------IK 496
GC+AAVQ +C + + L A +R R L + RE ++
Sbjct: 316 GCEAAVQ---------QCLYAGLRLNDEGARERVRALVEERTSSIPREDLHVLGYYEWLE 366
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 367 GLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNG 426
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
+T E Q+ GRAGRRGID GH V++ E L PL S F S
Sbjct: 427 EQHADITPGEFTQLTGRAGRRGIDVEGHAVVLWQRAMNPEHLAGLAGTRTYPLRSSFKPS 486
Query: 617 YGMVLNLL 624
Y M +NL+
Sbjct: 487 YNMAVNLV 494
Score = 47.0 bits (110), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 21/221 (9%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 1015
E+ RL + +L +RIE + + F RI ++ E LD + + G+ A +
Sbjct: 725 ERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEHGKRLARLY 781
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSE--------GIKVRLWKNNSSIYEPST 1067
GE +L + LR + L PA+LAA ++LV E KV + +++ E
Sbjct: 782 GELDLLASECLREGVWEGLSPAELAACVSALVFESRAADDATAPKVPSGRAKAALGE--- 838
Query: 1068 TVINVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD 1126
+ + LD F + E G P D F+ WASG E++ + +
Sbjct: 839 -TVRIWGRLDALEEDFRISQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREVEMPA 894
Query: 1127 GDLARLLRRTIDLLAQI-PKLPDVDQRLQKNAVDASNVMDR 1166
GD R ++ ID+L QI P + KNA A + + R
Sbjct: 895 GDFVRWCKQVIDVLGQISAAAPGAGSTVPKNARKAVDELLR 935
>gi|21220127|ref|NP_625906.1| helicase [Streptomyces coelicolor A3(2)]
gi|6119673|emb|CAB59484.1| putative helicase [Streptomyces coelicolor A3(2)]
Length = 950
Score = 325 bits (834), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 196/488 (40%), Positives = 272/488 (55%), Gaps = 51/488 (10%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 46 MYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALQQGRKCFYTTPIKAL 105
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +G + VGLLTGD+++N EA +++MTTE+LRNMLY + L +
Sbjct: 106 SNQKYADLCRRYGTDKVGLLTGDNSVNSEAPVVVMTTEVLRNMLY------AGSQTLLGL 159
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G T++I
Sbjct: 160 GHVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTQVI 219
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGSRRRN 392
S RPVPL + + L +E H + ++ + +++ E +P Y+D RR
Sbjct: 220 VSEHRPVPLFQHVLAGRRMYDLFEEAEGH-KKAVNPDLTRMARLEASRPSYQD--RRRGR 276
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+ K AD + + + P+VI+ L S +LPAI FIF+R
Sbjct: 277 AMKEADRER------------ERRQRSRVWTPSRPEVIE---RLDSEGLLPAITFIFSRA 321
Query: 453 GCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAV----REPA--------IK 496
GC+AAVQ +C + + L A +R R L + RE ++
Sbjct: 322 GCEAAVQ---------QCLYAGLRLNDEGARERVRALVEERTSSIPREDLHVLGYYEWLE 372
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 373 GLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNG 432
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
+T E Q+ GRAGRRGID GH V++ E L PL S F S
Sbjct: 433 EQHADITPGEFTQLTGRAGRRGIDVEGHAVVLWQRAMNPEHLAGLAGTRTYPLRSSFKPS 492
Query: 617 YGMVLNLL 624
Y M +NL+
Sbjct: 493 YNMAVNLV 500
Score = 46.6 bits (109), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 21/221 (9%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 1015
E+ RL + +L +RIE + + F RI ++ E LD + + G+ A +
Sbjct: 731 ERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEHGKRLARLY 787
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSE--------GIKVRLWKNNSSIYEPST 1067
GE +L + LR + L PA+LAA ++LV E KV + +++ E
Sbjct: 788 GELDLLASECLREGVWEGLSPAELAACVSALVFESRAADDATAPKVPSGRAKAALGE--- 844
Query: 1068 TVINVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD 1126
+ + LD F + E G P D F+ WASG E++ + +
Sbjct: 845 -TVRIWGRLDALEEDFRISQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREVEMPA 900
Query: 1127 GDLARLLRRTIDLLAQI-PKLPDVDQRLQKNAVDASNVMDR 1166
GD R ++ ID+L QI P + KNA A + + R
Sbjct: 901 GDFVRWCKQVIDVLGQISAAAPGAGSTVPKNARKAVDELLR 941
>gi|417746444|ref|ZP_12394945.1| superfamily II RNA helicase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|336462033|gb|EGO40881.1| superfamily II RNA helicase [Mycobacterium avium subsp.
paratuberculosis S397]
Length = 823
Score = 325 bits (834), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 217/639 (33%), Positives = 308/639 (48%), Gaps = 98/639 (15%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
E++++ +S F +D FQR + A RG V+V APT +GKT++ E A +A
Sbjct: 14 TELVELTRFSSELPFALDGFQRRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGG 73
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ FYTTPLKALSNQK + +G + +GLLTGD ++N +A +++MTTE+LRNMLY
Sbjct: 74 KCFYTTPLKALSNQKHTDLTARYGRDRIGLLTGDMSVNADAPVVVMTTEVLRNMLY---- 129
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LSATV+NA+E GW
Sbjct: 130 --ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGW 187
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 383
I + G T ++ RPVPL + L L D + P
Sbjct: 188 IQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRNAE-----------------APG 230
Query: 384 KDGGSR--RRNS--------RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTL 433
+ G R R N R+ AD S+ R + P D +
Sbjct: 231 QPGAGREPRVNPDLLRHIAHRREADRLSDWQPRRGAGRGRPPARAGRPRFYRTPGRPDVI 290
Query: 434 WHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP 493
L + +LPAI F+F+R GCDAAVQ +C S ++L + R+ + +
Sbjct: 291 ATLDAEGLLPAITFVFSRAGCDAAVQ---------QCLRSPLQLTTQEERVQIAEVIEHR 341
Query: 494 A----------------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAA 537
+GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA
Sbjct: 342 CGDLADADLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLAL 401
Query: 538 GINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEE 597
GINMPART VL L K + LT E Q+ GRAGRRGID GH V++ P E E
Sbjct: 402 GINMPARTVVLERLVKFNGEQHVALTPGEYTQLTGRAGRRGIDVEGHAVVLWNPTEETTE 461
Query: 598 CCKLLFAGVE-----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEAR 652
+ AG+ PL S F SY M +NL+ Q G E+A
Sbjct: 462 PSAV--AGLASTRTFPLRSSFAPSYNMTINLVQ-----------------QMG--PEQAH 500
Query: 653 KLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMAN 712
+L+EQSF Y ++ + + Q D + +E+ +A E A
Sbjct: 501 RLLEQSFAQYQADRSVVGLVRGIERGQAMLDEIAAELGG-----------PKAPILEYAR 549
Query: 713 LQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHL 751
++ + +R ++ R L R A D L G +
Sbjct: 550 MRARISEMERAQSRASR---LHRRQAASDALAALRRGDI 585
>gi|296139877|ref|YP_003647120.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
gi|296028011|gb|ADG78781.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
DSM 20162]
Length = 917
Score = 325 bits (834), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 223/617 (36%), Positives = 312/617 (50%), Gaps = 77/617 (12%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A DF +D FQR A G V+V APT +GKT++ E A +A + FYTTP+
Sbjct: 9 FAERLDFTLDPFQRDGCAALENGHGVLVCAPTGAGKTVVGEFAVHLALAGGTKCFYTTPI 68
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK E +G + VGLLTGD++IN A +++MTTE+LRNMLY + L
Sbjct: 69 KALSNQKHAELVARYGADKVGLLTGDTSINSHAPVVVMTTEVLRNMLY------ADSPTL 122
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ +V+DEVHYL+D RG VWEE+I++ P +V+++ LSATV+NA+E WI ++ G T
Sbjct: 123 DGLSHVVMDEVHYLADRFRGAVWEEVILHLPADVRLVSLSATVSNAEEFGAWITEVRGDT 182
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLS-LNYLQLSTSEVKPYKDGGSRR 390
+I +RPVPL + L L D + +++ N L L + V+ K
Sbjct: 183 TVIVDEKRPVPLWQHMLVGRRLFDLFDTRALRASQESGGKNALVLDAALVRYVK------ 236
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS-QVPQVIDTLWHLRSRDMLPAIWFIF 449
R+ D + + + S + + A RR P+VI L + +LPAI F+F
Sbjct: 237 --QRESLDRSRDPGIVSPTGRRAGRGRPQATRRPIPRPEVIALL---DAEGLLPAITFVF 291
Query: 450 NRRGCDAAV--------------QYLEDCNLLDE--CEMSEVELALKRFRILYPDAVREP 493
+R GC+ A+ Q E ++D+ E S +L L F E
Sbjct: 292 SRAGCEQALTQCLRSPVVLTTQDQAAEIGAIIDKHVAEFSPADLELLGF---------EE 342
Query: 494 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
L +G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 343 WRAALTRGFAAHHAGMLPAFRHAVEELFVKGLVRAVFATETLALGINMPARTVVLERLVK 402
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
+LT E Q+ GRAGRRGID GH VVL QT +E L A PLVS
Sbjct: 403 FNGETHNELTPGEYTQLTGRAGRRGIDVEGHAVVLWQTGVR-PQEVAGLAGARTFPLVSS 461
Query: 613 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 672
FT Y M +NL+ + GR+ A +L+E SF + ++
Sbjct: 462 FTPGYNMSINLVD-----------------RLGRA--GAERLLEASFAQFQADRSVVGLA 502
Query: 673 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 732
+ + +KE D L ++I+D A A Y E L+E +++ +R LRR+
Sbjct: 503 KRVQRGEKELDQLRAQITDAA---------GGADYLEYVRLREAVRSRER---SLRRQHL 550
Query: 733 LKRFSALKDILKDFENG 749
R L + G
Sbjct: 551 SDRRDGAATALGELRRG 567
>gi|364506256|pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 325 bits (833), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 210/624 (33%), Positives = 337/624 (54%), Gaps = 69/624 (11%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V L ++++ F +E+I A + F +D FQ+ ++ +G SV V+A TS+GK
Sbjct: 11 EWAHVVDLNHKIENF-DELIP--NPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 67
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A N + YT+P+KALSNQKFR+F+ETF D N+GL+TGD IN +A L
Sbjct: 68 TVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCL 127
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V+
Sbjct: 128 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-- 364
I LSATV N E A WIG+ K +I++ +RPVPL K L+P++++ + +
Sbjct: 182 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEA 241
Query: 365 NRKLSLNYLQLSTSEVKPYK--------------------DG-GSRRRNSRKHADMNSNN 403
N + L +++ P K DG G R ++R A+ +
Sbjct: 242 NFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSR 301
Query: 404 IVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED 463
+ G ++ + + + P++++ +LR R++LP + F+F+++ C+ +LE
Sbjct: 302 GAGAIGSNKRKFFTQDGPSKKTWPEIVN---YLRKRELLPMVVFVFSKKRCEEYADWLEG 358
Query: 464 CNLLDECEMSEVEL----ALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIE 518
N + E S++ + ++ R + D + + LL +G+A HH G LPI K IE
Sbjct: 359 INFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIE 418
Query: 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578
LF +G +KV+FATET A G+N+P RT + SS+ K +G +LT E QMAGRAGRRG
Sbjct: 419 ILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRG 478
Query: 579 IDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNLLAGAKVMHLSNESD 637
+D+ G V+++ + K + GV L SQF +Y M+LNLL
Sbjct: 479 LDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLR------------ 526
Query: 638 DMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL---TSEISDDAI 694
++AL+ ++++ SF + + ++ +Q+E + + EI D+ I
Sbjct: 527 -IEALR-------VEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYKSCEICDNDI 578
Query: 695 DRKSRRLLSEAAYKE-MANLQEEL 717
++ +L AYKE NL +E+
Sbjct: 579 EKFLELML---AYKEATVNLMQEM 599
>gi|379736063|ref|YP_005329569.1| putative helicase helY [Blastococcus saxobsidens DD2]
gi|378783870|emb|CCG03538.1| putative helicase helY [Blastococcus saxobsidens DD2]
Length = 944
Score = 325 bits (833), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 210/594 (35%), Positives = 302/594 (50%), Gaps = 71/594 (11%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ ++ EA GS V+V APT +GKT++ E A +A R+ FYTTP+KALSNQ
Sbjct: 29 FALDPFQVAACEALEDGSGVLVCAPTGAGKTVVGEFAVHKALAEGRKAFYTTPIKALSNQ 88
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + + +G + VGLLTGD+A+N +A +++MTTE+LRNMLY + L + +
Sbjct: 89 KYNDLVQRYGADRVGLLTGDNAVNGDAPVVVMTTEVLRNMLY------AESPALRGLGYV 142
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVHYL+D RG VWEE+II+ P V +I LSATV+NA+E A W+ + G T ++ S
Sbjct: 143 VMDEVHYLADRFRGAVWEEVIIHLPPSVTLISLSATVSNAEEFADWLVTVRGDTSVVVSE 202
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RP+PL + + L + + + LST E + A
Sbjct: 203 VRPIPLWQHMLVGNRVFDLFSLRPAAHAAEQGDSPRPLSTRE---------------RGA 247
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRS--------QVPQVIDTLWHLRSRDMLPAIWFIF 449
+ +V +H+ +S RR + P D + L +LPAI F+F
Sbjct: 248 SVVDPELVRYVREHERRIDSWGGDRRRDSGHRPRYRPPARSDVVERLDRAGLLPAITFVF 307
Query: 450 NRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPD---------AVREPAIKGL 498
+R GCDAAV L L DE E +E+ + P+ RE GL
Sbjct: 308 SRNGCDAAVHQCLLSGLRLTDEVERAEIAAIIDERTGSLPEEDLHVLGFWEWRE----GL 363
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
L G+AAHHAG +P +K +EE F RGLVK VFATETLA GINMPART VL L K
Sbjct: 364 LAGLAAHHAGLVPAFKETVEECFVRGLVKAVFATETLALGINMPARTVVLERLVKWNGEA 423
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+ +T E Q+ GRAGRRGID GH V++ P L PL S F SY
Sbjct: 424 HVDVTPGEYTQLTGRAGRRGIDVEGHAVVIWAPGMDPSVVAGLASTRTYPLKSSFRPSYN 483
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKI 678
M +NL++ GR+ AR+L+ SF + ++ +
Sbjct: 484 MAVNLVS-----------------SFGRA--RARELLASSFAQFQADRSVVGLARAAARH 524
Query: 679 QKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 732
+++ +E+ D D + L +++A+ ++EL + ++ +RRME
Sbjct: 525 ERDAAQSAAEMRSDRGDVGAYAQLR----RQIADREKELSRD----SQAKRRME 570
Score = 41.2 bits (95), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 1067
G A I E++L +A LR + L P +LAAV ++LV E + P+
Sbjct: 778 GRRLARIWSESDLLVAECLRAGVWRGLTPPELAAVVSTLVFEARR----DTPGLPAVPAG 833
Query: 1068 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASG 1112
TV I + R+ L+++ HGV LD F+ WA G
Sbjct: 834 TVAAAIGEMRGIRARLLDVELDHGVPPSRDLDLGFAWAAYRWADG 878
>gi|379761703|ref|YP_005348100.1| ATP-dependent DNA helicase HelY [Mycobacterium intracellulare
MOTT-64]
gi|406030489|ref|YP_006729380.1| helicase helY [Mycobacterium indicus pranii MTCC 9506]
gi|378809645|gb|AFC53779.1| ATP-dependent DNA helicase HelY [Mycobacterium intracellulare
MOTT-64]
gi|405129036|gb|AFS14291.1| putative helicase helY [Mycobacterium indicus pranii MTCC 9506]
Length = 926
Score = 325 bits (833), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 221/631 (35%), Positives = 318/631 (50%), Gaps = 84/631 (13%)
Query: 145 EMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRR 204
E++++ A F +D FQ + A RG V+V APT +GKT++ E A +A +
Sbjct: 3 ELVELTRFAMDLPFSLDGFQHRACVALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGGK 62
Query: 205 IFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGM 264
FYTTPLKALSNQK + +G + +GLLTGD ++N +A +++MTTE+LRNMLY
Sbjct: 63 CFYTTPLKALSNQKHTDLTARYGRDRIGLLTGDMSVNADAPVVVMTTEVLRNMLY----- 117
Query: 265 VSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
+ L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LSATV+NA+E GWI
Sbjct: 118 -ADSPALRGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGWI 176
Query: 325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD--------EKGKHMNRKLSLNYLQLS 376
+ G T ++ RPVPL + L L D + G +++ + L+
Sbjct: 177 QTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRHSDAPEQPGAPREPRVNPDLLRHI 236
Query: 377 TSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL 436
T RR + + +D S G+ + S R + P D + L
Sbjct: 237 TH-----------RREADRMSDWQPRR---SAGRGRPPARS-GRPRLYRTPARPDVIASL 281
Query: 437 RSRDMLPAIWFIFNRRGCDAAVQY-----LEDCNLLDECEMSEV------ELALKRFRIL 485
+ +LPAI F+F+R GCDAAVQ L+ + +++EV +LA +L
Sbjct: 282 DAEGLLPAITFVFSRAGCDAAVQQCLRSPLQLTTQEERAQIAEVIEHRCGDLADADLAVL 341
Query: 486 YPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
RE GLL+G+AAHHAG LP ++ +EELF GLV+ VFATETLA GINMPART
Sbjct: 342 GYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVRAVFATETLALGINMPART 397
Query: 546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 605
VL L K + LT E Q+ GRAGRRGID GH V++ P E E + AG
Sbjct: 398 VVLERLVKFNGEQHVALTPGEYTQLTGRAGRRGIDVEGHAVVLWNPTEETTEPSAV--AG 455
Query: 606 VE-----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 660
+ PL S F SY M +NL+ Q G E+A +L+EQSF
Sbjct: 456 LASTRTFPLRSSFAPSYNMTINLVQ-----------------QMG--PEQAHRLLEQSFA 496
Query: 661 NYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAE 720
Y ++ L + + D + EI+ + K A E A ++ +
Sbjct: 497 QYQADRSVVG----LVRGIERGDAMLGEIAGELGGPK-------APILEYARMRARISEM 545
Query: 721 KRFRTELRRRMELKRFSALKDILKDFENGHL 751
+R ++ R L+R A D L G +
Sbjct: 546 ERAQSRASR---LQRRQAASDALAALRRGDI 573
>gi|296129718|ref|YP_003636968.1| DSH domain-containing protein [Cellulomonas flavigena DSM 20109]
gi|296021533|gb|ADG74769.1| DSH domain protein [Cellulomonas flavigena DSM 20109]
Length = 952
Score = 325 bits (832), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 200/521 (38%), Positives = 284/521 (54%), Gaps = 63/521 (12%)
Query: 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216
DF +D FQ + A RGS V+V+APT +GKT++ E A + + R+ FYTTP+KALSN
Sbjct: 52 DFPLDDFQVEACAALERGSGVLVAAPTGAGKTVVGEFAVHLALVSGRKAFYTTPIKALSN 111
Query: 217 QKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276
QK+ + G VGLLTGD+++N +A +++MTTE+LRNMLY + S L +
Sbjct: 112 QKYADLARVHGTERVGLLTGDTSVNGDADVVVMTTEVLRNMLY------AGSSALDGLGY 165
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
+V+DEVHYL+D RG VWEE+II+ P +VQ++ LSATV+NA+E W+ + G T ++ S
Sbjct: 166 VVMDEVHYLADRFRGPVWEEVIIHLPDDVQLVSLSATVSNAEEFGDWLATVRGDTTVVVS 225
Query: 337 SRRPVPLTWYFSTKTALLPL----LDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
RPVPL + LL L +D ++ ++ + L + GG R
Sbjct: 226 EHRPVPLGQHVLVGDQLLDLYAGHVDPTDPGVDPPINPDLTHLLRG-----RTGGDR--- 277
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
D + + + + R ++D L R +LPAI FIF+R
Sbjct: 278 -----DRRAPRGRPGRARDHRPAGGVRPVPRF---VMVDELAEAR---LLPAIVFIFSRV 326
Query: 453 GCDAAVQYL--EDCNLLDECEMSEV-ELALKRFRILYPDAVR----EPAIKGLLKGVAAH 505
GC+AAVQ L E +++ +A +R + P+ + + ++GL++GVAAH
Sbjct: 327 GCEAAVQQCLSAGVRLTTPAERADIRRVAEERCAAIPPEDLEVLGYDAFVEGLVRGVAAH 386
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP++K +E+LF RG VKVVFATETLA GINMPAR VL L K S + +T
Sbjct: 387 HAGMLPLFKETVEDLFSRGWVKVVFATETLALGINMPARCVVLEKLVKWDGSAHVDVTPG 446
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
E Q+ GRAGRRGID GH V+V P + A + L+ PL S F +Y M +
Sbjct: 447 EYTQLTGRAGRRGIDTEGHAVVVAHGALDPVQLAGLASRRLY----PLRSSFRPTYNMAV 502
Query: 622 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
NL+A Q GR E AR ++E SF +
Sbjct: 503 NLVA-----------------QVGR--ERARDVLETSFAQF 524
>gi|401840058|gb|EJT42980.1| SKI2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 855
Score = 325 bits (832), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 197/536 (36%), Positives = 295/536 (55%), Gaps = 60/536 (11%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V L ++++ F +++I A + F +D FQ+ ++ +G SV V+A TS+GK
Sbjct: 301 EWAHVVDLNHKIENF-DQLIP--NPARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 357
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A N + YT+P+KALSNQKFR+F+ETF D ++GL+TGD IN +A L
Sbjct: 358 TVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVDIGLITGDVQINPDANCL 417
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V+
Sbjct: 418 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 471
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366
I LSATV N E A WIG+ K +I++ +RPVPL TK L+P++++ + ++
Sbjct: 472 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWTKKELIPVINQNSEFLDA 531
Query: 367 KLSLNYLQL---STSEVKPYKDGG-----------------------------SRRRNSR 394
+ L ST + D G + R SR
Sbjct: 532 NFRKHKEILNGDSTKGIPSKSDTGKGGSTARGGRGGGNTRGGRGGRGNSTRGNANRGGSR 591
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
M SN F Q SK + P++++ +LR R++LP + F+F+++ C
Sbjct: 592 GAGAMGSNK-RKFFTQDGPSKKTW--------PEIVN---YLRKRELLPMVVFVFSKKRC 639
Query: 455 DAAVQYLEDCNLLDECEMSE----VELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGC 509
+ +LE N + E S+ +E ++ R + D + + LL +G+A HH G
Sbjct: 640 EEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGL 699
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LPI K IE LF +G +KV+FATET A G+N+P RT + SS+ K +G +LT E Q
Sbjct: 700 LPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQ 759
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNLL 624
MAGRAGRRG+D+ G V+++ + K + GV L SQFT +Y M+LNLL
Sbjct: 760 MAGRAGRRGLDSTGTVIVMAYNSPLSLATFKEVTMGVPTRLQSQFTLTYNMILNLL 815
>gi|284991142|ref|YP_003409696.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
obscurus DSM 43160]
gi|284064387|gb|ADB75325.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
DSM 43160]
Length = 951
Score = 325 bits (832), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 202/496 (40%), Positives = 271/496 (54%), Gaps = 58/496 (11%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + EA GS V+V APT +GKT++ E A +A R+ FYTTP+KALSNQ
Sbjct: 29 FSLDPFQVQACEALDEGSGVLVCAPTGAGKTVVGEFAVHKALAEGRKAFYTTPIKALSNQ 88
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD-VDV 276
K+ + E +G+ VGLLTGD+AIN +A +++MTTE+LRNMLY +ES D +
Sbjct: 89 KYNDLAERYGEGKVGLLTGDNAINGDAPVVVMTTEVLRNMLY-------AESPAIDGLGY 141
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
+V+DEVHYL+D RG VWEE+II+ P+ V ++ LSATV+NA+E A W+ + G TE++ S
Sbjct: 142 VVMDEVHYLADRFRGAVWEEVIIHLPQSVTLVSLSATVSNAEEFADWLVTVRGHTEVVVS 201
Query: 337 SRRPVPLTWYFSTKTALLPLLDEKGKHM---NRKLSLNYLQLSTSEVKPYKDGGSRRRNS 393
RP+PL W +HM NR L L+ + + D R +++
Sbjct: 202 EVRPIPL-W----------------QHMLVGNRVFDLFSLRPAAHAAEQGDD--PRGQST 242
Query: 394 R-KHADMNSNNIVTSFGQHQLSKNSINAIR------------RSQVPQVIDTLWHLRSRD 440
R + A + +V +H+ ++ R + P D + L
Sbjct: 243 RERGASVVDPELVRYVREHERRMDTWGGGNGGSRRERDWHKPRYKPPARADVIERLDRSG 302
Query: 441 MLPAIWFIFNRRGCDAAV-QYLE-DCNLLDECEMSEVELALKRFRILYPD---------A 489
+LPAI F+F+R GCDAAV Q L L DE E SE+ + P+
Sbjct: 303 LLPAITFVFSRNGCDAAVDQCLRAGLRLTDEHERSEIAAIIDERTGSLPEEDLHVLGFWE 362
Query: 490 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
RE GLL G+AAHHAG +P +K +EE F RGLVK VFATETLA GINMPART VL
Sbjct: 363 WRE----GLLAGLAAHHAGLVPAFKETVEECFVRGLVKAVFATETLALGINMPARTVVLE 418
Query: 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
L K + +T E Q+ GRAGRRGID GH V+V P L PL
Sbjct: 419 RLVKWNGEAHVDVTPGEYTQLTGRAGRRGIDVEGHAVVVWAPGMDPSVVAGLASTRTYPL 478
Query: 610 VSQFTASYGMVLNLLA 625
S F SY M +NL++
Sbjct: 479 KSSFRPSYNMAVNLVS 494
>gi|297195384|ref|ZP_06912782.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
25486]
gi|197719246|gb|EDY63154.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
25486]
Length = 942
Score = 325 bits (832), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 196/479 (40%), Positives = 266/479 (55%), Gaps = 26/479 (5%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
++YDF +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KA
Sbjct: 30 AMYDFELDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALEQGRKCFYTTPIKA 89
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD 273
LSNQK+ + + +G VGLLTGD+++N A +++MTTE+LRNMLY + L
Sbjct: 90 LSNQKYSDLVKRYGAEKVGLLTGDNSVNSGAPVVVMTTEVLRNMLY------AGSQSLMG 143
Query: 274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 333
+ +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+
Sbjct: 144 LGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEV 203
Query: 334 ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 393
I S RPVPL + + L +E+ H R ++ EV P +R NS
Sbjct: 204 IVSEHRPVPLWQHVLAGRRMYDLFEEETDHGGRGVA-------RREVNPDLVRLARMENS 256
Query: 394 RKH--ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
R + D +V + + + I +VID L + +LPAI FIF+R
Sbjct: 257 RTYNPRDRRRGKMVREA-DRERERRQRSRIWTPARSEVID---RLDAEGLLPAITFIFSR 312
Query: 452 RGCDAAVQ--YLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPA----IKGLLKGVAA 504
GC+AAVQ L DE EV E+ R + + + ++GL +G+AA
Sbjct: 313 AGCEAAVQQCLYAGLRLNDEDARREVREIVEDRTASIPGEDLHVLGYYEWLEGLERGIAA 372
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T
Sbjct: 373 HHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITP 432
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E Q+ GRAGRRGID GH V++ E L PL S F SY M +NL
Sbjct: 433 GEYTQLTGRAGRRGIDVEGHAVVLWQRAMDPEALAGLAGTRTYPLRSSFKPSYNMAVNL 491
Score = 47.8 bits (112), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 19/220 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL+ +++L +RIE + + F RI ++ E L + + G+ A + G
Sbjct: 723 ERYFRLQRDTRQLERRIEGRTNTIARTFDRIVALLTEMDYLRGDE--VTEDGKRLARLYG 780
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSE--------GIKVRLWKNNSSIYEPSTT 1068
E +L + LR + L PA+LAA ++LV E KV K ++ E
Sbjct: 781 ELDLLASECLREGVWEGLNPAELAACVSALVYEARQSDDAVAPKVPAGKAKVALAE---- 836
Query: 1069 VINVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 1127
++ + LD F + E G P D F+ WAS E++ + + G
Sbjct: 837 MVRIWGRLDALEEEFRINQAEGVGQREP---DLGFAWAAHQWASDKGLDEVLGEVGMPAG 893
Query: 1128 DLARLLRRTIDLLAQI-PKLPDVDQRLQKNAVDASNVMDR 1166
D R ++ ID+L QI P + + KNA A + + R
Sbjct: 894 DFVRWCKQVIDVLGQIAAAAPRENSTVSKNARKAVDALLR 933
>gi|422012695|ref|ZP_16359353.1| DEAD/DEAH box helicase, partial [Actinomyces georgiae F0490]
gi|394753944|gb|EJF37416.1| DEAD/DEAH box helicase, partial [Actinomyces georgiae F0490]
Length = 575
Score = 325 bits (832), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 203/545 (37%), Positives = 289/545 (53%), Gaps = 71/545 (13%)
Query: 158 FRIDKFQRSSIEAFLRGSS-VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216
F D FQ +++A G+S V+V+APT +GKT++ + A R +YTTP+KALSN
Sbjct: 55 FTPDAFQVEALDAVEAGASAVLVAAPTGAGKTVVGDFGAHMARRGSMRAYYTTPIKALSN 114
Query: 217 QKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276
QK+ E + FG + VGL TGD++IN A I++MTTE+LRNM+Y + +GL D+ V
Sbjct: 115 QKYLELSDMFGADQVGLATGDTSINPGAPIVVMTTEVLRNMIY-------AGAGLSDLAV 167
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
+VLDEVHYLSD RG VWEE+II+ P+ VQII LSATV+NA+E W+G++ G ++ S
Sbjct: 168 VVLDEVHYLSDRMRGPVWEEVIIHLPRHVQIIALSATVSNAEEFGAWMGEVRGGCAVVVS 227
Query: 337 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 396
RPVPL + ++ L G +N +L +QL+ R R
Sbjct: 228 EERPVPLYQHMVVGDEIIDLYTPSGA-LNPRL----VQLTA----------PRSRRPVGA 272
Query: 397 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
A G+ + S+ S TL L +LPAI F+F+R GC+
Sbjct: 273 AGRRGAGGGPRGGRRRESRPS--------------TLVALDRAGLLPAITFVFSRAGCED 318
Query: 457 AVQYL--EDCNLLDECEMSEVE---------LALKRFRILYPDAVREPAIKGLLKGVAAH 505
AV+ + L + +A + +++L DA R+ L++GVAAH
Sbjct: 319 AVRQVVASGITLTSRATARRISEYVDGVVRAIAPEDYQVLGVDAWRD----ALVRGVAAH 374
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP+ K +E LF +GL+ +V+ATETLA GINMPART V+ SL K S R L++
Sbjct: 375 HAGMLPLMKEAVEHLFSQGLISMVYATETLALGINMPARTVVIESLQKWNGSSRAPLSAG 434
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E Q++GRAGRRGID GH V+ EE L PLVS F +Y MV+NLL
Sbjct: 435 EYTQLSGRAGRRGIDTEGHAVVSHRGGAAPEEVAALASKRAYPLVSAFRPTYNMVVNLLE 494
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 685
+ V E+AR+L+E SF + +++ L + L
Sbjct: 495 HSTV-------------------EQARELLESSFAQFQADRAVVSLASRLRDARARAGAL 535
Query: 686 TSEIS 690
+++
Sbjct: 536 RGDLA 540
>gi|254385035|ref|ZP_05000369.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
gi|194343914|gb|EDX24880.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
Length = 717
Score = 325 bits (832), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 198/485 (40%), Positives = 271/485 (55%), Gaps = 38/485 (7%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+Y+F +D +Q + +A G V+V+APT SGKT++ E A +A R+ FYTTP+KAL
Sbjct: 43 MYEFDLDPYQVEACKALEAGKGVLVAAPTGSGKTIVGEFAVHLALAQGRKCFYTTPIKAL 102
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQKF + + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 103 SNQKFADLVKRYGADKVGLLTGDNSVNGDAPVVVMTTEVLRNMLY------AGSQALRGL 156
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G T++I
Sbjct: 157 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTDVI 216
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
S RPVPL + + L +E+ H R + EV P +R NSR
Sbjct: 217 VSEERPVPLWQHVMAGRRVYDLFEEESDHGGRG-------SARREVNPDLLRMAREENSR 269
Query: 395 KH--ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+ D +V + + S + I P+VI L + D+LPAI FIF+R
Sbjct: 270 TYNPKDRRRGKMVRE-ADRERERRSRSRIWTPSRPEVIA---RLDNDDLLPAINFIFSRA 325
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----------IKGLLKG 501
GC+AAVQ C L ++ E LK I+ P ++GL +G
Sbjct: 326 GCEAAVQ---QC-LYAGLRLNNEEARLKVRGIVEERTASIPTEDLHVLGYYEWLEGLERG 381
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPART +L L K
Sbjct: 382 IAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARTVILEKLVKWNGEQHAD 441
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE--PLVSQFTASYGM 619
+T E Q+ GRAGRRGID GH V++ G + AG PL S F SY M
Sbjct: 442 ITPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGMDPVGLAGLAGTRTYPLRSSFKPSYNM 499
Query: 620 VLNLL 624
+NL+
Sbjct: 500 AVNLV 504
>gi|256391637|ref|YP_003113201.1| DEAD/DEAH box helicase [Catenulispora acidiphila DSM 44928]
gi|256357863|gb|ACU71360.1| DEAD/DEAH box helicase domain protein [Catenulispora acidiphila DSM
44928]
Length = 951
Score = 325 bits (832), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 208/540 (38%), Positives = 281/540 (52%), Gaps = 38/540 (7%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
YDF +D FQ A G SV+V+APT SGKT++ E A +A + FYTTP+KALS
Sbjct: 26 YDFDLDGFQIEGCRALEAGDSVLVAAPTGSGKTVVGEFAVHLALAQGVKCFYTTPIKALS 85
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+ + G NVGLLTGD+ +N EA I++MTTE+LRNMLY G +S +
Sbjct: 86 NQKYSDLVARHGAANVGLLTGDNTVNGEAPIVVMTTEVLRNMLYAGSGTLSG------LG 139
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELIT 335
+V+DEVHYL+D RG VWEE+II+ P+ V+++ LSATV+N +E AGW+ + G T+ I
Sbjct: 140 YVVMDEVHYLADRFRGAVWEEVIIHLPESVRLVALSATVSNVEEFAGWLRTVRGDTKSIV 199
Query: 336 SSRRPVPLTWYFSTKTALLPLL--DEKGKHMNRKLSLNYLQLSTS-EVKPYKDGGSRRRN 392
RPVPL + + + L G+ M + + V P +R +
Sbjct: 200 WEHRPVPLWQHVLSGRRMFDLFANGADGEAMPGANGQGGISAARELRVNPELVRLNRESS 259
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+ G R VP +D + L + +LPAI FIF+R
Sbjct: 260 ESMYKRGGPRGGGGGGGNRGQRGRVQRRGRGGWVPSRVDVIEKLDTEGLLPAITFIFSRA 319
Query: 453 GCDAAVQYL--EDCNLLDECEMSEVEL-ALKRFRILYPDAVREPAIK----GLLKGVAAH 505
GCDAAVQ LL+ E + V+ L+R + + + GL +GVAAH
Sbjct: 320 GCDAAVQQFLHGGVRLLNADERARVKAHVLERTGRIPSEDLNVLGFHDWFDGLQRGVAAH 379
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP +K +EELF +GLVK VFATETLA GINMPART V+ +L+K + LT+
Sbjct: 380 HAGMLPTFKEIVEELFVQGLVKAVFATETLALGINMPARTVVMEALTKWNGENHVDLTAG 439
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E Q+ GRAGRRGID GH V++ A+ L PL S F SY M +NL+
Sbjct: 440 EYTQLTGRAGRRGIDIEGHAVVLWRADLDAKALAGLAGTRTYPLRSSFKPSYNMAVNLVG 499
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 685
Q G E AR L+E SF Y ++ + ++K TD L
Sbjct: 500 -----------------QFG--AERARNLLETSFAQYQADQAVVGLTRQ---VRKNTDAL 537
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 7/217 (3%)
Query: 927 TKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLR 986
T+++RL+K I R + D ++ E + +L +K+L KR+ S + F R
Sbjct: 702 TEISRLRKAI-RAHPCHGCQDREDHARWAE-RFHKLDRETKQLQKRVAGRTNSIARVFDR 759
Query: 987 ISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 1046
+ ++ + LD + + P+G+ + E +L A LR + L P +LAA ++L
Sbjct: 760 VCGLLEQLGYLDGDQ--VTPIGKRLGRLYTELDLLTAETLRAGLWEGLTPPELAACVSAL 817
Query: 1047 VSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMV 1106
V E R + P V ++ + + +L+ H +E D F+
Sbjct: 818 VYE---ARRADDAGPPRLPGGAVPKTLDEMVRLWAKLEDLETDHHLEFQREPDLGFALPA 874
Query: 1107 EAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 1143
WASG E++ D + GD R ++ IDLL Q+
Sbjct: 875 FHWASGKALEEVLWDVEMPAGDFVRWCKQLIDLLGQV 911
>gi|227503643|ref|ZP_03933692.1| helicase [Corynebacterium accolens ATCC 49725]
gi|227075679|gb|EEI13642.1| helicase [Corynebacterium accolens ATCC 49725]
Length = 938
Score = 325 bits (832), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 206/571 (36%), Positives = 292/571 (51%), Gaps = 66/571 (11%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D A+ + +D+FQ EA G V+V APT +GKT++ E A ++ + FYT
Sbjct: 6 LDTFAAGLPYPLDEFQVQGCEAVENGQGVLVCAPTGAGKTVVGEFAVSLALSRGTKCFYT 65
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + GD+ VGLLTGD +IN +A+I++MTTE+LRNM+Y +
Sbjct: 66 TPIKALSNQKYHDLVAEHGDDAVGLLTGDVSINADAEIVVMTTEVLRNMIY------ADS 119
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L + +V+DE+H+L+D SRG VWEE+I+ V II LSATV+N++E W+ +
Sbjct: 120 PALDRLTHVVMDEIHFLADASRGAVWEEVILNLADHVSIIGLSATVSNSEEFGEWLATVR 179
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV----KPY 383
G T +I + RPVPL + + PL + E G +N +L +L + Y
Sbjct: 180 GDTSVIVTEHRPVPLDQWMMLGRKIYPLFEPESGGQVNSELERRIQRLEAGDSDDGRADY 239
Query: 384 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 443
K G R +R H + G S + R P+V+ L +S+DMLP
Sbjct: 240 KSGKGFRARAR-HKGGGRSEFHGKAGGRSGSSRPQDRYRPLGRPEVLKVL---QSQDMLP 295
Query: 444 AIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE---------VE---------LALKRFRI 484
AI FIF+R GCD A+ Q L +L E +E VE L +R+R
Sbjct: 296 AITFIFSRAGCDGALYQCLRSRMVLTTQEEAEEIKAIVDAGVEGIPEEDLQVLDFRRWR- 354
Query: 485 LYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 544
+ L +G AAHHAG LP ++ +E+LF RGLV+ VFATETLA GINMPAR
Sbjct: 355 -----------EALSRGFAAHHAGMLPAFRHIVEDLFVRGLVRAVFATETLALGINMPAR 403
Query: 545 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 604
T VL L K + LT + Q+ GRAGRRGID G+ V+ P L
Sbjct: 404 TVVLEKLIKFNGEAHVDLTPGQYTQLTGRAGRRGIDTLGNAVVQWAPAMDPRFVAGLAST 463
Query: 605 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 664
PL+S F Y M +NLL MH E++ +L+E+SF +
Sbjct: 464 RTYPLISTFAPGYNMAINLLG----MH---------------GFEDSLRLLEKSFAQFQA 504
Query: 665 SNVMLAAKDELCKIQKETDVLTSEISDDAID 695
++ EL + + L ++ DDA+D
Sbjct: 505 DGSVVEETRELERAEHRVRELREQL-DDAVD 534
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 110/266 (41%), Gaps = 33/266 (12%)
Query: 909 LHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKR 968
L + H A E R ++A + +K+AR E ++ +K+ V + + R R
Sbjct: 691 LRDAIREHPAHEWPATDREQLAGVAQKLARRE--RDLEKLQAKVDKATDTLGRTFERIVD 748
Query: 969 LTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRN 1028
L ++ +E SG A T VI GE A I E++L +A L+
Sbjct: 749 LLAEMDYVEFSG---------------AGSDRTPVITEEGERLAKIHSESDLLVAQCLKR 793
Query: 1029 KILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL-- 1086
I +L PA+LA V + E K ++ +P + + ++ + EL
Sbjct: 794 GIWDELDPAELAGVASLCCFENRK-------ATGGQPEAATDRMADAMNATWRIYTELGA 846
Query: 1087 -QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-----DCALDDGDLARLLRRTIDLL 1140
+ +H + ++ F+ + WA+G M L GD R R+ +DLL
Sbjct: 847 DERRHRLPPTREPEAGFALAIHQWAAGAPLGYCMAAANEAGAELTPGDFVRWCRQVVDLL 906
Query: 1141 AQIPKLPDVDQRLQKNAVDASNVMDR 1166
QI K D ++Q+NA A + + R
Sbjct: 907 QQIAKT-GYDGQIQRNARRAMDAIQR 931
>gi|348173912|ref|ZP_08880806.1| putative ATP-dependent RNA helicase [Saccharopolyspora spinosa NRRL
18395]
Length = 925
Score = 325 bits (832), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 200/527 (37%), Positives = 278/527 (52%), Gaps = 67/527 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A F +D FQR++ +A G V+V APT +GKT++ E A + R+ FYTTP
Sbjct: 31 EFAGELSFELDPFQRTACQALEAGRGVLVCAPTGAGKTVVGEFAVHLALKEGRKCFYTTP 90
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+ + E G + VGLLTGD++IN EAQ+++MTTE+LRNMLY +
Sbjct: 91 IKALSNQKYADLCERHGSDAVGLLTGDTSINGEAQVVVMTTEVLRNMLY------AGSRS 144
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DEVHYL+D RG VWEE+I++ P+ VQ+ LSATV+NA+E W+ ++ G
Sbjct: 145 LDQLGYVVMDEVHYLADRFRGAVWEEVILHLPEYVQVASLSATVSNAEEFGEWLQEVRGD 204
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
T ++ RPVPL + + L G+ NR+L +N
Sbjct: 205 TTVVVDEHRPVPLWQHMLVGPRMFDLFG--GETQNRELQINP------------------ 244
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIR------RSQVPQVIDTLWHLRSRDMLPA 444
N +H + + G+ + + NA R R P ++ L L + +LPA
Sbjct: 245 -NLVRHTQQLARVHLPYGGR----RGAPNAKRKGPRPPRFYPPSRVEMLTGLDAAGLLPA 299
Query: 445 IWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG----- 497
I FIF+R GCD AV L + E+ E+ + P++ + A+ G
Sbjct: 300 IVFIFSRNGCDQAVSQCMRAGLRLTTDAEIDEIREVIDEHTANLPES--DLAVLGFWEWR 357
Query: 498 --LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
L +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPART VL L K
Sbjct: 358 EALERGLAAHHAGLLPAFKETVEELFVRGLVKAVFATETLALGINMPARTVVLERLVKFN 417
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 615
+ L+ E Q+ GRAGRRGID GH V+V P ++ L PL S F
Sbjct: 418 GESHVDLSPGEYTQLTGRAGRRGIDVEGHAVVVWQPGVDPKQVAGLASTRTYPLRSSFRP 477
Query: 616 SYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
Y M +NL V + ++ AR+L+EQSF +
Sbjct: 478 GYNMAVNL-----VQRVGQDA--------------ARELLEQSFAQF 505
Score = 44.3 bits (103), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 19/221 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI---NTQVIFPLGETAAA 1013
E+ +RL+ ++ L +++ S + F RI ++ E L + + + G +
Sbjct: 705 ERYERLRGENENLRRKVAATTHSLARSFDRIVALLTERDYLPVAGSSEGAVTQHGRRLSR 764
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
+ E++L A LR + L PA+LAAV +SLV E + L P V
Sbjct: 765 LYSESDLLAAECLRVEAWRGLGPAELAAVVSSLVYESRREGL--------APQVPAGAVS 816
Query: 1074 NVLDEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALD 1125
+ L + EL++ +H ++ D+ F+ V WA G + +++ L
Sbjct: 817 DALATTWRLWAELEDDERRHKLDRTREPDAGFAWPVFRWARGESLEKVLTAAESSGHELS 876
Query: 1126 DGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
GD R R+ IDLL QI ++ + +A A + R
Sbjct: 877 AGDFVRWCRQVIDLLDQIREVVGAADPVGSSAAKAVTAIRR 917
>gi|420862495|ref|ZP_15325891.1| putative helicase helY [Mycobacterium abscessus 4S-0303]
gi|420867079|ref|ZP_15330466.1| putative helicase helY [Mycobacterium abscessus 4S-0726-RA]
gi|420872828|ref|ZP_15336206.1| putative helicase helY [Mycobacterium abscessus 4S-0726-RB]
gi|421039459|ref|ZP_15502469.1| putative helicase helY [Mycobacterium abscessus 4S-0116-R]
gi|421043185|ref|ZP_15506186.1| putative helicase helY [Mycobacterium abscessus 4S-0116-S]
gi|392073470|gb|EIT99309.1| putative helicase helY [Mycobacterium abscessus 4S-0726-RB]
gi|392075410|gb|EIU01244.1| putative helicase helY [Mycobacterium abscessus 4S-0726-RA]
gi|392077656|gb|EIU03487.1| putative helicase helY [Mycobacterium abscessus 4S-0303]
gi|392225568|gb|EIV51085.1| putative helicase helY [Mycobacterium abscessus 4S-0116-R]
gi|392237037|gb|EIV62531.1| putative helicase helY [Mycobacterium abscessus 4S-0116-S]
Length = 922
Score = 324 bits (831), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 211/544 (38%), Positives = 287/544 (52%), Gaps = 50/544 (9%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + A G V+V APT +GKT++ E A +A R+ FYTTP+KALSNQ
Sbjct: 18 FALDPFQVRACTALENGHGVLVCAPTGAGKTIVGEFAVHLALAAGRKCFYTTPIKALSNQ 77
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K + +G VGLLTGDS+IN +A +++MTTE+LRNMLY + L + +
Sbjct: 78 KHNDLVSVYGPEKVGLLTGDSSINSDAPVVVMTTEVLRNMLY------ADSPALHGLSYV 131
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVH+L+D RG VWEE+I++ P++V + LSATV+NA+E GWI + G T ++
Sbjct: 132 VMDEVHFLADRFRGAVWEEVILHLPEDVALASLSATVSNAEEFGGWIQTVRGDTTVVVDE 191
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RPVPL + L L D + + R+ S + S+V P G +R R+ A
Sbjct: 192 TRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG--TGNPSQVDP---GLTRYIAQRRQA 245
Query: 398 DMNSN-NIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
D ++ + G Q + R P+VI L +LPAI FIF+R GCD
Sbjct: 246 DRFADFDRPRRRGPQQRTSRPPTLYRPPSRPEVIT---RLDEDGLLPAITFIFSRAGCDG 302
Query: 457 AV-QYLED-CNLLDECEMSEVELALKRFRILYPDAV---------REPAIKGLLKGVAAH 505
AV Q L L E E E+ + + R P+A RE GLL+G+AAH
Sbjct: 303 AVAQCLRSRLRLTTEEERREIIVIIDRRTEGLPEADLDVLGYWQWRE----GLLRGIAAH 358
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP+++ +EELF +GLVK VFATETLA GINMPART VL L K LT
Sbjct: 359 HAGMLPVFRHTVEELFTKGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHAALTPG 418
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E Q+ GRAGRRGID GH V++ TP E L PL S F SY M +NL
Sbjct: 419 EYTQLTGRAGRRGIDVEGHAVVLWTPEVEPTEIAGLASTRTFPLRSSFAPSYNMTINL-- 476
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 685
+H + AR+L+E+SF Y ++ + + +K D +
Sbjct: 477 ----VHRMGP-------------DPARELLERSFAQYQADRSVVGLVRGIERGRKMLDEI 519
Query: 686 TSEI 689
E+
Sbjct: 520 AGEL 523
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 18/208 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETAAA 1013
E+ R++ + +L K++ S + F RI ++ E ++ + ++ + G A
Sbjct: 701 ERYLRIERDNAQLQKKVAAATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLLAR 760
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
I E++L +A LR + LKPA+LAAV ++++ E S+ E T +
Sbjct: 761 IYSESDLLVAECLRRGLWAGLKPAELAAVASAVLYES----RGDTVSATGEAPTAALR-- 814
Query: 1074 NVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCALD 1125
L E + L +++H + +D F V WA+ + AL
Sbjct: 815 GALAETHRALARLRRDEQQHHLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTALP 874
Query: 1126 DGDLARLLRRTIDLLAQIPK-LPDVDQR 1152
GD R R+ +DLL QI K PD + R
Sbjct: 875 AGDFVRWCRQVVDLLDQIHKAAPDAEVR 902
>gi|291443514|ref|ZP_06582904.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
gi|291346461|gb|EFE73365.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
Length = 946
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 203/531 (38%), Positives = 283/531 (53%), Gaps = 73/531 (13%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 31 MYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALEQGRKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + + +G + VGLLTGD+++N EA +++MTTE+LRNMLY + L +
Sbjct: 91 SNQKYADLVKRYGADKVGLLTGDNSVNSEAPVVVMTTEVLRNMLY------AGSQSLSGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 145 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMN-----RKLSLNYLQLSTSEVKPYKDGGSR 389
S RPVPL + + L +E H R+++ + ++L+ E + + R
Sbjct: 205 VSEHRPVPLWQHVMAGRRMYDLFEEGTDHGGRGAGRREVNPDLVRLARQESQNTYNPRDR 264
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
RR + + + I P+VID L + +LPAI FIF
Sbjct: 265 RRGK-----------MVREADRERERRQRGRIWTPGRPEVID---RLDNEGLLPAITFIF 310
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----PA---------- 494
+R GC+AAVQ +C + + L + R L + V E P
Sbjct: 311 SRAGCEAAVQ---------QCMYAGLRLNDEDNRRLVREIVEERTASIPGEDLHVLGYYE 361
Query: 495 -IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 362 WLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVK 421
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE--PLVS 611
+T E Q+ GRAGRRGID GH V++ G + AG PL S
Sbjct: 422 WNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGLDPTALAGLAGTRTYPLRS 479
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
F SY M +NL+ Q GR +R+L+E SF +
Sbjct: 480 SFRPSYNMAVNLVH-----------------QFGR--HRSRELLETSFAQF 511
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 14/194 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL+ +++L KRIE + + F RI ++ E L N + G A + G
Sbjct: 723 ERYHRLQRDTRQLEKRIEGRTNTIARTFDRIVALLTELDYLRGNE--VTANGRRLARLYG 780
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG------IKVRLWKNNSSIYEPSTTVI 1070
E +L + LR + L PA+LAA ++LV E + +L + + ++
Sbjct: 781 ELDLLASECLREGVWEGLNPAELAACVSALVYEARQADDAVAPKLPSGPAKV--AMGEMV 838
Query: 1071 NVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDL 1129
+ LD F + E G P D F+ V WASG T E++ + + GD
Sbjct: 839 RIWGRLDALEEDFKINQTEGVGQREP---DLGFAWAVYMWASGRTLDEVLREAEMPAGDF 895
Query: 1130 ARLLRRTIDLLAQI 1143
R ++ ID+L Q+
Sbjct: 896 VRWCKQVIDVLGQV 909
>gi|418474050|ref|ZP_13043578.1| helicase [Streptomyces coelicoflavus ZG0656]
gi|371545339|gb|EHN73971.1| helicase [Streptomyces coelicoflavus ZG0656]
Length = 950
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 202/520 (38%), Positives = 280/520 (53%), Gaps = 58/520 (11%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 46 MYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALEQGRKCFYTTPIKAL 105
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 106 SNQKYADLCRRYGADRVGLLTGDNSVNSDAPVVVMTTEVLRNMLY------AGSQTLLGL 159
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G T++I
Sbjct: 160 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTQVI 219
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGSRRRN 392
S RPVPL + + L +E H + ++ + +++ E +P Y+D RR
Sbjct: 220 VSEHRPVPLFQHVLAGRRMYDLFEEAEGH-KKAVNPDLTRMARLEASRPSYQD--RRRGR 276
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+ K AD + + + P+VI+ L S +LPAI FIF+R
Sbjct: 277 AMKEADRER------------ERRQRSRVWTPSRPEVIE---RLDSEGLLPAITFIFSRA 321
Query: 453 GCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA--------IKGLLKGV 502
GC+AAVQ L DE V ++ P RE ++GL +G+
Sbjct: 322 GCEAAVQQCLYAGLRLNDEGARERVRTLVEERTASIP---REDLHVLGYYEWLEGLERGI 378
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +
Sbjct: 379 AAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADI 438
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
T E Q+ GRAGRRGID GH V++ E L PL S F SY M +N
Sbjct: 439 TPGEFTQLTGRAGRRGIDVEGHAVVLWQRGMNPEHLAGLAGTRTYPLRSSFRPSYNMAVN 498
Query: 623 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
L+ Q GR +R+L+E SF +
Sbjct: 499 LVE-----------------QFGR--HRSRELLETSFAQF 519
Score = 47.8 bits (112), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 107/250 (42%), Gaps = 23/250 (9%)
Query: 928 KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRI 987
++ARL+K I R D ++ E + RL + +L +RIE + + F RI
Sbjct: 704 EIARLRKAI-RAHPCHGCDDREDHARWAE-RYHRLLRDTSQLERRIEGRTNTIARTFDRI 761
Query: 988 SNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 1046
++ E LD + + G+ A + GE +L + LR + L PA+LAA ++L
Sbjct: 762 VALLTE---LDYLRGDEVTEHGKRLARLYGELDLLASECLREGVWEGLSPAELAACVSAL 818
Query: 1047 VSE--------GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSF-LELQEKHGVEIPCC 1097
V E KV + +++ E + + LD F + E G P
Sbjct: 819 VYESRAADDAMAPKVPSGRAKAALGE----TVRIWGRLDALEEDFRISQTEGVGQREP-- 872
Query: 1098 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI-PKLPDVDQRLQKN 1156
D F+ WASG E++ + + GD R ++ ID+L QI P + KN
Sbjct: 873 -DLGFAWAAYMWASGKGLDEVLREAEMPAGDFVRWCKQVIDVLGQIAAAAPGAGSTVPKN 931
Query: 1157 AVDASNVMDR 1166
A A + + R
Sbjct: 932 ARKAVDELLR 941
>gi|383819339|ref|ZP_09974612.1| DEAD/DEAH box helicase [Mycobacterium phlei RIVM601174]
gi|383336975|gb|EID15363.1| DEAD/DEAH box helicase [Mycobacterium phlei RIVM601174]
Length = 914
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 217/615 (35%), Positives = 313/615 (50%), Gaps = 89/615 (14%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQR + EA G V+V APT +GKT++ E A +A+ + FYTTP+KALSNQ
Sbjct: 15 FTLDDFQRRACEALENGHGVLVCAPTGAGKTVVGEFAVHLALASGGKCFYTTPIKALSNQ 74
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K + + +G +GLLTGD +IN +A +++MTTE+LRNMLY ++ L + +
Sbjct: 75 KHNDLVQRYGPEKIGLLTGDQSINGDADVVVMTTEVLRNMLY------ANSPALQGLSYV 128
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVH+L+D RG VWEE+I++ P+EV+++ LSATV+NA+E GWI + G T ++
Sbjct: 129 VMDEVHFLADRMRGAVWEEVILHLPEEVRLVSLSATVSNAEEFGGWIQTVRGDTTVVVDE 188
Query: 338 RRPVPLTWYFSTKTALLPLLD---------EKGK-HMNRKLSLNYLQLSTSEVKPYKDGG 387
RPVPL + L L D KG+ ++ +LS +
Sbjct: 189 HRPVPLWQHVLVGRRLFDLFDYRAARAAAGGKGELRVDPELSRHI--------------- 233
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+ RR + + D + G+ + + P+VI T L +LPAI F
Sbjct: 234 AHRREADRLMDWQPRGRGRNRGRPSMYRPPTR-------PEVIAT---LDREGLLPAITF 283
Query: 448 IFNRRGCDAAVQYLEDCNLL-----DECEMSEV------ELALKRFRILYPDAVREPAIK 496
IF+R GCDAAV+ L + ++EV EL + +L RE
Sbjct: 284 IFSRAGCDAAVKQCLRSPLRLTTDEERARIAEVIDRRCGELPERDLIVLDYHEWRE---- 339
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
GLL+G+AAHHAG LP+++ +EELF GLVK VFATETLA GINMPART VL L K
Sbjct: 340 GLLRGLAAHHAGMLPVFRHTVEELFSAGLVKAVFATETLALGINMPARTVVLERLVKFNG 399
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
+ LT E Q+ GRAGRRGID GH V++ TP E L PL S F S
Sbjct: 400 EQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVLWTPEVDPAEVAGLASTRTFPLRSSFAPS 459
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELC 676
Y M +NL+ Q G E+A +L+E SF Y ++ + +
Sbjct: 460 YNMTINLVQ-----------------QIG--PEQAHRLLEASFAQYQADRSVVGLRRGIE 500
Query: 677 KIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRF 736
+ ++ + +E+ DDA E A L++++ +R ++ R L+R
Sbjct: 501 RGERMLAEIAAELGDDA-----------KPVLEYARLRQQISDRERSQSRASR---LQRR 546
Query: 737 SALKDILKDFENGHL 751
A + L G +
Sbjct: 547 RAASEALASLRRGDI 561
>gi|365866685|ref|ZP_09406292.1| putative ATP-dependent RNA helicase [Streptomyces sp. W007]
gi|364003874|gb|EHM25007.1| putative ATP-dependent RNA helicase [Streptomyces sp. W007]
Length = 926
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 203/531 (38%), Positives = 283/531 (53%), Gaps = 73/531 (13%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+Y+F +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 11 MYEFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALEQGRKCFYTTPIKAL 70
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQKF + + +G + VGLLTGD+++N EA +++MTTE+LRNMLY + L +
Sbjct: 71 SNQKFADLVKRYGADKVGLLTGDNSVNSEAPVVVMTTEVLRNMLY------AGSQSLSGL 124
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 125 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 184
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMN-----RKLSLNYLQLSTSEVKPYKDGGSR 389
S RPVPL + + L +E H R+++ + ++L+ E + + R
Sbjct: 185 VSEHRPVPLWQHVMAGRKMYDLFEEATDHGGRGAGRREVNPDLVRLARQESQNVYNPRDR 244
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
RR + + + I P+VID L + +LPAI FIF
Sbjct: 245 RRGK-----------MVREADRERERRQRGRIWTPGRPEVID---RLDNEGLLPAITFIF 290
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----PA---------- 494
+R GC+AAVQ +C + + L + R L + V E P
Sbjct: 291 SRAGCEAAVQ---------QCLYAGLRLNDEDKRRLVREIVEERTASIPGEDLHVLGYYE 341
Query: 495 -IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 342 WLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVK 401
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE--PLVS 611
+T E Q+ GRAGRRGID GH V++ G + AG PL S
Sbjct: 402 WNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGMDPTALAGLAGTRTYPLRS 459
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
F SY M +NL+ Q GR +R+L+E SF +
Sbjct: 460 SFRPSYNMAVNLVQ-----------------QFGR--HRSRELLETSFAQF 491
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 14/194 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL+ +++L KRIE + + F RI ++ E L N + G A + G
Sbjct: 703 ERYHRLQRDTRQLEKRIEGRTNTIARTFDRIVALLTELDYLRGNE--VTANGRRLARLYG 760
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG------IKVRLWKNNSSIYEPSTTVI 1070
E +L + LR + L PA+LAA ++LV E + +L + + ++
Sbjct: 761 ELDLLASECLREGVWEGLNPAELAACVSALVYEARQADDAVAPKLPSGPAKV--AMGEMV 818
Query: 1071 NVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDL 1129
+ LD F + E G P D F+ V WASG T E++ + + GD
Sbjct: 819 RIWGRLDALEEDFKINQTEGVGQREP---DLGFAWAVYMWASGQTLDEVLREAEMPAGDF 875
Query: 1130 ARLLRRTIDLLAQI 1143
R ++ ID+L Q+
Sbjct: 876 VRWCKQVIDVLGQV 889
>gi|239986574|ref|ZP_04707238.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
11379]
Length = 926
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 203/531 (38%), Positives = 283/531 (53%), Gaps = 73/531 (13%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 11 MYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALEQGRKCFYTTPIKAL 70
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + + +G + VGLLTGD+++N EA +++MTTE+LRNMLY + L +
Sbjct: 71 SNQKYADLVKRYGADKVGLLTGDNSVNSEAPVVVMTTEVLRNMLY------AGSQSLSGL 124
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 125 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 184
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMN-----RKLSLNYLQLSTSEVKPYKDGGSR 389
S RPVPL + + L +E H R+++ + ++L+ E + + R
Sbjct: 185 VSEHRPVPLWQHVMAGRRMYDLFEEGTDHGGRGAGRREVNPDLVRLARQESQNTYNPRDR 244
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
RR + + + I P+VID L + +LPAI FIF
Sbjct: 245 RRGK-----------MVREADRERERRQRGRIWTPGRPEVID---RLDNEGLLPAITFIF 290
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----PA---------- 494
+R GC+AAVQ +C + + L + R L + V E P
Sbjct: 291 SRAGCEAAVQ---------QCMYAGLRLNDEDNRRLVREIVEERTASIPGEDLHVLGYYE 341
Query: 495 -IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 342 WLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVK 401
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE--PLVS 611
+T E Q+ GRAGRRGID GH V++ G + AG PL S
Sbjct: 402 WNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGLDPTALAGLAGTRTYPLRS 459
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
F SY M +NL+ Q GR +R+L+E SF +
Sbjct: 460 SFRPSYNMAVNLVH-----------------QFGR--HRSRELLETSFAQF 491
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 14/194 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL+ +++L KRIE + + F RI ++ E L N + G A + G
Sbjct: 703 ERYHRLQRDTRQLEKRIEGRTNTIARTFDRIVALLTELDYLRGNE--VTANGRRLARLYG 760
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG------IKVRLWKNNSSIYEPSTTVI 1070
E +L + LR + L PA+LAA ++LV E + +L + + ++
Sbjct: 761 ELDLLASECLREGVWEGLNPAELAACVSALVYEARQADDAVAPKLPSGPAKV--AMGEMV 818
Query: 1071 NVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDL 1129
+ LD F + E G P D F+ V WASG T E++ + + GD
Sbjct: 819 RIWGRLDALEEDFKINQTEGVGQREP---DLGFAWAVYMWASGRTLDEVLREAEMPAGDF 875
Query: 1130 ARLLRRTIDLLAQI 1143
R ++ ID+L Q+
Sbjct: 876 VRWCKQVIDVLGQV 889
>gi|325068780|ref|ZP_08127453.1| superfamily II RNA helicase [Actinomyces oris K20]
Length = 896
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 206/551 (37%), Positives = 283/551 (51%), Gaps = 66/551 (11%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
++ A YDF +D FQ + A RG V+V+APT +GKT++ E A + + FY
Sbjct: 21 ELARFAQGYDFPLDPFQEEACGAVERGEGVLVAAPTGAGKTVVGEFAVYLGLVRGLKTFY 80
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
T P+KALSNQK+ + G VGLLTGD+++N A +++MTTE+LRNMLY
Sbjct: 81 TAPIKALSNQKYLDLVARHGQERVGLLTGDTSVNPHADVVVMTTEVLRNMLY-------- 132
Query: 268 ESGLFDVD---VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
SG D+D +V+DEVHYL+D RG VWEE+II+ P EVQ+I LSATV+NA+E W+
Sbjct: 133 -SGSRDLDRLGFVVMDEVHYLADRFRGPVWEEVIIHLPAEVQVISLSATVSNAEEFGDWL 191
Query: 325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPL------LDEKGKHMNR-KLSLNYLQLST 377
GQ+ G+T ++ S RPVPLT + LLPL + E+ + + +L LQ
Sbjct: 192 GQVRGRTAVVVSEERPVPLTQHMMVGRRLLPLYSHPAEIPEQSEQTEQTELERQPLQTGQ 251
Query: 378 SEVKPYKDGGSRRRNSRKHADMNSNN-----IVTSFGQHQLSKNSINAIR---------- 422
+ P ++ + S N S Q K S R
Sbjct: 252 PPLNPELLKAVKQARRAAASGGASKNSYRGRGGGSARGPQPWKRSARGGRAPRRGEGGAR 311
Query: 423 --RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELA 478
R + P + + L +LPAI F+F+R GC+ AV + +L E E + +
Sbjct: 312 TARLKPPSRLQVVTALEGARLLPAIVFVFSRAGCEQAVHQVVSAGVDLTTEAEAARIREV 371
Query: 479 LKRFRILYPDAVREPAIKG-------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 531
++R P + + G L +GVAAHHAG LP++K +EELF GLVKVV+A
Sbjct: 372 IERRTADIPSG--DLGVLGFHFWAHALERGVAAHHAGLLPVFKETVEELFSAGLVKVVYA 429
Query: 532 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591
TETLA GINMPART VL SL K S + L+ E Q+ GRAGRRGID GH V++
Sbjct: 430 TETLALGINMPARTVVLESLRKWNGSAHVTLSPGEYTQLTGRAGRRGIDVEGHAVVLAAD 489
Query: 592 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 651
L PLVS F +Y M +NLL M +
Sbjct: 490 DVEPATVSSLASRRTYPLVSAFRPTYNMAVNLLERMPRMRV------------------- 530
Query: 652 RKLVEQSFGNY 662
R+++EQSF +
Sbjct: 531 REVLEQSFAQF 541
>gi|441516395|ref|ZP_20998145.1| putative helicase [Gordonia hirsuta DSM 44140 = NBRC 16056]
gi|441456981|dbj|GAC56106.1| putative helicase [Gordonia hirsuta DSM 44140 = NBRC 16056]
Length = 936
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 204/528 (38%), Positives = 283/528 (53%), Gaps = 40/528 (7%)
Query: 146 MIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205
M +D + F +D FQR + E G V+V APT +GKT++ E A +A +
Sbjct: 5 MSTLDNFVAGLSFPLDGFQREACEVLESGRGVLVCAPTGAGKTIVGEFAVYLALAQGTKC 64
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
FYTTP+KALSNQK+ + + G VGLLTGD+AIN A I++MTTE+LRNM+Y
Sbjct: 65 FYTTPIKALSNQKYHDLVDVHGAEAVGLLTGDNAINSSAPIVVMTTEVLRNMIY------ 118
Query: 266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325
++ L + +V+DEVH+L+D RG VWEE+I+ V+++ LSATV+NA+E WI
Sbjct: 119 ANSPALQGLSHVVMDEVHFLADRFRGAVWEEVILGLDPSVRVVSLSATVSNAEEFGDWIA 178
Query: 326 QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
+ G TE+I S RPVPL Y L L D K R+ +V P
Sbjct: 179 TVRGDTEVIVSEHRPVPLHQYMLVGGRLFELFDRKSPPHGRR-----------QVNP--- 224
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
R ++ A ++ ++ + G P++I L +LPAI
Sbjct: 225 --ELTRYIKQRALLDHDDRDSGRGHRGRGDRRHRRSTTMPRPRLIQLL---EEDALLPAI 279
Query: 446 WFIFNRRGC-DAAVQYLE-DCNLLDECEMSEVELALKRFRI-LYPDAVREPAIK----GL 498
+FIF+R+GC DA VQ + D NLL+ ++S+V+ ++R L P ++ GL
Sbjct: 280 FFIFSRKGCEDAFVQCVRSDLNLLEPEQVSQVDEVVERHLTDLSPGDAEVLGVEQWWAGL 339
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G AAHHAG LP+++ +EELF RGL KVVFATETLA GINMPAR+ VL L K
Sbjct: 340 RRGFAAHHAGMLPMFRQAVEELFVRGLTKVVFATETLALGINMPARSVVLERLIKYNGEA 399
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+ LT E Q+ GRAGRRGID G+ V++ TP + L A PL S F Y
Sbjct: 400 HVDLTPGEYTQLTGRAGRRGIDVEGNAVVLWTPEVLPDRVAGLAGARTFPLRSSFRPEYN 459
Query: 619 MVLNLLAGAKV---MHLSNES-----DDMKALQAGRSLEEARKLVEQS 658
MVLNL+ V HL S D + R L+ AR+ + ++
Sbjct: 460 MVLNLIHRLGVEGSRHLLRRSFAQFQTDRTLVGQARQLDHARRRLRKT 507
Score = 45.8 bits (107), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 109/258 (42%), Gaps = 27/258 (10%)
Query: 927 TKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLR 986
++VARL+ ++ R+ + + + E++ RL L + I++ + ++F
Sbjct: 680 SEVARLRNRL-RSHPIHKQPGLDKLFRLGEQR-NRLVRDVASLERSIDERKSRLEEDFDI 737
Query: 987 ISNVIHETRALDINTQ---VIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVC 1043
+ V+ E L+ + + + P G+ I E +L +A +R I L P +LAAV
Sbjct: 738 VVAVLRELGYLESDGRGGLQVTPTGDVLRRIYAETDLLVAECIRAGIWHRLSPVELAAVV 797
Query: 1044 ASLVSE------GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKH--GVE-- 1093
+S+V + G + + ++ E + V + E+Q +H G E
Sbjct: 798 SSMVYQSRRDTYGGGIDSMPGSKTVREALAETLAVWQATN-------EVQARHSGGSESL 850
Query: 1094 IPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLPD 1148
+ D+ F + AWA+G + E + + L GD R R+ IDLL QI
Sbjct: 851 VTAEPDTGFCAPISAWAAGRSLDEALTAASAGGNLLSPGDFVRWNRQVIDLLEQIRNSVG 910
Query: 1149 VDQRLQKNAVDASNVMDR 1166
D L A A + R
Sbjct: 911 ADDPLAGTARRAVKSLRR 928
>gi|387875716|ref|YP_006306020.1| ATP-dependent DNA helicase HelY [Mycobacterium sp. MOTT36Y]
gi|443305423|ref|ZP_21035211.1| ATP-dependent DNA helicase HelY [Mycobacterium sp. H4Y]
gi|386789174|gb|AFJ35293.1| ATP-dependent DNA helicase HelY [Mycobacterium sp. MOTT36Y]
gi|442766987|gb|ELR84981.1| ATP-dependent DNA helicase HelY [Mycobacterium sp. H4Y]
Length = 926
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 221/621 (35%), Positives = 317/621 (51%), Gaps = 79/621 (12%)
Query: 145 EMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRR 204
E++++ A F +D FQ + A RG V+V APT +GKT++ E A +A +
Sbjct: 3 ELVELTRFAMDLPFALDGFQHRACVALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGGK 62
Query: 205 IFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGM 264
FYTTPLKALSNQK + +G + +GLLTGD ++N +A +++MTTE+LRNMLY
Sbjct: 63 CFYTTPLKALSNQKHTDLTARYGRDRIGLLTGDMSVNADAPVVVMTTEVLRNMLY----- 117
Query: 265 VSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
+ L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LSATV+NA+E GWI
Sbjct: 118 -ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGWI 176
Query: 325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD--------EKGKHMNRKLSLNYLQLS 376
+ G T ++ RPVPL + L L D + G +++ + L+
Sbjct: 177 QTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRHSDTPEQPGAPREPRVNPDLLRHI 236
Query: 377 TSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL 436
T RR + + +D S G+ + S R + P D + L
Sbjct: 237 TH-----------RREADRMSDWQPRR---SAGRGRPPARS-GRPRLYRTPARPDVIASL 281
Query: 437 RSRDMLPAIWFIFNRRGCDAAVQY-----LEDCNLLDECEMSEV------ELALKRFRIL 485
+ +LPAI F+F+R GCDAAVQ L+ + +++EV +LA +L
Sbjct: 282 DAEGLLPAITFVFSRAGCDAAVQQCLRSPLQLTTQEERAQIAEVIEHRCGDLADADLAVL 341
Query: 486 YPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
RE GLL+G+AAHHAG LP ++ +EELF GLV+ VFATETLA GINMPART
Sbjct: 342 GYYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVRAVFATETLALGINMPART 397
Query: 546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 605
VL L K + LT E Q+ GRAGRRGID GH V++ P E E + AG
Sbjct: 398 VVLERLVKFNGEQHVALTPGEYTQLTGRAGRRGIDVEGHAVVLWNPTEETTEPSAV--AG 455
Query: 606 VE-----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 660
+ PL S F SY M +NL+ Q G E+A +L+EQSF
Sbjct: 456 LASTRTFPLRSSFAPSYNMTINLVQ-----------------QMG--PEQAHRLLEQSFA 496
Query: 661 NYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEM-ANLQEELKA 719
Y ++ L + + D + EI+ + K+ L Y M A + E +A
Sbjct: 497 QYQADRSVVG----LVRGIERGDAMLGEIAGELGGPKAPIL----EYARMRARISEMERA 548
Query: 720 EKRFRTELRRRMELKRFSALK 740
+ R RR+ +AL+
Sbjct: 549 QSRASRLQRRQAATDALAALR 569
>gi|50303465|ref|XP_451674.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640806|emb|CAH02067.1| KLLA0B03179p [Kluyveromyces lactis]
Length = 1001
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 194/512 (37%), Positives = 287/512 (56%), Gaps = 28/512 (5%)
Query: 125 EEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTS 184
E+ +W + L + + F NE+ V A + F +D FQ+ ++ +G SV V+A TS
Sbjct: 285 EKVEWAHMVDLNSNMDNF-NEL--VPNPARTWPFELDTFQKEAVYHLEQGDSVFVAAHTS 341
Query: 185 SGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREA 244
+GKT++AE A + N + YT+P+KALSNQKFR+F+E F D +VGL+TGD IN EA
Sbjct: 342 AGKTVVAEYAIAMSKRNMTKTIYTSPIKALSNQKFRDFKEDFDDVDVGLITGDVQINPEA 401
Query: 245 QILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKE 304
LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++D +RG VWEE+II P+
Sbjct: 402 DCLIMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQTRGVVWEEVIIMLPQH 455
Query: 305 VQIICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKH 363
V+ I LSATV N E A W+G+ K +I++ +RPVPL K ++P++++K +
Sbjct: 456 VKFILLSATVPNTFEFANWVGRTKQKNIYVISTPKRPVPLEINIWAKKKVIPVINDKREF 515
Query: 364 MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 423
+ + + L+ S + G S +NS K+ + N + G + N
Sbjct: 516 LPQNFREHKELLTASSI-----GSS--KNSPKNGKPSGNQKTITKGSKGVGAKGSNMSTF 568
Query: 424 SQVPQVIDTLWH-----LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE---- 474
+ T W+ LR+ D+LPA+ F+F+++ C+ +E +LL E S
Sbjct: 569 YKYDGASKTTWYDLLKNLRANDLLPAVVFVFSKKRCEEYADSIEAADLLTAKERSAIHIF 628
Query: 475 VELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE 533
+E ++ R R + + I+ LL +G+A HH G LPI K IE LF +G VK++FATE
Sbjct: 629 IEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATE 688
Query: 534 TLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593
T A G+N+P RT V S + K + L E QMAGRAGRRG D G V+++
Sbjct: 689 TFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEFTQMAGRAGRRGKDKTGTVIVMSYSRP 748
Query: 594 GAEECCKLLFAGVEP-LVSQFTASYGMVLNLL 624
E K + GV L SQF +Y M+LNLL
Sbjct: 749 IDEASFKDVSLGVPTRLQSQFRLTYNMILNLL 780
>gi|227504325|ref|ZP_03934374.1| helicase [Corynebacterium striatum ATCC 6940]
gi|227198973|gb|EEI79021.1| helicase [Corynebacterium striatum ATCC 6940]
Length = 939
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 210/562 (37%), Positives = 289/562 (51%), Gaps = 69/562 (12%)
Query: 160 IDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKF 219
+D FQ A G V+V APT +GKT++ E A ++ R FYTTP+KALSNQK+
Sbjct: 17 LDDFQVEGCRAVEEGHGVLVCAPTGAGKTIVGEFAVSLALSRGTRCFYTTPIKALSNQKY 76
Query: 220 REFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD-VDVIV 278
+ G + VGLLTGD +IN +A+IL+MTTE+LRNM+Y +ESG D + +V
Sbjct: 77 HDLVAAHGADAVGLLTGDVSINSQAEILVMTTEVLRNMIY-------AESGALDRLSHVV 129
Query: 279 LDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSR 338
+DEVH+L+D SRG VWEE+I+ + V II LSATV+N++E W+ + G T +I S
Sbjct: 130 MDEVHFLADASRGAVWEEVILNLHESVSIIGLSATVSNSEEFGEWLSAVRGDTTVIVSDH 189
Query: 339 RPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVK-----PYKDGGSRRRN 392
RPVPL + + PL + E G +N +L+ +L + + G R R
Sbjct: 190 RPVPLDQWMMIGRKIYPLFEPESGGQVNAELARRIRRLEAGDSDDGRNDAHSGQGFRARA 249
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
K D +S N G+ S+ + R P+ TL L+ DMLPAI FIF+R
Sbjct: 250 RHKGGDRDSRNSRGGRGRSGASRPQ-DRYRPLGRPE---TLQVLQGMDMLPAITFIFSRA 305
Query: 453 GCDAAV-QYLEDCNLLDECEMSE---------VE---------LALKRFRILYPDAVREP 493
GCD A+ Q L +L E SE VE L KR+R
Sbjct: 306 GCDGALHQCLRSRMVLTTQEESERIKAIIDAGVEGIPEEDLQVLDFKRWR---------- 355
Query: 494 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
+ L +G AAHHAG LP ++ +E+LF +GLV+ VFATETLA GINMPART +L L K
Sbjct: 356 --EALSRGFAAHHAGMLPAFRHIVEDLFVQGLVRAVFATETLALGINMPARTVILEKLVK 413
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQF 613
+ LT + Q+ GRAGRRGID G+ V+ P L PL+S F
Sbjct: 414 FNGEAHVDLTPGQYTQLTGRAGRRGIDTIGNAVVQWAPAMDPHAVAGLASTRTYPLISTF 473
Query: 614 TASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKD 673
Y M +NLL EE+ +L+E+SF + ++
Sbjct: 474 APGYNMAINLLGML-------------------GFEESLRLLEKSFAQFQADGSVVEETR 514
Query: 674 ELCKIQKETDVLTSEISDDAID 695
E+ K + L +++ DDAID
Sbjct: 515 EIEKAEHRVRELRNQL-DDAID 535
Score = 46.6 bits (109), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 41/268 (15%)
Query: 914 EYHDAVENYKEQ------RTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSK 967
E DA+ N+ R ++A + +K+AR E ++ +K+ V+ + + + R
Sbjct: 691 ELRDAIRNHPAHSWPATDREQLAGIAQKLARRE--RDLEKVSKKVERATDTLGKTFGRIV 748
Query: 968 RLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLR 1027
L ++ +E G+ E R VI GE + I E++L +A L+
Sbjct: 749 DLLSEMDYVEFEGFGEDRR---------------PVITDEGERLSQIHSESDLLVAQCLK 793
Query: 1028 NKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIY-EPSTTVINVINVLDEHRSSFLEL 1086
I +L PA+LA V ASL L++N EP + + ++ + EL
Sbjct: 794 RGIWNELDPAELAGV-ASLC-------LFENRKETRGEPEAATDAMADAMEATYRIYTEL 845
Query: 1087 ---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-----DCALDDGDLARLLRRTID 1138
+ +H + ++ F+ + WA+G M L GD R R+ +D
Sbjct: 846 IADEARHNLPRTREPEAGFALAIHQWAAGAPLGYCMAAANEAGAELTPGDFVRWCRQVVD 905
Query: 1139 LLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
+L QI K ++ +++NA A + + R
Sbjct: 906 MLQQIAKT-GYEEDIRRNARRAIDAIQR 932
>gi|376293256|ref|YP_005164930.1| putative helicase [Corynebacterium diphtheriae HC02]
gi|372110579|gb|AEX76639.1| putative helicase [Corynebacterium diphtheriae HC02]
Length = 930
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 219/608 (36%), Positives = 317/608 (52%), Gaps = 66/608 (10%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D+FQ +A G V+V APT +GKT++ E A ++ Q + FYTTP+
Sbjct: 14 FAARQKFPLDEFQIRGCQAVESGRGVLVCAPTGAGKTIVGEFAVSLAISQQTKCFYTTPI 73
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKF + + G++ VGLLTGD +INR+A I++MT E+LRNM+Y + L
Sbjct: 74 KALSNQKFHDLVKAHGEDKVGLLTGDVSINRDADIVVMTAEVLRNMIY------ADSEAL 127
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ +V+DE+H+LSD SRG VWEE I+ V +I LSATV+N++E W+ + G T
Sbjct: 128 DRLSHVVMDEIHFLSDSSRGAVWEEAILGLDASVNVIGLSATVSNSEEFGRWLNTVRGDT 187
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL--SLNYLQLSTSEVKPY---- 383
E+I S RPVPL + + PL E G +N +L + +L+ +T++ Y
Sbjct: 188 EIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLVEHIEHLEGTTTDGTEYGRAQ 246
Query: 384 -KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
+ GG R R+ M S+N + H+ S A+ R D L L+ +DML
Sbjct: 247 LQAGGFRNRSR----AMGSDNRASRRSPHRRSDKH-RALSRP------DVLHILQEQDML 295
Query: 443 PAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE----------VELALKRFRILYPDAVR 491
PAI FIF+R GCDAA+ Q + +L E SE + + R+L R
Sbjct: 296 PAITFIFSRAGCDAALHQCMRSSLVLTTQEESEEISDIITAGVAGIPEEDLRLLEYRRWR 355
Query: 492 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
+ L++G AAHHAG LP ++ +E+LF +GLV+ VFATETLA GINMPART VL L
Sbjct: 356 Q----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFATETLALGINMPARTVVLEKL 411
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
K G LT + Q+ GRAGRRGID G+ V+ P + L PLVS
Sbjct: 412 VKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWAPAMDPGQVAGLASTRTYPLVS 471
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 671
F Y M +NLL K + E A +L+E+SF + ++
Sbjct: 472 TFAPGYNMSVNLL---------------KTI----GFEPAHRLLEKSFAQFQADGSVVDD 512
Query: 672 KDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEMANLQEELKAEKRFRTEL--- 727
+ +++ D LT ++ A D ++ + ++ E ++ EL E+R L
Sbjct: 513 IKAIESLEESVDQLTKQLH-AAFDSHNQGGAGDVDSFLEYIRIRRELTEEERKHKRLSIE 571
Query: 728 RRRMELKR 735
+R ME R
Sbjct: 572 QRDMETTR 579
Score = 44.3 bits (103), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 100/232 (43%), Gaps = 14/232 (6%)
Query: 938 RTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL 997
R+ ++K D + E+ ++ + K E + G + F RI N++ E +
Sbjct: 694 RSHPAHHWRKREDLARVGEQLVREQRMLEAAQRKVNEATDTLG-RTFDRIINLLAEYDYV 752
Query: 998 DIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRL 1055
+ + VI GE I E++L +A L+ I DL PA+L+ V + E +
Sbjct: 753 EFHDGVPVITEEGENLCQIHNESDLLVAQCLKRGIWDDLDPAELSGVVSMCTFENRRETR 812
Query: 1056 WKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTW 1115
+ +++ E + + N + + +E + + ++ + + + F+ + WA+G
Sbjct: 813 GEPDAATEEMAKAMNNTVRIWEELSTD----ERRYRLPVTRYPEGGFALAMHQWAAGAPL 868
Query: 1116 REMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQRLQKNAVDA 1160
+ A L GD R R+ +DLL Q+ + +R + A+DA
Sbjct: 869 GYCIAAAAESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRRAARKAIDA 920
>gi|420986903|ref|ZP_15450061.1| putative helicase helY [Mycobacterium abscessus 4S-0206]
gi|392186774|gb|EIV12419.1| putative helicase helY [Mycobacterium abscessus 4S-0206]
Length = 914
Score = 324 bits (830), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 211/544 (38%), Positives = 287/544 (52%), Gaps = 50/544 (9%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + A G V+V APT +GKT++ E A +A R+ FYTTP+KALSNQ
Sbjct: 10 FALDPFQVRACTALENGHGVLVCAPTGAGKTIVGEFAVHLALAAGRKCFYTTPIKALSNQ 69
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K + +G VGLLTGDS+IN +A +++MTTE+LRNMLY + L + +
Sbjct: 70 KHNDLVSVYGPEKVGLLTGDSSINSDAPVVVMTTEVLRNMLY------ADSPALHGLSYV 123
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVH+L+D RG VWEE+I++ P++V + LSATV+NA+E GWI + G T ++
Sbjct: 124 VMDEVHFLADRFRGAVWEEVILHLPEDVALASLSATVSNAEEFGGWIQTVRGDTTVVVDE 183
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RPVPL + L L D + + R+ S + S+V P G +R R+ A
Sbjct: 184 TRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG--TGNPSQVDP---GLTRYIAQRRQA 237
Query: 398 DMNSN-NIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
D ++ + G Q + R P+VI L +LPAI FIF+R GCD
Sbjct: 238 DRFADFDRPRRRGPQQRTSRPPTLYRPPSRPEVIT---RLDEDGLLPAITFIFSRAGCDG 294
Query: 457 AV-QYLED-CNLLDECEMSEVELALKRFRILYPDAV---------REPAIKGLLKGVAAH 505
AV Q L L E E E+ + + R P+A RE GLL+G+AAH
Sbjct: 295 AVAQCLRSRLRLTTEEERREIIVIIDRRTEGLPEADLDVLGYWQWRE----GLLRGIAAH 350
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP+++ +EELF +GLVK VFATETLA GINMPART VL L K LT
Sbjct: 351 HAGMLPVFRHTVEELFTKGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHAALTPG 410
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E Q+ GRAGRRGID GH V++ TP E L PL S F SY M +NL
Sbjct: 411 EYTQLTGRAGRRGIDVEGHAVVLWTPEVEPTEIAGLASTRTFPLRSSFAPSYNMTINL-- 468
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 685
+H + AR+L+E+SF Y ++ + + +K D +
Sbjct: 469 ----VHRMGP-------------DPARELLERSFAQYQADRSVVGLVRGIERGRKMLDEI 511
Query: 686 TSEI 689
E+
Sbjct: 512 AGEL 515
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 18/208 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETAAA 1013
E+ R++ + +L K++ S + F RI ++ E ++ + ++ + G A
Sbjct: 693 ERYLRIERDNAQLQKKVAAATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLLAR 752
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
I E++L +A LR + LKPA+LAAV ++++ E S+ E T +
Sbjct: 753 IYSESDLLVAECLRRGLWAGLKPAELAAVASAVLYES----RGDTVSATGEAPTAALR-- 806
Query: 1074 NVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCALD 1125
L E + L +++H + +D F V WA+ + AL
Sbjct: 807 GALAETHRALARLRRDEQQHHLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTALP 866
Query: 1126 DGDLARLLRRTIDLLAQIPK-LPDVDQR 1152
GD R R+ +DLL QI K PD + R
Sbjct: 867 AGDFVRWCRQVVDLLDQIHKAAPDAEVR 894
>gi|411001332|ref|ZP_11377661.1| ATP-dependent RNA helicase [Streptomyces globisporus C-1027]
Length = 926
Score = 324 bits (830), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 203/531 (38%), Positives = 283/531 (53%), Gaps = 73/531 (13%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 11 MYDFGLDPFQIEACKALEAGKGVLVAAPTGSGKTIVGEFAVHLALEQGRKCFYTTPIKAL 70
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + + +G + VGLLTGD+++N EA +++MTTE+LRNMLY + L +
Sbjct: 71 SNQKYADLVKRYGADKVGLLTGDNSVNSEAPVVVMTTEVLRNMLY------AGSQSLSGL 124
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 125 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 184
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMN-----RKLSLNYLQLSTSEVKPYKDGGSR 389
S RPVPL + + L +E H R+++ + ++L+ E + + R
Sbjct: 185 VSEHRPVPLWQHVMAGRRMYDLFEEGTDHGGRGAGRREVNPDLVRLARQESQNTYNPRDR 244
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
RR + + + I P+VID L + +LPAI FIF
Sbjct: 245 RRGK-----------MVREADRERERRQRGRIWTPGRPEVID---RLDNEGLLPAITFIF 290
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----PA---------- 494
+R GC+AAVQ +C + + L + R L + V E P
Sbjct: 291 SRAGCEAAVQ---------QCLYAGLRLNDEDNRRLVREIVEERTASIPGEDLHVLGYYE 341
Query: 495 -IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 342 WLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVK 401
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE--PLVS 611
+T E Q+ GRAGRRGID GH V++ G + AG PL S
Sbjct: 402 WNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGLDPTALAGLAGTRTYPLRS 459
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
F SY M +NL+ Q GR +R+L+E SF +
Sbjct: 460 SFRPSYNMAVNLVQ-----------------QFGR--HRSRELLETSFAQF 491
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 14/194 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL+ +++L KRIE + + F RI ++ E L N + G A + G
Sbjct: 703 ERYHRLQRDTRQLEKRIEGRTNTIARTFDRIVALLTELDYLRGNE--VTANGRRLARLYG 760
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG------IKVRLWKNNSSIYEPSTTVI 1070
E +L + LR + L PA+LAA ++LV E + +L + + ++
Sbjct: 761 ELDLLASECLREGVWEGLNPAELAACVSALVYEARQADDAVAPKLPAGPAKV--AMGEMV 818
Query: 1071 NVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDL 1129
+ LD F + E G P D F+ V WASG T E++ + + GD
Sbjct: 819 RIWGRLDALEEDFKINQTEGVGQREP---DLGFAWAVYMWASGRTLDEVLREAEMPAGDF 875
Query: 1130 ARLLRRTIDLLAQI 1143
R ++ ID+L Q+
Sbjct: 876 VRWCKQVIDVLGQV 889
>gi|345853069|ref|ZP_08805984.1| helicase [Streptomyces zinciresistens K42]
gi|345635471|gb|EGX57063.1| helicase [Streptomyces zinciresistens K42]
Length = 935
Score = 324 bits (830), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 219/619 (35%), Positives = 318/619 (51%), Gaps = 87/619 (14%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 31 MYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALLQGKKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +GD VGLLTGD++IN EA +++MTTE+LRNMLY + L +
Sbjct: 91 SNQKYADLCRRYGDGTVGLLTGDNSINSEAPVVVMTTEVLRNMLY------AGSQTLLGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G T++I
Sbjct: 145 GHVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTQVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE-VKP-YKDGGSRRRN 392
S RPVPL + + L +E G+ + ++ + +L+ E +P Y+D RR
Sbjct: 205 VSEHRPVPLFQHVLAGRRMYDLFEE-GEGHKKAVNPDLTRLARMEATRPSYQD----RRR 259
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R + + + + P+VI+ L + +LPAI FIF+R
Sbjct: 260 GRAMREADRER----------ERRQRTRVWTPGRPEVIE---RLDAEGLLPAITFIFSRA 306
Query: 453 GCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAVRE-PA-----------IK 496
C+AAVQ +C + + L A +R R L + PA ++
Sbjct: 307 ACEAAVQ---------QCLFAGLRLNDDEARERVRALVEERTSAIPAGDLHVLGYYEWLE 357
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 358 GLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNG 417
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
+T E Q+ GRAGRRGID GH V++ E L PL S F S
Sbjct: 418 EQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGSSPEHLAGLAGTRTYPLRSSFKPS 477
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELC 676
Y M +NL+ Q GR +R+L+E SF + ++ ++
Sbjct: 478 YNMAVNLVE-----------------QFGR--HRSRELLETSFAQFQADKSVVGISRQVQ 518
Query: 677 KIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRF 736
+ ++ D ++ D +++ A L+ ELK + TEL R+ +R
Sbjct: 519 RNEEGLDGYKESMTCHLGD-----------FEDYARLRRELKDRE---TELARQGASQRR 564
Query: 737 SALKDILKDFENG---HLP 752
S L+ + G H+P
Sbjct: 565 SEAAVALEKLKPGDVIHVP 583
Score = 49.3 bits (116), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 108/261 (41%), Gaps = 21/261 (8%)
Query: 910 HMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 969
H+ E H + ++ARL+K I R D ++ E + RL + L
Sbjct: 671 HIPPERHRKRRSQAADDREIARLRKAI-RAHPCHGCDDREDHARWAE-RYHRLLRDTSHL 728
Query: 970 TKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRN 1028
+RIE + + F RI ++ E LD + + G+ A + GE +L + LR
Sbjct: 729 ERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEHGKRLARLYGELDLLASECLRE 785
Query: 1029 KILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT-------VINVINVLDEHRS 1081
++ L PA+LAA ++LV E R+ + + PS + + LD
Sbjct: 786 RVWEGLGPAELAACVSALVYE---ARVGDDAMAPKLPSGRAKAALGETVRIWGRLDALEE 842
Query: 1082 SF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 1140
F + E G P D F+ WASG E++ + + GD R ++ ID+L
Sbjct: 843 DFGISQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAGDFVRWCKQVIDVL 899
Query: 1141 AQI-PKLPDVDQRLQKNAVDA 1160
QI P + KNA A
Sbjct: 900 GQIAAAAPAEGSTVAKNARKA 920
>gi|256269132|gb|EEU04467.1| Ski2p [Saccharomyces cerevisiae JAY291]
Length = 1287
Score = 324 bits (830), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 210/624 (33%), Positives = 335/624 (53%), Gaps = 69/624 (11%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V L ++++ F +E+I A + F +D FQ+ ++ +G SV V+A TS+GK
Sbjct: 301 EWAHVVDLNHKIENF-DELIP--NPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 357
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A N + YT+P+KALSNQKFR+F+ETF D N+GL+TGD IN +A L
Sbjct: 358 TVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCL 417
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V+
Sbjct: 418 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 471
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-- 364
I LSATV N E A WIG+ K +I++ +RPVPL K L+P++++ + +
Sbjct: 472 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEA 531
Query: 365 NRKLSLNYLQLSTSEVKPYKD----GGSRRRNSR-----------------KHADMNSNN 403
N + L +++ P K GGS R A+ +
Sbjct: 532 NFRKHKEILNGESAKGAPSKTDNGRGGSTARGGHGGSNTRGGRGGRGNSTRGGANRGGSR 591
Query: 404 IVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED 463
+ G ++ + + + P++++ +LR R++LP + F+F+++ C+ +LE
Sbjct: 592 GAGAIGSNKRKFFTQDGPSKKTWPEIVN---YLRKRELLPMVVFVFSKKRCEEYADWLEG 648
Query: 464 CNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KGLL-KGVAAHHAGCLPIWKSFIE 518
N + E S++ + +++ R+ P I + LL +G+A HH G LPI K IE
Sbjct: 649 INFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIE 708
Query: 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578
LF +G +KV+FATET A G+N+P RT + SS+ K +G +LT E QMAGRAGRRG
Sbjct: 709 ILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRG 768
Query: 579 IDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNLLAGAKVMHLSNESD 637
+D+ G V+++ + K + GV L SQF +Y M+LNLL
Sbjct: 769 LDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLR------------ 816
Query: 638 DMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL---TSEISDDAI 694
++AL+ ++++ SF + + ++ +Q+E + + EI D+ I
Sbjct: 817 -IEALR-------VEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYKSCEICDNDI 868
Query: 695 DRKSRRLLSEAAYKE-MANLQEEL 717
++ +L AYKE NL +E+
Sbjct: 869 EKFLELML---AYKEATVNLMQEM 889
>gi|455649626|gb|EMF28422.1| helicase [Streptomyces gancidicus BKS 13-15]
Length = 937
Score = 323 bits (829), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 213/608 (35%), Positives = 318/608 (52%), Gaps = 64/608 (10%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 31 MYDFGLDPFQVEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALEQGKKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +G VGLLTGD+++N +A +++MTTE+LRNMLY G L +
Sbjct: 91 SNQKYADLCRRYGTGKVGLLTGDNSVNSDAPVVVMTTEVLRNMLYAGSGT------LLGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 145 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
S RPVPL + + L +E G+ + ++ + +++ E G RRR
Sbjct: 205 VSEHRPVPLFQHVLAGRRMYDLFEE-GEGHKKAVNPDLTRMARMEAS-RPSWGDRRRGR- 261
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
N + + + + + + P+VI+ L + +LPAI FIF+R C
Sbjct: 262 -------NGMREA--DRERERRQRSRVWTPGRPEVIE---RLDAEGLLPAITFIFSRAAC 309
Query: 455 DAAVQYLEDCNLL--DECEMSEV-ELALKRFRILYPDAVREPA----IKGLLKGVAAHHA 507
+AAVQ L DE ++V +L +R + P+ + ++GL +G+AAHHA
Sbjct: 310 EAAVQQCLHAGLRLNDEEARAKVRDLVEERTASIPPEDLHVLGYYEWLEGLERGIAAHHA 369
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
G LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T E
Sbjct: 370 GMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITPGEF 429
Query: 568 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 627
Q+ GRAGRRGID GH V++ E L PL S F SY M +NL+
Sbjct: 430 TQLTGRAGRRGIDVEGHAVVLWQRGMNPEHLAGLAGTRTYPLRSSFKPSYNMAVNLVE-- 487
Query: 628 KVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTS 687
Q GR +R+L+E SF + ++ ++ + ++ + +
Sbjct: 488 ---------------QFGR--HRSRELLETSFAQFQADKSVVGISRQVQRNEEGLEGYKA 530
Query: 688 EISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFE 747
++ D ++E A L+ ELK + EL R+ +++R + L+
Sbjct: 531 SMTCHLGD-----------FEEYARLRRELKDRE---NELARQGQMQRRAEAAVALEKLR 576
Query: 748 NG---HLP 752
G H+P
Sbjct: 577 PGDIIHVP 584
Score = 47.4 bits (111), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 18/224 (8%)
Query: 928 KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRI 987
++ARL+K + R + D ++ E + RL + +L +RIE + + F RI
Sbjct: 690 EIARLRKAL-RAHPCHGCQDREDHARWAE-RYHRLLRDTSQLERRIEGRTNTIARTFDRI 747
Query: 988 SNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV 1047
++ E L + + G+ A + GE +L + LR ++ L PA+LAA ++LV
Sbjct: 748 VALLTEMDYLRGDE--VTEHGKRLARLYGELDLLASECLRERVWEGLGPAELAACVSALV 805
Query: 1048 SEGIKVRLWKNNSSIYEPSTT-------VINVINVLDEHRSSF-LELQEKHGVEIPCCLD 1099
E R+ + ++ PS ++ + LD F + E G P D
Sbjct: 806 YES---RVADDATAPKLPSGRAKAALGEMVRIWGRLDALEEDFRISQTEGVGQREP---D 859
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 1143
F+ WASG E++ + + GD R ++ ID+L QI
Sbjct: 860 LGFAWAAYMWASGKGLDEVLREAEMPAGDFVRWCKQVIDVLGQI 903
>gi|374611638|ref|ZP_09684423.1| DEAD/DEAH box helicase domain protein [Mycobacterium tusciae JS617]
gi|373548968|gb|EHP75646.1| DEAD/DEAH box helicase domain protein [Mycobacterium tusciae JS617]
Length = 929
Score = 323 bits (829), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 216/611 (35%), Positives = 307/611 (50%), Gaps = 71/611 (11%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQR++ EA G V+V APT +GKT++ E A +A R+ FYTTP+KALSNQ
Sbjct: 18 FSLDPFQRTACEALENGHGVLVCAPTGAGKTVVGEFAVHLALAAGRKCFYTTPIKALSNQ 77
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K + +G +GLLTGD +IN A +++MTTE+LRNMLY ++ L + +
Sbjct: 78 KHNDLARRYGAEKIGLLTGDQSINGNADVVVMTTEVLRNMLY------ANSPTLHGLSHV 131
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVH+L+D RG VWEE+I++ P +V ++ LSATV+NA+E GWI + G T ++
Sbjct: 132 VMDEVHFLADRMRGAVWEEVILHLPDDVLLVSLSATVSNAEEFGGWIQTVRGDTTVVVDE 191
Query: 338 RRPVPLTWYFSTKTALLPLLDEK---GKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
RPVPL + + L D + + R+L ++ L S R +
Sbjct: 192 HRPVPLWQHVMVGKRVFDLFDYRATGARKSGRELLVDPELLRHI---------SHRLEAD 242
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
+ AD + G+ + + P D + L ++LPAI FIF+R GC
Sbjct: 243 RLADWQPRGRGRNRGRPSIYRG----------PSRPDVIGTLEREELLPAITFIFSRAGC 292
Query: 455 DAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAV---------REPAIKGLLKGVA 503
DAAV+ L E + + + R P+A RE GLL+G+A
Sbjct: 293 DAAVKQCLRSSLRLTTNSERARIAEVIDRRCADLPEADLVILDYHEWRE----GLLRGLA 348
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
AHHAG LP+++ +EELF GLVK VFATETLA GINMPART VL L K + LT
Sbjct: 349 AHHAGMLPVFRHTVEELFVAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLT 408
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA---EECCKLLFAGVEPLVSQFTASYGMV 620
E Q+ GRAGRRGID GH V++ TP + E L PL S F SY M
Sbjct: 409 PGEYTQLTGRAGRRGIDVEGHAVVLWTPNDSTVDPAEVAGLASTRTFPLRSSFAPSYNMT 468
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
+NL+ Q G + +A KL+E SF Y ++ + + +K
Sbjct: 469 INLVH-----------------QMGPA--QAHKLLESSFAQYQADRSVVGLVRGIERGEK 509
Query: 681 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALK 740
+ + +E++D A S R E E L+ ++ +R ++ R L R A
Sbjct: 510 MLEEIAAELADGA---PSPRAEGEIPILEYVRLRLQISERERAQSRASR---LHRRKAAN 563
Query: 741 DILKDFENGHL 751
D L G +
Sbjct: 564 DALGSLRRGDI 574
>gi|284032976|ref|YP_003382907.1| DSH domain-containing protein [Kribbella flavida DSM 17836]
gi|283812269|gb|ADB34108.1| DSH domain protein [Kribbella flavida DSM 17836]
Length = 957
Score = 323 bits (829), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 216/613 (35%), Positives = 309/613 (50%), Gaps = 64/613 (10%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V E ++YDF +D+FQ + A G V+V+APT SGKTL+ E A + ++ FYT
Sbjct: 20 VKEFRALYDFDLDEFQLRACAALEDGHQVLVAAPTGSGKTLVGEFAVHLALQRGQKCFYT 79
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + +G + VGLLTGD++IN EA I++MTTE+LRNMLY +
Sbjct: 80 TPIKALSNQKYADLVRRYGQDKVGLLTGDNSINSEAPIVVMTTEVLRNMLY------AGS 133
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L + +V+DEVHYL+D +RG VWEE+II+ P V ++ LSATV+NA+E W+ +
Sbjct: 134 HTLLGLSYVVMDEVHYLADRARGAVWEEVIIHLPDSVAVVSLSATVSNAEEFGDWLETVR 193
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLS--TSEVKPYKDG 386
G T ++ +RPVPL + L L + Y S + P K G
Sbjct: 194 GNTVVVLEEKRPVPLFQHVMVGKRLHDLFAGEAPTARAGAPALYGNPSGKSKSGNPAKSG 253
Query: 387 GSRRRNSRKHADMNSNNIVT------SFGQHQLSKNSINAIRRSQ------------VPQ 428
+ A + ++V + +++ ++ RR + P
Sbjct: 254 NPAKSGPPASAAPDLRDLVNPQLVRIAREDNRIFRDDSRKPRRRRDLPKNRPSKSHFTPY 313
Query: 429 VIDTLWHLRSRDMLPAIWFIFNRRGC-DAAVQYLED-CNLLDECEMSEVELALKRFRILY 486
D + L + +LPAI+FIF+R+GC DA +Q L L E E++ L
Sbjct: 314 RSDVVEELDAGALLPAIYFIFSRKGCEDAMLQCLRSGLRLTKPSERDEIKRVLAERTADL 373
Query: 487 PDAVREPAIKG-------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 539
PD + + G L +G+AAHHAG L +K +EELF RGL+KVVFATETLA GI
Sbjct: 374 PD--EDLGVLGYHDFAEALSRGIAAHHAGMLAAFKEVVEELFARGLIKVVFATETLALGI 431
Query: 540 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 599
NMPART VL LSK + +T E Q+ GRAGRRGID GH V++ P
Sbjct: 432 NMPARTVVLEKLSKWNGEAHVDITPGEYTQLTGRAGRRGIDVEGHAVVLWQPGFDPRAVA 491
Query: 600 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 659
L PL S F+ SY M +NL+ Q GR AR ++E SF
Sbjct: 492 GLASTRTYPLRSSFSPSYNMAVNLVR-----------------QVGRG--RARDMLELSF 532
Query: 660 GNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKA 719
+ ++ + +Q+ T+ L E ++ID LS A + +E +
Sbjct: 533 AQFQSDQAVVGLARQ---VQRNTEAL--EGYKESIDCHLGDFLSYADLRRRIGERESSGS 587
Query: 720 EKRFRTELRRRME 732
++R +L RR E
Sbjct: 588 KRR---KLDRRAE 597
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 15/221 (6%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL ++ + ++IEQ + ++F R+ V+ LD + G+ A I
Sbjct: 742 ERYFRLDRETREVQRKIEQRTNTIARQFDRVCQVLDALHYLDGDKTT--EAGDRLARIYT 799
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E +L A LR + DL QLAA A+LV E R +S P V + + +
Sbjct: 800 ELDLVAAECLRQGVFDDLDVPQLAACLAALVYES---RSKDEPTSPRLPQGDVRHALERM 856
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 1136
L+ V+ +D F WASG + E++ + L GD R +++
Sbjct: 857 GSIWRDLSALERNMRVDFLRSMDLGFCWAAFRWASGASLSEVLYESDLAAGDFVRWVKQL 916
Query: 1137 IDLLAQIPKLPD----------VDQRLQKNAVDASNVMDRP 1167
IDL Q+ V + +++ + ++V+D P
Sbjct: 917 IDLTEQVADAAGPTPLRATARAVTEEIRRGVISYASVVDEP 957
>gi|357018344|ref|ZP_09080620.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
thermoresistibile ATCC 19527]
gi|356481814|gb|EHI14906.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
thermoresistibile ATCC 19527]
Length = 923
Score = 323 bits (829), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 220/613 (35%), Positives = 311/613 (50%), Gaps = 65/613 (10%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A DF +D FQR + EA G V+V APT +GKT++ E A +A R+ FYTTP
Sbjct: 11 EFAGQLDFELDDFQRRACEALENGHGVLVCAPTGAGKTVVGEFAVHLALAAGRKCFYTTP 70
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK + +G +GLLTGD +IN +A I++MTTE+LRNMLY +
Sbjct: 71 IKALSNQKHHDLVARYGPERIGLLTGDQSINGDAPIVVMTTEVLRNMLY------AGSPT 124
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DEVH+L+D RG VWEE+I++ P+EV+++ LSATV+NA+E GW+ + G
Sbjct: 125 LEGLAYVVMDEVHFLADRMRGAVWEEVILHLPEEVRLVSLSATVSNAEEFGGWMQTVRGD 184
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
T ++ RPVPL + L L D + + ++ L E R
Sbjct: 185 TTVVVDEHRPVPLWQHVMVGRRLFDLFDYRAAKSGGEPVVDRNLLRHIE---------HR 235
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
R + + D + R P+VI TL + +LPAI F+F+
Sbjct: 236 REAERLVDWQPRGRGRP------PRGRPGLYRPPTRPEVIATL---DAEGLLPAITFVFS 286
Query: 451 RRGCDAAV-QYLEDCNLLDECE----MSEV------ELALKRFRILYPDAVREPAIKGLL 499
R GCDAAV Q L L E ++E+ +L+ +L RE GLL
Sbjct: 287 RAGCDAAVKQCLRSPLRLTSAEERRQIAEIVDRRCADLSDADLIVLGYHEWRE----GLL 342
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART VL L K
Sbjct: 343 RGLAAHHAGMLPTFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLEKFDGEQH 402
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
LT E Q+ GRAGRRGID GH V++ P E L PL S F+ SY M
Sbjct: 403 KPLTPGEYTQLTGRAGRRGIDVEGHAVVLWHPDLDPVEIAGLASTRTFPLRSSFSPSYNM 462
Query: 620 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 679
+NL V ++ E+ A +L+EQSF Y ++ + + +
Sbjct: 463 TINL-----VQQMTPEA--------------AHRLLEQSFAQYQADRSVVGLVRGIERGR 503
Query: 680 KETDVLTSEISDDAID-RKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSA 738
+ + +E+ D + + K+RR E+ E A L+ ++ +R ++ R L R A
Sbjct: 504 RMLAEIAAELGDHSQNGGKNRR---ESPILEYARLRAKISERERAQSRASR---LHRRQA 557
Query: 739 LKDILKDFENGHL 751
+ L G +
Sbjct: 558 ANEALAKLRRGDI 570
>gi|357414385|ref|YP_004926121.1| DSH domain-containing protein [Streptomyces flavogriseus ATCC
33331]
gi|320011754|gb|ADW06604.1| DSH domain protein [Streptomyces flavogriseus ATCC 33331]
Length = 942
Score = 323 bits (829), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 202/522 (38%), Positives = 284/522 (54%), Gaps = 55/522 (10%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+Y+F +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 31 MYEFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALQQGRKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQKF + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 91 SNQKFADLVRRYGADKVGLLTGDNSVNADAPVVVMTTEVLRNMLY------AGSQALTGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G T++I
Sbjct: 145 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTQVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMN-----RKLSLNYLQLSTSEVKPYKDGGSR 389
S RPVPL + + L +E+ H R++S + ++L+ E + + R
Sbjct: 205 VSEHRPVPLWQHVMAGRRMYDLFEEETDHGGRGTGRREVSPDLVRLARMENQRGYNPRER 264
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
RR + + + + I P+VID L + +LPAI FIF
Sbjct: 265 RRGK-----------MVREADRERERRQRSRIWTPSRPEVID---RLDAEGLLPAITFIF 310
Query: 450 NRRGCDAAVQYLEDCNLL--DECEMSEV-ELALKRFRILYPDAVREPA----IKGLLKGV 502
+R GC AAVQ L DE + V E+ +R + P+ + ++GL +G+
Sbjct: 311 SRAGCQAAVQQCLQAGLRLNDEDKRQLVREIVEERTASIPPEDLHVLGYYEWLEGLERGI 370
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +
Sbjct: 371 AAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADI 430
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE--PLVSQFTASYGMV 620
T E Q+ GRAGRRGID GH V++ G + AG PL S F SY M
Sbjct: 431 TPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGMDPGALAGLAGTRTYPLRSSFRPSYNMA 488
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
+NL+ Q GR +R+L+E SF +
Sbjct: 489 VNLVQ-----------------QFGR--HRSRELLETSFAQF 511
>gi|182439666|ref|YP_001827385.1| ATP-dependent RNA helicase [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326780331|ref|ZP_08239596.1| DSH domain protein [Streptomyces griseus XylebKG-1]
gi|178468182|dbj|BAG22702.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326660664|gb|EGE45510.1| DSH domain protein [Streptomyces griseus XylebKG-1]
Length = 946
Score = 323 bits (829), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 203/531 (38%), Positives = 283/531 (53%), Gaps = 73/531 (13%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+Y+F +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 31 MYEFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALEQGRKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQKF + + +G + VGLLTGD+++N EA +++MTTE+LRNMLY + L +
Sbjct: 91 SNQKFADLVKRYGADKVGLLTGDNSVNSEAPVVVMTTEVLRNMLY------AGSPSLSGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 145 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMN-----RKLSLNYLQLSTSEVKPYKDGGSR 389
S RPVPL + + L +E H R+++ + ++L+ E + + R
Sbjct: 205 VSEHRPVPLWQHVMAGRKMYDLFEETTDHGGRGAGRREVNPDLVRLARQESQNVYNPRDR 264
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
RR + + + I P+VID L + +LPAI FIF
Sbjct: 265 RRGK-----------MVREADRERERRQRGRIWTPGRPEVID---RLDNEGLLPAITFIF 310
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----PA---------- 494
+R GC+AAVQ +C + + L + R L + V E P
Sbjct: 311 SRAGCEAAVQ---------QCLYAGLRLNDEDKRRLVREIVEERTASIPGEDLHVLGYYE 361
Query: 495 -IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 362 WLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVK 421
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE--PLVS 611
+T E Q+ GRAGRRGID GH V++ G + AG PL S
Sbjct: 422 WNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGMDPTGLAGLAGTRTYPLRS 479
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
F SY M +NL+ Q GR +R+L+E SF +
Sbjct: 480 SFRPSYNMAVNLVQ-----------------QFGR--HRSRELLETSFAQF 511
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 14/194 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL+ +++L KRIE + + F RI ++ E L N + G A + G
Sbjct: 723 ERYHRLQRDTRQLEKRIEGRTNTIARTFDRIVALLTELDYLRGNE--VTANGRRLARLYG 780
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG------IKVRLWKNNSSIYEPSTTVI 1070
E +L + LR + L PA+LAA ++LV E + +L + + ++
Sbjct: 781 ELDLLASECLREGVWEGLNPAELAACVSALVYEARQADDAVAPKLPSGPAKV--AMGEMV 838
Query: 1071 NVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDL 1129
+ LD F + E G P D F+ V WASG T E++ + + GD
Sbjct: 839 RIWGRLDALEEDFKINQTEGVGQREP---DLGFAWAVYMWASGRTLDEVLREAEMPAGDF 895
Query: 1130 ARLLRRTIDLLAQI 1143
R ++ ID+L Q+
Sbjct: 896 VRWCKQVIDVLGQV 909
>gi|88856568|ref|ZP_01131225.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
gi|88814222|gb|EAR24087.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
Length = 810
Score = 323 bits (829), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 191/475 (40%), Positives = 268/475 (56%), Gaps = 35/475 (7%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAV-ATVANQRRIFYTTPLKALSN 216
F +D+FQ S+ SV+V+APT +GKT+IAE A A N ++FYT P+KALSN
Sbjct: 31 FDLDEFQISACHVVEDDKSVLVAAPTGAGKTIIAEFAIYRAMQLNGPKVFYTAPMKALSN 90
Query: 217 QKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276
QKF E +G NVGLLTGD+ +N A+I++MTTE+LRNMLY + L ++
Sbjct: 91 QKFSELVSEYGPENVGLLTGDTNVNASARIVVMTTEVLRNMLYAKSDL------LKNLST 144
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
+V+DEVH+L D RG VWEE+II+ P +V+++ LSATV+NA+E W+ + G TE+I S
Sbjct: 145 VVMDEVHFLGDRFRGAVWEEVIIHLPDDVRMVSLSATVSNAEEFGDWLQAVRGDTEVIVS 204
Query: 337 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 396
RPVPL + + L+ L D G +++ +Q++ R R
Sbjct: 205 EERPVPLEQHVLVSSKLVDLFDSSGLAATNRVNPELVQMA-------------RFGGRSQ 251
Query: 397 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
+ N N +S + + + + + R+ V ++D S++++PAI+FIF+R GCD
Sbjct: 252 SVRNRKN--SSRYESRGGRPARTRMDRADVVAMLD------SKNLVPAIFFIFSRMGCDQ 303
Query: 457 AVQYL--EDCNLLDECEMSEV-ELALKRFRILYPDAVREPA----IKGLLKGVAAHHAGC 509
AV + L E E+ E+ R R L + + + GL +GVAAHHAG
Sbjct: 304 AVNQVLRAGVRLTTVQERDEIREIVEARCRTLLDEDLAVLGYWDWLNGLERGVAAHHAGM 363
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP +K +EELFQ+ LVK VFATETLA GINMPART VL L K R+ +T E Q
Sbjct: 364 LPAFKEVVEELFQKKLVKAVFATETLALGINMPARTVVLEKLEKFNGEARVPITPGEYTQ 423
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+ GRAGRRGID GH V+ + L PL S F +Y M +NL+
Sbjct: 424 LTGRAGRRGIDIEGHSVIQWVDGLDPQAVASLASRRTYPLNSSFKPTYNMAVNLI 478
>gi|448823701|ref|YP_007416866.1| putative helicase [Corynebacterium urealyticum DSM 7111]
gi|448277198|gb|AGE36622.1| putative helicase [Corynebacterium urealyticum DSM 7111]
Length = 911
Score = 323 bits (828), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 188/532 (35%), Positives = 281/532 (52%), Gaps = 74/532 (13%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V+E YDF +D+FQ + A G V+V APT +GKT++ E A FYT
Sbjct: 16 VEEFRKEYDFELDEFQLDAAAAIAEGRGVLVGAPTGAGKTIVGEFAVYMAFHGGGACFYT 75
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + ++G+ NVGLLTGD +N +A I++MTTE+LRNM+Y ++S
Sbjct: 76 TPIKALSNQKYHDLCASYGEENVGLLTGDVTLNPDAPIVVMTTEVLRNMIYADSDRLAS- 134
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +V+DEVH+L+D RG VWEE I+ V ++ LSATV+N +E GW+ +
Sbjct: 135 -----LTHVVMDEVHFLADRWRGPVWEETILNLDHSVTLVSLSATVSNVEEFGGWLRTLR 189
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
G+ ++I + +RPVPLT Y + ++ L + +H+
Sbjct: 190 GEMDVIVTDKRPVPLTQYMMVGSKIMRLFSKNAEHLA----------------------- 226
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
H + +++T+ G+ + N + P+ D + HL MLPAI+FI
Sbjct: 227 ----GEDHPGAINRSLLTAVGKAEAYGNQ-------RGPRREDVVRHLEQAKMLPAIYFI 275
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPD-AVREPA----------IKG 497
F+R GCD AVQ L L+ + E++ + A + I+ A EPA +
Sbjct: 276 FSRIGCDKAVQQL----LIRKVELTTPDEAREIGEIIDEGVAGLEPADLHMLGFRQWRRA 331
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
L++G AHHAG LP ++ +E+LF+RGL+KV FATETLA GINMPART VL ++K
Sbjct: 332 LMRGFGAHHAGMLPAFRHIVEKLFRRGLLKVCFATETLALGINMPARTVVLEKMTKFNGE 391
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
+LT + Q+ GRAGRRGID G+ V++ +P L A PL S F Y
Sbjct: 392 AHAELTPGQYTQLTGRAGRRGIDTVGNAVVLWSPQVDPYAVAALASARTYPLDSTFRPGY 451
Query: 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVML 669
M +NL+ A + EA +++E+SF Y ++ ++
Sbjct: 452 NMAVNLI-------------------ATKGWAEAHRILERSFAQYQANDTIV 484
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 67/169 (39%), Gaps = 20/169 (11%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIK---VRLWKNNSSIYE 1064
GE A I E++L +A LR + DL PA+LAA ++ V E + VR ++ E
Sbjct: 746 GEKLARIHHESDLLVAQCLRRGLWDDLDPAELAAAVSACVFENRRESTVRTQLPTDALEE 805
Query: 1065 PSTTVINVIN--VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-- 1120
+ V V DE R +E F+ V W +G +
Sbjct: 806 AVAHTLRVYKELVSDEERHRLTATREPQ---------LGFATAVHQWVAGAPLEYCLQAA 856
Query: 1121 ---DCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
L GD R R DLL QI K+ ++K+A A + M R
Sbjct: 857 EASGAVLTPGDFVRACGRVKDLLDQI-KMTGYSNDVRKSARKAVDAMQR 904
>gi|296165173|ref|ZP_06847721.1| ATP-dependent DNA helicase HelY [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899481|gb|EFG78939.1| ATP-dependent DNA helicase HelY [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 948
Score = 323 bits (828), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 207/539 (38%), Positives = 282/539 (52%), Gaps = 59/539 (10%)
Query: 143 GNEMIDVDELASI---YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATV 199
G+E+ ++ EL F +D FQ+ + A RG V+V APT +GKT++ E A +
Sbjct: 20 GDEVTELAELTRFTAELPFALDGFQQRACAALERGHGVLVCAPTGAGKTVVGEFAVHLAL 79
Query: 200 ANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLY 259
A + FYTTPLKALSNQK + +G + +GLLTGD ++N +A +++MTTE+LRNMLY
Sbjct: 80 AAAGKCFYTTPLKALSNQKHTDLTARYGRDRIGLLTGDMSVNADAPVVVMTTEVLRNMLY 139
Query: 260 QSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADE 319
+ L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LSATV+NA+E
Sbjct: 140 ------ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEE 193
Query: 320 LAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE 379
GWI + G T ++ RPVPL + L L D + + +
Sbjct: 194 FGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRSTEPGGQPGAG----REAR 249
Query: 380 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 439
V P +R R+ AD S+ R P D + L S
Sbjct: 250 VSPDL---ARHIAHRREADRMSDWQPRRGRGAGRGGPGRPRFYRP--PGRADVIATLDSE 304
Query: 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLL-----DECEMSEV------ELALKRFRILYPD 488
+LPAI F+F+R GCDAAVQ L + +++EV +LA +L
Sbjct: 305 GLLPAITFVFSRAGCDAAVQQCLRSPLRLTTEEERAQIAEVIDHRCGDLADADLAVLGYY 364
Query: 489 AVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
RE GLL+G+AAHHAG LP+++ +EELF GLVK VFATETLA GINMPART VL
Sbjct: 365 EWRE----GLLRGLAAHHAGMLPVFRHTVEELFTAGLVKAVFATETLALGINMPARTVVL 420
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE- 607
L K + LT E Q+ GRAGRRGID GH V++ P E E + AG+
Sbjct: 421 ERLVKFNGEQHVPLTPGEYTQLTGRAGRRGIDVEGHAVVLWNPAEETTEPSAV--AGLAS 478
Query: 608 ----PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F SY M +NL+ Q G E+A +L+EQSF Y
Sbjct: 479 TRTFPLRSSFAPSYNMTINLVQ-----------------QMG--PEQAHRLLEQSFAQY 518
>gi|68536017|ref|YP_250722.1| helicase [Corynebacterium jeikeium K411]
gi|68263616|emb|CAI37104.1| putative helicase [Corynebacterium jeikeium K411]
Length = 890
Score = 323 bits (828), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 198/545 (36%), Positives = 285/545 (52%), Gaps = 82/545 (15%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V+ + YDF +D FQ + EA RG V+V+APT +GKT++ E A A FYT
Sbjct: 8 VERFCAQYDFPLDDFQIQAAEAIDRGKGVLVAAPTGAGKTIVGEFAVFAAFHGDGTCFYT 67
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + E +G+ NVGLLTGD IN +A I++MTTE+LRNM+Y +
Sbjct: 68 TPIKALSNQKFHDLVERYGEANVGLLTGDVTINGDAPIVVMTTEVLRNMIY------ADS 121
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L + +V+DEVH+L+D SRG VWEE I+ V ++ LSATV+N +E GW+ +
Sbjct: 122 ERLETLTHVVMDEVHFLADRSRGPVWEEAILNLDPRVILVSLSATVSNVEEFGGWLSAVR 181
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
G TE+I + +RPVPLT + +LPL + +H+ ++N + + ++ G
Sbjct: 182 GDTEIIVTEKRPVPLTQFMMVGRQILPLFEGSEQHLG---AIN--RKVVAAAAKAEETGK 236
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
RR P+ D + H+ + MLPAI+FI
Sbjct: 237 RRG-----------------------------------PKRGDVVQHMATAGMLPAIYFI 261
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA--------IKGLLK 500
F+R GCDAAV+ L + +D SE E L+ D E + L +
Sbjct: 262 FSRVGCDAAVRALL-IDRVDYSSPSEREEILRTIDAGVADLTEEDLNVLGFRQWRRALSR 320
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G AAHHAG LP ++ +E+LF RGL+KV FATETLA GINMPAR+ VL L K
Sbjct: 321 GFAAHHAGMLPAFRHIVEDLFARGLLKVCFATETLALGINMPARSVVLEKLVKFNGETHA 380
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQT----PYEGAEECCKLLFAGVEPLVSQFTAS 616
LT + Q+ GRAGRRGID +G+ V++ + PY A+ + PL S F
Sbjct: 381 DLTPGQYTQLTGRAGRRGIDTKGNAVVLWSQGMDPYGVADLASTRTY----PLDSTFRPG 436
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELC 676
Y M +NL+ L+EA +L+ +SF Y + ++ + +++
Sbjct: 437 YNMAVNLIGTM-------------------GLDEAHRLLLRSFAQYQTNGAVVESAEQIE 477
Query: 677 KIQKE 681
K ++E
Sbjct: 478 KRRRE 482
Score = 47.4 bits (111), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 997 LDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLW 1056
L+ N+ I GE + I E++L +A LR I +L PA+LAAV ++ V E +
Sbjct: 713 LEGNSARITMEGERLSKIHHESDLLVAQCLRRGIWDELDPAELAAVASTCVFENRRDSGA 772
Query: 1057 KNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWR 1116
K++ EP I+ + + S+ +++H + + + F+ V W +G
Sbjct: 773 KDDGVPTEPLAEAISQTWRIYQELSTD---EQRHRLTVTREPELGFATAVHQWTAGAPLE 829
Query: 1117 EMMM-----DCALDDGDLARLLRRTIDLLAQI 1143
+ L GD R RR IDLL QI
Sbjct: 830 YCLRAAEASGATLTPGDFVRWCRRVIDLLDQI 861
>gi|453365973|dbj|GAC78307.1| putative helicase [Gordonia malaquae NBRC 108250]
Length = 919
Score = 323 bits (828), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 215/598 (35%), Positives = 308/598 (51%), Gaps = 79/598 (13%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
S DF ID FQR + ++ G V+V APT +GKT++ E A +A + FYTTP+
Sbjct: 15 FTSRLDFGIDDFQRRACQSLEEGRGVLVCAPTGAGKTIVGEFAVHLALAEGGKCFYTTPI 74
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + E G NVGLLTGD++IN A +++MTTE+LRNM+Y + + L
Sbjct: 75 KALSNQKYHDLVEVHGGENVGLLTGDNSINSSAPVVVMTTEVLRNMIY------ADSAAL 128
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ +V+DEVH+L+D RG VWEE+I+ + V+++ LSATV+NA+E WI + G T
Sbjct: 129 VGLSHVVMDEVHFLADRFRGAVWEEVILGLDQSVRVVSLSATVSNAEEFGDWITTVRGDT 188
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGK-------HMNRKLS--LNYLQLSTSEVKP 382
+I RPVPL + + L D +G+ +N +LS + + LS V
Sbjct: 189 AVIVDEHRPVPLHQHMLVGNRMFELFDRRGRGTEKGKRQVNSELSRYIKHRMLSPDAVGG 248
Query: 383 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
Y+D SR R R + N P++I +L + +L
Sbjct: 249 YEDRLSRERRRRGNRTGGVNR-----------------------PRMIA---NLEAEGLL 282
Query: 443 PAIWFIFNRRGCDAAV-QYLE-DCNLLDECEMSEV---------ELALKRFRILYPDAVR 491
PAI FIF+R GC+ A+ Q L D +LL+ E+++V ELA +L D R
Sbjct: 283 PAIDFIFSRAGCEGALAQCLRSDLHLLEPDEVAKVDAVVDAHLAELAPGDSDVLGVDDWR 342
Query: 492 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
L +G AAHHAG LP ++ +EELF GL+KVVFATETLA GINMPAR+ VL L
Sbjct: 343 ----WALRRGFAAHHAGMLPTFRQAVEELFSLGLIKVVFATETLALGINMPARSVVLERL 398
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
K + LT E Q+ GRAGRRGID GH V++ TP E L A PL S
Sbjct: 399 VKYNGESHVDLTPGEYTQLTGRAGRRGIDVEGHAVVIWTPEVQPERVAGLAGARTFPLRS 458
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 671
F Y M +NL+ D + ++ +R L+ QSF + ++
Sbjct: 459 SFAPEYNMAMNLI------------DRL-------GVDGSRALLRQSFAQFQTDRSVVGQ 499
Query: 672 KDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRR 729
+L + L +EI A R + + E L+E+++ ++R + +RR
Sbjct: 500 ARQLDNADRTLRKLNNEIDAAA----GRSGIDPERFTEYVGLREDIRRKERAQKFVRR 553
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 18/151 (11%)
Query: 1004 IFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV------SEGIKVRLWK 1057
+ P G I E++L +A +R + L P+ LAAV +S++ S G V
Sbjct: 745 VTPTGAVLRRIYSESDLLVAECIRAGVWNGLSPSDLAAVVSSVLFVSRRESYGAGVDSMP 804
Query: 1058 NNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWRE 1117
N ++ + T I V + +Q++HGV D+ F V AWASG + RE
Sbjct: 805 GNPAMRDALTGTIQVWEATN-------RVQDRHGVVQTREPDTGFCAAVSAWASGRSLRE 857
Query: 1118 MMMDCA-----LDDGDLARLLRRTIDLLAQI 1143
+ L GD R R+ IDLL QI
Sbjct: 858 ALGAAGSQGNLLSPGDFVRWNRQVIDLLEQI 888
>gi|108799443|ref|YP_639640.1| DEAD/DEAH box helicase [Mycobacterium sp. MCS]
gi|119868556|ref|YP_938508.1| DEAD/DEAH box helicase [Mycobacterium sp. KMS]
gi|108769862|gb|ABG08584.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
gi|119694645|gb|ABL91718.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS]
Length = 918
Score = 323 bits (828), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 220/611 (36%), Positives = 311/611 (50%), Gaps = 68/611 (11%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D FQ + EA G V+V APT +GKT++ E A +A + FYTTP+
Sbjct: 12 FAAGMPFALDPFQIRACEALESGHGVLVCAPTGAGKTVVGEFAVHLALAAGGKCFYTTPI 71
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK + +G +GLLTGD +IN +A I++MTTE+LRNMLY + L
Sbjct: 72 KALSNQKHADLVRRYGPEKIGLLTGDQSINGDADIVVMTTEVLRNMLY------ADSPAL 125
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ +V+DEVH+L+D RG VWEE+I++ P EV+++ LSATV+NA+E GWI + G T
Sbjct: 126 HGLSHVVMDEVHFLADRMRGAVWEEVILHLPDEVRLVSLSATVSNAEEFGGWIQTVRGDT 185
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
++ RPVPL + L L D + R S L + ++ + RR
Sbjct: 186 TVVVDEHRPVPLWQHVLVGKRLFDLFDYRAHSPAR--SGRELVVDPELLRHI----AHRR 239
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
+ + AD G+ + + S I R P D + L +LPAI F+F+R
Sbjct: 240 EADRLADWQPR------GRGRSAHRSRPTIYRP--PARPDVIAALDREGLLPAITFVFSR 291
Query: 452 RGCDAAV-QYLEDCNLLDECE----MSEV------ELALKRFRILYPDAVREPAIKGLLK 500
GCDAAV Q L L E ++EV +LA +L RE GLL+
Sbjct: 292 AGCDAAVKQCLRSPLRLTTNEERQRIAEVIDRRCADLAEADLIVLDYHEWRE----GLLR 347
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+AAHHAG LP+++ +EELF GLVK VFATETLA GINMPART VL L K +
Sbjct: 348 GLAAHHAGMLPVFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLEKLVKFNGEQHM 407
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
LT E Q+ GRAGRRGID GH V++ TP E L PL S F SY M
Sbjct: 408 PLTPGEYTQLTGRAGRRGIDVEGHAVVLWTPDVEPVEVAGLASTRTFPLRSSFAPSYNMT 467
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
+NL+ Q G + +AR+L+EQSF Y ++ + + + ++
Sbjct: 468 INLVH-----------------QMGPA--QARQLLEQSFAQYQADRSVVGLRRGVERGER 508
Query: 681 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALK 740
D + +E+ +A + L+ ++ +R ++ R L+R +A
Sbjct: 509 MLDEIAAELGG-----------RDAPILDYVRLRAKISERERAQS---RSSRLQRRAAAN 554
Query: 741 DILKDFENGHL 751
D L G +
Sbjct: 555 DALSALRRGDI 565
>gi|336117414|ref|YP_004572182.1| ATP-dependent helicase [Microlunatus phosphovorus NM-1]
gi|334685194|dbj|BAK34779.1| putative ATP-dependent helicase [Microlunatus phosphovorus NM-1]
Length = 949
Score = 323 bits (828), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 199/531 (37%), Positives = 280/531 (52%), Gaps = 48/531 (9%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A Y F D +QR + GS V+V+APT +GKT++ E A + R+ FYTTP+
Sbjct: 25 FADGYGFGFDDYQREACAHLESGSGVLVAAPTGAGKTIVGEFAVWLALQRGRKAFYTTPI 84
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + G NVGLLTGDS IN EA +++MTTE+LRNM+Y + S L
Sbjct: 85 KALSNQKYADLVRRHGAENVGLLTGDSTINSEAPVVVMTTEVLRNMIY------AGSSTL 138
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
++ +V+DEVHYL+D RG VWEE+II +Q++ LSATV+NA+E W+ ++ G+
Sbjct: 139 DNLGFVVMDEVHYLADRFRGAVWEEVIIGLAASIQLVALSATVSNAEEFGDWLSEVRGEM 198
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKG-------KHMNRKLSLNYLQLSTSEVKPYK 384
++ S RRPVPL + L L ++ +++ +++S E + +
Sbjct: 199 AVVVSERRPVPLFQHVLVGKRLYDLFADEAPTAVALPSQSTAEVNPALVKVSKEEARHVR 258
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI------DTLWHLRS 438
D R R + + G++ + + + RS P+ + D + L +
Sbjct: 259 DDS---RRPRGRSGKGKRAVAYGSGKYGGAAHRSHTDARSGRPRSLAVASRPDLVTALDA 315
Query: 439 RDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEV-ELALKRFRILYPDAVR---- 491
+LPAI FIF+R+GCDAAV L L + E +E+ E+A + L +R
Sbjct: 316 EGLLPAIVFIFSRQGCDAAVGQLLASGIRLTNAEERAELAEIADRHVAGLTAADLRALDY 375
Query: 492 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
++ L +GVAAHHAG LP +K +EE F +GLVK VFATETLA GINMPAR+ VL L
Sbjct: 376 SRFMEALQRGVAAHHAGMLPAFKEAVEEAFVKGLVKAVFATETLALGINMPARSVVLEKL 435
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
K +T E Q+ GRAGRRGID GH V+V P L PL S
Sbjct: 436 VKYNGETHADITPGEYTQLTGRAGRRGIDVEGHAVVVWQPGLDPRAVAGLASRRTYPLKS 495
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
F +Y M +NL+ GR E AR L+EQSF +
Sbjct: 496 SFAPTYNMAVNLVGA-----------------VGR--ERARSLLEQSFAQF 527
>gi|262202396|ref|YP_003273604.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
gi|262085743|gb|ACY21711.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
43247]
Length = 932
Score = 323 bits (828), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 205/526 (38%), Positives = 278/526 (52%), Gaps = 35/526 (6%)
Query: 146 MIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205
M +DE + DFR+D FQ + A G V+V APT +GKT++ E A +A +
Sbjct: 1 MSRLDEFTARLDFRLDDFQIRACTALEAGHGVLVCAPTGAGKTIVGEFAVHLALAGGTKC 60
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
FYTTP+KALSNQK+ + G +VGLLTGDS+IN +A +++MTTE++RNM+Y
Sbjct: 61 FYTTPIKALSNQKYADLAAVHGPESVGLLTGDSSINPDAPVVVMTTEVVRNMIY------ 114
Query: 266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325
++ L + +V+DEVH+L+D RG VWEE+I++ V+++ LSATV+NA+E WI
Sbjct: 115 ANSRALNGLSHVVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLSATVSNAEEFGDWIQ 174
Query: 326 QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK----HMNRKLS--LNYLQLSTSE 379
+ G T +I RPVPL+ + + L L G +N +L + + L E
Sbjct: 175 TVRGDTSVIVDEHRPVPLSQHMLVGSRLFDLFAPGGPDDRPRVNPELKSFIRHRMLFADE 234
Query: 380 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 439
P +D R + + A+ R + +D
Sbjct: 235 ESPARD----RSGGDGRHRGQRGGRGRAHSPRTRQRRGSGALSRPNMVARLD------RE 284
Query: 440 DMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV-ELALKRFRILYPDAVREPAI- 495
+LPAI FIF+R GCD A+ Q L +LLD E + V E+ + L P +
Sbjct: 285 GLLPAIGFIFSRAGCDGALAQCLRSGLSLLDPPEAALVDEVVDRHLSELSPSDAEVLGVD 344
Query: 496 ---KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
GL +G AAHHAG LP ++ +EELF RGLV++VFATETLA GINMPAR+ VL L
Sbjct: 345 EWRAGLRRGFAAHHAGLLPTFRHAVEELFVRGLVRMVFATETLALGINMPARSVVLERLV 404
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
K + LT E Q+ GRAGRRGID GH V+V TP EE L A PL S
Sbjct: 405 KYNGESHVDLTPGEFTQLTGRAGRRGIDVEGHAVVVWTPEVAPEEVAGLAGARTFPLRSS 464
Query: 613 FTASYGMVLNL---LAGAKVMHLSNESDDMKALQAGRS-LEEARKL 654
F Y M +NL L A L N S QA RS + +ARKL
Sbjct: 465 FAPEYNMAVNLIGRLGMAGSRELLNRS--FAQFQADRSVVGQARKL 508
Score = 43.9 bits (102), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 17/154 (11%)
Query: 1000 NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIK-----VR 1054
+T + G I E++L + LR + L P +LAAV ASLV E + V
Sbjct: 755 DTVTVTDAGRLLGRIYSESDLVVTECLRAGVWEGLAPPELAAVVASLVYESRRDSYRGVD 814
Query: 1055 LWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLT 1114
N+ + V + E++ +H V D+ FS V WASG +
Sbjct: 815 AMPGNAGVRAAMAATAAVW-------TEVTEVERRHQVTPTREPDTGFSVAVSLWASGRS 867
Query: 1115 WREMMMDCA-----LDDGDLARLLRRTIDLLAQI 1143
E + L GD R R+ +DLL QI
Sbjct: 868 LTEALAAAGERGQLLSPGDFVRWNRQVVDLLEQI 901
>gi|302308119|ref|NP_984927.2| AER067Cp [Ashbya gossypii ATCC 10895]
gi|299789304|gb|AAS52751.2| AER067Cp [Ashbya gossypii ATCC 10895]
gi|374108150|gb|AEY97057.1| FAER067Cp [Ashbya gossypii FDAG1]
Length = 1282
Score = 323 bits (827), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 191/496 (38%), Positives = 283/496 (57%), Gaps = 28/496 (5%)
Query: 148 DVDEL----ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
++DEL A + F +D FQ+ +I +G SV V+A TS+GKT++AE A + N
Sbjct: 323 NLDELVPNPARTWPFELDIFQKQAIYHLEQGDSVFVAAHTSAGKTVVAEYAIAMSTRNMT 382
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ YT+P+KALSNQKFR+F+E F D +VGL+TGD IN +A LIMTTEILR+MLY+
Sbjct: 383 KTIYTSPIKALSNQKFRDFKEDFDDVSVGLITGDVQINADANCLIMTTEILRSMLYKGAD 442
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
++ DV+ ++ DEVHY++D RG VWEE+II P V+ I LSATV N E A W
Sbjct: 443 LIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPSHVKFILLSATVPNTFEFADW 496
Query: 324 IGQI-HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTS-EVK 381
IG+ H ++++ +RPVPL K ++P+++E + + + S + L+ S
Sbjct: 497 IGRTKHKNIYVLSTPKRPVPLEINVWAKDTMIPVINENREFLAKNFSKHADLLANSGSSN 556
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVT-------SFGQHQLSKNSINAIRRSQVPQVIDTLW 434
K S R N +N ++T + G ++ S + + P++++
Sbjct: 557 TAKKTASTRGNKAPTRGDKANKVITKGSRGVGAKGSNRSSFFKRDGPNKQTWPRLVN--- 613
Query: 435 HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV----ELALKRFRILYPDAV 490
+LRSRD+LP + F+F+++ C+ +LE + E S+V E ++ R + D
Sbjct: 614 YLRSRDLLPVVIFVFSKKRCEDYAGFLEGTDFSTAKERSQVYMFIEKSIARLKKEDRDVP 673
Query: 491 REPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
+ ++ LL +G+A HH G LPI K IE LF +G VKV+FATET A G+N+P RT V S
Sbjct: 674 QIQQVRSLLERGIAIHHGGLLPIIKELIEMLFAKGFVKVLFATETFAMGLNLPTRTVVFS 733
Query: 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP- 608
+ K +G L+ E QMAGRAGRRG D G V+++ + K + GV
Sbjct: 734 EIEKHDGNGLRYLSPGEFTQMAGRAGRRGKDKVGTVIVMSYNHPLDVTSFKDVTLGVPTR 793
Query: 609 LVSQFTASYGMVLNLL 624
L SQF +Y M+LNLL
Sbjct: 794 LKSQFRLTYNMILNLL 809
>gi|260578709|ref|ZP_05846617.1| DEAD/DEAH box helicase [Corynebacterium jeikeium ATCC 43734]
gi|258603206|gb|EEW16475.1| DEAD/DEAH box helicase [Corynebacterium jeikeium ATCC 43734]
Length = 890
Score = 323 bits (827), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 198/545 (36%), Positives = 285/545 (52%), Gaps = 82/545 (15%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V+ + YDF +D FQ + EA RG V+V+APT +GKT++ E A A FYT
Sbjct: 8 VERFCAQYDFPLDDFQIQAAEAIDRGKGVLVAAPTGAGKTIVGEFAVFAAFHGDGTCFYT 67
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + E +G+ NVGLLTGD IN +A I++MTTE+LRNM+Y +
Sbjct: 68 TPIKALSNQKFHDLVERYGEANVGLLTGDVTINGDAPIVVMTTEVLRNMIY------ADS 121
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L + +V+DEVH+L+D SRG VWEE I+ V ++ LSATV+N +E GW+ +
Sbjct: 122 ERLETLTHVVMDEVHFLADRSRGPVWEEAILNLDPRVILVSLSATVSNVEEFGGWLSAVR 181
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
G TE+I + +RPVPLT + +LPL + +H+ ++N + + ++ G
Sbjct: 182 GDTEIIVTEKRPVPLTQFMMVGRQILPLFEGSEQHLG---AIN--RKVVAAAAKAEETGK 236
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
RR P+ D + H+ + MLPAI+FI
Sbjct: 237 RRG-----------------------------------PKRGDVVQHMATAGMLPAIYFI 261
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA--------IKGLLK 500
F+R GCDAAV+ L + +D SE E L+ D E + L +
Sbjct: 262 FSRVGCDAAVRALL-IDRVDYSSPSEREEILRTIDAGVADLTEEDLNVLGFRQWRRALSR 320
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G AAHHAG LP ++ +E+LF RGL+KV FATETLA GINMPAR+ VL L K
Sbjct: 321 GFAAHHAGMLPAFRHIVEDLFARGLLKVCFATETLALGINMPARSVVLEKLVKFNGETHA 380
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQT----PYEGAEECCKLLFAGVEPLVSQFTAS 616
LT + Q+ GRAGRRGID +G+ V++ + PY A+ + PL S F
Sbjct: 381 DLTPGQYTQLTGRAGRRGIDTKGNAVVLWSQGMDPYGVADLASTRTY----PLDSTFRPG 436
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELC 676
Y M +NL+ L+EA +L+ +SF Y + ++ + +++
Sbjct: 437 YNMAVNLIGTM-------------------GLDEAHRLLLRSFAQYQTNGAVVESAEQIE 477
Query: 677 KIQKE 681
K ++E
Sbjct: 478 KRRRE 482
Score = 47.0 bits (110), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 10/168 (5%)
Query: 983 EFLRISNVIHETRALDI--NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 1040
+F RI ++ E +++ N+ I GE + I E++L +A LR I +L PA+LA
Sbjct: 697 QFNRILALLAELDYVELVGNSARITMEGERLSKIHHESDLLVAQCLRRGIWDELDPAELA 756
Query: 1041 AVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 1100
AV ++ V E + K++ EP I+ + + S+ +++H + + +
Sbjct: 757 AVASTCVFENRRDSGAKDDGVPTEPLAEAISQTWRIYQELSTD---EQRHRLTVTREPEL 813
Query: 1101 QFSGMVEAWASGLTWREMMM-----DCALDDGDLARLLRRTIDLLAQI 1143
F+ V W +G + L GD R RR IDLL QI
Sbjct: 814 GFATAVHQWTAGAPLEYCLRAAEASGATLTPGDFVRWCRRVIDLLDQI 861
>gi|376290436|ref|YP_005162683.1| putative helicase [Corynebacterium diphtheriae C7 (beta)]
gi|372103832|gb|AEX67429.1| putative helicase [Corynebacterium diphtheriae C7 (beta)]
Length = 930
Score = 323 bits (827), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 219/608 (36%), Positives = 318/608 (52%), Gaps = 66/608 (10%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D+FQ +A G V+V APT +GKT++ E A ++ Q + FYTTP+
Sbjct: 14 FAARQKFPLDEFQIRGCQAVESGRGVLVCAPTGAGKTIVGEFAVSLAISQQTKCFYTTPI 73
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKF + + G++ VGLLTGD +INR+A I++MT E+LRNM+Y + L
Sbjct: 74 KALSNQKFHDLVKAHGEDKVGLLTGDVSINRDADIVVMTAEVLRNMIY------ADSEAL 127
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ +V+DE+H+LSD SRG VWEE I+ V +I LSATV+N++E W+ + G T
Sbjct: 128 DRLSHVVMDEIHFLSDSSRGAVWEEAILGLDASVNVIGLSATVSNSEEFGRWLNTVRGDT 187
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL--SLNYLQLSTSEVKPY---- 383
E+I S RPVPL + + PL E G +N +L + L+ +T++ Y
Sbjct: 188 EIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLVEHIERLEGTTTDGTEYGRAQ 246
Query: 384 -KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
K GG R R+ M+S+N + H+ S A+ R D L L+ +DML
Sbjct: 247 LKAGGFRNRSR----AMDSDNRASRRSPHRRSDKH-RALSRP------DVLHILQEQDML 295
Query: 443 PAIWFIFNRRGCDAAVQYLEDCNLL-----DECEMSEVELAL------KRFRILYPDAVR 491
PAI FIF+R GCDAA+ +L+ + E+S++ A + R+L R
Sbjct: 296 PAITFIFSRVGCDAALHQCMRSSLVLTTQEESEEISDIITAGVSGIPEEDLRLLDYRRWR 355
Query: 492 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
+ L++G AAHHAG LP ++ +E+LF +GLV+ VFATETLA GINMPART VL L
Sbjct: 356 Q----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFATETLALGINMPARTVVLEKL 411
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
K G LT + Q+ GRAGRRGID G+ V+ P + L PLVS
Sbjct: 412 VKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWAPAMDPGQVAGLASTRTYPLVS 471
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 671
F Y M +NLL K + E A +L+E+SF + ++
Sbjct: 472 TFAPGYNMSVNLL---------------KTI----GFEPAHRLLEKSFAQFQADGSVVDD 512
Query: 672 KDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEMANLQEELKAEKRFRTEL--- 727
+ +++ D LT ++ A D + + ++ E ++ EL E+R L
Sbjct: 513 IKAIESLEESVDQLTKQLH-AAFDSHDQDGAGDVDSFLEYIRIRRELTEEERKHKRLSIE 571
Query: 728 RRRMELKR 735
+R ME R
Sbjct: 572 QRDMETTR 579
Score = 45.8 bits (107), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 100/232 (43%), Gaps = 14/232 (6%)
Query: 938 RTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL 997
R+ ++K D + E+ ++ + K E + G + F RI N++ E +
Sbjct: 694 RSHPAHHWRKREDLARVGEQLVREQRMLEAAQRKVNEATDTLG-RTFDRIINLLAEYDYV 752
Query: 998 DIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRL 1055
+ + VI GE I E++L +A L+ I DL PA+LA V + E +
Sbjct: 753 EFHDGVPVITEEGENLCQIHNESDLLVAQCLKRGIWDDLDPAELAGVVSMCTFENRRETR 812
Query: 1056 WKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTW 1115
+ +++ E + + N + + +E S + ++ + I + F+ + WA+G
Sbjct: 813 GEPDAATEEMAKAMNNTVRIWEELSSD----ERRYRLPITRYPEGGFALAMHQWAAGAPL 868
Query: 1116 REMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQRLQKNAVDA 1160
+ + L GD R R+ +DLL Q+ + +R + A+DA
Sbjct: 869 GYCIAAASESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRRAARKAIDA 920
>gi|345013945|ref|YP_004816299.1| DSH domain-containing protein [Streptomyces violaceusniger Tu 4113]
gi|344040294|gb|AEM86019.1| DSH domain protein [Streptomyces violaceusniger Tu 4113]
Length = 940
Score = 323 bits (827), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 199/520 (38%), Positives = 279/520 (53%), Gaps = 51/520 (9%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 31 MYDFELDPFQIEACKALESGKGVLVAAPTGSGKTIVGEFAVHLALTQGRKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 91 SNQKYADLVKRYGADKVGLLTGDNSVNSDAPVVVMTTEVLRNMLY------AGSQALLGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 145 GHVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKG-----KHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
S RPVPL + + L +EK + R+++ + ++L+ E G +
Sbjct: 205 VSEHRPVPLWQHVLAGRRMYDLFEEKSGQDGDQSGRREVNPDLVRLARMESSRPTFGRDK 264
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
RR N + + ++ I R++V +D S +LPAI FIF
Sbjct: 265 RR--------GRNMREADRERERRQRSRIWTPGRAEVIDRLD------SEGLLPAITFIF 310
Query: 450 NRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGV 502
+R GC AAVQ L DE + V ++ PD ++GL +G+
Sbjct: 311 SRAGCQAAVQQCLHAGLRLNDEAARARVRALVEERTAGIPDEDLHVLGYFEWLEGLERGI 370
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +
Sbjct: 371 AAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADI 430
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
T E Q+ GRAGRRGID GH V++ L PL S F SY M +N
Sbjct: 431 TPGEYTQLTGRAGRRGIDVEGHAVVLWQRTMDPAALAGLAGTRTYPLRSSFRPSYNMAVN 490
Query: 623 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
L++ Q GR +R+L+E SF +
Sbjct: 491 LVS-----------------QFGR--HRSRELLETSFAQF 511
Score = 48.9 bits (115), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 104/239 (43%), Gaps = 17/239 (7%)
Query: 915 YHDAVENYKEQR-----TKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 969
+HD KE+ T++ARL+ I R D ++ E + +RL +++L
Sbjct: 678 HHDVGRRRKERSAAADDTEIARLRAAI-RAHPCHGCSDREDHARWGE-RYQRLLRDTRQL 735
Query: 970 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 1029
+RIE + + F RI +++ E L + + +G+ A + GE +L + LR
Sbjct: 736 ERRIEGRTNTIARTFDRICSLLSELGYLRDDE--VTDVGKRLARLYGELDLLASECLREG 793
Query: 1030 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEK 1089
+ L PA+LAA ++LV E R + P + + + L+E+
Sbjct: 794 VWEGLPPAELAACASALVYE---ARTADDALPPKLPPGRAKDALGEMVRIWGRLDALEEE 850
Query: 1090 HGVEIPCCL-----DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 1143
H + + D F+ WASG E++ + + GD R ++ ID+L QI
Sbjct: 851 HKINQAEGVGQREPDLGFAWAAYRWASGHGLDEVLREIDMPAGDFVRWTKQLIDVLGQI 909
>gi|291450457|ref|ZP_06589847.1| helicase [Streptomyces albus J1074]
gi|421740794|ref|ZP_16179025.1| superfamily II RNA helicase [Streptomyces sp. SM8]
gi|291353406|gb|EFE80308.1| helicase [Streptomyces albus J1074]
gi|406690789|gb|EKC94579.1| superfamily II RNA helicase [Streptomyces sp. SM8]
Length = 935
Score = 323 bits (827), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 210/608 (34%), Positives = 308/608 (50%), Gaps = 64/608 (10%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + + G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 31 MYDFGLDPFQLDACRSLEEGKGVLVAAPTGSGKTIVGEFAVHLALGQSKKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 91 SNQKYADLAKRYGADKVGLLTGDNSVNPDAPVVVMTTEVLRNMLY------AGSQTLTGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P V ++ LSATV+NA+E W+ + G T++I
Sbjct: 145 GYVVMDEVHYLSDRFRGAVWEEVIIHLPPSVTLVSLSATVSNAEEFGDWLDTVRGDTDVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
S RPVPL + + L +E G+ + ++ + L+++ E RRR
Sbjct: 205 VSEHRPVPLFQHVLAGRRMYDLFEE-GEGAKKAVNPDLLRMARLESSRPTGPKDRRRGRN 263
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
S+ P+VI+ L + ++LPAI FIF+R GC
Sbjct: 264 MREADRERERRQRSRTWTPSR-----------PEVIE---RLDAENLLPAITFIFSRAGC 309
Query: 455 DAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGVAAHHA 507
+AAVQ L D+ S V ++ PD ++GL +G+AAHHA
Sbjct: 310 EAAVQQCLYAGLRLNDDAARSAVREIVEERTAAIPDEDLHVLGYFEWLEGLERGIAAHHA 369
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
G LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T E
Sbjct: 370 GMLPTFKEVVEELFLRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITPGEY 429
Query: 568 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 627
Q+ GRAGRRGID GH V++ E L PL S F SY M +NL+
Sbjct: 430 TQLTGRAGRRGIDVEGHAVVLWQRAMNPEHLAGLAGTRTYPLRSSFKPSYNMAVNLVH-- 487
Query: 628 KVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTS 687
Q GR +R+L+E SF + ++ ++ + ++ + +
Sbjct: 488 ---------------QFGR--HRSRELLETSFAQFQADRSVVGISRQVQRNEEGLEGYAA 530
Query: 688 EISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFE 747
++ D ++E L+ ELK + TEL R+ +R + L+
Sbjct: 531 SMTCHLGD-----------FEEYGRLRRELKDRE---TELARQGAGQRRAEAAGALEKLR 576
Query: 748 NG---HLP 752
G H+P
Sbjct: 577 PGDIIHVP 584
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 15/213 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RLK +++L +RIE + + F RI N++ E L N + G + + G
Sbjct: 717 ERYHRLKRDTRQLERRIEGRTNTIARTFDRIVNLLTELGYLRGNE--VTEDGRRLSRLYG 774
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E +L + LR + L PA+LAA ++LV E R + PS + + +
Sbjct: 775 ELDLLASECLREGVWEGLGPAELAACVSALVFE---ARQADDAVVPKLPSGAAKSALGEM 831
Query: 1077 DEHRSSFLELQEKHGVEIPCCL-----DSQFSGMVEAWASGLTWREMMMDCALDDGDLAR 1131
L+E+HG+ + D F+ WASG ++ + + GD R
Sbjct: 832 VRIWGRLDALEEQHGISQTEGVGQREPDLGFAWAAYMWASGKGLDAVLREAEMPAGDFVR 891
Query: 1132 LLRRTIDLLAQI----PKLPDVDQRLQKNAVDA 1160
++ ID+L QI P+ V R + AVDA
Sbjct: 892 WCKQVIDVLGQIAAAAPEGSTV-ARSARKAVDA 923
>gi|219683807|ref|YP_002470190.1| helicase [Bifidobacterium animalis subsp. lactis AD011]
gi|384191089|ref|YP_005576837.1| HelY [Bifidobacterium animalis subsp. lactis BB-12]
gi|384192234|ref|YP_005577981.1| Hydrolase acting on acid anhydrides in phosphorous-containing
anhydrides [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
gi|219621457|gb|ACL29614.1| probable helicase [Bifidobacterium animalis subsp. lactis AD011]
gi|289178581|gb|ADC85827.1| HelY [Bifidobacterium animalis subsp. lactis BB-12]
gi|340364971|gb|AEK30262.1| Hydrolase acting on acid anhydrides in phosphorous-containing
anhydrides [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
Length = 875
Score = 323 bits (827), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 234/674 (34%), Positives = 344/674 (51%), Gaps = 96/674 (14%)
Query: 106 QSDDEFEVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQR 165
+S DE E+S PA +R FK R +++ + F + M F +D FQ+
Sbjct: 24 ESTDERELS----PAERYRA-FKESR-KRMQSVAARFADRM----------PFELDAFQQ 67
Query: 166 SSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI--FYTTPLKALSNQKFREFR 223
+ EA GS+V+V+APT +GKT++A+ A +A QR + FYTTP+KALSNQK+ +
Sbjct: 68 DANEALEAGSNVLVAAPTGAGKTVVADFAIY--LAQQRNVKAFYTTPIKALSNQKYHDLV 125
Query: 224 ETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283
+ +G + VGLLTGD++IN EA I++MTTE+LRNMLY+ +++ + ++LDEVH
Sbjct: 126 DMYGADKVGLLTGDTSINSEADIVVMTTEVLRNMLYEHSTTLNA------LGYVILDEVH 179
Query: 284 YLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPL 343
YL+D RG +WEE+II+ P+ V+II LSATV+N ++ A WI + G T+L+ S RPVPL
Sbjct: 180 YLADRFRGPIWEEVIIHLPQSVRIIGLSATVSNVEDFADWIESVRGDTKLVVSEHRPVPL 239
Query: 344 TWYF------STKTALLPL-----LDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
Y T+ L L + E+ MN +L +L E + + + R+
Sbjct: 240 DQYVLLQKDPRTEPELFDLYCRDDMGEQTVKMNARLMNRLDELDRMEARRAR-ADTHGRS 298
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R+ V ++Q + + V+D L L MLPAI+F+F+R
Sbjct: 299 ERRQDRGGKRKFVRKPERYQPRRWA-----------VVDELNFL---GMLPAIYFVFSRN 344
Query: 453 GCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVREPAIKGLLK 500
GCD AV+ + L DE EM E +L + + L+ R L +
Sbjct: 345 GCDEAVEQCLNAGLRLTTDEEALHIRKIVDEMIEGQLTREDLKTLHFSQFR----YALEE 400
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G AAHHAG + ++K +E LF+ GL+K VFATETLA GINMPAR+ V+ L K +G +
Sbjct: 401 GFAAHHAGMIALFKQIVERLFEEGLIKCVFATETLALGINMPARSVVVEKLEKYNGTGIV 460
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
LT E Q+ GRAGRRGID G+ ++V E L V PL S F A++ M
Sbjct: 461 PLTPGEYTQLTGRAGRRGIDTIGNAIVVDHRDFKPETAVALSSKRVYPLHSSFKATFNMA 520
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
+NLL N SD E AR ++ SF + + + + K++K
Sbjct: 521 VNLL---------NSSD----------YETARDTLDHSFAQWEANESAWDLEARIDKLRK 561
Query: 681 ETDVLTSEISDDAIDR----KSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRF 736
+ +DA D + R LS+ E L+ E+ F++ R +R
Sbjct: 562 AIAGYEEAMGNDAGDMVELLRIRMKLSDLQKNERRRLKHEV-----FKSNEERSRAFRRL 616
Query: 737 SALKDILKDFENGH 750
A LK+ E H
Sbjct: 617 DAQIAQLKEQEANH 630
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 17/189 (8%)
Query: 967 KRLTKRIEQIEPSGWKEFLRISN---VIHETRALDINTQVIFPLGETAAAIR---GENEL 1020
+RL R E S ++F RI + V+ D N + + L E +R E +L
Sbjct: 656 ERLEYRYESRTSSVARQFDRICHSLEVLGYLETADENGHIDYRLTEYGQLLRRLYTERDL 715
Query: 1021 WLAMVLRNKILLDLKPAQLAAVCASLV-----SEGIKVRLWKNNSSIYEPSTTVINVINV 1075
LA + + I DL +LAAV +SL+ EG + R + P V+ N
Sbjct: 716 VLAQAITHGIFDDLNAPELAAVMSSLLYEPRRGEGGEPRRYPGG-----PRGRVMQAANA 770
Query: 1076 LDEHRSSFLELQEKHGVE-IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLR 1134
L + + L E +G+E LD ++ WA G + E++ + GD R +
Sbjct: 771 LRDMDGQIIALCEANGLENYLQPLDFGIVDLMYNWAYGDSLSEVLEHSDMTGGDFVRTAK 830
Query: 1135 RTIDLLAQI 1143
R D+L QI
Sbjct: 831 RIADVLQQI 839
>gi|172040727|ref|YP_001800441.1| helicase [Corynebacterium urealyticum DSM 7109]
gi|171852031|emb|CAQ05007.1| putative helicase [Corynebacterium urealyticum DSM 7109]
Length = 911
Score = 323 bits (827), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 188/532 (35%), Positives = 280/532 (52%), Gaps = 74/532 (13%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V+E YDF +D+FQ + A G V+V APT +GKT++ E A FYT
Sbjct: 16 VEEFRKEYDFELDEFQLDAAAAIAEGRGVLVGAPTGAGKTIVGEFAVYMAFHGGGACFYT 75
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + ++G+ NVGLLTGD +N +A I++MTTE+LRNM+Y ++S
Sbjct: 76 TPIKALSNQKYHDLCASYGEENVGLLTGDVTLNPDAPIVVMTTEVLRNMIYADSDRLAS- 134
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +V+DEVH+L+D RG VWEE I+ V ++ LSATV+N +E GW+ +
Sbjct: 135 -----LTHVVMDEVHFLADRWRGPVWEETILNLDHSVTLVSLSATVSNVEEFGGWLRTLR 189
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
G+ ++I + +RPVPLT Y + ++ L + +H+
Sbjct: 190 GEMDVIVTDKRPVPLTQYMMVGSKIMRLFSKNAEHLA----------------------- 226
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
H + +++T+ G+ + N + P+ D + HL MLPAI+FI
Sbjct: 227 ----GEDHPGAINRSLLTAVGKAEAYGNQ-------RGPRREDVVRHLEQAKMLPAIYFI 275
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPD-AVREPA----------IKG 497
F+R GCD AVQ L L+ + E++ + A + I+ A EPA +
Sbjct: 276 FSRIGCDKAVQQL----LIRKVELTTPDEAREIGEIIDEGVAGLEPADLHMLGFRQWRRA 331
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
L++G AHHAG LP ++ +E+LF RGL+KV FATETLA GINMPART VL ++K
Sbjct: 332 LMRGFGAHHAGMLPAFRHIVEKLFSRGLLKVCFATETLALGINMPARTVVLEKMTKFNGE 391
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
+LT + Q+ GRAGRRGID G+ V++ +P L A PL S F Y
Sbjct: 392 AHAELTPGQYTQLTGRAGRRGIDTVGNAVVLWSPQVDPYAVAALASARTYPLDSTFRPGY 451
Query: 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVML 669
M +NL+ A + EA +++E+SF Y ++ ++
Sbjct: 452 NMAVNLI-------------------ATKGWAEAHRILERSFAQYQANDTIV 484
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 67/169 (39%), Gaps = 20/169 (11%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIK---VRLWKNNSSIYE 1064
GE A I E++L +A LR + DL PA+LAA ++ V E + VR ++ E
Sbjct: 746 GEKLARIHHESDLLVAQCLRRGLWDDLDPAELAAAVSACVFENRRESTVRTQLPTDALEE 805
Query: 1065 PSTTVINVIN--VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-- 1120
+ V V DE R +E F+ V W +G +
Sbjct: 806 AVAHTLRVYKELVSDEERHRLTATREPQ---------LGFATAVHQWVAGAPLEYCLQAA 856
Query: 1121 ---DCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
L GD R R DLL QI K+ ++K+A A + M R
Sbjct: 857 EASGAVLTPGDFVRACGRVKDLLDQI-KMTGYSNDVRKSARKAVDAMQR 904
>gi|408676942|ref|YP_006876769.1| putative helicase [Streptomyces venezuelae ATCC 10712]
gi|328881271|emb|CCA54510.1| putative helicase [Streptomyces venezuelae ATCC 10712]
Length = 942
Score = 323 bits (827), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 211/591 (35%), Positives = 304/591 (51%), Gaps = 92/591 (15%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+Y+F +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 31 MYEFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALTQGRKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + + +G++ VGLLTGD+++N +A I++MTTE+LRNMLY + L +
Sbjct: 91 SNQKYADLVKRYGNDKVGLLTGDNSVNGDAPIVVMTTEVLRNMLY------AGSQALSGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 145 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR-----KLSLNYLQLSTSEVKPYKDGGSR 389
S RPVPL + + L +E+ H R +L+ + L+L+ +E + R
Sbjct: 205 VSESRPVPLWQHVLAGRRMYDLFEEETDHGGRGASRRELNPDLLRLARTENTRTYNPRDR 264
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
RR + + + + I P+VI+ L + +LPAI FIF
Sbjct: 265 RRGK-----------MIREADRERERRQRSRIWTPGRPEVIE---RLDAEGLLPAITFIF 310
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAVREPAIKG-------- 497
+R GC+AAVQ +C + + L +R R + + R AI G
Sbjct: 311 SRAGCEAAVQ---------QCLYAGLRLNDEDGRRRVREIVEE--RTAAIPGEDLHVLGY 359
Query: 498 ------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
L +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L
Sbjct: 360 YEWLEALERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKL 419
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
K +T E Q+ GRAGRRGID GH V++ E L PL S
Sbjct: 420 VKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGLDPEHLAGLAGTRTYPLRS 479
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 671
F SY M +NL+ Q GR +R+L+E SF + ++
Sbjct: 480 SFKPSYNMAVNLVD-----------------QFGR--HRSRELLETSFAQFQADRSVVGI 520
Query: 672 KDELCK----IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELK 718
++ K +Q + +T + D ++E A L+ +LK
Sbjct: 521 SRQVQKNEEGLQGYREGMTCHLGD---------------FEEYARLRRDLK 556
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 117/265 (44%), Gaps = 17/265 (6%)
Query: 910 HMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 969
H++ E H + ++ARL+ +I R + D ++ E + RL+ +++L
Sbjct: 678 HINPERHRKQRSAAADDRELARLRTEI-RAHPCHGCDEREDHARWAE-RYHRLQRDTQQL 735
Query: 970 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 1029
+RIE + + F RI ++ E L N + G+ A + GE +L + LR++
Sbjct: 736 ERRIEGRTNTIARTFDRIVALLTELDYLRGNE--VTENGKRLARLYGELDLLASECLRDR 793
Query: 1030 ILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSF 1083
+ L PA+LAA ++LV E + +L N+ ++ + LD F
Sbjct: 794 VWEGLNPAELAACASALVFEARQSDDAVAPKLPTGNAKA--ALGEMVRIWGRLDALEEEF 851
Query: 1084 -LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 1142
+ E G P D F+ WAS + E++ + + GD R ++ ID+L Q
Sbjct: 852 KINQAEGVGQREP---DLGFAWAAYQWASDKSLDEVLREAEMPAGDFVRWCKQVIDVLGQ 908
Query: 1143 I-PKLPDVDQRLQKNAVDASNVMDR 1166
I P + + KNA A + + R
Sbjct: 909 IAAAAPRENSTVAKNARKAVDSLLR 933
>gi|359144147|ref|ZP_09178216.1| helicase [Streptomyces sp. S4]
Length = 935
Score = 322 bits (826), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 210/608 (34%), Positives = 308/608 (50%), Gaps = 64/608 (10%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + + G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 31 MYDFGLDPFQLDACRSLEEGKGVLVAAPTGSGKTIVGEFAVHLALGQSKKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 91 SNQKYADLAKRYGADKVGLLTGDNSVNPDAPVVVMTTEVLRNMLY------AGSQTLTGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P V ++ LSATV+NA+E W+ + G T++I
Sbjct: 145 GYVVMDEVHYLSDRFRGAVWEEVIIHLPPSVTLVSLSATVSNAEEFGDWLDTVRGDTDVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
S RPVPL + + L +E G+ + ++ + L+++ E RRR
Sbjct: 205 VSEHRPVPLFQHVLAGRRMYDLFEE-GEGAKKAVNPDLLRMARLESSRPTGPKDRRRGRN 263
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
S+ P+VI+ L + ++LPAI FIF+R GC
Sbjct: 264 MREADRERERRQRSRTWTPSR-----------PEVIE---RLDAENLLPAITFIFSRAGC 309
Query: 455 DAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGVAAHHA 507
+AAVQ L D+ S V ++ PD ++GL +G+AAHHA
Sbjct: 310 EAAVQQCLYAGLRLNDDAARSAVREIVEERTAAIPDEDLHVLGYFEWLEGLERGIAAHHA 369
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
G LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T E
Sbjct: 370 GMLPTFKEVVEELFLRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITPGEY 429
Query: 568 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 627
Q+ GRAGRRGID GH V++ E L PL S F SY M +NL+
Sbjct: 430 TQLTGRAGRRGIDVEGHAVVLWQRAMNPEHLAGLAGTRTYPLRSSFKPSYNMAVNLVH-- 487
Query: 628 KVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTS 687
Q GR +R+L+E SF + ++ ++ + ++ + +
Sbjct: 488 ---------------QFGR--HRSRELLETSFAQFQADRSVVGISRQVQRNEEGLEGYAA 530
Query: 688 EISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFE 747
++ D ++E L+ ELK + TEL R+ +R + L+
Sbjct: 531 SMTCHLGD-----------FEEYGRLRRELKDRE---TELARQGAGQRRAEAAGALEKLR 576
Query: 748 NG---HLP 752
G H+P
Sbjct: 577 PGDIIHVP 584
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 15/213 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RLK +++L +RIE + + F RI N++ E L N + G + + G
Sbjct: 717 ERYHRLKRDTRQLERRIEGRTNTIARTFDRIVNLLTELGYLRGNE--VTEDGRRLSRLYG 774
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E +L + LR + L PA+LAA ++LV E R + PS + +
Sbjct: 775 ELDLLASECLREGVWEGLGPAELAACVSALVFE---ARQADDAVVPKLPSGAAKAALGEM 831
Query: 1077 DEHRSSFLELQEKHGVEIPCCL-----DSQFSGMVEAWASGLTWREMMMDCALDDGDLAR 1131
L+E+HG+ + D F+ WASG ++ + + GD R
Sbjct: 832 VRIWGRLDALEEQHGISQTEGVGQREPDLGFAWAAYMWASGKGLDAVLREAEMPAGDFVR 891
Query: 1132 LLRRTIDLLAQI----PKLPDVDQRLQKNAVDA 1160
++ ID+L QI P+ V R + AVDA
Sbjct: 892 WCKQVIDVLGQIAAAAPEGSTV-ARSARKAVDA 923
>gi|169629275|ref|YP_001702924.1| ATP-dependent DNA helicase HelY [Mycobacterium abscessus ATCC
19977]
gi|419713215|ref|ZP_14240642.1| ATP-dependent DNA helicase HelY [Mycobacterium abscessus M94]
gi|420909776|ref|ZP_15373089.1| putative helicase helY [Mycobacterium abscessus 6G-0125-R]
gi|420916166|ref|ZP_15379471.1| putative helicase helY [Mycobacterium abscessus 6G-0125-S]
gi|420924348|ref|ZP_15387644.1| putative helicase helY [Mycobacterium abscessus 6G-0728-S]
gi|420927055|ref|ZP_15390338.1| putative helicase helY [Mycobacterium abscessus 6G-1108]
gi|420931244|ref|ZP_15394519.1| putative helicase helY [Mycobacterium massiliense 1S-151-0930]
gi|420939772|ref|ZP_15403041.1| putative helicase helY [Mycobacterium massiliense 1S-152-0914]
gi|420941501|ref|ZP_15404759.1| putative helicase helY [Mycobacterium massiliense 1S-153-0915]
gi|420946326|ref|ZP_15409578.1| putative helicase helY [Mycobacterium massiliense 1S-154-0310]
gi|420966557|ref|ZP_15429762.1| putative helicase helY [Mycobacterium abscessus 3A-0810-R]
gi|420977397|ref|ZP_15440577.1| putative helicase helY [Mycobacterium abscessus 6G-0212]
gi|420982771|ref|ZP_15445941.1| putative helicase helY [Mycobacterium abscessus 6G-0728-R]
gi|421007312|ref|ZP_15470424.1| putative helicase helY [Mycobacterium abscessus 3A-0119-R]
gi|421012695|ref|ZP_15475782.1| putative helicase helY [Mycobacterium abscessus 3A-0122-R]
gi|421023437|ref|ZP_15486484.1| putative helicase helY [Mycobacterium abscessus 3A-0731]
gi|421028191|ref|ZP_15491226.1| putative helicase helY [Mycobacterium abscessus 3A-0930-R]
gi|421033685|ref|ZP_15496707.1| putative helicase helY [Mycobacterium abscessus 3A-0930-S]
gi|169241242|emb|CAM62270.1| Probable ATP-dependent DNA helicase HelY [Mycobacterium abscessus]
gi|382946625|gb|EIC70908.1| ATP-dependent DNA helicase HelY [Mycobacterium abscessus M94]
gi|392122150|gb|EIU47915.1| putative helicase helY [Mycobacterium abscessus 6G-0125-R]
gi|392123850|gb|EIU49612.1| putative helicase helY [Mycobacterium abscessus 6G-0125-S]
gi|392129001|gb|EIU54751.1| putative helicase helY [Mycobacterium abscessus 6G-0728-S]
gi|392135740|gb|EIU61478.1| putative helicase helY [Mycobacterium abscessus 6G-1108]
gi|392136003|gb|EIU61740.1| putative helicase helY [Mycobacterium massiliense 1S-151-0930]
gi|392145287|gb|EIU71012.1| putative helicase helY [Mycobacterium massiliense 1S-152-0914]
gi|392150983|gb|EIU76695.1| putative helicase helY [Mycobacterium massiliense 1S-153-0915]
gi|392156534|gb|EIU82235.1| putative helicase helY [Mycobacterium massiliense 1S-154-0310]
gi|392167978|gb|EIU93659.1| putative helicase helY [Mycobacterium abscessus 6G-0212]
gi|392174789|gb|EIV00456.1| putative helicase helY [Mycobacterium abscessus 6G-0728-R]
gi|392200241|gb|EIV25848.1| putative helicase helY [Mycobacterium abscessus 3A-0119-R]
gi|392205235|gb|EIV30819.1| putative helicase helY [Mycobacterium abscessus 3A-0122-R]
gi|392214406|gb|EIV39958.1| putative helicase helY [Mycobacterium abscessus 3A-0731]
gi|392230226|gb|EIV55736.1| putative helicase helY [Mycobacterium abscessus 3A-0930-S]
gi|392230756|gb|EIV56265.1| putative helicase helY [Mycobacterium abscessus 3A-0930-R]
gi|392251998|gb|EIV77467.1| putative helicase helY [Mycobacterium abscessus 3A-0810-R]
Length = 922
Score = 322 bits (826), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 211/544 (38%), Positives = 285/544 (52%), Gaps = 50/544 (9%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + A G V+V APT +GKT++ E A +A R+ FYTTP+KALSNQ
Sbjct: 18 FALDPFQVRACTALENGHGVLVCAPTGAGKTIVGEFAVHLALAAGRKCFYTTPIKALSNQ 77
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K + +G VGLLTGDS+IN +A +++MTTE+LRNMLY + L + +
Sbjct: 78 KHNDLVSVYGPEKVGLLTGDSSINSDAPVVVMTTEVLRNMLY------ADSPALHGLSYV 131
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVH+L+D RG VWEE+I++ P++V + LSATV+NA+E GWI + G T ++
Sbjct: 132 VMDEVHFLADRFRGAVWEEVILHLPEDVALASLSATVSNAEEFGGWIKTVRGDTTVVVDE 191
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RPVPL + L L D + + R+ S + S V P G +R R+ A
Sbjct: 192 TRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG--TGNPSRVDP---GLTRYIAQRRQA 245
Query: 398 DMNSN-NIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
D ++ + G Q + R P+VI L +LPAI FIF+R GCD
Sbjct: 246 DRFADFDRPRRRGPQQRTSRPPTLYRPPSRPEVIT---RLDEDGLLPAITFIFSRAGCDG 302
Query: 457 AV-QYLED-CNLLDECEMSEVELALKRFRILYPDAV---------REPAIKGLLKGVAAH 505
AV Q L L E E E+ + R P+A RE GLL+G+AAH
Sbjct: 303 AVAQCLRSRLRLTTEEERREIIAIIDRRTEGLPEADLDVLGYWQWRE----GLLRGIAAH 358
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP+++ +EELF +GLVK VFATETLA GINMPART VL L K LT
Sbjct: 359 HAGMLPVFRHTVEELFTKGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHAALTPG 418
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E Q+ GRAGRRGID GH V++ TP E L PL S F SY M +NL
Sbjct: 419 EYTQLTGRAGRRGIDVEGHAVVLWTPEVEPTEIAGLASTRTFPLRSSFAPSYNMTINL-- 476
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 685
+H + AR+L+E+SF Y ++ + + +K D +
Sbjct: 477 ----VHRMGP-------------DPARELLERSFAQYQADRSVVGLVRGIERGRKMLDEI 519
Query: 686 TSEI 689
E+
Sbjct: 520 AGEL 523
Score = 43.9 bits (102), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 18/210 (8%)
Query: 955 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETA 1011
T E+ R++ + +L K++ S + F RI ++ E ++ + ++ + G
Sbjct: 699 TGERYLRIERDNAQLQKKVAAATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLL 758
Query: 1012 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 1071
A I E++L +A LR + LKPA+LAAV ++++ E S+ E T +
Sbjct: 759 ARIYSESDLLVAECLRRGLWAGLKPAELAAVASAVLYES----RGDTVSATGEAPTAALR 814
Query: 1072 VINVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCA 1123
L E + L +++H + +D F V WA+ + A
Sbjct: 815 --GALAETHRALARLRRDEQQHHLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTA 872
Query: 1124 LDDGDLARLLRRTIDLLAQIPK-LPDVDQR 1152
L GD R R+ +DLL QI K PD + R
Sbjct: 873 LPAGDFVRWCRQVVDLLDQIHKAAPDAEVR 902
>gi|421017602|ref|ZP_15480663.1| putative helicase helY [Mycobacterium abscessus 3A-0122-S]
gi|392212537|gb|EIV38099.1| putative helicase helY [Mycobacterium abscessus 3A-0122-S]
Length = 914
Score = 322 bits (826), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 211/544 (38%), Positives = 285/544 (52%), Gaps = 50/544 (9%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + A G V+V APT +GKT++ E A +A R+ FYTTP+KALSNQ
Sbjct: 10 FALDPFQVRACTALENGHGVLVCAPTGAGKTIVGEFAVHLALAAGRKCFYTTPIKALSNQ 69
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K + +G VGLLTGDS+IN +A +++MTTE+LRNMLY + L + +
Sbjct: 70 KHNDLVSVYGPEKVGLLTGDSSINSDAPVVVMTTEVLRNMLY------ADSPALHGLSYV 123
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVH+L+D RG VWEE+I++ P++V + LSATV+NA+E GWI + G T ++
Sbjct: 124 VMDEVHFLADRFRGAVWEEVILHLPEDVALASLSATVSNAEEFGGWIKTVRGDTTVVVDE 183
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RPVPL + L L D + + R+ S + S V P G +R R+ A
Sbjct: 184 TRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG--TGNPSRVDP---GLTRYIAQRRQA 237
Query: 398 DMNSN-NIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
D ++ + G Q + R P+VI L +LPAI FIF+R GCD
Sbjct: 238 DRFADFDRPRRRGPQQRTSRPPTLYRPPSRPEVIT---RLDEDGLLPAITFIFSRAGCDG 294
Query: 457 AV-QYLED-CNLLDECEMSEVELALKRFRILYPDAV---------REPAIKGLLKGVAAH 505
AV Q L L E E E+ + R P+A RE GLL+G+AAH
Sbjct: 295 AVAQCLRSRLRLTTEEERREIIAIIDRRTEGLPEADLDVLGYWQWRE----GLLRGIAAH 350
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP+++ +EELF +GLVK VFATETLA GINMPART VL L K LT
Sbjct: 351 HAGMLPVFRHTVEELFTKGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHAALTPG 410
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E Q+ GRAGRRGID GH V++ TP E L PL S F SY M +NL
Sbjct: 411 EYTQLTGRAGRRGIDVEGHAVVLWTPEVEPTEIAGLASTRTFPLRSSFAPSYNMTINL-- 468
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 685
+H + AR+L+E+SF Y ++ + + +K D +
Sbjct: 469 ----VHRMGP-------------DPARELLERSFAQYQADRSVVGLVRGIERGRKMLDEI 511
Query: 686 TSEI 689
E+
Sbjct: 512 AGEL 515
Score = 43.9 bits (102), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 18/210 (8%)
Query: 955 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETA 1011
T E+ R++ + +L K++ S + F RI ++ E ++ + ++ + G
Sbjct: 691 TGERYLRIERDNAQLQKKVAAATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLL 750
Query: 1012 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 1071
A I E++L +A LR + LKPA+LAAV ++++ E S+ E T +
Sbjct: 751 ARIYSESDLLVAECLRRGLWAGLKPAELAAVASAVLYES----RGDTVSATGEAPTAALR 806
Query: 1072 VINVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCA 1123
L E + L +++H + +D F V WA+ + A
Sbjct: 807 --GALAETHRALARLRRDEQQHHLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTA 864
Query: 1124 LDDGDLARLLRRTIDLLAQIPK-LPDVDQR 1152
L GD R R+ +DLL QI K PD + R
Sbjct: 865 LPAGDFVRWCRQVVDLLDQIHKAAPDAEVR 894
>gi|376254319|ref|YP_005142778.1| putative helicase [Corynebacterium diphtheriae PW8]
gi|372117403|gb|AEX69873.1| putative helicase [Corynebacterium diphtheriae PW8]
Length = 930
Score = 322 bits (826), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 219/608 (36%), Positives = 316/608 (51%), Gaps = 66/608 (10%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D+FQ +A G V+V APT +GKT++ E A ++ Q + FYTTP+
Sbjct: 14 FAARQKFPLDEFQIRGCQAVESGRGVLVCAPTGAGKTIVGEFAVSLAISQQTKCFYTTPI 73
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKF + + G++ VGLLTGD +INR+A I++MT E+LRNM+Y + L
Sbjct: 74 KALSNQKFHDLVKAHGEDKVGLLTGDVSINRDADIVVMTAEVLRNMIY------ADSEAL 127
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ +V+DE+H+LSD SRG VWEE I+ V +I LSATV+N++E W+ + G T
Sbjct: 128 DRLSHVVMDEIHFLSDSSRGAVWEEAILGLDASVNVIGLSATVSNSEEFGRWLNTVRGDT 187
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL--SLNYLQLSTSEVKPY---- 383
E+I S RPVPL + + PL E G +N +L + L+ +T++ Y
Sbjct: 188 EIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLVEHIERLEGTTTDGTEYGRAQ 246
Query: 384 -KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
+ GG R R+ M S+N + H+ S A+ R D L L+ +DML
Sbjct: 247 LQAGGFRNRSR----AMGSDNRASRRSPHRRSDKH-RALSRP------DVLHILQEQDML 295
Query: 443 PAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE----------VELALKRFRILYPDAVR 491
PAI FIF+R GCDAA+ Q + +L E SE + + R+L R
Sbjct: 296 PAITFIFSRAGCDAALHQCMRSSLVLTTQEESEEISDIITAGVAGIPEEDLRLLEYRRWR 355
Query: 492 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
+ L++G AAHHAG LP ++ +E+LF +GLV+ VFATETLA GINMPART VL L
Sbjct: 356 Q----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFATETLALGINMPARTVVLEKL 411
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
K G LT + Q+ GRAGRRGID G+ V+ P + L PLVS
Sbjct: 412 VKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWAPAMDPGQVAGLASTRTYPLVS 471
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 671
F Y M +NLL K + E A +L+E+SF + ++
Sbjct: 472 TFAPGYNMSVNLL---------------KTI----GFEPAHRLLEKSFAQFQADGSVVDD 512
Query: 672 KDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEMANLQEELKAEKRFRTEL--- 727
+ +++ D LT ++ A D ++ + ++ E ++ EL E+R L
Sbjct: 513 IKAIESLEESVDQLTKQLH-AAFDSHNQGGAGDVDSFLEYIRIRRELTEEERKHKRLSIE 571
Query: 728 RRRMELKR 735
+R ME R
Sbjct: 572 QRDMETTR 579
Score = 46.6 bits (109), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 101/232 (43%), Gaps = 14/232 (6%)
Query: 938 RTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL 997
R+ ++K D + E+ ++ + K E + G + F RI N++ E +
Sbjct: 694 RSHPAHHWRKREDLARVGEQLVREQRMLEAAQRKVNEATDTLG-RTFDRIINLLAEYDYV 752
Query: 998 DIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRL 1055
+ + VI GE I E++L +A L+ I DL PA+LA V + + E +
Sbjct: 753 EFHDGVPVITEEGENLCQIHNESDLLVAQCLKRGIWDDLDPAELAGVVSMCIFENRRETR 812
Query: 1056 WKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTW 1115
+ +++ E + + N + + +E + + ++ + + + F+ + WA+G
Sbjct: 813 GEPDAATEEMAKAMNNTVRIWEELSTD----ERRYRLPVTRYPEGGFALAMHQWAAGAPL 868
Query: 1116 REMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQRLQKNAVDA 1160
+ A L GD R R+ +DLL Q+ + +R + A+DA
Sbjct: 869 GYCIAAAAESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRRAARKAIDA 920
>gi|384193835|ref|YP_005579581.1| helicase [Bifidobacterium animalis subsp. lactis BLC1]
gi|345282694|gb|AEN76548.1| helicase [Bifidobacterium animalis subsp. lactis BLC1]
Length = 863
Score = 322 bits (826), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 234/674 (34%), Positives = 344/674 (51%), Gaps = 96/674 (14%)
Query: 106 QSDDEFEVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQR 165
+S DE E+S PA +R FK R +++ + F + M F +D FQ+
Sbjct: 12 ESTDERELS----PAERYRA-FKESR-KRMQSVAARFADRM----------PFELDAFQQ 55
Query: 166 SSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI--FYTTPLKALSNQKFREFR 223
+ EA GS+V+V+APT +GKT++A+ A +A QR + FYTTP+KALSNQK+ +
Sbjct: 56 DANEALEAGSNVLVAAPTGAGKTVVADFAIY--LAQQRNVKAFYTTPIKALSNQKYHDLV 113
Query: 224 ETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283
+ +G + VGLLTGD++IN EA I++MTTE+LRNMLY+ +++ + ++LDEVH
Sbjct: 114 DMYGADKVGLLTGDTSINSEADIVVMTTEVLRNMLYEHSTTLNA------LGYVILDEVH 167
Query: 284 YLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPL 343
YL+D RG +WEE+II+ P+ V+II LSATV+N ++ A WI + G T+L+ S RPVPL
Sbjct: 168 YLADRFRGPIWEEVIIHLPQSVRIIGLSATVSNVEDFADWIESVRGDTKLVVSEHRPVPL 227
Query: 344 TWYF------STKTALLPL-----LDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
Y T+ L L + E+ MN +L +L E + + + R+
Sbjct: 228 DQYVLLQKDPRTEPELFDLYCRDDMGEQTVKMNARLMNRLDELDRMEARRAR-ADTHGRS 286
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R+ V ++Q + + V+D L L MLPAI+F+F+R
Sbjct: 287 ERRQDRGGKRKFVRKPERYQPRRWA-----------VVDELNFL---GMLPAIYFVFSRN 332
Query: 453 GCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVREPAIKGLLK 500
GCD AV+ + L DE EM E +L + + L+ R L +
Sbjct: 333 GCDEAVEQCLNAGLRLTTDEEALHIRKIVDEMIEGQLTREDLKTLHFSQFR----YALEE 388
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G AAHHAG + ++K +E LF+ GL+K VFATETLA GINMPAR+ V+ L K +G +
Sbjct: 389 GFAAHHAGMIALFKQIVERLFEEGLIKCVFATETLALGINMPARSVVVEKLEKYNGTGIV 448
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
LT E Q+ GRAGRRGID G+ ++V E L V PL S F A++ M
Sbjct: 449 PLTPGEYTQLTGRAGRRGIDTIGNAIVVDHRDFKPETAVALSSKRVYPLHSSFKATFNMA 508
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
+NLL N SD E AR ++ SF + + + + K++K
Sbjct: 509 VNLL---------NSSD----------YETARDTLDHSFAQWEANESAWDLEARIDKLRK 549
Query: 681 ETDVLTSEISDDAIDR----KSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRF 736
+ +DA D + R LS+ E L+ E+ F++ R +R
Sbjct: 550 AIAGYEEAMGNDAGDMVELLRIRMKLSDLQKNERRRLKHEV-----FKSNEERSRAFRRL 604
Query: 737 SALKDILKDFENGH 750
A LK+ E H
Sbjct: 605 DAQIAQLKEQEANH 618
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 17/189 (8%)
Query: 967 KRLTKRIEQIEPSGWKEFLRISN---VIHETRALDINTQVIFPLGETAAAIR---GENEL 1020
+RL R E S ++F RI + V+ D N + + L E +R E +L
Sbjct: 644 ERLEYRYESRTSSVARQFDRICHSLEVLGYLETADENGHIDYRLTEYGQLLRRLYTERDL 703
Query: 1021 WLAMVLRNKILLDLKPAQLAAVCASLV-----SEGIKVRLWKNNSSIYEPSTTVINVINV 1075
LA + + I DL +LAAV +SL+ EG + R + P V+ N
Sbjct: 704 VLAQAITHGIFDDLNAPELAAVMSSLLYEPRRGEGGEPRRYPGG-----PRGRVMQAANA 758
Query: 1076 LDEHRSSFLELQEKHGVE-IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLR 1134
L + + L E +G+E LD ++ WA G + E++ + GD R +
Sbjct: 759 LRDMDGQIIALCEANGLENYLQPLDFGIVDLMYNWAYGDSLSEVLEHSDMTGGDFVRTAK 818
Query: 1135 RTIDLLAQI 1143
R D+L QI
Sbjct: 819 RIADVLQQI 827
>gi|120404412|ref|YP_954241.1| DEAD/DEAH box helicase [Mycobacterium vanbaalenii PYR-1]
gi|119957230|gb|ABM14235.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii
PYR-1]
Length = 929
Score = 322 bits (826), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 204/537 (37%), Positives = 277/537 (51%), Gaps = 70/537 (13%)
Query: 143 GNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ 202
G V ++ F +D FQR + EA +G V+V APT +GKT++ E A +A
Sbjct: 8 GTATESVAAFTALLPFELDDFQRRACEALAQGHGVLVCAPTGAGKTVVGEFAVHLALAAG 67
Query: 203 RRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSV 262
R+ FYTTP+KALSNQK + +G +GLLTGD AIN +A +++MTTE+LRNMLY
Sbjct: 68 RKCFYTTPIKALSNQKHNDLVLRYGPKRIGLLTGDQAINGDADVVVMTTEVLRNMLY--- 124
Query: 263 GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAG 322
+ L + +V+DEVH+L+D RG VWEE+I++ P+EV+++ LSATV+NA+E G
Sbjct: 125 ---ADSRALQGLSYVVMDEVHFLADRMRGAVWEEVILHLPEEVRLVSLSATVSNAEEFGG 181
Query: 323 WIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKH-MNRKLSLNYLQLSTSEVK 381
WI + G T ++ RPVPL + LL L D + R L ++ L
Sbjct: 182 WIKTVRGDTTVVVDEHRPVPLWQHVMVGKRLLDLFDYRASGPAGRNLLVDPELLRHI--- 238
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
+ RR + + D S L + A +VI+ L ++
Sbjct: 239 ------AHRREAERLTDWQPRGRGRSGRPSGLYRTPGRA-------EVINVLAQ---DNL 282
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV-REPA------ 494
LPAI FIF+R GCDAAV+ +C S + L R D V R A
Sbjct: 283 LPAITFIFSRAGCDAAVK---------QCLRSSLRLTTDEERARIADIVDRRTADLNDSD 333
Query: 495 ---------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
+GLL+G+AAHHAG LP+++ +EELF GLVK VFATETLA GINMPART
Sbjct: 334 LIVLDFHEWREGLLRGLAAHHAGMLPVFRHTVEELFTAGLVKAVFATETLALGINMPART 393
Query: 546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 605
VL L K + LT E Q+ GRAGRRGID GH V++ P E L
Sbjct: 394 VVLEKLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVLWNPDVDPAEVAGLASTR 453
Query: 606 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F +Y M +NL+ Q G + +A +L+E+SF Y
Sbjct: 454 TFPLRSSFAPTYNMTINLVH-----------------QMGPA--QAHQLLERSFAQY 491
>gi|126435097|ref|YP_001070788.1| DEAD/DEAH box helicase [Mycobacterium sp. JLS]
gi|126234897|gb|ABN98297.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS]
Length = 918
Score = 322 bits (826), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 210/550 (38%), Positives = 290/550 (52%), Gaps = 54/550 (9%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D FQ + EA G V+V APT +GKT++ E A +A + FYTTP+
Sbjct: 12 FAAGMPFALDPFQIRACEALESGHGVLVCAPTGAGKTVVGEFAVHLALAAGGKCFYTTPI 71
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK + +G +GLLTGD +IN +A I++MTTE+LRNMLY + L
Sbjct: 72 KALSNQKHADLVRRYGPEKIGLLTGDQSINGDADIVVMTTEVLRNMLY------ADSPAL 125
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ +V+DEVH+L+D RG VWEE+I++ P EV+++ LSATV+NA+E GWI + G T
Sbjct: 126 HGLSHVVMDEVHFLADRMRGAVWEEVILHLPDEVRLVSLSATVSNAEEFGGWIQTVRGDT 185
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
++ RPVPL + L L D + R S L + ++ + RR
Sbjct: 186 TVVVDEHRPVPLWQHVLVGKRLFDLFDYRAHSPAR--SGRELVVDPELLRHI----AHRR 239
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
+ + AD G+ + + S I R P D + L +LPAI F+F+R
Sbjct: 240 EADRLADWQPR------GRGRSAHRSRPTIYRP--PARPDVIAALDREGLLPAITFVFSR 291
Query: 452 RGCDAAV-QYLEDCNLLDECE----MSEV------ELALKRFRILYPDAVREPAIKGLLK 500
GCDAAV Q L L E ++EV +LA +L RE GLL+
Sbjct: 292 AGCDAAVKQCLRSPLRLTTNEERQRIAEVIDRRCADLAEADLIVLDYHEWRE----GLLR 347
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+AAHHAG LP+++ +EELF GLVK VFATETLA GINMPART VL L K +
Sbjct: 348 GLAAHHAGMLPVFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLEKLVKFNGEQHM 407
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
LT E Q+ GRAGRRGID GH V++ TP E L PL S F SY M
Sbjct: 408 PLTPGEYTQLTGRAGRRGIDVEGHAVVLWTPDVEPVEVAGLASTRTFPLRSSFAPSYNMT 467
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
+NL+ Q G + +AR+L+EQSF Y ++ + + + ++
Sbjct: 468 INLVH-----------------QMGPA--QARQLLEQSFAQYQADRSVVGLRRGVERGER 508
Query: 681 ETDVLTSEIS 690
D + +E+
Sbjct: 509 MLDEIAAELG 518
>gi|376284742|ref|YP_005157952.1| putative helicase [Corynebacterium diphtheriae 31A]
gi|371578257|gb|AEX41925.1| putative helicase [Corynebacterium diphtheriae 31A]
Length = 930
Score = 322 bits (826), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 219/608 (36%), Positives = 316/608 (51%), Gaps = 66/608 (10%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D+FQ +A G V+V APT +GKT++ E A ++ Q + FYTTP+
Sbjct: 14 FAARQKFPLDEFQIRGCQAVESGRGVLVCAPTGAGKTIVGEFAVSLAISQQTKCFYTTPI 73
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKF + + G++ VGLLTGD +INR+A I++MT E+LRNM+Y + L
Sbjct: 74 KALSNQKFHDLVKAHGEDKVGLLTGDVSINRDADIVVMTAEVLRNMIY------ADSEAL 127
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ +V+DE+H+LSD SRG VWEE I+ V +I LSATV+N++E W+ + G T
Sbjct: 128 DRLSHVVMDEIHFLSDSSRGAVWEEAILGLDASVNVIGLSATVSNSEEFGRWLNTVRGDT 187
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL--SLNYLQLSTSEVKPY---- 383
E+I S RPVPL + + PL E G +N +L + L+ +T++ Y
Sbjct: 188 EIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLVEHIERLEGTTTDGTEYGRAQ 246
Query: 384 -KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
+ GG R R+ M S+N + H+ S A+ R D L L+ +DML
Sbjct: 247 LQAGGFRNRSR----AMGSDNRASRRSPHRRSDKH-RALSRP------DVLHILQEQDML 295
Query: 443 PAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE----------VELALKRFRILYPDAVR 491
PAI FIF+R GCDAA+ Q + +L E SE + + R+L R
Sbjct: 296 PAITFIFSRAGCDAALHQCMRSSLVLTTQEESEEISDIITAGVAGIPEEDLRLLEYRRWR 355
Query: 492 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
+ L++G AAHHAG LP ++ +E+LF +GLV+ VFATETLA GINMPART VL L
Sbjct: 356 Q----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFATETLALGINMPARTVVLEKL 411
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
K G LT + Q+ GRAGRRGID G+ V+ P + L PLVS
Sbjct: 412 VKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWAPAMDPGQVAGLASTRTYPLVS 471
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 671
F Y M +NLL K + E A +L+E+SF + ++
Sbjct: 472 TFAPGYNMSVNLL---------------KTI----GFEPAHRLLEKSFAQFQADGSVVDD 512
Query: 672 KDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEMANLQEELKAEKRFRTEL--- 727
+ +++ D LT ++ A D ++ + ++ E ++ EL E+R L
Sbjct: 513 IKAIESLEESVDQLTKQLH-AAFDSHNQGGAGDVDSFLEYIRIRRELTEEERKHKRLSIE 571
Query: 728 RRRMELKR 735
+R ME R
Sbjct: 572 QRDMETTR 579
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 101/232 (43%), Gaps = 14/232 (6%)
Query: 938 RTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL 997
R+ ++K D + E+ ++ + K E + G + F RI N++ E +
Sbjct: 694 RSHPAHHWRKREDLARVGEQLVREQRMLEAAQRKVNEATDTLG-RTFDRIINLLAEYDYV 752
Query: 998 DIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRL 1055
+ + VI GE I E++L +A L+ I DL PA+LA V + + E +
Sbjct: 753 EFHDGVPVITEEGENLCQIHNESDLLVAQCLKRGIWDDLDPAELAGVVSMCIFENRRETR 812
Query: 1056 WKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTW 1115
+ +++ E + + N + + +E + + ++ + + + F+ + WA+G
Sbjct: 813 REPDAATEEMAKAMNNTVRIWEELSTD----ERRYRLPVTRYPEGGFALAMHQWAAGAPL 868
Query: 1116 REMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQRLQKNAVDA 1160
+ A L GD R R+ +DLL Q+ + +R + A+DA
Sbjct: 869 GYCIAAAAESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRRAARKAIDA 920
>gi|390936819|ref|YP_006394378.1| putative helicase [Bifidobacterium bifidum BGN4]
gi|389890432|gb|AFL04499.1| putative helicase [Bifidobacterium bifidum BGN4]
Length = 875
Score = 322 bits (826), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 200/514 (38%), Positives = 278/514 (54%), Gaps = 89/514 (17%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D FQ+ +I+A RG +V+V+APT +GKT++A+ A + FYTTP+
Sbjct: 39 FAATLPFDLDDFQQDAIDALERGENVLVAAPTGAGKTVVADFAMYLARERNVKAFYTTPI 98
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + +G + VGLLTGD +IN EA I++MTTE+LRNMLY+ M+++
Sbjct: 99 KALSNQKYHDLTAVYGADRVGLLTGDISINSEADIVVMTTEVLRNMLYEHSTMLNA---- 154
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ ++LDEVHYL+D RG VWEE+II+ P++V +I LSATV+N ++ + WI + G T
Sbjct: 155 --LRFVILDEVHYLADRFRGPVWEEVIIHLPRQVSVIGLSATVSNVEDFSSWISSVRGDT 212
Query: 332 ELITSSRRPVPLTWYF------STKTALLPLL--DEKGKH---MNRKLSLNYLQLSTSEV 380
+L+ S RRPVPL + T+ LL L D +G+ +N +L QL
Sbjct: 213 KLVVSERRPVPLEQHVLVQADDHTEPELLDLYRRDAQGEQTTKLNARLIDRLDQLDRQAA 272
Query: 381 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLR 437
+ SR R R H S+ + A R + P+ V+D L +L
Sbjct: 273 RRRGTENSRSRG-RGH-----------------SRGHVPAQRHT--PKRWAVVDELNYL- 311
Query: 438 SRDMLPAIWFIFNRRGCDAAVQYLEDC-----NLLDECEMSEVE---------------- 476
DMLP I+FIF+R GCD AV E C L E EM +
Sbjct: 312 --DMLPGIYFIFSRNGCDQAV---EQCINAGLELTTEDEMRRIRAIVDEMVAGQLSQEDL 366
Query: 477 --LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 534
L RFR L +G A+HHAG + +++ +E LF+ GLVK+VFATET
Sbjct: 367 KALQFSRFRF------------ALEEGFASHHAGMVALFRQIVERLFEEGLVKMVFATET 414
Query: 535 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----T 590
LA GINMPAR ++ L K SG + LT E Q+ GRAGRRGID GH ++V
Sbjct: 415 LALGINMPARCVIVEKLEKFNGSGHVPLTPGEFTQLTGRAGRRGIDTIGHAIVVDHRDFV 474
Query: 591 PYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
P A K ++ PL S F A++ M +NLL
Sbjct: 475 PATAAALSSKRVY----PLHSSFHATFNMAVNLL 504
Score = 47.8 bits (112), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 108/257 (42%), Gaps = 18/257 (7%)
Query: 921 NYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG 980
++E + LKK+ R ++ + +K+ I+ ++ +R+ R E S
Sbjct: 592 TFRELDQSIETLKKR-DREHPCRQCPDMQQHMKWGHRWIREMR-EYERVQHRYESRTGSV 649
Query: 981 WKEFLRISNVIHETRAL--DINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 1038
++F RI +++ + + D + G+ I E ++ LA L + L Q
Sbjct: 650 ARQFDRICSILEQLGYVKRDGTDMRLSEQGQLLRHIYSEQDIVLAEALERGMFDHLTARQ 709
Query: 1039 LAAVCASLVSE-----GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 1093
LAAV ++LV E G + R W I P V LD + L E G++
Sbjct: 710 LAAVLSALVFEARGGTGGEPRRWPGG--IQGP---VAQTSQSLDRLHAQLTMLCEDEGLD 764
Query: 1094 IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI----PKLPDV 1149
LD ++ WASG + ++ D + GD R +R D+L QI P LP
Sbjct: 765 DLQQLDFGIVDIMYDWASGNSLAYVLHDRDMTGGDFVRNAKRLSDILQQISAAEPYLPQG 824
Query: 1150 DQRLQKNAVDASNVMDR 1166
L + A +A +++R
Sbjct: 825 SAHLAQVAHEAMELVNR 841
>gi|419708512|ref|ZP_14235981.1| ATP-dependent DNA helicase HelY [Mycobacterium abscessus M93]
gi|382943787|gb|EIC68098.1| ATP-dependent DNA helicase HelY [Mycobacterium abscessus M93]
Length = 922
Score = 322 bits (826), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 211/544 (38%), Positives = 285/544 (52%), Gaps = 50/544 (9%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + A G V+V APT +GKT++ E A +A R+ FYTTP+KALSNQ
Sbjct: 18 FALDPFQVRACTALENGHGVLVCAPTGAGKTIVGEFAVHLALAAGRKCFYTTPIKALSNQ 77
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K + +G VGLLTGDS+IN +A +++MTTE+LRNMLY + L + +
Sbjct: 78 KHNDLVSVYGPEKVGLLTGDSSINSDAPVVVMTTEVLRNMLY------ADSPALHGLSYV 131
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVH+L+D RG VWEE+I++ P+ V + LSATV+NA+E GWI + G T ++
Sbjct: 132 VMDEVHFLADRFRGAVWEEVILHLPENVALASLSATVSNAEEFGGWIKTVRGDTTVVVDE 191
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RPVPL + L L D + + R+ S + S+V P G +R R+ A
Sbjct: 192 TRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG--TGNPSQVDP---GLTRYIAQRRQA 245
Query: 398 DMNSN-NIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
D ++ + G Q + R P+VI L +LPAI FIF+R GCD
Sbjct: 246 DRFADFDRPRRRGPQQRTSRPPTLYRPPSRPEVIT---RLDEDGLLPAITFIFSRAGCDG 302
Query: 457 AV-QYLED-CNLLDECEMSEVELALKRFRILYPDAV---------REPAIKGLLKGVAAH 505
AV Q L L E E E+ + R P+A RE GLL+G+AAH
Sbjct: 303 AVAQCLRSRLRLTTEEERREIIAIIDRRTEGLPEADLDVLGYWQWRE----GLLRGIAAH 358
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP+++ +EELF +GLVK VFATETLA GINMPART VL L K LT
Sbjct: 359 HAGMLPVFRHTVEELFTKGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHAALTPG 418
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E Q+ GRAGRRGID GH V++ TP E L PL S F SY M +NL
Sbjct: 419 EYTQLTGRAGRRGIDVEGHAVVLWTPEVEPTEIAGLASTRTFPLRSSFAPSYNMTINL-- 476
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 685
+H + AR+L+E+SF Y ++ + + +K D +
Sbjct: 477 ----VHRMGP-------------DPARELLERSFAQYQADRSVVGLVRGIERGRKMLDEI 519
Query: 686 TSEI 689
E+
Sbjct: 520 AGEL 523
Score = 42.0 bits (97), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 18/208 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETAAA 1013
E+ R++ + +L K++ S + F RI ++ E ++ + ++ + G A
Sbjct: 701 ERYLRIERDNAQLQKKVAAATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLLAR 760
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
I E++L +A LR + LKPA+LAAV ++++ E S+ E T +
Sbjct: 761 IYSESDLLVAECLRRGLWAGLKPAELAAVASAVLYES----RGDTVSATGEAPTAALR-- 814
Query: 1074 NVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCALD 1125
L E + L +++H + +D F V WA+ + AL
Sbjct: 815 GALAETHRALARLRRDEQQHYLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTALP 874
Query: 1126 DGDLARLLRRTIDLLAQIPK-LPDVDQR 1152
GD R R+ +DLL QI K PD + R
Sbjct: 875 AGDFVRWCRQVVDLLDQIHKAAPDTEVR 902
>gi|373252718|ref|ZP_09540836.1| superfamily II RNA helicase [Nesterenkonia sp. F]
Length = 990
Score = 322 bits (826), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 220/606 (36%), Positives = 308/606 (50%), Gaps = 73/606 (12%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D+FQ + G +V+V+APT +GKT++ E A +A + FYTTP+KALSNQ
Sbjct: 31 FDLDEFQAEACRHLEDGEAVLVAAPTGAGKTVVGEFAVHLGLARGTKTFYTTPIKALSNQ 90
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K++E E G VGLLTGD+++N +AQI++MTTE+LRNMLY + L D+ +
Sbjct: 91 KYQELAEQHGPERVGLLTGDTSVNADAQIVVMTTEVLRNMLY------TDAEPLRDLGYV 144
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVHYL+D RG VWEE+II+ P+ VQ++ LSATV+NA+E W+ + G+T ++ S
Sbjct: 145 VMDEVHYLADRFRGAVWEEVIIHLPESVQVVALSATVSNAEEFGAWLDTVRGETAVVVSE 204
Query: 338 RRPVPLTWYFSTKTALLPLL----DEKGKHMNRKLSLNYLQLSTSEVKP--YKDGGSRRR 391
RPVPL + + L DE ++ + +L+ + P + G +
Sbjct: 205 HRPVPLWQHMYVDGQIHDLFVTDGDEDDAVSAALVNPDLQRLAHQQQSPASRRGGPHAKG 264
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD-MLPAIWFIFN 450
+ + G S R P++I L RD +LP I FIF+
Sbjct: 265 GKGGRGRGAGSRPRGAGGSVSGVSGSPVGGSRLNRPRLIRAL----DRDGLLPCITFIFS 320
Query: 451 RRGCDAAVQYLEDC-----NLLDECEMSEV---------ELALKRFRILYPDAVREPAIK 496
R GC+AAV E C L E E+ EL + +L D+ RE
Sbjct: 321 RAGCEAAV---EQCLTGGIRLTTPAEAEEITSRVERMGWELPAEDLAVLGFDSFRE---- 373
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L+ GVAAHHAG LP +K +E+LF GL+KVVFATETLA GINMPART VL L K
Sbjct: 374 ALVHGVAAHHAGMLPPFKELVEDLFAEGLLKVVFATETLALGINMPARTVVLEKLDKFNG 433
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
+ +T E Q+ GRAGRRGID GH V+V P + L PL S F S
Sbjct: 434 EQHVDITPGEFTQLTGRAGRRGIDVEGHAVVVHQPGMDPRQVGGLASKRTYPLNSSFRPS 493
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELC 676
Y M +NL A Q GR E AR ++E SF + ++ ++
Sbjct: 494 YNMAVNLTA-----------------QFGR--ERARTILESSFAQFQADRSVVGLARDVS 534
Query: 677 K----IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 732
+ +Q + + + D A + RR +SE E+ +A+ R R +RR E
Sbjct: 535 QRESSLQGYHEAMQCHLGDFAEYAQLRRRISEL---------EKGQAKARNR---QRRRE 582
Query: 733 LKRFSA 738
L R A
Sbjct: 583 LTRVLA 588
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 3/159 (1%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 1067
G+ I GE +L+ ++ +L L A+LAA L+ + + + P+
Sbjct: 799 GQRLRRIYGERDLFTELLQHRGVLRGLDAAELAAFSTVLI---YQAKRDDEGAMPMMPTV 855
Query: 1068 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 1127
+ + + + L+++H V+ + + + AWASG + RE +MD L G
Sbjct: 856 RLGEAVRAAVDVHADLEALEKQHHVDPTPAPEMGLAPPMHAWASGRSLREALMDSPLAAG 915
Query: 1128 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
D R +++ID+L Q+ + P +L +A ++ R
Sbjct: 916 DFVRWAKQSIDVLDQLGRAPHTAAKLAARCQEAVELIGR 954
>gi|376242829|ref|YP_005133681.1| putative helicase [Corynebacterium diphtheriae CDCE 8392]
gi|372106071|gb|AEX72133.1| putative helicase [Corynebacterium diphtheriae CDCE 8392]
Length = 930
Score = 322 bits (825), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 219/608 (36%), Positives = 316/608 (51%), Gaps = 66/608 (10%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D+FQ +A G V+V APT +GKT++ E A ++ Q + FYTTP+
Sbjct: 14 FAARQKFPLDEFQIRGCQAVESGRGVLVCAPTGAGKTIVGEFAVSLAISQQTKCFYTTPI 73
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKF + + G++ VGLLTGD +INR+A I++MT E+LRNM+Y + L
Sbjct: 74 KALSNQKFHDLVKAHGEDKVGLLTGDVSINRDADIVVMTAEVLRNMIY------ADSEAL 127
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ +V+DE+H+LSD SRG VWEE I+ V +I LSATV+N++E W+ + G T
Sbjct: 128 DRLSHVVMDEIHFLSDSSRGAVWEEAILGLDASVNVIGLSATVSNSEEFGRWLNTVRGDT 187
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL--SLNYLQLSTSEVKPY---- 383
E+I S RPVPL + + PL E G +N +L + L+ +T++ Y
Sbjct: 188 EIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLVEHIERLEGTTTDGTEYGRAQ 246
Query: 384 -KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
+ GG R R+ M S+N + H+ S A+ R D L L+ +DML
Sbjct: 247 LQAGGFRNRSR----AMGSDNRASRRSPHRRSDKH-RALSRP------DVLHILQEQDML 295
Query: 443 PAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE----------VELALKRFRILYPDAVR 491
PAI FIF+R GCDAA+ Q + +L E SE + + R+L R
Sbjct: 296 PAITFIFSRAGCDAALHQCMRSSLVLTTQEESEEISDIITAGVAGIPEEDLRLLEYRRWR 355
Query: 492 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
+ L++G AAHHAG LP ++ +E+LF +GLV+ VFATETLA GINMPART VL L
Sbjct: 356 Q----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFATETLALGINMPARTVVLEKL 411
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
K G LT + Q+ GRAGRRGID G+ V+ P + L PLVS
Sbjct: 412 VKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWAPAMDPGQVAGLASTRTYPLVS 471
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 671
F Y M +NLL K + E A +L+E+SF + ++
Sbjct: 472 TFAPGYNMSVNLL---------------KTI----GFEPAHRLLEKSFAQFQADGSVVDD 512
Query: 672 KDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEMANLQEELKAEKRFRTEL--- 727
+ +++ D LT ++ A D ++ + ++ E ++ EL E+R L
Sbjct: 513 IKAIESLEESVDQLTKQLH-AAFDSHNQGGAGDVDSFLEYIRIRRELTEEERKHKRLSIE 571
Query: 728 RRRMELKR 735
+R ME R
Sbjct: 572 QRDMETTR 579
Score = 45.8 bits (107), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 101/232 (43%), Gaps = 14/232 (6%)
Query: 938 RTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL 997
R+ ++K D + E+ ++ + K E + G + F RI N++ E +
Sbjct: 694 RSHPAHHWRKREDLARVGEQLVREQRMLEAAQRKVNEATDTLG-RTFDRIINLLAEYDYV 752
Query: 998 DIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRL 1055
+ + VI GE+ I E++L +A L+ I DL PA+LA V + E +
Sbjct: 753 EFHDGVPVITEEGESLCQIHNESDLLVAQCLKRGIWDDLDPAELAGVVSMCTFENRRETR 812
Query: 1056 WKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTW 1115
+ +++ E + + N + + +E + + ++ + + + F+ + WA+G
Sbjct: 813 GEPDAATEEMAKAMNNTVRIWEELSTD----ERRYRLPVTRYPEGGFALAMHQWAAGAPL 868
Query: 1116 REMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQRLQKNAVDA 1160
+ A L GD R R+ +DLL Q+ + +R + A+DA
Sbjct: 869 GYCIAAAAESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRRAARKAIDA 920
>gi|376287741|ref|YP_005160307.1| putative helicase [Corynebacterium diphtheriae BH8]
gi|371585075|gb|AEX48740.1| putative helicase [Corynebacterium diphtheriae BH8]
Length = 930
Score = 322 bits (825), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 219/608 (36%), Positives = 316/608 (51%), Gaps = 66/608 (10%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D+FQ +A G V+V APT +GKT++ E A ++ Q + FYTTP+
Sbjct: 14 FAARQKFPLDEFQIRGCQAVESGRGVLVCAPTGAGKTIVGEFAVSLAISQQTKCFYTTPI 73
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKF + + G++ VGLLTGD +INR+A I++MT E+LRNM+Y + L
Sbjct: 74 KALSNQKFHDLVKAHGEDKVGLLTGDVSINRDADIVVMTAEVLRNMIY------ADSEAL 127
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ +V+DE+H+LSD SRG VWEE I+ V +I LSATV+N++E W+ + G T
Sbjct: 128 DRLSHVVMDEIHFLSDSSRGAVWEEAILGLDASVNVIGLSATVSNSEEFGRWLNTVRGDT 187
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKL--SLNYLQLSTSEVKPY---- 383
E+I S RPVPL + + PL E G +N +L + L+ +T++ Y
Sbjct: 188 EIIVSENRPVPLNQWMLVARRMHPLF-EPGTTGEVNSRLVEHIERLEGTTTDGTEYGRAQ 246
Query: 384 -KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
+ GG R R+ M S+N + H+ S A+ R D L L+ +DML
Sbjct: 247 LQAGGFRNRSR----AMGSDNRASRRSPHRRSDKH-RALSRP------DVLHILQEQDML 295
Query: 443 PAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE----------VELALKRFRILYPDAVR 491
PAI FIF+R GCDAA+ Q + +L E SE + + R+L R
Sbjct: 296 PAITFIFSRAGCDAALHQCMRSSLVLTTQEESEEISDIITAGVAGIPEEDLRLLEYRRWR 355
Query: 492 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
+ L++G AAHHAG LP ++ +E+LF +GLV+ VFATETLA GINMPART VL L
Sbjct: 356 Q----ALMRGFAAHHAGMLPAFRHVVEKLFTKGLVRAVFATETLALGINMPARTVVLEKL 411
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
K G LT + Q+ GRAGRRGID G+ V+ P + L PLVS
Sbjct: 412 VKFNGEGHADLTPGQYTQLTGRAGRRGIDVIGNAVVQWAPAMDPGQVAGLASTRTYPLVS 471
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 671
F Y M +NLL K + E A +L+E+SF + ++
Sbjct: 472 TFAPGYNMSVNLL---------------KTI----GFEPAHRLLEKSFAQFQADGSVVDD 512
Query: 672 KDELCKIQKETDVLTSEISDDAIDRKSRRLLSEA-AYKEMANLQEELKAEKRFRTEL--- 727
+ +++ D LT ++ A D ++ + ++ E ++ EL E+R L
Sbjct: 513 IKAIESLEESVDQLTKQLH-AAFDSHNQGGAGDVDSFLEYIRIRRELTEEERKHKRLSIE 571
Query: 728 RRRMELKR 735
+R ME R
Sbjct: 572 QRDMETTR 579
Score = 45.8 bits (107), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 100/232 (43%), Gaps = 14/232 (6%)
Query: 938 RTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL 997
R+ ++K D + E+ ++ + K E + G + F RI N++ E +
Sbjct: 694 RSHPAHHWRKREDLARVGEQLVREQRMLEAAQRKVNEATDTLG-RTFDRIINLLAEYDYV 752
Query: 998 DIN--TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRL 1055
+ + VI GE I E++L +A L+ I DL PA+LA V + E +
Sbjct: 753 EFHDGVPVITEEGENLCQIHNESDLLVAQCLKRGIWDDLDPAELAGVVSMCTFENRRETR 812
Query: 1056 WKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTW 1115
+ +++ E + + N + + +E S + ++ + I + F+ + WA+G
Sbjct: 813 GEPDAATEEMAKAMNNTVRIWEELSSD----ERRYRLPITRYPEGGFALAMHQWAAGAPL 868
Query: 1116 REMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLP--DVDQRLQKNAVDA 1160
+ + L GD R R+ +DLL Q+ + +R + A+DA
Sbjct: 869 GYCIAAASESGAELTPGDFVRQCRQVVDLLEQVRSTAYNNDTRRAARKAIDA 920
>gi|332670459|ref|YP_004453467.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
ATCC 484]
gi|332339497|gb|AEE46080.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
Length = 937
Score = 322 bits (825), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 197/517 (38%), Positives = 280/517 (54%), Gaps = 56/517 (10%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + A RGS V+V+APT +GKT++ E A ++ R+ FYTTP+KALSNQ
Sbjct: 35 FPLDDFQADACAALERGSGVLVAAPTGAGKTVVGEFAVHLALSAGRKAFYTTPIKALSNQ 94
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + +G + VGLLTGD+ IN +A +++MTTE+LRNMLY + L + +
Sbjct: 95 KYADLVRRYGPDRVGLLTGDTTINGDAPVVVMTTEVLRNMLY------AGSPTLLGLGFV 148
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVHYL+D RG VWEE+II+ P +VQ++ LSATV+NA+E W+ + G T ++ S
Sbjct: 149 VMDEVHYLADRFRGPVWEEVIIHLPDDVQLVSLSATVSNAEEFGDWLATVRGDTAVVVSE 208
Query: 338 RRPVPLTWYFSTKTALLPL----LDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 393
RPVPL + + LL L +D ++ ++ + +QL RR
Sbjct: 209 HRPVPLGQHVLVRGDLLDLYAGHVDPTDPGVDPPINPDLVQLL-------------RRTD 255
Query: 394 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD-MLPAIWFIFNRR 452
+ + + R + V+D L RD +LPAI FIF+R
Sbjct: 256 GPPVRRGPGDRGYRGRGGHRPGSGVG--RPTPRFAVVDAL----DRDGLLPAIVFIFSRA 309
Query: 453 GCDAAVQ--YLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPA----IKGLLKGVAAH 505
GC+ AVQ L D E + + + +R + P+ + ++ L +GVAAH
Sbjct: 310 GCEGAVQQCLAAGVRLTDPAEQATIRRVVEERCAAVPPEDLDVLGYWDLLEALTRGVAAH 369
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP++K +E+LF RGLVKVVFATETLA GINMPAR+ VL L K S + +T
Sbjct: 370 HAGMLPLFKETVEDLFSRGLVKVVFATETLALGINMPARSVVLEKLVKWDGSNHVDVTPG 429
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E Q+ GRAGRRGID GH V+V P + L + PL S F +Y M +NL+A
Sbjct: 430 EYTQLTGRAGRRGIDTEGHAVVVAHPGLDPVQLAGLASKRLYPLRSSFRPTYNMSVNLVA 489
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
Q GR+ AR+++E SF +
Sbjct: 490 -----------------QVGRA--RAREVLETSFAQF 507
Score = 45.8 bits (107), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 9/194 (4%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETR--ALDINTQVIFPLGETAAAI 1014
E+ +RL+ L +RIE S F RI +V+ A + + G+ +
Sbjct: 720 ERWERLRGEHDALVRRIEGRTGSIAVVFDRICDVLARLGYVARTDDGLAVTDDGQWLRRL 779
Query: 1015 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 1074
EN+L LA LR + +L P QLAA ++LV + ++ P +
Sbjct: 780 YAENDLLLAECLRRGLWDELDPPQLAAAVSTLVYRSRR----EDQGEPRVPGGPASRLGV 835
Query: 1075 VLDEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLAR 1131
LD ++ EL++ + +E LD V W++G + ++ L GD R
Sbjct: 836 ALDATVRAWSELEDLEAANRLETTVPLDLGLVEAVHRWSAGRSLDAVLRGAELSAGDFVR 895
Query: 1132 LLRRTIDLLAQIPK 1145
++ ID+L Q+ K
Sbjct: 896 WCKQVIDVLDQVAK 909
>gi|336320860|ref|YP_004600828.1| DEAD/DEAH box helicase domain protein [[Cellvibrio] gilvus ATCC
13127]
gi|336104441|gb|AEI12260.1| DEAD/DEAH box helicase domain protein [[Cellvibrio] gilvus ATCC
13127]
Length = 964
Score = 322 bits (825), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 205/567 (36%), Positives = 294/567 (51%), Gaps = 72/567 (12%)
Query: 114 SSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLR 173
++ P+P+ R +R ++ E+ F ++ FR+D FQ + A R
Sbjct: 27 AASDEPSPAERYAASRRRAQEDSGELGRFREQL----------GFRLDAFQIEACVALER 76
Query: 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGL 233
GS V+V+APT +GKT++ E A + R+ FYTTP+KALSNQK+ + +G + VGL
Sbjct: 77 GSGVLVAAPTGAGKTVVGEFAVHLALQAGRKAFYTTPIKALSNQKYTDLVRRYGSSQVGL 136
Query: 234 LTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTV 293
LTGD+ +N EA +++MTTE+LRNMLY + + L + +V+DEVHYL+D RG V
Sbjct: 137 LTGDTTVNSEAPVVVMTTEVLRNMLY------AGSATLAGLGFVVMDEVHYLADRFRGPV 190
Query: 294 WEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTAL 353
WEE+II+ P +VQ++ LSATV+NA+E W+ + G T ++ S RPVPL + L
Sbjct: 191 WEEVIIHLPDDVQLVSLSATVSNAEEFGDWLATVRGDTTVVVSEHRPVPLGQHVLVNGDL 250
Query: 354 LPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHAD-------MNSNNIVT 406
L L ++ + V P + RR +R+ D
Sbjct: 251 L------------DLYAGHVDPTDPGVDPPINPDLRRLLARRGEDERRGPGDRGYRGGGG 298
Query: 407 SFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDC 464
+R + V+D L +LPAI FIF+R GC+AAVQ
Sbjct: 299 RRPGAGARGAPGGGVRTTPRFAVVDL---LDREGLLPAIVFIFSRAGCEAAVQQCLAAGV 355
Query: 465 NLLDECEMSEVELAL-KRFRILYPDAVREPA----IKGLLKGVAAHHAGCLPIWKSFIEE 519
L E +E+ + + +R + P+ + L +GVA+HHAG LP++K +E+
Sbjct: 356 RLTSPAEQAEIRMIVEERCAAVPPEDLDVLGYWELADALTRGVASHHAGMLPLFKETVED 415
Query: 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 579
LF RGLVKVVFATETLA GINMPAR+ VL L K S + +T E Q+ GRAGRRGI
Sbjct: 416 LFSRGLVKVVFATETLALGINMPARSVVLEKLVKWDGSRHVDVTPGEYTQLTGRAGRRGI 475
Query: 580 DNRGHVVLVQ----TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNE 635
D GH V++ P + A K L+ PL S F +Y M +NL+A
Sbjct: 476 DVEGHAVVLAHQGLDPVQLAGLASKRLY----PLRSSFRPTYNMAVNLVA---------- 521
Query: 636 SDDMKALQAGRSLEEARKLVEQSFGNY 662
Q GR E AR+++E SF +
Sbjct: 522 -------QVGR--ERAREVLETSFAQF 539
>gi|357393593|ref|YP_004908434.1| putative ATP-dependent helicase [Kitasatospora setae KM-6054]
gi|311900070|dbj|BAJ32478.1| putative ATP-dependent helicase [Kitasatospora setae KM-6054]
Length = 967
Score = 322 bits (825), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 199/518 (38%), Positives = 275/518 (53%), Gaps = 50/518 (9%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + G V+V+APT SGKT++ E A +A R+ FYTTP+KAL
Sbjct: 56 LYDFPLDDFQLRACRTLEEGKGVLVAAPTGSGKTIVGEFAVHLALAGGRKCFYTTPIKAL 115
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + + +G VGLLTGD+++N +A +++MTTE+LRNMLY + S L +
Sbjct: 116 SNQKYGDLVKRYGQAKVGLLTGDNSVNGDAPVVVMTTEVLRNMLY------AGSSALDGL 169
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYL+D RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 170 GYVVMDEVHYLADRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGGTEVI 229
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL-NYLQLSTSEVKPYKDGGSRRRNS 393
S RPVPL + + L + K SL N + E+ R +
Sbjct: 230 VSEHRPVPLWQHVMAGNRMYDLFASPDRDGRPKGSLKNPAKAVNPELV---------RLA 280
Query: 394 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV--PQVIDTLWHLRSRDMLPAIWFIFNR 451
R AD + G+ S+ A R +V P +D + L + +LPAI FIF+R
Sbjct: 281 RSEADRGRDRFARGRGR------SMPAGRPGRVWTPSRVDVIDRLDAEGLLPAITFIFSR 334
Query: 452 RGCDAAVQYLEDCNL---LDECEMSEVELALKRFRILYPDAVREPA----IKGLLKGVAA 504
GC+AAVQ L D + +R R + + + + GL +G+AA
Sbjct: 335 AGCEAAVQQCLHSGLRLNRDADRFKVRQFVEERCRDIPDEDLHVLGYYEWLDGLERGIAA 394
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HHAG LP +K +EELF +GLVK VFATETLA GINMPAR+ V+ L K +T
Sbjct: 395 HHAGMLPRFKEVVEELFVQGLVKAVFATETLALGINMPARSVVMEKLVKWNGETHADITP 454
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E Q+ GRAGRRGID GH V++ E L PL S F SY M +NL+
Sbjct: 455 GEYTQLTGRAGRRGIDIEGHAVVLWQRGLDPEALAGLAGTRTYPLKSSFRPSYNMAVNLV 514
Query: 625 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
Q GR +R+L+E SF +
Sbjct: 515 G-----------------QFGR--HRSRELLETSFAQF 533
>gi|291300653|ref|YP_003511931.1| DEAD/DEAH box helicase [Stackebrandtia nassauensis DSM 44728]
gi|290569873|gb|ADD42838.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
DSM 44728]
Length = 919
Score = 322 bits (825), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 196/482 (40%), Positives = 263/482 (54%), Gaps = 44/482 (9%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+ +S F +D FQ + + RGS V+V APT +GKT++ E A ++ R+ FYTTP
Sbjct: 39 DFSSRLSFDLDDFQIEACQGLERGSGVLVCAPTGAGKTIVGEFAVHLALSKGRKCFYTTP 98
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQKF + G + VGLLTGD+ IN EA +++MTTE+LRNMLY + +
Sbjct: 99 IKALSNQKFHDLVAVHGADKVGLLTGDTVINGEAPVVVMTTEVLRNMLY------ARSAT 152
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DEVHYL+D RG VWEE+II+ P V ++ LSATV+NA+E A W+ + G
Sbjct: 153 LEGLGFVVMDEVHYLADRFRGAVWEEVIIHLPASVSLVSLSATVSNAEEFADWLVSLRGH 212
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
TE++ S RPVPL + L L +G +EV P
Sbjct: 213 TEVVVSEHRPVPLWQHIMVGRRLFDLFATEGD-------------DRTEVHP-----QLM 254
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
R+ R+ + +L + +RR + P D + L S +LPAI FIF+
Sbjct: 255 RHIREQ-------------ERRLGYDRRGRMRRPRPPYRSDVIAKLDSEALLPAIVFIFS 301
Query: 451 RRGCDAAVQ--YLEDCNLLDECEMSEV-ELALKRFRILYPDAVRE----PAIKGLLKGVA 503
R CDAAV L+ L D E +E+ +A R + + P + GL +G+A
Sbjct: 302 RAACDAAVSQCLLDGLRLTDPGEEAEIARVANARVAHISTSDLNALGYYPFLDGLQRGLA 361
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
AHHAG LP++K +EELF GLVKVVFATETLA GINMPART VL L K + LT
Sbjct: 362 AHHAGLLPVFKEIVEELFAAGLVKVVFATETLALGINMPARTVVLERLVKYNGEEHVDLT 421
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E Q+ GRAGRRGID GH V + L PL S F+ SY M +NL
Sbjct: 422 PGEYTQLTGRAGRRGIDIEGHAVTIWGADVDPRHVAGLASTRTYPLNSSFSPSYNMAINL 481
Query: 624 LA 625
+A
Sbjct: 482 IA 483
Score = 40.0 bits (92), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 93/217 (42%), Gaps = 11/217 (5%)
Query: 960 KRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENE 1019
+RL + +RL ++ + S + F R+ +++ + I + + G + I E++
Sbjct: 708 QRLLSDYERLQTKVNRRSGSLARTFDRVRDMLSDYGY--IASGTVTDAGRVLSRIWSESD 765
Query: 1020 LWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 1079
L +A +R + L +LAAV + ++ E + + S P V + +
Sbjct: 766 LLVAECVREGVWDGLSAPELAAVASIVLYESRR----DADMSPALPKGNVASAVAATLRR 821
Query: 1080 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-----DCALDDGDLARLLR 1134
+ + +HG+ + D F + WA G +++ D ++ GD R R
Sbjct: 822 FDAIHADESRHGLSLTGEPDLGFVWPMYRWARGEPLAKVLAAGDGPDGSMPAGDFVRWAR 881
Query: 1135 RTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 1171
+TIDLL Q+ L A+ A++ + R +++
Sbjct: 882 QTIDLLGQLASAAGPSSPLYSTALAAADAVRRGVVAD 918
>gi|365870077|ref|ZP_09409621.1| ATP-dependent DNA helicase HelY [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|363997266|gb|EHM18478.1| ATP-dependent DNA helicase HelY [Mycobacterium massiliense CCUG
48898 = JCM 15300]
Length = 914
Score = 322 bits (825), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 209/544 (38%), Positives = 284/544 (52%), Gaps = 50/544 (9%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + A G V+V APT +GKT++ E A +A R+ FYTTP+KALSNQ
Sbjct: 10 FALDPFQVRACTALENGHGVLVCAPTGAGKTIVGEFAVHLALAAGRKCFYTTPIKALSNQ 69
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K + +G VGLLTGDS+IN +A +++MTTE+LRNMLY + L + +
Sbjct: 70 KHNDLVSVYGPEKVGLLTGDSSINSDAPVVVMTTEVLRNMLY------ADSPALHGLSYV 123
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVH+L+D RG VWEE+I++ P++V + LSATV+NA+E GWI + G T ++
Sbjct: 124 VMDEVHFLADRFRGAVWEEVILHLPEDVALASLSATVSNAEEFGGWIKTVRGDTTVVVDE 183
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP-YKDGGSRRRNSRKH 396
RPVPL + L L D + + R+ S + S+V P ++RR + +
Sbjct: 184 TRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG--TGNPSQVDPDLTRYIAQRRQADRF 240
Query: 397 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
AD + Q + R P+VI L +LPAI FIF+R GCD
Sbjct: 241 ADFDRPRRRGPQ---QRTSRPPTLYRPPSRPEVIT---RLDEDGLLPAITFIFSRAGCDG 294
Query: 457 AV-QYLED-CNLLDECEMSEVELALKRFRILYPDAV---------REPAIKGLLKGVAAH 505
AV Q L L E E E+ + R P+A RE GLL+G+AAH
Sbjct: 295 AVAQCLRSRLRLTTEEERREIVAIIDRRTEGLPEADLDVLGYWQWRE----GLLRGIAAH 350
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP+++ +EELF +GLVK VFATETLA GINMPART VL L K LT
Sbjct: 351 HAGMLPVFRHTVEELFTKGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHAALTPG 410
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E Q+ GRAGRRGID GH V++ TP E L PL S F SY M +NL
Sbjct: 411 EYTQLTGRAGRRGIDVEGHAVVLWTPEVEPTEIAGLASTRTFPLRSSFAPSYNMTINL-- 468
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 685
+H + AR+L+E+SF Y ++ + + +K D +
Sbjct: 469 ----VHRMGPA-------------PARELLERSFAQYQADRSVVGLVRGIERGRKMLDEI 511
Query: 686 TSEI 689
E+
Sbjct: 512 AGEL 515
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 18/208 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETAAA 1013
E+ R++ + +L K++ S + F RI ++ E ++ + ++ + G A
Sbjct: 693 ERYLRIERDNAQLQKKVAAATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLLAR 752
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
I E++L +A LR + LKPA+LAAV ++++ E S+ E T +
Sbjct: 753 IYSESDLLVAECLRRGLWAGLKPAELAAVASAVLYES----RGDTVSATGEAPTAALR-- 806
Query: 1074 NVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCALD 1125
L E + L +++H + +D F V WA+ + AL
Sbjct: 807 GALAETHRALARLRRDEQQHHLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTALP 866
Query: 1126 DGDLARLLRRTIDLLAQIPK-LPDVDQR 1152
GD R R+ +DLL QI K PD + R
Sbjct: 867 AGDFVRWCRQVVDLLDQIHKAAPDAEVR 894
>gi|414580420|ref|ZP_11437561.1| putative helicase helY [Mycobacterium abscessus 5S-1215]
gi|420877509|ref|ZP_15340878.1| putative helicase helY [Mycobacterium abscessus 5S-0304]
gi|420882782|ref|ZP_15346145.1| putative helicase helY [Mycobacterium abscessus 5S-0421]
gi|420889027|ref|ZP_15352379.1| putative helicase helY [Mycobacterium abscessus 5S-0422]
gi|420893590|ref|ZP_15356932.1| putative helicase helY [Mycobacterium abscessus 5S-0708]
gi|420898727|ref|ZP_15362062.1| putative helicase helY [Mycobacterium abscessus 5S-0817]
gi|420904657|ref|ZP_15367976.1| putative helicase helY [Mycobacterium abscessus 5S-1212]
gi|420971456|ref|ZP_15434651.1| putative helicase helY [Mycobacterium abscessus 5S-0921]
gi|421048973|ref|ZP_15511969.1| putative helicase helY [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|421052065|ref|ZP_15515059.1| putative helicase helY [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|392089000|gb|EIU14820.1| putative helicase helY [Mycobacterium abscessus 5S-0304]
gi|392089752|gb|EIU15568.1| putative helicase helY [Mycobacterium abscessus 5S-0421]
gi|392090658|gb|EIU16470.1| putative helicase helY [Mycobacterium abscessus 5S-0422]
gi|392102180|gb|EIU27967.1| putative helicase helY [Mycobacterium abscessus 5S-0708]
gi|392106436|gb|EIU32221.1| putative helicase helY [Mycobacterium abscessus 5S-0817]
gi|392107122|gb|EIU32905.1| putative helicase helY [Mycobacterium abscessus 5S-1212]
gi|392120244|gb|EIU46011.1| putative helicase helY [Mycobacterium abscessus 5S-1215]
gi|392168167|gb|EIU93846.1| putative helicase helY [Mycobacterium abscessus 5S-0921]
gi|392240668|gb|EIV66161.1| putative helicase helY [Mycobacterium massiliense CCUG 48898]
gi|392243138|gb|EIV68625.1| putative helicase helY [Mycobacterium massiliense CCUG 48898]
Length = 922
Score = 322 bits (825), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 209/544 (38%), Positives = 284/544 (52%), Gaps = 50/544 (9%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + A G V+V APT +GKT++ E A +A R+ FYTTP+KALSNQ
Sbjct: 18 FALDPFQVRACTALENGHGVLVCAPTGAGKTIVGEFAVHLALAAGRKCFYTTPIKALSNQ 77
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K + +G VGLLTGDS+IN +A +++MTTE+LRNMLY + L + +
Sbjct: 78 KHNDLVSVYGPEKVGLLTGDSSINSDAPVVVMTTEVLRNMLY------ADSPALHGLSYV 131
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVH+L+D RG VWEE+I++ P++V + LSATV+NA+E GWI + G T ++
Sbjct: 132 VMDEVHFLADRFRGAVWEEVILHLPEDVALASLSATVSNAEEFGGWIKTVRGDTTVVVDE 191
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP-YKDGGSRRRNSRKH 396
RPVPL + L L D + + R+ S + S+V P ++RR + +
Sbjct: 192 TRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG--TGNPSQVDPDLTRYIAQRRQADRF 248
Query: 397 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
AD + Q + R P+VI L +LPAI FIF+R GCD
Sbjct: 249 ADFDRPRRRGPQ---QRTSRPPTLYRPPSRPEVIT---RLDEDGLLPAITFIFSRAGCDG 302
Query: 457 AV-QYLED-CNLLDECEMSEVELALKRFRILYPDAV---------REPAIKGLLKGVAAH 505
AV Q L L E E E+ + R P+A RE GLL+G+AAH
Sbjct: 303 AVAQCLRSRLRLTTEEERREIVAIIDRRTEGLPEADLDVLGYWQWRE----GLLRGIAAH 358
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP+++ +EELF +GLVK VFATETLA GINMPART VL L K LT
Sbjct: 359 HAGMLPVFRHTVEELFTKGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHAALTPG 418
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E Q+ GRAGRRGID GH V++ TP E L PL S F SY M +NL
Sbjct: 419 EYTQLTGRAGRRGIDVEGHAVVLWTPEVEPTEIAGLASTRTFPLRSSFAPSYNMTINL-- 476
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 685
+H + AR+L+E+SF Y ++ + + +K D +
Sbjct: 477 ----VHRMGPA-------------PARELLERSFAQYQADRSVVGLVRGIERGRKMLDEI 519
Query: 686 TSEI 689
E+
Sbjct: 520 AGEL 523
Score = 42.7 bits (99), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 18/208 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETAAA 1013
E+ R++ + +L K++ S + F RI ++ E ++ + ++ + G A
Sbjct: 701 ERYLRIERDNAQLQKKVAAATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLLAR 760
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
I E++L +A LR + LKPA+LAAV ++++ E S+ E T +
Sbjct: 761 IYSESDLLVAECLRRGLWAGLKPAELAAVASAVLYES----RGDTVSATGEAPTAALR-- 814
Query: 1074 NVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCALD 1125
L E + L +++H + +D F V WA+ + AL
Sbjct: 815 GALAETHRALARLRRDEQQHHLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTALP 874
Query: 1126 DGDLARLLRRTIDLLAQIPK-LPDVDQR 1152
GD R R+ +DLL QI K PD + R
Sbjct: 875 AGDFVRWCRQVVDLLDQIHKAAPDAEVR 902
>gi|397679376|ref|YP_006520911.1| helicase helY [Mycobacterium massiliense str. GO 06]
gi|395457641|gb|AFN63304.1| putative helicase helY [Mycobacterium massiliense str. GO 06]
Length = 960
Score = 322 bits (825), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 209/544 (38%), Positives = 284/544 (52%), Gaps = 50/544 (9%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + A G V+V APT +GKT++ E A +A R+ FYTTP+KALSNQ
Sbjct: 56 FALDPFQVRACTALENGHGVLVCAPTGAGKTIVGEFAVHLALAAGRKCFYTTPIKALSNQ 115
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K + +G VGLLTGDS+IN +A +++MTTE+LRNMLY + L + +
Sbjct: 116 KHNDLVSVYGPEKVGLLTGDSSINSDAPVVVMTTEVLRNMLY------ADSPALHGLSYV 169
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVH+L+D RG VWEE+I++ P++V + LSATV+NA+E GWI + G T ++
Sbjct: 170 VMDEVHFLADRFRGAVWEEVILHLPEDVALASLSATVSNAEEFGGWIKTVRGDTTVVVDE 229
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP-YKDGGSRRRNSRKH 396
RPVPL + L L D + + R+ S + S+V P ++RR + +
Sbjct: 230 TRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG--TGNPSQVDPDLTRYIAQRRQADRF 286
Query: 397 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
AD + Q + R P+VI L +LPAI FIF+R GCD
Sbjct: 287 ADFDRPRRRGPQ---QRTSRPPTLYRPPSRPEVIT---RLDEDGLLPAITFIFSRAGCDG 340
Query: 457 AV-QYLED-CNLLDECEMSEVELALKRFRILYPDAV---------REPAIKGLLKGVAAH 505
AV Q L L E E E+ + R P+A RE GLL+G+AAH
Sbjct: 341 AVAQCLRSRLRLTTEEERREIVAIIDRRTEGLPEADLDVLGYWQWRE----GLLRGIAAH 396
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP+++ +EELF +GLVK VFATETLA GINMPART VL L K LT
Sbjct: 397 HAGMLPVFRHTVEELFTKGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHAALTPG 456
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E Q+ GRAGRRGID GH V++ TP E L PL S F SY M +NL
Sbjct: 457 EYTQLTGRAGRRGIDVEGHAVVLWTPEVEPTEIAGLASTRTFPLRSSFAPSYNMTINL-- 514
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 685
+H + AR+L+E+SF Y ++ + + +K D +
Sbjct: 515 ----VHRMGPA-------------PARELLERSFAQYQADRSVVGLVRGIERGRKMLDEI 557
Query: 686 TSEI 689
E+
Sbjct: 558 AGEL 561
Score = 41.2 bits (95), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 22/210 (10%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETAAA 1013
E+ R++ + +L +++ S + F RI ++ E ++ + ++ + G A
Sbjct: 739 ERYLRIERDNAQLQRKVAAATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLLAR 798
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLV--SEGIKVRLWKNNSSIYEPSTTVIN 1071
I E++L +A LR + LKPA+LAAV ++++ S G V S+ E T +
Sbjct: 799 IYSESDLLVAECLRRGLWAGLKPAELAAVASAVLYESRGDTV------SATGEAPTAALR 852
Query: 1072 VINVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCA 1123
L E + L +++H + +D F V WA+ + A
Sbjct: 853 --GALAETHRALARLRRDEQQHHLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTA 910
Query: 1124 LDDGDLARLLRRTIDLLAQIPK-LPDVDQR 1152
L GD R R+ +DLL QI K PD + R
Sbjct: 911 LPAGDFVRWCRQVVDLLDQIHKAAPDAEVR 940
>gi|377567972|ref|ZP_09797172.1| putative helicase [Gordonia terrae NBRC 100016]
gi|377534813|dbj|GAB42337.1| putative helicase [Gordonia terrae NBRC 100016]
Length = 935
Score = 322 bits (824), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 205/567 (36%), Positives = 296/567 (52%), Gaps = 61/567 (10%)
Query: 146 MIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205
M +D S FR+D FQ + EA G V+V APT +GKT++ E A +A +
Sbjct: 1 MTQLDSFTSRLAFRLDAFQLRACEALEGGHGVLVCAPTGAGKTIVGEFAVHLALAGGTKC 60
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
FYTTP+KALSNQK+ + G +VGLLTGDS+IN +A +++MTTE++RNM+Y
Sbjct: 61 FYTTPIKALSNQKYNDLVAVHGSESVGLLTGDSSINPDAPVVVMTTEVVRNMIY------ 114
Query: 266 SSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
+ES D + +V+DEVH+L+D RG VWEE+I++ V+++ LSATV+NA+E WI
Sbjct: 115 -AESRALDGLSHVVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLSATVSNAEEFGDWI 173
Query: 325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 384
+ G T +I RPVPL+ + L L D ++ P +
Sbjct: 174 QTVRGDTSVIVDEHRPVPLSQHMLVGQRLFDLFDP------------------ADTGPAR 215
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI-------DTLWHLR 437
G+R R + + + I+ + + + ++ + + + L
Sbjct: 216 KAGTRPRVNPELKRQIRHRILMADDERESARGRGRGRGSGPRRRGRGPALSRPNLVTRLD 275
Query: 438 SRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRI-LYPDAVREPA 494
+LPAI FIF+R GCDAA+ Q L +LL E+ EV+ + R L P +
Sbjct: 276 REALLPAIGFIFSRAGCDAALAQCLRSGLSLLTPAEIGEVDAIVDRHLTELSPTDLDVLG 335
Query: 495 I----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
+ +GL +G+A+HHAG LP ++ +EELF RGLV++VFATETLA GINMPAR+ VL
Sbjct: 336 VHEWREGLRRGLASHHAGMLPTFRHTVEELFVRGLVRMVFATETLALGINMPARSVVLER 395
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 610
L K + LT E Q+ GRAGRRGID GH V+V TP EE L A PL
Sbjct: 396 LVKYNGEAHVDLTPGEFTQLTGRAGRRGIDVEGHAVVVWTPEVVPEEVAGLAGARTFPLR 455
Query: 611 SQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGR-SLEEARKLVEQSFGNYVGSNVML 669
S F+ Y M +NLL GR L+ AR+L+ +SF + ++
Sbjct: 456 SSFSPEYNMAVNLL--------------------GRLGLDGARELLHRSFAQFQADRSVV 495
Query: 670 AAKDELCKIQKETDVLTSEISDDAIDR 696
+L + Q+ L E++ A R
Sbjct: 496 GQARKLDEAQRALRKLDGELARAAQAR 522
>gi|269795155|ref|YP_003314610.1| superfamily II RNA helicase [Sanguibacter keddieii DSM 10542]
gi|269097340|gb|ACZ21776.1| superfamily II RNA helicase [Sanguibacter keddieii DSM 10542]
Length = 972
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 228/672 (33%), Positives = 324/672 (48%), Gaps = 114/672 (16%)
Query: 118 SPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSV 177
P+P+ R + QR E +V F + DF +D FQ + A RG V
Sbjct: 24 GPSPAERYQQYRQRAELDSQQVSAFRQTL----------DFDLDDFQLEACAALERGHGV 73
Query: 178 VVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGD 237
+V+APT +GKT++ E A V R+ FYTTP+KALSNQK+ + +G +VGLLTGD
Sbjct: 74 LVAAPTGAGKTIVGEFAIHLAVTGGRKAFYTTPIKALSNQKYADLVARYGAEHVGLLTGD 133
Query: 238 SAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEI 297
+ IN EA +++MTTE+LRNMLY ++ L ++ +V+DEVHYL+D RG+VWEE+
Sbjct: 134 TTINGEAPVVVMTTEVLRNMLY------AASPTLDNLGFVVMDEVHYLADRFRGSVWEEV 187
Query: 298 IIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTA----- 352
II+ +VQ++ LSATV+NA+E W+ + G T ++ S RPVPLT + +
Sbjct: 188 IIHLAADVQLVSLSATVSNAEEFGDWLEMVRGDTTVVVSEHRPVPLTQHVAAARRGAAPG 247
Query: 353 -LLPL----LDEKGKHMNRKLSLNYLQL----------------STSEVKPYKDGGSRRR 391
L L +D N ++ + L L S GG R
Sbjct: 248 GLFDLYAHTVDPTAPGPNPPINPDLLALMRQGDSFRGGGGRGRGYRSARGQGGPGGRSRD 307
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
++R A F V+D L R +LPAI+FIF+R
Sbjct: 308 SARGSAGTTGRRGPARF-------------------TVVDELEQAR---LLPAIYFIFSR 345
Query: 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----------IKGLLK 500
GC+ AV L E EL ++ I+ P+ + L +
Sbjct: 346 AGCEGAVAQCVGSGL--RLTTPEQELTIRG--IVEARCANIPSEDLAVLGYWGWLDALTR 401
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+AAHHAG LP++K +EELF GLVK+VFATETLA GINMPAR+ VL L K S +
Sbjct: 402 GIAAHHAGMLPLFKETVEELFSAGLVKIVFATETLALGINMPARSVVLEKLVKWDGSSHV 461
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
LT E Q+ GRAGRRGID GH V+V P L + PL S F +Y M
Sbjct: 462 DLTPGEYTQLTGRAGRRGIDVEGHAVVVDHPGLDPVVLAGLASKRLYPLKSSFAPTYNMA 521
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
+NL++ Q GR E AR+++E SF + A + + K
Sbjct: 522 VNLVS-----------------QVGR--ERAREILETSFAQF-------QADRGVVGLAK 555
Query: 681 ETDVLTSEISDDAIDRKSRRLLSEAA-YKEMANLQEELKAEKRFRTELRRRMELKRFSAL 739
+ + S +A+D + +L E ++E L++ L A + EL +R +R S +
Sbjct: 556 Q-----AAASSEALDGYAEAMLCEQGDFREYMRLRKALSARE---AELSKRATNERRSEV 607
Query: 740 KDILKDFENGHL 751
L+ G L
Sbjct: 608 VRALESLRRGDL 619
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 15/188 (7%)
Query: 967 KRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQ---VIFPLGETAAAIRGENELWLA 1023
K L +RIE S K F RI +V+ L+ + V+ GE+ + E++L LA
Sbjct: 763 KALMRRIEGRTGSIAKVFDRICDVLRTLEYLERDEHGALVVTRAGESLKRLYAESDLLLA 822
Query: 1024 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHR--- 1080
LR + DL PA LAA +++V R + P + LDE
Sbjct: 823 ECLRRGVWDDLDPAGLAAAVSTVV---YSARRDDREEEPHVPGGPDGRLARALDETVRIW 879
Query: 1081 SSFLELQEKHGVEIPCCLDSQFSGMVEA---WASGLTWREMMMDCALDDGDLARLLRRTI 1137
S+ +L++ H +E LD G+VEA WASG + ++ L GD R ++ I
Sbjct: 880 SALDDLEDAHRLEATGPLDM---GLVEAMHRWASGRSLDVVLKGTDLAAGDFVRWCKQVI 936
Query: 1138 DLLAQIPK 1145
D+L Q+ K
Sbjct: 937 DVLGQLTK 944
>gi|302533509|ref|ZP_07285851.1| ATP-dependent RNA helicase [Streptomyces sp. C]
gi|302442404|gb|EFL14220.1| ATP-dependent RNA helicase [Streptomyces sp. C]
Length = 950
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 202/526 (38%), Positives = 283/526 (53%), Gaps = 63/526 (11%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+Y+F +D +Q + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 31 MYEFDLDPYQIEACKALEAGKGVLVAAPTGSGKTIVGEFAVHLALQQGRKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + + +G VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 91 SNQKYADLVKRYGAAKVGLLTGDNSVNGDAPVVVMTTEVLRNMLY------AGSQALSGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 145 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
S RPVPL + + L +E+ H R + EV P +R NSR
Sbjct: 205 VSEERPVPLWQHVMAGRRIYDLFEEESDHGGRGSA-------RREVNPDLLRMAREENSR 257
Query: 395 KHA--DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
++ D +V + + S + I P+VI L + ++LPAI FIF+R
Sbjct: 258 GYSPKDRRRGKMVRE-ADRERERRSRSRIWTPGRPEVIA---RLDNDELLPAINFIFSRA 313
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----PA-----------IK 496
GC+AAVQ +C + + L R+ + V E PA ++
Sbjct: 314 GCEAAVQ---------QCLYAGLRLNDDTARLRVREIVEERTASIPAEDLHVLGYYEWLE 364
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPART +L L K
Sbjct: 365 GLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARTVILEKLVKWNG 424
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
+T E Q+ GRAGRRGID GH V++ + L PL S F S
Sbjct: 425 EQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGMDPVQLAGLAGTRTYPLRSSFKPS 484
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
Y M +NL++ Q GR +R+L+E SF +
Sbjct: 485 YNMAVNLVS-----------------QFGR--HRSRELLETSFAQF 511
Score = 47.0 bits (110), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 12/193 (6%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 1015
E+ RLK +++L +RIE + + F RI ++ E LD + + G+ A +
Sbjct: 723 ERYHRLKRDTQQLERRIEGRTNTIARTFDRIHALLTE---LDYLREDEVTEHGKRLARLY 779
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 1075
GE +L + LR + L PA+LAA ++LV E R + + P+ +
Sbjct: 780 GELDLLASECLREGVWEGLNPAELAACVSALVFE---ARQSDDAAPPKVPNGAAKTALGE 836
Query: 1076 LDEHRSSFLELQEKHGVEIPCCL-----DSQFSGMVEAWASGLTWREMMMDCALDDGDLA 1130
+ L+E+H + + D F+ WAS + E++ + + GD
Sbjct: 837 MVRIWGRLDALEEEHRINQAEGVGQREPDLGFAWAAYQWASDKSLDEVLREAEMPAGDFV 896
Query: 1131 RLLRRTIDLLAQI 1143
R ++ ID+L QI
Sbjct: 897 RWCKQVIDVLGQI 909
>gi|404256704|ref|ZP_10960036.1| putative helicase [Gordonia namibiensis NBRC 108229]
gi|403404779|dbj|GAB98445.1| putative helicase [Gordonia namibiensis NBRC 108229]
Length = 942
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 211/560 (37%), Positives = 298/560 (53%), Gaps = 51/560 (9%)
Query: 146 MIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205
M +D S DF +D FQR + EA G V+V APT +GKT++ E A +A +
Sbjct: 1 MSQLDAFTSRLDFGLDPFQRRACEALEAGHGVLVCAPTGAGKTIVGEFAVHLALAGGTKC 60
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
FYTTP+KALSNQK+ + G +VGLLTGDS+IN +A I++MTTE++RNM+Y
Sbjct: 61 FYTTPIKALSNQKYADLAAVHGHESVGLLTGDSSINPDAPIVVMTTEVVRNMIY------ 114
Query: 266 SSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
+ES D + +V+DEVH+L+D RG VWEE+I++ V+++ LSATV+NA+E WI
Sbjct: 115 -AESRALDGLSHVVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLSATVSNAEEFGDWI 173
Query: 325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKH-MNRKLSLNYLQLSTSEVKPY 383
+ G T +I RPVPL+ + + L D + +RK S V P
Sbjct: 174 QTVRGDTSVIVDEHRPVPLSQHMLVGQRMFDLFDPADRDPADRK-------GSRPRVNP- 225
Query: 384 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDM 441
+R+ R + + +S G+ + R + P + + + L +
Sbjct: 226 ----ELKRHIRHRILLAEDERESSRGRGRRGGGGQPRRRDGRGPLLSRPNLVGRLDREGL 281
Query: 442 LPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELAL-KRFRILYPDAVREPAIK-- 496
LPAI FIF+R GCDAA+ Q L LL E +EV+ + +R L P ++
Sbjct: 282 LPAIGFIFSRAGCDAALAQCLRSGIALLTPEEAAEVDAVVDRRLTELSPTDADVLGVQEW 341
Query: 497 --GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554
GL +G+A+HHAG LP ++ +EELF RGLV++VFATETLA GINMPAR+ VL L K
Sbjct: 342 REGLRRGLASHHAGMLPTFRHAVEELFVRGLVRMVFATETLALGINMPARSVVLERLVKY 401
Query: 555 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 614
+ LT E Q+ GRAGRRGID GH V+V TP EE L A PL S F+
Sbjct: 402 NGESHVDLTPGEFTQLTGRAGRRGIDVEGHAVVVWTPEVVPEEVAGLAGARTFPLRSSFS 461
Query: 615 ASYGMVLNLLAGAKVMHLSNESDDMKALQAGR-SLEEARKLVEQSFGNYVGSNVMLAAKD 673
Y M +NLL GR L+ AR+L+ +SF + ++
Sbjct: 462 PEYNMAVNLL--------------------GRLGLDGARELLHRSFAQFQADRSVVGLAR 501
Query: 674 ELCKIQKETDVLTSEISDDA 693
+L + Q+ L E++ A
Sbjct: 502 KLHESQRALRKLDGELARAA 521
>gi|329939077|ref|ZP_08288451.1| helicase [Streptomyces griseoaurantiacus M045]
gi|329301962|gb|EGG45855.1| helicase [Streptomyces griseoaurantiacus M045]
Length = 953
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 218/613 (35%), Positives = 317/613 (51%), Gaps = 75/613 (12%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 49 MYDFGLDPFQIEACRALESGKGVLVAAPTGSGKTIVGEFAFHLALEQGRKCFYTTPIKAL 108
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +G VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 109 SNQKYADLCRRYGSGKVGLLTGDNSVNSDAPVVVMTTEVLRNMLY------AGSQTLTGL 162
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 163 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 222
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGSRRRN 392
S RPVPL + + L +E G+ + ++ + +L+ +E +P Y+D R+
Sbjct: 223 VSEHRPVPLFQHVLAGRRMYDLFEE-GEGQKKAVNPDLTRLARTEAARPLYRD----RKR 277
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R + + + S + + P+VI+ L + +LPAI FIF+R
Sbjct: 278 GRAMREADRER----------DRRSRSRVWTPGRPEVIE---RLDAAGLLPAITFIFSRA 324
Query: 453 GCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA--------IKGLLKGV 502
GC++AVQ L DE EV ++ P RE ++GL +G+
Sbjct: 325 GCESAVQQCLYAGLRLNDEDAREEVRALVEERTASIP---REDLHVLGYYEWLEGLERGI 381
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +
Sbjct: 382 AAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADI 441
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
T E Q+ GRAGRRGID GH V++ E L PL S F SY M +N
Sbjct: 442 TPGEYTQLTGRAGRRGIDVEGHAVVLWQRGMSPEHLAGLAGTRTYPLRSSFRPSYNMAVN 501
Query: 623 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKET 682
L+ Q GR +R+L+E SF + ++ ++ + ++
Sbjct: 502 LVE-----------------QFGR--HRSRELLETSFAQFQADKSVVGISRQVQRNEEGL 542
Query: 683 DVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDI 742
D + ++ D ++E A L+ ELK + TEL R+ +R +
Sbjct: 543 DGYKASMTCHLGD-----------FEEYARLRRELKDRE---TELARQGAAQRRAEAAVA 588
Query: 743 LKDFENG---HLP 752
L+ G H+P
Sbjct: 589 LEKLRPGDVIHVP 601
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 26/243 (10%)
Query: 916 HDAVENYKEQRTK------VARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 969
H +VE +++QR++ +ARL+ + R D ++ E + L+ S+ L
Sbjct: 689 HISVERHRKQRSQAADDREIARLRTAL-RAHPCHGCNDREDHARWAERYYRLLRDTSQ-L 746
Query: 970 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 1029
+RIE + + F RI ++ E L N + G A + GE +L + LR+
Sbjct: 747 ERRIEGRTNTIARTFDRIVALLTELDYLRGNE--VTEHGRRLARLYGELDLLASECLRDG 804
Query: 1030 ILLDLKPAQLAAVCASLVSE--------GIKVRLWKNNSSIYEPSTTVINVINVLDEHRS 1081
+ L PA+LAA ++LV E KV + +++ E ++ + LD
Sbjct: 805 VWEGLGPAELAACVSALVYESRSGDDAMAPKVPSGRAKAALGE----MVRIWGRLDALEE 860
Query: 1082 SF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 1140
F + E G P D F+ WASG E++ + + GD R ++ ID+L
Sbjct: 861 EFRISQTEGVGQREP---DLGFAWAAHMWASGKGLDEVLREVEMPAGDFVRWCKQVIDVL 917
Query: 1141 AQI 1143
QI
Sbjct: 918 GQI 920
>gi|15827694|ref|NP_301957.1| Ski2 subfamily helicase [Mycobacterium leprae TN]
gi|221230171|ref|YP_002503587.1| helicase, Ski2 subfamily [Mycobacterium leprae Br4923]
gi|18203674|sp|Q9ZBD8.1|HELY_MYCLE RecName: Full=Probable helicase HelY
gi|4200282|emb|CAA22943.1| putative helicase [Mycobacterium leprae]
gi|13093245|emb|CAC31714.1| probable helicase, Ski2 subfamily [Mycobacterium leprae]
gi|219933278|emb|CAR71428.1| probable helicase, Ski2 subfamily [Mycobacterium leprae Br4923]
Length = 920
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 219/623 (35%), Positives = 313/623 (50%), Gaps = 78/623 (12%)
Query: 146 MIDVDELASI---YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ 202
M D+ ELA F +D FQ+ + A RG V+V APT +GKT++ E A +A
Sbjct: 1 MTDLAELARFTAELPFSLDDFQQRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60
Query: 203 RRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSV 262
+ FYTTPLKALSNQK+ + +G N +GLLTGD ++N ++ +++MTTE+LRNMLY
Sbjct: 61 GKCFYTTPLKALSNQKYTDLTARYGRNRIGLLTGDQSVNGDSPVVVMTTEVLRNMLY--- 117
Query: 263 GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAG 322
+ L + +V+DEVH+++D RG VWEE+I++ P +V+++ LSATV+NA+E G
Sbjct: 118 ---ADSFALQGLSHVVMDEVHFIADRMRGPVWEEVILHLPDDVRMVSLSATVSNAEEFGG 174
Query: 323 WIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 382
W+ + G T ++ RPVPL + L L D ++ N L+ + +
Sbjct: 175 WVQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYDSNVDQSPVNPNLLR-HIAHCR- 232
Query: 383 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
D S RN R+ A S + ++ R +V ++D + +L
Sbjct: 233 EADRMSDWRNPRRRAGRGSG----------VRPRFYRSLARPEVIAILD------AEGLL 276
Query: 443 PAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEV---------ELALKRFRILYPDAVR 491
PAI F+F+R GCDAAVQ L E E +++ +LA +L R
Sbjct: 277 PAITFVFSRFGCDAAVQQCLRSPLRLTSEEERAQIAEVIDHRCGDLADADLAVLGYYEWR 336
Query: 492 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
E GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART VL L
Sbjct: 337 E----GLLRGLAAHHAGMLPAFRHAVEELFTAGLVKAVFATETLALGINMPARTVVLERL 392
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE---GAEECCKLLFAGVEP 608
K + LT E Q+ GRAGRRGID GH V++ P E G L A P
Sbjct: 393 VKFNGKQHVPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPSEDTSGPSAVAGLASARTFP 452
Query: 609 LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVM 668
L S F SY M +NL +H S E A L+EQSF Y +
Sbjct: 453 LRSSFVPSYNMTINL------VHWM-------------SPERAHALLEQSFAQYQADRSV 493
Query: 669 LAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELR 728
+ + + + ++SE+ +A E A L+ + +R ++ +
Sbjct: 494 VGLVRGIERCTQVLGDISSELGG-----------PDAPILEYARLRARIAEMERAQSFVF 542
Query: 729 RRMELKRFSALKDILKDFENGHL 751
R L+R A D+L G +
Sbjct: 543 R---LQRKQAANDVLAALRRGDI 562
>gi|295839814|ref|ZP_06826747.1| ATP-dependent RNA helicase [Streptomyces sp. SPB74]
gi|295827661|gb|EDY44690.2| ATP-dependent RNA helicase [Streptomyces sp. SPB74]
Length = 946
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 198/515 (38%), Positives = 274/515 (53%), Gaps = 51/515 (9%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+Y+F +D FQ S +A G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 42 MYEFGLDPFQIESCQALEAGKGVLVAAPTGSGKTIVGEFAVHLALREGKKCFYTTPIKAL 101
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQKF + + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 102 SNQKFGDLSKRYGADKVGLLTGDNSVNADAPVVVMTTEVLRNMLY------AGSPALTGL 155
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE++
Sbjct: 156 GYVVMDEVHYLSDRIRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVV 215
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
S RPVPL + + L +E G+ R ++ + L+++ E
Sbjct: 216 VSEHRPVPLFQHVLAGRRMYDLFEE-GRGRKRAVNPDLLRMARMEAG------------- 261
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
+ + P+VID L S +LPAI FIF+R C
Sbjct: 262 --RTGYGGRRRGREADRERERRQRARAWTPGRPEVID---RLDSEGLLPAITFIFSRAAC 316
Query: 455 DAAVQ--YLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPA----IKGLLKGVAAHHA 507
+AAVQ L DE E V EL +R + P+ + ++GL +G+AAHHA
Sbjct: 317 EAAVQQCLFAGLRLNDESERLAVRELVEERTASIPPEDLHVLGYFEFLEGLERGIAAHHA 376
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
G LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T E
Sbjct: 377 GMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITPGEY 436
Query: 568 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 627
Q+ GRAGRRGID GH V++ E L PL S F SY M +NL+
Sbjct: 437 TQLTGRAGRRGIDVEGHAVVLWQRAMSPEHLAGLAGTRTYPLRSSFRPSYNMAVNLVQ-- 494
Query: 628 KVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
Q GR +R+L+E SF +
Sbjct: 495 ---------------QFGR--HRSRELLETSFAQF 512
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 20/197 (10%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 1015
E+ RL +K+L +RIE + + F RI ++ E LD + + + G A +
Sbjct: 727 ERYHRLLRDTKQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGEQVTEHGRRLARLY 783
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSE--------GIKVRLWKNNSSIYEPST 1067
GE +L + LR + L PA+LAA ++LV E KV K S++ T
Sbjct: 784 GELDLLASECLRAGVWEGLGPAELAACASALVYESRSGDDAGAPKVPSGKVTSAL----T 839
Query: 1068 TVINVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD 1126
++ + LD F + E G P D F+ WASG E++ + +
Sbjct: 840 EMVRIWGRLDAVEEDFGISRTEGVGQREP---DLGFAWAAYEWASGKGLDEVLREAEMPA 896
Query: 1127 GDLARLLRRTIDLLAQI 1143
GD R ++ ID+L QI
Sbjct: 897 GDFVRWTKQIIDVLGQI 913
>gi|257056196|ref|YP_003134028.1| superfamily II RNA helicase [Saccharomonospora viridis DSM 43017]
gi|256586068|gb|ACU97201.1| superfamily II RNA helicase [Saccharomonospora viridis DSM 43017]
Length = 918
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 220/598 (36%), Positives = 301/598 (50%), Gaps = 63/598 (10%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F D FQ EA G V+V APT +GKT++ E A +A R+ FYTTP+
Sbjct: 29 FAAEVSFEFDDFQVRGCEALEDGHGVLVCAPTGAGKTIVGEFAVHLALAEGRKCFYTTPI 88
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + E +G + VGLLTGD++IN AQI++MTTE+LRNMLY + + L
Sbjct: 89 KALSNQKYGDLVERYGSDIVGLLTGDTSINGGAQIVVMTTEVLRNMLY------AESTTL 142
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
D+ +VLDEVHYL+D RG VWEE+I++ P V+++ LSATV+NA+E W+ ++ G T
Sbjct: 143 DDLGYVVLDEVHYLADRFRGAVWEEVILHLPDYVRVVGLSATVSNAEEFGEWLVEVRGDT 202
Query: 332 ELITSSRRPVPLTWYFSTKTALLPL-LDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
++ RPVPL + L L + E+ KL+ L+ + + G R
Sbjct: 203 TVVVDEHRPVPLWQHMLVGGRLYDLFVGERADTGEAKLNPRLLRAVEEAGRMHVPAGLRG 262
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
R+ R G Q R + P + + L +LPAI FIF+
Sbjct: 263 RSRR--------------GAPQRGP-------RYRPPSRTEIVDRLDRAGLLPAIVFIFS 301
Query: 451 RRGCDAAV-QYLED---CNLLDECEMSEVELALKRFRILYPDAVREPAI----KGLLKGV 502
R GCDAAV Q + N DE + + +R L P + +GL +G+
Sbjct: 302 RAGCDAAVTQCVRSGLRLNTPDEVQQVR-RIVDERTADLPPSDLEVLGYWEWREGLEQGI 360
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
AAHHAG LP +K +EELF RGLVKVVFATETLA GINMPART VL L K + L
Sbjct: 361 AAHHAGLLPAFKETVEELFVRGLVKVVFATETLALGINMPARTVVLERLVKYNGESHVDL 420
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
T E Q+ GRAGRRGID GH V+V P + L PL S F Y M +N
Sbjct: 421 TPGEYTQLTGRAGRRGIDVEGHAVVVWQPGVDPRQVAGLASTRTYPLRSSFRPGYNMAVN 480
Query: 623 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKET 682
L+ + +AR+L+EQSF + ++ +I++ T
Sbjct: 481 LVGRFGAV-------------------KARELLEQSFAQFQADRSVVGLSR---RIERNT 518
Query: 683 DVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALK 740
+ L DA+ +LS ++ + E KA R T RR K L+
Sbjct: 519 EALRGYA--DAVTGDFDEMLSYLTLRK--KISEREKALARQNTAARRAQTAKSLEKLR 572
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 9/215 (4%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ +RL ++RL +++ S + F RI ++ E L + + G+ A +
Sbjct: 700 ERYQRLAEDNQRLKRKVAATTHSLARAFDRIRRLLIERGYLGESGDDVTEHGQLLARLYS 759
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E++L A +R ++ L PA+LAAV ++LV E + + + P+ V
Sbjct: 760 ESDLLAAECIRQRVWHGLAPAELAAVVSTLVYEARR----DSTAEAKVPAGPVNKAWQET 815
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGDLAR 1131
S +E + +H ++ D+ F+ V WA G + +++ L GD R
Sbjct: 816 VRLWSDLVEDERRHRLDPTREPDAGFAWPVYRWARGESLEKVLTSAEVNGQELSAGDFVR 875
Query: 1132 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
R+ +DLL QI + + + A AS ++ R
Sbjct: 876 WSRQVVDLLEQIRDVLGKEHPVGGAAGKASRLLRR 910
>gi|418249757|ref|ZP_12876079.1| ATP-dependent DNA helicase HelY [Mycobacterium abscessus 47J26]
gi|420951751|ref|ZP_15414996.1| putative helicase helY [Mycobacterium massiliense 2B-0626]
gi|420955921|ref|ZP_15419159.1| putative helicase helY [Mycobacterium massiliense 2B-0107]
gi|420961566|ref|ZP_15424792.1| putative helicase helY [Mycobacterium massiliense 2B-1231]
gi|420991891|ref|ZP_15455040.1| putative helicase helY [Mycobacterium massiliense 2B-0307]
gi|420997730|ref|ZP_15460868.1| putative helicase helY [Mycobacterium massiliense 2B-0912-R]
gi|421002168|ref|ZP_15465294.1| putative helicase helY [Mycobacterium massiliense 2B-0912-S]
gi|353451412|gb|EHB99806.1| ATP-dependent DNA helicase HelY [Mycobacterium abscessus 47J26]
gi|392159833|gb|EIU85527.1| putative helicase helY [Mycobacterium massiliense 2B-0626]
gi|392187191|gb|EIV12833.1| putative helicase helY [Mycobacterium massiliense 2B-0307]
gi|392187442|gb|EIV13083.1| putative helicase helY [Mycobacterium massiliense 2B-0912-R]
gi|392197381|gb|EIV22996.1| putative helicase helY [Mycobacterium massiliense 2B-0912-S]
gi|392251600|gb|EIV77072.1| putative helicase helY [Mycobacterium massiliense 2B-1231]
gi|392254633|gb|EIV80098.1| putative helicase helY [Mycobacterium massiliense 2B-0107]
Length = 922
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 209/544 (38%), Positives = 284/544 (52%), Gaps = 50/544 (9%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + A G V+V APT +GKT++ E A +A R+ FYTTP+KALSNQ
Sbjct: 18 FALDPFQVRACTALENGHGVLVCAPTGAGKTIVGEFAVHLALAAGRKCFYTTPIKALSNQ 77
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K + +G VGLLTGDS+IN +A +++MTTE+LRNMLY + L + +
Sbjct: 78 KHNDLVSVYGPEKVGLLTGDSSINSDAPVVVMTTEVLRNMLY------ADSPALHGLSYV 131
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVH+L+D RG VWEE+I++ P++V + LSATV+NA+E GWI + G T ++
Sbjct: 132 VMDEVHFLADRFRGAVWEEVILHLPEDVALASLSATVSNAEEFGGWIKTVRGDTTVVVDE 191
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP-YKDGGSRRRNSRKH 396
RPVPL + L L D + + R+ S + S+V P ++RR + +
Sbjct: 192 TRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG--TGNPSQVDPDLTRYIAQRRQADRF 248
Query: 397 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
AD + Q + R P+VI L +LPAI FIF+R GCD
Sbjct: 249 ADFDRPRRRGPQ---QRTSRPPTLYRPPSRPEVIT---RLDEDGLLPAITFIFSRAGCDG 302
Query: 457 AV-QYLED-CNLLDECEMSEVELALKRFRILYPDAV---------REPAIKGLLKGVAAH 505
AV Q L L E E E+ + R P+A RE GLL+G+AAH
Sbjct: 303 AVAQCLRSRLRLTTEEERREIVAIIDRRTEGLPEADLDVLGYWQWRE----GLLRGIAAH 358
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP+++ +EELF +GLVK VFATETLA GINMPART VL L K LT
Sbjct: 359 HAGMLPVFRHTVEELFTKGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHAALTPG 418
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E Q+ GRAGRRGID GH V++ TP E L PL S F SY M +NL
Sbjct: 419 EYTQLTGRAGRRGIDVEGHAVVLWTPEVEPTEIAGLASTRTFPLRSSFAPSYNMTINL-- 476
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 685
+H + AR+L+E+SF Y ++ + + +K D +
Sbjct: 477 ----VHRMGPA-------------PARELLERSFAQYQADRSVVGLVRGIERGRKMLDEI 519
Query: 686 TSEI 689
E+
Sbjct: 520 AGEL 523
Score = 41.6 bits (96), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 18/208 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETAAA 1013
E+ R++ + +L +++ S + F RI ++ E ++ + ++ + G A
Sbjct: 701 ERYLRIERDNAQLQRKVAAATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLLAR 760
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
I E++L +A LR + LKPA+LAAV ++++ E S+ E T +
Sbjct: 761 IYSESDLLVAECLRRGLWAGLKPAELAAVASAVLYES----RGDTVSATGEAPTAALR-- 814
Query: 1074 NVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCALD 1125
L E + L +++H + +D F V WA+ + AL
Sbjct: 815 GALAETHRALARLRRDEQQHHLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTALP 874
Query: 1126 DGDLARLLRRTIDLLAQIPK-LPDVDQR 1152
GD R R+ +DLL QI K PD + R
Sbjct: 875 AGDFVRWCRQVVDLLDQIHKAAPDAEVR 902
>gi|384566291|ref|ZP_10013395.1| superfamily II RNA helicase [Saccharomonospora glauca K62]
gi|384522145|gb|EIE99340.1| superfamily II RNA helicase [Saccharomonospora glauca K62]
Length = 929
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 204/540 (37%), Positives = 284/540 (52%), Gaps = 65/540 (12%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F D FQ EA G V+V APT +GKT++ E A +A R+ FYTTP+KALSNQ
Sbjct: 46 FDFDDFQIRGCEALEDGHGVLVCAPTGAGKTVVGEFAVHLALAEGRKCFYTTPIKALSNQ 105
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + E +G + VGLLTGD+++N AQI++MTTE+LRNMLY + + L D+ +
Sbjct: 106 KYGDLVERYGSDAVGLLTGDTSVNGGAQIVVMTTEVLRNMLY------AGSTALDDLGYV 159
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVHYL+D RG VWEE+I++ P V+++ LSATV+NA+E W+ ++ G T ++
Sbjct: 160 VMDEVHYLADRFRGAVWEEVILHLPSYVRVVGLSATVSNAEEFGEWLMEVRGDTSVVVDE 219
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RPVPL + +L L G+H + +L+ ++ +D +R HA
Sbjct: 220 HRPVPLWQHMLVGGRMLDLF--AGRHAD----TGEARLNPQLLRRVED------TARMHA 267
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAA 457
+ + + R + P ++ + L S +LPAI FIF+R GCDAA
Sbjct: 268 PAGLRG--------RGRRGAPYRGPRYRPPSRVEIVDRLDSAGLLPAIVFIFSRAGCDAA 319
Query: 458 VQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP----AIKG-------LLKGVAAHH 506
V L ++ E A + RI+ P A+ G L +G+AAHH
Sbjct: 320 VTQCVRSGL----RLNTPEEAEEVRRIVDERTADLPQNDLAVLGYWEWREALEQGIAAHH 375
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
AG LP +K +EELF RGLVKVVFATETLA GINMPART VL L K + LT E
Sbjct: 376 AGLLPAFKETVEELFVRGLVKVVFATETLALGINMPARTVVLERLVKYNGEAHVDLTPGE 435
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
Q+ GRAGRRGID GH V+V P + L PL S F Y M +NL+
Sbjct: 436 YTQLTGRAGRRGIDVEGHAVVVWQPGVDPRQVAGLASTRTYPLRSSFRPGYNMAVNLV-- 493
Query: 627 AKVMHLSNESDDMKALQAGR-SLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 685
GR +AR+L+EQSF + ++ +I++ T+ L
Sbjct: 494 ------------------GRFGAAKARELLEQSFAQFQADRSVVGLSR---RIERNTEAL 532
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 99/215 (46%), Gaps = 9/215 (4%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL+A +++L +++ S + F RI ++ E LD + + G + +
Sbjct: 711 ERYLRLEAETEQLKRKVAATTHSLARAFDRIRRLLSERGYLDADGDTVTEHGRLLSRLYS 770
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E++L A +R ++ L PA+LAAV ++LV E + ++ ST + V
Sbjct: 771 ESDLLAAECIRQRLWHGLAPAELAAVVSTLVYEARRDSPAESKLPSGPVSTAWQETVRVW 830
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD-----GDLAR 1131
+ +E + +H ++ D+ F+ V WA G + +++ ++ GD R
Sbjct: 831 ----TDLVEDERRHRLDRTREPDAGFAWPVYRWARGESLEKVLTTAEMNGQELSAGDFVR 886
Query: 1132 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
R+ +DLL QI + + + A AS ++ R
Sbjct: 887 WSRQVVDLLDQIKDVLGKEHPVGGAAGKASRLLRR 921
>gi|409392272|ref|ZP_11243853.1| putative helicase [Gordonia rubripertincta NBRC 101908]
gi|403197872|dbj|GAB87087.1| putative helicase [Gordonia rubripertincta NBRC 101908]
Length = 942
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 209/554 (37%), Positives = 290/554 (52%), Gaps = 47/554 (8%)
Query: 146 MIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205
M +D S DF +D FQR + EA G V+V APT +GKT++ E A +A +
Sbjct: 1 MSQLDAFTSRLDFGLDPFQRRACEALEAGHGVLVCAPTGAGKTIVGEFAVHLALAGGTKC 60
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
FYTTP+KALSNQK+ + G +VGLLTGDS+IN +A I++MTTE++RNM+Y
Sbjct: 61 FYTTPIKALSNQKYADLAAVHGHESVGLLTGDSSINPDAPIVVMTTEVVRNMIY------ 114
Query: 266 SSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
+ES D + +V+DEVH+L+D RG VWEE+I++ V+++ LSATV+NA+E WI
Sbjct: 115 -AESRALDGLSHVVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLSATVSNAEEFGDWI 173
Query: 325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKH-MNRKLSLNYLQLSTSEVKPY 383
+ G T +I RPVPL+ + + L D + +RK S V P
Sbjct: 174 QTVRGDTSVIVDEHRPVPLSQHMLVGQRMFDLFDPADRDPADRK-------GSRPRVNPE 226
Query: 384 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 443
R R + +S+ G + P ++ L +LP
Sbjct: 227 LKRHIRHRILLAEDERDSSRGRGRRGGGGQPRRRDGRGPLLSRPNLVG---RLDREGLLP 283
Query: 444 AIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELAL-KRFRILYPDAVREPAIK---- 496
AI FIF+R GCDAA+ Q L LL E +EV+ + +R L P ++
Sbjct: 284 AIGFIFSRAGCDAALAQCLRSGIALLTPEEAAEVDAVVDRRLTELSPTDADVLGVQEWRE 343
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
GL +G+A+HHAG LP ++ +EELF RGLV++VFATETLA GINMPAR+ VL L K
Sbjct: 344 GLRRGLASHHAGMLPTFRHAVEELFVRGLVRMVFATETLALGINMPARSVVLERLVKYNG 403
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
+ LT E Q+ GRAGRRGID GH V+V TP EE L A PL S F+
Sbjct: 404 ESHVDLTPGEFTQLTGRAGRRGIDVEGHAVVVWTPEVVPEEVAGLAGARTFPLRSSFSPE 463
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGR-SLEEARKLVEQSFGNYVGSNVMLAAKDEL 675
Y M +NLL GR L+ AR+L+ +SF + ++ +L
Sbjct: 464 YNMAVNLL--------------------GRLGLDGARELLHRSFAQFQADRSVVGLARKL 503
Query: 676 CKIQKETDVLTSEI 689
+ Q+ L E+
Sbjct: 504 HESQRALRKLDGEL 517
>gi|404419067|ref|ZP_11000829.1| DEAD/DEAH box helicase [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
gi|403661398|gb|EJZ15911.1| DEAD/DEAH box helicase [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
Length = 919
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 217/602 (36%), Positives = 303/602 (50%), Gaps = 77/602 (12%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
Y F +D FQ + A G V+V APT +GKT++ E A +A + FYTTP+KALS
Sbjct: 20 YPFALDDFQLRACRALESGHGVLVCAPTGAGKTVVGEFAVHLALAAGGKCFYTTPIKALS 79
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK + +G + +GLLTGD +IN +A I++MTTE+LRNMLY ++ S L +
Sbjct: 80 NQKHNDLVARYGPDKIGLLTGDQSINGDADIVVMTTEVLRNMLY------ANSSALHGLS 133
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELIT 335
+V+DEVH+L+D RG VWEE+I++ P+EV ++ LSATV+NA+E GWI + G T ++
Sbjct: 134 YVVMDEVHFLADRMRGAVWEEVILHLPEEVLLVSLSATVSNAEEFGGWIQTVRGDTTVVV 193
Query: 336 SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 395
RPVPL+ + L L + + L ++ S RR + +
Sbjct: 194 DEHRPVPLSQHMLVGRRLFDLFEGTDSALVDPELLRHI--------------SHRREADR 239
Query: 396 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCD 455
AD + R P VI TL S +LPAI F+F+R GCD
Sbjct: 240 LADWQPRGRGRG----RSGGGRPQLYRPPSRPDVIATL---DSAGLLPAITFVFSRAGCD 292
Query: 456 AAVQYL-----------EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 504
AAVQ E + D + +LA +L RE GLL+G+AA
Sbjct: 293 AAVQQCLRAPLRLTTDEERARIADIVDRRCADLAESDLIVLDYHQWRE----GLLRGLAA 348
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HHAG LP+++ +EELF GLVK VFATETLA GINMPART VL L K + LT
Sbjct: 349 HHAGMLPVFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHVPLTP 408
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE-----PLVSQFTASYGM 619
E Q+ GRAGRRGID GH V++ P + E ++ AG+ PL S F+ SY M
Sbjct: 409 GEYTQLTGRAGRRGIDVEGHAVVLWRPDDSNAEPAEV--AGLASTRTFPLRSSFSPSYNM 466
Query: 620 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 679
+NL+ Q G E+A +L+E+SF Y ++ + + +
Sbjct: 467 TINLVQ-----------------QMG--PEQAHRLLERSFAQYQADRSVVGLVRGIARGE 507
Query: 680 KETDVLTSEISD-DAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSA 738
+ L +E+ DA RL A + E +A+ R RRR +A
Sbjct: 508 RMMGELAAELGGADAPILDYVRL--------RAKIGERERAQSRASRLQRRRAATDALAA 559
Query: 739 LK 740
L+
Sbjct: 560 LR 561
>gi|386850164|ref|YP_006268177.1| ATP-dependent RNA helicase HelY [Actinoplanes sp. SE50/110]
gi|359837668|gb|AEV86109.1| ATP-dependent RNA helicase HelY [Actinoplanes sp. SE50/110]
Length = 918
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 207/553 (37%), Positives = 281/553 (50%), Gaps = 76/553 (13%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAE-AAAVATVANQRRIFYTTPLKALSN 216
F +D FQR S EA RG+ V+V APT +GKT++ E A +A A +R+ FYTTP+KALSN
Sbjct: 33 FDLDDFQRESCEALERGNGVLVCAPTGAGKTVVGEFAVHLALRAGERKCFYTTPIKALSN 92
Query: 217 QKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276
QKF + E +G + VGLLTGD+ IN +A +++MTTE+LRNMLY S S L ++
Sbjct: 93 QKFHDLVERYGPDKVGLLTGDNVINADAPVVVMTTEVLRNMLY------SGSSQLKNLAY 146
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
+V+DEVHYL+D RG VWEE+II+ P V ++ LSATV+N +E A W+ + G+T ++ S
Sbjct: 147 VVMDEVHYLADRFRGAVWEEVIIHLPASVTLVSLSATVSNYEEFADWLVTVRGETSVVVS 206
Query: 337 SRRPVPLTWYFSTKTALLPLL---DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 393
RPVPL + + L D KH L Y T E++ + G R
Sbjct: 207 EHRPVPLWQHMLVGRRMFDLFHDADAARKHDVHPELLRY----TREMERRLELGER---- 258
Query: 394 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453
+ N Q ++ + R+ +LPAI FIF+R G
Sbjct: 259 --ASGWNGRGGRGRRWQPPPRAEVVDRLERA---------------GLLPAILFIFSRAG 301
Query: 454 CDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPA-----------IKGLLK 500
CDAAVQ L D E +E+ RI PA + GL +
Sbjct: 302 CDAAVQQCLGAGLRLTDPDERAEIR------RIAQAKVASIPAEDLSVLGYWEWLDGLER 355
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
GVAAHHAG LP +K +EE F GLVK VFATETLA GINMPAR VL L K +
Sbjct: 356 GVAAHHAGMLPAFKEAVEECFVNGLVKAVFATETLALGINMPARCVVLERLVKFNGEAHV 415
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
LT E Q+ GRAGRRGID GH V++ +P L PL S F SY M
Sbjct: 416 DLTPGEYTQLTGRAGRRGIDVEGHAVVLWSPEVDPRHVAGLASTRTYPLRSSFRPSYNMA 475
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
+NL+ +++R+L+E SF + ++ + +Q+
Sbjct: 476 VNLVGTV-------------------GADKSRELLESSFAQFQADRSVVGLARQ---VQR 513
Query: 681 ETDVLTSEISDDA 693
D + + +D A
Sbjct: 514 NVDTMQTYGADAA 526
>gi|354616745|ref|ZP_09034319.1| DEAD/DEAH box helicase domain protein [Saccharomonospora
paurometabolica YIM 90007]
gi|353218902|gb|EHB83567.1| DEAD/DEAH box helicase domain protein [Saccharomonospora
paurometabolica YIM 90007]
Length = 923
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 210/556 (37%), Positives = 284/556 (51%), Gaps = 61/556 (10%)
Query: 114 SSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLR 173
S+D SP+ S E + R E+ F E+ F D FQ EA
Sbjct: 4 STDPSPSTSPAEAYAAARRRGRYPELARFTGELA----------FTFDDFQVRGCEALED 53
Query: 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGL 233
G V+V APT +GKT++ E A +A R+ FYTTP+KALSNQKF + E +G VGL
Sbjct: 54 GHGVLVCAPTGAGKTVVGEFAVHLALAEGRKCFYTTPIKALSNQKFADLTERYGTGTVGL 113
Query: 234 LTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTV 293
LTGD++IN +AQI++MTTE+LRNMLY + + L ++ +V+DE+HYL+D RG V
Sbjct: 114 LTGDTSINGDAQIVVMTTEVLRNMLY------AGSAALDNLGYVVMDEIHYLADRFRGAV 167
Query: 294 WEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTAL 353
WEE+I++ P V+++ LSATV+NA+E W+ + G T ++ RPVPL + L
Sbjct: 168 WEEVILHLPAYVRVVGLSATVSNAEEFGEWLVAVRGDTTVVVDEHRPVPLWQHMLVGGRL 227
Query: 354 LPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQL 413
+ L G+ + +N L E +R HA + +
Sbjct: 228 MDLF--AGESDTGEAKINPRLLRRVE-----------ETARMHAPAGAGKGGRNRRGGPP 274
Query: 414 SKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDEC--E 471
R++V +D +LPAI FIF+R GCDAAV L E
Sbjct: 275 RMPRYRPPSRTEVIDRLDRA------GLLPAIVFIFSRAGCDAAVTQCRHSRLRLNTPDE 328
Query: 472 MSEVELAL-KRFRILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLV 526
++EV + +R L PD + GL +GVAAHHAG LP +K +EELF RGLV
Sbjct: 329 VAEVRRVVDERTADLPPDDLAVLGYWEWRDGLEQGVAAHHAGLLPAFKETVEELFVRGLV 388
Query: 527 KVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVV 586
KVVFATETLA GINMPART VL L K + LT+ E Q+ GRAGRRGID GH V
Sbjct: 389 KVVFATETLALGINMPARTVVLERLVKYNGEAHVDLTAGEYTQLTGRAGRRGIDVEGHAV 448
Query: 587 LVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGR 646
++ P + L PL S F Y M +NL+ Q G
Sbjct: 449 VLWQPGMDPRQVGGLASTRTYPLKSSFRPGYNMAVNLVG-----------------QLGA 491
Query: 647 SLEEARKLVEQSFGNY 662
+ EAR ++E+SF +
Sbjct: 492 A--EARGMLERSFAQF 505
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 9/192 (4%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ +RL A + +L +++ S + F RI ++ E L + + G T + +
Sbjct: 705 ERHERLAAENDKLERKVAATTHSLARSFDRIRGLLAERGYLGDDGDEVTGHGWTLSRLYS 764
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E++L A +R+++ L PA+LAAV ++LV E + + PS V +
Sbjct: 765 ESDLLAAECVRHRVWHGLGPAELAAVVSTLVYEARR----DATAEAKVPSGPVSDAWRET 820
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGDLAR 1131
+ ++ + +H ++ D+ F+ V WA G + +++ L GD R
Sbjct: 821 VRVWTDLVDDERRHRLDRTREPDAGFAWPVYRWARGESLEKVLTTAETNGQELSAGDFVR 880
Query: 1132 LLRRTIDLLAQI 1143
R+ IDLL Q+
Sbjct: 881 WARQVIDLLDQL 892
>gi|300786755|ref|YP_003767046.1| ATP-dependent RNA helicase HelY [Amycolatopsis mediterranei U32]
gi|384150085|ref|YP_005532901.1| ATP-dependent RNA helicase HelY [Amycolatopsis mediterranei S699]
gi|399538638|ref|YP_006551300.1| ATP-dependent RNA helicase HelY [Amycolatopsis mediterranei S699]
gi|299796269|gb|ADJ46644.1| ATP-dependent RNA helicase HelY [Amycolatopsis mediterranei U32]
gi|340528239|gb|AEK43444.1| ATP-dependent RNA helicase HelY [Amycolatopsis mediterranei S699]
gi|398319408|gb|AFO78355.1| ATP-dependent RNA helicase HelY [Amycolatopsis mediterranei S699]
Length = 943
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 200/551 (36%), Positives = 283/551 (51%), Gaps = 55/551 (9%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F D FQ EA G V+V APT +GKT++ E A +A R+ FYTTP+
Sbjct: 28 FAAEASFEFDPFQIRGCEALEDGHGVLVCAPTGAGKTVVGEFAVHLALAEGRKCFYTTPI 87
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + G + VGLLTGD++IN AQ+++MTTE+LRNMLY + S +
Sbjct: 88 KALSNQKYADLVARHGADAVGLLTGDTSINGNAQVVVMTTEVLRNMLY------AGSSTI 141
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
D+ +V+DEVHYL+D RG VWEE+I++ P+ V+++ LSATV+NA+E W+ ++ G T
Sbjct: 142 IDLGYVVMDEVHYLADRFRGAVWEEVILHLPEHVRVVGLSATVSNAEEFGEWLVEVRGDT 201
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-NRKLSLNYLQLSTSEVKPYKDGGSRR 390
++ RPVPL + LL L H +L +N L +E
Sbjct: 202 TVVVDEHRPVPLWQHMLVGNRLLDLFAGDDVHAPGAELRINPTLLRRTE----------- 250
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
++ F + + + + R + P +D + L +LPAI FIF+
Sbjct: 251 -------EIGRQYAPAGFRGPRGRRGAPPRMPRFRPPSRVDVVEQLDRAGLLPAIVFIFS 303
Query: 451 RRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG-------LLKG 501
R GCDAAV L E+ E+ ++ P+ + + G L +G
Sbjct: 304 RAGCDAAVAQCVRSGLRLNGPGEVEEIRRVIEERTADLPEG--DLGVLGYWEWREALERG 361
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+A HHAG LP +K +EELF RGLVKVVFATETLA GINMPART VL L K +
Sbjct: 362 IAGHHAGLLPAFKETVEELFVRGLVKVVFATETLALGINMPARTVVLERLVKYNGEAHVD 421
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
LT E Q+ GRAGRRGID GH V+ P ++ L PL S F Y M +
Sbjct: 422 LTPGEYTQLTGRAGRRGIDVEGHAVVAWQPGVDPKQVAGLASTRTYPLRSSFRPGYNMAV 481
Query: 622 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKE 681
NL+A Q G + EAR+L+EQSF + ++ + + ++
Sbjct: 482 NLVA-----------------QVGAA--EARELLEQSFAQFQADRSVVGTARRIERNKEA 522
Query: 682 TDVLTSEISDD 692
T+ ++ D
Sbjct: 523 LKGYTAAVTGD 533
Score = 40.4 bits (93), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 15/135 (11%)
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E++L A +R+ + L PA+LAAV ++LV E + EP V
Sbjct: 785 ESDLLAAECIRHGVWRKLNPAELAAVVSTLVFEA-------RRDTAGEPRLPGGAVPEAW 837
Query: 1077 DEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGD 1128
E ++EL E +H ++ D+ F+ V WA G + +++ L GD
Sbjct: 838 QETARLWVELTEDERRHRLDRTREPDAGFAWPVYRWARGESLEKVLTAAEANGQELSAGD 897
Query: 1129 LARLLRRTIDLLAQI 1143
R R+ IDLL QI
Sbjct: 898 FVRWSRQVIDLLDQI 912
>gi|311113613|ref|YP_003984835.1| helicase [Rothia dentocariosa ATCC 17931]
gi|310945107|gb|ADP41401.1| helicase [Rothia dentocariosa ATCC 17931]
Length = 973
Score = 321 bits (823), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 195/543 (35%), Positives = 281/543 (51%), Gaps = 72/543 (13%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQR + ++ G SV+V+APT SGKT++ E + + FYTTP+KALSNQ
Sbjct: 45 FPLDSFQRQACQSVETGHSVLVAAPTGSGKTVVGEFGIYLALQTGTKAFYTTPIKALSNQ 104
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ +F +G+ NVGLLTGD++IN EA I++MTTE+LRNMLY + + L + +
Sbjct: 105 KYHDFVREYGEENVGLLTGDTSINTEAPIVVMTTEVLRNMLY------AESTTLIGLGYV 158
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
++DEVHYL+D RG VWEE II+ P+ V +I LSATV+N +E W+ + G T++I S
Sbjct: 159 IMDEVHYLADRFRGAVWEEAIIHLPEHVTVISLSATVSNVEEFGAWLDTVRGDTDVIVSE 218
Query: 338 RRPVPLTWYFSTKTALLPLL-------DEKGKHMNRKLSLNYLQLSTS---------EVK 381
RPVPL + ++ L E RK LQ + + +++
Sbjct: 219 HRPVPLWQHLMVGNRIIDLFVPDETSQQEASPTKRRKNHTKSLQNAPTGLRINPLLKQLR 278
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKN------------SINAIRRSQVPQV 429
P + R N+ K H L ++ S + I R ++ ++
Sbjct: 279 PGFRRHTPRHNAPKRERFRRGRNRHDKHTHALERSRHKTFTQDANVLSPHRIPRPEMARI 338
Query: 430 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF------- 482
+D + +LPAI FIF+R CD AV + N++ E E + ++ +
Sbjct: 339 LD------KQGLLPAICFIFSRAACDDAVTQCVNANIVLTTE--EQQQTIRAYIAETTAH 390
Query: 483 ---RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 539
R L+ E GL++GVAAHHAG LP++K +E LF +GL+K+VFATETLA GI
Sbjct: 391 LDNRDLHALGYYE-WRDGLIRGVAAHHAGLLPLFKEVVETLFAQGLIKLVFATETLALGI 449
Query: 540 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 599
NMPART +L L+K + +T E Q+ GRAGRRGID GH V++ P E+
Sbjct: 450 NMPARTVMLEKLTKFNGETHVDITPGEYTQLTGRAGRRGIDLEGHAVVLWRPGLVPEQVA 509
Query: 600 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 659
L PL S F +Y M NL+A E RK++E SF
Sbjct: 510 TLASTRTYPLNSSFRPTYNMAANLIAAYGA-------------------ERTRKILESSF 550
Query: 660 GNY 662
+
Sbjct: 551 AQF 553
Score = 48.1 bits (113), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 100/218 (45%), Gaps = 16/218 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIR- 1015
E+ ++L A ++ L ++I + + + F RI+ ++ E + ++ L A+R
Sbjct: 757 ERWRKLNAETEGLRRQITRRTNTIAQVFNRIAKLLTEYGYVTADSHNGLKLTTKGEALRK 816
Query: 1016 --GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG----IKVRLWKNNSSIYEPSTTV 1069
GE +L ++ L L DL PA +AA A+L +G I++ + S+ T+
Sbjct: 817 LYGEKDLLTSICLEKGFLTDLDPAAIAATIAALTYQGKKETIEILPRYPHPSLQVSIATI 876
Query: 1070 INVINVLDEHRSSFLELQEKHGV-EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 1128
++ L+ H +E+H + + P C D + WA G+ + + D L GD
Sbjct: 877 NRELDHLNVH-------EERHELDQTPPC-DLGLVTPIYRWARGMHLAKALEDTGLAAGD 928
Query: 1129 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
R ++ ID L QI +P + L+ + A ++ R
Sbjct: 929 FVRWAKQVIDALDQIAHIPTISPNLRASCEKAIALIRR 966
>gi|302546693|ref|ZP_07299035.1| putative ATP-dependent RNA helicase [Streptomyces hygroscopicus
ATCC 53653]
gi|302464311|gb|EFL27404.1| putative ATP-dependent RNA helicase [Streptomyces himastatinicus
ATCC 53653]
Length = 949
Score = 321 bits (822), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 206/576 (35%), Positives = 301/576 (52%), Gaps = 61/576 (10%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+Y F +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 39 MYAFALDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALTQGRKCFYTTPIKAL 98
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + + +G + VGLLTGD+++N EA +++MTTE+LRNMLY + L +
Sbjct: 99 SNQKYADLVKRYGADKVGLLTGDNSVNSEAPVVVMTTEVLRNMLY------AGSQSLLGL 152
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 153 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 212
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKG-----KHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
S RPVPL + + L +EK + R+++ + ++L+ E G +
Sbjct: 213 VSEHRPVPLWQHVLAGRRMYDLFEEKSGRDGDQSGRREVNPDLVRLARMENSRPAFGRDK 272
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
RR NN+ + + + + I +VID L + +LPAI FIF
Sbjct: 273 RR--------GRNNMREA--DRERERRQRSRIWTPGRAEVID---RLDAEGLLPAITFIF 319
Query: 450 NRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGV 502
+R GC++AVQ L D+ ++V ++ PD ++GL +G+
Sbjct: 320 SRAGCESAVQQCLYAGLRLNDDAARAQVRAIVEERTAGIPDEDLHVLGYFEWLEGLERGI 379
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +
Sbjct: 380 AAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADI 439
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
T E Q+ GRAGRRGID GH V++ L PL S F SY M +N
Sbjct: 440 TPGEYTQLTGRAGRRGIDVEGHAVVLWQRAMDPAALAGLAGTRTYPLRSSFKPSYNMAVN 499
Query: 623 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKET 682
L++ Q GR +R+L+E SF + ++ ++ + Q+
Sbjct: 500 LVS-----------------QFGR--HRSRELLETSFAQFQADKAVVGISRQVQRNQEGL 540
Query: 683 DVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELK 718
+ + ++ D + E A L+ ELK
Sbjct: 541 EGYRASMTCHLGD-----------FDEYARLRRELK 565
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 114/274 (41%), Gaps = 51/274 (18%)
Query: 915 YHDAVENYKEQR-----TKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 969
+HD + KE+ T++ARL+ I R D ++ E + RL +++L
Sbjct: 687 HHDVRRHRKERSRAADDTEIARLRAAI-RAHPCHGCSDREDHARWGE-RYHRLLRDTRQL 744
Query: 970 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 1029
+RIE + + F RI ++ E L + + +G+ A + GE +L + LR+
Sbjct: 745 ERRIEGRTNTIARTFDRICALLSELEYLRGDE--VTDVGKRLARLYGELDLLASECLRDG 802
Query: 1030 ILLDLKPAQLAAVCASLVSE---------------------GIKVRLWKNNSSIYEPSTT 1068
+ LKPA+LAA ++LV E G VR+W ++ E
Sbjct: 803 VWEGLKPAELAACASALVYESRSADDALPPKLPTGAAKAALGEMVRIWGRLDALEE---- 858
Query: 1069 VINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 1128
EH+ + E G P D F+ WASG E++ + + GD
Sbjct: 859 ---------EHK---INQAEGVGQREP---DLGFAWAAYRWASGHGLDEVLREVDMPAGD 903
Query: 1129 LARLLRRTIDLLAQI-PKLPDVD-QRLQKNAVDA 1160
R ++ ID+L QI PD R + AVD
Sbjct: 904 FVRWCKQLIDVLGQIAAAAPDGSVARNARKAVDG 937
>gi|443628832|ref|ZP_21113172.1| putative Helicase [Streptomyces viridochromogenes Tue57]
gi|443337703|gb|ELS52005.1| putative Helicase [Streptomyces viridochromogenes Tue57]
Length = 950
Score = 321 bits (822), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 223/619 (36%), Positives = 317/619 (51%), Gaps = 87/619 (14%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 46 MYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALMQGRKCFYTTPIKAL 105
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +GD VGLLTGD++IN +A +++MTTE+LRNMLY + L +
Sbjct: 106 SNQKYADLCRRYGDGMVGLLTGDNSINPDAAVVVMTTEVLRNMLY------AGSQTLLGL 159
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 160 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 219
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE-VKP-YKDGGSRRRN 392
S RPVPL + + L +E G+ + ++ + +L+ E +P Y+D RR
Sbjct: 220 VSEHRPVPLFQHVLAGRRMYDLFEE-GEGHKKAVNPDLTRLARMEATRPSYQD----RRR 274
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R + + + + + P+VI+ L + +LPAI FIF+R
Sbjct: 275 GRAMREADRER----------ERRQRSRVWTPGRPEVIE---RLDAEGLLPAITFIFSRA 321
Query: 453 GCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA--------IKGLLKGV 502
C+AAVQ L DE +V ++ P RE ++GL +G+
Sbjct: 322 ACEAAVQQCLYAGLRLNDEEARDKVRALVEERTASIP---REDLHVLGYYEWLEGLERGI 378
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +
Sbjct: 379 AAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADI 438
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
T E Q+ GRAGRRGID GH V++ E L PL S F SY M +N
Sbjct: 439 TPGEYTQLTGRAGRRGIDVEGHAVVLWQRGMSPEHLAGLAGTRTYPLRSSFKPSYNMAVN 498
Query: 623 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY------VGSNVMLAAKDELC 676
L+ Q GR +R+L+E SF + VG + + +E
Sbjct: 499 LVE-----------------QFGR--HRSRELLETSFAQFQADKSVVGISRQVQRNEEGL 539
Query: 677 KIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRF 736
KE+ +T + D ++E A L+ ELK + EL R+ +R
Sbjct: 540 AGYKES--MTCHLGD---------------FEEYARLRRELKDRE---NELARQGAAQRR 579
Query: 737 SALKDILKDFENG---HLP 752
+ L+ + G H+P
Sbjct: 580 AEAAVALEKLKPGDVIHVP 598
Score = 47.8 bits (112), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 22/217 (10%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 1015
E+ RL + +L +RIE + + F RI ++ E LD + + G+ A +
Sbjct: 731 ERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEHGKRLARLY 787
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT------- 1068
GE +L + LR ++ L PA+LAA ++LV E R+ + + PS
Sbjct: 788 GELDLLASECLRERVWEGLGPAELAACVSALVYE---ARVGDDAMAPKLPSGKAKAALGE 844
Query: 1069 VINVINVLDEHRSSFLELQ-EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 1127
++ + LD F Q E G P D F+ WASG E++ + + G
Sbjct: 845 MVRIWGRLDALEEDFRITQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAG 901
Query: 1128 DLARLLRRTIDLLAQIPKLPDVD----QRLQKNAVDA 1160
D R ++ ID+L QI V+ + + AVDA
Sbjct: 902 DFVRWCKQVIDVLGQISAASPVEGSTVAKSARKAVDA 938
>gi|183601660|ref|ZP_02963030.1| probable helicase [Bifidobacterium animalis subsp. lactis HN019]
gi|241190841|ref|YP_002968235.1| helicase [Bifidobacterium animalis subsp. lactis Bl-04]
gi|241196247|ref|YP_002969802.1| helicase [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|384195399|ref|YP_005581144.1| helicase [Bifidobacterium animalis subsp. lactis V9]
gi|387820708|ref|YP_006300751.1| helicase [Bifidobacterium animalis subsp. lactis B420]
gi|387822382|ref|YP_006302331.1| helicase [Bifidobacterium animalis subsp. lactis Bi-07]
gi|423679368|ref|ZP_17654244.1| helicase [Bifidobacterium animalis subsp. lactis BS 01]
gi|183219266|gb|EDT89907.1| probable helicase [Bifidobacterium animalis subsp. lactis HN019]
gi|240249233|gb|ACS46173.1| helicase [Bifidobacterium animalis subsp. lactis Bl-04]
gi|240250801|gb|ACS47740.1| helicase [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|295793830|gb|ADG33365.1| helicase [Bifidobacterium animalis subsp. lactis V9]
gi|366041479|gb|EHN17974.1| helicase [Bifidobacterium animalis subsp. lactis BS 01]
gi|386653409|gb|AFJ16539.1| putative helicase [Bifidobacterium animalis subsp. lactis B420]
gi|386654990|gb|AFJ18119.1| putative helicase [Bifidobacterium animalis subsp. lactis Bi-07]
Length = 829
Score = 321 bits (822), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 221/622 (35%), Positives = 323/622 (51%), Gaps = 80/622 (12%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI--FYTTPLKALS 215
F +D FQ+ + EA GS+V+V+APT +GKT++A+ A +A QR + FYTTP+KALS
Sbjct: 14 FELDAFQQDANEALEAGSNVLVAAPTGAGKTVVADFAIY--LAQQRNVKAFYTTPIKALS 71
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+ + + +G + VGLLTGD++IN EA I++MTTE+LRNMLY+ +++ +
Sbjct: 72 NQKYHDLVDMYGADKVGLLTGDTSINSEADIVVMTTEVLRNMLYEHSTTLNA------LG 125
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELIT 335
++LDEVHYL+D RG +WEE+II+ P+ V+II LSATV+N ++ A WI + G T+L+
Sbjct: 126 YVILDEVHYLADRFRGPIWEEVIIHLPQSVRIIGLSATVSNVEDFADWIESVRGDTKLVV 185
Query: 336 SSRRPVPLTWYF------STKTALLPL-----LDEKGKHMNRKLSLNYLQLSTSEVKPYK 384
S RPVPL Y T+ L L + E+ MN +L +L E + +
Sbjct: 186 SEHRPVPLDQYVLLQKDPRTEPELFDLYCRDDMGEQTVKMNARLMNRLDELDRMEARRAR 245
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
+ R+ R+ V ++Q + + V+D L L MLPA
Sbjct: 246 -ADTHGRSERRQDRGGKRKFVRKPERYQPRRWA-----------VVDELNFL---GMLPA 290
Query: 445 IWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVRE 492
I+F+F+R GCD AV+ + L DE EM E +L + + L+ R
Sbjct: 291 IYFVFSRNGCDEAVEQCLNAGLRLTTDEEALHIRKIVDEMIEGQLTREDLKTLHFSQFR- 349
Query: 493 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
L +G AAHHAG + ++K +E LF+ GL+K VFATETLA GINMPAR+ V+ L
Sbjct: 350 ---YALEEGFAAHHAGMIALFKQIVERLFEEGLIKCVFATETLALGINMPARSVVVEKLE 406
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
K +G + LT E Q+ GRAGRRGID G+ ++V E L V PL S
Sbjct: 407 KYNGTGIVPLTPGEYTQLTGRAGRRGIDTIGNAIVVDHRDFKPETAVALSSKRVYPLHSS 466
Query: 613 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 672
F A++ M +NLL N SD E AR ++ SF + + +
Sbjct: 467 FKATFNMAVNLL---------NSSD----------YETARDTLDHSFAQWEANESAWDLE 507
Query: 673 DELCKIQKETDVLTSEISDDAIDR----KSRRLLSEAAYKEMANLQEELKAEKRFRTELR 728
+ K++K + +DA D + R LS+ E L+ E+ F++
Sbjct: 508 ARIDKLRKAIAGYEEAMGNDAGDMVELLRIRMKLSDLQKNERRRLKHEV-----FKSNEE 562
Query: 729 RRMELKRFSALKDILKDFENGH 750
R +R A LK+ E H
Sbjct: 563 RSRAFRRLDAQIAQLKEQEANH 584
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 17/189 (8%)
Query: 967 KRLTKRIEQIEPSGWKEFLRISN---VIHETRALDINTQVIFPLGETAAAIR---GENEL 1020
+RL R E S ++F RI + V+ D N + + L E +R E +L
Sbjct: 610 ERLEYRYESRTSSVARQFDRICHSLEVLGYLETADENGHIDYRLTEYGQLLRRLYTERDL 669
Query: 1021 WLAMVLRNKILLDLKPAQLAAVCASLV-----SEGIKVRLWKNNSSIYEPSTTVINVINV 1075
LA + + I DL +LAAV +SL+ EG + R + P V+ N
Sbjct: 670 VLAQAITHGIFDDLNAPELAAVMSSLLYEPRRGEGGEPRRYPGG-----PRGRVMQAANA 724
Query: 1076 LDEHRSSFLELQEKHGVE-IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLR 1134
L + + L E +G+E LD ++ WA G + E++ + GD R +
Sbjct: 725 LRDMDGQIIALCEANGLENYLQPLDFGIVDLMYNWAYGDSLSEVLEHSDMTGGDFVRTAK 784
Query: 1135 RTIDLLAQI 1143
R D+L QI
Sbjct: 785 RIADVLQQI 793
>gi|190405440|gb|EDV08707.1| antiviral helicase SKI2 [Saccharomyces cerevisiae RM11-1a]
gi|323353725|gb|EGA85581.1| Ski2p [Saccharomyces cerevisiae VL3]
Length = 1287
Score = 321 bits (822), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 215/633 (33%), Positives = 334/633 (52%), Gaps = 87/633 (13%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V L ++++ F +E+I A + F +D FQ+ ++ +G SV V+A TS+GK
Sbjct: 301 EWAHVVDLNHKIENF-DELIP--NPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 357
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A N + YT+P+KALSNQKFR+F+ETF D N+GL+TGD IN +A L
Sbjct: 358 TVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCL 417
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V+
Sbjct: 418 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 471
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-- 364
I LSATV N E A WIG+ K +I++ +RPVPL K L+P++++ + +
Sbjct: 472 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEA 531
Query: 365 NRKLSLNYLQLSTSEVKPYKD----GGS--------------------------RRRNSR 394
N + L +++ P K GGS R SR
Sbjct: 532 NFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRGGRGGRGNSTRGGANRGGSR 591
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
+ SN F Q SK + P++++ +LR R++LP + F+F+++ C
Sbjct: 592 GAGAIGSNK-RKFFTQDGPSKKTW--------PEIVN---YLRKRELLPMVVFVFSKKRC 639
Query: 455 DAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAVREPAIKGLL-KGVAAHHAGC 509
+ +LE N + E S++ + ++ R + D + + LL +G+A HH G
Sbjct: 640 EEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGL 699
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LPI K IE LF +G +KV+FATET A G+N+P RT + SS+ K +G +LT E Q
Sbjct: 700 LPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQ 759
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNLLAGAK 628
MAGRAGRRG+D+ G V+++ + K + GV L SQF +Y M+LNLL
Sbjct: 760 MAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLR--- 816
Query: 629 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL--- 685
++AL+ ++++ SF + + ++ +Q+E +
Sbjct: 817 ----------IEALR-------VEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYK 859
Query: 686 TSEISDDAIDRKSRRLLSEAAYKE-MANLQEEL 717
+ EI D+ I++ +L AYKE NL +E+
Sbjct: 860 SCEICDNDIEKFLELML---AYKEATVNLMQEM 889
>gi|418420273|ref|ZP_12993454.1| ATP-dependent DNA helicase HelY [Mycobacterium abscessus subsp.
bolletii BD]
gi|364000110|gb|EHM21311.1| ATP-dependent DNA helicase HelY [Mycobacterium abscessus subsp.
bolletii BD]
Length = 914
Score = 321 bits (822), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 209/544 (38%), Positives = 284/544 (52%), Gaps = 50/544 (9%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + A G V+V APT +GKT++ E A +A R+ FYTTP+KALSNQ
Sbjct: 10 FALDPFQVRACTALENGHGVLVCAPTGAGKTIVGEFAVHLALAAGRKCFYTTPIKALSNQ 69
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K + +G VGLLTGDS+IN +A +++MTTE+LRNMLY + L + +
Sbjct: 70 KHNDLVSVYGPEKVGLLTGDSSINSDAPVVVMTTEVLRNMLY------ADSPALHGLSHV 123
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVH+L+D RG VWEE+I++ P++V + LSATV+NA+E GWI + G T ++
Sbjct: 124 VMDEVHFLADRFRGAVWEEVILHLPEDVALASLSATVSNAEEFGGWIKTVRGDTTVVVDE 183
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP-YKDGGSRRRNSRKH 396
RPVPL + L L D + + R+ S + S+V P ++RR + +
Sbjct: 184 TRPVPLWQHVMVGRRLFDLFDGD-EPLGRRASGG--TGNPSQVDPDLTRYIAQRRQADRF 240
Query: 397 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
AD + Q + R P+VI L +LPAI FIF+R GCD
Sbjct: 241 ADFDRPRRRGPQ---QRTSRPPTLYRPPSRPEVIT---RLDEDGLLPAITFIFSRAGCDG 294
Query: 457 AV-QYLED-CNLLDECEMSEVELALKRFRILYPDAV---------REPAIKGLLKGVAAH 505
AV Q L L E E E+ + R P+A RE GLL+G+AAH
Sbjct: 295 AVAQCLRSRLRLTTEEERREIVAIIDRRTEGLPEADLDVLGYWQWRE----GLLRGIAAH 350
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP+++ +EELF +GLVK VFATETLA GINMPART VL L K LT
Sbjct: 351 HAGMLPVFRHTVEELFTKGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHAALTPG 410
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E Q+ GRAGRRGID GH V++ TP E L PL S F SY M +NL
Sbjct: 411 EYTQLTGRAGRRGIDVEGHAVVLWTPEVEPTEIAGLASTRTFPLRSSFAPSYNMTINL-- 468
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 685
+H + AR+L+E+SF Y ++ + + +K D +
Sbjct: 469 ----VHRMGP-------------DPARELLERSFAQYQADRSVVGLVRGIERGRKMLDEI 511
Query: 686 TSEI 689
E+
Sbjct: 512 AGEL 515
Score = 42.0 bits (97), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 90/208 (43%), Gaps = 18/208 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL---GETAAA 1013
E+ R++ + +L K++ S + F RI ++ E ++ + ++ + G A
Sbjct: 693 ERYLRIERDNAQLQKKVASATNSLARTFDRILALLAERGYVEDSAELGMKVTQDGMLLAR 752
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
I E++L +A LR + LKPA+LAAV + ++ E S+ E T +
Sbjct: 753 IYSESDLLVAECLRRGLWAGLKPAELAAVASGVLYES----RGDTVSATGEAPTAALR-- 806
Query: 1074 NVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCALD 1125
L E + L +++H + +D F V WA+ + AL
Sbjct: 807 GALAETHRALGRLRRDEQQHHLSPTREIDEGFVAAVYRWATTGDLAASLEAAGDTGTALP 866
Query: 1126 DGDLARLLRRTIDLLAQIPK-LPDVDQR 1152
GD R R+ +DLL QI K PD + R
Sbjct: 867 AGDFVRWCRQVVDLLDQIHKAAPDAEVR 894
>gi|151940919|gb|EDN59301.1| superkiller [Saccharomyces cerevisiae YJM789]
Length = 1287
Score = 321 bits (822), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 215/633 (33%), Positives = 334/633 (52%), Gaps = 87/633 (13%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V L ++++ F +E+I A + F +D FQ+ ++ +G SV V+A TS+GK
Sbjct: 301 EWAHVVDLNHKIENF-DELIP--NPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 357
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A N + YT+P+KALSNQKFR+F+ETF D N+GL+TGD IN +A L
Sbjct: 358 TVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCL 417
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V+
Sbjct: 418 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 471
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-- 364
I LSATV N E A WIG+ K +I++ +RPVPL K L+P++++ + +
Sbjct: 472 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEA 531
Query: 365 NRKLSLNYLQLSTSEVKPYKD----GGS--------------------------RRRNSR 394
N + L +++ P K GGS R SR
Sbjct: 532 NFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRGGRGGRGNSTRGGANRGGSR 591
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
+ SN F Q SK + P++++ +LR R++LP + F+F+++ C
Sbjct: 592 GAGAIGSNK-RKFFTQDGPSKKTW--------PEIVN---YLRKRELLPMVVFVFSKKRC 639
Query: 455 DAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAVREPAIKGLL-KGVAAHHAGC 509
+ +LE N + E S++ + ++ R + D + + LL +G+A HH G
Sbjct: 640 EEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGL 699
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LPI K IE LF +G +KV+FATET A G+N+P RT + SS+ K +G +LT E Q
Sbjct: 700 LPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQ 759
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNLLAGAK 628
MAGRAGRRG+D+ G V+++ + K + GV L SQF +Y M+LNLL
Sbjct: 760 MAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLR--- 816
Query: 629 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL--- 685
++AL+ ++++ SF + + ++ +Q+E +
Sbjct: 817 ----------IEALR-------VEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYK 859
Query: 686 TSEISDDAIDRKSRRLLSEAAYKE-MANLQEEL 717
+ EI D+ I++ +L AYKE NL +E+
Sbjct: 860 SCEICDNDIEKFLELML---AYKEATVNLMQEM 889
>gi|410320|gb|AAA35049.1| antiviral protein [Saccharomyces cerevisiae]
Length = 1286
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 192/527 (36%), Positives = 297/527 (56%), Gaps = 43/527 (8%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V L ++++ F +E+I A F +D FQ+ ++ +G SV V+A TS+GK
Sbjct: 301 EWAHVVDLNHKIENF-DELIP--NPARSCPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 357
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A N + YT+P+KALSNQKFR+F+ETF D N+GL+TGD IN +A L
Sbjct: 358 TVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCL 417
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V+
Sbjct: 418 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 471
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-- 364
I LSATV N E A WIG+ K +I++ +RPVPL K L+P++++ + +
Sbjct: 472 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEA 531
Query: 365 NRKLSLNYLQLSTSEVKPYK--------------------DG-GSRRRNSRKHADMNSNN 403
N + L +++ P K DG G R ++R A+ +
Sbjct: 532 NFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSR 591
Query: 404 IVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED 463
+ G ++ + + + P++++ +LR R++LP + F+F+++ C+ +LE
Sbjct: 592 GAGAIGSNKRKFFTQDGPSKKTWPEIVN---YLRKRELLPMVVFVFSKKRCEEYADWLEG 648
Query: 464 CNLLDECEMSE----VELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIE 518
N + E S+ +E ++ R + D + + LL +G+A HH G LPI K IE
Sbjct: 649 INFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIE 708
Query: 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578
LF +G +KV+FATET A G+N+P RT + SS+ K +G +LT E F +AGRAGRRG
Sbjct: 709 ILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGE-FTLAGRAGRRG 767
Query: 579 IDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNLL 624
+D+ G V+++ + K + GV L SQF +Y M+LNLL
Sbjct: 768 LDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLL 814
>gi|259148376|emb|CAY81623.1| Ski2p [Saccharomyces cerevisiae EC1118]
gi|365764188|gb|EHN05713.1| Ski2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1287
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 215/633 (33%), Positives = 334/633 (52%), Gaps = 87/633 (13%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V L ++++ F +E+I A + F +D FQ+ ++ +G SV V+A TS+GK
Sbjct: 301 EWAHVVDLNHKIENF-DELIP--NPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 357
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A N + YT+P+KALSNQKFR+F+ETF D N+GL+TGD IN +A L
Sbjct: 358 TVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCL 417
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V+
Sbjct: 418 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 471
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-- 364
I LSATV N E A WIG+ K +I++ +RPVPL K L+P++++ + +
Sbjct: 472 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEA 531
Query: 365 NRKLSLNYLQLSTSEVKPYKD----GGS--------------------------RRRNSR 394
N + L +++ P K GGS R SR
Sbjct: 532 NFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRGGRGGRGNSTRGGANRGGSR 591
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
+ SN F Q SK + P++++ +LR R++LP + F+F+++ C
Sbjct: 592 GAGAIGSNK-RKFFTQDGPSKKTW--------PEIVN---YLRKRELLPMVVFVFSKKRC 639
Query: 455 DAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAVREPAIKGLL-KGVAAHHAGC 509
+ +LE N + E S++ + ++ R + D + + LL +G+A HH G
Sbjct: 640 EEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGL 699
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LPI K IE LF +G +KV+FATET A G+N+P RT + SS+ K +G +LT E Q
Sbjct: 700 LPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQ 759
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNLLAGAK 628
MAGRAGRRG+D+ G V+++ + K + GV L SQF +Y M+LNLL
Sbjct: 760 MAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLR--- 816
Query: 629 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL--- 685
++AL+ ++++ SF + + ++ +Q+E +
Sbjct: 817 ----------IEALR-------VEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYK 859
Query: 686 TSEISDDAIDRKSRRLLSEAAYKE-MANLQEEL 717
+ EI D+ I++ +L AYKE NL +E+
Sbjct: 860 SCEICDNDIEKFLELML---AYKEATVNLMQEM 889
>gi|429758766|ref|ZP_19291279.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 181 str. F0379]
gi|429172980|gb|EKY14517.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 181 str. F0379]
Length = 900
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 196/537 (36%), Positives = 293/537 (54%), Gaps = 73/537 (13%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F D FQ +++A G SV+V+APT +GKT++ E A +++ R FYTTP+KALSNQ
Sbjct: 40 FTPDHFQIQAMDALEAGHSVLVAAPTGAGKTVVGEFAVALSLSTGSRAFYTTPIKALSNQ 99
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
KF +F++ +G+ VGLLTGD++IN +A I++MTTE+LRNM+Y + L ++ +
Sbjct: 100 KFTDFQKRYGEARVGLLTGDTSINPDAPIIVMTTEVLRNMIYMG-------ADLSNLSHV 152
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
VLDEVHYL+D RG VWEE++I+ P+ ++I LSATV+NA+E WIGQ+ G ++I S
Sbjct: 153 VLDEVHYLADRFRGPVWEEVLIHLPQHTKVIALSATVSNAEEFGEWIGQVRGSCDVIISE 212
Query: 338 RRPVPLTWYFSTKTALLPLL--DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 395
RPVPL + L + +G +++L+ L + + RR + R+
Sbjct: 213 TRPVPLFQHMLVDGELYDVYAPSRRGSGQSQRLNPELLYACSPQ--------GRRAHQRR 264
Query: 396 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCD 455
RS+ VI L ++LPAI FIF+R GC+
Sbjct: 265 F--------------------------RSRPATVIT----LDRANLLPAIVFIFSRAGCE 294
Query: 456 AAVQYL--EDCNLLDECEMSEVELALKRFRILYPD---AVR--EPAIKGLLKGVAAHHAG 508
AV+ + L + + ++ + + P AV + IK L +G+AAHHAG
Sbjct: 295 DAVREVIASGVTLTNRSQAEQIRRIAEEATAMIPPEDYAVLGIDSWIKALERGIAAHHAG 354
Query: 509 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 568
LP+ K +E+LF GL+++V+ATETLA GINMPAR+ V+ SL K + ++L++ E
Sbjct: 355 LLPLMKETVEKLFSMGLIRLVYATETLALGINMPARSVVIESLQKWNGAEHVRLSAGEFT 414
Query: 569 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 628
Q++GRAGRRGID GHVV+ EE L PLVS F +Y MV+NLLA
Sbjct: 415 QLSGRAGRRGIDVEGHVVVSGRRDISPEEVAALASKRTYPLVSAFHPTYNMVVNLLA--- 471
Query: 629 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 685
H + ++ RK +E SF + + ++ +++E D L
Sbjct: 472 --HSTRKA--------------TRKALESSFAQFQADSSVVNLAQSARALERELDCL 512
Score = 42.0 bits (97), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 11/187 (5%)
Query: 961 RLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENEL 1020
R A ++L KRI+ S ++F R+ + R + ++ G+ I G+ +L
Sbjct: 692 RKNAEYEKLLKRIDGRTNSVAQQFDRVCEGL--DRMGFLKNDLVTDSGQLLRRIFGDRDL 749
Query: 1021 WLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHR 1080
+ LR + L +LAA+ ++ V + S+ EP T + + E
Sbjct: 750 IVVEALRRGVWDRLSAPELAAIVSTCVYQS-----RGEESAAVEPWTAASSALAQAWEET 804
Query: 1081 SSF----LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 1136
S + +++ GV LD + V AWA+G T + L GD R +R+
Sbjct: 805 LSLSQAVMSVEKSVGVPQSPELDPGLAQAVMAWANGATLTTAIWGTPLLAGDFVRWIRQV 864
Query: 1137 IDLLAQI 1143
+DLL QI
Sbjct: 865 VDLLDQI 871
>gi|255325684|ref|ZP_05366781.1| dead/deah box helicase [Corynebacterium tuberculostearicum SK141]
gi|255297294|gb|EET76614.1| dead/deah box helicase [Corynebacterium tuberculostearicum SK141]
Length = 938
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 203/571 (35%), Positives = 293/571 (51%), Gaps = 68/571 (11%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + + +D+FQ +A G V+V APT +GKT++ E A ++ + FYT
Sbjct: 6 LDSFTAALPYPLDEFQVKGCQAVENGHGVLVCAPTGAGKTIVGEFAVSLALSRGTKCFYT 65
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + E G+ VGLLTGD +IN +A+I++MTTE+LRNM+Y +E
Sbjct: 66 TPIKALSNQKYHDLVEEHGEEAVGLLTGDVSINSDAEIVVMTTEVLRNMIY-------AE 118
Query: 269 SGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
S D + +V+DE+H+L+D SRG VWEE+I+ V II LSATV+N++E W+ +
Sbjct: 119 SAALDRLTHVVMDEIHFLADASRGAVWEEVILNLADHVSIIGLSATVSNSEEFGDWLSTV 178
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV----KP 382
G T +I S RPVPL + + PL + E G +N +L +L +
Sbjct: 179 RGDTTVIVSEHRPVPLDQWMMLGRKIYPLFEPESGGQVNAELERRIQRLEAGDTDDGRAD 238
Query: 383 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
YK G R +R S G+ ++ + R P+V+ L +S+DML
Sbjct: 239 YKSGKGFRARARHKGGGRSEFHGKGRGRSGAARQQ-DRYRPLGRPEVLKVL---QSQDML 294
Query: 443 PAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE---------VE---------LALKRFR 483
PAI FIF+R GCD A+ Q L +L E ++ VE L KR+R
Sbjct: 295 PAITFIFSRAGCDGALYQCLRSRMVLTSQEEAQQIKDIVDAGVEGIPEEDLQVLDFKRWR 354
Query: 484 ILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 543
+ L +G AAHHAG LP ++ +E+LF RGLV+ VFATETLA GINMPA
Sbjct: 355 ------------EALSRGFAAHHAGMLPAFRHIVEDLFVRGLVRAVFATETLALGINMPA 402
Query: 544 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 603
RT VL L K + LT + Q+ GRAGRRGID G+ V+ P + L
Sbjct: 403 RTVVLEKLIKFNGEAHVDLTPGQYTQLTGRAGRRGIDTLGNAVVQWAPAMDPRQVAGLAS 462
Query: 604 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 663
PL+S F Y M +NLL EE+ +L+E+SF +
Sbjct: 463 TRTYPLISTFAPGYNMAINLLGML-------------------GFEESLRLLEKSFAQFQ 503
Query: 664 GSNVMLAAKDELCKIQKETDVLTSEISDDAI 694
++ E+ + + L +++ DDA+
Sbjct: 504 ADGSVVEETREIERAEHRVRELRNQL-DDAV 533
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 22/224 (9%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDIN------TQVIFPLGET 1010
+K+ R + +L ++ + + + F RI +++ E ++ T VI GE
Sbjct: 716 QKLARRERDRDKLQSKVNKATDTLGRTFERIVDLLAEMDYVEFTGVGADRTPVITEEGER 775
Query: 1011 AAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVI 1070
A I E++L +A L+ I +L PA+LA V + E K ++ +P
Sbjct: 776 LAKIHSESDLLVAQCLKRGIWDELDPAELAGVASLCCFENRK-------ATSGQPEAATE 828
Query: 1071 NVINVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-----DC 1122
+ + ++ + EL +++H + ++ F+ V WA+G M
Sbjct: 829 RMADAMNATWRVYTELTADEQRHRLPPTREPEAGFALAVHQWAAGAPLGYCMAAANEAGA 888
Query: 1123 ALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
L GD R R+ IDLL Q+ K D +Q+NA A + + R
Sbjct: 889 ELTPGDFVRWCRQVIDLLQQVAKT-GYDGEIQRNARRAIDAIQR 931
>gi|418050320|ref|ZP_12688406.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
gi|353187944|gb|EHB53465.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
Length = 920
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 214/604 (35%), Positives = 301/604 (49%), Gaps = 65/604 (10%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E + + FR+D FQ + EA RG V+V APT +GKT++ E A +A R+ FYTTP
Sbjct: 10 EFSELLTFRLDPFQVQACEALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGRKCFYTTP 69
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK + +G N+GLLTGD ++N +A +++MTTE+LRNMLY +
Sbjct: 70 IKALSNQKHNDLVRRYGAENIGLLTGDQSVNGDAPVVVMTTEVLRNMLY------AGAET 123
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DEVH+L+D RG VWEE+I++ P++V+++ LSATV+NA+E GWI + G
Sbjct: 124 LRALSFVVMDEVHFLADRMRGAVWEEVILHLPEDVRLVGLSATVSNAEEFGGWIQTVRGD 183
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLD---EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
T ++ RPVPL + L L D E +H+ + ++
Sbjct: 184 TTVVVDEHRPVPLWQHVLVGKRLFDLFDYDREGKQHLVDPDLIRHI-------------- 229
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+ RR + + D R P VI + L +LPAI F
Sbjct: 230 AHRREAERLTDWEPRRRGPG-----RPGGRSGLYRPPSRPDVIAS---LDREGLLPAITF 281
Query: 448 IFNRRGCDAAVQYL--EDCNLLDECEMSEV---------ELALKRFRILYPDAVREPAIK 496
IF+R GCDAAV+ L D+ E + +LA +L RE
Sbjct: 282 IFSRAGCDAAVKQCLRSPLKLTDDEERKRIAEVIDRRCGDLADSDLVVLDYYEWRE---- 337
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
GLL+G+AAHHAG LP+++ +EELF GLVK VFATETLA GINMPART VL L K
Sbjct: 338 GLLRGLAAHHAGMLPVFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLEKLVKFNG 397
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
+ LT E Q+ GRAGRRGID GH V++ P E L PL S F S
Sbjct: 398 EQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVLWHPDVEPAEVAGLASTRTFPLKSSFAPS 457
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELC 676
Y M +NL+ Q G E+A L+E+SF Y ++ +
Sbjct: 458 YNMTINLVN-----------------QMG--PEQAHALLERSFAQYQADRSVVGLVRGVE 498
Query: 677 KIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRF 736
+ +K + +E+ D R + A + E +A+ R RR+ +
Sbjct: 499 RGEKMLGEIAAELGWDRRANPDREPPILDYVRLRAKISERERAQSRASRLQRRQATAEAL 558
Query: 737 SALK 740
SAL+
Sbjct: 559 SALR 562
>gi|343927930|ref|ZP_08767396.1| putative helicase [Gordonia alkanivorans NBRC 16433]
gi|343762153|dbj|GAA14322.1| putative helicase [Gordonia alkanivorans NBRC 16433]
Length = 942
Score = 320 bits (821), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 211/560 (37%), Positives = 298/560 (53%), Gaps = 51/560 (9%)
Query: 146 MIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205
M +D S DF +D FQR + EA G V+V APT +GKT++ E A +A +
Sbjct: 1 MSQLDAFTSRLDFGLDPFQRRACEALEAGHGVLVCAPTGAGKTIVGEFAVHLALAGGTKC 60
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
FYTTP+KALSNQK+ + G +VGLLTGDS+IN +A I++MTTE++RNM+Y
Sbjct: 61 FYTTPIKALSNQKYADLAAVHGHESVGLLTGDSSINPDAPIVVMTTEVVRNMIY------ 114
Query: 266 SSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
+ES D + +V+DEVH+L+D RG VWEE+I++ V+++ LSATV+NA+E WI
Sbjct: 115 -AESRALDGLSHVVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLSATVSNAEEFGEWI 173
Query: 325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKH-MNRKLSLNYLQLSTSEVKPY 383
+ G T +I RPVPL+ + + L D + +RK S V P
Sbjct: 174 QTVRGDTSVIVDEHRPVPLSQHMLVGQRMFDLFDPADRDPADRK-------GSRPRVNP- 225
Query: 384 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDM 441
+R+ R + + +S G+ + R + P + + + L +
Sbjct: 226 ----ELKRHIRHRILLAEDERDSSRGRGRGGGGGQPRRRDGRGPLLSRPNLVGRLDREGL 281
Query: 442 LPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELAL-KRFRILYPDAVREPAIK-- 496
LPAI FIF+R GCDAA+ Q L LL E +EV+ + +R L P ++
Sbjct: 282 LPAIGFIFSRAGCDAALAQCLRSGIALLTPEEAAEVDAVVDRRLTELSPSDADVLGVQEW 341
Query: 497 --GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554
GL +G+A+HHAG LP ++ +EELF RGLV++VFATETLA GINMPAR+ VL L K
Sbjct: 342 REGLRRGLASHHAGMLPTFRHAVEELFVRGLVRMVFATETLALGINMPARSVVLERLVKY 401
Query: 555 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 614
+ LT E Q+ GRAGRRGID GH V+V TP EE L A PL S F+
Sbjct: 402 NGESHVDLTPGEFTQLTGRAGRRGIDVEGHAVVVWTPEVVPEEVAGLAGARTFPLRSSFS 461
Query: 615 ASYGMVLNLLAGAKVMHLSNESDDMKALQAGR-SLEEARKLVEQSFGNYVGSNVMLAAKD 673
Y M +NLL GR L+ AR+L+ +SF + ++
Sbjct: 462 PEYNMAVNLL--------------------GRLGLDGARELLHRSFAQFQADRSVVGLAR 501
Query: 674 ELCKIQKETDVLTSEISDDA 693
+L + Q+ L E++ A
Sbjct: 502 KLHESQRALRKLDGELARAA 521
>gi|323303729|gb|EGA57515.1| Ski2p [Saccharomyces cerevisiae FostersB]
Length = 1287
Score = 320 bits (821), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 215/633 (33%), Positives = 334/633 (52%), Gaps = 87/633 (13%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V L ++++ F +E+I A + F +D FQ+ ++ +G SV V+A TS+GK
Sbjct: 301 EWAHVVDLNHKIENF-DELIP--NPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 357
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A N + YT+P+KALSNQKFR+F+ETF D N+GL+TGD IN +A L
Sbjct: 358 TVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCL 417
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V+
Sbjct: 418 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 471
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-- 364
I LSATV N E A WIG+ K +I++ +RPVPL K L+P++++ + +
Sbjct: 472 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEA 531
Query: 365 NRKLSLNYLQLSTSEVKPYKD----GGS--------------------------RRRNSR 394
N + L +++ P K GGS R SR
Sbjct: 532 NFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRGGRGGRGNSTRGGANRGGSR 591
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
+ SN F Q SK + P++++ +LR R++LP + F+F+++ C
Sbjct: 592 GAGAIGSNK-RKFFTQDGPSKKTW--------PEIVN---YLRKRELLPMVVFVFSKKRC 639
Query: 455 DAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAVREPAIKGLL-KGVAAHHAGC 509
+ +LE N + E S++ + ++ R + D + + LL +G+A HH G
Sbjct: 640 EEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGL 699
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LPI K IE LF +G +KV+FATET A G+N+P RT + SS+ K +G +LT E Q
Sbjct: 700 LPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQ 759
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNLLAGAK 628
MAGRAGRRG+D+ G V+++ + K + GV L SQF +Y M+LNLL
Sbjct: 760 MAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLR--- 816
Query: 629 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL--- 685
++AL+ ++++ SF + + ++ +Q+E +
Sbjct: 817 ----------IEALR-------VEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYK 859
Query: 686 TSEISDDAIDRKSRRLLSEAAYKE-MANLQEEL 717
+ EI D+ I++ +L AYKE NL +E+
Sbjct: 860 SCEICDNDIEKFLELML---AYKEATVNLMQEM 889
>gi|344998672|ref|YP_004801526.1| DSH domain-containing protein [Streptomyces sp. SirexAA-E]
gi|344314298|gb|AEN08986.1| DSH domain protein [Streptomyces sp. SirexAA-E]
Length = 943
Score = 320 bits (821), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 217/628 (34%), Positives = 320/628 (50%), Gaps = 98/628 (15%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 31 LYDFPLDPFQIEACKALEAGKGVLVAAPTGSGKTIVGEFAVHLALEQGRKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQKF + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 91 SNQKFADLARRYGADKVGLLTGDNSVNADAPVVVMTTEVLRNMLY------AGSQALVGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P V ++ LSATV+NA+E W+ + G T++I
Sbjct: 145 GYVVMDEVHYLSDRFRGAVWEEVIIHLPASVTLVSLSATVSNAEEFGDWLDTVRGDTQVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMN-----RKLSLNYLQLSTSEVKPYKDGGSR 389
S RPVPL + + L +E+ H R+++ + ++L+ E + + R
Sbjct: 205 VSEHRPVPLWQHVMAGRRMYDLFEEETDHGGRGTGRREVNPDLVRLARMENQRGYNPRER 264
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
RR + + + + + I P+VID L + +LPAI FIF
Sbjct: 265 RRGK-----------MVREADRERERRARSRIWTPSRPEVID---RLDAEGLLPAITFIF 310
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----PA---------- 494
+R C+AAVQ +C + + L + R L + V E P
Sbjct: 311 SRAACEAAVQ---------QCLAAGLRLNDEDKRRLVREIVEERTASIPGEDLHVLGYYE 361
Query: 495 -IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 362 WLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVK 421
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE--PLVS 611
+T E Q+ GRAGRRGID GH V++ G + AG PL S
Sbjct: 422 WNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGMDPTGLAGLAGTRTYPLRS 479
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 671
F SY M +NL+ Q GR +R+L+E SF + ++
Sbjct: 480 SFRPSYNMAVNLVH-----------------QFGR--HRSRELLETSFAQFQADRSVVGI 520
Query: 672 KDELCK----IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTEL 727
++ + ++ + +T + D ++E A L+ +LK + TEL
Sbjct: 521 SRQVQRNEEGLEGYREGMTCHLGD---------------FEEYARLRRDLKDRE---TEL 562
Query: 728 RRRMELKRFSALKDILKDFENG---HLP 752
++ +R A L+ + G H+P
Sbjct: 563 AKQGAAQRRVAAASSLEKLKPGDVIHVP 590
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 16/195 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 1015
E+ RL+ +++L KRIE + + F RI ++ E LD + + G A +
Sbjct: 723 ERYHRLQRDTRQLEKRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTGNGRRLARLY 779
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG------IKVRLWKNNSSIYEPSTTV 1069
GE +L + LR+ + L PA+LAA ++LV E + +L + + +
Sbjct: 780 GELDLLASECLRDGVWEGLNPAELAACVSALVYEARQADDAVAPKLPSGPAKV--AMGEM 837
Query: 1070 INVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 1128
+ + LD F + E G P D F+ V WASG T E++ + + GD
Sbjct: 838 VRIWGRLDALEEDFKISQTEGVGQREP---DLGFAWAVYMWASGRTLDEVLREAEMPAGD 894
Query: 1129 LARLLRRTIDLLAQI 1143
R ++ ID+L QI
Sbjct: 895 FVRWCKQVIDVLGQI 909
>gi|441515098|ref|ZP_20996906.1| putative helicase [Gordonia amicalis NBRC 100051]
gi|441450085|dbj|GAC54867.1| putative helicase [Gordonia amicalis NBRC 100051]
Length = 942
Score = 320 bits (821), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 208/559 (37%), Positives = 300/559 (53%), Gaps = 49/559 (8%)
Query: 146 MIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205
M +D S +F +D FQR + EA G V+V APT +GKT++ E A +A +
Sbjct: 1 MSQLDAFTSRLEFGLDPFQRRACEALEAGHGVLVCAPTGAGKTIVGEFAVHLALAGGTKC 60
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
FYTTP+KALSNQK+ + G +VGLLTGDS+IN +A I++MTTE++RNM+Y
Sbjct: 61 FYTTPIKALSNQKYADLAAVHGHESVGLLTGDSSINPDAPIVVMTTEVVRNMIY------ 114
Query: 266 SSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
+ES D + +V+DEVH+L+D RG VWEE+I++ V+++ LSATV+NA+E WI
Sbjct: 115 -AESRALDGLSHVVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLSATVSNAEEFGDWI 173
Query: 325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 384
+ G T +I RPVPL+ + + L D + + + S V P
Sbjct: 174 QTVRGDTSVIVDEHRPVPLSQHMLVGQRMFDLFDPADRDPAHR------KGSRPRVNP-- 225
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDML 442
+R+ R + + +S G+ + ++ R + P + + + L +L
Sbjct: 226 ---ELKRHIRHRILLADDERESSRGRGRRGGGEVSRRRDGRGPLLSRPNLVARLDREGLL 282
Query: 443 PAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELAL-KRFRILYPDAVREPAIK--- 496
PAI FIF+R GCDAA+ Q L LL E++EV+ + +R L P ++
Sbjct: 283 PAIGFIFSRAGCDAALAQCLRSGIALLTPEEVAEVDAVVDRRLTELSPSDADVLGVQEWR 342
Query: 497 -GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
GL +G+A+HHAG LP ++ +EELF RGLV++VFATETLA GINMPAR+ VL L K
Sbjct: 343 EGLRRGLASHHAGMLPTFRHAVEELFVRGLVRMVFATETLALGINMPARSVVLERLVKYN 402
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 615
+ LT E Q+ GRAGRRGID GH V+V TP EE L A PL S F+
Sbjct: 403 GESHVDLTPGEFTQLTGRAGRRGIDIEGHAVVVWTPEVVPEEVAGLAGARTFPLRSSFSP 462
Query: 616 SYGMVLNLLAGAKVMHLSNESDDMKALQAGR-SLEEARKLVEQSFGNYVGSNVMLAAKDE 674
Y M +NLL GR L+ AR+L+ +SF + ++ +
Sbjct: 463 EYNMAVNLL--------------------GRLGLDGARELLHRSFAQFQADRSVVGQARK 502
Query: 675 LCKIQKETDVLTSEISDDA 693
L + Q+ L E++ A
Sbjct: 503 LHESQRALRKLDGELARAA 521
>gi|254569054|ref|XP_002491637.1| Putative RNA helicase [Komagataella pastoris GS115]
gi|238031434|emb|CAY69357.1| Putative RNA helicase [Komagataella pastoris GS115]
gi|328351858|emb|CCA38257.1| antiviral helicase SKI2 [Komagataella pastoris CBS 7435]
Length = 1233
Score = 320 bits (820), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 204/558 (36%), Positives = 306/558 (54%), Gaps = 41/558 (7%)
Query: 86 DEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNE 145
+E+A E D++ D + SD F + + R+ W + L ++++ F +E
Sbjct: 225 EEDAIQEGDEI-----DALLPSDISFSKRPKTERPQAARQ---WAHLVDLDHKLENF-HE 275
Query: 146 MIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205
+ V +A + F +D FQ+ +I +G SV V+A TS+GKT++AE N +
Sbjct: 276 L--VPNMARTWPFELDTFQQEAIYHLEKGDSVFVAAHTSAGKTVVAEYVIAMANINMTKA 333
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
YT+P+KALSNQKFR+F+ F D +VGL+TGD IN+EA LIMTTEILR+MLY+ ++
Sbjct: 334 IYTSPIKALSNQKFRDFKHDFEDIDVGLITGDVQINQEANCLIMTTEILRSMLYRGADVI 393
Query: 266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325
DV+ ++ DEVHY++DI RG VWEE+II P+ V+I+ LSATV N E A W+G
Sbjct: 394 R------DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPEHVKIVMLSATVPNTMEFASWVG 447
Query: 326 QIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 384
+ K +I++ +RP+PL + K+ L ++D + + N+ S VKP K
Sbjct: 448 RTKQKDVYVISTPKRPIPLEIFVWAKSDLFKVVDSNRNFLEK----NFQAHSDVLVKPKK 503
Query: 385 D-----GGSR--RRNSR--KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV---IDT 432
+ G+R R N+R S++ V+S G+ S N + P +
Sbjct: 504 EVTGSQAGNRGGRGNARGASRGGRGSSSTVSSRGRGG-SANVGTRFTKRDGPNKKTWTNL 562
Query: 433 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 492
+ +LRS D+LP++ F+F++ C+ L+ N E S + + + + RE
Sbjct: 563 VQYLRSHDLLPSVIFVFSKARCEEYADSLQGVNFCTGSERSRIHMFIDKAVSRLKKEDRE 622
Query: 493 -PAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
P I + L +G+A HH G LPI K IE LF + L+KV+FATET A G+N+P RT V
Sbjct: 623 LPQIMKMREMLSRGIAVHHGGLLPIMKEVIEILFAKTLIKVLFATETFAMGLNLPTRTVV 682
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
S L K +G L E QM+GRAGRRG+D G V+++ + + + GV
Sbjct: 683 FSELRKHDGTGFRNLLPGEFTQMSGRAGRRGLDTTGTVIVMSYNEPLESKPFQQITLGVP 742
Query: 608 -PLVSQFTASYGMVLNLL 624
LVSQF +Y M+LNLL
Sbjct: 743 TKLVSQFRLTYNMILNLL 760
>gi|386866978|ref|YP_006279972.1| helicase [Bifidobacterium animalis subsp. animalis ATCC 25527]
gi|385701061|gb|AFI63009.1| putative helicase [Bifidobacterium animalis subsp. animalis ATCC
25527]
Length = 829
Score = 320 bits (820), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 225/622 (36%), Positives = 322/622 (51%), Gaps = 80/622 (12%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI--FYTTPLKALS 215
F +D FQ+ + EA GS+V+V+APT +GKT++A+ A +A QR + FYTTP+KALS
Sbjct: 14 FELDAFQQDANEALEAGSNVLVAAPTGAGKTVVADFAIY--LAQQRNVKAFYTTPIKALS 71
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+ + + +G + VGLLTGD++IN EA I++MTTE+LRNMLY+ +++ +
Sbjct: 72 NQKYHDLVDMYGADKVGLLTGDTSINSEADIVVMTTEVLRNMLYEHSTTLNA------LG 125
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELIT 335
++LDEVHYL+D RG +WEE+II+ P+ V+II LSATV+N ++ A WI + G T+L+
Sbjct: 126 YVILDEVHYLADRFRGPIWEEVIIHLPQSVRIIGLSATVSNVEDFADWIESVRGDTKLVV 185
Query: 336 SSRRPVPLTWYF------STKTALLPL-----LDEKGKHMNRKLSLNYLQLSTSEVKPYK 384
S RPVPL Y T+ L L + E+ MN +L +L E
Sbjct: 186 SEHRPVPLDQYVLLQKDPRTEPELFDLYRRDDMGEQTVKMNARLMNRLDELDRME----- 240
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
+RR + H D + + K RR V+D L L MLPA
Sbjct: 241 ---ARRARADTH-DRPERRRDRGGKRKFVRKPERYQPRRW---AVVDELNFL---GMLPA 290
Query: 445 IWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVRE 492
I+F+F+R GCD AV + L DE EM E +L + + L+ R
Sbjct: 291 IYFVFSRNGCDEAVDQCLNAGLRLTTDEEALRIRKIVDEMIEGQLTREDLKTLHFSQFR- 349
Query: 493 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
L +G AAHHAG + ++K +E LF+ GL+K VFATETLA GINMPAR+ V+ L
Sbjct: 350 ---YALEEGFAAHHAGMIALFKQIVERLFEEGLIKCVFATETLALGINMPARSVVVEKLE 406
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
K +G + LT E Q+ GRAGRRGID G+ ++V Y E L V PL S
Sbjct: 407 KYNGTGIVPLTPGEYTQLTGRAGRRGIDTIGNAIVVDHRYFKPETAVALSSKRVYPLHSS 466
Query: 613 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 672
F A++ M +NLL N SD E AR ++ SF + + +
Sbjct: 467 FKATFNMAVNLL---------NSSD----------YETARDTLDHSFAQWEANESAWDLE 507
Query: 673 DELCKIQKETDVLTSEISDDAIDR----KSRRLLSEAAYKEMANLQEELKAEKRFRTELR 728
+ K++K +++DA D + R LS+ E L+ E+ F++
Sbjct: 508 ACIGKLRKAIAGYEEAMANDAGDMVELLRIRMKLSDLQKNERRRLKHEV-----FKSNEE 562
Query: 729 RRMELKRFSALKDILKDFENGH 750
R +R A LK+ E H
Sbjct: 563 RSRAFRRLDAQIARLKEQEANH 584
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 19/228 (8%)
Query: 928 KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRI 987
++ARLK++ A K+ +K+ ++ K +RL R E S ++F RI
Sbjct: 573 QIARLKEQEANHPA-KQSPDFKTLMKWGHRWVRETK-ELERLEYRYESRTSSVARQFDRI 630
Query: 988 SN---VIHETRALDINTQVIFPLGETAAAIR---GENELWLAMVLRNKILLDLKPAQLAA 1041
+ V+ D N + L E +R E +L LA + + I DL +LAA
Sbjct: 631 CHSLEVLGYLETADENGHTDYRLTEYGQLLRRLYTERDLVLAQAITHGIFDDLNAPELAA 690
Query: 1042 VCASLV-----SEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVE-IP 1095
V +SL+ EG + R + P V+ N L + + L E +G+E
Sbjct: 691 VMSSLLYEPRRGEGGEPRRYPGG-----PRGRVMQAANALRDMDGQIIALCEANGLENYL 745
Query: 1096 CCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 1143
LD ++ WA G + E++ + GD R +R D+L QI
Sbjct: 746 QPLDFGIVDLMYNWAYGDSLSEVLEHSDMTGGDFVRTAKRIADVLQQI 793
>gi|383807297|ref|ZP_09962857.1| putative helicase [Candidatus Aquiluna sp. IMCC13023]
gi|383298651|gb|EIC91266.1| putative helicase [Candidatus Aquiluna sp. IMCC13023]
Length = 815
Score = 320 bits (820), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 188/476 (39%), Positives = 265/476 (55%), Gaps = 36/476 (7%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + A G+ V+V+APT +GKT++ E A +A +++FYTTP+KALSNQ
Sbjct: 36 FPLDDFQEQACLALESGAGVLVAAPTGAGKTIVGEFAIHLALAKGQKVFYTTPIKALSNQ 95
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
KF E +G + VGLLTGDS N EA+I++MTTE+LRNM+Y ++ + L ++ +
Sbjct: 96 KFAELAARYGKDRVGLLTGDSNSNSEAEIVVMTTEVLRNMIY------ATSTTLMELGYV 149
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVHYL+D RG VWEE+I++ PK+V+++ LSATV+NA+E W+ ++ G TE+I S
Sbjct: 150 VMDEVHYLADRFRGAVWEEVILHLPKDVKVVSLSATVSNAEEFGAWLAEVRGNTEIIVSE 209
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RPVPL + LL L E G + R V P + R H
Sbjct: 210 IRPVPLHQHVMFGDELLELF-ESGSNKTR-------------VNPELLQKHQARQRAPHR 255
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAA 457
+N+ GQ + +S V ++D ++LPAI+FIF+R GC+A+
Sbjct: 256 GPKNNSRSNYRGQ---PDRRFPRLEKSDVVDLLDRA------ELLPAIFFIFSRVGCEAS 306
Query: 458 VQYLEDCN--LLDECEMSEV-ELALKRFRILYPDAVREPA----IKGLLKGVAAHHAGCL 510
V L E E+ ++A R + + + + L +G AAHHAG L
Sbjct: 307 VSACRRAGVRLTTSEEAKEIRKIAEARCGSIADEDLDTLGYFDWLSSLERGYAAHHAGML 366
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
P +K +EELF R LV+VVFATETLA GINMPART VL L K R+ +T+ E Q+
Sbjct: 367 PAFKEVVEELFLRKLVRVVFATETLALGINMPARTVVLERLDKFNGEARVSITAGEYTQL 426
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
GRAGRRGID GH V++ L PL S F +Y M +NL++
Sbjct: 427 TGRAGRRGIDTEGHAVILWGQQLDPNMVAGLASKRTYPLNSSFRPTYNMAVNLISA 482
>gi|403737667|ref|ZP_10950395.1| putative helicase [Austwickia chelonae NBRC 105200]
gi|403191779|dbj|GAB77165.1| putative helicase [Austwickia chelonae NBRC 105200]
Length = 946
Score = 320 bits (820), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 210/590 (35%), Positives = 296/590 (50%), Gaps = 65/590 (11%)
Query: 117 SSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSS 176
SSPA E + R ++ ++ EF A+ Y+F +D FQ + +A G
Sbjct: 2 SSPA----ERYAAARKQRRSSQTHEF----------AAGYEFPLDDFQIRACQAVEEGRG 47
Query: 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236
V+V+APT +GKT++ E A + ++ FYTTP+KALSNQK+ + G++ VGLLTG
Sbjct: 48 VLVAAPTGAGKTIVGEFAVHLALTQGKKAFYTTPIKALSNQKYTDLCRRHGNDKVGLLTG 107
Query: 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEE 296
DS IN A I++MTTE+LRNMLY V S L + +V+DEVHYL+D RG VWEE
Sbjct: 108 DSVINGHAPIVVMTTEVLRNMLY-----VESPD-LAGLGYVVMDEVHYLADRFRGAVWEE 161
Query: 297 IIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPL 356
+II+ P V +I LSATV+NA+E W+G++ G TE++ RPVPL + + L
Sbjct: 162 VIIHLPDHVSVISLSATVSNAEEFGAWLGEVRGDTEIVVEEFRPVPLWQHMMVGHTVHDL 221
Query: 357 LDEKGKHMNRKLSLNYLQLSTSEVKP-YKDG--GSRRRNSRK------HADMNSNNIVTS 407
E ++ T + P D G RR R+ +
Sbjct: 222 FAETDDPRTPTHRHHHGPPQTLTINPDLLDAIIGQRRSTDRRGRLEDIGGPRGRRGKIRR 281
Query: 408 FGQHQLSKNSINAIRRSQVP-------QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQY 460
H + +S A + P VID+ L +LPAI FIF+R GCDAAVQ
Sbjct: 282 RPGHPRTNHSTPAETHPRPPGRPHSRATVIDS---LDRAGLLPAITFIFSRAGCDAAVQQ 338
Query: 461 L--EDCNLLDECEMSEVELAL-KRFRILYPDAVR----EPAIKGLLKGVAAHHAGCLPIW 513
L NL+ E + + + +R L PD + + GL +G AAHHAG LP +
Sbjct: 339 LLQAGTNLIPEDQARHIHRTVEERVASLAPDDLTVLGYRDFLAGLTRGFAAHHAGMLPTF 398
Query: 514 KSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGR 573
+ +EELF GL++ VFATETLA GINMPAR+ +L L K + +T E Q+ GR
Sbjct: 399 REIVEELFTAGLIRAVFATETLALGINMPARSVILEKLVKYNGEAHVGITPAEYTQLTGR 458
Query: 574 AGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLS 633
AGRRG+D GH V++ P + L PL S F + M +NL+A
Sbjct: 459 AGRRGVDIEGHAVVLWNPQIDPDAVGGLASTRTYPLRSSFRPNPNMAVNLVA-------- 510
Query: 634 NESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 683
GR + AR ++E SF Y ++ + + Q+ D
Sbjct: 511 ---------TFGR--DRARNVLETSFAQYQADRSVVGMNRTIHQHQEALD 549
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 3/187 (1%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL+ + L +++ S + F R+ +++ E L + GE I
Sbjct: 732 ERWWRLERETAALRRKVAGRTNSIARTFDRLCDILTELGYLTDGGTTVTSAGERLRRIYN 791
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E +L +A LR+ + L L PA+LAA+ ++LV E R +NN P+ V + +
Sbjct: 792 ERDLLVAECLRHDLWLTLSPAELAAMVSTLVHE---PRREENNPFPTMPTAAVGEAYDAM 848
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 1136
+ S + G+ D+ S ++ WA+G ++ L GD R ++
Sbjct: 849 LDLWSGLDDRLTARGLPTTAPPDAGLSAIMHRWATGSRLESVLDGSDLAPGDFVRRCKQV 908
Query: 1137 IDLLAQI 1143
+DLL QI
Sbjct: 909 VDLLDQI 915
>gi|311739423|ref|ZP_07713258.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305239|gb|EFQ81307.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 938
Score = 320 bits (820), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 203/571 (35%), Positives = 293/571 (51%), Gaps = 68/571 (11%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + + +D+FQ +A G V+V APT +GKT++ E A ++ + FYT
Sbjct: 6 LDSFTAALPYPLDEFQVKGCQAVENGHGVLVCAPTGAGKTIVGEFAVSLALSRGTKCFYT 65
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + E G+ VGLLTGD +IN +A+I++MTTE+LRNM+Y +E
Sbjct: 66 TPIKALSNQKYHDLVEEHGEEAVGLLTGDVSINSDAEIVVMTTEVLRNMIY-------AE 118
Query: 269 SGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
S D + +V+DE+H+L+D SRG VWEE+I+ V II LSATV+N++E W+ +
Sbjct: 119 SPALDRLTHVVMDEIHFLADASRGAVWEEVILNLADHVSIIGLSATVSNSEEFGDWLSTV 178
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV----KP 382
G T +I S RPVPL + + PL + E G +N +L +L +
Sbjct: 179 RGDTTVIVSEHRPVPLDQWMMLGRKIYPLFEPESGGQVNSELERRIQRLEAGDTDDGRAD 238
Query: 383 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
YK G R +R S G+ ++ + R P+V+ L +S+DML
Sbjct: 239 YKSGKGFRARARHKGGGRSEFHGKGKGRSGAARQQ-DRYRPLGRPEVLKVL---QSQDML 294
Query: 443 PAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE---------VE---------LALKRFR 483
PAI FIF+R GCD A+ Q L +L E ++ VE L KR+R
Sbjct: 295 PAITFIFSRAGCDGALYQCLRSRMVLTSQEEAQQIKDIVDAGVEGIPEEDLQVLDFKRWR 354
Query: 484 ILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 543
+ L +G AAHHAG LP ++ +E+LF RGLV+ VFATETLA GINMPA
Sbjct: 355 ------------EALSRGFAAHHAGMLPAFRHIVEDLFVRGLVRAVFATETLALGINMPA 402
Query: 544 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 603
RT VL L K + LT + Q+ GRAGRRGID G+ V+ P + L
Sbjct: 403 RTVVLEKLIKFNGEAHVDLTPGQYTQLTGRAGRRGIDTLGNAVVQWAPAMDPRQVAGLAS 462
Query: 604 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 663
PL+S F Y M +NLL EE+ +L+E+SF +
Sbjct: 463 TRTYPLISTFAPGYNMAINLLGML-------------------GFEESLRLLEKSFAQFQ 503
Query: 664 GSNVMLAAKDELCKIQKETDVLTSEISDDAI 694
++ E+ + + L +++ DDA+
Sbjct: 504 ADGSVVEETREIERAEHRVRELRNQL-DDAV 533
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 22/224 (9%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHE------TRALDINTQVIFPLGET 1010
+K+ R + +L ++ + + + F RI +++ E T A T VI GE
Sbjct: 716 QKLARRERDRDKLQSKVNKATDTLGRTFERIVDLLAEMDYVEFTGAGADRTPVITEEGER 775
Query: 1011 AAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVI 1070
A I E++L +A L+ I +L PA+LA V + E K ++ +P
Sbjct: 776 LAKIHSESDLLVAQCLKRGIWDELDPAELAGVASLCCFENRK-------ATSGQPEAATE 828
Query: 1071 NVINVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-----DC 1122
+ + ++ + EL +++H + ++ F+ V WA+G M
Sbjct: 829 RMADAMNATWRVYTELTADEQRHRLPPTREPEAGFALAVHQWAAGAPLGYCMAAANEAGA 888
Query: 1123 ALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
L GD R R+ IDLL Q+ K D +Q+NA A + + R
Sbjct: 889 ELTPGDFVRWCRQVIDLLQQVAKT-GYDGEIQRNARRAIDAIQR 931
>gi|408533158|emb|CCK31332.1| putative helicase helY [Streptomyces davawensis JCM 4913]
Length = 951
Score = 320 bits (820), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 221/617 (35%), Positives = 319/617 (51%), Gaps = 83/617 (13%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 46 MYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALQQGKKCFYTTPIKAL 105
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +G++ VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 106 SNQKYSDLCRRYGNDKVGLLTGDNSVNSDAPVVVMTTEVLRNMLY------AGSQTLIGL 159
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 160 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 219
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK--PYKDGGSRRRN 392
S RPVPL + + L +E G+ + ++ + +L+ E + Y+D RR
Sbjct: 220 VSEHRPVPLFQHVLAGRRMYDLFEE-GEGSKKAVNPDLTRLARMEAQRPSYQD----RRR 274
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R + + + + + P+VI+ L + +LPAI FIF+R
Sbjct: 275 GRAMREADRER----------ERRQRSRVWTPGRPEVIE---RLDAEGLLPAITFIFSRA 321
Query: 453 GCDAAVQYLEDCNL-LDECEMSEVELALKRFRI-------LYPDAVREPAIKGLLKGVAA 504
C+AAVQ L L++ E AL R L+ E ++GL +G+AA
Sbjct: 322 ACEAAVQQCLYAGLRLNDEEARHKVRALVEERTASIPTEDLHVLGYYE-WLEGLERGIAA 380
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T
Sbjct: 381 HHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITP 440
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E Q+ GRAGRRGID GH V++ E L PL S F SY M +NL+
Sbjct: 441 GEYTQLTGRAGRRGIDVEGHAVVLWQRGMSPEHLAGLAGTRTYPLRSSFKPSYNMAVNLV 500
Query: 625 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY------VGSNVMLAAKDELCKI 678
Q GR +R+L+E SF + VG + + +E +
Sbjct: 501 E-----------------QFGR--HRSRELLETSFAQFQADKSVVGISRQVQRNEEGLEG 541
Query: 679 QKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSA 738
KE+ +T + D + E A L+ ELK + TEL R+ +R +
Sbjct: 542 YKES--MTCHLGD---------------FDEYARLRRELKDRE---TELARQGAAQRRAE 581
Query: 739 LKDILKDFENG---HLP 752
L+ + G H+P
Sbjct: 582 AAVALEKLKPGDVIHVP 598
Score = 45.8 bits (107), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 16/195 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL + +L +RIE + + F RI ++ E L + + G+ A + G
Sbjct: 731 ERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTELDYLRADE--VTEHGKRLARLYG 788
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT-------V 1069
E +L + LR + L PA+LAA ++LV E R+ + + PS +
Sbjct: 789 ELDLLASECLRAGVWEGLAPAELAACVSALVYE---ARVGDDAMAPKLPSGKAKAALGEM 845
Query: 1070 INVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 1128
+ + LD F + E G P D F+ WASG E++ + + GD
Sbjct: 846 VRIWGRLDALEEDFRINQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAGD 902
Query: 1129 LARLLRRTIDLLAQI 1143
R ++ ID+L QI
Sbjct: 903 FVRWCKQVIDVLGQI 917
>gi|363750700|ref|XP_003645567.1| hypothetical protein Ecym_3257 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889201|gb|AET38750.1| Hypothetical protein Ecym_3257 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1274
Score = 320 bits (820), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 200/524 (38%), Positives = 291/524 (55%), Gaps = 44/524 (8%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
KW + L + + F +E+I A + F +D FQ+ +I +G SV V+A TS+GK
Sbjct: 296 KWAHIVDLSHTIDNF-HELIP--NPARTWPFELDGFQKEAIYHMEQGDSVFVAAHTSAGK 352
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A + N + YT+P+KALSNQKFR+F+E F D +VGL+TGD IN EA L
Sbjct: 353 TVVAEYAIAMSKRNMTKTIYTSPIKALSNQKFRDFKEDFTDVDVGLITGDVQINSEANCL 412
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P V+
Sbjct: 413 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPHHVKF 466
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366
I LSATV N E A WIG+ K +I++++RPVPL K L+P++D+ +R
Sbjct: 467 ILLSATVPNTYEFATWIGRTKQKNIYVISTAKRPVPLEINIWAKDTLIPVIDQ-----DR 521
Query: 367 KLSLNYLQ--------LSTSEVKPYKD-GGSRRRNS---RKHADMNSNNIVTSFGQHQLS 414
K SL + +++S+ P + G+ +NS R N N + G +
Sbjct: 522 KFSLKAFKKHADLLTGVASSKTIPRRGAAGAIDKNSSGTRGGKTTNRGNKTITHGSRGVG 581
Query: 415 KNSINA---IRRSQV-----PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL 466
N RR P++++ +L++R++LP + F+F+++ C+ +LE +
Sbjct: 582 AKGSNRSSFFRRDGPNKQTWPKLVN---YLKARELLPVVIFVFSKKRCEEYADFLESTDF 638
Query: 467 LDECEMSEV----ELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELF 521
E S+V E ++ R + D + I+ LL +G+A HH G LPI K IE LF
Sbjct: 639 STAKEKSQVYMFIEKSISRLKKEDRDLPQIMKIRSLLERGIAIHHGGLLPIVKELIEMLF 698
Query: 522 QRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDN 581
+G VKV+FATET A G+N+P RT V S + K + L E QMAGRAGRRG D
Sbjct: 699 AKGFVKVLFATETFAMGLNLPTRTVVFSEIEKHDGNSLRTLNPGEFTQMAGRAGRRGKDP 758
Query: 582 RGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNLL 624
G V+++ E K + GV L SQF +Y M+LNLL
Sbjct: 759 IGTVIIMTYNNPIDELPFKEVTLGVPTRLKSQFRLTYNMILNLL 802
>gi|227549294|ref|ZP_03979343.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
gi|227078613|gb|EEI16576.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
Length = 922
Score = 320 bits (819), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 203/563 (36%), Positives = 293/563 (52%), Gaps = 70/563 (12%)
Query: 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209
DE + F +D FQ + +A + V+V APT SGKT++ E A ++ + FYTT
Sbjct: 11 DEFRANQGFELDDFQVEACQAVEQDRGVLVCAPTGSGKTVVGEFAVSLAISRGTKCFYTT 70
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSES 269
P+KALSNQK+ + +G+ VGLLTGD +IN A++++MTTE+LRNM+Y +ES
Sbjct: 71 PIKALSNQKYHDLVAQYGEEAVGLLTGDVSINGSAEVVVMTTEVLRNMIY-------AES 123
Query: 270 GLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D + +V+DE+H+L+D RG VWEE+I+ V +I LSATV+N++E W+G +
Sbjct: 124 PQLDRLSHVVMDEIHFLADRDRGAVWEEVILNLDDSVSVIGLSATVSNSEEFGEWLGTVR 183
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVKPYKDG 386
G T +I S RPVPL+ Y + PL E G +NR L ++ + D
Sbjct: 184 GDTAVIVSEHRPVPLSQYMMVGRKVFPLF-EPGTDGRVNRDLEDAIERIESGRA----DE 238
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
G RR+ + S + G+ + I+ I+ P+V+ L + RDMLPAI
Sbjct: 239 G--RRDFEEGRGFRSR----TAGRRSGRERPIDRIKPVGRPEVVSAL---QGRDMLPAIV 289
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL-------- 498
FIF+R GCD A L +C S EL + + V + I+G+
Sbjct: 290 FIFSRAGCDGA---------LFQCLRSRKELTTPEEQQRIAEIV-DKGIEGIPDEDLQVL 339
Query: 499 ---------LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
++G A+HHAG LP +K +EELF +GLV VVFATETLA GINMPART VL
Sbjct: 340 NYRQLRTAWMRGFASHHAGLLPAFKHIVEELFVQGLVCVVFATETLALGINMPARTVVLE 399
Query: 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
L K + LT + Q+ GRAGRRGID+ G+ V+ P +E L PL
Sbjct: 400 KLVKFNGEAHVDLTPGQYTQLTGRAGRRGIDHIGNAVVQWAPAMDPKEVAGLASTRTYPL 459
Query: 610 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVML 669
+S FT Y M +N+L M A + +LVEQSF + ++
Sbjct: 460 ISPFTPGYNMAINML-------------KMNGFDA------SIRLVEQSFAQFQTDRSVV 500
Query: 670 AAKDELCKIQKETDVLTSEISDD 692
E+ +++ + D L ++ D
Sbjct: 501 GEVREIERLRAKVDSLRGQLERD 523
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 15/214 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI--NTQVIFPLGETAAAI 1014
E++ R + R ++L + ++ S + F RI ++ E ++I + GE A+I
Sbjct: 704 EELVREQRRLQKLQRTVDSSTDSLGRTFERIIGLLTEMDYVEIVDGEPKVTEEGERLASI 763
Query: 1015 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 1074
+L +A L+ + L PA+LA V + V E K + S P+ + +N
Sbjct: 764 HSVADLLVAQCLKRGVWDFLDPAELAGVASMCVFENRKATM----GSAEVPTENMAAAMN 819
Query: 1075 VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDL 1129
+ + +++H + + D+ FS V W +G + A L GD
Sbjct: 820 STMRIYNELVADEQRHQLPVSRMPDASFSLSVHQWTAGAPLGYCLAAAAESGAELTPGDF 879
Query: 1130 ARLLRRTIDLLAQIPKL---PDVDQRLQKNAVDA 1160
R R+ IDLL Q+ K P++ K A+DA
Sbjct: 880 VRWCRQAIDLLEQVAKTGYNPEIRHAANK-AIDA 912
>gi|400974533|ref|ZP_10801764.1| ATP-dependent RNA helicase [Salinibacterium sp. PAMC 21357]
Length = 810
Score = 320 bits (819), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 190/475 (40%), Positives = 264/475 (55%), Gaps = 35/475 (7%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAV-ATVANQRRIFYTTPLKALSN 216
F +D+FQ + + SV+V+APT +GKT+IAE A A ++FYT P+KALSN
Sbjct: 31 FDLDEFQVLACQVVEDDKSVLVAAPTGAGKTIIAEFAIYRAMQLEGPKVFYTAPMKALSN 90
Query: 217 QKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276
QKF+E +G NVGLLTGD+ +N A+I++MTTE+LRNMLY + L ++
Sbjct: 91 QKFQELVTEYGAENVGLLTGDTNVNASARIVVMTTEVLRNMLYAKSDL------LRNLST 144
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
+V+DEVH+L D RG VWEE+II+ P +V ++ LSATV+NA+E W+ + G TE+I S
Sbjct: 145 VVMDEVHFLGDRFRGAVWEEVIIHLPDDVHMVSLSATVSNAEEFGDWLQAVRGDTEVIVS 204
Query: 337 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 396
+RPVPL + + L+ L D G +++ +Q++ R R
Sbjct: 205 EQRPVPLEQHVLVSSKLIDLFDSSGLAATNRVNPELVQMA-------------RFGGRSQ 251
Query: 397 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
+ N N G+++ R + D + L S++++PAI+FIF+R GCD
Sbjct: 252 SVRNRKN----SGRYESRGGRPARTRMDRA----DVVAMLASKNLVPAIFFIFSRMGCDQ 303
Query: 457 AVQYL--EDCNLLDECEMSEV-ELALKRFRILYPDAVREPA----IKGLLKGVAAHHAGC 509
AV + L E E+ E+ R R L + + + GL +GVAAHHAG
Sbjct: 304 AVNQVLRAGVRLTTVQERDEIREIVEARCRTLLDEDLAVLGYWEWLNGLERGVAAHHAGM 363
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP +K +EELFQR LVK VFATETLA GINMPART VL L K R+ +T E Q
Sbjct: 364 LPAFKEVVEELFQRKLVKAVFATETLALGINMPARTVVLEKLEKFNGEARVPITPGEYTQ 423
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+ GRAGRRGID GH V+ + L PL S F +Y M +NL+
Sbjct: 424 LTGRAGRRGIDIEGHSVIQWVDGLDPQAVASLASRRTYPLNSSFKPTYNMAVNLI 478
>gi|386839157|ref|YP_006244215.1| helicase [Streptomyces hygroscopicus subsp. jinggangensis 5008]
gi|374099458|gb|AEY88342.1| helicase [Streptomyces hygroscopicus subsp. jinggangensis 5008]
gi|451792449|gb|AGF62498.1| helicase [Streptomyces hygroscopicus subsp. jinggangensis TL01]
Length = 950
Score = 320 bits (819), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 202/518 (38%), Positives = 282/518 (54%), Gaps = 54/518 (10%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 46 MYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALQQGKKCFYTTPIKAL 105
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +G VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 106 SNQKYADLCRRYGTGKVGLLTGDNSVNSDAPVVVMTTEVLRNMLY------AGSQTLLGL 159
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 160 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 219
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE-VKP-YKDGGSRRRN 392
S RPVPL + + L +E G+ + ++ + ++L+ E +P Y+D RR
Sbjct: 220 VSEHRPVPLFQHVLAGRRMYDLFEE-GEGHKKAVNPDLVRLARMEATRPSYQD----RRR 274
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R + + + + + P+VI+ L S +LPAI FIF+R
Sbjct: 275 GRAMREADRER----------ERRQRSRVWTPGRPEVIE---RLDSEGLLPAITFIFSRA 321
Query: 453 GCDAAVQYLEDCNL-LDECEMSEVELALKRFRI-------LYPDAVREPAIKGLLKGVAA 504
C+AAVQ L L++ E E AL R L+ E ++GL +G+AA
Sbjct: 322 ACEAAVQQCLYAGLRLNDEEAREQVRALVEERTASIPTEDLHVLGYYE-WLEGLERGIAA 380
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T
Sbjct: 381 HHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITP 440
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E Q+ GRAGRRGID GH V++ E L PL S F SY M +NL+
Sbjct: 441 GEYTQLTGRAGRRGIDVEGHAVVLWQRGMSPEHLAGLAGTRTYPLRSSFKPSYNMAVNLV 500
Query: 625 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
Q GR +R+L+E SF +
Sbjct: 501 E-----------------QFGR--HRSRELLETSFAQF 519
Score = 47.0 bits (110), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 18/196 (9%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 1015
E+ RL + +L +RIE + + F RI ++ E LD + + G+ A +
Sbjct: 731 ERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEHGKRLARLY 787
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT------- 1068
GE +L + LR ++ L PA+LAA ++LV E R+ + + PS
Sbjct: 788 GELDLLASECLRERVWEGLAPAELAACVSALVYE---ARVGDDAMAPKLPSGKAKAVLGE 844
Query: 1069 VINVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 1127
++ + LD F + E G P D F+ WASG E++ + + G
Sbjct: 845 MVRIWGRLDGLEEEFRINQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAG 901
Query: 1128 DLARLLRRTIDLLAQI 1143
D R ++ ID+L QI
Sbjct: 902 DFVRWCKQVIDVLGQI 917
>gi|317508594|ref|ZP_07966255.1| DEAD/DEAH box helicase, partial [Segniliparus rugosus ATCC BAA-974]
gi|316253138|gb|EFV12547.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
Length = 606
Score = 320 bits (819), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 215/607 (35%), Positives = 307/607 (50%), Gaps = 65/607 (10%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + A G +V APT +GKT++ E AA VA + FYTTP+KALSNQ
Sbjct: 28 FALDPFQEQACRAVQEGRGALVCAPTGAGKTIVGEFAASLAVAKGGKCFYTTPIKALSNQ 87
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K +F G + VGLLTGD ++N EA +++MTTE+LRNM+Y + L + +
Sbjct: 88 KHADFSALLGADRVGLLTGDVSVNSEAPVVVMTTEVLRNMIY------AHSPTLAGLSHV 141
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVHYL+D RG VWEE+I+ P+EV ++ LSATV NA+E W+ + G TE++
Sbjct: 142 VMDEVHYLADQFRGAVWEEVILNLPREVVVVSLSATVGNAEEFGEWLQAVRGDTEVVVEE 201
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RRP+PL+ + + L E +H R + LS +E RR A
Sbjct: 202 RRPIPLSQHVLVGDRMFDLEPEDPRHGERG---SDGALSKAE---------RRLRHELEA 249
Query: 398 DMNSNNIVTSF-------GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
+ + SF G+ ++ A R+ +P+ + L +LPAIWFIF+
Sbjct: 250 HIKQQEALASFEDPRRGRGRGGPPRDRRRAQGRTLLPRT-RVISKLEEERLLPAIWFIFS 308
Query: 451 RRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI------KGLLKGVA 503
R GCD AV Q L L E S AL R D+ + L +G+A
Sbjct: 309 RAGCDDAVAQCLRSPLRLISPEQSAEVRALIEERTAQLDSADLQVLGYDTWKSALERGIA 368
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
AHHAG +W+ +EELF +G+V+VVFATETLA G+NMPAR+ VL SL K + LT
Sbjct: 369 AHHAGMFTLWRHIVEELFVKGMVRVVFATETLALGVNMPARSVVLESLVKFNGESHVDLT 428
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E Q+ GRAGRRGID RGH VL P A +L + PL S F SY M +NL
Sbjct: 429 PGEYTQLTGRAGRRGIDTRGHAVLRWKPGVRAASMLRLTDSRTYPLRSSFRPSYNMSVNL 488
Query: 624 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 683
+ D A RS L+ QSF + + +A L + ++E
Sbjct: 489 I-------------DRIGPAASRS------LLAQSFAQFQTDRSVSSAAVVLARREQE-- 527
Query: 684 VLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELK-RFSALKDI 742
++R+++RL A+ + A++ + L + R+ R K + +++ D
Sbjct: 528 ----------LERETKRLDIAASPQSAADVLDYLANKAELRSGPARAQHRKGKAASVGDG 577
Query: 743 LKDFENG 749
L+ G
Sbjct: 578 LRALRRG 584
>gi|310287448|ref|YP_003938706.1| Helicase helY [Bifidobacterium bifidum S17]
gi|309251384|gb|ADO53132.1| Helicase helY [Bifidobacterium bifidum S17]
Length = 852
Score = 320 bits (819), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 199/514 (38%), Positives = 278/514 (54%), Gaps = 89/514 (17%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D FQ+ +I+A RG +V+V+APT +GKT++A+ A + FYTTP+
Sbjct: 39 FAATLPFDLDDFQQDAIDALERGENVLVAAPTGAGKTVVADFAMYLARERNVKAFYTTPI 98
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + +G ++VGLLTGD +IN EA I++MTTE+LRNMLY+ +++
Sbjct: 99 KALSNQKYHDLTAVYGADHVGLLTGDISINSEADIVVMTTEVLRNMLYEHSTTLNA---- 154
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ ++LDEVHYL+D RG VWEE+II+ P++V +I LSATV+N ++ + WI + G T
Sbjct: 155 --LRFVILDEVHYLADRFRGPVWEEVIIHLPRQVSVIGLSATVSNVEDFSSWISSVRGDT 212
Query: 332 ELITSSRRPVPLTWYF------STKTALLPLL--DEKGKH---MNRKLSLNYLQLSTSEV 380
+L+ S RRPVPL + T+ LL L D +G+ +N +L QL
Sbjct: 213 KLVVSERRPVPLEQHVLVQADDHTEPELLDLYRRDAQGEQTTKLNARLIDRLDQLDRQAA 272
Query: 381 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLR 437
+ SR R R H S+ + A R + P+ V+D L +L
Sbjct: 273 RRRGAENSRSRG-RGH-----------------SRGHVPAQRHT--PKRWAVVDELNYL- 311
Query: 438 SRDMLPAIWFIFNRRGCDAAVQYLEDC-----NLLDECEMSEVE---------------- 476
DMLP I+FIF+R GCD AV E C L E EM +
Sbjct: 312 --DMLPGIYFIFSRNGCDQAV---EQCINAGLELTTEDEMRRIRAIVDEMVAGQLSQEDL 366
Query: 477 --LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 534
L RFR L +G A+HHAG + +++ +E LF+ GLVK+VFATET
Sbjct: 367 KALQFSRFRF------------ALEEGFASHHAGMVALFRQIVERLFEEGLVKMVFATET 414
Query: 535 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----T 590
LA GINMPAR ++ L K SG + LT E Q+ GRAGRRGID GH ++V
Sbjct: 415 LALGINMPARCVIVEKLEKFNGSGHVPLTPGEFTQLTGRAGRRGIDTIGHAIVVDHRDFV 474
Query: 591 PYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
P A K ++ PL S F A++ M +NLL
Sbjct: 475 PATAAALSSKRVY----PLHSSFHATFNMAVNLL 504
Score = 48.1 bits (113), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 108/257 (42%), Gaps = 18/257 (7%)
Query: 921 NYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG 980
++E + LKK+ R ++ + +K+ I+ ++ +R+ R E S
Sbjct: 592 TFRELDQSIETLKKR-DREHPCRQCPDMQQHMKWGHRWIREMR-EYERVQHRYESRTGSV 649
Query: 981 WKEFLRISNVIHETRAL--DINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 1038
++F RI +++ + + D + G+ I E ++ LA L + L Q
Sbjct: 650 ARQFDRICSILEQLGYVKRDGTDMRLSEQGQLLRHIYSEQDIVLAEALERGMFDHLTARQ 709
Query: 1039 LAAVCASLVSE-----GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 1093
LAAV ++LV E G + R W I P V LD + L E G++
Sbjct: 710 LAAVLSALVFEARGGTGGEPRRWPGG--IQGP---VAQTSQSLDRLHAQLTMLCEDEGLD 764
Query: 1094 IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI----PKLPDV 1149
LD ++ WASG + ++ D + GD R +R D+L QI P LP
Sbjct: 765 DLQQLDFGIVDIMYDWASGNSLAYVLHDRDMTGGDFVRNAKRLSDILQQISAAEPYLPQG 824
Query: 1150 DQRLQKNAVDASNVMDR 1166
L + A +A +++R
Sbjct: 825 SAHLAQVAHEAMELVNR 841
>gi|145223682|ref|YP_001134360.1| DEAD/DEAH box helicase [Mycobacterium gilvum PYR-GCK]
gi|145216168|gb|ABP45572.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum
PYR-GCK]
Length = 921
Score = 320 bits (819), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 203/526 (38%), Positives = 272/526 (51%), Gaps = 68/526 (12%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
++ F +D FQR + EA +G V+V APT +GKT++ E A + R+ FYTTP+KA
Sbjct: 17 ALLPFSLDGFQRRACEALAQGHGVLVCAPTGAGKTVVGEFAVHLALEAGRKCFYTTPIKA 76
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD 273
LSNQK + +G +GLLTGD AIN +A I++MTTE+LRNMLY + L
Sbjct: 77 LSNQKHNDLVRRYGPERIGLLTGDQAINGDADIVVMTTEVLRNMLY------ADSPALHG 130
Query: 274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 333
+ +V+DEVH+L+D RG VWEE+I++ P+EV+++ LSATV+NA+E GWI + G T +
Sbjct: 131 LSHVVMDEVHFLADRMRGAVWEEVILHLPEEVRLVSLSATVSNAEEFGGWIKTVRGDTTV 190
Query: 334 ITSSRRPVPLTWYFSTKTALLPLLDEKGKH-MNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
+ RPVPL + LL L D +G R L ++ L + RR
Sbjct: 191 VVDEHRPVPLWQHVMVGRRLLDLFDYRGSGPSGRDLLVDPELLRHI---------AHRRE 241
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+ + D Q S R +VI L R +LPAI FIF+R
Sbjct: 242 AERLVDWQPRGRGRDRQGRQPS-----LYRTPGRAEVIGVLEQSR---LLPAITFIFSRA 293
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV-REPA---------------IK 496
GCDAAV+ +C S + L R + V R A +
Sbjct: 294 GCDAAVK---------QCLRSSLRLTTNEERARIAEIVDRRTADLNDTDLVVLDFHQWRE 344
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART VL L K
Sbjct: 345 GLLRGIAAHHAGMLPTFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKYNG 404
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
+ LT E Q+ GRAGRRGID GH V++ P E L PL S F +
Sbjct: 405 EQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVLWNPDVDPAEVAGLASTRTFPLRSSFAPT 464
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
Y M +NL+ Q G + +A +L+E+SF Y
Sbjct: 465 YNMTINLVH-----------------QMGPA--QAHRLLERSFAQY 491
>gi|306836089|ref|ZP_07469077.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
accolens ATCC 49726]
gi|304568026|gb|EFM43603.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
accolens ATCC 49726]
Length = 938
Score = 320 bits (819), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 203/571 (35%), Positives = 290/571 (50%), Gaps = 66/571 (11%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D A+ + +D+FQ EA G V+V APT +GKT++ E A ++ + FYT
Sbjct: 6 LDTFAAGLPYPLDEFQVQGCEAVENGQGVLVCAPTGAGKTVVGEFAVSLALSRGTKCFYT 65
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + G++ VGLLTGD +IN +A+I++MTTE+LRNM+Y +
Sbjct: 66 TPIKALSNQKYHDLVAEHGEDAVGLLTGDVSINSDAEIVVMTTEVLRNMIY------ADS 119
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L + +V+DE+H+L+D SRG VWEE+I+ V II LSATV+N++E W+ +
Sbjct: 120 PALDRLTHVVMDEIHFLADASRGAVWEEVILNLADHVSIIGLSATVSNSEEFGEWLATVR 179
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV----KPY 383
G T +I + RPVPL + + PL + E G +N +L +L + Y
Sbjct: 180 GDTSVIVTEHRPVPLDQWMMLGRKIYPLFEPESGGQVNSELERRIQRLEAGDSDDGRADY 239
Query: 384 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 443
K G R +R H + G S + R P+V+ L +S+DMLP
Sbjct: 240 KSGKGFRARAR-HKGGGRSEFHGKAGGRSGSSRPQDRYRPLGRPEVLKVL---QSQDMLP 295
Query: 444 AIWFIFNRRGCDAAV-QYLEDCNLLDECEMSE---------VE---------LALKRFRI 484
AI FIF+R GCD A+ Q L +L E +E VE L +R+R
Sbjct: 296 AITFIFSRAGCDGALYQCLRSRMVLTTQEEAEEIKAIVDAGVEGIPEEDLQVLDFRRWR- 354
Query: 485 LYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 544
+ L +G AAHHAG LP ++ +E+LF RGLV+ VFATETLA GINMPAR
Sbjct: 355 -----------EALSRGFAAHHAGMLPAFRHIVEDLFIRGLVRAVFATETLALGINMPAR 403
Query: 545 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 604
T VL L K + LT + Q+ GRAGRRGID G+ V+ P L
Sbjct: 404 TVVLEKLIKFNGEAHVDLTPGQYTQLTGRAGRRGIDTLGNAVVQWAPAMDPRFVAGLAST 463
Query: 605 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 664
PL+S F Y M +NLL E++ +L+E+SF +
Sbjct: 464 RTYPLISTFAPGYNMAINLLGML-------------------GFEDSLRLLEKSFAQFQA 504
Query: 665 SNVMLAAKDELCKIQKETDVLTSEISDDAID 695
++ EL + + L ++ DDA+D
Sbjct: 505 DGSVVEETRELERAEHRVRELREQL-DDAVD 534
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 22/224 (9%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDIN------TQVIFPLGET 1010
+K+ R + ++L ++ + + + F RI +++ E ++ + T VI GE
Sbjct: 716 QKLARRERDLEKLQAKVNKATDTLGRTFERIVDLLAEMDYVEFSGAGSDRTPVITEEGER 775
Query: 1011 AAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVI 1070
A I E++L +A L+ I +L PA+LA V + E K ++ +P
Sbjct: 776 LAKIHSESDLLVAQCLKRGIWDELDPAELAGVASLCCFENRK-------ATGGQPEAATD 828
Query: 1071 NVINVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-----DC 1122
+ + ++ + EL + +H + ++ F+ + WA+G M
Sbjct: 829 RMADAMNATWRIYTELSADERRHRLPPTREPEAGFALAIHQWAAGAPLGYCMAAANEAGA 888
Query: 1123 ALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
L GD R R+ +DLL QI K D ++Q+NA A + + R
Sbjct: 889 ELTPGDFVRWCRQVVDLLQQIAKT-GYDGQIQRNARRAIDAIQR 931
>gi|313140229|ref|ZP_07802422.1| superfamily protein RNA helicase [Bifidobacterium bifidum NCIMB
41171]
gi|313132739|gb|EFR50356.1| superfamily protein RNA helicase [Bifidobacterium bifidum NCIMB
41171]
Length = 859
Score = 320 bits (819), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 198/516 (38%), Positives = 279/516 (54%), Gaps = 93/516 (18%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D FQ+ +I+A RG +V+V+APT +GKT++A+ A + FYTTP+
Sbjct: 46 FAATLPFDLDDFQQDAIDALERGENVLVAAPTGAGKTVVADFAMYLARERNVKAFYTTPI 105
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + +G + VGLLTGD +IN EA I++MTTE+LRNMLY+ +++
Sbjct: 106 KALSNQKYHDLTAVYGADRVGLLTGDISINSEADIVVMTTEVLRNMLYEHSTTLNA---- 161
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ ++LDEVHYL+D RG VWEE+II+ P++V +I LSATV+N ++ + WI + G T
Sbjct: 162 --LRFVILDEVHYLADRFRGPVWEEVIIHLPRQVSVIGLSATVSNVEDFSSWISSVRGDT 219
Query: 332 ELITSSRRPVPLTWYF------STKTALLPLL--DEKGKH---MNRKL--SLNYLQLSTS 378
+L+ S RRPVPL + T+ LL L D +G+ +N +L L+ L +
Sbjct: 220 KLVVSERRPVPLEQHVLVQADDHTEPELLDLYRRDAQGEQTTKLNARLIDRLDQLDRQAA 279
Query: 379 EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWH 435
+ +D SR R S+ + A R + P+ V+D L +
Sbjct: 280 RRRGAEDSRSRGRGH--------------------SRGHVPAQRHT--PKRWAVVDELNY 317
Query: 436 LRSRDMLPAIWFIFNRRGCDAAVQYLEDC-----NLLDECEMSEVE-------------- 476
L DMLP I+FIF+R GCD AV E C L E EM +
Sbjct: 318 L---DMLPGIYFIFSRNGCDQAV---EQCINAGLELTTEDEMRRIRAIVDEMVAGQLSQE 371
Query: 477 ----LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 532
L RFR L +G A+HHAG + +++ +E LF+ GLVK+VFAT
Sbjct: 372 DLKALQFSRFRF------------ALEEGFASHHAGMVALFRQIVERLFEEGLVKMVFAT 419
Query: 533 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ--- 589
ETLA GINMPAR ++ L K SG + LT E Q+ GRAGRRGID GH ++V
Sbjct: 420 ETLALGINMPARCVIVEKLEKFNGSGHVPLTPGEFTQLTGRAGRRGIDTIGHAIVVDHRD 479
Query: 590 -TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
P A K ++ PL S F A++ M +NLL
Sbjct: 480 FVPATAAALSSKRVY----PLHSSFHATFNMAVNLL 511
Score = 47.4 bits (111), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 109/261 (41%), Gaps = 18/261 (6%)
Query: 921 NYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG 980
++E + LKK+ R ++ + +K+ I+ ++ +R+ R E S
Sbjct: 599 TFRELDQSIETLKKR-DREHPCRQCPDMQQHMKWGHRWIREMR-EYERVQHRYESRTGSV 656
Query: 981 WKEFLRISNVIHETRAL--DINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 1038
++F RI +++ + + D + G+ I E ++ LA L + L Q
Sbjct: 657 ARQFDRICSILEQLGYVKRDGTDMRLSEQGQLLRHIYSEQDIVLAEALERGMFDHLTARQ 716
Query: 1039 LAAVCASLVSE-----GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 1093
LAAV ++LV E G + R W I P V LD + L E G++
Sbjct: 717 LAAVLSALVFEARGGTGGEPRRWPGG--IQGP---VAQTSQSLDRLHAQLTMLCEDEGLD 771
Query: 1094 IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI----PKLPDV 1149
LD ++ WASG + ++ D + GD R +R D+L QI P LP
Sbjct: 772 DLQQLDFGIVDIMYDWASGNSLAYVLHDRDMTGGDFVRNAKRLSDILQQISAAEPYLPQG 831
Query: 1150 DQRLQKNAVDASNVMDRPPIS 1170
L + A A +++R ++
Sbjct: 832 SAHLAQVAHKAMELVNRGIVA 852
>gi|297198491|ref|ZP_06915888.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
gi|297147112|gb|EDY60182.2| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
Length = 947
Score = 319 bits (818), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 215/621 (34%), Positives = 318/621 (51%), Gaps = 91/621 (14%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 40 MYDFGLDPFQIEACKALEAGKGVLVAAPTGSGKTIVGEFAVHLALQQGKKCFYTTPIKAL 99
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 100 SNQKYADLSRRYGADKVGLLTGDNSVNSDAPVVVMTTEVLRNMLY------AGSQTLLGL 153
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G T++I
Sbjct: 154 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTQVI 213
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK--PYKDGGSRRRN 392
S RPVPL + + L +E G+ + ++ + +L+ E + Y+D RR
Sbjct: 214 VSEHRPVPLFQHVLAGRRMYDLFEE-GEGNKKAVNPDLARLARMEAQRPSYQD----RRR 268
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R + + + + + P+VI+ L + +LPAI FIF+R
Sbjct: 269 GRAMREADRER----------ERRQRSKVWTPSRPEVIE---RLDAEGLLPAITFIFSRA 315
Query: 453 GCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAVREPAI------------- 495
C+AAVQ +C + + L A R R L + R +I
Sbjct: 316 ACEAAVQ---------QCLYAGLRLNDDEARGRVRALVEE--RTASIPHEDLHVLGYYEW 364
Query: 496 -KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554
+GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 365 LEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKW 424
Query: 555 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 614
+T E Q+ GRAGRRGID GH V++ E L PL S F
Sbjct: 425 NGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGSSPEHLAGLAGTRTYPLRSSFK 484
Query: 615 ASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDE 674
SY M +NL+ Q GR +R+L+E SF + ++ +
Sbjct: 485 PSYNMAVNLVE-----------------QFGR--HRSRELLETSFAQFQADKSVVGISRQ 525
Query: 675 LCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELK 734
+ + ++ D + ++ D ++E A L+ ELK + TEL R+ +
Sbjct: 526 VQRNEEGLDGYKASMTCHLGD-----------FEEYAQLRRELKDRE---TELARQGVSQ 571
Query: 735 RFSALKDILKDFENG---HLP 752
R + L+ + G H+P
Sbjct: 572 RRAEAAVALEKLKPGDVIHVP 592
Score = 47.4 bits (111), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 96/223 (43%), Gaps = 22/223 (9%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL + +L +RIE + + F RI ++ E L + + G+ A + G
Sbjct: 725 ERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTELDYLRADE--VTEHGKRLARLYG 782
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSE--------GIKVRLWKNNSSIYEPSTT 1068
E +L + LR + L PA+LAA ++LV E KV K +++ E
Sbjct: 783 ELDLLASECLREGVWEGLGPAELAACVSALVYESRVGDDAMAPKVPSGKAKAALGE---- 838
Query: 1069 VINVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 1127
++ + LD F + E G P D F+ WASG E++ + + G
Sbjct: 839 MVRIWGRLDALEEDFRINQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAG 895
Query: 1128 DLARLLRRTIDLLAQIPKLPDVD----QRLQKNAVDASNVMDR 1166
D R ++ ID+L QI V + KNA A +++ R
Sbjct: 896 DFVRWCKQVIDVLGQISAAAPVSGGEGSTVAKNARKAVDLLLR 938
>gi|357402751|ref|YP_004914676.1| helicase helY [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|386358824|ref|YP_006057070.1| DSH domain-containing protein [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337769160|emb|CCB77873.1| putative helicase helY [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|365809332|gb|AEW97548.1| DSH domain protein [Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 947
Score = 319 bits (818), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 207/557 (37%), Positives = 289/557 (51%), Gaps = 63/557 (11%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 32 LYDFALDPFQIEACQAMEAGKGVLVAAPTGSGKTIVGEFAVHLALRAGRKCFYTTPIKAL 91
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + + +G VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 92 SNQKYADLVKRYGPGKVGLLTGDNSVNADAPVVVMTTEVLRNMLY------AGSQALSGL 145
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 146 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 205
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
S RPVPL + + L +EK + + V+P K
Sbjct: 206 VSEHRPVPLWQHVLAGRRMYDLFEEKSAAPD------------AAVRPGK---------- 243
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQ---------------VPQVIDTLWHLRSR 439
D+N + + + Q+ L N + RR P + + L +
Sbjct: 244 --LDVNPDLLRLARTQNTLGYNPRDRRRRGYEADRERERRQRNRIWTPGRPEVIERLDAE 301
Query: 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLL---DECEMSEVELALKRFRILYPDAVREPA-- 494
+LPAI FIF+R GC+AAVQ L DE +A +R + + +
Sbjct: 302 GLLPAITFIFSRAGCEAAVQQCLHAGLRLNDDEARAKVRAIAEERTAAIADEDLHVLGYF 361
Query: 495 --IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
++GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L
Sbjct: 362 EWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLV 421
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE--PLV 610
K +T E Q+ GRAGRRGID GH V++ G + AG PL
Sbjct: 422 KWNGETHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGLDPVALAGLAGTRTYPLR 479
Query: 611 SQFTASYGMVLNLLAGAKVMHLSNE--SDDMKALQAGRSLEEARKLV---EQSFGNYV-G 664
S F SY M +NL+ G H S E QA RS+ + V E+ Y G
Sbjct: 480 SSFRPSYNMAVNLV-GQFGRHRSRELLETSFAQFQADRSVVGITRQVQRNEEGLAGYREG 538
Query: 665 SNVMLAAKDELCKIQKE 681
L +E ++++E
Sbjct: 539 MTCHLGDFEEYGRLRRE 555
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 96/224 (42%), Gaps = 28/224 (12%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL+ ++ L +RIE + + F RI ++ E LD +T + G A + G
Sbjct: 729 ERYWRLQRDTQALQRRIEGRTNTIARTFDRICGLLTELGYLDGDT--VTEHGRRLARLYG 786
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E +L + LR + L PA+LAA ++LV E ++ + P N + L
Sbjct: 787 ELDLLASECLREGVWNGLGPAELAACASALVYES------RSADDMLAPKLPGGNARHAL 840
Query: 1077 --------------DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC 1122
DEHR ++ E G P D F+ WASG ++ D
Sbjct: 841 GEMVRIWGRLDALEDEHR---IKQSEGVGQREP---DLGFAWAAHRWASGHGLDAVLRDA 894
Query: 1123 ALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
+ GD R ++ ID+L QI + D ++ NA A + + R
Sbjct: 895 DMPAGDFVRWTKQLIDVLGQIAEAAPQDSPVRANARKAVDKLLR 938
>gi|315444009|ref|YP_004076888.1| superfamily II RNA helicase [Mycobacterium gilvum Spyr1]
gi|315262312|gb|ADT99053.1| superfamily II RNA helicase [Mycobacterium gilvum Spyr1]
Length = 921
Score = 319 bits (818), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 203/526 (38%), Positives = 272/526 (51%), Gaps = 68/526 (12%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
++ F +D FQR + EA +G V+V APT +GKT++ E A + R+ FYTTP+KA
Sbjct: 17 ALLPFSLDGFQRRACEALAQGHGVLVCAPTGAGKTVVGEFAVHLALEAGRKCFYTTPIKA 76
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD 273
LSNQK + +G +GLLTGD AIN +A I++MTTE+LRNMLY + L
Sbjct: 77 LSNQKHNDLVRRYGPERIGLLTGDQAINGDADIVVMTTEVLRNMLY------ADSPALHG 130
Query: 274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 333
+ +V+DEVH+L+D RG VWEE+I++ P+EV+++ LSATV+NA+E GWI + G T +
Sbjct: 131 LSHVVMDEVHFLADRMRGAVWEEVILHLPEEVRLVSLSATVSNAEEFGGWIKTVRGDTTV 190
Query: 334 ITSSRRPVPLTWYFSTKTALLPLLDEKGKH-MNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
+ RPVPL + LL L D +G R L ++ L + RR
Sbjct: 191 VVDEHRPVPLWQHVMVGRRLLDLFDYRGSGPSGRDLLVDPELLRHI---------AHRRE 241
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+ + D Q S R +VI L R +LPAI FIF+R
Sbjct: 242 AERLVDWQPRGRGRDRQGRQPS-----LYRTPGRAEVIGVLEQSR---LLPAITFIFSRA 293
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV-REPA---------------IK 496
GCDAAV+ +C S + L R + V R A +
Sbjct: 294 GCDAAVK---------QCLRSSLRLTTNEERARIAEIVDRRTADLNGTDLVVLDFHQWRE 344
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART VL L K
Sbjct: 345 GLLRGIAAHHAGMLPTFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKYNG 404
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
+ LT E Q+ GRAGRRGID GH V++ P E L PL S F +
Sbjct: 405 EQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVLWNPDVDPAEVAGLASTRTFPLRSSFAPT 464
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
Y M +NL+ Q G + +A +L+E+SF Y
Sbjct: 465 YNMTINLVH-----------------QMGPA--QAHRLLERSFAQY 491
>gi|451944190|ref|YP_007464826.1| helicase [Corynebacterium halotolerans YIM 70093 = DSM 44683]
gi|451903577|gb|AGF72464.1| helicase [Corynebacterium halotolerans YIM 70093 = DSM 44683]
Length = 925
Score = 319 bits (818), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 202/562 (35%), Positives = 285/562 (50%), Gaps = 66/562 (11%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+++ + DF +D FQ A V+V APT +GKT++ E A ++ + FYT
Sbjct: 6 LEQFTADLDFPLDDFQLEGCRAVEGDHGVLVCAPTGAGKTIVGEFAVSLALSRGTKCFYT 65
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + + G++ VGLLTGD +IN A+I++MTTE+LRNM+Y +E
Sbjct: 66 TPIKALSNQKYHDLVDAHGEDAVGLLTGDVSINSSAEIVVMTTEVLRNMIY-------AE 118
Query: 269 SG-LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
SG L + +V+DE+HYL+D SRG VWEE+I+ + V II LSATV+N++E W+ +
Sbjct: 119 SGALRRLSHVVMDEIHYLADRSRGAVWEEVILNLDESVNIIGLSATVSNSEEFGNWLSTV 178
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDE-KGKHMNRKLSLNYLQLSTSEVKPYKDG 386
G T++I S RPVPL + PL + G +NR+L +L +E +
Sbjct: 179 RGDTKVIVSEHRPVPLEQWMMVGRKTYPLFEPGSGGEVNRELERRIERLQAAEAAEGRAD 238
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
R R A + + +H R P+VI L L +MLPAI
Sbjct: 239 YESGRGFRARAAGRRSGVKRPEDRH----------RPVGRPEVITALQGL---NMLPAIT 285
Query: 447 FIFNRRGCDAAV-QYLEDCNLLDECE---------------MSEVELALKRFRILYPDAV 490
FIF+R GCD A+ Q L +L E + E +L + RFR
Sbjct: 286 FIFSRAGCDGALMQCLRSRLVLTSQEEADEIGRIIDAGVEGIPEEDLEVLRFRQWR---- 341
Query: 491 REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
L +G AAHHAG LP ++ +EELF RGL++ VFATETLA GINMPART VL
Sbjct: 342 -----AALTRGFAAHHAGMLPAFRHIVEELFVRGLLRAVFATETLALGINMPARTVVLEK 396
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 610
L K + LT E Q+ GRAGRRGID G+ V+ P L PL+
Sbjct: 397 LVKFNGEAHVDLTPGEYTQLTGRAGRRGIDVIGNAVVQWAPAMDPRAVAGLASTRTYPLI 456
Query: 611 SQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLA 670
S F+ Y M +NLL EEA +L+E+SF Y ++
Sbjct: 457 STFSPGYNMAVNLLGLL-------------------GFEEALRLLEKSFAQYQADGSVVG 497
Query: 671 AKDELCKIQKETDVLTSEISDD 692
E+ + ++ L +++ D
Sbjct: 498 EVREIERAERRVQELRTQLEHD 519
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 107/245 (43%), Gaps = 34/245 (13%)
Query: 926 RTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFL 985
R ++AR+ +K+AR E ++ K+ +TV+ + + R R L ++ +E G
Sbjct: 695 REQLARVGEKLARRE--RDLAKLENTVERATDTLGRTFERLIDLLAEMDYVEFEG----- 747
Query: 986 RISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCAS 1045
+ R T V+ GE A I E++L +A L+ I +L PA+LA V +
Sbjct: 748 -----VGAER-----TPVVTEEGERLAQIHNESDLLVAQCLKRGIWNELDPAELAGVVSM 797
Query: 1046 LVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL---QEKHGVEIPCCLDSQF 1102
E K ++ EP + ++ + EL +++H + + ++ F
Sbjct: 798 CTFENRK-------ATHGEPDAATDRMAEAMNATARIWSELSADEQRHRLPVTREPEAGF 850
Query: 1103 SGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQIPK--LPDVDQRLQK 1155
+ V WA+G M A L GD R R+ IDLL Q+ K D +R +
Sbjct: 851 ALAVHQWAAGAPLGYCMAAAAESGAELTPGDFVRWCRQVIDLLEQVGKTGYEDGIRRSAR 910
Query: 1156 NAVDA 1160
A+DA
Sbjct: 911 QAIDA 915
>gi|184201024|ref|YP_001855231.1| putative helicase [Kocuria rhizophila DC2201]
gi|183581254|dbj|BAG29725.1| putative helicase [Kocuria rhizophila DC2201]
Length = 941
Score = 319 bits (817), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 192/502 (38%), Positives = 266/502 (52%), Gaps = 59/502 (11%)
Query: 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216
DF +D FQ A G V+V+APT +GKT++ E A + R+ FYTTP+KALSN
Sbjct: 30 DFELDPFQTQGCRALEEGRGVLVAAPTGAGKTVVGEFAIHLALQQGRKAFYTTPIKALSN 89
Query: 217 QKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276
QKF EF +G + VGLLTGD+++N EA +++MTTE+LRNMLY + L ++
Sbjct: 90 QKFHEFSRRWGSDRVGLLTGDTSVNSEADVVVMTTEVLRNMLY------GGSATLDNLGF 143
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
+V+DEVHYL+D RG VWEE+II+ P+ VQ++ LSATV+NA+E W+ + G T+++ S
Sbjct: 144 VVMDEVHYLADRFRGAVWEEVIIHLPEHVQLVSLSATVSNAEEFGAWLDDVRGSTDVVVS 203
Query: 337 SRRPVPLTWYFSTKTALLPLL-------DEKGKHMNRK-----LSLNYLQLSTSEVKPYK 384
RPVPL + L+ L + +H +R ++ L+L ++
Sbjct: 204 EHRPVPLWQHVQVGPQLMDLFVDDTTVEEAAQRHSDRHREEPAVNPELLRLFRTQHPRGG 263
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
G R R + Q ++S+ + +RR L + MLPA
Sbjct: 264 RAGGRGPGHRGRRRGGRQQEPRTARQDRISRPHL--LRR------------LDAEAMLPA 309
Query: 445 IWFIFNRRGCDAAVQYLEDCNLL----------------DECEMSEVELALKRFRILYPD 488
I FIF+R GCDAAV +L MS +LA + Y
Sbjct: 310 ITFIFSRAGCDAAVAQCVAADLWLTTPQEQRTIKAFAAEATAHMSTADLAALNYEDWY-- 367
Query: 489 AVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
GL++GV+AHHAG LP++K +E+LF GL+K VFATETLA GINMPAR+ VL
Sbjct: 368 -------HGLIRGVSAHHAGMLPVFKEVVEQLFSEGLIKAVFATETLALGINMPARSVVL 420
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
L K R+ +T E Q+ GRAGRRGID GH V++ + L P
Sbjct: 421 ERLDKFNGEARVDITPGEYTQLTGRAGRRGIDVEGHAVVLWRDGMNPQTVAGLASTRTYP 480
Query: 609 LVSQFTASYGMVLNLLA--GAK 628
L S F +Y M NL+A GAK
Sbjct: 481 LNSSFRPTYNMSTNLIARYGAK 502
Score = 48.5 bits (114), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV------SEGIKVRLWKNNSS 1061
GE + GE +L LA+ LR+ L L LA V +LV +G + RL
Sbjct: 776 GEQLRRLYGERDLLLALSLRDGFLDGLDAPGLAGVMTALVYQPRREDQGTRPRL------ 829
Query: 1062 IYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEA---WASGLTWREM 1118
P+ + + L E+ S + +H +P + G+VEA WA G T
Sbjct: 830 ---PTAAMDAAVQTLLENWSVLSAREAEH--RLPLTAVPEL-GLVEAMHRWARGATLTRT 883
Query: 1119 MMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
+ L GD R ++TID+L Q+ + +D L+ A +A + R
Sbjct: 884 LTGTDLAAGDFVRWAKQTIDVLDQLRGVHGLDPALRDTAHEAIEAVRR 931
>gi|453074949|ref|ZP_21977739.1| helicase [Rhodococcus triatomae BKS 15-14]
gi|452763898|gb|EME22173.1| helicase [Rhodococcus triatomae BKS 15-14]
Length = 896
Score = 319 bits (817), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 209/587 (35%), Positives = 294/587 (50%), Gaps = 68/587 (11%)
Query: 147 IDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIF 206
+++D + F +D FQ + A G V+V APT +GKT+I E A + + R+ F
Sbjct: 1 MELDLFTAQLSFPLDGFQAEACRALESGHGVLVCAPTGAGKTVIGEFAVHLALKSDRKCF 60
Query: 207 YTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVS 266
YTTP+KALSNQK+ + E +G +VGLLTGD +IN +A +++MTTE+LRNMLY +
Sbjct: 61 YTTPIKALSNQKYADLVERYGKADVGLLTGDVSINSDAPVVVMTTEVLRNMLY------A 114
Query: 267 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326
+ L + +V+DEVHYL+D RG VWEE+I++ P +V+++ LSATV+NA+E W+
Sbjct: 115 NSPALRGLSHVVMDEVHYLADRFRGAVWEEVILHLPDDVRLVSLSATVSNAEEFGAWMET 174
Query: 327 IHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
+ G TE++ RP+PL + L L D + + L + V+ K
Sbjct: 175 VRGDTEVVVDEVRPIPLWQHMMVGRRLFDLFDTTAQDAD---PAARLVIDRDLVRHLKQR 231
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
S R S G L + P+VI L +LPAI
Sbjct: 232 QSLDRYDSWQPRGRGRGSAPSSGTRPLPR-----------PEVIA---RLDEEGLLPAIT 277
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----------I 495
FIF+R GCDAAV C L ++ E A + RI+ P
Sbjct: 278 FIFSRAGCDAAVA---QC-LRSRLRLTTDEQADEIARIIDKHTGELPKHDLSVLGYWEWR 333
Query: 496 KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
+GL +G+A HHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 334 EGLERGIAGHHAGMLPAFRHTVEELFVKGLVRAVFATETLALGINMPARTVVLERLVKYN 393
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 615
+LT E Q+ GRAGRRGID GH V++ P A E L PL S F
Sbjct: 394 GETHAELTPGEYTQLTGRAGRRGIDVEGHAVVLWQPGVEATEVAGLASTRTFPLRSSFRP 453
Query: 616 SYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDEL 675
SY M +NL+ D M A EAR L+E+SF + ++ +
Sbjct: 454 SYNMSINLI------------DRMGA-------TEARALLERSFAQFQADRSVVGMVRSI 494
Query: 676 CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
K Q+ L E+ + ++ Y E A L+E ++ +R
Sbjct: 495 EKDQRALAELREELGGE-----------DSEYFEYAQLRERIRTRER 530
>gi|398788653|ref|ZP_10550789.1| ATP-dependent RNA helicase [Streptomyces auratus AGR0001]
gi|396991972|gb|EJJ03091.1| ATP-dependent RNA helicase [Streptomyces auratus AGR0001]
Length = 938
Score = 319 bits (817), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 211/553 (38%), Positives = 299/553 (54%), Gaps = 40/553 (7%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 31 MYDFGLDPFQVEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALEQGRKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+++ + +G VGLLTGD+++N EA +++MTTE+LRNMLY + L +
Sbjct: 91 SNQKYQDLVKRYGAGKVGLLTGDNSVNSEAPVVVMTTEVLRNMLY------AGSQSLVGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 145 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEK-GKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 393
S RPVPL + + L +E+ G+ R+ EV P + +R NS
Sbjct: 205 VSEHRPVPLWQHVLAGRRIYDLFEERDGQSGGRR-----------EVNPDLERLARMENS 253
Query: 394 RKHADMNSNNIVT-SFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R + T + + + I P+VID L + +LPAI FIF+R
Sbjct: 254 RPTFGRDKRRGRTMREADRERERRQRSRIWTPSRPEVID---RLDNEGLLPAITFIFSRA 310
Query: 453 GCDAAVQYLEDCNL-LDECEMSEV--ELALKRFRILYPDAVREPA----IKGLLKGVAAH 505
C+AAVQ L L++ E E + R + D + ++GL +G+AAH
Sbjct: 311 ACEAAVQQCLYSGLRLNDQEGREQVRRIVEARTAGIADDDLHVLGYFEWLEGLERGIAAH 370
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP +K +EELF +GLVK VFATETLA GINMPAR+ VL L K +T
Sbjct: 371 HAGMLPTFKEVVEELFVKGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITPG 430
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE--PLVSQFTASYGMVLNL 623
E Q+ GRAGRRGID GH V++ G + AG PL S F SY M +NL
Sbjct: 431 EYTQLTGRAGRRGIDIEGHAVVLWQ--RGMDPGAVAGLAGTRTYPLRSSFKPSYNMAVNL 488
Query: 624 LAGAKVMHLSNESDDMK--ALQAGRSLEEARKLV---EQSFGNYVGS-NVMLAAKDELCK 677
++ H S E +M QA +S+ + V E+ Y GS L +E +
Sbjct: 489 VSQFG-HHRSRELLEMSFAQFQADKSVVGISRQVQKNEEGLAGYRGSMTCHLGDFEEYSR 547
Query: 678 IQKETDVLTSEIS 690
+++E +E++
Sbjct: 548 LRRELKDRETELA 560
Score = 49.3 bits (116), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 20/197 (10%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL +++L +RIE + + F RI ++ E L+ ++ + G A + G
Sbjct: 720 ERYHRLLRDTRQLERRIEGRTNTIARTFDRICALLTELGYLEGDS--VTDEGRRLARLYG 777
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG------IKVRLWKNNSSIYEPSTTVI 1070
E +L + LR + L PA+LAA ++LV E + +L + E ++
Sbjct: 778 ELDLLASECLREGVWEGLGPAELAACASALVYEARQADDAVAPKLPAGQAR--EALGEMV 835
Query: 1071 NVINVLD----EHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD 1126
+ LD +HR + E G P D F+ WASG E++ D +
Sbjct: 836 RIWGRLDALEEDHR---INQAEGVGQREP---DLGFAWAAYRWASGFGLDEVLRDAEMPA 889
Query: 1127 GDLARLLRRTIDLLAQI 1143
GD R ++ ID+L QI
Sbjct: 890 GDFVRWCKQLIDVLGQI 906
>gi|383649789|ref|ZP_09960195.1| helicase [Streptomyces chartreusis NRRL 12338]
Length = 933
Score = 319 bits (817), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 203/522 (38%), Positives = 282/522 (54%), Gaps = 63/522 (12%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 31 MYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALQQGKKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +G + VGLLTGD+++N EA +++MTTE+LRNMLY + L +
Sbjct: 91 SNQKYADLCRRYGTDKVGLLTGDNSVNSEASVVVMTTEVLRNMLY------AGSQTLLGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 145 GHVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE-VKP-YKDGGSRRRN 392
S RPVPL + + L +E G+ + ++ + +++ E +P Y+D RRR
Sbjct: 205 VSEHRPVPLFQHVLAGRRMYDLFEE-GEGHKKAVNPDLTRMARMEATRPSYQD---RRRG 260
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+ AD + + + P+VI+ L + +LPAI FIF+R
Sbjct: 261 RLREADRER------------ERRQRSRVWTPSRPEVIE---RLDAEGLLPAITFIFSRA 305
Query: 453 GCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVREPA-----------IKGLLK 500
C+AAVQ L L++ E E AL R PA ++GL +
Sbjct: 306 ACEAAVQQCLYAGLRLNDEEAREQVRALVEERT-----ASIPAEDLHVLGYYEWLEGLER 360
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 361 GIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHA 420
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
+T E Q+ GRAGRRGID GH V++ E L PL S F SY M
Sbjct: 421 DITPGEFTQLTGRAGRRGIDVEGHAVVLWQRGMNPEHLAGLAGTRTYPLRSSFKPSYNMA 480
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
+NL+ Q GR +R+L+E SF +
Sbjct: 481 VNLVE-----------------QFGR--HRSRELLETSFAQF 503
Score = 47.0 bits (110), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 16/218 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL + +L +RIE + + F RI ++ E L + + G+ A + G
Sbjct: 715 ERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTEMDYLRGDE--VTEHGKRLARLYG 772
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT-------V 1069
E +L + LR + L PA+LA ++LV E R+ + + PS +
Sbjct: 773 ELDLLASECLREGVWEGLGPAELAGCVSALVYE---ARVGDDALAPKLPSGRAKAALGEM 829
Query: 1070 INVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 1128
+ + LD F + E G P D F+ WASG E++ + + GD
Sbjct: 830 VRIWGRLDALEEEFRISQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAGD 886
Query: 1129 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
R ++ ID+L QI + KNA A +++ R
Sbjct: 887 FVRWCKQVIDVLGQIAAAAPQGSSVVKNARKAVDLLLR 924
>gi|229817648|ref|ZP_04447930.1| hypothetical protein BIFANG_02919 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229785437|gb|EEP21551.1| hypothetical protein BIFANG_02919 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 858
Score = 319 bits (817), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 226/624 (36%), Positives = 327/624 (52%), Gaps = 79/624 (12%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + +A +G +V+V+APT +GKT+IA+ A + + FYTTP+KALSNQ
Sbjct: 43 FELDSFQSKANQALEQGDNVLVAAPTGAGKTVIADFAVFLAQQHNVKAFYTTPIKALSNQ 102
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + +G++ VGLLTGD +IN EA I++MTTE+LRNMLY+ + L + +
Sbjct: 103 KYHDLVNAYGEDKVGLLTGDISINSEADIVVMTTEVLRNMLYE------HSTTLDALRYV 156
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
+LDEVHYL+D RG VWEE+II+ P+ V+I+ LSATV+N ++ WI + G+T+LI S
Sbjct: 157 ILDEVHYLADRFRGPVWEEVIIHLPQRVRIVALSATVSNVEDFGHWISSVRGETKLIVSE 216
Query: 338 RRPVPLTWYF------STKTALLPLL--DEKGKH---MNRKLSLNYLQLSTSEVKPYKDG 386
+RPVPL + T+ ++ L D+ G +N +L+ QL + +
Sbjct: 217 KRPVPLEQHVMLQQNDRTEPEIIDLYRRDDSGAQTSVVNTELARRLSQLDHQASRRRGEE 276
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
S + R HA + G K + RR V+D L +L DMLP I+
Sbjct: 277 RSGKFKRRGHAGGDRGR-----GSSPSYKPERHTPRRW---AVVDELNYL---DMLPGIY 325
Query: 447 FIFNRRGCDAAVQYLEDCNLL----DEC--------EMSEVELALKRFRILYPDAVREPA 494
FIF+R GCD AV+ + L DE EM E +L+ + L R
Sbjct: 326 FIFSRNGCDQAVEQCINAGLELTSDDEAHRIRRIVDEMVEGQLSQDDLKTLGFSRFR--- 382
Query: 495 IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554
L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L K
Sbjct: 383 -FALEEGFASHHAGMVALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKLEKY 441
Query: 555 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEPLV 610
+G + LT E Q+ GRAGRRGID GH V+V P A K ++ PL
Sbjct: 442 DGTGHVPLTPGEFTQLTGRAGRRGIDTIGHAVVVDHRGFVPATAAALSSKRVY----PLH 497
Query: 611 SQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGR-----------SLEEARKLVEQSF 659
S F ++ M +NLL + D A SLE+A K EQ+F
Sbjct: 498 SSFHPTFNMAVNLLNSSDYATARTTLDHSFAQWEANASAWQLESQMASLEQALKGYEQAF 557
Query: 660 ----GNY-----VGSNVMLAAKDELCKIQKE---TDVLTSEISDDAIDRKS---RRLLSE 704
G++ + N+ A K+E +++ + TD SE + A+DRK R L +
Sbjct: 558 VCEHGDFKEFMTIRMNLSSAEKNERNRLKHQLFRTDADRSE-AFRALDRKIGKLRTLEQQ 616
Query: 705 AAYKEMANLQEELKAEKRFRTELR 728
K+ +LQ L+ R+ E+R
Sbjct: 617 HPCKQCPDLQRHLRWGHRWAREMR 640
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 982 KEFLRISNVIHETRALDINTQVIFPLGETAAAIR---GENELWLAMVLRNKILLDLKPAQ 1038
++F RI +V+ E L Q L E +R E ++ LA ++ + L PA
Sbjct: 658 RQFDRICDVLTELGYLSGQDQHDVILTEHGQLLRRLYSEQDVVLAQAIQAGVFDLLPPAG 717
Query: 1039 LAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQ---EKHGVEIP 1095
LAAV +SLV E R Y P + + E ++ E+ E HG+
Sbjct: 718 LAAVLSSLVYE---ARRGSGGEPRYYPGSMHGPIAVAARELKTIHAEVSDCCEAHGMNPL 774
Query: 1096 CCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI----PKLPDVDQ 1151
+D ++ WA G + E++ L GD R +R D+L QI P L
Sbjct: 775 PGIDFGILDIMYEWADGRSLSEVLRGTELTGGDFVRNAKRLSDMLQQIAVAEPYLGKDGA 834
Query: 1152 RLQKNAVDASNVMDRPPIS 1170
L A +A+ +++R ++
Sbjct: 835 SLASRAREAAELVNRGVVA 853
>gi|379715324|ref|YP_005303661.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 316]
gi|387140624|ref|YP_005696602.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
1/06-A]
gi|355392415|gb|AER69080.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
1/06-A]
gi|377654030|gb|AFB72379.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 316]
Length = 918
Score = 318 bits (816), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 214/594 (36%), Positives = 310/594 (52%), Gaps = 77/594 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E S F +D FQ +A V+V APT +GKT++ E A ++ + FYTTP
Sbjct: 13 EFISRQKFPLDDFQLQGCQAVEDDRGVLVCAPTGAGKTIVGEFAVSLALSRGTKCFYTTP 72
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQKF + E G VGLLTGD +IN +A +L+MTTE+LRNM+Y +
Sbjct: 73 IKALSNQKFHDLVEVHGAEAVGLLTGDVSINHDADVLVMTTEVLRNMIY------ARSEA 126
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DE+H+LSD SRG VWEE I+ + V+++ LSATV+N++E W+ + G
Sbjct: 127 LTRLTHVVMDEIHFLSDKSRGVVWEEAILGLDESVKVVGLSATVSNSEEFGRWLETVRGD 186
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV-----KPYK 384
TE+I S RPVPL + + PL + + G +N +L + ++ E +K
Sbjct: 187 TEVIVSEHRPVPLNQWMMVGRRIHPLFEPDSGGEVNVRLEEHIDRIEGKEAIDRGRDQFK 246
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
GG R R+S K S+ + R P+V+D L +S+DMLPA
Sbjct: 247 SGGFRARSSGKSHSSRP------------SRPQQDRYRPQGRPEVLDVL---QSQDMLPA 291
Query: 445 IWFIFNRRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPD--AVREPAIK----- 496
I FIF+R GC+ A+ Q + +L + + +E E+A RI+ + E +K
Sbjct: 292 ITFIFSRAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIVDAGVAGIPEEDLKVLDFR 346
Query: 497 ----GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L
Sbjct: 347 KWRAALMRGFAAHHAGMLPAFRHIVEELFTKGLVRAVFATETLALGINMPARTVVLEKLV 406
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
K + LT + Q+ GRAGRRGID G+ V+ P L PL+S
Sbjct: 407 KYNGEAHVDLTPGQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLIST 466
Query: 613 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV--GSNVMLA 670
F+ Y M +NLL K + ++ A +L+E+SF + GS V L
Sbjct: 467 FSPGYNMSVNLL---KTIGFTS----------------AHRLLEKSFAQFQADGSVVDLV 507
Query: 671 AKDEL--CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
K E +++ L+S IS++ I++ + E L+ EL E+R
Sbjct: 508 RKIERSETRVKDLESQLSSHISEENIEK----------FLEYITLRRELTDEER 551
Score = 46.6 bits (109), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV--IFPLGETAAAI 1014
EK+ R + + +L +E + K F RI ++ E ++ + + GE A I
Sbjct: 700 EKLARAQKETSQLRTTVETATDTLGKTFDRILGLLGELDYVEFIDAIPRVTEEGENLAKI 759
Query: 1015 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 1074
E++L +A L+ I DL PA+LA V + E K + ++ + + N +
Sbjct: 760 HNESDLLVAQCLKRGIWDDLDPAELAGVVSMCTFENRKETRGEPEAATESMALAMNNTLR 819
Query: 1075 VLDEHRSSFLELQEKHGVEIPCC--LDSQFSGMVEAWASGLTWREMMMDCA-----LDDG 1127
+ DE L + E+ ++P ++ FS + W +G + A L G
Sbjct: 820 LWDE-----LSVNERR-YQLPVTKYPEAGFSLAMHQWTAGAPLGYCLAAAAESGAELTAG 873
Query: 1128 DLARLLRRTIDLLAQI 1143
D R R+ IDLL QI
Sbjct: 874 DFVRQCRQVIDLLEQI 889
>gi|421734870|ref|ZP_16173919.1| helicase [Bifidobacterium bifidum LMG 13195]
gi|407077204|gb|EKE50061.1| helicase [Bifidobacterium bifidum LMG 13195]
Length = 852
Score = 318 bits (816), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 198/517 (38%), Positives = 279/517 (53%), Gaps = 95/517 (18%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D FQ+ +I+A RG +V+V+APT +GKT++A+ A + FYTTP+
Sbjct: 39 FAATLPFDLDDFQQDAIDALERGENVLVAAPTGAGKTVVADFAMYLARERNVKAFYTTPI 98
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + +G + VGLLTGD +IN EA I++MTTE+LRNMLY+ +++
Sbjct: 99 KALSNQKYHDLTAVYGADRVGLLTGDISINSEADIVVMTTEVLRNMLYEHSTTLNA---- 154
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ ++LDEVHYL+D RG VWEE+II+ P++V +I LSATV+N ++ + WI + G T
Sbjct: 155 --LRFVILDEVHYLADRFRGPVWEEVIIHLPRQVSVIGLSATVSNVEDFSSWISSVRGDT 212
Query: 332 ELITSSRRPVPLTWYF------STKTALLPLL--DEKGKH---MNRKL--SLNYLQLSTS 378
+L+ S RRPVPL + T+ LL L D +G+ +N +L L+ L +
Sbjct: 213 KLVVSERRPVPLEQHVLVQADDHTEPELLDLYRRDAQGEQTTKLNARLIDRLDQLDRQAA 272
Query: 379 EVKPYKDGGSR-RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLW 434
+ ++ SR R +SR HA + P+ V+D L
Sbjct: 273 RRRGAENSRSRGRGHSRGHAPAQRH-----------------------TPKRWAVVDELN 309
Query: 435 HLRSRDMLPAIWFIFNRRGCDAAVQYLEDC-----NLLDECEMSEVE------------- 476
+L DMLP I+FIF+R GCD AV E C L E EM +
Sbjct: 310 YL---DMLPGIYFIFSRNGCDQAV---EQCINAGLELTTEDEMRRIRAIVDEMVAGQLSQ 363
Query: 477 -----LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 531
L RFR L +G A+HHAG + +++ +E LF+ GLVK+VFA
Sbjct: 364 EDLKALQFSRFRF------------ALEEGFASHHAGMVALFRQIVERLFEEGLVKMVFA 411
Query: 532 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ-- 589
TETLA GINMPAR ++ L K SG + LT E Q+ GRAGRRGID GH ++V
Sbjct: 412 TETLALGINMPARCVIVEKLEKFNGSGHVPLTPGEFTQLTGRAGRRGIDTIGHAIVVDHR 471
Query: 590 --TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
P A K ++ PL S F A++ M +NLL
Sbjct: 472 DFVPATAAALSSKRVY----PLHSSFHATFNMAVNLL 504
Score = 48.1 bits (113), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 108/257 (42%), Gaps = 18/257 (7%)
Query: 921 NYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG 980
++E + LKK+ R ++ + +K+ I+ ++ +R+ R E S
Sbjct: 592 TFRELDQSIETLKKR-DREHPCRQCPDMQQHMKWGHRWIREMR-EYERVQHRYESRTGSV 649
Query: 981 WKEFLRISNVIHETRAL--DINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 1038
++F RI +++ + + D + G+ I E ++ LA L + L Q
Sbjct: 650 ARQFDRICSILEQLGYVKRDGTDMRLSEQGQLLRHIYSEQDIVLAEALERGMFDHLTARQ 709
Query: 1039 LAAVCASLVSE-----GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 1093
LAAV ++LV E G + R W I P V LD + L E G++
Sbjct: 710 LAAVLSALVFEARGGTGGEPRRWPGG--IQGP---VAQTSQSLDRLHAQLTMLCEDEGLD 764
Query: 1094 IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI----PKLPDV 1149
LD ++ WASG + ++ D + GD R +R D+L QI P LP
Sbjct: 765 DLQQLDFGIVDIMYDWASGNSLAYVLHDRDMTGGDFVRNAKRLSDILQQISAAEPYLPQG 824
Query: 1150 DQRLQKNAVDASNVMDR 1166
L + A +A +++R
Sbjct: 825 SAHLAQVAHEAMELVNR 841
>gi|386387443|ref|ZP_10072459.1| DSH domain-containing protein [Streptomyces tsukubaensis NRRL18488]
gi|385665093|gb|EIF88820.1| DSH domain-containing protein [Streptomyces tsukubaensis NRRL18488]
Length = 945
Score = 318 bits (816), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 207/581 (35%), Positives = 300/581 (51%), Gaps = 72/581 (12%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+Y+F +D FQ + A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 34 MYEFDLDPFQIDACRALEAGRGVLVAAPTGSGKTIVGEFAVHLALQQGRKCFYTTPIKAL 93
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + + +G + VGLLTGD+++N EA +++MTTE+LRNMLY + L +
Sbjct: 94 SNQKYADLVKRYGADKVGLLTGDNSVNSEAPVVVMTTEVLRNMLY------AGSQSLRGL 147
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P V ++ LSATV+NA+E W+ + G T +I
Sbjct: 148 GYVVMDEVHYLSDRFRGAVWEEVIIHLPDSVTLVSLSATVSNAEEFGDWLDTVRGDTAVI 207
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMN-----RKLSLNYLQLSTSE-VKPYKDGGS 388
S RPVPL + + L +E+ H R+++ + ++L+ +E + Y
Sbjct: 208 VSEERPVPLWQHVMAGRRMYDLFEEESDHGGRGTGRREVNPDLVRLARTENQRSYNPRDR 267
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
RR + AD + S + I P+VI+ L + +LPAI FI
Sbjct: 268 RRGKMVREADRER------------ERRSRSRIWTPGRPEVIE---RLDAEGLLPAITFI 312
Query: 449 FNRRGCDAAVQYLEDCNLL---DECEMSEVELALKRFRILYPDAVREPA----IKGLLKG 501
F+R GC+AAVQ L D + E+ +R + + + ++GL +G
Sbjct: 313 FSRAGCEAAVQQCLYAGLRLNDDTARLRVREIVEERTSAIPTEDLNVLGYYEWLEGLERG 372
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 373 IAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHAD 432
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
+T E Q+ GRAGRRGID GH V++ L PL S F SY M +
Sbjct: 433 ITPGEYTQLTGRAGRRGIDVEGHAVVLWQRAMDPAALAGLAGTRTYPLRSSFRPSYNMAV 492
Query: 622 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCK---- 677
NL+ Q GR +R+L+E SF + ++ ++ K
Sbjct: 493 NLVE-----------------QFGR--HRSRELLETSFAQFQADRSVVGISRQVQKNETG 533
Query: 678 IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELK 718
++ + +T + D ++E A L+ ELK
Sbjct: 534 LEGYREGMTCHLGD---------------FEEYARLRRELK 559
Score = 47.4 bits (111), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 14/213 (6%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL +++L +RIE + + F RI ++ E L + + P G A + G
Sbjct: 726 ERYHRLLRDTRQLERRIEGRTNTIARTFDRIVALLTELDYLRADE--VTPHGRRLARLYG 783
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIK----VRLWKNNSSIYEPSTTVINV 1072
E +L + LR+ + L PA+LAA ++LV E + V + ++ +
Sbjct: 784 ELDLLASECLRDGVWEGLTPAELAACVSALVYESRQSDDAVAPKVPGGAAKTALGQMVRI 843
Query: 1073 INVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLAR 1131
LD F + E G P D F+ WAS + E++ + + GD R
Sbjct: 844 WGKLDALEEDFKINQAEGVGQREP---DLGFAWAAYQWASDKSLDEVLRETEMPAGDFVR 900
Query: 1132 LLRRTIDLLAQI----PKLPDVDQRLQKNAVDA 1160
++ ID+L QI P+ + + AVDA
Sbjct: 901 WTKQVIDVLGQIAAAAPREGSTVAKNARKAVDA 933
>gi|401624563|gb|EJS42619.1| ski2p [Saccharomyces arboricola H-6]
Length = 1285
Score = 318 bits (816), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 189/531 (35%), Positives = 294/531 (55%), Gaps = 50/531 (9%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V L ++++ F +E+I A + F +D FQ+ ++ +G SV V+A TS+GK
Sbjct: 300 EWAHVVDLNHKIENF-DELIP--NPARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 356
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A N + YT+P+KALSNQKFR+F+ETFGD ++GL+TGD IN +A L
Sbjct: 357 TVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFGDVDIGLITGDVQINSDANCL 416
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V+
Sbjct: 417 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 470
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366
I LSATV N E A WIG+ K +I++ +RPVPL K L+P+++ + ++
Sbjct: 471 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINPNSEFLDA 530
Query: 367 KLSLNYLQLSTSEVKPYKDGGSRRRN---------------------------SRKHADM 399
+ L+ K GG + + +R A+
Sbjct: 531 NFRKHKEILNGDSTK----GGPSKSDSGRGGSSARGGRGGTNTRGGRGGRGNSARGGANR 586
Query: 400 NSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQ 459
+ + G ++ + + + P +I+ +LR +++LP + F+F+++ C+
Sbjct: 587 GGSRGAGAIGSNKRKFFTQDGPSKKTWPDIIN---YLRKKELLPMVVFVFSKKRCEEYAD 643
Query: 460 YLEDCNLLDECEMSEVEL----ALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWK 514
+LE N + E S++ + ++ R + D + I+ LL +G+A HH G LPI K
Sbjct: 644 WLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKIRSLLERGIAVHHGGLLPIVK 703
Query: 515 SFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRA 574
IE LF +G +KV+FATET A G+N+P RT + SS+ K +G +LT E QMAGRA
Sbjct: 704 ELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRA 763
Query: 575 GRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNLL 624
GRRG+D+ G V+++ + K + GV L SQF +Y M+LNLL
Sbjct: 764 GRRGLDSTGTVIVMAYNSPLSIGTFKEVTMGVPTRLQSQFRLTYNMILNLL 814
>gi|72162166|ref|YP_289823.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Thermobifida fusca YX]
gi|71915898|gb|AAZ55800.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Thermobifida fusca YX]
Length = 947
Score = 318 bits (816), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 214/621 (34%), Positives = 309/621 (49%), Gaps = 57/621 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
++E ++Y F D FQ + +A G V+V+APT SGKT++ E A + + R+ FYT
Sbjct: 22 IEEFQNLYGFDFDDFQIRACKALETGHGVLVAAPTGSGKTVVGEFAVHLALRDGRKCFYT 81
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + +G + VGLLTGD++IN EA +++MTTE+LRNMLY +S
Sbjct: 82 TPIKALSNQKYTDLVRRYGSDKVGLLTGDNSINGEAPVVVMTTEVLRNMLYAGSATLSG- 140
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +V+DEVHYL+D RG VWEE+II+ P+ VQI LSATV+NA+E W+ Q+
Sbjct: 141 -----LAYVVMDEVHYLADRFRGAVWEEVIIHLPESVQIAALSATVSNAEEFGQWLQQVR 195
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLL---------DEKGKHMNRKLSLNYLQLSTSE 379
G T +I +RPVPL + T + L E+ K+ + +
Sbjct: 196 GDTSVIVDEKRPVPLWQHMMVGTRIHDLFVEPEGTDTGQEEEKNGRGSRKRRRSRHARQR 255
Query: 380 VKPYKDGGSRR-------RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 432
+ GG R R + + A + Q + + R P
Sbjct: 256 TVEIEVGGERLHVNPKLIRFAEEDARLTQLAYQRRHPQARARGGAPRPRSRFAPPTRAQI 315
Query: 433 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDEC--EMSEVELALKRFRILYPDA- 489
+ L +LPAI FIF+R GCD AV+ L+ E +E+ +R P A
Sbjct: 316 VEQLDREGLLPAITFIFSRAGCDEAVRQCVASGLVLTTPEEAAEIREYAERQCAEIPPAD 375
Query: 490 ----VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
++ L G+AAHHAG LP +K +E LF RGL++ VFATETLA GINMPART
Sbjct: 376 LNVLGYSEWLQALECGIAAHHAGMLPTFKEVVEVLFSRGLIRAVFATETLALGINMPART 435
Query: 546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 605
V+ L K + LT E Q+ GRAGRRGID GH V+V P E L
Sbjct: 436 VVIEKLDKWNGETHVALTPGEYTQLTGRAGRRGIDVEGHAVVVWQPGTDPEMVAGLAGTR 495
Query: 606 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665
PL S F SY M +NL+A Q GR E R ++E SF +
Sbjct: 496 TYPLNSSFQPSYNMAVNLVA-----------------QVGR--ERGRAMLESSFAQFQAD 536
Query: 666 NVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRT 725
++ + K++ + + L + A D + + A + +++L+ A +R R
Sbjct: 537 RSVVGL---VRKLRAQQEALEG-YAKAAYDPRGDFMEYAAMRRRLSDLE---SAAQRNRR 589
Query: 726 ELRRRMELKRFSALK--DILK 744
RR+ + AL+ DI++
Sbjct: 590 TARRKEAERSLRALRTGDIIR 610
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 6/187 (3%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RLK ++ L +RIE + F R+ V+ E L+ +T + G + I
Sbjct: 735 ERYFRLKKETEELERRIESRSHVIARTFDRVCGVLQELDYLEGDT--VTEDGRLLSRIYS 792
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E +L A LR + L P +LAA ++LV E + + PS V +N +
Sbjct: 793 ELDLLAAESLRRGVWDALGPEELAACVSALVYESRR----PDEVFARVPSGPVEEALNAM 848
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 1136
+++ +H V D F WA G ++ + + GD R ++
Sbjct: 849 MRLWGELSDIEHRHRVSFLREPDLGFVWPTYRWARGDQLDHILNEAGMPAGDFVRSTKQL 908
Query: 1137 IDLLAQI 1143
IDLL QI
Sbjct: 909 IDLLGQI 915
>gi|384515623|ref|YP_005710715.1| ATP-dependent DNA helicase [Corynebacterium ulcerans 809]
gi|334696824|gb|AEG81621.1| ATP-dependent DNA helicase [Corynebacterium ulcerans 809]
Length = 918
Score = 318 bits (816), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 296/1031 (28%), Positives = 459/1031 (44%), Gaps = 192/1031 (18%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E S F +D FQ +A V+V APT +GKT++ E A ++ + FYTTP
Sbjct: 13 EFISRQKFPLDDFQIQGCQAIEDDRGVLVCAPTGAGKTIVGEFAVSLALSRGTKCFYTTP 72
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQKF + E G+ +GLLTGD +IN +A +L+MTTE+LRNM+Y +
Sbjct: 73 IKALSNQKFHDLVEVHGEEAIGLLTGDVSINHDADVLVMTTEVLRNMIY------ARSEA 126
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DE+H+LSD SRG VWEE I+ + V ++ LSATV+N++E W+ + G
Sbjct: 127 LTRLTHVVMDEIHFLSDKSRGAVWEEAILGLDESVSVVGLSATVSNSEEFGRWLETVRGD 186
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV-----KPYK 384
TE+I S RPVPL + + PL + + G +N +L + +L E +K
Sbjct: 187 TEVIVSEHRPVPLNQWMMVGRRIHPLFEPDSGGEVNARLEDHIDRLEGKEAIDRGRAQFK 246
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
GG R R+S S + + R P+V+D L +S+DMLPA
Sbjct: 247 AGGFRARSSGDSHSSRS------------GRPRQDRYRPLGRPEVLDVL---QSQDMLPA 291
Query: 445 IWFIFNRRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPD--AVREPAIK----- 496
I FIF+R GC+ A+ Q + +L + + +E E+A RI+ + E +K
Sbjct: 292 ITFIFSRAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIVDAGVAGIPEEDLKVLDFR 346
Query: 497 ----GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
L++G AAHHAG LP ++ +EELF +GLV VFATETLA GINMPART VL L
Sbjct: 347 KWRSALMRGFAAHHAGMLPAFRHIVEELFTKGLVHAVFATETLALGINMPARTVVLEKLV 406
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
K + LT + Q+ GRAGRRGID G+ V+ P L PL+S
Sbjct: 407 KYNGEAHVDLTPGQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLIST 466
Query: 613 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV--GSNVMLA 670
F+ Y M +NLL K + + A +L+E+SF + GS V +
Sbjct: 467 FSPGYNMSVNLL---KTIGFT----------------PAHRLLEKSFAQFQADGSVVDVV 507
Query: 671 AKDEL--CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELR 728
E +++K L++ I ++ I++ + E +L+ EL E+R
Sbjct: 508 RNIERSEARVKKLETQLSAHIPEEDIEK----------FVEYIDLRRELTDEER------ 551
Query: 729 RRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMA 788
KR S L+ ++ E V + ++ LG ++ K +A
Sbjct: 552 ---RAKRHS------------------LEQREIE-VSRVLASLNLGDVIAMPGKKRPLLA 589
Query: 789 SINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALA 848
+ + SN ++ D KP W T W V FP +
Sbjct: 590 VV--------VQPSN----NSSDPKP-----------WVTMESGWSGRVDTTAFPMPPVV 626
Query: 849 QGD--------ALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLS 900
G A PR+ ++ + +EKL T+S +
Sbjct: 627 VGHMKLSRATIAQPRKNSKYVVRQ----FEKL----------------TYSRPKRLKAQQ 666
Query: 901 SLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIK 960
++++ + + + R +AR+ +K+AR + KE ++ TV+ + +
Sbjct: 667 RHRPTEKITELRARIRSHPAHQWDNREDLARIGEKLARAQ--KETSRLRTTVETATDTLG 724
Query: 961 RLKARSKRLTKRIEQIEPSGWKEFL-RISNVIHETRALDINTQVIFPLGETAAAIRGENE 1019
+ R L ++ + EF+ I V E GE A I E++
Sbjct: 725 KTFDRILGLLGELDYV------EFIDGIPQVTEE--------------GENLAKIHNESD 764
Query: 1020 LWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 1079
L +A L+ I L PA+LA V + E K + ++ + + N + + DE
Sbjct: 765 LLVAQCLKRGIWDGLDPAELAGVISMCTFENRKETRGEPEAATEPMAVAMNNTLRLWDE- 823
Query: 1080 RSSFLELQEKHGVEIPCC--LDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARL 1132
L + E+ ++P ++ FS + W +G + A L GD R
Sbjct: 824 ----LSVNERR-YQLPVTKYPEAGFSLAIHQWTAGAPLGYCLAAAAESGAELTAGDFVRQ 878
Query: 1133 LRRTIDLLAQI 1143
R+ IDLL QI
Sbjct: 879 CRQVIDLLEQI 889
>gi|429200671|ref|ZP_19192347.1| DEAD/DEAH box helicase [Streptomyces ipomoeae 91-03]
gi|428663653|gb|EKX63000.1| DEAD/DEAH box helicase [Streptomyces ipomoeae 91-03]
Length = 949
Score = 318 bits (816), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 218/618 (35%), Positives = 315/618 (50%), Gaps = 85/618 (13%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 46 MYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALKQGKKCFYTTPIKAL 105
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 106 SNQKYADLCRRYGADKVGLLTGDNSVNSDAPVVVMTTEVLRNMLY------AGSQTLIGL 159
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 160 GHVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 219
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
S RPVPL + + L +E H K ++N + ++ + RR R
Sbjct: 220 VSEHRPVPLFQHVLAGRRMYDLFEEGEGH---KKAVNPDLTRMARMEASRPSFQDRRRGR 276
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
+ + + + I P+VI+ L S +LPAI FIF+R C
Sbjct: 277 AMREADRER----------ERRQRSRIWIPSRPEVIE---RLDSEGLLPAITFIFSRAAC 323
Query: 455 DAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----------IKGLLKGVA 503
+AAVQ C L +++ E LK ++ PA ++GL +G+A
Sbjct: 324 EAAVQ---QC-LYAGLRLNDDEARLKVRALVEERTATIPAEDLHVLGYYEWLEGLERGIA 379
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
AHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T
Sbjct: 380 AHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADIT 439
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E Q+ GRAGRRGID GH V++ + L PL S F SY M +NL
Sbjct: 440 PGEYTQLTGRAGRRGIDVEGHAVVLWQRGMNPDHLAGLAGTRTYPLRSSFKPSYNMAVNL 499
Query: 624 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY------VGSNVMLAAKDELCK 677
+ Q GR +R+L+E SF + VG + + +E +
Sbjct: 500 VE-----------------QFGR--HRSRELLETSFAQFQADKSVVGISRQVQRNEEGLE 540
Query: 678 IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFS 737
KE+ +T + D ++E A L+ ELK + TEL ++ +R +
Sbjct: 541 GYKES--MTCHLGD---------------FEEYARLRRELKDRE---TELAKQGAAQRRA 580
Query: 738 ALKDILKDFENG---HLP 752
L+ + G H+P
Sbjct: 581 EAAVALEKLKPGDVIHVP 598
Score = 47.4 bits (111), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 18/219 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 1015
E+ RLK + +L +RIE + + F RI ++ E LD + + G+ A +
Sbjct: 731 ERYHRLKRDTAQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEHGKRLARLY 787
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT------- 1068
GE +L + LR + L PA+LAA ++LV E R+ + + PS
Sbjct: 788 GELDLLASECLRAGVWEGLDPAELAACVSALVYE---ARVGDDAMAPKLPSGKAKAALGE 844
Query: 1069 VINVINVLDEHRSSFLELQ-EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 1127
++ + LD F Q E G P D F+ WASG E++ + + G
Sbjct: 845 MVRIWGRLDGLEEEFRITQSEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAG 901
Query: 1128 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
D R ++ ID+L Q+ + K+A A + + R
Sbjct: 902 DFVRWCKQVIDVLGQVSAAAPSGSTVAKSARKAVDGLLR 940
>gi|311064364|ref|YP_003971089.1| helicase [Bifidobacterium bifidum PRL2010]
gi|310866683|gb|ADP36052.1| HelY Helicase [Bifidobacterium bifidum PRL2010]
Length = 852
Score = 318 bits (816), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 198/517 (38%), Positives = 279/517 (53%), Gaps = 95/517 (18%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D FQ+ +I+A RG +V+V+APT +GKT++A+ A + FYTTP+
Sbjct: 39 FAATLPFDLDDFQQDAIDALERGENVLVAAPTGAGKTVVADFAMYLARERNVKAFYTTPI 98
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + +G + VGLLTGD +IN EA I++MTTE+LRNMLY+ +++
Sbjct: 99 KALSNQKYHDLTAVYGADRVGLLTGDISINSEADIVVMTTEVLRNMLYEHSTTLNA---- 154
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ ++LDEVHYL+D RG VWEE+II+ P++V +I LSATV+N ++ + WI + G T
Sbjct: 155 --LRFVILDEVHYLADRFRGPVWEEVIIHLPRQVSVIGLSATVSNVEDFSSWISSVRGDT 212
Query: 332 ELITSSRRPVPLTWYF------STKTALLPLL--DEKGKH---MNRKL--SLNYLQLSTS 378
+L+ S RRPVPL + T+ LL L D +G+ +N +L L+ L +
Sbjct: 213 KLVVSERRPVPLEQHVLVQADDHTEPELLDLYRRDAQGEQTTKLNARLIDRLDQLDRQAA 272
Query: 379 EVKPYKDGGSR-RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLW 434
+ ++ SR R +SR HA + P+ V+D L
Sbjct: 273 RRRGAENSRSRGRGHSRGHAPAQRH-----------------------TPKRWAVVDELN 309
Query: 435 HLRSRDMLPAIWFIFNRRGCDAAVQYLEDC-----NLLDECEMSEVE------------- 476
+L DMLP I+FIF+R GCD AV E C L E EM +
Sbjct: 310 YL---DMLPGIYFIFSRNGCDQAV---EQCINAGLELTTEDEMRRIRAIVDEMVAGQLSQ 363
Query: 477 -----LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 531
L RFR L +G A+HHAG + +++ +E LF+ GLVK+VFA
Sbjct: 364 EDLKALQFSRFRF------------ALEEGFASHHAGMVALFRQIVERLFEEGLVKMVFA 411
Query: 532 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ-- 589
TETLA GINMPAR ++ L K SG + LT E Q+ GRAGRRGID GH ++V
Sbjct: 412 TETLALGINMPARCVIVEKLEKFNGSGHVPLTPGEFTQLTGRAGRRGIDTIGHAIVVDHR 471
Query: 590 --TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
P A K ++ PL S F A++ M +NLL
Sbjct: 472 DFVPATAAALSSKRVY----PLHSSFHATFNMAVNLL 504
Score = 48.1 bits (113), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 108/257 (42%), Gaps = 18/257 (7%)
Query: 921 NYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG 980
++E + LKK+ R ++ + +K+ I+ ++ +R+ R E S
Sbjct: 592 TFRELDQSIETLKKR-DREHPCRQCPDMQQHMKWGHRWIREMR-EYERVQHRYESRTGSV 649
Query: 981 WKEFLRISNVIHETRAL--DINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQ 1038
++F RI +++ + + D + G+ I E ++ LA L + L Q
Sbjct: 650 ARQFDRICSILEQLGYVKRDGTDMRLSEQGQLLRHIYSEQDIVLAEALERGMFDHLTARQ 709
Query: 1039 LAAVCASLVSE-----GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 1093
LAAV ++LV E G + R W I P V LD + L E G++
Sbjct: 710 LAAVLSALVFEARGGTGGEPRRWPGG--IQGP---VAQTSQSLDRLHAQLTMLCEDEGLD 764
Query: 1094 IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI----PKLPDV 1149
LD ++ WASG + ++ D + GD R +R D+L QI P LP
Sbjct: 765 DLQQLDFGIVDIMYDWASGNSLAYVLHDRDMTGGDFVRNAKRLSDILQQISAAEPYLPQG 824
Query: 1150 DQRLQKNAVDASNVMDR 1166
L + A +A +++R
Sbjct: 825 SAHLAQVAHEAMELVNR 841
>gi|429730502|ref|ZP_19265149.1| DEAD/DEAH box helicase [Corynebacterium durum F0235]
gi|429147658|gb|EKX90682.1| DEAD/DEAH box helicase [Corynebacterium durum F0235]
Length = 930
Score = 318 bits (816), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 205/562 (36%), Positives = 292/562 (51%), Gaps = 65/562 (11%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E DF +D FQ +A V+V APT +GKT++ E A ++ + FYTTP
Sbjct: 13 EFCDRLDFPLDDFQIEGCQAVEADHGVLVCAPTGAGKTIVGEFAVSLALSRGTKCFYTTP 72
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+ + E GD+ VGLLTGD +IN A I++MTTE+LRNM+Y V S +
Sbjct: 73 IKALSNQKYHDLVEAHGDDAVGLLTGDVSINGSADIVVMTTEVLRNMIY-----VESPA- 126
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DE+H+L+D SRG VWEE+I+ + V II LSATV+N++E W+ + G
Sbjct: 127 LERLTHVVMDEIHFLADASRGPVWEEVILNLAESVNIIGLSATVSNSEEFGAWLTTVRGD 186
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKG-KHMNRKLSLNYLQLSTSEV--KPYKDGG 387
T +I S +RPVPL + LLPL +H+N+KL +L + + + Y
Sbjct: 187 TTVIVSEQRPVPLDQWMLVNRTLLPLFQPGSTEHVNKKLEAKVHKLESGSISTQSYDKNQ 246
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV--PQVIDTLWHLRSRDMLPAI 445
R SR N N G+ S S A R + P+VI L ++ MLPAI
Sbjct: 247 QARFRSRSR---NGNQP----GRSHRSGISRPADRFRPLGRPEVIQIL---QAHSMLPAI 296
Query: 446 WFIFNRRGCDAAV-QYLED-------------CNLLDE--CEMSEVELALKRFRILYPDA 489
FIF+R GCDAA+ Q L +++D ++ +L + RF+
Sbjct: 297 TFIFSRAGCDAALLQCLRSRLTLTTQDEANTIASIIDAGVADIPAADLEILRFKQWR--- 353
Query: 490 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL
Sbjct: 354 ------AALMRGFAAHHAGMLPAFRHIVEELFVKGLVRAVFATETLALGINMPARTVVLE 407
Query: 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
L K +LT + Q+ GRAGRRGID G+ V+ +P + L PL
Sbjct: 408 KLVKFNGESHAELTPGQYTQLTGRAGRRGIDTIGNAVVQWSPAMEPQAVAGLASTRTYPL 467
Query: 610 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVML 669
+S FT Y M +NLLA ++A +L+E+SF + ++
Sbjct: 468 ISTFTPGYNMSVNLLATI-------------------GYDQAHRLLEKSFAQFQADGSVV 508
Query: 670 AAKDELCKIQKETDVLTSEISD 691
E+ + ++ L +D
Sbjct: 509 DEVREMERAERRAAELEQRFTD 530
Score = 46.6 bits (109), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 20/222 (9%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI----NTQVIFPLGETAA 1012
EK+ R + +RL R+ + + F RI +++ E ++ N I G+ A
Sbjct: 710 EKLLRKQRDVERLRNRVSATTDTLGRTFDRIMDLLAEMDYVEFSDPDNIPHITEEGQRLA 769
Query: 1013 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 1072
I E++L +A LR I +L PA+LA V + E K + EP +
Sbjct: 770 LIHNESDLLVAQCLRRGIWDELDPAELAGVVSMCTFENRK-------ETRGEPDAATDAM 822
Query: 1073 INVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----L 1124
++ + EL + +H + + F+ + WA+G M A L
Sbjct: 823 ATAMNATNRIWRELVHDERRHNLPPTRVPEGGFALAIHQWAAGAPLGYCMAAAAESGAEL 882
Query: 1125 DDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
GD R R+ +D+L Q+ D +++NA DA + + R
Sbjct: 883 TPGDFVRWCRQVVDVLEQVRSTGYTDA-IRRNARDAIHAIRR 923
>gi|441149236|ref|ZP_20965180.1| ATP-dependent RNA helicase [Streptomyces rimosus subsp. rimosus
ATCC 10970]
gi|440619626|gb|ELQ82670.1| ATP-dependent RNA helicase [Streptomyces rimosus subsp. rimosus
ATCC 10970]
Length = 939
Score = 318 bits (815), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 200/522 (38%), Positives = 281/522 (53%), Gaps = 55/522 (10%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 31 MYDFALDPFQIDACKALEAGKGVLVAAPTGSGKTIVGEFAVHLALEQGRKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+++ G + VGLLTGD+++N EA +++MTTE+LRNMLY + L +
Sbjct: 91 SNQKYQDLVRRHGADRVGLLTGDNSVNSEAPVVVMTTEVLRNMLY------AGSRSLAGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 145 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGAWLDTVRGDTEVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDE-----KGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
S RPVPL + + L +E KGK R+++ + +L+ E G +
Sbjct: 205 VSEHRPVPLWQHVLAGRRMYDLFEEREGQGKGKAGRREVNPDLERLARLENSRPTFGRDK 264
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
RR N + + ++ I R++V +D +LPAI FIF
Sbjct: 265 RR--------GRNQREADRERERRQRSRIWTPGRAEVIDRLD------QEGLLPAITFIF 310
Query: 450 NRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGV 502
+R GC++AVQ L D+ + V ++ PD ++GL +G+
Sbjct: 311 SRAGCESAVQQCLYSGLRLNDQEGRARVRAIVEERTAGIPDEDLHVLGYYEWLEGLERGI 370
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
AAHHAG LP +K +EELF +GLVK VFATETLA GINMPAR+ VL L K +
Sbjct: 371 AAHHAGMLPTFKEVVEELFLKGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADI 430
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE--PLVSQFTASYGMV 620
T E Q+ GRAGRRGID GH V++ G + AG PL S F SY M
Sbjct: 431 TPGEYTQLTGRAGRRGIDVEGHAVVLWQ--RGMDPGALAGLAGTRTYPLRSSFKPSYNMA 488
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
+NL++ Q GR +R+L+E SF +
Sbjct: 489 VNLVS-----------------QFGR--HRSRELLEMSFAQF 511
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 117/258 (45%), Gaps = 21/258 (8%)
Query: 916 HDAVENYKEQRT------KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 969
H A E +++QR ++ARL+ +I R + D ++ E + RL +++L
Sbjct: 678 HIAPERHRKQRATAADDREIARLRTEI-RAHPCHGCDEREDHARWAE-RYHRLLRDTRQL 735
Query: 970 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 1029
+RIE + + F RI ++ E L+ +T + G A + GE +L + LR
Sbjct: 736 ERRIEGRTNTIARTFDRICGLLTELGYLEGDT--VTDEGRRLARLYGELDLLASECLRAG 793
Query: 1030 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEK 1089
+ L PA+LAA ++LV E R + + PS + ++ + L+E
Sbjct: 794 VWNGLGPAELAACASALVYES---RQADDAVAPKLPSGKARDALSEMVRIWGRLDALEED 850
Query: 1090 HGVEIPCCL-----DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP 1144
H + + D F+ WASG E++ + + GD R ++ ID+L Q+
Sbjct: 851 HKINQAEGVGQREPDLGFAWAAYRWASGFGLDEVLREAEMPAGDFVRWCKQLIDILGQLA 910
Query: 1145 KL--PDVDQRLQKNAVDA 1160
P+V + +K AVDA
Sbjct: 911 AAAPPEVARNARK-AVDA 927
>gi|407983934|ref|ZP_11164571.1| helicase conserved C-terminal domain protein [Mycobacterium
hassiacum DSM 44199]
gi|407374511|gb|EKF23490.1| helicase conserved C-terminal domain protein [Mycobacterium
hassiacum DSM 44199]
Length = 912
Score = 318 bits (815), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 204/525 (38%), Positives = 281/525 (53%), Gaps = 63/525 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
+ A+ F +D FQR + A G V+V APT +GKT++ E A +A R+ FYTTP
Sbjct: 11 DFAAQLSFPLDPFQREACTALENGHGVLVCAPTGAGKTVVGEFAVHLALAAGRKCFYTTP 70
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK + +G +GLLTGD +IN +A I++MTTE+LRNMLY ++
Sbjct: 71 IKALSNQKHSDLVRRYGPEKIGLLTGDQSINGDADIVVMTTEVLRNMLY------ANSPA 124
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DEVH+L+D RG VWEE+I++ P++V+++ LSATV+NA+E GWI + G
Sbjct: 125 LHGLSYVVMDEVHFLADRMRGAVWEEVILHLPEDVRLVSLSATVSNAEEFGGWIQAVRGD 184
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVKPYKDGGS 388
T ++ RPVPL + L L D + + ++KL ++ L
Sbjct: 185 TTVVVDEHRPVPLWQHVMVGKRLFDLFDYRAQDPRTHKKLKVHPDLL------------- 231
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
R R+ AD + ++ + + R P+VI T L + +LPAI FI
Sbjct: 232 RHIAFRREADR-----MAAWQPRVRGRGRPSIYRPPSRPEVIAT---LDNAGLLPAITFI 283
Query: 449 FNRRGCDAAVQYLEDCNL----LDECE-MSEV------ELALKRFRILYPDAVREPAIKG 497
F+R GCDAAV+ +L DE E ++E+ +L IL RE G
Sbjct: 284 FSRAGCDAAVKQCLRSSLRLTTADERERIAEIVDRRCADLPESDLLILDYHEWRE----G 339
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
LL+G+AAHHAG L ++ +EELF GLVK VFATETLA GINMPART VL L K
Sbjct: 340 LLRGLAAHHAGMLATFRHTVEELFVAGLVKAVFATETLALGINMPARTVVLERLVKFNGE 399
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
+ LT E Q+ GRAGRRGID GH V++ TP E L PL S F +Y
Sbjct: 400 QHLPLTPGEYTQLTGRAGRRGIDVEGHAVVLWTPEVDPIEIAGLASTRTFPLRSSFAPTY 459
Query: 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ Q G + +A KL+E SF Y
Sbjct: 460 NMTINLVH-----------------QMGPA--QAHKLLESSFAQY 485
>gi|403214546|emb|CCK69047.1| hypothetical protein KNAG_0B06170 [Kazachstania naganishii CBS
8797]
Length = 1283
Score = 318 bits (815), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 196/536 (36%), Positives = 289/536 (53%), Gaps = 56/536 (10%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V L +++ F NE+ V A + F +D FQ+ +I +G SV V+A TS+GK
Sbjct: 292 EWAHVVDLNHKITNF-NEL--VPNQARTWSFELDTFQKEAIFHLEQGDSVFVAAHTSAGK 348
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A N + YT+P+KALSNQKFR+F+ETF D +VGL+TGD IN EA L
Sbjct: 349 TVVAEYAIAMAKRNMTKTIYTSPIKALSNQKFRDFKETFEDIDVGLITGDVQINPEANCL 408
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V+
Sbjct: 409 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 462
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366
I LSATV N E A WIG+ K +I++ +RPVPL K ++P++ + +
Sbjct: 463 ILLSATVPNTYEFATWIGRTKQKNIYVISTPKRPVPLEVNIWAKGQMIPVISPAREFLET 522
Query: 367 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNN----------------------- 403
+ + LS + K + + NSR A N
Sbjct: 523 NFNKHKDLLSGT-----KADATPQNNSRGGAQAGRGNGKPGAGRGGARGGARGGARGGGR 577
Query: 404 ---------IVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
+ G ++ +A + P++++ +LRS+D+LP + F+F+++ C
Sbjct: 578 GGRGGNGSRGAGAIGSNRRQFFQRSAPSKKTWPELVN---YLRSKDLLPMVVFVFSKKRC 634
Query: 455 DAAVQYLEDCNLLDECEMSE----VELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGC 509
+ +LE N + E S+ +E ++ R R + + I+ LL +G+A HH G
Sbjct: 635 EEYADWLEGINFCNNKEKSQIYMFIEKSITRLRKEDRELPQILKIRSLLERGIAVHHGGL 694
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LPI K IE LF +G +KV+FATET A G+N+P RT V S + K +G LT E Q
Sbjct: 695 LPIVKELIEILFAKGFIKVLFATETFAMGLNLPTRTVVFSEIRKHDGNGLRDLTPGEFTQ 754
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE-PLVSQFTASYGMVLNLL 624
MAGRAGRRG+D G V+++ + K + GV L SQF +Y M+LNLL
Sbjct: 755 MAGRAGRRGLDKTGTVIVMAYSEPLQKGSFKEVSLGVPTKLQSQFRLTYNMILNLL 810
>gi|291440653|ref|ZP_06580043.1| helicase [Streptomyces ghanaensis ATCC 14672]
gi|291343548|gb|EFE70504.1| helicase [Streptomyces ghanaensis ATCC 14672]
Length = 937
Score = 318 bits (815), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 216/619 (34%), Positives = 317/619 (51%), Gaps = 86/619 (13%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + A G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 31 MYDFGLDPFQIEACRALEEGKGVLVAAPTGSGKTIVGEFAVHLALQQGKKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 91 SNQKYADLCRRYGTDQVGLLTGDNSVNSDAPVVVMTTEVLRNMLY------AGSQTLLGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 145 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK--PYKDGGSRRRN 392
S RPVPL + + L +E G+ + ++ + +++ E P+ G RRR
Sbjct: 205 VSEHRPVPLFQHVLAGRRIYDLFEE-GEGRKKAVNPDLTRMARLEASRPPW---GDRRRG 260
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
N + + ++ + R P+VI+ L + +LPAI FIF+R
Sbjct: 261 -------RGNMREADRERERRQRSRVWTPSR---PEVIE---RLDAEGLLPAITFIFSRA 307
Query: 453 GCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAVRE-PA-----------IK 496
C+AAVQ +C + + L A R R L + PA ++
Sbjct: 308 ACEAAVQ---------QCLYAGLRLNDEEARARVRALVEERTASIPAEDLHVLGYYEWLE 358
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 359 GLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNG 418
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
+T E Q+ GRAGRRGID GH V++ E L PL S F S
Sbjct: 419 EQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGMNPEHLAGLAGTRTYPLRSSFKPS 478
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELC 676
Y M +NL+ Q GR +R+L+E SF + ++ ++
Sbjct: 479 YNMAVNLVE-----------------QFGR--HRSRELLETSFAQFQADKSVVGISRQVQ 519
Query: 677 KIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRF 736
+ ++ + + ++ D + E A L+ ELK + TEL R+ +R
Sbjct: 520 RNEEGLEGYKASMTCHLGD-----------FDEYARLRRELKDRE---TELARQGAAQRR 565
Query: 737 SALKDILKDFENG---HLP 752
+ L+ + G H+P
Sbjct: 566 AESAVALERLKPGDVIHVP 584
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 24/242 (9%)
Query: 916 HDAVENYKEQRTK------VARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 969
H A E ++++R++ +ARL+K I R D ++ E + RL + +L
Sbjct: 672 HIAPERHRKKRSQAADDREIARLRKAI-RAHPCHGCDDREDHARWAE-RYHRLLRDTSQL 729
Query: 970 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 1029
+RIE + + F RI ++ E L + + G+ A + GE +L + LR
Sbjct: 730 ERRIEGRTNTIARTFDRIVALLTEMDYLRGDE--VTEHGKRLARLYGELDLLASECLREG 787
Query: 1030 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT-------VINVINVLDEHRSS 1082
+ L PA+LAA ++LV E R+ + + PS ++ + LD
Sbjct: 788 VWEGLAPAELAACVSALVYE---ARVSDDAMAPKLPSGRAKAALGEMVRIWGRLDALEED 844
Query: 1083 FLELQ-EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 1141
F Q E G P D F+ WASG E++ + + GD R ++ ID+L
Sbjct: 845 FRITQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAGDFVRWCKQVIDVLG 901
Query: 1142 QI 1143
QI
Sbjct: 902 QI 903
>gi|433648407|ref|YP_007293409.1| superfamily II RNA helicase [Mycobacterium smegmatis JS623]
gi|433298184|gb|AGB24004.1| superfamily II RNA helicase [Mycobacterium smegmatis JS623]
Length = 914
Score = 318 bits (815), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 203/525 (38%), Positives = 277/525 (52%), Gaps = 64/525 (12%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D FQ+ + +A G V+V APT +GKT++ E A +A R+ FYTTP+
Sbjct: 12 FAAQLSFALDDFQQRACQALESGHGVLVCAPTGAGKTVVGEFAVHLALAAGRKCFYTTPI 71
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK + +G +GLLTGD +IN +A +++MTTE+LRNMLY ++ L
Sbjct: 72 KALSNQKHNDLVARYGPERIGLLTGDQSINGDADVVVMTTEVLRNMLY------ANSPAL 125
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ + +V+DEVH+L+D RG VWEE+I++ P EV+++ LSATV+NA+E GWI + G T
Sbjct: 126 YGLSHVVMDEVHFLADRMRGAVWEEVILHLPDEVRLVSLSATVSNAEEFGGWIQTVRGDT 185
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLD---EKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ RPVPL + L L D K R+L ++ L
Sbjct: 186 TVVVDEHRPVPLWQHVMVGKRLFDLFDYRASKAAKSGRELLVDPELL------------- 232
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
R +R+ AD ++ G+ + S R P VI T L +LPAI F+
Sbjct: 233 RHIANRREADRLADWQPRGRGRGRPS-----IYRPPGRPDVIST---LDREGLLPAITFV 284
Query: 449 FNRRGCDAAVQYLEDCNLL---DECEMSEVELALKR--------FRILYPDAVREPAIKG 497
F+R GCDAAV+ +L DE + E+ +R +L RE G
Sbjct: 285 FSRVGCDAAVKQCLRSSLRLTSDEERVRIAEIIDRRTSELNEADLVVLDYHEWRE----G 340
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
LL+G+AAHHAG LPI++ +EELF GLVK VFATETLA GINMPART +L L K
Sbjct: 341 LLRGLAAHHAGMLPIFRHTVEELFTAGLVKAVFATETLALGINMPARTVLLERLVKFNGE 400
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
+ LT E Q+ GRAGRRGID GH V++ P E L PL S F +Y
Sbjct: 401 QHMPLTPGEYTQLTGRAGRRGIDIEGHAVVLWHPDIDPAEVAGLASTRTFPLRSSFAPTY 460
Query: 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ + M Q A KL+E SF Y
Sbjct: 461 NMTINLV------------NQMGPTQ-------AHKLLESSFAQY 486
>gi|294811682|ref|ZP_06770325.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
gi|326440134|ref|ZP_08214868.1| putative ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC
27064]
gi|294324281|gb|EFG05924.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
Length = 942
Score = 318 bits (815), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 210/577 (36%), Positives = 296/577 (51%), Gaps = 64/577 (11%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+Y F +D FQ + A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 31 LYAFDLDTFQIEACRALEAGQGVLVAAPTGSGKTIVGEFAVHLALTQGRKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + + +G VGLLTGD+++N EA +++MTTE+LRNMLY + S L +
Sbjct: 91 SNQKYTDLVKRYGAEKVGLLTGDNSVNAEAPVVVMTTEVLRNMLY------AGSSSLLGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G T +I
Sbjct: 145 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTAVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
S RPVPL + + L +E+ H R EV P +R N R
Sbjct: 205 VSEDRPVPLWQHVLAGRRMYDLFEEETDHGGRG-------TGRREVNPDLVRLARMENQR 257
Query: 395 KH--ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+ D +V + + S I P+VI+ L + +LPAI FIF+R
Sbjct: 258 TYNPRDRRRGKMVREA-DRERERRSRGRIWTPGRPEVIE---RLDAEGLLPAITFIFSRA 313
Query: 453 GCDAAVQ--YLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPA----IKGLLKGVAAH 505
GC+AAVQ L D+ + V E+ +R + + + ++GL +G+AAH
Sbjct: 314 GCEAAVQQCLYAGLRLNDDAARARVREIVEERTAAIPGEDLHVLGYYEWLEGLERGIAAH 373
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T
Sbjct: 374 HAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITPG 433
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E Q+ GRAGRRGID GH V++ L PL S F SY M +NL+
Sbjct: 434 EYTQLTGRAGRRGIDIEGHAVVLWQRAMDPAALAGLAGTRTYPLRSSFKPSYNMAVNLVQ 493
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCK----IQKE 681
Q GR +R+L+E SF + ++ ++ K ++
Sbjct: 494 -----------------QFGR--HRSRELLETSFAQFQADRSVVGISRQVQKNEAGLEGY 534
Query: 682 TDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELK 718
+ +T + D ++E A L+ ELK
Sbjct: 535 REGMTCHLGD---------------FEEYARLRRELK 556
Score = 47.0 bits (110), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 119/265 (44%), Gaps = 32/265 (12%)
Query: 916 HDAVENYKEQRT------KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 969
H E +++QR+ ++ARL+ ++ R + D ++ E + RL+ +++L
Sbjct: 678 HIVPERHRKQRSAAADDREIARLRAEL-RAHPCHGCDEREDHARWAE-RHHRLQRDTRQL 735
Query: 970 TKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRN 1028
+RIE + + F RI ++ E LD + + G+ A + GE +L + LR+
Sbjct: 736 ERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEDGKRLARLYGELDLLASECLRD 792
Query: 1029 KILLDLKPAQLAAVCASLVSEG--------IKVRLWKNNSSIYEPSTTVINVINVLDEHR 1080
++ L PA+LAA ++LV E KV + +++ E ++ + LD
Sbjct: 793 RVWEGLSPAELAACVSALVYEARQADDAVPPKVPGGRVKAALGE----MVRIWGRLDALE 848
Query: 1081 SSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 1139
F + E G P D F+ V WA + E++ + + GD R ++ ID+
Sbjct: 849 EDFKINQTEGVGQREP---DLGFAWAVYQWAEDKSLDEVLREAEMPAGDFVRWTKQVIDV 905
Query: 1140 LAQIPKLPDVDQ----RLQKNAVDA 1160
L QI + R + AVDA
Sbjct: 906 LGQIAAAAPAENITVARNARRAVDA 930
>gi|383314211|ref|YP_005375066.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
P54B96]
gi|384506722|ref|YP_005683391.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
C231]
gi|384508809|ref|YP_005685477.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis I19]
gi|385807503|ref|YP_005843900.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 267]
gi|387136558|ref|YP_005692538.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
42/02-A]
gi|302206162|gb|ADL10504.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
C231]
gi|308276402|gb|ADO26301.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis I19]
gi|348607003|gb|AEP70276.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
42/02-A]
gi|380869712|gb|AFF22186.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
P54B96]
gi|383804896|gb|AFH51975.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 267]
Length = 918
Score = 318 bits (815), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 213/594 (35%), Positives = 310/594 (52%), Gaps = 77/594 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E S F +D FQ +A V+V APT +GKT++ E A ++ + FYTTP
Sbjct: 13 EFISRQKFPLDDFQLQGCQAVEDDRGVLVCAPTGAGKTIVGEFAVSLALSRGTKCFYTTP 72
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQKF + E G VGLLTGD +IN +A +L+MT+E+LRNM+Y +
Sbjct: 73 IKALSNQKFHDLVEVHGAEAVGLLTGDVSINHDADVLVMTSEVLRNMIY------ARSEA 126
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DE+H+LSD SRG VWEE I+ + V+++ LSATV+N++E W+ + G
Sbjct: 127 LTRLTHVVMDEIHFLSDKSRGAVWEEAILGLDESVKVVGLSATVSNSEEFGRWLETVRGD 186
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV-----KPYK 384
TE+I S RPVPL + + PL + + G +N +L + ++ E +K
Sbjct: 187 TEVIVSEHRPVPLNQWMMVGRRIHPLFEPDSGGEVNVRLEEHIDRIEGKEAIDRGRDQFK 246
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
GG R R+S K N + + R P+V+D L +S+DMLPA
Sbjct: 247 SGGFRARSSGKSHSSRPN------------RPQQDRYRPQGRPEVLDVL---QSQDMLPA 291
Query: 445 IWFIFNRRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPD--AVREPAIK----- 496
I FIF+R GC+ A+ Q + +L + + +E E+A RI+ + E +K
Sbjct: 292 ITFIFSRAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIVDAGVAGIPEEDLKVLDFR 346
Query: 497 ----GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L
Sbjct: 347 KWRAALMRGFAAHHAGMLPAFRHIVEELFTKGLVRAVFATETLALGINMPARTVVLEKLV 406
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
K + LT + Q+ GRAGRRGID G+ V+ P L PL+S
Sbjct: 407 KYNGEAHVDLTPGQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLIST 466
Query: 613 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV--GSNVMLA 670
F+ Y M +NLL K + ++ A +L+E+SF + GS V L
Sbjct: 467 FSPGYNMSVNLL---KTIGFTS----------------AHRLLEKSFAQFQADGSVVDLV 507
Query: 671 AKDEL--CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
K E +++ L+S IS++ I++ + E L+ EL E+R
Sbjct: 508 RKIERSETRVKDLESQLSSHISEENIEK----------FLEYITLRRELTDEER 551
Score = 46.6 bits (109), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV--IFPLGETAAAI 1014
EK+ R + + +L +E + K F RI ++ E ++ + + GE A I
Sbjct: 700 EKLARAQKETSQLRTTVETATDTLGKTFDRILGLLGELDYVEFIDAIPRVTEEGENLAKI 759
Query: 1015 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 1074
E++L +A L+ I DL PA+LA V + E K + ++ + + N +
Sbjct: 760 HNESDLLVAQCLKRGIWDDLDPAELAGVVSMCTFENRKETRGEPEAATESMALAMNNTLR 819
Query: 1075 VLDEHRSSFLELQEKHGVEIPCC--LDSQFSGMVEAWASGLTWREMMMDCA-----LDDG 1127
+ DE L + E+ ++P ++ FS + W +G + A L G
Sbjct: 820 LWDE-----LSVNERR-YQLPVTKYPEAGFSLAMHQWTAGAPLGYCLAAAAESGAELTAG 873
Query: 1128 DLARLLRRTIDLLAQI 1143
D R R+ IDLL QI
Sbjct: 874 DFVRQCRQVIDLLEQI 889
>gi|300858449|ref|YP_003783432.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
FRC41]
gi|375288623|ref|YP_005123164.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
3/99-5]
gi|384504630|ref|YP_005681300.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
1002]
gi|300685903|gb|ADK28825.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
FRC41]
gi|302330719|gb|ADL20913.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
1002]
gi|371575912|gb|AEX39515.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
3/99-5]
Length = 918
Score = 318 bits (815), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 213/594 (35%), Positives = 310/594 (52%), Gaps = 77/594 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E S F +D FQ +A V+V APT +GKT++ E A ++ + FYTTP
Sbjct: 13 EFISRQKFPLDDFQLQGCQAVEDDRGVLVCAPTGAGKTIVGEFAVSLALSRGTKCFYTTP 72
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQKF + E G VGLLTGD +IN +A +L+MT+E+LRNM+Y +
Sbjct: 73 IKALSNQKFHDLVEVHGAEAVGLLTGDVSINHDADVLVMTSEVLRNMIY------ARSEA 126
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DE+H+LSD SRG VWEE I+ + V+++ LSATV+N++E W+ + G
Sbjct: 127 LTRLTHVVMDEIHFLSDKSRGAVWEEAILGLDESVKVVGLSATVSNSEEFGRWLETVRGD 186
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV-----KPYK 384
TE+I S RPVPL + + PL + + G +N +L + ++ E +K
Sbjct: 187 TEVIVSEHRPVPLNQWMMVGRRIHPLFEPDSGGEVNVRLEEHIDRIEGKEAIDRGRDQFK 246
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
GG R R+S K N + + R P+V+D L +S+DMLPA
Sbjct: 247 SGGFRARSSGKSHSSRPN------------RPQQDRYRPQGRPEVLDVL---QSQDMLPA 291
Query: 445 IWFIFNRRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPD--AVREPAIK----- 496
I FIF+R GC+ A+ Q + +L + + +E E+A RI+ + E +K
Sbjct: 292 ITFIFSRAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIVDAGVAGIPEEDLKVLDFR 346
Query: 497 ----GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L
Sbjct: 347 KWRAALMRGFAAHHAGMLPAFRHIVEELFTKGLVRAVFATETLALGINMPARTVVLEKLV 406
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
K + LT + Q+ GRAGRRGID G+ V+ P L PL+S
Sbjct: 407 KYNGEAHVDLTPGQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLIST 466
Query: 613 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV--GSNVMLA 670
F+ Y M +NLL K + ++ A +L+E+SF + GS V L
Sbjct: 467 FSPGYNMSVNLL---KTIGFTS----------------AHRLLEKSFAQFQADGSVVDLV 507
Query: 671 AKDEL--CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
K E +++ L+S IS++ I++ + E L+ EL E+R
Sbjct: 508 RKIERSETRVKDLESQLSSHISEENIEK----------FLEYITLRRELTDEER 551
Score = 46.6 bits (109), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV--IFPLGETAAAI 1014
EK+ R + + +L +E + K F RI ++ E ++ + + GE A I
Sbjct: 700 EKLARAQKETSQLRTTVETATDTLGKTFDRILGLLGELDYVEFIDAIPRVTEEGENLAKI 759
Query: 1015 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 1074
E++L +A L+ I DL PA+LA V + E K + ++ + + N +
Sbjct: 760 HNESDLLVAQCLKRGIWDDLDPAELAGVVSMCTFENRKETRGEPEAATESMALAMNNTLR 819
Query: 1075 VLDEHRSSFLELQEKHGVEIPCC--LDSQFSGMVEAWASGLTWREMMMDCA-----LDDG 1127
+ DE L + E+ ++P ++ FS + W +G + A L G
Sbjct: 820 LWDE-----LSVNERR-YQLPVTKYPEAGFSLAMHQWTAGAPLGYCLAAAAESGAELTAG 873
Query: 1128 DLARLLRRTIDLLAQI 1143
D R R+ IDLL QI
Sbjct: 874 DFVRQCRQVIDLLEQI 889
>gi|326382289|ref|ZP_08203981.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
neofelifaecis NRRL B-59395]
gi|326199019|gb|EGD56201.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
neofelifaecis NRRL B-59395]
Length = 913
Score = 318 bits (814), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 215/606 (35%), Positives = 312/606 (51%), Gaps = 75/606 (12%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + A G V+V APT +GKT++ E A +A+ + FYTTP+KALSNQ
Sbjct: 22 FSLDPFQHRACLALESGQGVLVCAPTGAGKTIVGEFAVHLALAHGTKCFYTTPIKALSNQ 81
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
KF + + G NVGLLTGD++IN A +++MTTE+LRNMLY + S L + +
Sbjct: 82 KFHDLVDVHGAENVGLLTGDNSINSGAPVVVMTTEVLRNMLY------ADSSALRGLSHV 135
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVH+L+D RG VWEE+I+ V+++ LSATV+NA+E WI + G T +I
Sbjct: 136 VMDEVHFLADRFRGAVWEEVILGLDPAVRVVSLSATVSNAEEFGDWITTVRGDTAVIVDE 195
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RPVPL + + L D K +V P + + R
Sbjct: 196 HRPVPLHQHMLVANRMFGLFDRK---------------HPGQVNPELNRYIKHR------ 234
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAA 457
+ S++ V + + + S+ P++I L +LPAI FIF+R+GCD A
Sbjct: 235 -LLSDDAVGGYRERLARERRRGGTGISR-PRLIRL---LEENGLLPAITFIFSRKGCDGA 289
Query: 458 V-QYLE-DCNLLDECEMSEVELALKRF---------RILYPDAVREPAIKGLLKGVAAHH 506
+ Q L D NLL+ ++ V+ + R +L D RE GL +G AAHH
Sbjct: 290 LAQCLRSDLNLLEPHQVQAVDAIVDRHLEALAPGDADVLGVDEWRE----GLRRGFAAHH 345
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
AG LP ++ +EELF GLV+VVFATETLA GINMPAR+ VL L K + LT E
Sbjct: 346 AGLLPTFRQAVEELFVEGLVQVVFATETLALGINMPARSVVLERLVKYNGEAHVDLTPGE 405
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
Q+ GRAGRRGID GH V+V TP + L A PL S F Y M +NL+
Sbjct: 406 YTQLTGRAGRRGIDVEGHAVVVWTPEVVPDRLAGLAGARTFPLRSSFAPEYNMAMNLI-- 463
Query: 627 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLT 686
D + +E +R L+ +SF + ++ +L + + LT
Sbjct: 464 ----------DRL-------GVEGSRDLLRRSFAQFQTDRSVVGQARQLDRAR-----LT 501
Query: 687 SEISDDAIDRKS-RRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKD 745
D ++ + R L+ A+ E +L+E+++ ++R + RRME A+ + L
Sbjct: 502 LRKVDGELEHSTERHGLAPEAFLEYVSLREDIRRQERA-AKFVRRMEAS--DAVSEDLLA 558
Query: 746 FENGHL 751
+ GH+
Sbjct: 559 LKPGHV 564
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 28/208 (13%)
Query: 957 EKIKRLKARSKRLTKRIEQIE-------PSGWKEFLRISNVIHETRAL---DINTQVIFP 1006
+ + RL R RL + I+ +E + EF I+ V+ E L D + P
Sbjct: 682 DDLHRLAERRHRLLRDIDGLERAVDERTAALETEFDAITGVLTELSYLETDDAGELAVTP 741
Query: 1007 LGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIK------VRLWKNNS 1060
G I E++L +A +R I L P LAAV +++V E + + N
Sbjct: 742 TGAVLRRIYSESDLLVAECIRAGIWDRLSPPDLAAVVSAMVYESRRDSYTGGIDSMPGNK 801
Query: 1061 SIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM 1120
++ + + V + + E+QE+HGV D+ F + AWASG + RE ++
Sbjct: 802 ALRDALVATVEVWHATN-------EVQERHGVVQTREPDTGFCVAIGAWASGRSLREALL 854
Query: 1121 DCA-----LDDGDLARLLRRTIDLLAQI 1143
+ L GD R R+ IDLL Q+
Sbjct: 855 AASERGQMLSPGDFVRWNRQVIDLLEQV 882
>gi|384510902|ref|YP_005690480.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
PAT10]
gi|341824841|gb|AEK92362.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
PAT10]
Length = 918
Score = 318 bits (814), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 213/594 (35%), Positives = 310/594 (52%), Gaps = 77/594 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E S F +D FQ +A V+V APT +GKT++ E A ++ + FYTTP
Sbjct: 13 EFISRQKFPLDDFQLQGCQAVEDDRGVLVCAPTGAGKTIVGEFAVSLALSRGTKCFYTTP 72
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQKF + E G VGLLTGD +IN +A +L+MT+E+LRNM+Y +
Sbjct: 73 IKALSNQKFHDLVEVHGAEAVGLLTGDVSINHDADVLVMTSEVLRNMIY------ARSEA 126
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DE+H+LSD SRG VWEE I+ + V+++ LSATV+N++E W+ + G
Sbjct: 127 LTRLTHVVMDEIHFLSDKSRGAVWEEAILGLDESVKVVGLSATVSNSEEFGRWLETVRGD 186
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV-----KPYK 384
TE+I S RPVPL + + PL + + G +N +L + ++ E +K
Sbjct: 187 TEVIVSEHRPVPLNQWMMVGRRIHPLFEPDSGGEVNVRLEEHIDRIEGKEAIDRGRDQFK 246
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
GG R R+S K N + + R P+V+D L +S+DMLPA
Sbjct: 247 SGGFRARSSGKSHSSRPN------------RPQQDRYRPQGRPEVLDVL---QSQDMLPA 291
Query: 445 IWFIFNRRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPD--AVREPAIK----- 496
I FIF+R GC+ A+ Q + +L + + +E E+A RI+ + E +K
Sbjct: 292 ITFIFSRAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIVDAGVAGIPEEDLKVLDFR 346
Query: 497 ----GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L
Sbjct: 347 KWRAALMRGFAAHHAGMLPAFRHIVEELFTKGLVRAVFATETLALGINMPARTVVLEKLV 406
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
K + LT + Q+ GRAGRRGID G+ V+ P L PL+S
Sbjct: 407 KYNGEAHVDLTPGQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLIST 466
Query: 613 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV--GSNVMLA 670
F+ Y M +NLL K + ++ A +L+E+SF + GS V L
Sbjct: 467 FSPGYNMSVNLL---KTIGFTS----------------AHRLLEKSFAQFQADGSVVDLV 507
Query: 671 AKDEL--CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
K E +++ L+S IS++ I++ + E L+ EL E+R
Sbjct: 508 RKIERSETRVKDLESQLSSHISEENIEK----------FLEYITLRRELTDEER 551
Score = 46.6 bits (109), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV--IFPLGETAAAI 1014
EK+ R + + +L +E + K F RI ++ E ++ + + GE A I
Sbjct: 700 EKLARAQKETSQLRTTVETATDTLGKTFDRILGLLGELDYVEFIDAIPRVTEEGENLAKI 759
Query: 1015 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 1074
E++L +A L+ I DL PA+LA V + E K + ++ + + N +
Sbjct: 760 HNESDLLVAQCLKRGIWDDLDPAELAGVVSMCTFENRKETRGEPEAATESMALAMNNTLR 819
Query: 1075 VLDEHRSSFLELQEKHGVEIPCC--LDSQFSGMVEAWASGLTWREMMMDCA-----LDDG 1127
+ DE L + E+ ++P ++ FS + W +G + A L G
Sbjct: 820 LWDE-----LSVNERR-YQLPVTKYPEAGFSLAMHQWTAGAPLGYCLAAAAESGAELTAG 873
Query: 1128 DLARLLRRTIDLLAQI 1143
D R R+ IDLL QI
Sbjct: 874 DFVRQCRQVIDLLEQI 889
>gi|254392841|ref|ZP_05008011.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
gi|197706498|gb|EDY52310.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
Length = 932
Score = 318 bits (814), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 210/577 (36%), Positives = 296/577 (51%), Gaps = 64/577 (11%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+Y F +D FQ + A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 42 LYAFDLDTFQIEACRALEAGQGVLVAAPTGSGKTIVGEFAVHLALTQGRKCFYTTPIKAL 101
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + + +G VGLLTGD+++N EA +++MTTE+LRNMLY + S L +
Sbjct: 102 SNQKYTDLVKRYGAEKVGLLTGDNSVNAEAPVVVMTTEVLRNMLY------AGSSSLLGL 155
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G T +I
Sbjct: 156 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTAVI 215
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
S RPVPL + + L +E+ H R EV P +R N R
Sbjct: 216 VSEDRPVPLWQHVLAGRRMYDLFEEETDHGGRG-------TGRREVNPDLVRLARMENQR 268
Query: 395 KH--ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+ D +V + + S I P+VI+ L + +LPAI FIF+R
Sbjct: 269 TYNPRDRRRGKMVREA-DRERERRSRGRIWTPGRPEVIE---RLDAEGLLPAITFIFSRA 324
Query: 453 GCDAAVQ--YLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPA----IKGLLKGVAAH 505
GC+AAVQ L D+ + V E+ +R + + + ++GL +G+AAH
Sbjct: 325 GCEAAVQQCLYAGLRLNDDAARARVREIVEERTAAIPGEDLHVLGYYEWLEGLERGIAAH 384
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T
Sbjct: 385 HAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITPG 444
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E Q+ GRAGRRGID GH V++ L PL S F SY M +NL+
Sbjct: 445 EYTQLTGRAGRRGIDIEGHAVVLWQRAMDPAALAGLAGTRTYPLRSSFKPSYNMAVNLVQ 504
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCK----IQKE 681
Q GR +R+L+E SF + ++ ++ K ++
Sbjct: 505 -----------------QFGR--HRSRELLETSFAQFQADRSVVGISRQVQKNEAGLEGY 545
Query: 682 TDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELK 718
+ +T + D ++E A L+ ELK
Sbjct: 546 REGMTCHLGD---------------FEEYARLRRELK 567
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 110/241 (45%), Gaps = 28/241 (11%)
Query: 916 HDAVENYKEQRT------KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 969
H E +++QR+ ++ARL+ ++ R + D ++ E + RL+ +++L
Sbjct: 689 HIVPERHRKQRSAAADDREIARLRAEL-RAHPCHGCDEREDHARWAE-RHHRLQRDTRQL 746
Query: 970 TKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRN 1028
+RIE + + F RI ++ E LD + + G+ A + GE +L + LR+
Sbjct: 747 ERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEDGKRLARLYGELDLLASECLRD 803
Query: 1029 KILLDLKPAQLAAVCASLVSEG--------IKVRLWKNNSSIYEPSTTVINVINVLDEHR 1080
++ L PA+LAA ++LV E KV + +++ E ++ + LD
Sbjct: 804 RVWEGLSPAELAACVSALVYEARQADDAVPPKVPGGRVKAALGE----MVRIWGRLDALE 859
Query: 1081 SSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 1139
F + E G P D F+ V WA + E++ + + GD R ++ ID+
Sbjct: 860 EDFKINQTEGVGQREP---DLGFAWAVYQWAEDKSLDEVLREAEMPAGDFVRWTKQVIDV 916
Query: 1140 L 1140
L
Sbjct: 917 L 917
>gi|323447086|gb|EGB03043.1| hypothetical protein AURANDRAFT_12569 [Aureococcus anophagefferens]
Length = 387
Score = 318 bits (814), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 185/440 (42%), Positives = 246/440 (55%), Gaps = 65/440 (14%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F +D FQR ++ + +V+VSAPT SGKT+ E A ++ +R+FYTTPLKALS
Sbjct: 1 FPFPLDAFQRDALRSLRADRNVIVSAPTGSGKTVAGELAIAYALSVGKRVFYTTPLKALS 60
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQKF +F FG VGL TGDS + R+A +++MTTE+ RNM+Y G DV
Sbjct: 61 NQKFGDFCAQFGAGRVGLSTGDSGVRRDAAVVVMTTEVFRNMIYDDEGRAEIAK---DVF 117
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELIT 335
+V DE HY++D RGTVWEE ++ CP +I+ LSATV+NA +AGW+ IHG T+++
Sbjct: 118 AVVFDEFHYMNDAQRGTVWEESVVGCPATARIVALSATVSNARSVAGWMASIHGPTDVVE 177
Query: 336 SSRRPVPLTWYFSTKTALL-PLLD---EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
+ RPVPL + F+ A+L P LD EK K + R D RR
Sbjct: 178 TDFRPVPLRYEFAGDGAVLNPALDKPREKPKRVGR------------------DKFDRRG 219
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
M S I L +L+ RD LPAI+F+F+R
Sbjct: 220 GKFDDGAMPSREI----------------------------LKNLQKRDRLPAIFFVFSR 251
Query: 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFR--------ILYPDAVREPAIKGLLKGVA 503
+GC+ + LLD + E A KR R + D+ RE + L +GVA
Sbjct: 252 KGCENEAAHCGSLQLLD---VDEETRARKRIRAWALENEDVARLDSERE-RVDLLTRGVA 307
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
AHHAG LP +K+ +EELF+ GLVK FATETLAAG+N+PART V++SL KR G LT
Sbjct: 308 AHHAGLLPQYKTLVEELFRDGLVKACFATETLAAGVNLPARTTVVTSLVKRGDDGMEPLT 367
Query: 564 SNELFQMAGRAGRRGIDNRG 583
++ L QMAGRAGRRG D G
Sbjct: 368 TSALLQMAGRAGRRGKDAAG 387
>gi|254579014|ref|XP_002495493.1| ZYRO0B12650p [Zygosaccharomyces rouxii]
gi|238938383|emb|CAR26560.1| ZYRO0B12650p [Zygosaccharomyces rouxii]
Length = 1253
Score = 318 bits (814), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 194/523 (37%), Positives = 286/523 (54%), Gaps = 47/523 (8%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V L +++ F E+I A + F +D FQ+ ++ +G SV V+A TS+GK
Sbjct: 278 EWAHVVDLHHKIDNF-EELIP--NPARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 334
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A N + YT+P+KALSNQKFR+FRETF D VGL+TGD IN EA L
Sbjct: 335 TVVAEYAIAMAKRNMTKTIYTSPIKALSNQKFRDFRETFEDVGVGLITGDVQINPEAGCL 394
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V+
Sbjct: 395 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 448
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366
I LSATV N E A WIG+ K +I++ +RPVPL K ++P+++ +
Sbjct: 449 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINVWAKNEMIPVINSNKQ---- 504
Query: 367 KLSLNYLQLSTSEVKPYKDG--GSRRRNSRKHADMNSNNIVTSF------------GQHQ 412
+L+ + + K DG GS+ + A + G
Sbjct: 505 -----FLEANFKKHKELLDGKPGSKENGTGSSAASRGGSARGGRGGRGGSARGGFRGAGA 559
Query: 413 LSKNSINAIRRSQV-----PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL 467
+ N ++S P++++ HLRS+D+LPA+ F+F+++ C+ +LE N
Sbjct: 560 VGSNKSKFFKKSGPNKKTWPELVN---HLRSKDLLPAVVFVFSKKRCEEYADWLEGVNFC 616
Query: 468 DECEMSEVEL----ALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQ 522
+ E S++ + ++ R R + + I+ LL +G+A HH G LPI K IE +F
Sbjct: 617 NGRERSQIHMFIEKSVTRLRKEDRELPQIIKIRSLLERGIAVHHGGLLPIVKELIEMVFA 676
Query: 523 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 582
+GL++V+FATET A G+N+P RT V S + K G L E QMAGRAGRRG+D
Sbjct: 677 KGLIRVLFATETFAMGLNLPTRTVVFSEIEKHDGQGLRFLNPGEFTQMAGRAGRRGLDKT 736
Query: 583 GHVVLVQTPYEGAEECCKLLFAGVE-PLVSQFTASYGMVLNLL 624
G V+++ K + GV L SQF +Y M+LNLL
Sbjct: 737 GTVIVMTYTDPLPVASFKEVTMGVPTKLESQFRLTYNMILNLL 779
>gi|302561563|ref|ZP_07313905.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
gi|302479181|gb|EFL42274.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
Length = 946
Score = 318 bits (814), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 214/618 (34%), Positives = 317/618 (51%), Gaps = 84/618 (13%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 40 MYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALLQGKKCFYTTPIKAL 99
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 100 SNQKYADLCRRYGTDKVGLLTGDNSVNSDAPVVVMTTEVLRNMLY------AGSQTLLGL 153
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P V ++ LSATV+NA+E W+ + G T++I
Sbjct: 154 GHVVMDEVHYLSDRFRGAVWEEVIIHLPPSVTLVSLSATVSNAEEFGDWLDTVRGDTQVI 213
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KPYKDGGSRRRNS 393
S RPVPL + + L +E G+ + ++ + +++ E +P G RRR
Sbjct: 214 VSEHRPVPLFQHVLAGRRIYDLFEE-GEGRKKAVNPDLTRMARLEAARP--SWGDRRRGR 270
Query: 394 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453
NN+ + + + + + P+VI+ L + +LPAI FIF+R
Sbjct: 271 --------NNMREA--DRERERRQRSRVWTPSRPEVIE---RLDAEGLLPAITFIFSRAA 317
Query: 454 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----PA-----------IKG 497
C+AAVQ +C + + L + R V E PA ++G
Sbjct: 318 CEAAVQ---------QCLFAGLRLNDEEAREQVRSLVEERTASIPAEDLHVLGYYEWLEG 368
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
L +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 369 LERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGE 428
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
+T E Q+ GRAGRRGID GH V++ + L PL S F SY
Sbjct: 429 QHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRAMNPDHLAGLAGTRTYPLRSSFKPSY 488
Query: 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCK 677
M +NL+ Q GR +R+L+E SF + ++ ++ +
Sbjct: 489 NMAVNLVE-----------------QFGR--HRSRELLETSFAQFQADKSVVGISRQVQR 529
Query: 678 IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFS 737
++ D + ++ D ++E A L+ ELK + TEL R+ R +
Sbjct: 530 NEEGLDGYKASMTCHLGD-----------FEEYARLRRELKDRE---TELARQGAAHRRA 575
Query: 738 ALKDILKDFENG---HLP 752
L+ + G H+P
Sbjct: 576 EAAVALEKLKPGDVIHVP 593
Score = 48.5 bits (114), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 114/267 (42%), Gaps = 20/267 (7%)
Query: 910 HMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 969
H++ E H + ++ARL+K++ R + D ++ E + RL + +L
Sbjct: 681 HITPERHHKKRSQAADDREIARLRKEL-RAHPCHGCQDREDHARWAE-RYHRLLRDTSQL 738
Query: 970 TKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK 1029
+RIE + + F RI ++ E L + + G+ A + GE +L + LR
Sbjct: 739 ERRIEGRTNTIARTFDRIVALLTEMDYLRGDE--VTEHGKRLARLYGELDLLASECLREG 796
Query: 1030 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT-------VINVINVLDEHRSS 1082
+ L PA+LAA ++LV E R + + PS ++ + LD
Sbjct: 797 VWEGLAPAELAACVSALVYE---ARAADDAMAPKLPSGRAKAALGEMVRIWGRLDALEED 853
Query: 1083 F-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 1141
F + E G P D F+ WASG E++ + + GD R ++ ID+L
Sbjct: 854 FRISQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAGDFVRWCKQVIDVLG 910
Query: 1142 QI-PKLPDVD-QRLQKNAVDASNVMDR 1166
QI P D + KNA A + + R
Sbjct: 911 QIAAAAPSADGSTVPKNARKAVDGLLR 937
>gi|302550281|ref|ZP_07302623.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
40736]
gi|302467899|gb|EFL30992.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
40736]
Length = 946
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 200/522 (38%), Positives = 280/522 (53%), Gaps = 62/522 (11%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 43 MYDFGLDPFQIEACQALEEGKGVLVAAPTGSGKTIVGEFAVHLALLQGKKCFYTTPIKAL 102
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +G VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 103 SNQKYADLCRRYGTEKVGLLTGDNSVNSDAPVVVMTTEVLRNMLY------AGSQTLLGL 156
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 157 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 216
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGSRRRN 392
S RPVPL + + L +E G+ + ++ + +++ E +P Y+D RR
Sbjct: 217 VSEHRPVPLFQHVLAGRRMYDLFEE-GEGRKKAVNPDLTRMARMEASRPSYQD----RRR 271
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R + + + + I P+VI+ L + +LPAI FIF+R
Sbjct: 272 GRSMREADRER----------ERRQRSRIWTPSRPEVIE---RLDAEGLLPAITFIFSRA 318
Query: 453 GCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVREPA-----------IKGLLK 500
C+AAVQ L L++ E E +L R PA ++GL +
Sbjct: 319 ACEAAVQQCLYAGLRLNDEEAREQVRSLVEERT-----ASIPAEDLHVLGYYEWLEGLER 373
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K
Sbjct: 374 GIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHA 433
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
+T E Q+ GRAGRRGID GH V++ E L PL S F SY M
Sbjct: 434 DITPGEFTQLTGRAGRRGIDVEGHAVVLWQRAMNPEHLAGLAGTRTYPLRSSFKPSYNMA 493
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
+NL+ Q GR +R+L+E SF +
Sbjct: 494 VNLVE-----------------QFGR--HRSRELLETSFAQF 516
Score = 47.0 bits (110), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 18/219 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL + +L +RIE + + F RI ++ E L + + G+ A + G
Sbjct: 728 ERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTELDYLRADE--VTEHGKRLARLYG 785
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSE--------GIKVRLWKNNSSIYEPSTT 1068
E +L + LR + L PA+LAA ++LV E K+ K +++ E
Sbjct: 786 ELDLLASECLREGVWEGLGPAELAACVSALVFESRVADDAMAPKLPSGKAKAALGE---- 841
Query: 1069 VINVINVLDEHRSSFLELQ-EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 1127
++ + LD F Q E G P D F+ WASG E++ + + G
Sbjct: 842 MVRIWGRLDALEEEFRITQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAG 898
Query: 1128 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
D R ++ ID+L QI + KNA +++ R
Sbjct: 899 DFVRWCKQVIDVLGQIAAAAPQGSSVVKNARKGVDLLLR 937
>gi|418463453|ref|ZP_13034462.1| superfamily II RNA helicase [Saccharomonospora azurea SZMC 14600]
gi|359733208|gb|EHK82209.1| superfamily II RNA helicase [Saccharomonospora azurea SZMC 14600]
Length = 918
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 206/524 (39%), Positives = 274/524 (52%), Gaps = 64/524 (12%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F D FQ EA G V+V APT +GKT++ E A +A R+ FYTTP+
Sbjct: 29 FAADVGFTFDDFQVRGCEALEDGHGVLVCAPTGAGKTIVGEFAVHLALAEGRKCFYTTPI 88
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + E +G + VGLLTGD++IN AQI++MTTE+LRNMLY + S L
Sbjct: 89 KALSNQKYGDLVERYGPDTVGLLTGDTSINGGAQIVVMTTEVLRNMLY------AESSAL 142
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
D+ +V+DEVHYL+D RG VWEE+I++ P V+++ LSATV+NA+E W+ ++ G T
Sbjct: 143 DDLGYVVMDEVHYLADRFRGAVWEEVILHLPSYVRVVGLSATVSNAEEFGEWLVEVRGDT 202
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
++ RPVPL + L L + +L+ ++ +D
Sbjct: 203 TVVVDEHRPVPLWQHMLVGGRLFDLF------AGEAVDSGEAKLNPHLLRRVED------ 250
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
+R HA R P++++ L S +LPAI FIF+R
Sbjct: 251 TARMHAPAAFRGRGRR-----GGPFRGPRYRPPARPEIVE---RLDSAGLLPAIVFIFSR 302
Query: 452 RGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPDAVREP----AIKG-------LL 499
GCDAAV Q + L+ E EVE + RI+ P A+ G L
Sbjct: 303 AGCDAAVTQCVRSGLRLNTPE--EVE---QVRRIVDERTADLPQNDLAVLGYWEWREALE 357
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+GVAAHHAG LP +K +EELF RGLVKVVFATETLA GINMPART VL L K
Sbjct: 358 QGVAAHHAGLLPAFKETVEELFVRGLVKVVFATETLALGINMPARTVVLERLVKYNGEAH 417
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
+ LT E Q+ GRAGRRGID GH V+V P + L PL S F Y M
Sbjct: 418 VDLTPGEYTQLTGRAGRRGIDVEGHAVVVWQPGVDPRQVAGLASTRTYPLRSSFRPGYNM 477
Query: 620 VLNLLAGAKVMHLSNESDDMKALQAGR-SLEEARKLVEQSFGNY 662
+NL+ GR ++AR+L+EQSF +
Sbjct: 478 AVNLV--------------------GRFGSDKARELLEQSFAQF 501
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 98/215 (45%), Gaps = 9/215 (4%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ +RL+A +++L +++ S + F RI ++ E LD + + G+ A +
Sbjct: 700 ERYQRLEAETEQLKRKVAATTHSLARAFDRIRRLLSERGYLDADGDAVTEHGQLLARLYS 759
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E++L A +R ++ L PA+LAAV ++LV E + + + PS V
Sbjct: 760 ESDLLAAECIRQRLWHRLAPAELAAVVSTLVYEARR----DSAAEAKLPSGPVSEAWQET 815
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGDLAR 1131
+ ++ + +H ++ D+ F+ V WA G +++ L GD R
Sbjct: 816 VRVWTDLVDDERRHRLDRTREPDAGFAWPVYRWARGEALEKVLTAAEVNGQELSAGDFVR 875
Query: 1132 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
R+ +DLL QI + + + A AS ++ R
Sbjct: 876 WSRQVVDLLDQIRDVLGKEHPVGGAAGKASRLLRR 910
>gi|448111589|ref|XP_004201877.1| Piso0_001340 [Millerozyma farinosa CBS 7064]
gi|359464866|emb|CCE88571.1| Piso0_001340 [Millerozyma farinosa CBS 7064]
Length = 1225
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 207/567 (36%), Positives = 306/567 (53%), Gaps = 60/567 (10%)
Query: 85 DDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGN 144
++E+ + DDV G ++ F +SS +++ W + L +++ F +
Sbjct: 216 NNEKILLDEDDVEGSIA---------FNISSMKKTLEEEKKKSSWAHIVDLEHKIDNF-D 265
Query: 145 EMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRR 204
E+ V ++A + F +D FQ+ +I +G SV V+A TS+GKT+IAE A N +
Sbjct: 266 EV--VPDMAREFPFELDTFQQEAIYHLEQGDSVFVAAHTSAGKTVIAEYAIAMAKRNMTK 323
Query: 205 IFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGM 264
YT+P+KALSNQKFR+F+ETF D +VGL+TGD IN EA LIMTTEILR+MLY+ +
Sbjct: 324 AIYTSPIKALSNQKFRDFKETFKDIDVGLITGDVQINPEANCLIMTTEILRSMLYRGADL 383
Query: 265 VSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
+ DV+ ++ DEVHY++DI RG VWEE+II P ++ I LSATV N E A W+
Sbjct: 384 IR------DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPNHIKYILLSATVPNTFEFANWV 437
Query: 325 GQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 383
G+ K + S+ +RPVPL + K + +D + K S +E K +
Sbjct: 438 GRTKQKDIFVISTPKRPVPLEIFIWAKNNMYKAVDSQRK------------FSETEFKKH 485
Query: 384 KDG--GSRRRNSRKHADMNS----------------NNIVTSFGQHQLSKNSINAIRRSQ 425
K GS +NSR + +++ NN+ S G+ +S+ NA R
Sbjct: 486 KSALEGS-NKNSRPNTVLSNGSRGGRGGTARGGNRGNNLSASRGRGNISQK--NAFMRDG 542
Query: 426 VPQVI--DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE----VELAL 479
+ + HLRS ++LP + F+F+++ C+ L+ + E SE ++ A+
Sbjct: 543 PNKSTWSSLVQHLRSSNLLPVVIFVFSKKKCEEYADTLKGVDFCTGKEKSEIHNFIDKAV 602
Query: 480 KRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 538
R R + + I+ LL +G+A HH G LPI K IE LF + LV+V+FATET A G
Sbjct: 603 SRLRKEDRELPQIMKIRELLGRGIAVHHGGLLPIVKECIEILFSKSLVRVLFATETFAMG 662
Query: 539 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 598
+N+P RT V SS K G L E QM+GRAGRRG+D G V+++ +
Sbjct: 663 LNLPTRTVVFSSYRKHDGRGFRNLLPGEFTQMSGRAGRRGLDTTGTVIIMAYNEPLSPTD 722
Query: 599 CKLLFAGV-EPLVSQFTASYGMVLNLL 624
K + GV L SQF +Y M+LNLL
Sbjct: 723 FKEITLGVPTKLHSQFRLTYNMILNLL 749
>gi|381161954|ref|ZP_09871184.1| superfamily II RNA helicase [Saccharomonospora azurea NA-128]
gi|379253859|gb|EHY87785.1| superfamily II RNA helicase [Saccharomonospora azurea NA-128]
Length = 918
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 206/524 (39%), Positives = 274/524 (52%), Gaps = 64/524 (12%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F D FQ EA G V+V APT +GKT++ E A +A R+ FYTTP+
Sbjct: 29 FAADVGFTFDDFQVRGCEALEDGHGVLVCAPTGAGKTIVGEFAVHLALAEGRKCFYTTPI 88
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + E +G + VGLLTGD++IN AQI++MTTE+LRNMLY + S L
Sbjct: 89 KALSNQKYGDLVERYGPDTVGLLTGDTSINGGAQIVVMTTEVLRNMLY------AESSAL 142
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
D+ +V+DEVHYL+D RG VWEE+I++ P V+++ LSATV+NA+E W+ ++ G T
Sbjct: 143 DDLGYVVMDEVHYLADRFRGAVWEEVILHLPSYVRVVGLSATVSNAEEFGEWLVEVRGDT 202
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
++ RPVPL + L L + +L+ ++ +D
Sbjct: 203 TVVVDEHRPVPLWQHMLVGGRLFDLF------AGEAVDSGEAKLNPHLLRRVED------ 250
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
+R HA R P++++ L S +LPAI FIF+R
Sbjct: 251 TARMHAPAAFRGRGRR-----GGPFRGPRYRPPARPEIVE---RLDSAGLLPAIVFIFSR 302
Query: 452 RGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPDAVREP----AIKG-------LL 499
GCDAAV Q + L+ E EVE + RI+ P A+ G L
Sbjct: 303 AGCDAAVTQCVRSGLRLNTPE--EVE---QVRRIVDERTADLPQNDLAVLGYWEWREALE 357
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+GVAAHHAG LP +K +EELF RGLVKVVFATETLA GINMPART VL L K
Sbjct: 358 QGVAAHHAGLLPAFKETVEELFVRGLVKVVFATETLALGINMPARTVVLERLVKYNGEAH 417
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
+ LT E Q+ GRAGRRGID GH V+V P + L PL S F Y M
Sbjct: 418 VDLTPGEYTQLTGRAGRRGIDVEGHAVVVWQPGVDPRQVAGLASTRTYPLRSSFRPGYNM 477
Query: 620 VLNLLAGAKVMHLSNESDDMKALQAGR-SLEEARKLVEQSFGNY 662
+NL+ GR ++AR+L+EQSF +
Sbjct: 478 AVNLV--------------------GRFGSDKARELLEQSFAQF 501
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 98/215 (45%), Gaps = 9/215 (4%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ +RL+A +++L +++ S + F RI ++ E LD + + G+ A +
Sbjct: 700 ERYQRLEAETEQLKRKVAATTHSLARAFDRIRRLLSERGYLDSDGDAVTEHGQLLARLYS 759
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E++L A +R ++ L PA+LAAV ++LV E + + + PS V
Sbjct: 760 ESDLLAAECIRQRLWHRLAPAELAAVVSTLVYEARR----DSAAEAKLPSGPVSEAWQET 815
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGDLAR 1131
+ ++ + +H ++ D+ F+ V WA G +++ L GD R
Sbjct: 816 VRVWTDLVDDERRHRLDRTREPDAGFAWPVYRWARGEALEKVLTAAEVNGQELSAGDFVR 875
Query: 1132 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
R+ +DLL QI + + + A AS ++ R
Sbjct: 876 WSRQVVDLLDQIRDVLGKEHPVGGAAGKASRLLRR 910
>gi|392400567|ref|YP_006437167.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
Cp162]
gi|390531645|gb|AFM07374.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
Cp162]
Length = 918
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 215/594 (36%), Positives = 311/594 (52%), Gaps = 77/594 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E S F +D FQ +A V+V APT +GKT++ E A ++ + FYTTP
Sbjct: 13 EFISRQKFPLDDFQLQGCQAVEDDRGVLVCAPTGAGKTIVGEFAVSLALSRGTKCFYTTP 72
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQKF + E G VGLLTGD +IN +A +L+MTTE+LRNM+Y +
Sbjct: 73 IKALSNQKFHDLVEVHGAEAVGLLTGDVSINHDADVLVMTTEVLRNMIY------ARSEA 126
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DE+H+LSD SRG VWEE I+ + V+++ LSATV+N++E W+ + G
Sbjct: 127 LTRLTHVVMDEIHFLSDKSRGAVWEEAILGLDESVKVVGLSATVSNSEEFGRWLETVRGD 186
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDE-KGKHMNRKLSLNYLQLSTSEV-----KPYK 384
TE+I S RPVPL + + PL + G +N +L + ++ E +K
Sbjct: 187 TEVIVSEHRPVPLNQWMMVGRRIHPLFEPASGGEVNVRLEEHIGRIEGKEAIDRGRDQFK 246
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
GG R R+S K S+ S+ + R P+V+D L +S+DMLPA
Sbjct: 247 SGGFRARSSGK-----------SYSSRP-SRPQQDRYRPQGRPEVLDVL---QSQDMLPA 291
Query: 445 IWFIFNRRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPD--AVREPAIK----- 496
I FIF+R GC+ A+ Q + +L + + +E E+A RI+ + E +K
Sbjct: 292 ITFIFSRAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIVDAGVAGIPEEDLKVLDFR 346
Query: 497 ----GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L
Sbjct: 347 KWRAALMRGFAAHHAGMLPAFRHIVEELFTKGLVRAVFATETLALGINMPARTVVLEKLV 406
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
K + LT + Q+ GRAGRRGID G+ V+ P L PL+S
Sbjct: 407 KYNGEAHVDLTPGQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLIST 466
Query: 613 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV--GSNVMLA 670
F+ Y M +NLL K + ++ A +L+E+SF + GS V L
Sbjct: 467 FSPGYNMSVNLL---KTIGFTS----------------AHRLLEKSFAQFQADGSVVDLV 507
Query: 671 AKDEL--CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
K E +++ L+S IS++ I++ + E L+ EL E+R
Sbjct: 508 RKIERSETRVKDLESQLSSHISEENIEK----------FLEYITLRRELTDEER 551
Score = 46.6 bits (109), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV--IFPLGETAAAI 1014
EK+ R + + +L +E + K F RI ++ E ++ + + GE A I
Sbjct: 700 EKLARAQKETSQLRTTVETATDTLGKTFDRILGLLGELDYVEFIDAIPRVTEEGENLAKI 759
Query: 1015 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 1074
E++L +A L+ I DL PA+LA V + E K + ++ + + N +
Sbjct: 760 HNESDLLVAQCLKRGIWDDLDPAELAGVVSMCTFENRKETRGEPEAATESMALAMNNTLR 819
Query: 1075 VLDEHRSSFLELQEKHGVEIPCC--LDSQFSGMVEAWASGLTWREMMMDCA-----LDDG 1127
+ DE L + E+ ++P ++ FS + W +G + A L G
Sbjct: 820 LWDE-----LSVNERR-YQLPVTKYPEAGFSLAMHQWTAGAPLGYCLAAAAESGAELTAG 873
Query: 1128 DLARLLRRTIDLLAQI 1143
D R R+ IDLL QI
Sbjct: 874 DFVRQCRQVIDLLEQI 889
>gi|320583622|gb|EFW97835.1| Putative RNA helicase [Ogataea parapolymorpha DL-1]
Length = 1228
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 206/626 (32%), Positives = 326/626 (52%), Gaps = 60/626 (9%)
Query: 80 DIDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVS-----------SDSSPA-PSWREEF 127
D+ + + ++ +DE + V + + IQ++D E E+S S PA P RE
Sbjct: 194 DLTELEQKQVSDEQETVQDQEPEIIQEADVEDEISKFIPASMLTRPSKRKPALPPKRE-- 251
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
W V + + + F +E+ V A + F +D FQ+ ++ + SV V+A TS+GK
Sbjct: 252 -WAHVVDVNHAIPNF-DEL--VPNPARTWPFELDTFQKEAVYHLEKNDSVFVAAHTSAGK 307
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A N + YT+P+KALSNQKFR+F+E+F D +VG++TGD IN EA L
Sbjct: 308 TVVAEYAIALANRNMTKTIYTSPIKALSNQKFRDFKESFDDVDVGVITGDVQINPEANCL 367
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++DI RG VWEE+II P+ +++
Sbjct: 368 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDIERGVVWEEVIIMLPEHIKV 421
Query: 308 ICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366
+ LSATV N E A W+G+ K +I++S+RPVPL + K + L+D G +
Sbjct: 422 VLLSATVPNTYEFASWVGRTRQKDIYVISTSKRPVPLEIFVWAKDDIFKLIDANGSFQQK 481
Query: 367 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 426
L+ +L + P D + ++ G + + +
Sbjct: 482 NFRLHEDKLLKKKDVP--DTNDKGKSGAVVRGGARGGARGGRGGARGGSTMSGKMFKRDG 539
Query: 427 PQVIDTLWH-----LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR 481
P WH L+ +D++PA+ F+F+++ C+ L N E S++ + + +
Sbjct: 540 PN--KNSWHNLVTFLQKKDLMPAVIFVFSKKRCEEYADTLRGVNFCTAKEASQIHMFIDK 597
Query: 482 FRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA 536
RE P I + L +G+A HH G LPI K IE LF + L+KV+FATET A
Sbjct: 598 AVSRLKKEDRELPQILKVREMLSRGIAVHHGGLLPIVKEIIEILFSKTLIKVLFATETFA 657
Query: 537 AGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE 596
G+N+P RT V S L K +G L E QM+GRAGRRG+D+ G V+++ E
Sbjct: 658 MGLNLPTRTVVFSELRKHDGTGYRNLLPGEFTQMSGRAGRRGLDSTGTVIVMAYNQPLEE 717
Query: 597 ECCKLLFAGV-EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV 655
K + G L S+F +Y M+LNLL ++AL+ +++
Sbjct: 718 FAFKEVTMGTATKLSSKFRLTYNMILNLLR-------------IEALR-------VEEMI 757
Query: 656 EQSFGNYVGSNVMLAAKDELCKIQKE 681
++SFG +++ + E+ K++K+
Sbjct: 758 KRSFGENTTQSLLPEHEIEIAKLEKQ 783
>gi|433631214|ref|YP_007264842.1| Putative ATP-dependent DNA helicase HelY [Mycobacterium canettii
CIPT 140070010]
gi|432162807|emb|CCK60193.1| Putative ATP-dependent DNA helicase HelY [Mycobacterium canettii
CIPT 140070010]
Length = 906
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 204/536 (38%), Positives = 277/536 (51%), Gaps = 73/536 (13%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
E+ ++D + F +D FQ+ + A RG V+V APT +GKT++ E A +A
Sbjct: 2 TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGS 61
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ FYTTPLKALSNQK + +G + +GLLTGD ++N A +++MTTE+LRNMLY
Sbjct: 62 KCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLY---- 117
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LSATV+NA+E GW
Sbjct: 118 --ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGW 175
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMNRKLSLNYLQLST 377
I + G T ++ RPVPL + + L D E +NR+L L ++
Sbjct: 176 IQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRSGEAEGQPQVNREL-LRHI---- 230
Query: 378 SEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437
+ RR + + AD T R P+VI L
Sbjct: 231 ----------AHRREADRMADWQPRRRGT---------GRPGFYRPPGRPEVIAK---LD 268
Query: 438 SRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV---------ELALKRFRILY 486
+ +LPAI F+F+R GCDAAV Q L L E E + + +LA +L
Sbjct: 269 AEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLG 328
Query: 487 PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
RE GLL+G+AAHHAG LP ++ +EELF GLVKVVFATETLA GINMPART
Sbjct: 329 YYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKVVFATETLALGINMPARTV 384
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606
VL L K + LT E Q+ GRAGRRGID GH V++ P E L
Sbjct: 385 VLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRT 444
Query: 607 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F SY M +NL +H ++A +L+EQSF Y
Sbjct: 445 FPLRSSFAPSYNMTINL------VHRMGP-------------QQAHRLLEQSFAQY 481
>gi|294628464|ref|ZP_06707024.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
gi|292831797|gb|EFF90146.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
Length = 944
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 220/619 (35%), Positives = 315/619 (50%), Gaps = 87/619 (14%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 40 LYDFGLDPFQIEACQALEEGKGVLVAAPTGSGKTIVGEFAVHLALQQGRKCFYTTPIKAL 99
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +G VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 100 SNQKYSDLCRRYGSGKVGLLTGDNSLNSDAPVVVMTTEVLRNMLY------AGSQTLRGL 153
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G T++I
Sbjct: 154 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTQVI 213
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGSRRRN 392
S RPVPL + + L +E G+ + ++ + +++ E +P Y+D RR
Sbjct: 214 VSEHRPVPLFQHVLAGRRMYDLFEE-GEGRKKAVNPDLTRMARMEASRPSYQD----RRR 268
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R + + + + I P+VI+ L + +LPAI FIF+R
Sbjct: 269 GRAMREADRER----------ERRQRSRIWTPSRPEVIE---RLDAEGLLPAITFIFSRA 315
Query: 453 GCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA--------IKGLLKGV 502
C+AAVQ L DE EV ++ P RE ++GL +G+
Sbjct: 316 ACEAAVQQCLYAGLRLNDEEARDEVRALVEERTAAIP---REDLHVLGYYEWLEGLERGI 372
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +
Sbjct: 373 AAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADI 432
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
T E Q+ GRAGRRGID GH V++ + L PL S F SY M +N
Sbjct: 433 TPGEYTQLTGRAGRRGIDVEGHAVVLWQRGMNPDHLAGLAGTRTYPLRSSFKPSYNMAVN 492
Query: 623 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY------VGSNVMLAAKDELC 676
L+ Q GR +R+L+E SF + VG + + +E
Sbjct: 493 LVE-----------------QFGR--HRSRELLETSFAQFQADKSVVGISRQVQRNEEGL 533
Query: 677 KIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRF 736
KE+ +T + D + E L+ ELK + TEL R+ +R
Sbjct: 534 AGYKES--MTCHLGD---------------FGEYMRLRRELKDRE---TELARQGAAQRR 573
Query: 737 SALKDILKDFENG---HLP 752
+ L+ + G H+P
Sbjct: 574 AEAAVALEKLKPGDVIHVP 592
Score = 48.9 bits (115), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 21/221 (9%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 1015
E+ RL+ +++L RIE + + F RI ++ E LD + + G+ A +
Sbjct: 725 ERYHRLQRDTRQLEHRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEHGKRLARLY 781
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG--------IKVRLWKNNSSIYEPST 1067
GE +L + LR ++ L PA+LAA ++LV E KV K +++ E
Sbjct: 782 GELDLLASECLRERVWEGLGPAELAACVSALVYEARVSDDAMAPKVPSGKAKAALGE--- 838
Query: 1068 TVINVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD 1126
+ + LD F + E G P D F+ W SG E++ + +
Sbjct: 839 -TVRIWGRLDALEEEFRISQTEGVGQREP---DLGFAWAAYEWVSGKGLDEVLREAEMPA 894
Query: 1127 GDLARLLRRTIDLLAQI-PKLPDVDQRLQKNAVDASNVMDR 1166
GD R ++ ID+L QI P + + KNA A + + R
Sbjct: 895 GDFVRWCKQVIDVLGQISAAAPTENSTVAKNARKAVDGLLR 935
>gi|386740364|ref|YP_006213544.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 31]
gi|384477058|gb|AFH90854.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 31]
Length = 918
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 213/594 (35%), Positives = 310/594 (52%), Gaps = 77/594 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E S F +D FQ +A V+V APT +GKT++ E A ++ + FYTTP
Sbjct: 13 EFISRQKFPLDDFQLQGCQAVEDDRGVLVCAPTGAGKTIVGEFAVSLALSRGTKCFYTTP 72
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQKF + E G VGLLTGD +IN +A +L+MTTE+LRNM+Y +
Sbjct: 73 IKALSNQKFHDLVEVHGAEAVGLLTGDVSINHDADVLVMTTEVLRNMIY------ARSEA 126
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DE+H+LSD SRG VWEE I+ + V+++ LSATV+N++E W+ + G
Sbjct: 127 LTRLTHVVMDEIHFLSDKSRGAVWEEAILGLDESVKVVGLSATVSNSEEFGRWLETVRGD 186
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV-----KPYK 384
TE+I S RPVPL + + PL + + G +N +L + ++ E +K
Sbjct: 187 TEVIVSEHRPVPLNQWMMVGRRIHPLFEPDSGGEVNVRLEEHIDRIEGKEAIDRGRDQFK 246
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
GG R R+S K S+ + R P+V+D L +S+DMLPA
Sbjct: 247 SGGFRARSSGKSHSSRP------------SRPQQDRYRPQGRPEVLDVL---QSQDMLPA 291
Query: 445 IWFIFNRRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPD--AVREPAIK----- 496
I FIF+R GC+ A+ Q + +L + + +E E+A RI+ + E +K
Sbjct: 292 ITFIFSRAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIVDAGVAGIPEEDLKVLDFR 346
Query: 497 ----GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
L++G AAHHAG LP ++ +E+LF +GLV+ VFATETLA GINMPART VL L
Sbjct: 347 KWRAALMRGFAAHHAGMLPAFRHIVEKLFTKGLVRAVFATETLALGINMPARTVVLEKLV 406
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
K + LT + Q+ GRAGRRGID G+ V+ P L PL+S
Sbjct: 407 KYNGEAHVDLTPGQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLIST 466
Query: 613 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV--GSNVMLA 670
F+ Y M +NLL K + ++ A +L+E+SF + GS V L
Sbjct: 467 FSPGYNMSVNLL---KTIGFTS----------------AHRLLEKSFAQFQADGSVVDLV 507
Query: 671 AKDEL--CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
K E +++ L+S IS++ I++ + E L+ EL E+R
Sbjct: 508 RKIERSETRVKDLESQLSSHISEENIEK----------FLEYITLRRELTDEER 551
Score = 46.6 bits (109), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV--IFPLGETAAAI 1014
EK+ R + + +L +E + K F RI ++ E ++ + + GE A I
Sbjct: 700 EKLARAQKETSQLRTTVETATDTLGKTFDRILGLLGELDYVEFIDAIPRVTEEGENLAKI 759
Query: 1015 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 1074
E++L +A L+ I DL PA+LA V + E K + ++ + + N +
Sbjct: 760 HNESDLLVAQCLKRGIWDDLDPAELAGVVSMCTFENRKETRGEPEAATESMALAMNNTLR 819
Query: 1075 VLDEHRSSFLELQEKHGVEIPCC--LDSQFSGMVEAWASGLTWREMMMDCA-----LDDG 1127
+ DE L + E+ ++P ++ FS + W +G + A L G
Sbjct: 820 LWDE-----LSVNERR-YQLPVTKYPEAGFSLAMHQWTAGAPLGYCLAAAAESGAELTAG 873
Query: 1128 DLARLLRRTIDLLAQI 1143
D R R+ IDLL QI
Sbjct: 874 DFVRQCRQVIDLLEQI 889
>gi|340627105|ref|YP_004745557.1| putative ATP-dependent DNA helicase HELY [Mycobacterium canettii
CIPT 140010059]
gi|340005295|emb|CCC44451.1| putative ATP-dependent DNA helicase HELY [Mycobacterium canettii
CIPT 140010059]
Length = 906
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 202/536 (37%), Positives = 277/536 (51%), Gaps = 73/536 (13%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
E++++D + F +D FQ+ + A RG V+V APT +GKT++ E A +A
Sbjct: 2 TELVELDRFTADLPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGS 61
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ FYTTPLKALSNQK + +G + +GLLTGD ++N A +++MTTE+LRNMLY
Sbjct: 62 KCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLY---- 117
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LSATV+NA+E GW
Sbjct: 118 --ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGW 175
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMNRKLSLNYLQLST 377
I + G T ++ RPVPL + + L D E +NR+L L ++
Sbjct: 176 IQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNREL-LRHI---- 230
Query: 378 SEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437
+ RR + + AD + R P+VI L
Sbjct: 231 ----------AHRREADRMADWQPR---------RRGSGRPGFYRPPGRPEVIAK---LD 268
Query: 438 SRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV---------ELALKRFRILY 486
+ +LPAI F+F+R GCDAAV Q L L E E + + +LA +L
Sbjct: 269 AEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLG 328
Query: 487 PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART
Sbjct: 329 YYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTV 384
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606
VL L K + LT E Q+ GRAGRRGID GH V++ P E L
Sbjct: 385 VLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRT 444
Query: 607 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F SY M +NL +H ++A +L+EQSF Y
Sbjct: 445 FPLRSSFAPSYNMTINL------VHRMGP-------------QQAHRLLEQSFAQY 481
>gi|255714128|ref|XP_002553346.1| KLTH0D14630p [Lachancea thermotolerans]
gi|238934726|emb|CAR22908.1| KLTH0D14630p [Lachancea thermotolerans CBS 6340]
Length = 1267
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 198/525 (37%), Positives = 289/525 (55%), Gaps = 49/525 (9%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDEL----ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPT 183
+W V L ++++ F DEL A + F +D FQ+ ++ +G SV V+A T
Sbjct: 291 EWAHVVDLNHKIENF-------DELVPSPARTWPFELDVFQKEAVYHLEQGDSVFVAAHT 343
Query: 184 SSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINRE 243
S+GKT++AE A N + YT+P+KALSNQKFR+F+E F D +VGL+TGD IN E
Sbjct: 344 SAGKTVVAEYAIAMAKRNMTKTIYTSPIKALSNQKFRDFKEDFEDVDVGLITGDVQINPE 403
Query: 244 AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK 303
A LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+
Sbjct: 404 ANCLIMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQ 457
Query: 304 EVQIICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGK 362
V+ I LSATV N E A WIG+ K +I++ +RPVPL K L+P+++EK +
Sbjct: 458 HVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKDRLVPVINEKRE 517
Query: 363 HMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR-------------KHADMNSNNIVTSFG 409
+ + E+ K G R+N + A S G
Sbjct: 518 FLEANFK------AHKELVSGKSGPPDRKNEKPGASRGRGGSARGGGAGRGGAGRGGSRG 571
Query: 410 QHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL 467
+ N + +RS + + + HL+S+D+LPA+ F+F+++ C+ +L+ N
Sbjct: 572 AGAVGSNRSDFFKRSGPNKKTWTNLVNHLKSKDLLPAVIFVFSKKRCEDYADWLDGINFC 631
Query: 468 DECEMSE----VELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQ 522
E S+ VE ++ R + D + +K L+ +G+A HH G LPI K IE LF
Sbjct: 632 TAKERSQIHMFVEKSVTRLKKEDRDLPQIIKMKSLVERGIAVHHGGLLPIVKELIELLFA 691
Query: 523 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 582
+GL++V+FATET A G+N+P RT V S + K + L E QMAGRAGRRG+D
Sbjct: 692 KGLIRVLFATETFAMGLNLPTRTVVFSEIQKHDGNSLRNLNPGEFTQMAGRAGRRGLDKT 751
Query: 583 GHVVLVQ--TPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNLL 624
G V+++ +P E A K + GV L SQF +Y M+LNLL
Sbjct: 752 GTVIVMSYTSPLEQA--SFKEVALGVPTRLQSQFRLTYNMILNLL 794
>gi|158316630|ref|YP_001509138.1| DEAD/DEAH box helicase [Frankia sp. EAN1pec]
gi|158112035|gb|ABW14232.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec]
Length = 990
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 208/594 (35%), Positives = 293/594 (49%), Gaps = 75/594 (12%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V+E A+ Y F +D FQ ++ A +G V+V+APT +GKT++ E AA +A R FYT
Sbjct: 8 VEEFAARYPFGLDPFQSEAVAALAQGEGVLVAAPTGAGKTVVGEFAAHLALATGTRCFYT 67
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + +G ++GLLTGD++ N +A +++MTTE+LRNMLY +
Sbjct: 68 TPIKALSNQKYADLVARYGAASIGLLTGDTSRNGDAPVVVMTTEVLRNMLYTE---AAGS 124
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ L + +V+DEVHYL+D RG VWEE+II+ P+ V+++ LSATV+NA+E A W+ +
Sbjct: 125 ARLDSLGYVVMDEVHYLADRQRGAVWEEVIIHLPQHVRLVSLSATVSNAEEFAEWLVTVR 184
Query: 329 GKTELITSSRRPVPLTWYFSTKTAL--------------LPLLDEKGKHMN-RKLSLNYL 373
G T +I S RPVPL + L +P +G N R + +
Sbjct: 185 GHTRVIVSEHRPVPLFQHVLADRTLHDLFVDQPSGLDPGVPAFSRRGPGPNGRGAAPGSV 244
Query: 374 QLSTSEVKPYKDGGSR-------------------------RRNSRKHADMNSNNIVTSF 408
+T +P R SR + +
Sbjct: 245 GGATPGSRPGARAAEARAGDIAGAGAAAGGRAVNPDLLRLAREESRAVYERGRGPRSSRP 304
Query: 409 GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNL 466
G+ + N RRS P D + L +LPAI F+F+R GCDAAV L
Sbjct: 305 GRPGAGNGAGNGRRRSGPPNRPDVIVRLDRAGLLPAILFVFSRVGCDAAVASCIQAGLRL 364
Query: 467 LDECEMSEVELALKRFRILYPDAVREPAI-------KGLLKGVAAHHAGCLPIWKSFIEE 519
E E+ ++ P A + A+ +GL +G+AAHHAG LP +K +EE
Sbjct: 365 TSPDEQREIREHVRARTAGVPQA--DLAVLGYWQWLEGLERGIAAHHAGMLPTFKEVVEE 422
Query: 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 579
LF RGLV+ VFATETLA GINMPART VL L+K R +T E Q+ GRAGRRGI
Sbjct: 423 LFVRGLVRAVFATETLALGINMPARTVVLERLTKFNGQTRADITPGEYTQLTGRAGRRGI 482
Query: 580 DNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDM 639
D GH V++ P L PL S F SY M +NL+
Sbjct: 483 DVEGHAVVLWQPGLDPLALAGLASTRTYPLKSSFRPSYNMAVNLV--------------- 527
Query: 640 KALQAGR-SLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDD 692
GR E AR ++E SF + ++ + + Q + LT+ + D
Sbjct: 528 -----GRLGAERARTVLESSFAQFQADKAVVGIARAVRRNQTAIEELTAALECD 576
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 83/205 (40%), Gaps = 21/205 (10%)
Query: 955 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAI 1014
+ E+I RL+ + L +++E + + F R+ + + E L + + G A I
Sbjct: 747 SAERIDRLRRETAGLERKVEGRTNTVARTFDRVRDTLAELGYLAVGGDSVTDAGAMLARI 806
Query: 1015 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG----IKVRLWKNNSSIYEPSTTVI 1070
E +L +A LR + L P LAA ++LV E I ++ + +
Sbjct: 807 YTEQDLQVAECLRTGVWEGLTPPALAAAVSTLVFEPRGDDIAAPTIPGGGALRDALADMA 866
Query: 1071 NVINVL----DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALD- 1125
V L D HR FL D F + WA G +++ D D
Sbjct: 867 GVYTRLGAAEDHHRLGFLRPP-----------DLGFVAVAHGWACGRGLEKVLEDAGADL 915
Query: 1126 -DGDLARLLRRTIDLLAQIPKLPDV 1149
GD R +R+ IDLL QI ++ V
Sbjct: 916 TAGDFVRWMRQLIDLLDQIAQVAPV 940
>gi|387138626|ref|YP_005694605.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis CIP
52.97]
gi|389850379|ref|YP_006352614.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 258]
gi|349735104|gb|AEQ06582.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis CIP
52.97]
gi|388247685|gb|AFK16676.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 258]
Length = 918
Score = 317 bits (812), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 214/594 (36%), Positives = 310/594 (52%), Gaps = 77/594 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E S F +D FQ +A V+V APT +GKT++ E A ++ + FYTTP
Sbjct: 13 EFISRQKFPLDDFQLQGCQAVEDDRGVLVCAPTGAGKTIVGEFAVSLALSRGTKCFYTTP 72
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQKF + E G VGLLTGD +IN +A +L+MTTE+LRNM+Y +
Sbjct: 73 IKALSNQKFHDLVEVHGAEAVGLLTGDVSINHDADVLVMTTEVLRNMIY------ARSEA 126
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DE+H+LSD SRG VWEE I+ + V+++ LSATV+N++E W+ + G
Sbjct: 127 LTRLTHVVMDEIHFLSDKSRGVVWEEAILGLDESVKVVGLSATVSNSEEFGRWLETVRGD 186
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV-----KPYK 384
TE+I S RPVPL + + PL + + G +N +L + ++ E +K
Sbjct: 187 TEVIVSEHRPVPLNQWMMVGRRIHPLFEPDSGGEVNVRLEEHIDRIEGKEAIDRGRDQFK 246
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
GG R R+S K S+ + R P+V L+ L+S+DMLPA
Sbjct: 247 SGGFRARSSGKSHSSRP------------SRPQQDRYRPQGRPEV---LYVLQSQDMLPA 291
Query: 445 IWFIFNRRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPD--AVREPAIK----- 496
I FIF+R GC+ A+ Q + +L + + +E E+A RI+ + E +K
Sbjct: 292 ITFIFSRAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIVDAGVAGIPEEDLKVLDFR 346
Query: 497 ----GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L
Sbjct: 347 KWRAALMRGFAAHHAGMLPAFRHIVEELFTKGLVRAVFATETLALGINMPARTVVLEKLV 406
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
K + LT + Q+ GRAGRRGID G+ V+ P L PL+S
Sbjct: 407 KYNGEAHVDLTPGQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLIST 466
Query: 613 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV--GSNVMLA 670
F+ Y M +NLL K + ++ A +L+E+SF + GS V L
Sbjct: 467 FSPGYNMSVNLL---KTIGFTS----------------AHRLLEKSFAQFQADGSVVDLV 507
Query: 671 AKDEL--CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
K E +++ L+S IS++ I++ + E L+ EL E+R
Sbjct: 508 RKIERSETRVKDLESQLSSHISEENIEK----------FLEYITLRRELTDEER 551
Score = 46.6 bits (109), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV--IFPLGETAAAI 1014
EK+ R + + +L +E + K F RI ++ E ++ + + GE A I
Sbjct: 700 EKLARAQKETSQLRTTVETATDTLGKTFDRILGLLGELDYVEFIDAIPRVTEEGENLAKI 759
Query: 1015 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 1074
E++L +A L+ I DL PA+LA V + E K + ++ + + N +
Sbjct: 760 HNESDLLVAQCLKRGIWDDLDPAELAGVVSMCTFENRKETRGEPEAATESMALAMNNTLR 819
Query: 1075 VLDEHRSSFLELQEKHGVEIPCC--LDSQFSGMVEAWASGLTWREMMMDCA-----LDDG 1127
+ DE L + E+ ++P ++ FS + W +G + A L G
Sbjct: 820 LWDE-----LSVNERR-YQLPVTKYPEAGFSLAMHQWTAGAPLGYCLAAAAESGAELTAG 873
Query: 1128 DLARLLRRTIDLLAQI 1143
D R R+ IDLL QI
Sbjct: 874 DFVRQCRQVIDLLEQI 889
>gi|433627210|ref|YP_007260839.1| Putative ATP-dependent DNA helicase HelY [Mycobacterium canettii
CIPT 140060008]
gi|432154816|emb|CCK52058.1| Putative ATP-dependent DNA helicase HelY [Mycobacterium canettii
CIPT 140060008]
Length = 906
Score = 317 bits (812), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 202/536 (37%), Positives = 277/536 (51%), Gaps = 73/536 (13%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
E++++D + F +D FQ+ + A RG V+V APT +GKT++ E A +A
Sbjct: 2 TELVELDRFTADLPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGS 61
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ FYTTPLKALSNQK + +G + +GLLTGD ++N A +++MTTE+LRNMLY
Sbjct: 62 KCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLY---- 117
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LSATV+NA+E GW
Sbjct: 118 --ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGW 175
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMNRKLSLNYLQLST 377
I + G T ++ RPVPL + + L D E +NR+L L ++
Sbjct: 176 IQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNREL-LRHI---- 230
Query: 378 SEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437
+ RR + + AD + R P+VI L
Sbjct: 231 ----------AHRREADRMADWQPR---------RRGSGRPGFYRPPGRPEVIAK---LD 268
Query: 438 SRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV---------ELALKRFRILY 486
+ +LPAI F+F+R GCDAAV Q L L E E + + +LA +L
Sbjct: 269 AEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLG 328
Query: 487 PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART
Sbjct: 329 YYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTV 384
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606
VL L K + LT E Q+ GRAGRRGID GH V++ P E L
Sbjct: 385 VLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRT 444
Query: 607 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F SY M +NL +H ++A +L+EQSF Y
Sbjct: 445 FPLRSSFAPSYNMTINL------VHRMGP-------------QQAHRLLEQSFAQY 481
>gi|443291320|ref|ZP_21030414.1| Helicase [Micromonospora lupini str. Lupac 08]
gi|385885722|emb|CCH18521.1| Helicase [Micromonospora lupini str. Lupac 08]
Length = 933
Score = 317 bits (811), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 199/548 (36%), Positives = 270/548 (49%), Gaps = 92/548 (16%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ------ 202
+DE A F +D FQR + ++ RGS V+V APT +GKT++ E A + +
Sbjct: 24 LDEFALDLGFDLDDFQREACQSLERGSGVLVCAPTGAGKTVVGEFAVHLALRGRPDDPAA 83
Query: 203 ----------RRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTE 252
R+ FYTTP+KALSNQK+ + +G VGLLTGD+AIN +A +++MTTE
Sbjct: 84 ADDAATPPIRRKCFYTTPIKALSNQKYHDLVARYGAEQVGLLTGDNAINGDAPVIVMTTE 143
Query: 253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 312
+LRNMLY + S L + +V+DEVHYL+D RG VWEE+II+ P V ++ LSA
Sbjct: 144 VLRNMLY------AGSSTLQGLAYVVMDEVHYLADRFRGGVWEEVIIHLPASVTLVSLSA 197
Query: 313 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 372
TV+NA+E A W+ + G+T ++ S RPVPL + + L + +
Sbjct: 198 TVSNAEEFADWLVTVRGETAVVVSEHRPVPLWQHMLVGKRMFDLFHDADAARKHDVHPEL 257
Query: 373 LQLSTSEVKPYKDG-------GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 425
L+ + +++ + G GS RR R M
Sbjct: 258 LRYTRDQMRRLELGEGRSAGPGSGRRGPRWRGPMR------------------------- 292
Query: 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRIL 485
P ++D L +LPAI FIF+R GC AAVQ L ++ E + R++
Sbjct: 293 -PDIVD---RLDREGLLPAILFIFSRAGCAAAVQQCLAAGL----RLTSPEERAEIRRVV 344
Query: 486 YPDAVREPA-----------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 534
P + GL +G+AAHHAG LP++K +EELF RGLVK VFATET
Sbjct: 345 ESRVTAIPGEDLTVLGYWEWLDGLERGLAAHHAGMLPVFKEIVEELFVRGLVKAVFATET 404
Query: 535 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 594
LA GINMPAR VL L K + LT E Q+ GRAGRRGID GH V+V +P
Sbjct: 405 LALGINMPARCVVLERLVKYNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWSPETD 464
Query: 595 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 654
L PL S F SY M +NL+ E AR L
Sbjct: 465 PRHVAGLASTRTYPLRSSFRPSYNMAVNLVGTVGA-------------------EPARAL 505
Query: 655 VEQSFGNY 662
+E SF +
Sbjct: 506 LESSFAQF 513
>gi|395768461|ref|ZP_10448976.1| helicase [Streptomyces acidiscabies 84-104]
Length = 934
Score = 317 bits (811), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 218/613 (35%), Positives = 318/613 (51%), Gaps = 76/613 (12%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+Y+F +D FQ + A G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 31 MYEFGLDAFQIEACRALEAGKGVLVAAPTGSGKTIVGEFAVHLALGQGKKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 91 SNQKYADLCRRYGADKVGLLTGDNSVNSDAPVVVMTTEVLRNMLY------AGSQTLLGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 145 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGSRRRN 392
S RPVPL + + L +E G+ + ++ + +L+ E KP Y+D R+R
Sbjct: 205 VSEHRPVPLFQHVLAGRRMYDLFEE-GEGSKKAVNPDLARLARMEASKPSYQD---RKRG 260
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+ AD + S + + P+VI+ L + +LPAI FIF+R
Sbjct: 261 RMREADRER------------ERRSRSRVWTPGRPEVIE---RLDAEGLLPAITFIFSRA 305
Query: 453 GCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA--------IKGLLKGV 502
C+AAVQ L D+ +EV ++ P RE ++GL +G+
Sbjct: 306 ACEAAVQQCLYAGLRLNDDESRAEVRALVEERTAAIP---REDLHVLGYFEWLEGLERGI 362
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +
Sbjct: 363 AAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADI 422
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
T E Q+ GRAGRRGID GH V++ E L PL S F SY M +N
Sbjct: 423 TPGEYTQLTGRAGRRGIDVEGHAVVLWQRAMSPEHLAGLAGTRTYPLRSSFRPSYNMAVN 482
Query: 623 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKET 682
L+ Q GR +R+L+E SF + ++ ++ + ++
Sbjct: 483 LVE-----------------QFGR--HRSRELLETSFAQFQADRSVVGISRQVQRNEEGL 523
Query: 683 DVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDI 742
D ++ D ++E A L+ ELK + TEL R+ +R +
Sbjct: 524 DGYKESMTCHLGD-----------FEEYARLRRELKDRE---TELARQGVAQRRAESAVS 569
Query: 743 LKDFENG---HLP 752
L+ + G H+P
Sbjct: 570 LERLKPGDVIHVP 582
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 18/196 (9%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 1015
E+ RL + +L +RIE + + F RI ++ E LD + + G A +
Sbjct: 715 ERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTEHGRRLARLY 771
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTV------ 1069
GE +L + LR + L PA+LAA ++LV E R+ + + PS
Sbjct: 772 GELDLLASECLRAGVWEGLSPAELAACVSALVYE---ARVGDDAMAPKVPSGAAKAALGE 828
Query: 1070 -INVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 1127
+ + LD F + E G P D F+ V WASG E++ + + G
Sbjct: 829 TVRIWGRLDALEEEFKISQTEGVGQREP---DLGFAWAVFMWASGSGLDEVLREAEMPAG 885
Query: 1128 DLARLLRRTIDLLAQI 1143
D R ++ ID+L Q+
Sbjct: 886 DFVRWCKQVIDVLGQV 901
>gi|331697089|ref|YP_004333328.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326951778|gb|AEA25475.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
CB1190]
Length = 924
Score = 316 bits (810), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 203/526 (38%), Positives = 278/526 (52%), Gaps = 60/526 (11%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E + F +D FQR++ +A G V+V APT +GKT++ E A +A + FYTTP
Sbjct: 23 EFVAGLSFELDGFQRAACDALEDGHGVLVCAPTGAGKTVVGEFAVHLALAQGLKCFYTTP 82
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+ + G++ VGLLTGD+++N +AQ+++MTTE+LRNM+Y +
Sbjct: 83 IKALSNQKYADLVARHGESAVGLLTGDTSVNGDAQVVVMTTEVLRNMIY------AGSRH 136
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DEVHYL+D RG VWEE+I+ P+ V ++ LSATV+NA+E W+ + G
Sbjct: 137 LDQLGYVVMDEVHYLADRFRGAVWEEVILQLPEHVALVSLSATVSNAEEFGDWLVTVRGD 196
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
T ++ RPVPL + LL L + G + + L++ V+ ++
Sbjct: 197 TTVVVDEHRPVPLWQHMMVGNRLLDLFVQSGAADD--PTAAELRVDPDLVRQTRE----- 249
Query: 391 RNSRKHADMNSNNIVTSFGQ--HQLSKNSINAIRRSQVPQVIDTLWHLRSRD-MLPAIWF 447
D S+ V G+ Q S R VID L RD +LPAI F
Sbjct: 250 ------LDRQSSTAVWDRGRRGRQGSAPRRVGFRPPSRVTVIDRL----DRDGLLPAITF 299
Query: 448 IFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDA---------VREPAIK 496
+F+R GCDAAV L + E++E+ +++ P RE
Sbjct: 300 VFSRNGCDAAVGQCVRSGLRLTTDDEVAEIRRIVEKHTGDLPQGDLGVLGYWEWRE---- 355
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
GL +G+AAHHAG LP +K +EELF RGLV+ VFATETLA GINMPART VL L K
Sbjct: 356 GLERGIAAHHAGLLPAFKETVEELFVRGLVRCVFATETLALGINMPARTVVLERLVKYNG 415
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
++LT E Q+ GRAGRRGID GH V+V P E L PL S F
Sbjct: 416 EAHVELTPGEYTQLTGRAGRRGIDVEGHAVVVWQPGVDPERVGGLASTRTYPLRSSFRPG 475
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
Y M +NLLA L A RS R+L+E SFG +
Sbjct: 476 YNMAVNLLA---------------RLGAQRS----RELLEMSFGQF 502
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 18/198 (9%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHE---TRALDINTQVIFPLGETAAA 1013
E+ RL +++L +++ S ++F RI ++ E RA + GE A
Sbjct: 703 ERYHRLDRDTEQLRQKVRATTHSLARQFDRIRALLDERGYVRADADGENAVTEHGERLAR 762
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
+ GE++L A LR+ + L +LAAV ++LV E ++N + P V
Sbjct: 763 LWGESDLLAAECLRHGVWERLTAPELAAVVSALVYESR-----RDNGPV--PRVPAGAVS 815
Query: 1074 NVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALD 1125
L + + +L + +H ++ D F+ V WA G + +++ L
Sbjct: 816 EALADTVRLWADLESDERRHRIDRTREPDLGFAWPVHRWARGESLAQVLAAAEQNGHELS 875
Query: 1126 DGDLARLLRRTIDLLAQI 1143
GD R R+ +DLL QI
Sbjct: 876 AGDFVRWCRQVLDLLDQI 893
>gi|337290711|ref|YP_004629732.1| ATP-dependent DNA helicase [Corynebacterium ulcerans BR-AD22]
gi|334699017|gb|AEG83813.1| ATP-dependent DNA helicase [Corynebacterium ulcerans BR-AD22]
Length = 918
Score = 316 bits (810), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 295/1031 (28%), Positives = 459/1031 (44%), Gaps = 192/1031 (18%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E S F +D FQ +A V+V APT +GKT++ E A ++ + FYTTP
Sbjct: 13 EFISRQKFPLDDFQIQGCQAIEDDRGVLVCAPTGAGKTIVGEFAVSLALSRGTKCFYTTP 72
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQKF + E G+ +GLLTGD +IN +A +L+MTTE+LRNM+Y +
Sbjct: 73 IKALSNQKFHDLVEVHGEEAIGLLTGDVSINHDADVLVMTTEVLRNMIY------ARSEA 126
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DE+H+LSD SRG VWEE I+ + V ++ LSATV+N++E W+ + G
Sbjct: 127 LTRLTHVVMDEIHFLSDKSRGAVWEEAILGLDESVSVVGLSATVSNSEEFGRWLETVRGD 186
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV-----KPYK 384
TE+I S RPVP + + PL + + G +N +L + +L E +K
Sbjct: 187 TEVIVSEHRPVPFNQWMMVGRRIHPLFEPDSGGEVNARLEDHIDRLEGKEAIDRGRGQFK 246
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
GG R R+S S + + R P+V+D L +S+DMLPA
Sbjct: 247 AGGFRARSSGDSHSSRS------------GRPRQDRYRPLGRPEVLDVL---QSQDMLPA 291
Query: 445 IWFIFNRRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPD--AVREPAIK----- 496
I FIF+R GC+ A+ Q + +L + + +E E+A RI+ + E +K
Sbjct: 292 ITFIFSRAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIVDAGVAGIPEEDLKVLDFR 346
Query: 497 ----GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L
Sbjct: 347 KWRSALMRGFAAHHAGMLPAFRHIVEELFTKGLVRAVFATETLALGINMPARTVVLEKLV 406
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
K + LT ++ Q+ GRAGRRGID G+ V+ P L PL+S
Sbjct: 407 KYNGEAHVDLTPDQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLIST 466
Query: 613 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV--GSNVMLA 670
F+ Y M +NLL K + + A +L+E+SF + GS V +
Sbjct: 467 FSPGYNMSVNLL---KTIGFT----------------PAHRLLEKSFAQFQADGSVVDVV 507
Query: 671 AKDEL--CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELR 728
E +++K L++ I ++ I+ + E +L+ EL E+R
Sbjct: 508 RNIERSEARVKKLETQLSAHIPEEDIEN----------FVEYIDLRRELTDEER------ 551
Query: 729 RRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMA 788
KR S L+ ++ E V + ++ LG ++ K +A
Sbjct: 552 ---RAKRHS------------------LEQREIE-VSRVLASLNLGDVIAMPGKKRPLLA 589
Query: 789 SINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALA 848
+ + SN ++ D KP W T W V FP +
Sbjct: 590 VV--------VQPSN----NSSDPKP-----------WVTMESGWSGRVDTTAFPMPPVV 626
Query: 849 QGD--------ALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLS 900
G A PR+ ++ + +EKL T+S +
Sbjct: 627 VGHMKLSRATIAQPRKNSKYVVRQ----FEKL----------------TYSRPKRLKAQQ 666
Query: 901 SLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIK 960
++++ + + + R +AR+ +K+AR + KE ++ TV+ + +
Sbjct: 667 RHRPTEKITELRARIRSHPAHQWDNREDLARIGEKLARAQ--KETSRLRTTVETATDTLG 724
Query: 961 RLKARSKRLTKRIEQIEPSGWKEFL-RISNVIHETRALDINTQVIFPLGETAAAIRGENE 1019
+ R L ++ + EF+ I V E GE A I E++
Sbjct: 725 KTFDRILGLLGELDYV------EFIDGIPQVTEE--------------GENLAKIHNESD 764
Query: 1020 LWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 1079
L +A L+ I L PA+LA V + E K + ++ + + N + + DE
Sbjct: 765 LLVAQCLKRGIWDGLDPAELAGVVSMCTFENRKETRGEPEAATEPMAVAMNNTLRLWDE- 823
Query: 1080 RSSFLELQEKHGVEIPCC--LDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARL 1132
L + E+ ++P ++ FS + W +G + A L GD R
Sbjct: 824 ----LSVNERR-YQLPVTKYPEAGFSLAIHQWTAGAPLGYCLAAAAESGAELTAGDFVRQ 878
Query: 1133 LRRTIDLLAQI 1143
R+ IDLL QI
Sbjct: 879 CRQVIDLLEQI 889
>gi|29833237|ref|NP_827871.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
gi|29610359|dbj|BAC74406.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
MA-4680]
Length = 937
Score = 316 bits (810), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 216/616 (35%), Positives = 317/616 (51%), Gaps = 81/616 (13%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 31 MYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALQQGKKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 91 SNQKYADLARRYGADKVGLLTGDNSVNSDAPVVVMTTEVLRNMLY------AGSQTLLGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G T++I
Sbjct: 145 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTQVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGSRRRN 392
S RPVPL + + L +E G+ + ++ + +L+ E +P Y+D R+
Sbjct: 205 VSEHRPVPLFQHVLAGRRMYDLFEE-GEGHKKAVNPDLTRLARMEASRPSYQD----RKR 259
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R + + + + + P+VI+ L + +LPAI FIF+R
Sbjct: 260 GRAMREADRER----------ERRQRSRVWTPGRPEVIE---RLDAEGLLPAITFIFSRA 306
Query: 453 GCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGVAAH 505
C+AAVQ L DE +V ++ P ++GL +G+AAH
Sbjct: 307 ACEAAVQQCLYAGLRLNDEAARDKVRALVEERTASIPTEDLHVLGYYEWLEGLERGIAAH 366
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T
Sbjct: 367 HAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITPG 426
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E Q+ GRAGRRGID GH V++ E L PL S F SY M +NL+
Sbjct: 427 EYTQLTGRAGRRGIDVEGHAVVLWQRGFSPEHLAGLAGTRTYPLRSSFKPSYNMAVNLVD 486
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY------VGSNVMLAAKDELCKIQ 679
Q GR +R+L+E SF + VG + + +E +
Sbjct: 487 -----------------QFGR--HRSRELLETSFAQFQADKSVVGISRQVQRNEEGLEGY 527
Query: 680 KETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSAL 739
KE+ +T + D ++E A L+ ELK + TEL ++ +R +
Sbjct: 528 KES--MTCHLGD---------------FEEYARLRRELKDRE---TELAKQGAAQRRAEA 567
Query: 740 KDILKDFENG---HLP 752
L+ + G H+P
Sbjct: 568 AVALEKLKPGDVIHVP 583
Score = 45.8 bits (107), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 92/218 (42%), Gaps = 18/218 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 1015
E+ RL + +L +RIE + + F RI ++ E LD + + G+ A +
Sbjct: 716 ERYYRLMRDTSQLERRIEGRTNTIARTFDRIVALLTE---LDYLRGDEVTAHGKRLARLY 772
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT------- 1068
GE +L + LR + L PA+LAA ++LV E R+ + + PS
Sbjct: 773 GELDLLASECLRAGVWEGLDPAELAACVSALVYES---RVGDDAMAPKLPSGKAKAALGE 829
Query: 1069 VINVINVLDEHRSSFLELQ-EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDG 1127
++ + LD F Q E G P D F+ WASG E++ + + G
Sbjct: 830 MVRIWGRLDALEEDFRITQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAG 886
Query: 1128 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMD 1165
D R ++ ID+L QI V A +A +D
Sbjct: 887 DFVRWCKQVIDVLGQISAAAPVRGEGSTVAKNARKAVD 924
>gi|395203776|ref|ZP_10394869.1| putative helicase [Propionibacterium humerusii P08]
gi|422439199|ref|ZP_16516022.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
gi|422470686|ref|ZP_16547186.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
gi|422574487|ref|ZP_16650041.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
gi|313837528|gb|EFS75242.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
gi|314927264|gb|EFS91095.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
gi|314972734|gb|EFT16831.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
gi|328907862|gb|EGG27625.1| putative helicase [Propionibacterium humerusii P08]
Length = 916
Score = 316 bits (810), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 188/525 (35%), Positives = 275/525 (52%), Gaps = 41/525 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ ++V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFDPDDYQVKACQDLDDGAGILVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVARHGEDRVGLLTGDVTINSEAPVVVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPHVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
G ++ S RRPVPLT + + L L D H +++ + ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLTQHVAVARHLHGLFD---PHRPTEVNPELVSIAKEEARFQRDDSR 235
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS--QVPQVIDTLWHLRSRDMLPAIW 446
R R N + FG ++ A R P I + L ++LPAI
Sbjct: 236 RPRGRSGKGKRNVSYGTGQFGGASATRRGRTARPRGPRNQPSRIQVVRSLHKANLLPAII 295
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA---------IKG 497
F+F+R GCDAAV L + +L+ + L +R L+ + + + +
Sbjct: 296 FVFSRSGCDAAVNQLLNTDLVLTSQQEARHL--RRIAQLHGEGLTDEERRAVGWTHFVAA 353
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 354 FERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQ 413
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 414 THADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSAFVPTY 473
Query: 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR ++AR L+E SF +
Sbjct: 474 NMAVNLVG-----------------SMGR--DKARDLLEHSFAQF 499
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 18/197 (9%)
Query: 953 KFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAA 1012
+F E + RL RS+R + S +F RI V+ L Q + G +
Sbjct: 701 RFAEHAM-RLSRRSERELAKARAKSTSIATQFERIVLVMEALGYLGEGGQTVTDAGRMLS 759
Query: 1013 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSSIYEPSTTV 1069
I E +L A +R + L QLAAV +++V E G + L + E + +
Sbjct: 760 GIYSELDLVTAEAIRRGVFDGLDFPQLAAVLSTIVHESRPGDRGHLHRMPDRKSEAAQSQ 819
Query: 1070 INVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD--- 1126
+ + R+ L+ H +E P LD F+ AWA+G ++ LDD
Sbjct: 820 LRAV------RAEIGLLERDHRIERPRDLDIGFAETSYAWAAGAG-----LEIVLDDMSA 868
Query: 1127 GDLARLLRRTIDLLAQI 1143
GD R +R+ DL QI
Sbjct: 869 GDFVRQVRQVCDLAGQI 885
>gi|367014127|ref|XP_003681563.1| hypothetical protein TDEL_0E01090 [Torulaspora delbrueckii]
gi|359749224|emb|CCE92352.1| hypothetical protein TDEL_0E01090 [Torulaspora delbrueckii]
Length = 1257
Score = 316 bits (810), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 232/713 (32%), Positives = 355/713 (49%), Gaps = 87/713 (12%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V L +++ F +E+I A + F +D FQ+ ++ +G SV V+A TS+GK
Sbjct: 278 EWAHVVDLNHKIDNF-DELIP--NPARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 334
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A + N + YT+P+KALSNQKFR+F+ETF D VGL+TGD IN EA L
Sbjct: 335 TVVAEYAIAMSKRNMTKTIYTSPIKALSNQKFRDFKETFEDVGVGLITGDVQINPEANCL 394
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V+
Sbjct: 395 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 448
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366
I LSATV N E A WIG+ K +I++ +RPVPL K L+P++ + ++
Sbjct: 449 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKNQLIPVISSNKEFLD- 507
Query: 367 KLSLNYLQLSTSEVKPYKD--GGSRRRNSRKHAD-------------------------M 399
S K +KD G+ ++ K A
Sbjct: 508 -----------SNFKKHKDLLAGAPPKDDTKDAKSGRGGGRGGQRGGLRGGPRGGQRGGR 556
Query: 400 NSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQ 459
+ + G ++ + P +++ +L+S+D+LPA+ F+F+++ C+
Sbjct: 557 GGSRGAGAIGSNKSQFYKRGGPSKKTWPDIVN---YLKSKDLLPAVVFVFSKKRCEEYAD 613
Query: 460 YLEDCNLLDECEMSEVELALKRFRILYPDAVRE-P---AIKGLL-KGVAAHHAGCLPIWK 514
+LE N + E S++ + +++ RE P I+ LL +G+A HH G LPI K
Sbjct: 614 WLEGVNFCNGKEKSQIFMFIEKSVTRLKKEDRELPQILKIRSLLERGIAVHHGGLLPIVK 673
Query: 515 SFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRA 574
IE LF +GL++V+FATET A G+N+P RT + S + K +G L E QMAGRA
Sbjct: 674 ELIEMLFAKGLIRVLFATETFAMGLNLPTRTVIFSEIQKHDGTGLRNLAPGEFTQMAGRA 733
Query: 575 GRRGIDNRGHVVLV--QTPYEGAEECCKLLFAGV-EPLVSQFTASYGMVLNLL--AGAKV 629
GRRG+D G V+++ P + A K + GV L SQF +Y M+LNLL KV
Sbjct: 734 GRRGLDKMGLVIVMAYNEPIQSA--SFKEVTMGVPTKLQSQFRLTYNMILNLLRIEALKV 791
Query: 630 MHL------SNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV-MLAAKDELCKIQKET 682
+ N + Q + E K+ E + GSNV M D + + +K T
Sbjct: 792 EEMIKYSFSENSKQTLLPEQERKINELEEKMEELQLYDKSGSNVDMDKFLDAVVRFRKAT 851
Query: 683 DVLTSEISD-DAIDR--KSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSAL 739
+ E++ DAI K RL+ + A L FRT ++ +
Sbjct: 852 SQMMEELAKTDAIFHALKVGRLIVFRDADDNARLG------FVFRTNMKDNSAVVMTFTQ 905
Query: 740 KDILKDFENGHLPFLC-------LQYKDSEGVEHSVPAVYLGKFDSLDSSKLK 785
+ L E+ HLP++ +K EG ++ + V L + + + LK
Sbjct: 906 PNTLSSGESNHLPYIAGLAKYTVSNFKRFEGTKYFMQEVPLTSIELITAYTLK 958
>gi|452945274|gb|EME50799.1| ATP-dependent RNA helicase HelY [Amycolatopsis decaplanina DSM
44594]
Length = 925
Score = 316 bits (810), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 202/553 (36%), Positives = 286/553 (51%), Gaps = 59/553 (10%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F D FQ EA G V+V APT +GKT++ E A +A R+ FYTTP+
Sbjct: 28 FAAESSFEFDDFQVRGCEALEDGHGVLVCAPTGAGKTVVGEFAVHLALAEGRKCFYTTPI 87
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + +G + VGLLTGD++IN AQ+++MTTE+LRNMLY + S +
Sbjct: 88 KALSNQKYADLVGRYGTDAVGLLTGDTSINGNAQVVVMTTEVLRNMLY------AGSSTI 141
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
++ +V+DEVHYL+D RG VWEE+I++ P+ V+++ LSATV+NA+E W+ ++ G T
Sbjct: 142 GELAYVVMDEVHYLADRFRGAVWEEVILHLPEHVRVVGLSATVSNAEEFGEWLVEVRGDT 201
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-NRKLSLNYLQLSTSEVKPYKDGGSRR 390
++ RPVPL + L+ L + +H +L +N L
Sbjct: 202 TVVVDEHRPVPLWQHMLVGNRLMDLFAGQEEHAPGTELRINPSLL--------------- 246
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
R+ ++ + + + + R + P DT+ L + +LPAI FIF+
Sbjct: 247 ---RRTEEVGRGFAPAGARGQRGRRGVPSRMPRFRPPSRTDTVERLDNAGLLPAIVFIFS 303
Query: 451 RRGCDAAVQYLEDCNLL----DECEMSEVELALKRFRILYPDAVREPAIKG-------LL 499
R GCDAAV L DE E + +R + L P+ + + G L
Sbjct: 304 RAGCDAAVGQCVRSGLRLNGPDEVEKVR-RIVAERTKDL-PEG--DLGVLGYWEWREALE 359
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+G+A HHAG LP +K +EELF +GLVKVVFATETLA GINMPART VL L K
Sbjct: 360 RGIAGHHAGLLPAFKETVEELFVQGLVKVVFATETLALGINMPARTVVLERLVKYNGEAH 419
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
+ LT E Q+ GRAGRRGID GH V+ P ++ L PL S F Y M
Sbjct: 420 VDLTPGEYTQLTGRAGRRGIDVEGHAVVAWQPGIDPKQVGGLASTRTYPLRSSFRPGYNM 479
Query: 620 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 679
+NL+A Q G E AR L+EQSF + ++ + + +
Sbjct: 480 AVNLVA-----------------QVG--AEAARDLLEQSFAQFQADRSVVGTARRIERNK 520
Query: 680 KETDVLTSEISDD 692
+ TS I+ D
Sbjct: 521 EALRGYTSAITGD 533
Score = 46.6 bits (109), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 20/200 (10%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV-----IFPLGETA 1011
E+ +RL A + +L +++ S + F RI ++ E L + + G+
Sbjct: 702 ERYQRLTAETGQLERKVAATTHSLARAFDRILRLLGERGYLGPESNGDGENRVTEHGKRL 761
Query: 1012 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 1071
+ E++L A +R+ + L PA+LAAV ++LV E + EP
Sbjct: 762 TRLYSESDLLAAECIRHDVWKGLAPAELAAVVSTLVFEA-------RRDTAGEPRLPAGK 814
Query: 1072 VINVLDEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----A 1123
V++ ++EL E +H ++ D+ F+ V WA G + +++
Sbjct: 815 VLDAWQATTRLWMELTEDERRHKLDRTREPDAGFAWPVYRWARGESLEKVLTAAEANGQE 874
Query: 1124 LDDGDLARLLRRTIDLLAQI 1143
L GD R R+ IDLL QI
Sbjct: 875 LSAGDFVRWSRQVIDLLDQI 894
>gi|183983077|ref|YP_001851368.1| ATP-dependent DNA helicase HelY [Mycobacterium marinum M]
gi|183176403|gb|ACC41513.1| ATP-dependent DNA helicase HelY [Mycobacterium marinum M]
Length = 918
Score = 316 bits (810), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 207/564 (36%), Positives = 288/564 (51%), Gaps = 61/564 (10%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
E++++ + F +D FQR + A G V+V APT +GKT++ E A +A+
Sbjct: 2 TELVELARFTADLPFALDDFQRRACAALEGGHGVLVCAPTGAGKTVVGEFAVHLALASGG 61
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ FYTTPLKALSNQK + +G + +GLLTGD A+N A +++MTTE+LRNMLY
Sbjct: 62 KCFYTTPLKALSNQKHTDLTARYGRDKIGLLTGDLAVNANAPVVVMTTEVLRNMLY---- 117
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LSATV+NA+E GW
Sbjct: 118 --ADSPALPGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGW 175
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD---EKGKHMNRKLSLNYLQLSTSEV 380
I + G T ++ RPVPL + L L D +K +R+ +N L
Sbjct: 176 IQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYQADKPAVSSRQARVNPDLLRHI-- 233
Query: 381 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 440
+ RR + + +D R V +D S
Sbjct: 234 -------AHRREADRMSDWEPRRSGRGGYGRGGRPRFYRPPPRPDVIATLD------SAG 280
Query: 441 MLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEV-ELALKRFRILYPDAV------- 490
+LPAI F+F+R GCDAAVQ L E E +++ E+ R L D +
Sbjct: 281 LLPAITFVFSRAGCDAAVQQCLRSPLRLTSEEERAQIAEVIDHRCGDLEDDDLAVLGYYE 340
Query: 491 -REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART VL
Sbjct: 341 WRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLE 396
Query: 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY-EGAEECCKLLFAGVE- 607
L K + LT E Q+ GRAGRRGID GH V++ P E A+ A
Sbjct: 397 RLVKFNGEQHVPLTPGEYTQLTGRAGRRGIDVEGHAVVLWHPTDENADPSAVAGLASTRT 456
Query: 608 -PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSN 666
PL S F SY M +NL V H+ E+A +L+EQSF Y
Sbjct: 457 FPLRSSFAPSYNMTINL-----VQHMGP--------------EQAHRLLEQSFAQYQADR 497
Query: 667 VMLAAKDELCKIQKETDVLTSEIS 690
++ + + ++ D L +E+
Sbjct: 498 SVVGLVRGIERGKEMLDELAAELG 521
>gi|451333252|ref|ZP_21903838.1| putative helicase [Amycolatopsis azurea DSM 43854]
gi|449424058|gb|EMD29360.1| putative helicase [Amycolatopsis azurea DSM 43854]
Length = 925
Score = 316 bits (810), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 204/554 (36%), Positives = 288/554 (51%), Gaps = 61/554 (11%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F D FQ EA G V+V APT +GKT++ E A +A R+ FYTTP+
Sbjct: 28 FAAESSFEFDDFQVRGCEALEDGHGVLVCAPTGAGKTVVGEFAVHLALAEGRKCFYTTPI 87
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + +G + VGLLTGD++IN AQ+++MTTE+LRNMLY + S +
Sbjct: 88 KALSNQKYADLVGRYGTDAVGLLTGDTSINGNAQVVVMTTEVLRNMLY------AGSSTI 141
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
++ +V+DEVHYL+D RG VWEE+I++ P+ V+++ LSATV+NA+E W+ ++ G T
Sbjct: 142 GELAYVVMDEVHYLADRFRGAVWEEVILHLPEHVRVVGLSATVSNAEEFGEWLVEVRGDT 201
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-NRKLSLNYLQLSTSEVKPYKDGGSRR 390
++ RPVPL + L+ L + +H +L +N L
Sbjct: 202 TVVVDEHRPVPLWQHMLVGNRLMDLFAGQEEHAPGSELRINPSLL--------------- 246
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
R+ ++ + + + + + R + P DT+ L + +LPAI FIF+
Sbjct: 247 ---RRTEEVGRGFAPAGMRGPRGRRGAPSRMPRFRPPSRTDTVERLDNAGLLPAIVFIFS 303
Query: 451 RRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPDAVREP----AIKG-------L 498
R GCDAAV Q + L+ E EVE K RI+ P + G L
Sbjct: 304 RAGCDAAVGQCVRSGLRLNGPE--EVE---KVRRIVAERTKDLPEGDLGVLGYWEWREAL 358
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+A HHAG LP +K +EELF +GLVKVVFATETLA GINMPART VL L K
Sbjct: 359 ERGIAGHHAGLLPAFKETVEELFVQGLVKVVFATETLALGINMPARTVVLERLVKYNGEA 418
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+ LT E Q+ GRAGRRGID GH V+ P ++ L PL S F Y
Sbjct: 419 HVDLTPGEYTQLTGRAGRRGIDVEGHAVVAWQPGIDPKQVGGLASTRTYPLRSSFRPGYN 478
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKI 678
M +NL+A Q G E AR L+EQSF + ++ + +
Sbjct: 479 MAVNLVA-----------------QVG--AEAARDLLEQSFAQFQADRSVVGTARRIERN 519
Query: 679 QKETDVLTSEISDD 692
++ T+ I+ D
Sbjct: 520 KEALRGYTTAITGD 533
Score = 48.1 bits (113), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 20/200 (10%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV-----IFPLGETA 1011
E+ +RL A +++L +++ S + F RI ++ E L ++ + G+
Sbjct: 702 ERYQRLSAETEQLERKVAATTHSLARAFDRILRLLGERGYLGPESKGDGEDRVTEHGKRL 761
Query: 1012 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 1071
+ E++L A +R+ + L PA+LAAV ++LV E + EP
Sbjct: 762 TRLYSESDLLAAECIRHDLWKGLSPAELAAVVSTLVFEA-------RRDTAGEPRLPAGK 814
Query: 1072 VINVLDEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----A 1123
V++ ++EL E +H ++ D+ F+ V WA G + +++
Sbjct: 815 VVDAWQATTRLWMELTEDERRHKLDRTREPDAGFAWPVYRWARGESLEKVLTAAEANGQE 874
Query: 1124 LDDGDLARLLRRTIDLLAQI 1143
L GD R R+ IDLL QI
Sbjct: 875 LSAGDFVRWSRQVIDLLDQI 894
>gi|410075151|ref|XP_003955158.1| hypothetical protein KAFR_0A05880 [Kazachstania africana CBS 2517]
gi|372461740|emb|CCF56023.1| hypothetical protein KAFR_0A05880 [Kazachstania africana CBS 2517]
Length = 1276
Score = 316 bits (809), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 187/503 (37%), Positives = 273/503 (54%), Gaps = 40/503 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F +D FQ+ ++ +G SV V+A TS+GKT++AE A N + YT+P+K
Sbjct: 310 ARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAKRNMTKTIYTSPIK 369
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFR+F+ETF D ++GL+TGD IN EA LIMTTEILR+MLY+ ++
Sbjct: 370 ALSNQKFRDFKETFQDVDIGLITGDVQINPEANCLIMTTEILRSMLYRGADLIR------ 423
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 424 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 483
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
+I++++RPVPL K L+P+++ + ++ + LS P + + +
Sbjct: 484 YVISTAKRPVPLEINIWAKNQLIPVINPHREFLDANFKKHKDLLSGKPELPGQQNSNTGK 543
Query: 392 NSRKHADMNSNNIVT-------------------SFGQHQLSKNSINAIRRSQVPQVI-- 430
N R + G + N RR+ +
Sbjct: 544 NQRGGQRGGQTGGQRGGQRGGQRAGSQRGGLQRGARGAGAVGSNKSQFFRRAGPNKKTWP 603
Query: 431 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL-------ALKRFR 483
D + +LRS+D+LP + F+F+++ C+ +LE N + E S++ + LK+
Sbjct: 604 DLVNYLRSKDLLPMVVFVFSKKRCEEYADWLEGINFCNNKERSQIHMFIENSITRLKKED 663
Query: 484 ILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 542
P ++ +K LL +G+A HH G LPI K IE LF +G +KV+FATET A G+N+P
Sbjct: 664 RELPQVLK---VKSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLP 720
Query: 543 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 602
RT V S + K +G LT E QMAGRAGRRG+D G V+++ K +
Sbjct: 721 TRTVVFSEIRKHDGNGVRDLTPGEFTQMAGRAGRRGLDKTGTVIVMAYNEPLPLLSFKEV 780
Query: 603 FAGVE-PLVSQFTASYGMVLNLL 624
GV L SQF +Y M+LNLL
Sbjct: 781 TLGVPTKLESQFRLTYNMILNLL 803
>gi|433605012|ref|YP_007037381.1| putative helicase [Saccharothrix espanaensis DSM 44229]
gi|407882865|emb|CCH30508.1| putative helicase [Saccharothrix espanaensis DSM 44229]
Length = 918
Score = 316 bits (809), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 193/521 (37%), Positives = 274/521 (52%), Gaps = 64/521 (12%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
S+ F +D FQ+ + EA G V+V APT +GKT++ E A ++ R+ FYTTP+KA
Sbjct: 29 SVLSFELDPFQQRACEALEDGHGVLVCAPTGAGKTVVGEFAVHLALSEGRKCFYTTPIKA 88
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD 273
LSNQK+ + +G+ VGLLTGD+++N A +++MTTE+LRNMLY + S L
Sbjct: 89 LSNQKYADLVARYGEGKVGLLTGDTSVNGNAPVVVMTTEVLRNMLY------AGSSTLNS 142
Query: 274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 333
+ +V+DEVHYL+D RG VWEE+I++ P+ V+++ LSATV+NA+E W+ ++ G T +
Sbjct: 143 LAYVVMDEVHYLADRFRGPVWEEVILHLPESVRLVGLSATVSNAEEFGEWLVEVRGDTTV 202
Query: 334 ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 393
+ RPVPL + ++ L + +L+ L+ T ++ Y SR +N+
Sbjct: 203 VVDEHRPVPLWQHMLAGGRMMDLFAGEDAEGATRLNPQLLR-HTEDLFRYHVPWSRNKNN 261
Query: 394 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453
+ S + P +D + L +LPAI F+F+R G
Sbjct: 262 KGRPPRGSG---------------------FKPPSRVDIVQRLDGAGLLPAIDFVFSRAG 300
Query: 454 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL------------KG 501
CDAAV L E +EVE+ R + R+ L+ +G
Sbjct: 301 CDAAVGQCVRAGLRLTAE-AEVEV----IREIIDSKTRDLPQGDLMVLGYWEWRDALERG 355
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+A+HHAG LP +K +EELF RGLVKVVFATETLA GINMPART VL L K +
Sbjct: 356 IASHHAGLLPAFKETVEELFVRGLVKVVFATETLALGINMPARTVVLEKLVKYNGEAHVD 415
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
LT E Q+ GRAGRRGID GH V+V P + L PL S F Y M +
Sbjct: 416 LTPGEYTQLTGRAGRRGIDVEGHAVVVWQPGIDPKAVAGLASTRTYPLRSSFRPGYNMAV 475
Query: 622 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
NL+ Q G + AR+++EQSF +
Sbjct: 476 NLVN-----------------QLGAA--AAREILEQSFAQF 497
Score = 44.7 bits (104), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 23/201 (11%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL----DINTQVIFPLGETAA 1012
E+ RL A +++L +++ S +EF RI ++ E L + + + G+
Sbjct: 696 ERYHRLLAETEQLERKVAATTHSLAREFDRIRGLLRERGYLHEQENGPGEEVTEHGKRLT 755
Query: 1013 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG-----IKVRLWKNNSSIYEPST 1067
+ E++L A LR+ + L P +LAAV +SLV E ++ RL P
Sbjct: 756 RLYSESDLLAAECLRHGVWRGLDPGELAAVVSSLVYEARRDGPLETRL---------PPG 806
Query: 1068 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMD-----C 1122
V + + + + + +H ++ D F+ V WA G + +++
Sbjct: 807 KVDDAMTATARLWAELEDDERRHKLDRTRQPDPGFAWPVYRWARGESLEKVLSSSEASGT 866
Query: 1123 ALDDGDLARLLRRTIDLLAQI 1143
L GD R R+ ID L QI
Sbjct: 867 ELGAGDFVRWCRQVIDFLDQI 887
>gi|440701337|ref|ZP_20883532.1| DEAD/DEAH box helicase [Streptomyces turgidiscabies Car8]
gi|440276000|gb|ELP64332.1| DEAD/DEAH box helicase [Streptomyces turgidiscabies Car8]
Length = 908
Score = 316 bits (809), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 189/477 (39%), Positives = 267/477 (55%), Gaps = 29/477 (6%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+Y+F +D FQ + +A G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 1 MYEFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALLQGKKCFYTTPIKAL 60
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 61 SNQKYSDLCRRYGADKVGLLTGDNSVNSDAPVVVMTTEVLRNMLY------AGSQTLLGL 114
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G T++I
Sbjct: 115 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTQVI 174
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
S RPVPL + + L +E G+ + ++ + +L+ E + +R +
Sbjct: 175 VSEHRPVPLFQHVLAGRRMYDLFEE-GEGSRKAVNPDLTRLARMEAQRPSFQDRKRGRAM 233
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
+ AD + S + + P+VI+ L S +LPAI FIF+R C
Sbjct: 234 READRER------------ERRSRSRVWTPGRPEVIE---RLDSEGLLPAITFIFSRAAC 278
Query: 455 DAAVQYLEDCNL-LDECEMSEVELALKRFRIL-YPDAVREPA-----IKGLLKGVAAHHA 507
+AAVQ L L++ E E AL R PD ++GL +G+AAHHA
Sbjct: 279 EAAVQQCLYAGLRLNDDEARERVRALVEERTASIPDEDLHVLGYYEWLEGLERGIAAHHA 338
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
G LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T E
Sbjct: 339 GMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITPGEY 398
Query: 568 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
Q+ GRAGRRGID GH V++ + L PL S F SY M +NL+
Sbjct: 399 TQLTGRAGRRGIDVEGHAVVLWQRGMSPDHLAGLAGTRTYPLRSSFKPSYNMAVNLV 455
Score = 48.1 bits (113), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 105/244 (43%), Gaps = 28/244 (11%)
Query: 916 HDAVENYKEQRTK------VARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRL 969
H E ++QR + +ARL+ I R D ++ E + RL + +L
Sbjct: 641 HIPPERARKQRAQAADDREIARLRTAI-RAHACHGCNDREDHARWAE-RYHRLLRDTSQL 698
Query: 970 TKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIRGENELWLAMVLRN 1028
+RIE + + F RI ++ E LD + + + G+ A + GE +L + LR
Sbjct: 699 ERRIEGRTNTIARTFDRIVALLTE---LDYLRSDEVTEHGKRLARLYGELDLLASECLRA 755
Query: 1029 KILLDLKPAQLAAVCASLVSE--------GIKVRLWKNNSSIYEPSTTVINVINVLDEHR 1080
+ L PA+LAA ++LV E KV K +++ E ++ + LD
Sbjct: 756 GVWEGLSPAELAACVSALVYESRVADDAMAPKVPSGKAKAALGE----MVRIWGRLDALE 811
Query: 1081 SSFLELQ-EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 1139
F Q E G P D F+ WASG E++ + + GD R ++ ID+
Sbjct: 812 EEFRITQSEGVGQREP---DLGFAWAAYEWASGKGLDEVLREAEMPAGDFVRWCKQVIDV 868
Query: 1140 LAQI 1143
L QI
Sbjct: 869 LGQI 872
>gi|448114139|ref|XP_004202502.1| Piso0_001340 [Millerozyma farinosa CBS 7064]
gi|359383370|emb|CCE79286.1| Piso0_001340 [Millerozyma farinosa CBS 7064]
Length = 1224
Score = 316 bits (809), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 211/586 (36%), Positives = 315/586 (53%), Gaps = 55/586 (9%)
Query: 72 EAADEYDDDIDDDDDEEAA----DEYDDVSGEVSDEIQQSDDEFEVS---SDSSPAPSWR 124
E+A E D+ + DE + + ++D G +++I +D+ E S + SS +
Sbjct: 185 ESASELDESQQNTTDEHGSTGPLNLWNDERGN-NEKILLDEDDVEGSIALNISSMKTTLE 243
Query: 125 EEFK---WQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSA 181
EE K W + +L +++ F NE+ V ++A + F +D FQ+ ++ +G SV V+A
Sbjct: 244 EEKKKSSWAHIVELEHKIDNF-NEV--VPDMAREFPFELDTFQQEALYHLEQGDSVFVAA 300
Query: 182 PTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAIN 241
TS+GKT+IAE A N + YT+P+KALSNQKFR+F+ETF D +VGL+TGD IN
Sbjct: 301 HTSAGKTVIAEYAIAMAKRNMTKAIYTSPIKALSNQKFRDFKETFKDIDVGLITGDVQIN 360
Query: 242 REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC 301
EA LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++DI RG VWEE+II
Sbjct: 361 PEANCLIMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDIDRGVVWEEVIIML 414
Query: 302 PKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEK 360
P ++ I LSATV N E A W+G+ K +I++ +RPVPL + K + +D +
Sbjct: 415 PNHIKYILLSATVPNTFEFANWVGRTKQKDIYVISTPKRPVPLEIFIWAKNNMFKAVDSQ 474
Query: 361 GKHMNRKLSLNYLQLSTSEVKPYKDG-GSRRRNSRKHADMNS---------------NNI 404
K S +E K +K +NSR + +++ N+
Sbjct: 475 RK------------FSETEFKKHKSALEGNNKNSRPNTVLSNGSRGGRGGTARGGNRGNL 522
Query: 405 VTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC 464
S G+ +S+ S + HLRS ++LP + F+F+++ C+ L+
Sbjct: 523 SASRGRGNISQKSAFMRDGPNKGTWSSLVQHLRSSNLLPVVIFVFSKKRCEEYADTLKGI 582
Query: 465 NLLDECEMSE----VELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEE 519
+ E SE ++ A+ R R + + I+ LL +G+A HH G LPI K IE
Sbjct: 583 DFCTGKEKSEIHNFIDKAVSRLRKEDRELPQIMKIRELLGRGIAVHHGGLLPIVKECIEI 642
Query: 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 579
LF + LV+V+FATET A G+N+P RT V SS K G L E QM+GRAGRRG+
Sbjct: 643 LFSKSLVRVLFATETFAMGLNLPTRTVVFSSYRKHDGRGFRNLLPGEFTQMSGRAGRRGL 702
Query: 580 DNRGHVVLVQTPYEGAEECCKLLFAGV-EPLVSQFTASYGMVLNLL 624
D G V+++ + K + GV L SQF +Y M+LNLL
Sbjct: 703 DTTGTVIIMAYNDPLSPTDFKEITLGVPTKLHSQFRLTYNMILNLL 748
>gi|296393806|ref|YP_003658690.1| DEAD/DEAH box helicase [Segniliparus rotundus DSM 44985]
gi|296180953|gb|ADG97859.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
44985]
Length = 927
Score = 316 bits (809), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 191/492 (38%), Positives = 257/492 (52%), Gaps = 45/492 (9%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + A G +V APT +GKT++ E AA VA + FYTTP+KALSNQ
Sbjct: 16 FALDPFQERACLAVQDGRGALVCAPTGAGKTIVGEFAAFLAVAKGGKCFYTTPIKALSNQ 75
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K +F G + VGLLTGD ++N EA +++MTTE+LRNM+Y + L + +
Sbjct: 76 KHADFSALLGADQVGLLTGDVSVNSEAPVVVMTTEVLRNMIY------AHSPTLDGLSHV 129
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVHYL+D RG VWEE+I+ P+EV ++ LSATV NA+E W+ Q+ G TE++
Sbjct: 130 VMDEVHYLADQFRGAVWEEVILNLPREVVVVSLSATVGNAEEFGEWLQQVRGDTEVVVEE 189
Query: 338 RRPVPLTWYFSTKTALL----PLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 393
RRPVPL+ + + P E+ + ++ + S+ + RR
Sbjct: 190 RRPVPLSQHVLVGERMFDLEPPPAGEEAQAARQQHGERSADGALSKAE-------RRLRH 242
Query: 394 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--------------IDTLWHLRSR 439
A + + SF + + RR PQ + L
Sbjct: 243 ELEAHIKQQEALASF-------DDPRSPRRRSGPQRAGRRGGPGRVLLPRAKVIGKLEDE 295
Query: 440 DMLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI--- 495
+LPAIWFIF+R GCD AV Q L L E S AL R D+ +
Sbjct: 296 RLLPAIWFIFSRAGCDDAVAQCLRSPLRLISPEQSAQVRALIEERTAQLDSADLKVLGYD 355
Query: 496 ---KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
L +GVAAHHAG +W+ +EELF +G+V+VVFATETLA G+NMPAR+ VL SL
Sbjct: 356 TWKAALERGVAAHHAGMFTLWRHIVEELFAKGMVRVVFATETLALGVNMPARSVVLESLV 415
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
K + LT E Q+ GRAGRRGID RGH VL P A +L + PL S
Sbjct: 416 KFNGESHVDLTPGEYTQLTGRAGRRGIDTRGHAVLRWKPGVRAATMLRLTDSRTYPLRSS 475
Query: 613 FTASYGMVLNLL 624
F SY M +NL+
Sbjct: 476 FRPSYNMSVNLI 487
>gi|300741521|ref|ZP_07071542.1| putative ATP-dependent RNA helicase [Rothia dentocariosa M567]
gi|300380706|gb|EFJ77268.1| putative ATP-dependent RNA helicase [Rothia dentocariosa M567]
Length = 973
Score = 315 bits (808), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 197/545 (36%), Positives = 279/545 (51%), Gaps = 76/545 (13%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQR + ++ G +V+V+APT +GKT++ E + + FYTTP+KALSNQ
Sbjct: 45 FPLDSFQRQACQSVEAGHAVLVAAPTGAGKTVVGEFGIYLALQTGTKAFYTTPIKALSNQ 104
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ +F +G+ +VGLLTGD++IN EA I++MTTE+LRNMLY + + L + +
Sbjct: 105 KYHDFVREYGEESVGLLTGDTSINTEAPIVVMTTEVLRNMLY------AESTTLIGLGYV 158
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
++DEVHYL+D RG VWEE II+ P+ V +I LSATV+N +E W+ + G T++I S
Sbjct: 159 IMDEVHYLADRFRGAVWEEAIIHLPEHVTVISLSATVSNVEEFGAWLDTVRGDTDVILSE 218
Query: 338 RRPVPLTWYFSTKTALLPLL-------DEKGKHMNRK------------LSLNYLQLSTS 378
RPVPL + ++ L E RK L +N L
Sbjct: 219 HRPVPLWQHLMVGNRVIDLFVPDETSQKEASPTKRRKNHTKSPQNAPAGLRINPL---LK 275
Query: 379 EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR- 437
+++P G RR SR +A +H +++ R Q D L R
Sbjct: 276 QLRP----GFRRHTSRHNAP-KRERFRRGRNRHDKHTHALERSRHKTFTQDTDVLRPHRI 330
Query: 438 ----------SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF----- 482
+ +LPAI FIF+R CD AV + N++ E E E ++ +
Sbjct: 331 SRPEMARILDKQGLLPAICFIFSRAACDDAVTQCVNANIVLTTE--EQEQTIRAYIAETT 388
Query: 483 -----RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAA 537
R L+ E GL++GVAAHHAG LP++K +E LF +GL+K+VFATETLA
Sbjct: 389 AHLDNRDLHALGYYE-WRDGLIRGVAAHHAGLLPLFKEVVETLFAQGLIKLVFATETLAL 447
Query: 538 GINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEE 597
GINMPART +L L+K + +T E Q+ GRAGRRGID GH V++ P E+
Sbjct: 448 GINMPARTVILEKLTKFNGETHVDITPGEYTQLTGRAGRRGIDLEGHAVVLWRPGLVPEQ 507
Query: 598 CCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQ 657
L PL S F +Y M NL+A E RK++E
Sbjct: 508 VATLASTRTYPLNSSFRPTYNMAANLIAAYGA-------------------ERTRKILES 548
Query: 658 SFGNY 662
SF +
Sbjct: 549 SFAQF 553
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 16/218 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIR- 1015
E+ ++L A ++ L ++I + + + F RI+ ++ E + ++ L A+R
Sbjct: 757 ERWRKLNAETEGLRRQITRRTNTIAQVFNRIAKLLTEYGYVTADSHNGLKLTTKGEALRK 816
Query: 1016 --GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG----IKVRLWKNNSSIYEPSTTV 1069
GE +L ++ L L DL PA +AA A+L +G I++ + S+ P T+
Sbjct: 817 LYGEKDLLTSICLEKGFLTDLDPAAIAATIAALTYQGKKETIEILPRYPHPSLQAPIATI 876
Query: 1070 INVINVLDEHRSSFLELQEKHGV-EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 1128
+ L+ H +E+H + + P C D + WA G+ + + D L GD
Sbjct: 877 NRELARLNAH-------EERHKLDQTPPC-DLGLVTPIYRWARGMHLAKALEDTDLAAGD 928
Query: 1129 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
R ++ ID L QI +P + L+ + A ++ R
Sbjct: 929 FVRWAKQVIDALDQIAHIPTISPNLRASCEKAIALIRR 966
>gi|289750687|ref|ZP_06510065.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis T92]
gi|289691274|gb|EFD58703.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis T92]
Length = 906
Score = 315 bits (808), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 202/536 (37%), Positives = 276/536 (51%), Gaps = 73/536 (13%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
E+ ++D + F +D FQ+ + A RG V+V APT +GKT++ E A +A
Sbjct: 2 TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGS 61
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ FYTTPLKALSNQK + +G + +GLLTGD ++N A +++MTTE+LRNMLY
Sbjct: 62 KCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLY---- 117
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LSATV+NA+E GW
Sbjct: 118 --ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGW 175
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMNRKLSLNYLQLST 377
I + G T ++ RPVPL + + L D E +NR+L L ++
Sbjct: 176 IQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNREL-LRHI---- 230
Query: 378 SEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437
+ RR + + AD + R P+VI L
Sbjct: 231 ----------AHRREADRMADWQPR---------RRGSGRPGFYRPPGRPEVIAK---LD 268
Query: 438 SRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV---------ELALKRFRILY 486
+ +LPAI F+F+R GCDAAV Q L L E E + + +LA +L
Sbjct: 269 AEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLG 328
Query: 487 PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART
Sbjct: 329 YYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTV 384
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606
VL L K + LT E Q+ GRAGRRGID GH V++ P E L
Sbjct: 385 VLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRT 444
Query: 607 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F SY M +NL +H ++A +L+EQSF Y
Sbjct: 445 FPLRSSFAPSYNMTINL------VHRMGP-------------QQAHRLLEQSFAQY 481
>gi|306968223|ref|ZP_07480884.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu009]
gi|308354201|gb|EFP43052.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu009]
Length = 906
Score = 315 bits (808), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 202/536 (37%), Positives = 276/536 (51%), Gaps = 73/536 (13%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
E+ ++D + F +D FQ+ + A RG V+V APT +GKT++ E A +A
Sbjct: 2 TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGS 61
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ FYTTPLKALSNQK + +G + +GLLTGD ++N A +++MTTE+LRNMLY
Sbjct: 62 KCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLY---- 117
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LSATV+NA+E GW
Sbjct: 118 --ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGW 175
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMNRKLSLNYLQLST 377
I + G T ++ RPVPL + + L D E +NR+L L ++
Sbjct: 176 IQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNREL-LRHI---- 230
Query: 378 SEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437
+ RR + + AD + R P+VI L
Sbjct: 231 ----------AHRREADRMADWQPR---------RRGSGRPGFYRPPGRPEVIAK---LD 268
Query: 438 SRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV---------ELALKRFRILY 486
+ +LPAI F+F+R GCDAAV Q L L E E + + +LA +L
Sbjct: 269 AEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLG 328
Query: 487 PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART
Sbjct: 329 YYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTV 384
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606
VL L K + LT E Q+ GRAGRRGID GH V++ P E L
Sbjct: 385 VLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRT 444
Query: 607 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F SY M +NL +H ++A +L+EQSF Y
Sbjct: 445 FPLRSSFAPSYNMTINL------VHRMGP-------------QQAHRLLEQSFAQY 481
>gi|15609229|ref|NP_216608.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis H37Rv]
gi|15841583|ref|NP_336620.1| DEAD/DEAH box helicase [Mycobacterium tuberculosis CDC1551]
gi|148661907|ref|YP_001283430.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis H37Ra]
gi|148823306|ref|YP_001288060.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis F11]
gi|253798849|ref|YP_003031850.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis KZN
1435]
gi|254232255|ref|ZP_04925582.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis C]
gi|254364905|ref|ZP_04980951.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis str.
Haarlem]
gi|254551125|ref|ZP_05141572.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289443598|ref|ZP_06433342.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis T46]
gi|289447713|ref|ZP_06437457.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis CPHL_A]
gi|289745368|ref|ZP_06504746.1| DEAD-box ATP dependent DNA helicase [Mycobacterium tuberculosis
02_1987]
gi|289754202|ref|ZP_06513580.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis EAS054]
gi|289758209|ref|ZP_06517587.1| DEAD-box ATP dependent DNA helicase [Mycobacterium tuberculosis
T85]
gi|289762254|ref|ZP_06521632.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis GM
1503]
gi|294997036|ref|ZP_06802727.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis 210]
gi|297634673|ref|ZP_06952453.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis KZN
4207]
gi|297731661|ref|ZP_06960779.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis KZN
R506]
gi|298525591|ref|ZP_07013000.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306776333|ref|ZP_07414670.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu001]
gi|306780120|ref|ZP_07418457.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu002]
gi|306784865|ref|ZP_07423187.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu003]
gi|306789231|ref|ZP_07427553.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu004]
gi|306793561|ref|ZP_07431863.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu005]
gi|306803827|ref|ZP_07440495.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu008]
gi|306808400|ref|ZP_07445068.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu007]
gi|306972448|ref|ZP_07485109.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu010]
gi|307080157|ref|ZP_07489327.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu011]
gi|307084738|ref|ZP_07493851.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu012]
gi|313658996|ref|ZP_07815876.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis KZN
V2475]
gi|375296103|ref|YP_005100370.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis KZN
4207]
gi|383307901|ref|YP_005360712.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
RGTB327]
gi|385991445|ref|YP_005909743.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis
CCDC5180]
gi|385995059|ref|YP_005913357.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis
CCDC5079]
gi|385998873|ref|YP_005917171.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis CTRI-2]
gi|392386743|ref|YP_005308372.1| helY [Mycobacterium tuberculosis UT205]
gi|392432315|ref|YP_006473359.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis KZN
605]
gi|397673972|ref|YP_006515507.1| ATP-dependent RNA helicase HelY [Mycobacterium tuberculosis H37Rv]
gi|422813122|ref|ZP_16861497.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
CDC1551A]
gi|424804430|ref|ZP_18229861.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis W-148]
gi|424947785|ref|ZP_18363481.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis NCGM2209]
gi|1731349|sp|Q10701.1|HELY_MYCTU RecName: Full=Probable helicase HelY
gi|13881831|gb|AAK46434.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Mycobacterium
tuberculosis CDC1551]
gi|124601314|gb|EAY60324.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis C]
gi|134150419|gb|EBA42464.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis str.
Haarlem]
gi|148506059|gb|ABQ73868.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis H37Ra]
gi|148721833|gb|ABR06458.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis F11]
gi|253320352|gb|ACT24955.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis KZN
1435]
gi|289416517|gb|EFD13757.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis T46]
gi|289420671|gb|EFD17872.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis CPHL_A]
gi|289685896|gb|EFD53384.1| DEAD-box ATP dependent DNA helicase [Mycobacterium tuberculosis
02_1987]
gi|289694789|gb|EFD62218.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis EAS054]
gi|289709760|gb|EFD73776.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis GM
1503]
gi|289713773|gb|EFD77785.1| DEAD-box ATP dependent DNA helicase [Mycobacterium tuberculosis
T85]
gi|298495385|gb|EFI30679.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308215235|gb|EFO74634.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu001]
gi|308327021|gb|EFP15872.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu002]
gi|308330456|gb|EFP19307.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu003]
gi|308334289|gb|EFP23140.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu004]
gi|308338091|gb|EFP26942.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu005]
gi|308345270|gb|EFP34121.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu007]
gi|308349572|gb|EFP38423.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu008]
gi|308358104|gb|EFP46955.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu010]
gi|308362078|gb|EFP50929.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu011]
gi|308365687|gb|EFP54538.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
SUMu012]
gi|323719391|gb|EGB28530.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
CDC1551A]
gi|326903706|gb|EGE50639.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis W-148]
gi|328458608|gb|AEB04031.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis KZN
4207]
gi|339295013|gb|AEJ47124.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis
CCDC5079]
gi|339298638|gb|AEJ50748.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis
CCDC5180]
gi|344219919|gb|AEN00550.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis CTRI-2]
gi|358232300|dbj|GAA45792.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis NCGM2209]
gi|378545294|emb|CCE37571.1| helY [Mycobacterium tuberculosis UT205]
gi|379028370|dbj|BAL66103.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis str. Erdman
= ATCC 35801]
gi|380721854|gb|AFE16963.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis
RGTB327]
gi|392053724|gb|AFM49282.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis KZN
605]
gi|395138877|gb|AFN50036.1| ATP-dependent RNA helicase HelY [Mycobacterium tuberculosis H37Rv]
gi|440581568|emb|CCG11971.1| putative ATP-DEPENDENT DNA HELICASE HELY [Mycobacterium
tuberculosis 7199-99]
gi|444895609|emb|CCP44867.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis H37Rv]
Length = 906
Score = 315 bits (808), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 202/536 (37%), Positives = 276/536 (51%), Gaps = 73/536 (13%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
E+ ++D + F +D FQ+ + A RG V+V APT +GKT++ E A +A
Sbjct: 2 TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGS 61
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ FYTTPLKALSNQK + +G + +GLLTGD ++N A +++MTTE+LRNMLY
Sbjct: 62 KCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLY---- 117
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LSATV+NA+E GW
Sbjct: 118 --ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGW 175
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMNRKLSLNYLQLST 377
I + G T ++ RPVPL + + L D E +NR+L L ++
Sbjct: 176 IQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNREL-LRHI---- 230
Query: 378 SEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437
+ RR + + AD + R P+VI L
Sbjct: 231 ----------AHRREADRMADWQPR---------RRGSGRPGFYRPPGRPEVIAK---LD 268
Query: 438 SRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV---------ELALKRFRILY 486
+ +LPAI F+F+R GCDAAV Q L L E E + + +LA +L
Sbjct: 269 AEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLG 328
Query: 487 PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART
Sbjct: 329 YYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTV 384
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606
VL L K + LT E Q+ GRAGRRGID GH V++ P E L
Sbjct: 385 VLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRT 444
Query: 607 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F SY M +NL +H ++A +L+EQSF Y
Sbjct: 445 FPLRSSFAPSYNMTINL------VHRMGP-------------QQAHRLLEQSFAQY 481
>gi|31793275|ref|NP_855768.1| ATP-dependent DNA helicase HelY [Mycobacterium bovis AF2122/97]
gi|121637977|ref|YP_978201.1| ATP-dependent DNA helicase helY [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224990471|ref|YP_002645158.1| ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Tokyo 172]
gi|339632127|ref|YP_004723769.1| ATP-dependent DNA helicase [Mycobacterium africanum GM041182]
gi|378771823|ref|YP_005171556.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
Mexico]
gi|449064149|ref|YP_007431232.1| ATP-dependent DNA helicase HelY [Mycobacterium bovis BCG str. Korea
1168P]
gi|31618867|emb|CAD96972.1| PROBABLE ATP-DEPENDENT DNA HELICASE HELY [Mycobacterium bovis
AF2122/97]
gi|121493625|emb|CAL72100.1| Probable ATP-dependent dna helicase helY [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|224773584|dbj|BAH26390.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|339331483|emb|CCC27176.1| putative ATP-dependent DNA helicase HELY [Mycobacterium africanum
GM041182]
gi|341602015|emb|CCC64689.1| probable ATP-dependent DNA helicase helY [Mycobacterium bovis BCG
str. Moreau RDJ]
gi|356594144|gb|AET19373.1| Putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
Mexico]
gi|449032657|gb|AGE68084.1| ATP-dependent DNA helicase HelY [Mycobacterium bovis BCG str. Korea
1168P]
Length = 906
Score = 315 bits (808), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 202/536 (37%), Positives = 276/536 (51%), Gaps = 73/536 (13%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
E+ ++D + F +D FQ+ + A RG V+V APT +GKT++ E A +A
Sbjct: 2 TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGS 61
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ FYTTPLKALSNQK + +G + +GLLTGD ++N A +++MTTE+LRNMLY
Sbjct: 62 KCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLY---- 117
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LSATV+NA+E GW
Sbjct: 118 --ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGW 175
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMNRKLSLNYLQLST 377
I + G T ++ RPVPL + + L D E +NR+L L ++
Sbjct: 176 IQMVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNREL-LRHI---- 230
Query: 378 SEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437
+ RR + + AD + R P+VI L
Sbjct: 231 ----------AHRREADRMADWQPR---------RRGSGRPGFYRPPGRPEVIAK---LD 268
Query: 438 SRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV---------ELALKRFRILY 486
+ +LPAI F+F+R GCDAAV Q L L E E + + +LA +L
Sbjct: 269 AEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLG 328
Query: 487 PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART
Sbjct: 329 YYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTV 384
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606
VL L K + LT E Q+ GRAGRRGID GH V++ P E L
Sbjct: 385 VLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRT 444
Query: 607 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F SY M +NL +H ++A +L+EQSF Y
Sbjct: 445 FPLRSSFAPSYNMTINL------VHRMGP-------------QQAHRLLEQSFAQY 481
>gi|152965851|ref|YP_001361635.1| DEAD/DEAH box helicase [Kineococcus radiotolerans SRS30216]
gi|151360368|gb|ABS03371.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
SRS30216]
Length = 931
Score = 315 bits (808), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 206/551 (37%), Positives = 289/551 (52%), Gaps = 56/551 (10%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
++ + A F +D FQ + A G V+V+APT +GKT++ E AA + R+ FY
Sbjct: 21 ELAQFADTVGFELDGFQLQACRALEAGRGVLVAAPTGAGKTVVGEFAAHLALRTGRKAFY 80
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK+ E E G VGLLTGD+++N EA +++MTTE+LRNMLY +
Sbjct: 81 TTPIKALSNQKYTELVERHGPGAVGLLTGDNSVNGEAPVVVMTTEVLRNMLY-------A 133
Query: 268 ESGLFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326
S L D + +V+DEVHYL+D SRG VWEE+II+ P +V ++ LSATV+NA+E W+
Sbjct: 134 GSSLLDGLGYVVMDEVHYLADRSRGAVWEEVIIHLPADVLVVSLSATVSNAEEFGAWLDT 193
Query: 327 IHGKTELITSSRRPVPLTWYFSTKTALLPLL-DEKGKHM-NRKLSLNYLQLSTSEVKPYK 384
+ G TE++ S RPVPL + + T L L D G + + SL + + V P
Sbjct: 194 VRGDTEVVVSEHRPVPLWQHLAVGTRLYDLFTDPDGDPLEGDEGSL----VPGAIVNPEL 249
Query: 385 DGGSRR--RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
SR+ R R R + Q++DT L + +L
Sbjct: 250 VAMSRQQLRTDRLAGPGGRGRRRGQQRPGPGGSRPPGIGRPASRAQILDT---LDAAGLL 306
Query: 443 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PA------- 494
PAI FIF+R GCDAAV+ L ++ E +R R + + E P+
Sbjct: 307 PAITFIFSRAGCDAAVEQCVAWGL----RLTTPEEG-RRIRAVAEERCAEIPSSDLAVLG 361
Query: 495 ----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
++GL +G+AAHHAG LP++K +E LF GLVK VFATETLA G+NMPAR+ VL
Sbjct: 362 YWEWLEGLERGLAAHHAGLLPVFKETVEHLFAAGLVKAVFATETLALGVNMPARSVVLER 421
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 610
L K + +T E Q+ GRAGRRGID GH V++ + E L PL
Sbjct: 422 LVKWNGQTHVDVTPGEYTQLTGRAGRRGIDVEGHAVVLWSQQTDPEAVAGLASRRTFPLR 481
Query: 611 SQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLA 670
S F +Y M +NL+ Q GR E AR ++E SF + ++
Sbjct: 482 SSFRPTYNMAVNLVE-----------------QVGR--ERARDILETSFAQFQADRAVVG 522
Query: 671 AKDELCKIQKE 681
++ K Q+E
Sbjct: 523 QAQQI-KNQQE 532
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 11/190 (5%)
Query: 956 EEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIR 1015
EEK++R ++ L ++IE + + F R+ +++ E L + + G T I
Sbjct: 720 EEKLRR---DTQGLQRKIEGRTGTIARTFDRVCDLLAELGYLSADGLSVTDEGRTLRRIN 776
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 1075
E +L +A LR+ L PA LAA ++LV E + + + +
Sbjct: 777 AETDLLVAQCLRHGAWSGLSPADLAAAVSTLVHESRRDEGGRPDRIPRRAEAAIATT--- 833
Query: 1076 LDEHR--SSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 1133
HR S + ++ H V D + V WASG E++ + L GD R
Sbjct: 834 ---HRLWSDLTDREDHHKVPATREPDPGLAWAVHRWASGHRLDEVLREADLAAGDFVRRC 890
Query: 1134 RRTIDLLAQI 1143
++ +DLL Q+
Sbjct: 891 KQLVDLLDQV 900
>gi|443490879|ref|YP_007369026.1| ATP-dependent DNA helicase HelY [Mycobacterium liflandii 128FXT]
gi|442583376|gb|AGC62519.1| ATP-dependent DNA helicase HelY [Mycobacterium liflandii 128FXT]
Length = 940
Score = 315 bits (808), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 206/564 (36%), Positives = 285/564 (50%), Gaps = 61/564 (10%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
E++++ + F +D FQR + A G V+V APT +GKT++ E A +A+
Sbjct: 24 TELVELARFTADLPFALDDFQRRACAALEGGHGVLVCAPTGAGKTVVGEFAVHLALASGG 83
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ FYTTPLKALSNQK + +G + +GLLTGD A+N A +++MTTE+LRNMLY
Sbjct: 84 KCFYTTPLKALSNQKHTDLTARYGRDKIGLLTGDLAVNANAPVVVMTTEVLRNMLY---- 139
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LSATV+NA+E GW
Sbjct: 140 --ADSPALPGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGW 197
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD---EKGKHMNRKLSLNYLQLSTSEV 380
I + G T ++ RPVPL + L L D +K +R+ +N L
Sbjct: 198 IQTVRGDTAVVVDEHRPVPLWQHVLVGKRLFDLFDYQADKPAGSSRQARVNPDLLRHI-- 255
Query: 381 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 440
+ RR + + +D R V +D S
Sbjct: 256 -------AHRREADRMSDWEPRRSGRGEYGRGGRPRFYRPPPRPDVIATLD------SAG 302
Query: 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL---KRFRILYPDAV------- 490
+LPAI F+F+R GCDAAVQ L E ++A R L D +
Sbjct: 303 LLPAITFVFSRAGCDAAVQQCLRSPLRLTSEEGRAQIAEVIDHRCGDLEDDDLAVLGYYE 362
Query: 491 -REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART VL
Sbjct: 363 WRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLE 418
Query: 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY-EGAEECCKLLFAGVE- 607
L K + LT E Q+ GRAGRRGID GH V++ P E A+ A
Sbjct: 419 RLVKFNGEQHVPLTPGEYTQLTGRAGRRGIDVEGHAVVLWHPTDENADPSAVAGLASTRT 478
Query: 608 -PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSN 666
PL S F SY M +NL V H+ E+A +L+EQSF Y
Sbjct: 479 FPLRSSFAPSYNMTINL-----VQHMGP--------------EQAHRLLEQSFAQYQADR 519
Query: 667 VMLAAKDELCKIQKETDVLTSEIS 690
++ + + ++ D L +E+
Sbjct: 520 SVVGLVRGIERGREMLDELAAELG 543
>gi|433642272|ref|YP_007288031.1| Putative ATP-dependent DNA helicase HelY [Mycobacterium canettii
CIPT 140070008]
gi|432158820|emb|CCK56120.1| Putative ATP-dependent DNA helicase HelY [Mycobacterium canettii
CIPT 140070008]
Length = 906
Score = 315 bits (808), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 202/536 (37%), Positives = 276/536 (51%), Gaps = 73/536 (13%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
E+ ++D + F +D FQ+ + A RG V+V APT +GKT++ E A +A
Sbjct: 2 TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGS 61
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ FYTTPLKALSNQK + +G + +GLLTGD ++N A +++MTTE+LRNMLY
Sbjct: 62 KCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLY---- 117
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LSATV+NA+E GW
Sbjct: 118 --ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGW 175
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMNRKLSLNYLQLST 377
I + G T ++ RPVPL + + L D E +NR+L L ++
Sbjct: 176 IQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNREL-LRHI---- 230
Query: 378 SEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437
+ RR + + AD + R P+VI L
Sbjct: 231 ----------AHRREADRMADWQPR---------RRGSGRPGFYRPPGRPEVIAK---LD 268
Query: 438 SRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV---------ELALKRFRILY 486
+ +LPAI F+F+R GCDAAV Q L L E E + + +LA +L
Sbjct: 269 AEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLG 328
Query: 487 PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART
Sbjct: 329 YYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTV 384
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606
VL L K + LT E Q+ GRAGRRGID GH V++ P E L
Sbjct: 385 VLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRT 444
Query: 607 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F SY M +NL +H ++A +L+EQSF Y
Sbjct: 445 FPLRSSFAPSYNMTINL------VHRMGP-------------QQAHRLLEQSFAQY 481
>gi|289574773|ref|ZP_06455000.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis K85]
gi|289539204|gb|EFD43782.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis K85]
Length = 906
Score = 315 bits (808), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 202/536 (37%), Positives = 276/536 (51%), Gaps = 73/536 (13%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
E+ ++D + F +D FQ+ + A RG V+V APT +GKT++ E A +A
Sbjct: 2 TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGS 61
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ FYTTPLKALSNQK + +G + +GLLTGD ++N A +++MTTE+LRNMLY
Sbjct: 62 KCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLY---- 117
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LSATV+NA+E GW
Sbjct: 118 --ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGW 175
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMNRKLSLNYLQLST 377
I + G T ++ RPVPL + + L D E +NR+L L ++
Sbjct: 176 IQMVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNREL-LRHI---- 230
Query: 378 SEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437
+ RR + + AD + R P+VI L
Sbjct: 231 ----------AHRREADRMADWQPR---------RRGSGRPGFYRPPGRPEVIAK---LD 268
Query: 438 SRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV---------ELALKRFRILY 486
+ +LPAI F+F+R GCDAAV Q L L E E + + +LA +L
Sbjct: 269 AEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHHCGDLADSDLAVLG 328
Query: 487 PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART
Sbjct: 329 YYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTV 384
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606
VL L K + LT E Q+ GRAGRRGID GH V++ P E L
Sbjct: 385 VLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRT 444
Query: 607 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F SY M +NL +H ++A +L+EQSF Y
Sbjct: 445 FPLRSSFAPSYNMTINL------VHRMGP-------------QQAHRLLEQSFAQY 481
>gi|118617834|ref|YP_906166.1| ATP-dependent DNA helicase HelY [Mycobacterium ulcerans Agy99]
gi|118569944|gb|ABL04695.1| ATP-dependent DNA helicase HelY [Mycobacterium ulcerans Agy99]
Length = 918
Score = 315 bits (808), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 207/564 (36%), Positives = 287/564 (50%), Gaps = 61/564 (10%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
E++++ + F +D FQR + A G V+V APT +GKT++ E A +A+
Sbjct: 2 TELVELARFTADLPFALDDFQRRACAALEGGHGVLVCAPTGAGKTVVGEFAVHLALASGG 61
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ FYTTPLKALSNQK + +G + GLLTGD A+N A +++MTTE+LRNMLY
Sbjct: 62 KCFYTTPLKALSNQKHTDLTARYGRDKTGLLTGDLAVNANAPVVVMTTEVLRNMLY---- 117
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ L + +V+DEVH+L+D RG VWEE+I++ P EV+++ LSATV+NA+E GW
Sbjct: 118 --ADSPALPGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGW 175
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD---EKGKHMNRKLSLNYLQLSTSEV 380
I + G T ++ RPVPL + L L D +K +R+ +N L
Sbjct: 176 IQTVRGDTAVVVDEHRPVPLWQHVLVGKRLFDLFDYQADKPAGSSRQARVNPDLLRHI-- 233
Query: 381 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 440
+ RR + + +D R V +D S
Sbjct: 234 -------AHRREADRMSDWEPRRSGRGEYGRGRRPRFYRPPPRPDVIATLD------SAG 280
Query: 441 MLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEV-ELALKRFRILYPDAV------- 490
+LPAI F+F+R GCDAAVQ L E E +++ E+ R L D +
Sbjct: 281 LLPAITFVFSRAGCDAAVQQCLRSPLRLTSEEERAQIAEVIDHRCGDLEDDDLAVLGYYE 340
Query: 491 -REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART VL
Sbjct: 341 WRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLE 396
Query: 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY-EGAEECCKLLFAGVE- 607
L K + LT E Q+ GRAGRRGID GH V++ P E A+ A
Sbjct: 397 RLVKFNGEQHVPLTPGEYTQLTGRAGRRGIDVEGHAVVLWHPTDENADPSAVAGLASTRT 456
Query: 608 -PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSN 666
PL S F SY M +NL V H+ E+A +L+EQSF Y
Sbjct: 457 FPLRSSFAPSYNMTINL-----VQHMGP--------------EQAHRLLEQSFAQYQADR 497
Query: 667 VMLAAKDELCKIQKETDVLTSEIS 690
++ + + ++ D L +E+
Sbjct: 498 SVVGLVRGIERGREMLDELAAELG 521
>gi|213626368|gb|AAI71377.1| Skiv2l protein [Danio rerio]
Length = 1249
Score = 315 bits (808), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 197/482 (40%), Positives = 265/482 (54%), Gaps = 45/482 (9%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
Y F +D FQ+ +I SV V+A TS+GKT++AE A + + R YT+P+KALS
Sbjct: 315 YPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMTRTIYTSPIKALS 374
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQKFR+F+ TFGD VGLLTGD +N E LIMTTEILR+MLY ++ D++
Sbjct: 375 NQKFRDFKNTFGD--VGLLTGDVQLNPEGSCLIMTTEILRSMLYNGSEVIR------DLE 426
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
++ DEVHY++D RG VWEE++I P+ V II LSATV NA E + WIG+I + +I
Sbjct: 427 WVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVEFSEWIGRIKKRHIYVI 486
Query: 335 TSSRRPVPLTWYF----STKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ +RPVPL Y STKT L LLD G + + Y +
Sbjct: 487 STIKRPVPLEHYLYTGNSTKTQKELFMLLDATGNFLTKGY--------------YAAVEA 532
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
++ + KHA SFG +S+++ A + V Q + L +L R P + F
Sbjct: 533 KKERTSKHAQ--------SFGTKNVSQHNTTASQDRAVWQTL--LNYLSQRQQTPVVAFT 582
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KGLLK-GVA 503
F+R CD + L +L E SE+ L++ R+ P I + LLK G+
Sbjct: 583 FSRTRCDENARSLTSLDLTTSIEKSEIHSFLQKSLTRLRGGDRQLPQILLMRDLLKRGIG 642
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K IE LF RGLVKV+FATET A G+NMPART V S+ K +G L
Sbjct: 643 VHHSGILPILKEVIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLL 702
Query: 564 SNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
E QMAGRAGRRG+D G V +L + E ++ L SQF +Y M+LN
Sbjct: 703 PGEYIQMAGRAGRRGLDATGTVIILCKAGVHDMGELHSMMLGKPTVLHSQFRLTYTMILN 762
Query: 623 LL 624
LL
Sbjct: 763 LL 764
>gi|50285719|ref|XP_445288.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524592|emb|CAG58194.1| unnamed protein product [Candida glabrata]
Length = 1283
Score = 315 bits (807), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 195/535 (36%), Positives = 289/535 (54%), Gaps = 62/535 (11%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V L ++++ F E+I A + F +D FQ+ +I + SV V+A TS+GK
Sbjct: 299 EWAHVVDLNHKIENFS-ELIP--NPARTWPFELDTFQKEAIYHLEQSDSVFVAAHTSAGK 355
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A + N + YT+P+KALSNQKFR+F+ETF D ++GL+TGD IN EA L
Sbjct: 356 TVVAEYAIAMSKRNMTKTIYTSPIKALSNQKFRDFKETFEDVDIGLITGDVQINPEANCL 415
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V+
Sbjct: 416 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 469
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366
I LSATV N E A WIG+ K +I++ +RPVPL K L P+++EK
Sbjct: 470 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKNELKPVINEKR----- 524
Query: 367 KLSLNYLQLSTSEVKPYK---DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI-- 421
+ S + K +K DG S + + K++ ++ + S +A
Sbjct: 525 -------EFSDANFKKHKSLIDGKSAKELTSKNSTATNSRGGAATRGRGGSSRGNSARGG 577
Query: 422 ---------------RRSQV-----------PQVIDTLWHLRSRDMLPAIWFIFNRRGCD 455
+SQ P ++D +LR +++LP + F+F+++ C+
Sbjct: 578 RGGRGGSRGAGAIGSNKSQFFRKGGPNKKTWPNLVD---YLRKKELLPMVVFVFSKKRCE 634
Query: 456 AAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCL 510
+L+ N D E S++ + ++ R + D + I+ LL +G+A HH G L
Sbjct: 635 EYADWLDGINFCDAKERSQIHMFIEKSITRLKKEDRDLPQIQKIRSLLERGIAVHHGGLL 694
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
PI K IE LF +G +KV+FATET A G+N+P RT V S + K +G LT E QM
Sbjct: 695 PIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVVFSEIQKHDGNGLRDLTPGEFTQM 754
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE-PLVSQFTASYGMVLNLL 624
AGRAGRRG+D G V+++ K + GV L SQF +Y M+LNLL
Sbjct: 755 AGRAGRRGLDTIGTVIVMAYTDPLPVTSFKEVTLGVPTKLESQFRLTYNMILNLL 809
>gi|227488945|ref|ZP_03919261.1| helicase [Corynebacterium glucuronolyticum ATCC 51867]
gi|227091129|gb|EEI26441.1| helicase [Corynebacterium glucuronolyticum ATCC 51867]
Length = 884
Score = 315 bits (807), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 209/603 (34%), Positives = 302/603 (50%), Gaps = 97/603 (16%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+DE A+ F +D+FQ + V+V APT +GKT++ E A + + FYT
Sbjct: 8 LDEFAARQLFPLDEFQVDGCRSVESDHGVLVCAPTGAGKTIVGEFAVFLALRRGLKCFYT 67
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + +T+G+ +GLLTGD +IN A I++MTTE+LRNM+Y +
Sbjct: 68 TPIKALSNQKYHDLVDTYGEERIGLLTGDVSINGGADIVVMTTEVLRNMIY------ADS 121
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L + +V+DEVHYLSD RG VWEE+I+ + V I+ LSATV+N++E W+G++
Sbjct: 122 PALARLGYVVMDEVHYLSDRDRGAVWEEVILNLDESVNIVSLSATVSNSEEFGQWLGEVR 181
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
G T++I S RPVPLT Y L PL + + +S+VK
Sbjct: 182 GTTDVIVSEVRPVPLTQYLLVGNQLCPLFNADSTRI------------SSQVK------- 222
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
++ G+ + + RR + + L L MLPAI FI
Sbjct: 223 --------------RAISHQGEQPIGWGQTDRDRRYKPLGRPEVLRLLGGEGMLPAITFI 268
Query: 449 FNRRGCDAAVQYL------------EDC--NLLDEC------EMSEVELALKRFRILYPD 488
F+R GCD AV +DC ++DE E EV L KR+++
Sbjct: 269 FSRAGCDGAVAQCLGARLDLTTDEDKDCIAQIVDEGVEEIPPEDLEV-LGFKRWKL---- 323
Query: 489 AVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
+G AAHHAG LP ++ +E+LF +GL+K VFATETLA GINMPA+T VL
Sbjct: 324 --------ACTRGFAAHHAGMLPAFRHIVEKLFVQGLLKAVFATETLALGINMPAKTVVL 375
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
L K + LT + Q+ GRAGRRGID +G V+V P E L P
Sbjct: 376 ERLVKFNGEAHVDLTPGQFTQLTGRAGRRGIDTQGRAVMVWEPTMDVEAVAGLASTRTYP 435
Query: 609 LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVM 668
LVS F+ Y M +NLL + +N A+ ++E+SF Y +
Sbjct: 436 LVSTFSPGYNMSVNLL---NTIGYAN----------------AKHIIERSFAQYQADKSV 476
Query: 669 LAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEM-ANLQE-ELKAEKRFRTE 726
+ EL K + + L +++ + AID L Y ++ A+L + E KA+K F E
Sbjct: 477 VGKAHELEKASRAVEQLHTQL-EQAIDGPVDEFLE---YMQLRADLTDAERKAKKDFVVE 532
Query: 727 LRR 729
++
Sbjct: 533 RKK 535
Score = 40.0 bits (92), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 16/198 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL----GETAA 1012
E++ R + R L + + K F RI +++ E LD T P G+ A
Sbjct: 667 EQLMREERRRDNLQSAVSSARETLGKTFDRILDLLAE---LDYITPGENPTVTDEGQRLA 723
Query: 1013 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 1072
+ E++L +A L+ I +L PA+LA V + V E K + + +T + N
Sbjct: 724 LLHNESDLLIASCLKRGIWDELDPAELAGVVSMTVFENRKEVRGRVGAPTERMATAMNNT 783
Query: 1073 INVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTW-----REMMMDCALDDG 1127
+ + E S +++H + + + F+ + W +G L G
Sbjct: 784 MRIYTELSSD----EQRHKLALSREPEPGFALAMHQWVAGAPLDYALEAAAASGAELTPG 839
Query: 1128 DLARLLRRTIDLLAQIPK 1145
D R RR ID+L Q+ K
Sbjct: 840 DFVRSCRRVIDVLEQVAK 857
>gi|383831485|ref|ZP_09986574.1| superfamily II RNA helicase [Saccharomonospora xinjiangensis XJ-54]
gi|383464138|gb|EID56228.1| superfamily II RNA helicase [Saccharomonospora xinjiangensis XJ-54]
Length = 946
Score = 315 bits (807), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 195/493 (39%), Positives = 264/493 (53%), Gaps = 48/493 (9%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
AS F D+FQ EA G V+V APT +GKT++ E A +A R+ FYTTP+
Sbjct: 48 FASDVAFTFDEFQIRGCEALEDGHGVLVCAPTGAGKTIVGEFAVHLALAEGRKCFYTTPI 107
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + + +G + VGLLTGD++IN AQI++MTTE+LRNMLY + S L
Sbjct: 108 KALSNQKYGDLVDRYGPDAVGLLTGDTSINGGAQIVVMTTEVLRNMLY------AESSTL 161
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
D+ +V+DEVHYL+D RG VWEE+I++ P V+++ LSATV+NA+E W+ ++ G T
Sbjct: 162 DDLGYVVMDEVHYLADRFRGAVWEEVILHLPSYVRVVGLSATVSNAEEFGEWLMEVRGDT 221
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLL----------DEKGKHMNRKLSLNYLQLSTSEVK 381
+++ RPVPL + +L L EKG+ KL+ L +
Sbjct: 222 DVVVDEHRPVPLWQHMFVGGRMLDLFAGERIDTEGTGEKGEKGEAKLNPQLL-------R 274
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
+D +R HA + + + R + P + + L + +
Sbjct: 275 KVED------TARMHAPAGLRG--------RGRRGAPYRGPRYRPPSRTEIVDRLDAAGL 320
Query: 442 LPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG-- 497
LPAI FIF+R GCDAAV L E+ +V + P + + A+ G
Sbjct: 321 LPAIVFIFSRAGCDAAVAQCVRSRLRLNGPEEIEQVRRIVDERTAELPQS--DLAVLGYW 378
Query: 498 -----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
L +G+AAHHAG LP +K +EELF RGLVKVVFATETLA GINMPART VL L
Sbjct: 379 EWREALEQGIAAHHAGLLPAFKETVEELFVRGLVKVVFATETLALGINMPARTVVLERLV 438
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
K + LT E Q+ GRAGRRGID GH V+V P + L PL S
Sbjct: 439 KYNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWQPGVDPRQVAGLASTRTYPLRSS 498
Query: 613 FTASYGMVLNLLA 625
F Y M +NL+
Sbjct: 499 FRPGYNMAVNLVG 511
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 98/215 (45%), Gaps = 9/215 (4%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ +RL+A +++L +++ S + F RI ++ E LD + G A +
Sbjct: 728 ERYQRLEAETEQLKRKVAATTHSLARAFDRIRRLLSERGFLDTEGDAVTEHGRLLARLYS 787
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E++L A +R ++ L PA+LAAV ++LV E + ++ ST + V
Sbjct: 788 ESDLLAAECIRQRLWHGLAPAELAAVVSTLVYEARRDATTESKLPAGPVSTAWQETVRVW 847
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGDLAR 1131
+ +E + +H ++ D+ F+ V WA G T +++ L GD R
Sbjct: 848 ----TDLVEDERRHRLDRTREPDAGFAWPVYRWARGETLEKVLTAAEVNGQELSAGDFVR 903
Query: 1132 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
R+ +DLL QI + + + A AS ++ R
Sbjct: 904 WSRQVVDLLDQIKDVLGREHPVGGAAGKASRLLRR 938
>gi|420237048|ref|ZP_14741521.1| helicase [Parascardovia denticolens IPLA 20019]
gi|391879744|gb|EIT88248.1| helicase [Parascardovia denticolens IPLA 20019]
Length = 966
Score = 315 bits (807), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 216/622 (34%), Positives = 317/622 (50%), Gaps = 87/622 (13%)
Query: 152 LASIY----DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
LA +Y DF +DKFQR ++ G++V+V+APT +GKT+IA+ A + FY
Sbjct: 98 LAHLYEESLDFDLDKFQRRALTELEAGNNVLVAAPTGAGKTIIADFAIYLARQGNVKAFY 157
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK+ + +G + VGLLTGD +IN EA I++MTTE+LRNMLY+ +++
Sbjct: 158 TTPIKALSNQKYHDLVRIYGPDKVGLLTGDMSINSEADIVVMTTEVLRNMLYEGSTTLTA 217
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
+ ++LDEVHYL+D RG VWEE+II+ PK+V+++ LSATV+N ++ A WI +
Sbjct: 218 ------LRYVILDEVHYLADRMRGQVWEEVIIHLPKDVKVVGLSATVSNVEDFANWIQSV 271
Query: 328 HGKTELITSSRRPVPLTWYFSTKTA------LLPLLDE-----KGKHMNRKLSLNYLQLS 376
GKT LI S +RPVPL + + L L + KG +N +L + QL
Sbjct: 272 RGKTSLIVSEKRPVPLIQEVMLQESDRKEPRLFDLYQDDQEVGKGAKVNPQLIVALDQLE 331
Query: 377 TSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN----------AIRRSQV 426
++R+ A N V ++G+ L N A
Sbjct: 332 RK---------AQRQTFSHQAPGRGKNKVGAYGRKGLKGRHGNRGGGKMPTSSADAGHHT 382
Query: 427 PQ---VIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLE-DCNLLDECEMSEVELALKR 481
P+ V+D L L +LP I+FIF+R GCD AV Q ++ +L E E+ +
Sbjct: 383 PRRWAVVDELDFL---GLLPGIYFIFSRNGCDQAVSQCMQAGLSLTSRKEAQEIRQIVDS 439
Query: 482 FRILYPDAVREPAIK------GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 535
A + A++ L +G+A HHAG + +++ +E+LF++GL+KVVFATETL
Sbjct: 440 MAYGQLTADDKKALRFADFRHALEEGIAPHHAGMITLYRQIVEKLFEQGLLKVVFATETL 499
Query: 536 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 595
A GINMPAR+ V+ L K L+ E Q+ GRAGRRGID G+ V+V P
Sbjct: 500 ALGINMPARSVVVEKLEKFNGVSHETLSPGEFTQLTGRAGRRGIDPVGYSVIVDHPGFLP 559
Query: 596 EECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV 655
+ L V PL S F ++ M +NLL N D L+ AR+ +
Sbjct: 560 QTALALASKRVYPLHSSFAPTFNMAVNLL---------NRYD----------LQTARRTL 600
Query: 656 EQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQE 715
+ SF + L+AK+ +IQ L D A D Y + A+
Sbjct: 601 DHSFAQW---EATLSAKNLDAQIQTSRQTLEGYEKDFACD-----------YGDFADFMR 646
Query: 716 ELKAEKRFRTELRRRMELKRFS 737
A RR+++ +RF+
Sbjct: 647 IRLALTDLERSGRRQLKHQRFA 668
Score = 39.7 bits (91), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 11/166 (6%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKN--NSSI 1062
G+ I E ++ LA VL L L ++A+V ++ V E G + +N
Sbjct: 794 GQLLRRIYSEKDIVLAQVLHEGTLDSLTAEEMASVASAFVYEPRRGSSTGMPRNFPGGEK 853
Query: 1063 YEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC 1122
+ T V+ E L E +G + +D S ++ W + ++ D
Sbjct: 854 GRLAQTAYQVLRTFQEING----LCEDYGTDSLPDIDFGLSEIMFNWVTDKPLTNILRDS 909
Query: 1123 ALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDASNVMDR 1166
L GD R +RT+D+L QI + D D R + A +A+ ++++
Sbjct: 910 DLTGGDFVRNCKRTVDILTQISTVGDFLPDSRTAEVAHEAAALVNK 955
>gi|159902421|gb|ABX10810.1| putative helicase [Glycine max]
gi|159902425|gb|ABX10812.1| putative helicase [Glycine soja]
Length = 184
Score = 315 bits (807), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 150/184 (81%), Positives = 162/184 (88%)
Query: 947 KIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFP 1006
KI+D VKFTEEKIKRLK RSKRL RIEQIEPSGWKEF+++SNVIHE RALDINT +IFP
Sbjct: 1 KIIDAVKFTEEKIKRLKNRSKRLINRIEQIEPSGWKEFMQVSNVIHEIRALDINTHIIFP 60
Query: 1007 LGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPS 1066
LGETAAAIRGENELWLAMVLRNKILL+LKPAQLAAVCASLVS GIKVR KNNS IYEPS
Sbjct: 61 LGETAAAIRGENELWLAMVLRNKILLELKPAQLAAVCASLVSAGIKVRPGKNNSYIYEPS 120
Query: 1067 TTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD 1126
TV I +LDE RS+ L +Q+KH V I CCLDSQF GMVEAWASGLTWRE+MMDCA+DD
Sbjct: 121 ATVTKFITLLDEQRSALLAMQDKHEVTISCCLDSQFCGMVEAWASGLTWRELMMDCAMDD 180
Query: 1127 GDLA 1130
GDLA
Sbjct: 181 GDLA 184
>gi|449551357|gb|EMD42321.1| hypothetical protein CERSUDRAFT_90937 [Ceriporiopsis subvermispora
B]
Length = 1238
Score = 315 bits (806), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 190/510 (37%), Positives = 266/510 (52%), Gaps = 53/510 (10%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V E+A Y F +D FQ+ ++ G SV V+A TS+GKT++AE A + R YT
Sbjct: 274 VPEMAHKYPFELDTFQKQAVYHLEMGDSVFVAAHTSAGKTVVAEYAIALAAKHMTRAIYT 333
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQK+R+F++TF ++VG+LTGD IN EA LIMTTEILR+MLY+ ++
Sbjct: 334 SPIKALSNQKYRDFKQTFSSSSVGILTGDVQINPEANCLIMTTEILRSMLYKGADLIR-- 391
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D RG VWEE+II P V II LSATV N E A W+G+
Sbjct: 392 ----DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTK 447
Query: 329 GK-TELITSSRRPVPLTWYFSTKTALLPLLD-----------EKGKHMNRKLSLNYLQLS 376
K +I++ +RPVPL Y L ++D + G+ + RK
Sbjct: 448 KKDIYVISTPKRPVPLEHYLYAGRDLHKIVDAERNFIGTGYKDAGEALRRKQDKEREAAG 507
Query: 377 TSEVK----------------PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 420
V+ P GG R S + A + +F HQ KN
Sbjct: 508 LPPVQRMGARAAAPQRGGRGGPQARGGQRSGASARGAPVGRGGSPRTF--HQPDKNLF-- 563
Query: 421 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK 480
+ L +LR R +LP + F F+++ C+ L + +L E SE+ +A++
Sbjct: 564 ---------VHLLGNLRKRSLLPVVIFTFSKKRCEENAATLTNADLCTSVEKSEIHVAME 614
Query: 481 RFRILYPDAVRE-PAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 535
+ + R+ P I+ L +G+ HH G LPI K +E LF RGLVKV+FATET
Sbjct: 615 KALSRLKGSDRQLPQIRRMRDLLSRGIGVHHGGLLPIVKEVVEILFARGLVKVLFATETF 674
Query: 536 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 595
A G+NMPAR V S + K + E QMAGRAGRRG+D G V++V
Sbjct: 675 AMGVNMPARCVVFSHIRKHDGKSFRDILPGEYTQMAGRAGRRGLDATGTVIIVANDELPE 734
Query: 596 EECCKLLFAGV-EPLVSQFTASYGMVLNLL 624
+ + G L SQF +Y M+LNLL
Sbjct: 735 QSVLNTMILGTPNKLQSQFRLTYNMILNLL 764
>gi|271967138|ref|YP_003341334.1| nuclear exosomal RNA helicase MTR4 [Streptosporangium roseum DSM
43021]
gi|270510313|gb|ACZ88591.1| putative nuclear exosomal RNA helicase MTR4 ; K01529
[Streptosporangium roseum DSM 43021]
Length = 909
Score = 315 bits (806), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 214/588 (36%), Positives = 297/588 (50%), Gaps = 84/588 (14%)
Query: 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGL 233
G V+V+APT SGKT++ E A + R+ FYTTP+KALSNQK+ + +G VGL
Sbjct: 47 GDGVLVAAPTGSGKTVVGEFAVHLALEQGRKCFYTTPIKALSNQKYNDLVRRYGAAGVGL 106
Query: 234 LTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTV 293
LTGD++IN +A I+IMTTE+LRNMLY G ++ + +V+DEVHYL+D RG V
Sbjct: 107 LTGDNSINGDAPIVIMTTEVLRNMLYAGSGTLAG------LGFVVMDEVHYLADRFRGAV 160
Query: 294 WEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTAL 353
WEE+II+ P+ V+++ LSATV+NA+E W+G++ G T +I RPVPL + L
Sbjct: 161 WEEVIIHLPESVRLVALSATVSNAEEFGEWMGEVRGDTSVIVDEHRPVPLWQHMLAGNRL 220
Query: 354 LPLL--DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQH 411
L DE G+ +++ + ++++ E + G RR SR
Sbjct: 221 YDLFVADEDGRRP--QVNPHLMRIAKDEER-QSYGRGRRGYSRP---------------- 261
Query: 412 QLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLE-DCNLLDE 469
RR+ P + L + +LPAI FIF+R GCDAAV Q L L +
Sbjct: 262 ----------RRAAPPDRASAIERLDADGLLPAITFIFSRAGCDAAVIQCLHAGIRLTTD 311
Query: 470 CEMSEVELALKRFRILYPDAVREPAIKGLL-------KGVAAHHAGCLPIWKSFIEELFQ 522
E ++ + PD + A+ G L +G+AAHHAG LP +K +EELF
Sbjct: 312 AERHQIRQIVDERTAHLPD--EDLAVLGYLEWRDGLERGLAAHHAGMLPAFKEVVEELFT 369
Query: 523 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 582
R LVK VFATETLA GINMPAR+ V+ L K LT E Q+ GRAGRRGID
Sbjct: 370 RNLVKAVFATETLALGINMPARSVVIEKLDKWNGETHADLTPGEYTQLTGRAGRRGIDVE 429
Query: 583 GHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKAL 642
GH V+ P + L PL S F SY M +NL+
Sbjct: 430 GHAVVQWQPGMDPLQVAGLASTRTYPLRSSFRPSYNMAVNLVG----------------- 472
Query: 643 QAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCK----IQKETDVLTSEISDDAIDRKS 698
Q GR E AR L+E SF + ++ ++ + ++ + +T + D
Sbjct: 473 QVGR--ERARTLLESSFAQFQADRAVVGIAKQVRRAEEALEGYREAMTCHLGDFEEYAAM 530
Query: 699 RRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALK--DILK 744
RR LS + + EL R R RR L+ ALK DI++
Sbjct: 531 RRALS--------DREAEL---SRQRGAARRAQALRSLEALKPGDIIR 567
Score = 43.5 bits (101), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 21/248 (8%)
Query: 928 KVARLKKKIAR--TEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFL 985
++ RL+K I + G E + D ++ E K L+ ++ L +R+E + F
Sbjct: 665 EINRLRKAIRQHPCHGCDERE---DHARWAERYYKLLR-ETEGLRRRVEGRSHVIARTFD 720
Query: 986 RISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCAS 1045
++ V+ + L+ + + G A + E +L A LR + +L PA+LAAV +S
Sbjct: 721 KVCGVLDQLGYLE--GESVTAEGRRLAQLYTELDLLTAECLRAGLWEELDPAELAAVVSS 778
Query: 1046 LVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQE---KHGVEIPCCLDSQF 1102
LV E + +P V L + + EL+ HG+ D F
Sbjct: 779 LVFES------RQADDARQPRIPAGGVQKALGDMVRLWGELESIEGDHGLSFIREPDFGF 832
Query: 1103 SGMVEAWASGLTWREMMMD----CALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAV 1158
+ WA G ++ D L GD R +++ +DLL QI ++++N
Sbjct: 833 AWAAFRWAKGQNLDAVLRDGVNGAELAAGDFVRWIKQLLDLLGQISDAAPKSSKVKQNTG 892
Query: 1159 DASNVMDR 1166
A + + R
Sbjct: 893 KAMDALRR 900
>gi|227542061|ref|ZP_03972110.1| helicase [Corynebacterium glucuronolyticum ATCC 51866]
gi|227182112|gb|EEI63084.1| helicase [Corynebacterium glucuronolyticum ATCC 51866]
Length = 884
Score = 315 bits (806), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 209/600 (34%), Positives = 302/600 (50%), Gaps = 97/600 (16%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+DE A+ F +D+FQ + V+V APT +GKT++ E A + + FYT
Sbjct: 8 LDEFAARQLFPLDEFQVDGCRSVESDHGVLVCAPTGAGKTIVGEFAVFLALRRGLKCFYT 67
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + +T+G+ +GLLTGD +IN A I++MTTE+LRNM+Y +
Sbjct: 68 TPIKALSNQKYHDLVDTYGEERIGLLTGDVSINGGADIVVMTTEVLRNMIY------ADS 121
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L + +V+DEVHYLSD RG VWEE+I+ + V I+ LSATV+N++E W+G++
Sbjct: 122 PALARLGYVVMDEVHYLSDRDRGAVWEEVILNLDESVNIVSLSATVSNSEEFGQWLGEVR 181
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
G T++I S RPVPLT Y L PL + + +S+VK
Sbjct: 182 GTTDVIVSEVRPVPLTQYLLVGNQLCPLFNADSTRI------------SSQVK------- 222
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
++ G+ + + RR + + L L MLPAI FI
Sbjct: 223 --------------RAISHQGEQPIGWGQTDRDRRYKPLGRPEVLRLLGGEGMLPAITFI 268
Query: 449 FNRRGCDAAV-QYL-----------EDC--NLLDECEMSEVE------LALKRFRILYPD 488
F+R GCD AV Q L +DC ++DE + E+ L KR+++
Sbjct: 269 FSRAGCDGAVAQCLGARLDLTTDEDKDCIAQIVDEG-VEEIPPEDLDVLGFKRWKL---- 323
Query: 489 AVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
+G AAHHAG LP ++ +E+LF +GL+K VFATETLA GINMPA+T VL
Sbjct: 324 --------ACTRGFAAHHAGMLPAFRHIVEKLFVQGLLKAVFATETLALGINMPAKTVVL 375
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
L K + LT + Q+ GRAGRRGID +G V+V P E L P
Sbjct: 376 ERLVKFNGEAHVDLTPGQFTQLTGRAGRRGIDTQGRAVMVWEPTMDVEAVAGLASTRTYP 435
Query: 609 LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVM 668
LVS F+ Y M +NLL + +N A+ ++E+SF Y +
Sbjct: 436 LVSTFSPGYNMSVNLL---NTIGYAN----------------AKHIIERSFAQYQADKSV 476
Query: 669 LAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEM-ANLQE-ELKAEKRFRTE 726
+ EL K + + L +++ + AID L Y ++ A+L + E KA+K F E
Sbjct: 477 VGKAHELEKASRAVEQLHTQL-EQAIDGPVDEFLE---YMQLRADLTDAERKAKKDFVVE 532
Score = 40.0 bits (92), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 16/198 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPL----GETAA 1012
E++ R + R L + + K F RI +++ E LD T P G+ A
Sbjct: 667 EQLMREERRRDNLQSAVSSARETLGKTFDRILDLLAE---LDYITPGENPTVTDEGQRLA 723
Query: 1013 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 1072
+ E++L +A L+ I +L PA+LA V + V E K + + +T + N
Sbjct: 724 LLHNESDLLIASCLKRGIWDELDPAELAGVVSMTVFENRKEVRGRVGAPTERMATAMNNT 783
Query: 1073 INVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTW-----REMMMDCALDDG 1127
+ + E S +++H + + + F+ + W +G L G
Sbjct: 784 MRIYTELSSD----EQRHKLALSREPEPGFALAMHQWVAGAPLDYALEAAAASGAELTPG 839
Query: 1128 DLARLLRRTIDLLAQIPK 1145
D R RR ID+L Q+ K
Sbjct: 840 DFVRSCRRVIDVLEQVAK 857
>gi|302527220|ref|ZP_07279562.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
AA4]
gi|302436115|gb|EFL07931.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
AA4]
Length = 921
Score = 315 bits (806), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 215/593 (36%), Positives = 299/593 (50%), Gaps = 80/593 (13%)
Query: 117 SSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSS 176
+SP+PS E + R ++ F E S ++F D FQ EA G
Sbjct: 3 TSPSPSPAEAYAASRRRAKHPQLTRFSAE--------SAFEF--DDFQIRGCEALEEGHG 52
Query: 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236
V+V APT +GKT++ E A +A R+ FYTTP+KALSNQK+ + E +G++ VGLLTG
Sbjct: 53 VLVCAPTGAGKTVVGEFAVHLALAEGRKCFYTTPIKALSNQKYADLVERYGNDAVGLLTG 112
Query: 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEE 296
D++IN AQ+++MTTE+LRNMLY + S + ++ +V+DEVHYL+D RG VWEE
Sbjct: 113 DTSINGNAQVVVMTTEVLRNMLY------AGSSAIPELGYVVMDEVHYLADRFRGAVWEE 166
Query: 297 IIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPL 356
+I++ P+ V+++ LSATV+NA+E W+ ++ G T ++ RPVPL + LL L
Sbjct: 167 VILHLPEHVRVVGLSATVSNAEEFGEWLVEVRGDTTVVVDEHRPVPLWQHMLVGNQLLDL 226
Query: 357 LDEKGK-HMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSK 415
+ + +L +N L RK D+ T G +
Sbjct: 227 FAGQNEADPGEQLRINPTLL------------------RKTDDLG-RFAPTFRGPRGGRR 267
Query: 416 NSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV--------------QYL 461
+ R + P +D + L +LPAI FIF+R GCDAAV Q
Sbjct: 268 GAPPRGPRFRPPSRVDVVERLDHAGLLPAIVFIFSRAGCDAAVAQCVRSGLRLNGPDQVE 327
Query: 462 EDCNLLDE--CEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519
E ++DE ++ E +L +L RE L +G A HHAG LP +K +EE
Sbjct: 328 EIRRIVDERTADLPEGDLG-----VLGYWEWRE----ALERGFAGHHAGLLPAFKETVEE 378
Query: 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 579
LF RGLVKVVFATETLA GINMPART VL L K + LT E Q+ GRAGRRGI
Sbjct: 379 LFVRGLVKVVFATETLALGINMPARTVVLERLVKYNGEAHVDLTPGEYTQLTGRAGRRGI 438
Query: 580 DNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDM 639
D GH V+ P + L PL S F Y M +NL+A
Sbjct: 439 DIEGHAVVAWQPGVDPKAVAGLASTRTYPLRSSFRPGYNMAVNLVA-------------- 484
Query: 640 KALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDD 692
Q G + AR L+EQSF + ++ + + ++ T+ IS D
Sbjct: 485 ---QVG--ADAARDLLEQSFAQFQADRSVVGTARRIERNKEALKGYTAAISGD 532
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 19/198 (9%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHE---TRALDINTQVIFPLGETAAA 1013
E+ +RL A +++L +++ S + F RI ++ E R D +V G
Sbjct: 701 ERYQRLSAETEQLERKVAATTHSLARAFDRILRLLGERGYVRPGDGEDRVT-EHGRRLTR 759
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
+ E++L A +R+ + L PA+LAAV ++LV E + EP V
Sbjct: 760 LYSESDLLAAECIRHGVWNGLGPAELAAVVSTLVFEA-------RRDTAGEPRLPGGAVP 812
Query: 1074 NVLDEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALD 1125
E ++EL E +H ++ D+ F+ V WA G + +++ L
Sbjct: 813 GAWQETSRLWVELTEDERRHRLDRTREPDAGFAWPVYRWARGESLEKVLTAAETNGQELS 872
Query: 1126 DGDLARLLRRTIDLLAQI 1143
GD R R+ IDLL QI
Sbjct: 873 AGDFVRWCRQVIDLLDQI 890
>gi|328856615|gb|EGG05735.1| hypothetical protein MELLADRAFT_36552 [Melampsora larici-populina
98AG31]
Length = 1274
Score = 314 bits (805), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 190/527 (36%), Positives = 282/527 (53%), Gaps = 39/527 (7%)
Query: 129 WQRVEKLCNEVKEFGNEMIDVDELASI-----YDFRIDKFQRSSIEAFLRGSSVVVSAPT 183
W V + E+ F + + D+ + AS+ Y F +D FQ+ ++ G SV ++A T
Sbjct: 284 WAHVVDVNQELVNFRDLVPDMAKEASLASLMNYPFELDTFQKEAVYHLEMGDSVFIAAHT 343
Query: 184 SSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINRE 243
S+GKT++AE A + R YT+P+KALSNQKFR+F++TF + VG+LTGD +N +
Sbjct: 344 SAGKTVVAEYAIALAARHMTRCIYTSPIKALSNQKFRDFKQTFDPDTVGILTGDVQVNPD 403
Query: 244 AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK 303
LIMTTEILR+MLY+ ++ DV+ +V DEVHY++D RG VWEE+II P
Sbjct: 404 GSCLIMTTEILRSMLYKGADLIR------DVEFVVFDEVHYINDSERGVVWEEVIIMLPD 457
Query: 304 EVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGK 362
V II LSATV N E A W+G+ K +I++ +RPVPL + L +L+ KG+
Sbjct: 458 HVTIILLSATVPNTKEFADWVGRTKKKDIYVISTPKRPVPLEHFLYANKDLYKILNAKGE 517
Query: 363 HMNRKL--SLNYLQLSTSEVKPY--------------KDGGSRRRNSRKHADMNSN-NIV 405
+ + +L Q+ E + GG++ R SR + N N++
Sbjct: 518 FLGQGFVDALKRAQVKEREAAGMLPLTRMGAAASNRGQRGGAQSRGSRSNTSARGNTNLM 577
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
G ++ + + + L+ +++LP + F F++R C+ + + +
Sbjct: 578 ARGGGRGGGGHNSGRGNQEDRNLWVHLVGLLKKQNLLPVVAFTFSKRRCEDNASSMPNTD 637
Query: 466 LLDECEMSEVELALKR-FRILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ + ++R + L + P I L +GV HH G LPI K +E L
Sbjct: 638 LCSAKEKSEIHVIIERSLKRLNDSDKKLPQILRMRDMLSRGVGVHHGGLLPIVKELVEIL 697
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPAR+ V S + K +L E QM+GRAGRRG+D
Sbjct: 698 FTRGLVKVLFATETFAMGVNMPARSVVFSGIKKHDGHSFRELLPGEYTQMSGRAGRRGLD 757
Query: 581 NRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+ G V++V Q P K+L L SQF +Y M+LNLL
Sbjct: 758 STGVVIIVCTDQPP--DTSTLHKMLLGQPTKLQSQFRLTYNMILNLL 802
>gi|302867438|ref|YP_003836075.1| DSH domain-containing protein [Micromonospora aurantiaca ATCC
27029]
gi|315506152|ref|YP_004085039.1| dsh domain-containing protein [Micromonospora sp. L5]
gi|302570297|gb|ADL46499.1| DSH domain protein [Micromonospora aurantiaca ATCC 27029]
gi|315412771|gb|ADU10888.1| DSH domain protein [Micromonospora sp. L5]
Length = 926
Score = 314 bits (805), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 190/499 (38%), Positives = 260/499 (52%), Gaps = 56/499 (11%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATV--------- 199
+DE + F +D FQR + EA RGS V+V APT +GKT++ E A +
Sbjct: 24 LDEFSLDLGFDLDDFQREACEALERGSGVLVCAPTGAGKTVVGEFAVHLALRGRPGGDAP 83
Query: 200 ANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLY 259
A +R+ FYTTP+KALSNQK+ + + +G VGLLTGD+AIN +A +++MTTE+LRNMLY
Sbjct: 84 ATRRKCFYTTPIKALSNQKYHDLVDRYGAEQVGLLTGDNAINGDAPVVVMTTEVLRNMLY 143
Query: 260 QSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADE 319
+ + L + +V+DEVHYL+D RG VWEE+II+ P+ V ++ LSATV+NA+E
Sbjct: 144 ------AGSATLEGLAYVVMDEVHYLADRFRGGVWEEVIIHLPESVTLVSLSATVSNAEE 197
Query: 320 LAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE 379
A W+ + G+T ++ S RPVPL + + L + + L+ +
Sbjct: 198 FADWLVTVRGETAVVVSEHRPVPLWQHMLVGKRMFDLFHDADAARKHDVHPELLRYT--- 254
Query: 380 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 439
R++ + ++ R P ++D L
Sbjct: 255 -----------RDTMRRLELGEGRSAGP-----GGGRRGPRWRGPMRPDIVD---RLDRE 295
Query: 440 DMLPAIWFIFNRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA--- 494
+LPAI FIF+R GCDAAVQ L E +E+ R++ P
Sbjct: 296 GLLPAILFIFSRAGCDAAVQQCLAAGLRLTSPDERAEIR------RVVESRVTAIPGEDL 349
Query: 495 --------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
+ GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR
Sbjct: 350 SVLGYWEWLDGLERGLAAHHAGMLPAFKEVVEELFVRGLVKAVFATETLALGINMPARCV 409
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606
VL L K + LT E Q+ GRAGRRGID GH V+V +P L
Sbjct: 410 VLERLVKFNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWSPETDPRHVAGLASTRT 469
Query: 607 EPLVSQFTASYGMVLNLLA 625
PL S F SY M +NL+
Sbjct: 470 YPLRSSFRPSYNMAVNLVG 488
>gi|315226572|ref|ZP_07868360.1| helicase [Parascardovia denticolens DSM 10105 = JCM 12538]
gi|315120704|gb|EFT83836.1| helicase [Parascardovia denticolens DSM 10105 = JCM 12538]
Length = 966
Score = 314 bits (805), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 209/580 (36%), Positives = 303/580 (52%), Gaps = 76/580 (13%)
Query: 152 LASIY----DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
LA +Y DF +DKFQR ++ G++V+V+APT +GKT+IA+ A + FY
Sbjct: 98 LAHLYEESLDFDLDKFQRRALTELEAGNNVLVAAPTGAGKTIIADFAIYLARQGNVKAFY 157
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK+ + +G + VGLLTGD +IN EA I++MTTE+LRNMLY+ +++
Sbjct: 158 TTPIKALSNQKYHDLVRIYGPDKVGLLTGDMSINSEADIVVMTTEVLRNMLYEGSTTLTA 217
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
+ ++LDEVHYL+D RG VWEE+II+ PK+V+++ LSATV+N ++ A WI +
Sbjct: 218 ------LRYVILDEVHYLADRMRGQVWEEVIIHLPKDVKVVGLSATVSNVEDFANWIQSV 271
Query: 328 HGKTELITSSRRPVPLTWYFSTKTA------LLPLLDE-----KGKHMNRKLSLNYLQLS 376
GKT LI S +RPVPL + + L L + KG +N +L + QL
Sbjct: 272 RGKTSLIVSEKRPVPLIQEVMLQESDRKEPRLFDLYQDDQEVGKGAKVNPQLIVALDQLE 331
Query: 377 TSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN----------AIRRSQV 426
++R+ A N V ++G+ L N A
Sbjct: 332 RK---------AQRQTFSHQAPGRGKNKVGAYGRKGLKGRHGNRGGGKMPTSSADAGHHT 382
Query: 427 PQ---VIDTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLE-DCNLLDECEMSEVELALKR 481
P+ V+D L L +LP I+FIF+R GCD AV Q ++ +L E E+ +
Sbjct: 383 PRWWAVVDELDFL---GLLPGIYFIFSRNGCDQAVSQCMQAGLSLTSREEAQEIRQIVDS 439
Query: 482 FRILYPDAVREPAIK------GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 535
A + A++ L +G+A HHAG + +++ +E+LF++GL+KVVFATETL
Sbjct: 440 MAYGQLTADDKKALRFADFRHALEEGIAPHHAGMITLYRQIVEKLFEQGLLKVVFATETL 499
Query: 536 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 595
A GINMPAR+ V+ L K L+ E Q+ GRAGRRGID G+ V+V P
Sbjct: 500 ALGINMPARSVVVEKLEKFNGVSHETLSPGEFTQLTGRAGRRGIDPVGYSVIVDHPGFLP 559
Query: 596 EECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV 655
+ L V PL S F ++ M +NLL N D L+ AR+ +
Sbjct: 560 QTALALASKRVYPLHSSFAPTFNMAVNLL---------NRYD----------LQTARRTL 600
Query: 656 EQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAID 695
+ SF + L+AK+ +IQ L D A D
Sbjct: 601 DHSFAQW---EATLSAKNLDAQIQTSRQTLEGYEKDFACD 637
>gi|402220073|gb|EJU00146.1| antiviral helicase [Dacryopinax sp. DJM-731 SS1]
Length = 1258
Score = 314 bits (805), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 194/522 (37%), Positives = 272/522 (52%), Gaps = 72/522 (13%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V ++A Y F +D FQ+ ++ G SV V+A TS+GKT++AE A + R YT
Sbjct: 283 VPDMARKYPFELDTFQKEAVYHLEMGDSVFVAAHTSAGKTVVAEYAIALAAKHMTRAIYT 342
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+F++TF + VG+LTGD IN E LIMTTEILR+MLY+ ++
Sbjct: 343 SPIKALSNQKFRDFKQTFDPSTVGILTGDVQINPEGSCLIMTTEILRSMLYKGADLIR-- 400
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D RG VWEE+II P+ V II LSATV N E A W+G+
Sbjct: 401 ----DVEFVIFDEVHYVNDAERGVVWEEVIIMLPEHVNIILLSATVPNTKEFADWVGRTK 456
Query: 329 GK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
K +I++ +RPVPL Y + ++D KG+ + + YK+ G
Sbjct: 457 KKDIYVISTPKRPVPLEHYLWAGREMHKIVDAKGEFLAQG---------------YKEAG 501
Query: 388 S--RRRN--SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV-------------- 429
RR+ R+ A + V + G Q N+ + PQ
Sbjct: 502 EALRRKQDKEREAAGLPPVQRVGARGGAQRGANARGGQQGRGGPQARGGARGAAPPARGR 561
Query: 430 ----------------IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMS 473
+ + HLR ++LP + F F++R C+ Q L + +L E S
Sbjct: 562 GAMPPRSFQQQDRNLYVHLVGHLRKINLLPVVVFTFSKRRCEENAQTLSNTDLCSAVEKS 621
Query: 474 EV----ELALKRFR---ILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGL 525
EV E AL R + P R ++ LL +G+ HH G LPI K +E LF RGL
Sbjct: 622 EVHVTIEKALTRLKGSDKKLPQIAR---MRDLLSRGIGVHHGGLLPIVKEVVEILFSRGL 678
Query: 526 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 585
VKV+FATET A G+NMPAR+ V S + K +L E QM+GRAGRRG+D G V
Sbjct: 679 VKVLFATETFAMGVNMPARSVVFSGIKKHDGRNFRELLPGEYTQMSGRAGRRGLDPTGVV 738
Query: 586 VLV---QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
++V + P G ++ L SQF +Y M+LNLL
Sbjct: 739 IIVSGDELPDVGTLHI--MMLGQPNKLQSQFRLTYNMILNLL 778
>gi|294786935|ref|ZP_06752189.1| putative ATP-dependent RNA helicase [Parascardovia denticolens
F0305]
gi|294485768|gb|EFG33402.1| putative ATP-dependent RNA helicase [Parascardovia denticolens
F0305]
Length = 866
Score = 314 bits (805), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 213/613 (34%), Positives = 313/613 (51%), Gaps = 83/613 (13%)
Query: 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216
DF +DKFQR ++ G++V+V+APT +GKT+IA+ A + FYTTP+KALSN
Sbjct: 7 DFDLDKFQRRALTELEAGNNVLVAAPTGAGKTIIADFAIYLARQGNVKAFYTTPIKALSN 66
Query: 217 QKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276
QK+ + +G + VGLLTGD +IN EA I++MTTE+LRNMLY+ +++ +
Sbjct: 67 QKYHDLVRIYGPDKVGLLTGDMSINSEADIVVMTTEVLRNMLYEGSTTLTA------LRY 120
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
++LDEVHYL+D RG VWEE+II+ PK+V+++ LSATV+N ++ A WI + GKT LI S
Sbjct: 121 VILDEVHYLADRMRGQVWEEVIIHLPKDVKVVGLSATVSNVEDFANWIQSVRGKTSLIVS 180
Query: 337 SRRPVPLTWYFSTKTA------LLPLLDE-----KGKHMNRKLSLNYLQLSTSEVKPYKD 385
+RPVPL + + L L + KG +N +L + QL
Sbjct: 181 EKRPVPLIQEVMLQESDRKEPRLFDLYQDDQEVGKGAKVNPQLIVALDQLERK------- 233
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN----------AIRRSQVPQ---VIDT 432
++R+ A N V ++G+ L N A P+ V+D
Sbjct: 234 --AQRQTFSHQAPGRGKNKVGAYGRKGLKGRHGNRGGGKMPTSSADAGHHTPRWWAVVDE 291
Query: 433 LWHLRSRDMLPAIWFIFNRRGCDAAV-QYLE-DCNLLDECEMSEVELALKRFRILYPDAV 490
L L +LP I+FIF+R GCD AV Q ++ +L E E+ + A
Sbjct: 292 LDFL---GLLPGIYFIFSRNGCDQAVSQCMQAGLSLTSREEAQEIRQIVDSMAYGQLTAD 348
Query: 491 REPAIK------GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 544
+ A++ L +G+A HHAG + +++ +E+LF++GL+KVVFATETLA GINMPAR
Sbjct: 349 DKKALRFADFRHALEEGIAPHHAGMITLYRQIVEKLFEQGLLKVVFATETLALGINMPAR 408
Query: 545 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 604
+ V+ L K L+ E Q+ GRAGRRGID G+ V+V P + L
Sbjct: 409 SVVVEKLEKFNGVSHETLSPGEFTQLTGRAGRRGIDPVGYSVIVDHPGFLPQTALALASK 468
Query: 605 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 664
V PL S F ++ M +NLL N D L+ AR+ ++ SF +
Sbjct: 469 RVYPLHSSFAPTFNMAVNLL---------NRYD----------LQTARRTLDHSFAQW-- 507
Query: 665 SNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFR 724
L+AK+ +IQ L D A D Y + A+ A
Sbjct: 508 -EATLSAKNLDAQIQTSRQTLEGYEKDFACD-----------YGDFADFMRIRLALTDLE 555
Query: 725 TELRRRMELKRFS 737
RR+++ +RF+
Sbjct: 556 RSGRRQLKHQRFA 568
>gi|375095518|ref|ZP_09741783.1| superfamily II RNA helicase [Saccharomonospora marina XMU15]
gi|374656251|gb|EHR51084.1| superfamily II RNA helicase [Saccharomonospora marina XMU15]
Length = 919
Score = 314 bits (805), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 201/519 (38%), Positives = 272/519 (52%), Gaps = 64/519 (12%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F D FQ EA G V+V APT +GKT++ E A +A R+ FYTTP+KALSNQ
Sbjct: 34 FDFDDFQLRGCEALEDGHGVLVCAPTGAGKTVVGEFAVHLALAEGRKCFYTTPIKALSNQ 93
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + +G VGLLTGD+AIN AQI++MTTE+LRNMLY + + L D+ +
Sbjct: 94 KYTDLTARYGPELVGLLTGDTAINGNAQIVVMTTEVLRNMLY------AGSTTLRDLGYV 147
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DE+HYL+D RG VWEE+I++ P+ V+++ LSATV+NA+E W+ + G T ++
Sbjct: 148 VMDEIHYLADRFRGAVWEEVILHLPEYVRLVGLSATVSNAEEFGEWLIAVRGDTTVVVDE 207
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNR---KLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
RPVPL + LL L G+H + +++ N L+ + + G R
Sbjct: 208 HRPVPLWQHMMVGGRLLDLF--AGEHRDSGEPRINPNLLRKVEDAARMHAPAGLR----- 260
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
G + + R + P I+ + L +LPAI FIF+R GC
Sbjct: 261 --------------GPRGPRRGQPPRLPRYRPPSRIEVVDRLDRAGLLPAIVFIFSRAGC 306
Query: 455 DAAV-QYLEDCNLLDECEMSE----------VELALKRFRILYPDAVREPAIKGLLKGVA 503
DAAV Q + L+ E +E EL +L RE GL +G+A
Sbjct: 307 DAAVAQCVRSGLRLNTPEETEQVRRIVAERTAELPETDLAVLGYWEWRE----GLEQGIA 362
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
AHHAG LP +K +EELF +GLVK VFATETLA GINMPART VL L K + LT
Sbjct: 363 AHHAGLLPAFKETVEELFVQGLVKAVFATETLALGINMPARTVVLERLVKYNGEAHVDLT 422
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E Q+ GRAGRRGID GH V++ P + L PL S F Y M +NL
Sbjct: 423 PGEYTQLTGRAGRRGIDVEGHAVVLWQPGVDPRQVAGLASTRTYPLRSSFRPGYNMAINL 482
Query: 624 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
+ Q G + +AR+L+EQSF +
Sbjct: 483 VG-----------------QFGAA--QARELLEQSFAQF 502
Score = 44.7 bits (104), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 9/192 (4%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ +RL A + +L +++ S + F RI +++ E L + G + +
Sbjct: 701 ERYQRLSAENTQLERKVAATTHSLARAFDRIRSLLTERGYLGEGGNEVTEHGRLLSRLYS 760
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E++L A +R+++ L +LAAV ++LV E K + + PS V
Sbjct: 761 ESDLLAAECIRHRVWNGLTAPELAAVVSALVYEARK----DSAAEPKLPSGAVPGAWQQT 816
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGDLAR 1131
+ + ++ + +H ++ D+ F+ V WA G + ++ L GD R
Sbjct: 817 VKLWTDLVDDERRHRLDRTREPDAGFAWPVYRWARGESLERVLTAADANGQELSAGDFVR 876
Query: 1132 LLRRTIDLLAQI 1143
R+ IDLL QI
Sbjct: 877 WSRQVIDLLDQI 888
>gi|145594787|ref|YP_001159084.1| DSH domain-containing protein [Salinispora tropica CNB-440]
gi|145304124|gb|ABP54706.1| DSH domain protein [Salinispora tropica CNB-440]
Length = 935
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 196/534 (36%), Positives = 268/534 (50%), Gaps = 74/534 (13%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAA-------AVATVAN 201
+DE A +D FQR + +A RGS V+V APT +GKT++ E A +
Sbjct: 37 LDEFALDLGVDLDDFQREACQALERGSGVLVCAPTGAGKTVVGEFAVHLALRGGTSADTG 96
Query: 202 QRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS 261
+R+ FYTTP+KALSNQK+ + + G + VGLLTGD+AIN +A +++MTTE+LRNMLY
Sbjct: 97 RRKCFYTTPIKALSNQKYHDLVDRHGADQVGLLTGDNAINGDAPVVVMTTEVLRNMLY-- 154
Query: 262 VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELA 321
+ + L + +V+DEVHYL+D RG VWEE+II+ P V ++ LSATV+NA+E A
Sbjct: 155 ----AGSATLEGLAYVVMDEVHYLADRFRGGVWEEVIIHLPASVTLVSLSATVSNAEEFA 210
Query: 322 GWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
W+ + G+TE++ S RPVPL + + L + + L+ + ++
Sbjct: 211 DWLVTVRGETEVVVSEHRPVPLWQHMLVGRRMFDLFHDADAARKHDVHPELLRYTRDTLR 270
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
+ S + + +R P ++D L +
Sbjct: 271 ----------------RLESGEGRGAGPGGRRGPRWRGPMR----PDIVD---RLDREGL 307
Query: 442 LPAIWFIFNRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA----- 494
LPAI FIF+R GCDAAVQ L E +E+ R++ P
Sbjct: 308 LPAILFIFSRAGCDAAVQQCLAAGLRLTGPEERAEIR------RVVESRITTIPGEDLSV 361
Query: 495 ------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
+ GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR VL
Sbjct: 362 LGYWDWLDGLERGLAAHHAGMLPAFKEVVEELFVRGLVKAVFATETLALGINMPARCVVL 421
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
L K + LT E Q+ GRAGRRGID GH V+V +P L P
Sbjct: 422 ERLVKYNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWSPETDPRHVAGLASTRTYP 481
Query: 609 LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
L S F SY M +NL+ E AR L+E SF +
Sbjct: 482 LRSSFRPSYNMAVNLVGSVGA-------------------EPARALLESSFAQF 516
>gi|296117879|ref|ZP_06836462.1| HelY [Corynebacterium ammoniagenes DSM 20306]
gi|295969110|gb|EFG82352.1| HelY [Corynebacterium ammoniagenes DSM 20306]
Length = 935
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 188/492 (38%), Positives = 269/492 (54%), Gaps = 33/492 (6%)
Query: 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209
+E S +D FQ + EA G V+V APT +GKT++ E A ++ + FYTT
Sbjct: 7 EEFRSKLSHPLDDFQIAGCEAVADGHGVLVCAPTGAGKTIVGEFAVSLALSQGTKCFYTT 66
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSES 269
P+KALSNQK+ + GD VGLLTGD +IN A+I++MTTE+LRNM+Y +
Sbjct: 67 PIKALSNQKYHDLVAEHGDEAVGLLTGDVSINGGAEIVVMTTEVLRNMIY------ADSP 120
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L + +V+DE+H+L+D SRG VWEE+I+ + V II LSATV+N++E W+ + G
Sbjct: 121 ALHRLSHVVMDEIHFLADASRGAVWEEVILNLDESVSIIGLSATVSNSEEFGDWLSTVRG 180
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDE-KGKHMNRKLSLNYLQL---STSEVKP-YK 384
T+++ + RPVPL + L PL + G +N +L +L S+ E + YK
Sbjct: 181 DTKIVVTEHRPVPLDQWMMLGRKLFPLFEPASGGQVNSELERKIARLEAGSSDEGREDYK 240
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
G R +R H+ +N G Q ++ + R V +V L+ ++MLPA
Sbjct: 241 SGKGFRARARHHSREPRDNHGGRSGA-QRPQDRYRPLGRPDVLKV------LQGQNMLPA 293
Query: 445 IWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVE---------LALKRFRILYPDAVREP 493
I FIF+R GC+ A+ Q L L E E E++ + + ++L R+
Sbjct: 294 ITFIFSRAGCEGALYQCLRSRMTLTSEEEAEEIKDIVDAGVEGIPEEDLQVLNFRQWRQ- 352
Query: 494 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
L +G AAHHAG LP ++ +E+LF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 353 ---ALSRGFAAHHAGMLPAFRHIVEDLFVKGLVRAVFATETLALGINMPARTVVLEKLIK 409
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQF 613
+ LT + Q+ GRAGRRGID G+ V++ P + L PL+S F
Sbjct: 410 FNGEAHVDLTPGQYTQLTGRAGRRGIDTLGNAVVMWAPAMDPRQVAGLASTRTYPLISTF 469
Query: 614 TASYGMVLNLLA 625
Y M +NLL
Sbjct: 470 QPGYNMAINLLG 481
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 27/264 (10%)
Query: 908 VLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSK 967
+L + H E R ++A L +K+AR E +E KK+ TV+ + + + R
Sbjct: 687 ILRDAIRLHPVHEWPATDREQLAGLAQKLARRE--RELKKLTTTVERATDTLGKTFERIV 744
Query: 968 RLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLR 1027
L +++ +E G E T VI GE A I + +L +A L+
Sbjct: 745 DLLAQMDYVEFEGLGE---------------DRTPVITDEGERLALIHNDCDLLVAQCLK 789
Query: 1028 NKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQ 1087
+I DL PA+LA V + E K + S + + + +N + + +
Sbjct: 790 RRIWDDLDPAELAGVVSMCSFENRK----ETAGSPDAATDRMADAMNATLRIHAELITDE 845
Query: 1088 EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQ 1142
+ H + + D+ F+ + WA+G M A L GD R R+ IDLL Q
Sbjct: 846 QLHRLPLTRQPDAGFALALHQWAAGAPLGYCMSAAAESGAELTPGDFVRQCRQAIDLLQQ 905
Query: 1143 IPKLPDVDQRLQKNAVDASNVMDR 1166
+ K D ++ NA A + + R
Sbjct: 906 VAKTAYTDD-VRANARRAVDAIQR 928
>gi|383808204|ref|ZP_09963756.1| type III restriction enzyme, res subunit / helicase C-terminal
domain / DSHCT domain multi-domain protein [Rothia aeria
F0474]
gi|383449162|gb|EID52107.1| type III restriction enzyme, res subunit / helicase C-terminal
domain / DSHCT domain multi-domain protein [Rothia aeria
F0474]
Length = 966
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 198/544 (36%), Positives = 274/544 (50%), Gaps = 72/544 (13%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ+S+ + G +V+V+APT +GKT++ E + + + FYTTP+KALSNQ
Sbjct: 36 FPLDDFQQSACRSVESGRAVLVAAPTGAGKTVVGEFGIYLALRKRLKAFYTTPIKALSNQ 95
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ +F +G+ VGLLTGD++IN EA +L+MTTE+LRNMLY + L + +
Sbjct: 96 KYHDFVREYGEETVGLLTGDTSINAEAPVLVMTTEVLRNMLY------ADSPTLEGLGYV 149
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
+LDEVHYL+D RG VWEE II+ P+ V +I LSATV+N +E W+ + G T++I S
Sbjct: 150 ILDEVHYLADRFRGAVWEEAIIHLPEHVTVISLSATVSNVEEFGAWLDTVRGGTDVIVSE 209
Query: 338 RRPVPLTWYFSTKTALLPLL-----------------------DEKGKHMNRKLSLNYLQ 374
RPVPL + ++ L DE +L+ Q
Sbjct: 210 HRPVPLWQHMLVGNQIVDLFTPDPGEKSASGARRATKRPRKDADEHTAPAGMRLNPQLKQ 269
Query: 375 L-----STSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 429
L + + R R +RKH + H N + R S+ P++
Sbjct: 270 LRPGYGADRGYRGRGGKRERFRRTRKHHSTAQTFEDSRRTPHAAQDNPLRPHRISR-PEM 328
Query: 430 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL---DECEMS--------EVELA 478
+ T L +LPAI FIF+R GCD AV D +L+ DE + + L
Sbjct: 329 VRT---LDKAGLLPAICFIFSRAGCDGAVTQCIDADLMLTTDEQQRTIRAYIAEATAHLD 385
Query: 479 LKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 538
+ L RE GLL+G+AAHHAG LP++K +E LF GL+K+VFATETLA G
Sbjct: 386 TRDLNTLGYYEWRE----GLLRGIAAHHAGMLPLFKETVETLFTTGLIKLVFATETLALG 441
Query: 539 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 598
INMPART +L L+K + +T E Q+ GRAGRRGID GH V+ P A
Sbjct: 442 INMPARTVILEKLTKYNGETHVDITPGEYTQLTGRAGRRGIDIEGHAVIAWRPNTTAAHV 501
Query: 599 CKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQS 658
L PL S F +Y M NL+A E RK++E S
Sbjct: 502 ASLASTRTYPLNSSFRPTYNMAANLIAAYGA-------------------ERTRKILESS 542
Query: 659 FGNY 662
F +
Sbjct: 543 FAQF 546
>gi|428204590|ref|YP_007083179.1| superfamily II RNA helicase [Pleurocapsa sp. PCC 7327]
gi|427982022|gb|AFY79622.1| superfamily II RNA helicase [Pleurocapsa sp. PCC 7327]
Length = 987
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 232/704 (32%), Positives = 334/704 (47%), Gaps = 136/704 (19%)
Query: 490 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
+R ++ L +G+AAHHAG LP+WK +E+LF++GLVKVVFAT TL+AGINMPART V+S
Sbjct: 396 IRFDQLEPLTRGIAAHHAGILPVWKELVEQLFEQGLVKVVFATATLSAGINMPARTTVIS 455
Query: 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
+LS+RT G LT +E Q+AGRAGRRG D G+VV VQTP+EGA+E L A EPL
Sbjct: 456 ALSRRTDDGHSMLTPSEFLQLAGRAGRRGKDEVGYVVTVQTPFEGAKEAAYLATAKAEPL 515
Query: 610 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVML 669
S FT SYGMVLNLL +LEEA++L+E+SF Y+ + +
Sbjct: 516 KSCFTPSYGMVLNLL-------------------QKHTLEEAKELLERSFAEYLAQSKLA 556
Query: 670 AAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRR 729
K + ++ E + E++ L + + A L+E LK E+R L++
Sbjct: 557 PEKKAIAELTTELAKIDVELAG----------LDDRDFASYAKLKERLKEEERLLKILQQ 606
Query: 730 RMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMAS 789
+ E + + L + G L L ++ K + V + AV++ K
Sbjct: 607 QAEANKKHEIASRLAELSPGSL--LAIKGKHVK-VASPLSAVFVAKIP------------ 651
Query: 790 INDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQ 849
+G D V LG DN WY T I + P + L Q
Sbjct: 652 ------------GSGQAPD--------LVCLGEDNRWYIVTLADITDI----LPAI-LPQ 686
Query: 850 GDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVL 909
G L + LL+ ++ G W
Sbjct: 687 GAQLSVPELEALLE--------VSSYHHCGPW---------------------------- 710
Query: 910 HMSFEYHDAVENYKEQR--TKVARLKKKIARTEGFKEYKKIVDTVKFTEEK--IKRLKAR 965
H E A+ +R A + IA+ E + +D ++K + LK
Sbjct: 711 HKGDEKTAAIAQQITRRLDATAATAPEVIAQQERIDRVRANLDNHPLQQQKNPARLLKLH 770
Query: 966 SKRLTKRIEQIEPSG-------------WKEFLRISNVIHETRALDINTQVIFPLGETAA 1012
+RLT R EQ+ S W++FL + ++ E RALD V PLG+ AA
Sbjct: 771 QRRLTIR-EQLYRSHAKYQNQQAHKSYYWQDFLNLIEILREFRALD--GLVPTPLGQAAA 827
Query: 1013 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 1072
IRGENELWL + L + L+P QLAA ++L++E ++ W N Y PS V+
Sbjct: 828 TIRGENELWLGLALMSGAFDRLEPHQLAAAMSALITEPLRPDTWTN----YPPSQEVLEA 883
Query: 1073 INV-------LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALD 1125
L E R + Q ++ + IP LD+Q G++E W G+ W E+ + +LD
Sbjct: 884 FRKTESQEIGLREIRRQLYQAQARYDIAIPVWLDTQLMGLIEQWVLGIDWNELCDNTSLD 943
Query: 1126 DGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
+GD+ RLLRRTIDLL QIP++P V L+ A A ++M R P+
Sbjct: 944 EGDIVRLLRRTIDLLWQIPQIPGVPISLKSQARVAVSMMKRFPV 987
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 150/359 (41%), Positives = 197/359 (54%), Gaps = 68/359 (18%)
Query: 139 VKE-FGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVA 197
VKE N +++ EL + F++D FQ+ +I A G SVVV APT SGKTLI E A
Sbjct: 11 VKERLSNPKLNLKEL---FPFKLDDFQQKAIAALDAGKSVVVCAPTGSGKTLIGEYAIYR 67
Query: 198 TVANQRRIFYTTPLKALSNQKFREFRETFGD-------NNVGLLTGDSAINREAQILIMT 250
++ +R+FYTTPLKALSNQKFR+F+E FG VGL+TGD N A I IMT
Sbjct: 68 ALSRGKRVFYTTPLKALSNQKFRDFQERFGSWGDGEATEKVGLITGDVVYNPNAPIAIMT 127
Query: 251 TEILRNMLYQS-VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIIC 309
TEI RN+LY++ +G V + L +V+ +VLDE HY+SD RGTVWEE IIYCP +Q++
Sbjct: 128 TEIFRNILYETPIGQVG--TSLENVESVVLDECHYISDRGRGTVWEESIIYCPPTIQLVA 185
Query: 310 LSATVANADELAGWIGQI--------HGK-----TELITSSRRPVPLTWYFSTKTALLPL 356
LSAT+ N +EL WI ++ +GK LI S RPVPL ++FSTK L PL
Sbjct: 186 LSATIGNPEELTDWIERVRLAAGSKENGKQVIYHCALIDSDYRPVPLRFFFSTKEKLYPL 245
Query: 357 LDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKN 416
L+ K +N P S R R+ + +I+T Q
Sbjct: 246 LNSKQTAIN----------------PSLKSKSPREEKRRRRREDCPSILTVVEQ------ 283
Query: 417 SINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV 475
L RD+LPAI+ IF+RRGCD AV+ LED L++E E +
Sbjct: 284 -------------------LVERDLLPAIYAIFSRRGCDQAVRELEDLVLVNESEAKAI 323
>gi|213408937|ref|XP_002175239.1| antiviral helicase SKI2 [Schizosaccharomyces japonicus yFS275]
gi|212003286|gb|EEB08946.1| antiviral helicase SKI2 [Schizosaccharomyces japonicus yFS275]
Length = 1189
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 189/489 (38%), Positives = 270/489 (55%), Gaps = 25/489 (5%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V E+A Y F +D FQ+ ++ G SV V+A TS+GKT++AE A + R YT
Sbjct: 240 VPEMAIEYPFELDNFQKEAVYHLEMGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRAIYT 299
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+F+ F D VG+LTGD +N +A LIMTTEILR+MLY+ ++
Sbjct: 300 SPIKALSNQKFRDFKTKFED--VGILTGDVQVNPDASCLIMTTEILRSMLYRGSDLIR-- 355
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D+ RG VWEE+II P V +I LSATV N E A W+G+
Sbjct: 356 ----DVEFVIFDEVHYVNDLERGVVWEEVIIMLPAHVTLILLSATVPNTKEFASWVGRTK 411
Query: 329 GKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK--D 385
K +I++S+RPVPL Y + ++D+ NR LS Y + S + P K
Sbjct: 412 KKNIYVISTSKRPVPLEHYLYVNQNMYKIVDQN----NRFLSDGYKEASLALKGPEKVIP 467
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLS----KNSINAIRRSQVPQVIDTLWHLRSRDM 441
+ +N + Q++ + ++ A R V + + HL+ +++
Sbjct: 468 PAQKNQNGTRGRGNPRGRGNQRGRGSQVNLMRGRGNVRAGERRDVNVWVHLVGHLQKQNL 527
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAI----K 496
LP I F+F+++ C+ V L + L + E SEV + + K L + P I
Sbjct: 528 LPVIVFVFSKKRCEEYVDTLANRTLNTQKEKSEVHIVIEKAIARLKKEDRNLPQIGRMRD 587
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+A HH G LPI K +E LFQRGLVKV+FATET A G+NMPA++ V S K
Sbjct: 588 MLSRGLAVHHGGLLPIVKEIVELLFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDG 647
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTA 615
L E Q +GRAGRRG+D+ G V +LV++ ++ LVSQF
Sbjct: 648 RSFRDLLPGEYTQCSGRAGRRGLDSTGTVIILVRSDIPDTASLHHMILGTPTKLVSQFRL 707
Query: 616 SYGMVLNLL 624
+Y MVLNLL
Sbjct: 708 TYNMVLNLL 716
>gi|410866605|ref|YP_006981216.1| Superfamily II RNA helicase [Propionibacterium acidipropionici ATCC
4875]
gi|410823246|gb|AFV89861.1| Superfamily II RNA helicase [Propionibacterium acidipropionici ATCC
4875]
Length = 919
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 192/498 (38%), Positives = 270/498 (54%), Gaps = 43/498 (8%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D AS Y F +D +Q + G+ V+V+APT +GKT++ E A + + R+ FYT
Sbjct: 5 LDRFASGYSFGLDDYQLEACHHLDDGAGVLVAAPTGAGKTVVGEYATFLALESGRKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + E +G VGLLTGD ++N EA +++MTTE+LRNM+Y +
Sbjct: 65 TPIKALSNQKYHDLVERYGAEEVGLLTGDVSVNSEAPLVVMTTEVLRNMIY------AGS 118
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L + +V+DEVHYL+D RG VWEE+I+ V+++CLSATV+NA+E W+ ++
Sbjct: 119 RTLEGLGWMVMDEVHYLADRFRGPVWEEVILGLADSVRLVCLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLL--DEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
G ++ S RRPVPLT + + ++ L D G +N L Q + S+ +
Sbjct: 179 GDIRVVVSERRPVPLTQHVALAKRIVDLFAPDRPGT-VNPDLLQVARQEARSQRDDGRRP 237
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQ------HQLSKNSINAIRRSQVPQVIDTLWHLRSRD 440
R R+ S + Q H+ +NS + RSQV + LR
Sbjct: 238 RGRSGKGRRTVSYGSGRFGGASAQRFERDDHRAPRNSPS---RSQVVRA------LRRAH 288
Query: 441 MLPAIWFIFNRRGCDAAVQYLEDCNLL----DE----CEMSEVELALKRFRILYPDAVRE 492
+LPAI F+F+R+GCDAAV L +++ +E CE++E R DA R
Sbjct: 289 LLPAIIFVFSRQGCDAAVSQLMSSDVVLTSTEEARRLCEIAE------RHGAALTDAERR 342
Query: 493 PA-----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
+ +GVAAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART V
Sbjct: 343 ALGWDRFVSAFERGVAAHHAGLLPVVKAVVEEGFVNGLLKVVVATETLALGINMPARTVV 402
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
+ L K +T E Q+ GRAGRRGID GH V+ P L
Sbjct: 403 IERLVKYNGQTHADITPGEYTQLTGRAGRRGIDVEGHAVVCWQPGMDPRAVAGLASRRTY 462
Query: 608 PLVSQFTASYGMVLNLLA 625
PL S FT +Y M +NL+
Sbjct: 463 PLRSAFTPTYNMAVNLVG 480
Score = 47.8 bits (112), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 3/172 (1%)
Query: 984 FLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVC 1043
F RI V+ L+ + G + I E +L A + +L L PAQLAAV
Sbjct: 730 FDRICLVLEALGYLEPGGLRVSDSGRVLSRIYSELDLVTAEAIAEGVLDGLDPAQLAAVL 789
Query: 1044 ASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFS 1103
++L+ E + ++ + P ++ L R+ L+ H +E P LD+ F+
Sbjct: 790 STLIFES-RPADRRHQYGHWLPDPACEESVSRLRAVRARVGRLERDHRLERPRDLDTGFA 848
Query: 1104 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQK 1155
+ WASG + +++ GD R +R+ DL QI VD+ L +
Sbjct: 849 EIAYQWASGAAL-DTVLEEGSSAGDFVRQMRQLADLAGQIAGA-GVDEELAR 898
>gi|443673064|ref|ZP_21138136.1| putative helicase [Rhodococcus sp. AW25M09]
gi|443414378|emb|CCQ16474.1| putative helicase [Rhodococcus sp. AW25M09]
Length = 924
Score = 313 bits (803), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 208/576 (36%), Positives = 288/576 (50%), Gaps = 64/576 (11%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D+FQ + A RG V+V APT +GKT+I E A +A R+ FYTTP+KALSNQ
Sbjct: 26 FPLDRFQVDACTALERGHGVLVCAPTGAGKTVIGEFAVHLALAAGRKCFYTTPIKALSNQ 85
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
KF E +G + VGLLTGDS+IN +A I+IMTTE+LRNMLY +S L + +
Sbjct: 86 KFAELTARYGRDTVGLLTGDSSINPDAPIVIMTTEVLRNMLY------ASSDALRGLSHV 139
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVHYL+D RG VWEE+I++ +V+++ LSATV+NA+E W+ + G T ++
Sbjct: 140 VMDEVHYLADRFRGAVWEEVILHLSDDVRLVSLSATVSNAEEFGAWMSTVRGDTSVVVDE 199
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RPVPL+ + L L D + + + + + VK + S R H+
Sbjct: 200 NRPVPLSQHIMVGRRLFDLFDTRAQSPDGSQKIVVDRELVRHVKQRQSLDSMDRWHAPHS 259
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAA 457
+ N R P VI L +LPAI FIF+R GCD A
Sbjct: 260 RGRGGRGGGGGRGGGQGGGANN--RPLARPDVIA---KLDEEGLLPAITFIFSRAGCDGA 314
Query: 458 V-QYLEDCNLLDECEMSE----------VELALKRFRIL----YPDAVREPAIKGLLKGV 502
+ Q + +L E +E EL + +L + DA L +G
Sbjct: 315 LTQCMRSRLVLTTPEQAEEIRYIVEKHTSELPREDLEVLGFWEWRDA--------LERGF 366
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
AAHHAG LP+++ +EELF +GLV+ VFATETLA GINMPART VL L K +L
Sbjct: 367 AAHHAGMLPVFRHTVEELFVKGLVRAVFATETLALGINMPARTVVLEKLVKFNGETHAEL 426
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
T E Q+ GRAGRRGID GH V++ P E L PL S F +Y M +N
Sbjct: 427 TPGEYTQLTGRAGRRGIDVEGHAVVLWQPGTEPTEVAGLASTRTFPLRSSFAPAYNMSIN 486
Query: 623 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKET 682
L+ Q G + ++R L+E+SF + ++ + K +
Sbjct: 487 LIE-----------------QFGAA--DSRLLLERSFAQFQADRSVVGMVRGIEKNMQTL 527
Query: 683 DVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELK 718
D L + + + Y E A L+E LK
Sbjct: 528 DALGARLGG-----------PDGEYFEYARLRERLK 552
>gi|375101143|ref|ZP_09747406.1| superfamily II RNA helicase [Saccharomonospora cyanea NA-134]
gi|374661875|gb|EHR61753.1| superfamily II RNA helicase [Saccharomonospora cyanea NA-134]
Length = 918
Score = 313 bits (803), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 201/518 (38%), Positives = 274/518 (52%), Gaps = 64/518 (12%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F D FQ EA G V+V APT +GKT++ E A +A R+ FYTTP+KALSNQ
Sbjct: 35 FDFDDFQIQGCEALEDGHGVLVCAPTGAGKTVVGEFAVHLALAEGRKCFYTTPIKALSNQ 94
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + E +G + VGLLTGD+++N AQI++MTTE+LRNMLY ++ + L D+ +
Sbjct: 95 KYGDLVERYGPDAVGLLTGDTSVNGSAQIVVMTTEVLRNMLY------ANSAALDDLGYV 148
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVHYL+D RG VWEE+I++ P V+++ LSATV+NA+E W+ ++ G T ++
Sbjct: 149 VMDEVHYLADRFRGAVWEEVILHLPAYVRVVGLSATVSNAEEFGEWLVEVRGDTTVVVDE 208
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RPVPL + +L L +L+ ++ +D +R HA
Sbjct: 209 HRPVPLWQHMFVGGRMLDLFAADAADTGEA------KLNPQLLRRVED------TARMHA 256
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAA 457
+ + + R + P + + L + +LPAI FIF+R GCDAA
Sbjct: 257 PAGLRG--------RGRRGAPYRGPRYRPPSRTEVVDRLDAAGLLPAIVFIFSRAGCDAA 308
Query: 458 V-QYLEDCNLLDECEMSEVELALKRFRILYPDAVREP----AIKG-------LLKGVAAH 505
V Q + L+ E EVE + RI+ P A+ G L +G+AAH
Sbjct: 309 VAQCVRSGLRLNTPE--EVE---QVRRIVDERTADLPQNDLAVLGYWEWREALEQGIAAH 363
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP +K +EELF RGLVKVVFATETLA GINMPART VL L K + LT
Sbjct: 364 HAGLLPAFKETVEELFVRGLVKVVFATETLALGINMPARTVVLERLVKYNGEAHVDLTPG 423
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E Q+ GRAGRRGID GH V+V P + L PL S F Y M +NL+
Sbjct: 424 EYTQLTGRAGRRGIDVEGHAVVVWQPGVDPRQVAGLASTRTYPLRSSFRPGYNMAVNLV- 482
Query: 626 GAKVMHLSNESDDMKALQAGR-SLEEARKLVEQSFGNY 662
GR +AR+L+EQSF +
Sbjct: 483 -------------------GRFGSAKARELLEQSFAQF 501
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 9/215 (4%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL+A +++L +++ S + F RI ++ E LD + G A +
Sbjct: 700 ERYLRLEAETEQLKRKVAATTHSLARAFDRIRGLLSERGYLDDGGDTVTEHGRLLARLYS 759
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E++L A +R ++ L PA+LAAV ++LV E + + + PS V
Sbjct: 760 ESDLLAAECIRQRLWHGLAPAELAAVVSTLVYEARR----DSPAESKLPSGPVSEAWQET 815
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGDLAR 1131
+ ++ + +H ++ D+ F+ V WA G + +++ L GD R
Sbjct: 816 VRVWTDLVDDERRHRLDRTREPDAGFAWPVYRWARGESLEKVLTTAEVNGQELSAGDFVR 875
Query: 1132 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
R+ +DLL QI + + + A AS ++ R
Sbjct: 876 WSRQVVDLLDQIKDVLGREHPVGGAAGKASRLLRR 910
>gi|306822741|ref|ZP_07456119.1| helicase [Bifidobacterium dentium ATCC 27679]
gi|309801006|ref|ZP_07695138.1| DEAD/DEAH box helicase [Bifidobacterium dentium JCVIHMP022]
gi|304554286|gb|EFM42195.1| helicase [Bifidobacterium dentium ATCC 27679]
gi|308222542|gb|EFO78822.1| DEAD/DEAH box helicase [Bifidobacterium dentium JCVIHMP022]
Length = 868
Score = 313 bits (803), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 224/645 (34%), Positives = 324/645 (50%), Gaps = 99/645 (15%)
Query: 119 PAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVV 178
P+PS R Q K F M F +D FQ + EA S+V+
Sbjct: 23 PSPSQRYAMFKQTQRKQGMAATRFAQSM----------PFELDDFQMEANEALEADSNVL 72
Query: 179 VSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDS 238
V+APT +GKT++A+ A + FYTTP+KALSNQK+ + + +G + VGLLTGD+
Sbjct: 73 VAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKALSNQKYHDLVDQYGQDRVGLLTGDT 132
Query: 239 AINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII 298
+IN EA I++MTTE+LRNMLY+ + + + ++LDEVHYL+D RG VWEE+I
Sbjct: 133 SINSEADIVVMTTEVLRNMLYEHSMTLEA------LRYVILDEVHYLADRFRGPVWEEVI 186
Query: 299 IYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF------STKTA 352
I+ P+ V+II LSATV+N ++ + WI + G T+LI S +RPVPL + T+
Sbjct: 187 IHLPQSVKIIGLSATVSNVEDFSNWIVSVRGDTKLIVSEKRPVPLEQHVLVQADDRTEPE 246
Query: 353 LLPLLDEKGKHMNRKLSLNYL---QLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFG 409
L+ L + H ++ + LN +L + + + G++R RK +
Sbjct: 247 LIDLY-RRDAHGDQTVKLNAQLLNRLDQLDRQAARRQGAQRPERRKGKGKGPWH------ 299
Query: 410 QHQLSKNSINAIRRSQVPQ---VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL 466
+ S + + R P+ V+D L L DMLP I+FIF+R GCD AV+ + L
Sbjct: 300 ----DRESSHKVER-HTPKRWAVVDELNFL---DMLPGIYFIFSRNGCDQAVEQCINAGL 351
Query: 467 --------------LDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPI 512
+D EM E +L+ + + L+ R L +G A HHAG + +
Sbjct: 352 ELTSNGEVRRIRRIVD--EMIEGQLSQEDLKALHFSQFR----FALEEGFAPHHAGMIAL 405
Query: 513 WKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAG 572
++ +E LF+ GLVKVVFATETLA GINMPAR V+ L K +G + LT E Q+ G
Sbjct: 406 FRQIVERLFEEGLVKVVFATETLALGINMPARCVVVEKLEKYDGTGHVGLTPGEFTQLTG 465
Query: 573 RAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 628
RAGRRGID GH V+V P A K ++ PL S F ++ M +NLL
Sbjct: 466 RAGRRGIDTIGHAVVVDHRGFVPATAAALSSKRVY----PLHSSFRPTFNMAVNLL---- 517
Query: 629 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD----V 684
N SD E AR ++ SF + + + ++ ++K +
Sbjct: 518 -----NSSD----------YETARITLDHSFAQWEANESAWQLEAQMDTLKKALEGYEHA 562
Query: 685 LTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRR 729
T E D A + R LSE E L+ E+ FRT+ R
Sbjct: 563 FTCEFGDFADFMRLRMRLSELEKNERRRLKHEV-----FRTQSER 602
>gi|456385877|gb|EMF51430.1| helY protein [Streptomyces bottropensis ATCC 25435]
Length = 949
Score = 313 bits (803), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 195/518 (37%), Positives = 281/518 (54%), Gaps = 52/518 (10%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
++YDF +D FQ + ++ G V+V+APT SGKT++ E A + ++ FYTTP+KA
Sbjct: 45 AMYDFGLDPFQIEACQSLESGKGVLVAAPTGSGKTIVGEFAVHLALEQGKKCFYTTPIKA 104
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD 273
LSNQK+ + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L
Sbjct: 105 LSNQKYSDLCRRYGADKVGLLTGDNSVNSDAPVVVMTTEVLRNMLY------AGSRTLLG 158
Query: 274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 333
+ +V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G T++
Sbjct: 159 LGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTDV 218
Query: 334 ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGSRRR 391
I S RPVPL + + L +E G+ + ++ + +++ E +P Y+D RR
Sbjct: 219 IVSEHRPVPLFQHVLAGRRMYDLFEE-GEGNKKAVNPDLTRMARMEASRPSYQD----RR 273
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
R + + + + I P+VI+ L S +LPAI FIF+R
Sbjct: 274 RGRSMREADRER----------ERRQRSRIWIPSRPEVIE---RLDSEGLLPAITFIFSR 320
Query: 452 RGCDAAVQYLEDCNLL---DECEMSEVELALKRFRILYPDAVREPA----IKGLLKGVAA 504
C+AAVQ L DE + L +R + + + ++GL +G+AA
Sbjct: 321 AACEAAVQQCLYAGLRLNDDESRLKVRALVEERTASIPNEDLHVLGYYEWLEGLERGIAA 380
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T
Sbjct: 381 HHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITP 440
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E Q+ GRAGRRGID GH V++ + L PL S F SY M +NL+
Sbjct: 441 GEYTQLTGRAGRRGIDVEGHAVVLWQRGMNPDHLAGLAGTRTYPLRSSFKPSYNMAVNLV 500
Query: 625 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
Q GR +R+L+E SF +
Sbjct: 501 E-----------------QFGR--HRSRELLETSFAQF 519
Score = 49.7 bits (117), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 93/218 (42%), Gaps = 16/218 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RLK + +L +RIE + + F RI ++ E L + + G+ A + G
Sbjct: 731 ERYYRLKRDTAQLERRIEGRTNTIARTFDRIVALLTELDYLRADE--VTEHGKRLARLYG 788
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT-------V 1069
E +L + LR + L PA+LAA ++LV E R + + PS +
Sbjct: 789 ELDLLASECLRAGVWEGLGPAELAACVSALVYE---ARAADDAMAPKLPSGNAKAALGEM 845
Query: 1070 INVINVLDEHRSSFLELQ-EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 1128
+ + LD F Q E G P D F+ WASG E++ + + GD
Sbjct: 846 VRIWGRLDALEEEFRITQSEGVGQREP---DLGFAWAAYMWASGSGLDEVLREVEMPAGD 902
Query: 1129 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
R ++ ID+L QI + KNA A + + R
Sbjct: 903 FVRWCKQVIDVLGQISAAAPSGSSVGKNARKAVDGLLR 940
>gi|433635162|ref|YP_007268789.1| Putative ATP-dependent DNA helicase HelY [Mycobacterium canettii
CIPT 140070017]
gi|432166755|emb|CCK64258.1| Putative ATP-dependent DNA helicase HelY [Mycobacterium canettii
CIPT 140070017]
Length = 904
Score = 313 bits (803), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 197/534 (36%), Positives = 270/534 (50%), Gaps = 71/534 (13%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
E+ ++D + F +D FQ+ + A RG V+V APT +GKT++ E A +A
Sbjct: 2 TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGS 61
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ FYTTPLKALSNQK + +G + +GLLTGD ++N A +++MTTE+LRNMLY
Sbjct: 62 KCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLY---- 117
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LSATV+NA+E GW
Sbjct: 118 --ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGW 175
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 383
I + G T ++ RPVPL + + L D Y
Sbjct: 176 IQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFD------------------------Y 211
Query: 384 KDGGSRRRNS----RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 439
D G + R + R A + + + + R P+VI L +
Sbjct: 212 DDAGGQPRVNPDLLRHIAHRREADRMADWQPRRRGSGRPGFYRPPGRPEVIAK---LDAE 268
Query: 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLL-----DECEMSEV------ELALKRFRILYPD 488
+LPAI F+F+R GCDAAV L + ++EV +LA +L
Sbjct: 269 GLLPAITFVFSRAGCDAAVTQCLRSQLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYY 328
Query: 489 AVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART VL
Sbjct: 329 EWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVL 384
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
L K + LT E Q+ GRAGRRGID GH V++ P E L P
Sbjct: 385 ERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRTFP 444
Query: 609 LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
L S F SY M +NL +H ++A +L+EQSF Y
Sbjct: 445 LRSSFAPSYNMTINL------VHRMGP-------------QQAHRLLEQSFAQY 479
>gi|408500978|ref|YP_006864897.1| helicase [Bifidobacterium asteroides PRL2011]
gi|408465802|gb|AFU71331.1| helicase [Bifidobacterium asteroides PRL2011]
Length = 854
Score = 313 bits (803), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 217/640 (33%), Positives = 324/640 (50%), Gaps = 70/640 (10%)
Query: 114 SSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLR 173
SS S P P+ R + +++ F +++ F +D FQ +I A
Sbjct: 11 SSASEPGPAERYARFSRNRKRMTGAPARFQSKL----------PFPLDDFQLEAITALED 60
Query: 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGL 233
G +V+V+APT +GKT++A+ A + FYTTP+KALSNQK+ + + +G++ VGL
Sbjct: 61 GDNVLVAAPTGAGKTIVADFAVFLAQEQNVKTFYTTPIKALSNQKYHDLVDRYGEDRVGL 120
Query: 234 LTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTV 293
LTGD++IN EA I++MTTE+LRNMLY+ S L + ++LDEVHYL+D RG V
Sbjct: 121 LTGDTSINSEADIVVMTTEVLRNMLYE------QSSTLTALKYVILDEVHYLADRFRGPV 174
Query: 294 WEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF------ 347
WEE+II+ P ++I+ LSATV+N +E + WI + G+T L+ S RRPVPL +
Sbjct: 175 WEEVIIHLPASIRIVGLSATVSNVEEFSDWISSVRGRTHLVVSERRPVPLEQHVLVQADR 234
Query: 348 STKTALLPLLDEKGK-----HMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSN 402
T+ +L L G +N +L QL + G R +R + +
Sbjct: 235 HTEPEILDLYRHDGSGRQTPKINPRLVSRLAQLDKT--------GQERAQARDQGHHHRH 286
Query: 403 NIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLE 462
+ + R V+D L + DMLP I+FIF+R GCD AVQ
Sbjct: 287 GRGGR------PERRMGERYRPSRADVVDELDFM---DMLPGIYFIFSRTGCDQAVQQCI 337
Query: 463 DCNL---LDE---------CEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCL 510
L DE M+ +L+ + + L R L +G AAHHAG +
Sbjct: 338 RAGLQLTTDEEARRIRHIVDSMAAGQLSKEDLKALGFSQFR----FALEQGFAAHHAGVV 393
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
+++ +E LF+ GL+KVVFATETLA GINMPAR V+ L K +G + LT E Q+
Sbjct: 394 TLFRQIVEHLFELGLLKVVFATETLALGINMPARCVVVEKLEKFDGTGHVALTPGEFTQL 453
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 630
GRAGRRGID+ GHVV+V + L V PL S F ++ M +NLL +
Sbjct: 454 TGRAGRRGIDDIGHVVVVDHRDFSPKTMAALSSRRVYPLHSSFRPTFNMAVNLLNSSSYG 513
Query: 631 HLSNESDDMKAL-QAGRS---LEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLT 686
+ D A +A RS LEE + + +Y ++ +L + + L+
Sbjct: 514 RARDTLDHSFAQWEANRSASELEERIETLTSGLEDY--RKAARCSRGDLIEFMRIRAALS 571
Query: 687 SEISDDAIDRKSRRLLSEA----AYKEMANLQEELKAEKR 722
S +D K +R SE A++++ ++L+ ++R
Sbjct: 572 SAQKNDRRRLKRQRFTSEKARDRAFRDLDRHIDQLREQER 611
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 114/270 (42%), Gaps = 31/270 (11%)
Query: 925 QRTKVARLKKKIARTEGFKEYKKIVDTVKFTEE------------------KIKRLKARS 966
+R K R + AR F++ + +D ++ E + R+
Sbjct: 579 RRLKRQRFTSEKARDRAFRDLDRHIDQLREQERNHPCRQCPDLPKHLRWGNRWIRMDKEL 638
Query: 967 KRLTKRIEQIEPSGWKEFLRISNVI---HETRALDINTQVIFPLGETAAAIRGENELWLA 1023
+R ++ E S ++F RI ++ H TR +D + + G+ I E +L LA
Sbjct: 639 QRTREQYESKTGSVSRQFDRICQILADLHYTRPVDPDDCRLTRKGQLLRRIYSEQDLSLA 698
Query: 1024 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSF 1083
+L IL DL+PA+LAA + LV E R ++ +++ + +
Sbjct: 699 EILDRGILNDLEPAELAAAVSGLVYES---RRGVGEQPGERAGYRAHRLVEAMEDMKRQW 755
Query: 1084 LELQEK---HGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 1140
++QE+ G+E+P LD + WA G + ++ D L GD R +R D+L
Sbjct: 756 SQVQERCDQAGLELPPELDFGLGPTIYDWACGDSLTAILRDSDLTAGDFVRNAKRLSDVL 815
Query: 1141 AQI----PKLPDVDQRLQKNAVDASNVMDR 1166
QI P L L + A A++ ++R
Sbjct: 816 TQIVQVEPYLGRGGHHLARTASIAADQVNR 845
>gi|270283967|ref|ZP_06193769.1| putative helicase [Bifidobacterium gallicum DSM 20093]
gi|270277807|gb|EFA23661.1| putative helicase [Bifidobacterium gallicum DSM 20093]
Length = 826
Score = 313 bits (803), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 197/500 (39%), Positives = 272/500 (54%), Gaps = 54/500 (10%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A F +D FQ + EA GS+V+V+APT +GKT++A+ A + FYTTP
Sbjct: 4 EFAEKMPFDLDGFQMEANEALEDGSNVLVAAPTGAGKTVVADFAVFLAQHRNAKAFYTTP 63
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+ + +G VGLLTGD++IN EA I++MTTE+LRNMLY+ S
Sbjct: 64 IKALSNQKYHDLVAVYGAEKVGLLTGDTSINSEADIVVMTTEVLRNMLYEH------SST 117
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +VLDEVH+L+D RG VWEE+II+ P+ V+I+ LSATV+N ++ A WI + G+
Sbjct: 118 LNALRYVVLDEVHFLADKFRGPVWEEVIIHLPQSVRIVGLSATVSNVEDFAKWIASVRGE 177
Query: 331 TELITSSRRPVPLTWYF------STKTALLPL--LDEKGKH---MNRKLSLNYLQLSTSE 379
T+L+ S RPVPL + T+ L L DE G +N +L +
Sbjct: 178 TKLVVSELRPVPLEQHVMIQKDPRTEPELFDLYRFDEDGHQTTKINGRLVARLSEFDHRA 237
Query: 380 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHL 436
+ + +RR FG H+ + S A +P+ V+D L L
Sbjct: 238 EQRLEHERPKRRGR--------------FG-HRPNGRSRGAQAERYIPKRWAVVDELNFL 282
Query: 437 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL----DEC--------EMSEVELALKRFRI 484
+LPAI+FIF+R GCD AV++ + L DE EM + +L + +
Sbjct: 283 ---GLLPAIYFIFSRNGCDEAVEHCLNAGLQLTTDDEARRIRQIVDEMIQGQLTHEDLKT 339
Query: 485 LYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 544
L R L +G A HHAG + +++ +E LF+ GL+KVVFATETLA GINMPAR
Sbjct: 340 LQFSRFR----YALEEGFAPHHAGMVALFRQIVERLFEEGLIKVVFATETLALGINMPAR 395
Query: 545 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 604
+ VL L K +G + LT E Q+ GRAGRRGID GH V+V E L
Sbjct: 396 SVVLEKLEKYDGTGIVGLTPGEYTQLTGRAGRRGIDTIGHAVVVDYRGFKPETAAALSSK 455
Query: 605 GVEPLVSQFTASYGMVLNLL 624
V PL S F ++ M +NLL
Sbjct: 456 RVYPLHSSFKPTFNMAVNLL 475
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 15/173 (8%)
Query: 982 KEFLRISNVIHETRAL---DINTQVIFPLGETAAAIR---GENELWLAMVLRNKILLDLK 1035
++F RI ++ L D + + L E+ +R E +L LA + N +L DL
Sbjct: 622 RQFDRICTILASLGYLEPADRDGHRDYTLTESGQLLRRLYSERDLLLAEAIDNGVLEDLT 681
Query: 1036 PAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHR---SSFLELQEKHGV 1092
A+LA V +S+V E R Y P V + + E + S L E G+
Sbjct: 682 AAELAGVLSSIVYEA---RRGAGGEPRYYPGGAHGRVADAVTELKLLDSRLNVLCEDAGM 738
Query: 1093 --EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 1143
++P LD S +V WASG + E++ D L GD R +R D+L QI
Sbjct: 739 TRDLPM-LDFGISDIVYEWASGDSLAEVLHDSELTGGDFVRNAKRLADVLQQI 790
>gi|365991078|ref|XP_003672368.1| hypothetical protein NDAI_0J02330 [Naumovozyma dairenensis CBS 421]
gi|343771143|emb|CCD27125.1| hypothetical protein NDAI_0J02330 [Naumovozyma dairenensis CBS 421]
Length = 1310
Score = 313 bits (803), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 193/533 (36%), Positives = 288/533 (54%), Gaps = 48/533 (9%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V L + + F +E+ V A + F +D FQ+ ++ +G SV V+A TS+GK
Sbjct: 317 EWAHVVDLNHRIYNF-SEL--VPNPARTWPFELDTFQKQAVYHLEQGDSVFVAAHTSAGK 373
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A + N + YT+P+KALSNQKFR+F+ETF D ++GL+TGD IN EA L
Sbjct: 374 TVVAEYAIAMSKRNMTKTIYTSPIKALSNQKFRDFKETFEDVDIGLITGDVQINPEANCL 433
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V+
Sbjct: 434 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 487
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-- 364
I LSATV N E A WIG+ K +I++ +RPVPL L+P++ + + +
Sbjct: 488 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWASKQLIPVISPQREFLDS 547
Query: 365 NRKLSLNYLQLSTSEVKPYKDGGSRRRNSR--------KHADMNS--------------- 401
N K L STS +K + + NS+ + NS
Sbjct: 548 NFKKHKELLSGSTSSMKAADNPKKQAANSKRSGQNGGGRGGSTNSRGGGQRGGNRGGNRG 607
Query: 402 ----NNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAA 457
+ + G ++ +A + P +++ L+++D+LP + F+F+++ C+
Sbjct: 608 GLRGSRGAGAVGSNKRQFFQKSAPNKKTWPDLVN---FLKAKDLLPMVVFVFSKKRCEEY 664
Query: 458 VQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE----PAIKGLL-KGVAAHHAGCLPI 512
+LE N + E S+V + ++ RE I+ LL +G+A HH G LPI
Sbjct: 665 ADWLEGINFCNAKEKSQVHMFIENSITRLKKEDRELPQIMKIRNLLERGIAVHHGGLLPI 724
Query: 513 WKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAG 572
K IE LF +G +KV+FATET A G+N+P RT V S + K +G LT E QMAG
Sbjct: 725 VKELIEILFSKGFIKVLFATETFAMGLNLPTRTVVFSEIRKHDGTGLRDLTPGEFTQMAG 784
Query: 573 RAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV-EPLVSQFTASYGMVLNLL 624
RAGRRG+D G V+++ K + G+ L SQF +Y M+LNLL
Sbjct: 785 RAGRRGLDKTGTVIVMSYTEPLQPASFKEVTLGIPTKLESQFRLTYNMILNLL 837
>gi|453052611|gb|EMF00090.1| ATP-dependent RNA helicase [Streptomyces mobaraensis NBRC 13819 =
DSM 40847]
Length = 938
Score = 313 bits (801), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 197/517 (38%), Positives = 273/517 (52%), Gaps = 47/517 (9%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+YDF +D FQ + +A G V+V+APT SGKT++ E A + R+ FYTTP+KAL
Sbjct: 31 MYDFELDPFQIDACKALEAGKGVLVAAPTGSGKTIVGEFAVHLALREGRKCFYTTPIKAL 90
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + + +G VGLLTGD+++N +A +L+MTTE+LRNMLY + L +
Sbjct: 91 SNQKYNDLVKRYGAAKVGLLTGDNSVNSDAPVLVMTTEVLRNMLY------AGSQALNGL 144
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G TE+I
Sbjct: 145 GHVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 204
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
S RPVPL + + L +EK ++ EV P +R NSR
Sbjct: 205 VSEHRPVPLWQHVLAGRRMYDLFEEKTGPDGTPVT------GRREVNPDLVRLARMENSR 258
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
+ + + R P ++ + L + +LPAI FIF+R GC
Sbjct: 259 PMGGRDRRRGREA-----DRERERRQRSRIWTPSRVEVIERLDAEGLLPAITFIFSRAGC 313
Query: 455 DAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGVAAHHA 507
++AVQ L D+ V ++ PD ++GL +G+AAHHA
Sbjct: 314 ESAVQQCLYAGLRLNDDDARRRVREIVEERTASIPDEDLHVLGYFEWLEGLERGIAAHHA 373
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
G LP +K +EELF +GLVK VFATETLA GINMPAR+ VL L K +T E
Sbjct: 374 GMLPTFKEVVEELFVKGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITPGEY 433
Query: 568 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE--PLVSQFTASYGMVLNLLA 625
Q+ GRAGRRGID GH V++ G + AG PL S F SY M +NL++
Sbjct: 434 TQLTGRAGRRGIDVEGHAVVLWQ--RGMDPGALAGLAGTRTYPLRSSFKPSYNMAVNLVS 491
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
Q GR +R+L+E SF +
Sbjct: 492 -----------------QFGR--HRSRELLETSFAQF 509
Score = 45.8 bits (107), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 12/216 (5%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD-INTQVIFPLGETAAAIR 1015
E+ RL +++L +RIE + + F RI ++ + LD + + G A +
Sbjct: 720 ERYHRLLRDTRQLERRIEGRTNTIARTFDRICALLTD---LDYLRNDEVTEHGRRLARLY 776
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 1075
GE +L + LR + L PA+LAA ++LV E R+ + + PS +
Sbjct: 777 GELDLLASECLREGVWDGLAPAELAACASALVYE---ARMSDDAVAPKLPSGAAKAALGE 833
Query: 1076 LDEHRSSFLELQEKHGVEIPCCL-----DSQFSGMVEAWASGLTWREMMMDCALDDGDLA 1130
+ L+E H + + D F+ WASG E++ + + GD
Sbjct: 834 MVRIWGRLDALEEAHRINQAEGVGQREPDLGFAWAAYRWASGHGLDEVLREIEMPAGDFV 893
Query: 1131 RLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
R ++ ID+L QI + +NA A + + R
Sbjct: 894 RWTKQLIDVLGQIAAAAPHGSPVARNARKAVDGLLR 929
>gi|71003748|ref|XP_756540.1| hypothetical protein UM00393.1 [Ustilago maydis 521]
gi|46095704|gb|EAK80937.1| hypothetical protein UM00393.1 [Ustilago maydis 521]
Length = 1301
Score = 313 bits (801), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 191/528 (36%), Positives = 283/528 (53%), Gaps = 42/528 (7%)
Query: 129 WQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKT 188
W V + ++ F +E+ V ++A + F +D FQ+ ++ +G SV V+A TS+GKT
Sbjct: 306 WAHVIDVNQQLSNF-HEL--VPQMAHSFPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKT 362
Query: 189 LIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILI 248
++AE A + R YT+P+KALSNQK+R+F++TFG NVG+LTGD IN EA LI
Sbjct: 363 VVAEYAIALAQKHMTRCIYTSPIKALSNQKYRDFKQTFGAANVGILTGDVQINPEAPCLI 422
Query: 249 MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQII 308
MTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II CP+ + +I
Sbjct: 423 MTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQERGVVWEEVIILCPQHINLI 476
Query: 309 CLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLD--------- 358
LSATV N E A W+G+ K +I++ +RPVPL + + ++D
Sbjct: 477 LLSATVPNTKEFADWVGRTKKKDIYVISTPKRPVPLEHFLYAGKEMFKIVDARAQFLGSG 536
Query: 359 --EKGKHMNRK------LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQ 410
E G+ + RK + + + GG+ NSR M G+
Sbjct: 537 LKEAGEALKRKQEKEREANAAATGGGGGAARGGRGGGAAGSNSRGRGGMTPARGAAPRGR 596
Query: 411 HQLSKNSINAIRRSQVPQV-------IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED 463
+ + + I + HLR +++LP + F+F+++ C+ + +
Sbjct: 597 GGAAGGRGGGFPGTTTVRTGLDKNLWIHLVGHLRKKELLPCVVFVFSKKRCEEYATSMPN 656
Query: 464 CNLLDECEMSEVELALKRFRILYPDAVRE-PAIKG----LLKGVAAHHAGCLPIWKSFIE 518
+L + SEV + +++ +E P IK L +G+ HH G LPI K +E
Sbjct: 657 TDLNTAKDKSEVHILIEKSLTRLKGTDKELPQIKRMRDLLGRGIGVHHGGLLPIVKEIVE 716
Query: 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578
LFQRGLVKV+FATET A G+NMPAR+ V SS+ K G +L E QM+GRAGRRG
Sbjct: 717 LLFQRGLVKVLFATETFAMGVNMPARSVVFSSIRKHDGHGFRELLPGEYTQMSGRAGRRG 776
Query: 579 IDNRGHVVLVQTPYEGAEECC--KLLFAGVEPLVSQFTASYGMVLNLL 624
+D G VV++ + E K L L SQF +Y M+LNLL
Sbjct: 777 LDATG-VVIINAADQLPETAVLHKTLLGQPTKLSSQFRLTYNMILNLL 823
>gi|298713164|emb|CBJ26920.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 1408
Score = 313 bits (801), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 227/653 (34%), Positives = 326/653 (49%), Gaps = 118/653 (18%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
+++ F +D FQ ++ ++V+VSAPT SGKT++ E A V FYTTPLKA
Sbjct: 384 ALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAVV---------FYTTPLKA 434
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG-LF 272
LSNQKF++FR FG++ VGLLTGDS+ NR+AQ+ +MTTE+ RNMLY S E+G L
Sbjct: 435 LSNQKFQDFRRQFGEDKVGLLTGDSSFNRDAQVAVMTTEVFRNMLYD-----SEETGELD 489
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 332
DV +V DE HY++D RGTVWEE +I CPK V ++ LSAT++N E+ W+ HG +
Sbjct: 490 DVFAVVFDEFHYMNDRDRGTVWEESVINCPKTVLMVALSATMSNVGEIKDWVEHTHGASS 549
Query: 333 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN-YLQLSTSEVKPYKDGGSRRR 391
L+ S RPVPL+ + + LL+ H N L+ Y Q + + + GGS R
Sbjct: 550 LVVSDFRPVPLSLRINVE-----LLE---SHENDLLAAKRYSQRNDDDGR----GGSGRS 597
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
+ + + KN NA R+ VP + L +D+LPAI FIF+R
Sbjct: 598 SKYGRGGGGGGSRGYR---REARKNMRNAAYRA-VPSFPYLVRCLGRKDLLPAIVFIFSR 653
Query: 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL--LKGVAAHHAGC 509
GCD A + + + ++ F D V + ++ L ++ C
Sbjct: 654 VGCDQAAKQV------------TTSVGVQFFWPCILDTVVDHFLQALDWMRPARQGQRPC 701
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
P L +R VVFATETLAAG+NMPAR V+++LSKR +G ++L ++L Q
Sbjct: 702 HPT-------LLRR---TVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLNPSQLLQ 751
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
M GRAGRRG D+ G VVL+++ +E E +LL + ++ + SQF +SYGM + +L
Sbjct: 752 MGGRAGRRGKDSSGSVVLMRSRFEDCIEAHRLLLSPMDGIESQFKSSYGMAVGVL----- 806
Query: 630 MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEI 689
R + AR LVE+SFGN+V + A+ + Q++ D L +
Sbjct: 807 --------------RTRDMASARVLVEKSFGNFVRRKRVGPAQSRASEAQEKLDELKDQ- 851
Query: 690 SDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 749
LQ AE +F +L RME E G
Sbjct: 852 -----------------------LQGTTLAEAKFYRKLWERME-------------SEKG 875
Query: 750 HLPFLCLQ--YKDSEGVEHSVPAVYLGK----FDSLDSSKLKNMASINDSFAL 796
L +L Q + E VE +P LG D S+ L MA + + L
Sbjct: 876 ILAYLQAQDLEAEQEVVETILPLARLGSAITLADGRTSALLGEMAPVGATAQL 928
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 124/225 (55%), Gaps = 9/225 (4%)
Query: 950 DTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRAL---DINTQVIFP 1006
++V ++I L+ + ++ K ++++ W EFL + V+ AL +++T F
Sbjct: 1116 ESVARLSKEIISLEEQVRQGWKTEQKLKQPAWDEFLAVCRVLKRYDALKDAEVSTPTAF- 1174
Query: 1007 LGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPS 1066
G +I ENELW+A+VL K +L L +LA++ ++++E + L+ ++Y PS
Sbjct: 1175 -GRMVGSINAENELWMALVLTRKSILQLGYTELASLMPAILNEYTRPDLF----TLYGPS 1229
Query: 1067 TTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD 1126
V + L S E+Q VE P LD + G+VE WA+G W E++ +LD
Sbjct: 1230 EGVSAFLEELAPVASELSEIQMLEQVEQPVRLDGKLCGLVEGWANGCDWSELVASTSLDQ 1289
Query: 1127 GDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 1171
GDL R+LRR +++L QIP LP + L+ A A++ +DR P+S+
Sbjct: 1290 GDLCRILRRAMEMLRQIPVLPGLPAVLKDRARLAADSLDRFPVSD 1334
>gi|378717910|ref|YP_005282799.1| putative ATP-dependent RNA helicase [Gordonia polyisoprenivorans
VH2]
gi|375752613|gb|AFA73433.1| putative ATP-dependent RNA helicase [Gordonia polyisoprenivorans
VH2]
Length = 945
Score = 313 bits (801), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 202/526 (38%), Positives = 284/526 (53%), Gaps = 53/526 (10%)
Query: 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209
D + DFR+D FQ + A G V+V APT +GKT++ E A +A+ + FYTT
Sbjct: 19 DTFVARLDFRLDDFQIRACHALESGHGVLVCAPTGAGKTIVGEFAVHLALASGSKCFYTT 78
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSES 269
P+KALSNQK+ + G +VGLLTGD++IN +A +++MTTE++RNM+Y ++
Sbjct: 79 PIKALSNQKYADLVAVHGAASVGLLTGDTSINSDAPVVVMTTEVVRNMIY------ANSP 132
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L + +V+DEVH+L+D RG VWEE+I++ V+++ LSATV+NA+E WI + G
Sbjct: 133 ALNGLSHVVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLSATVSNAEEFGEWIQTVRG 192
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
T +I RPVPLT + + L L D +G + + +N E+K +
Sbjct: 193 DTTVIVDDHRPVPLTQHMLVGSRLFDLFDSRGAAGDHRPKVN------PELKRFI----- 241
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
+H + ++ + + R QV + L +LPAI FIF
Sbjct: 242 -----RHRMLLDDDDDQRGRRGRGRPRRKPGPPRPQV------VARLEKEGLLPAIGFIF 290
Query: 450 NRRGCDAAV-QYLED-CNLLDECEMSEV---------ELALKRFRILYPDAVREPAIKGL 498
+R GCD A+ Q L NLL +++ V EL+ +L D R GL
Sbjct: 291 SRAGCDGALAQCLRSGLNLLTPDQVAAVDDVVDRHLTELSPADADVLGVDEWR----AGL 346
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G AAHHAG LP ++ +EELF RGLV++VFATETLA GINMPAR+ VL L K
Sbjct: 347 RRGFAAHHAGLLPTFRHTVEELFVRGLVRMVFATETLALGINMPARSVVLERLVKFNGEA 406
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+ L+ E Q+ GRAGRRGID GH V+V +P E+ L A PL S F Y
Sbjct: 407 HVDLSPGEFTQLTGRAGRRGIDVEGHAVIVWSPELIPEQVAGLAGARTFPLRSSFAPEYN 466
Query: 619 MVLNL-----LAGAKVMHLSNESDDMKALQAGRS-LEEARKLVEQS 658
M +NL LAG++ L N S QA RS + +ARK+ E S
Sbjct: 467 MAVNLIGRLGLAGSR--DLLNRS--FAQFQADRSVVGQARKVDEMS 508
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 11/170 (6%)
Query: 1004 IFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIY 1063
+ P GE + I E++L + +R I L P LAAV A++V E + ++
Sbjct: 772 VTPTGEVLSRIYSESDLVVTECIRAGIWDKLSPPDLAAVVAAMVFESRRESYSGADAMSG 831
Query: 1064 EPS--TTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMD 1121
P+ T + + + + S ++ +H V D+ FS V W SG + E +
Sbjct: 832 NPALRTAIADTVGIW----RSVTAVESRHHVSPTREPDTGFSVAVSLWVSGRSLTEALAA 887
Query: 1122 CA-----LDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
L GD R R+ +DLL QI D L + A A + R
Sbjct: 888 AGERGHLLSPGDFVRWNRQVVDLLEQIRLCVGEDSPLARPARVAVGAIRR 937
>gi|19075595|ref|NP_588095.1| Ski complex RNA helicase Ski2 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74676014|sp|O59801.1|SKI2_SCHPO RecName: Full=Putative ATP-dependent RNA helicase C550.03c
gi|3136048|emb|CAA19107.1| Ski complex RNA helicase Ski2 (predicted) [Schizosaccharomyces
pombe]
Length = 1213
Score = 313 bits (801), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 198/571 (34%), Positives = 301/571 (52%), Gaps = 46/571 (8%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V E+A + F +D FQ+ +I G SV V+A TS+GKT++AE A + + YT
Sbjct: 270 VPEMALDFPFELDNFQKEAIYHLEMGDSVFVAAHTSAGKTVVAEYAIALAQKHMTKAIYT 329
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+F+ F D VG+LTGD +N E L+MTTEILR+MLY+ ++
Sbjct: 330 SPIKALSNQKFRDFKHKFED--VGILTGDVQVNPEGSCLLMTTEILRSMLYRGADLIR-- 385
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D+ RG VWEE+II P V +I LSATV N E A W+G+
Sbjct: 386 ----DVEFVIFDEVHYVNDLERGVVWEEVIIMLPPHVTLILLSATVPNTKEFASWVGRTK 441
Query: 329 GKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
K +I++ +RPVPL Y K + ++D+ G R L Y + + KP K
Sbjct: 442 KKNIYVISTLKRPVPLEHYLWVKQNMFKIVDQHG----RFLMDGYKSANDALKKPDKPVI 497
Query: 388 SR-RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
++ +NS + V + + S ++ R + + HL +++LP I
Sbjct: 498 AKDNKNSARGRGAARGRGVQT--NMMRGRGSAKSVERRDANTWVHLIGHLHKQNLLPVIV 555
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELA-------LKRFRILYPDAVREPAIKGLL 499
F+F+++ C+ V L + +L + E SEV + LK+ L P R + L
Sbjct: 556 FVFSKKRCEEYVDTLTNRDLNNHQEKSEVHVVIEKAVARLKKEDRLLPQIGRMREM--LS 613
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+G+A HH G LPI K +E LFQRGLVKV+FATET A G+NMPA++ V S K
Sbjct: 614 RGLAVHHGGLLPIIKEIVEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDGRNF 673
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
L E Q +GRAGRRG+D G V+++ ++ ++ L+SQF +Y
Sbjct: 674 RDLLPGEYTQCSGRAGRRGLDVTGTVIILSRSELPDTASLRHMIMGPSSKLISQFRLTYN 733
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKI 678
M+LNLL +V L E ++++SF V ++ ++++
Sbjct: 734 MILNLL---RVETLRIED-----------------MIKRSFSENVNQTLVPQHEEKIKSF 773
Query: 679 QKETDVLTSEISDDAIDRKSRRLLSEAAYKE 709
+++ L E+SD + LLS ++KE
Sbjct: 774 EEKLSALKKEMSDVDLKEIKSCLLSSESFKE 804
>gi|330468496|ref|YP_004406239.1| dsh domain-containing protein [Verrucosispora maris AB-18-032]
gi|328811467|gb|AEB45639.1| dsh domain protein [Verrucosispora maris AB-18-032]
Length = 925
Score = 313 bits (801), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 195/536 (36%), Positives = 271/536 (50%), Gaps = 74/536 (13%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAA-----------VA 197
++E S F +D FQR + +A RGS V+V APT +GKT++ E A V
Sbjct: 24 LEEFTSDIGFDLDDFQREACQALERGSGVLVCAPTGAGKTVVGEFAVHLALRGTPGQPVP 83
Query: 198 TVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNM 257
T +R+ FYTTP+KALSNQK+ + + +G VGLLTGD+AIN +A +++MTTE+LRNM
Sbjct: 84 TDGARRKCFYTTPIKALSNQKYHDLVDRYGAAQVGLLTGDNAINGDAPVVVMTTEVLRNM 143
Query: 258 LYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA 317
LY + + L + +V+DEVHYL+D RG VWEE+II+ P V ++ LSATV+NA
Sbjct: 144 LY------AGSATLEGLAYVVMDEVHYLADRFRGGVWEEVIIHLPASVTLVSLSATVSNA 197
Query: 318 DELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLST 377
+E A W+ + G+T ++ S RPVPL + + L + + L+ +
Sbjct: 198 EEFADWLITVRGETTVVVSEHRPVPLWQHMLVGKRMFDLFHDAAAARKHDVHPELLRYT- 256
Query: 378 SEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437
R + + D+ G+ + + R + P D + L
Sbjct: 257 -------------RETVRRLDL---------GEGRAAGWGGRRGPRWRGPSRPDIVERLD 294
Query: 438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA--- 494
+LPAI FIF+R GC AAVQ L ++ E + R++ P
Sbjct: 295 REGLLPAILFIFSRAGCAAAVQQCLAAGL----RLTSPEERAEIRRVVESRVTAIPGEDL 350
Query: 495 --------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
+ GL +G+A+HHAG LP++K +EELF RGLVK VFATETLA GINMPAR
Sbjct: 351 SVLGYWEWLDGLERGLASHHAGMLPVFKEVVEELFVRGLVKAVFATETLALGINMPARCV 410
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606
VL L K + LT E Q+ GRAGRRGID GH V+V +P L
Sbjct: 411 VLERLVKYNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWSPETDPRHVAGLASTRT 470
Query: 607 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F SY M +NL+ + AR L+E SF +
Sbjct: 471 YPLRSSFRPSYNMAVNLVGSVGA-------------------DPARALLESSFAQF 507
Score = 40.8 bits (94), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 89/215 (41%), Gaps = 10/215 (4%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ +RL+ ++ L +R+ S + F RI ++ TR + G I
Sbjct: 707 ERRRRLERDTEELRERVAGRTGSLARTFDRIVALL-TTRGYLTAEGEVTDAGRMLGRIWT 765
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E +L +A LR + L PA+LAA + +V E R +S+ P V ++
Sbjct: 766 EADLLVAECLRRGVWDGLSPAELAAAVSVVVFEA--RRDVDERASL--PRGPVAEAVDAT 821
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDCALDDGDLAR 1131
+ S + G+ + D F+ + WA G +++ +D + GD R
Sbjct: 822 LKLWSEIEADEAARGLTVTREPDLGFAWPIYRWARGEALAKVLASGHELDGEMPAGDFVR 881
Query: 1132 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
R+ +DLL Q+ L+ A A V++R
Sbjct: 882 WARQVVDLLGQVADSGGASAELRATARQAIGVVNR 916
>gi|171742931|ref|ZP_02918738.1| hypothetical protein BIFDEN_02049 [Bifidobacterium dentium ATCC
27678]
gi|171278545|gb|EDT46206.1| DEAD/DEAH box helicase [Bifidobacterium dentium ATCC 27678]
Length = 857
Score = 313 bits (801), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 223/645 (34%), Positives = 324/645 (50%), Gaps = 99/645 (15%)
Query: 119 PAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVV 178
P+PS R Q K F M F +D FQ + EA S+V+
Sbjct: 12 PSPSQRYAMFKQTQRKQGMAATRFAQSM----------PFELDDFQMEANEALEADSNVL 61
Query: 179 VSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDS 238
V+APT +GKT++A+ A + FYTTP+KALSNQK+ + + +G + VGLLTGD+
Sbjct: 62 VAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKALSNQKYHDLVDQYGQDRVGLLTGDT 121
Query: 239 AINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII 298
+IN EA I++MTTE+LRNMLY+ + + + ++LDEVHYL+D RG VWEE+I
Sbjct: 122 SINSEADIVVMTTEVLRNMLYEHSMTLEA------LRYVILDEVHYLADRFRGPVWEEVI 175
Query: 299 IYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF------STKTA 352
I+ P+ V+II LSATV+N ++ + WI + G T+LI S +RPVPL + T+
Sbjct: 176 IHLPQSVKIIGLSATVSNVEDFSNWIVSVRGDTKLIVSEKRPVPLEQHVLVQADDRTEPE 235
Query: 353 LLPLLDEKGKHMNRKLSLNYL---QLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFG 409
L+ L + H ++ + LN +L + + + G++R RK +
Sbjct: 236 LIDLY-RRDAHGDQTVKLNAQLLNRLDQLDRQAARRQGAQRPERRKGKGKGPWH------ 288
Query: 410 QHQLSKNSINAIRRSQVPQ---VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL 466
+ S + + R P+ V+D L L DMLP I+FIF+R GCD AV+ + L
Sbjct: 289 ----DRESSHKVER-HTPKRWAVVDELNFL---DMLPGIYFIFSRNGCDQAVEQCINAGL 340
Query: 467 --------------LDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPI 512
+D EM + +L+ + + L+ R L +G A HHAG + +
Sbjct: 341 ELTSNGEVRRIRRIVD--EMIDGQLSQEDLKALHFSQFR----FALEEGFAPHHAGMIAL 394
Query: 513 WKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAG 572
++ +E LF+ GLVKVVFATETLA GINMPAR V+ L K +G + LT E Q+ G
Sbjct: 395 FRQIVERLFEEGLVKVVFATETLALGINMPARCVVVEKLEKYDGTGHVGLTPGEFTQLTG 454
Query: 573 RAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 628
RAGRRGID GH V+V P A K ++ PL S F ++ M +NLL
Sbjct: 455 RAGRRGIDTIGHAVVVDHRGFVPATAAALSSKRVY----PLHSSFRPTFNMAVNLL---- 506
Query: 629 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD----V 684
N SD E AR ++ SF + + + ++ ++K +
Sbjct: 507 -----NSSD----------YETARITLDHSFAQWEANESAWQLEAQMDTLKKALEGYEHA 551
Query: 685 LTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRR 729
T E D A + R LSE E L+ E+ FRT+ R
Sbjct: 552 FTCEFGDFADFMRLRMRLSELEKNERRRLKHEV-----FRTQSER 591
>gi|239917699|ref|YP_002957257.1| superfamily II RNA helicase [Micrococcus luteus NCTC 2665]
gi|281413806|ref|ZP_06245548.1| superfamily II RNA helicase [Micrococcus luteus NCTC 2665]
gi|239838906|gb|ACS30703.1| superfamily II RNA helicase [Micrococcus luteus NCTC 2665]
Length = 994
Score = 312 bits (800), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 220/658 (33%), Positives = 310/658 (47%), Gaps = 113/658 (17%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
++ A+ F +D FQR + G V+V+APT +GKT++ E A +A + FY
Sbjct: 35 ELGRFAARQGFPLDDFQRRACAEVEDGHGVLVAAPTGAGKTVVGEFAVHLALARGTKAFY 94
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK + G NVGLLTGD+++N +A +++MTTE+LRNMLY +
Sbjct: 95 TTPIKALSNQKHADLAHVHGAENVGLLTGDTSVNPDAPVVVMTTEVLRNMLY------AQ 148
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
L D+ +V+DEVHYL+D RG VWEE+II+ P+ VQ+I LSATV+NA+E W+ +
Sbjct: 149 SDALIDLGFVVMDEVHYLADRFRGPVWEEVIIHLPEHVQVISLSATVSNAEEFGAWLDTV 208
Query: 328 HGKTELITSSRRPVPLTWY----------FSTKTA------------LLPLLDEKGKHMN 365
G T +I S RPVPL + F+ A L P L G+
Sbjct: 209 RGATTVIVSEHRPVPLWQHVMAGGRLYDLFAEDIAFEDTADKDGAALLNPELKRLGEEAE 268
Query: 366 RKLSLN-------YLQLSTSEVKPYKDGGSR------RRNSRKHADMNSNNIVTSFGQHQ 412
R+ + + K GG R R HA G H
Sbjct: 269 RQFQRSDWGRPGRHRDGRGGGPKGRAKGGRRAGRDDGRGRHSSHALDRERPAAGRSGGHD 328
Query: 413 LSKNSINAIRRSQVPQVIDTLWHLRSRD-MLPAIWFIFNRRGCDAAVQYLEDCNLLDECE 471
+ + S+ P++I L RD +LP I FIF+R GCDAAV+ +C
Sbjct: 329 GGERRGPRLSTSR-PEMIRAL----DRDGLLPCITFIFSRAGCDAAVE---------QCL 374
Query: 472 MSEVELALKRFRILYPDAVREPA----------------IKGLLKGVAAHHAGCLPIWKS 515
+ ++L R + L + V E A GL +G AAHHAG LP +K
Sbjct: 375 RAGLDLTTAREKALVAERVEEAARLLPVEDLEILGFWAWRDGLSRGFAAHHAGMLPPFKE 434
Query: 516 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAG 575
+E+LF G +K VFATETLA GINMPAR+ V+ L K + +T E Q+ GRAG
Sbjct: 435 AVEDLFAAGALKAVFATETLALGINMPARSVVIEKLVKFNGENHVDITPGEYTQLTGRAG 494
Query: 576 RRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNE 635
RRGID GH V++ P L PL S F +Y M NLLA
Sbjct: 495 RRGIDVEGHAVVMWRPGLDPAAVAGLASRRTYPLRSSFRPTYNMSANLLA---------- 544
Query: 636 SDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDEL----CKIQKETDVLTSEISD 691
Q G E AR ++E SF + ++ E+ ++K + + + D
Sbjct: 545 -------QVG--AERARGILESSFAQFQADRSVVGLAREVRSKQASLEKYEEAMQCHLGD 595
Query: 692 DAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 749
+ E L++EL A ++ ++ RRR R +A+K+ L D G
Sbjct: 596 ---------------FAEYLTLRKELTAAEKSGSQGRRRA---RLAAVKESLADLAVG 635
Score = 43.5 bits (101), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 7/142 (4%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 1067
GE I GE +L+ ++VL++ L P + AAV A LV +G + + P+
Sbjct: 822 GEALRRIYGERDLFTSLVLQDPATDGLTPEEWAAVAALLVYQG---KGETEPGLVPMPTP 878
Query: 1068 TVINVINVLD--EHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALD 1125
+ V + E R E Q + +E D + W G T R + L
Sbjct: 879 RLARVAEAAERIEERLRTDEAQAR--LEPTPPTDPGLVAPMHRWVRGATLRRTLEGADLA 936
Query: 1126 DGDLARLLRRTIDLLAQIPKLP 1147
GD R R+ ID+L Q+ +P
Sbjct: 937 AGDFVRWARQVIDVLDQLANVP 958
>gi|403725532|ref|ZP_10946615.1| putative helicase [Gordonia rhizosphera NBRC 16068]
gi|403204933|dbj|GAB90946.1| putative helicase [Gordonia rhizosphera NBRC 16068]
Length = 934
Score = 312 bits (800), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 187/488 (38%), Positives = 256/488 (52%), Gaps = 28/488 (5%)
Query: 146 MIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205
M +DE + FR+D+FQ + A G V+V APT +GKT++ E A + +
Sbjct: 1 MTRLDEFTARLAFRLDEFQHRACTALEGGHGVLVCAPTGAGKTIVGEFAVHLALTGGTKC 60
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
FYTTP+KALSNQK+ + G +VGLLTGD++IN +A +++MTTE+LRNM+Y
Sbjct: 61 FYTTPIKALSNQKYADLAAVHGATSVGLLTGDNSINPDAPVVVMTTEVLRNMIY------ 114
Query: 266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325
++ L + +V+DEVH+L+D RG VWEE+I++ EV+++ LSATV+NA+E WI
Sbjct: 115 ANSRALGGLTHVVMDEVHFLADRFRGAVWEEVILHLDPEVRVVSLSATVSNAEEFGDWIQ 174
Query: 326 QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
+ G T +I RPVPL+ + + + L D +EV P
Sbjct: 175 TVRGDTTVIVDEHRPVPLSQHMLVGSRMFDLFDP-------AAPPGPAGPRRAEVNP--- 224
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
+R R +N ++ P D + L +LPAI
Sbjct: 225 --ELKRYIRNRILLNDGRDDRRR-GRDGQAGRGAGRGGTRPPSRPDLVARLDREGLLPAI 281
Query: 446 WFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPAI------KG 497
FIF+R GCD A++ +LL EM V+ + R I E + G
Sbjct: 282 GFIFSRAGCDGALKQCLRSGLSLLGPEEMDAVDEVVDRH-IADLSPADEDILGVAEWRAG 340
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
L +G AAHHAG LP ++ +EELF GLVK+VFATETLA GINMPART VL L K
Sbjct: 341 LRRGFAAHHAGLLPTFRHAVEELFTHGLVKMVFATETLALGINMPARTVVLERLVKYNGE 400
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
+ LT E Q+ GRAGRRGID GH V+V TP E+ L A PL S F Y
Sbjct: 401 AHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWTPEAVPEQVAGLAGARTFPLRSSFQPEY 460
Query: 618 GMVLNLLA 625
M +NL+
Sbjct: 461 NMAVNLIG 468
>gi|359766906|ref|ZP_09270702.1| putative helicase [Gordonia polyisoprenivorans NBRC 16320]
gi|359315786|dbj|GAB23535.1| putative helicase [Gordonia polyisoprenivorans NBRC 16320]
Length = 950
Score = 312 bits (800), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 202/526 (38%), Positives = 284/526 (53%), Gaps = 53/526 (10%)
Query: 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209
D + DFR+D FQ + A G V+V APT +GKT++ E A +A+ + FYTT
Sbjct: 23 DTFVARLDFRLDDFQIRACHALESGHGVLVCAPTGAGKTIVGEFAVHLALASGSKCFYTT 82
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSES 269
P+KALSNQK+ + G +VGLLTGD++IN +A +++MTTE++RNM+Y ++
Sbjct: 83 PIKALSNQKYADLVAVHGAASVGLLTGDTSINSDAPVVVMTTEVVRNMIY------ANSP 136
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
L + +V+DEVH+L+D RG VWEE+I++ V+++ LSATV+NA+E WI + G
Sbjct: 137 ALNGLSHVVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLSATVSNAEEFGEWIQTVRG 196
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
T +I RPVPLT + + L L D +G + + +N E+K +
Sbjct: 197 DTTVIVDDHRPVPLTQHMLVGSRLFDLFDSRGAAGDHRPKVN------PELKRFI----- 245
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
+H + ++ + + R QV + L +LPAI FIF
Sbjct: 246 -----RHRMLLDDDDDQRGRRGRGRPRRKPGPPRPQV------VARLEKEGLLPAIGFIF 294
Query: 450 NRRGCDAAV-QYLED-CNLLDECEMSEV---------ELALKRFRILYPDAVREPAIKGL 498
+R GCD A+ Q L NLL +++ V EL+ +L D R GL
Sbjct: 295 SRAGCDGALAQCLRSGLNLLTPDQVAAVDDVVDRHLTELSPADADVLGVDEWR----AGL 350
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G AAHHAG LP ++ +EELF RGLV++VFATETLA GINMPAR+ VL L K
Sbjct: 351 RRGFAAHHAGLLPTFRHTVEELFVRGLVRMVFATETLALGINMPARSVVLERLVKFNGEA 410
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+ L+ E Q+ GRAGRRGID GH V+V +P E+ L A PL S F Y
Sbjct: 411 HVDLSPGEFTQLTGRAGRRGIDVEGHAVIVWSPELIPEQVAGLAGARTFPLRSSFAPEYN 470
Query: 619 MVLNL-----LAGAKVMHLSNESDDMKALQAGRS-LEEARKLVEQS 658
M +NL LAG++ L N S QA RS + +ARK+ E S
Sbjct: 471 MAVNLIGRLGLAGSR--DLLNRS--FAQFQADRSVVGQARKVDEMS 512
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 11/170 (6%)
Query: 1004 IFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIY 1063
+ P GE + I E++L + +R I L P LAAV A++V E + ++
Sbjct: 777 VTPTGEVLSRIYSESDLVVTECIRAGIWDKLSPPDLAAVVAAMVFESRRESYSGADAMSG 836
Query: 1064 EPS--TTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMD 1121
P+ T + + + + S ++ +H V D+ FS V W SG + E +
Sbjct: 837 NPALRTAIADTVGIW----RSVTAVESRHHVSPTREPDTGFSVAVSLWVSGRSLTEALAA 892
Query: 1122 CA-----LDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
L GD R R+ +DLL QI D L + A A + R
Sbjct: 893 AGERGHLLSPGDFVRWNRQVVDLLEQIRLCVGEDSPLARPARVAVGAIRR 942
>gi|290961699|ref|YP_003492881.1| helicase [Streptomyces scabiei 87.22]
gi|260651225|emb|CBG74347.1| putative helicase [Streptomyces scabiei 87.22]
Length = 949
Score = 312 bits (799), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 197/518 (38%), Positives = 280/518 (54%), Gaps = 54/518 (10%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214
+Y+F +D FQ + +A G V+V+APT SGKT++ E A + ++ FYTTP+KAL
Sbjct: 46 MYEFGLDPFQIEACQALESGKGVLVAAPTGSGKTIVGEFAVHLALEQGKKCFYTTPIKAL 105
Query: 215 SNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDV 274
SNQK+ + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + L +
Sbjct: 106 SNQKYSDLCRRYGADKVGLLTGDNSVNSDAPVVVMTTEVLRNMLY------AGSRTLLGL 159
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+V+DEVHYLSD RG VWEE+II+ P+ V ++ LSATV+NA+E W+ + G T++I
Sbjct: 160 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTDVI 219
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV-KP-YKDGGSRRRN 392
S RPVPL + + L +E G+ + ++ + +++ E +P Y+D RR
Sbjct: 220 VSEHRPVPLFQHVLAGRRMYDLFEE-GEGNRKAVNPDLTRMARMEASRPSYQD----RRR 274
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
R + + + + I P+VI+ L S +LPAI FIF+R
Sbjct: 275 GRAMREADRER----------ERRQRSRIWIPSRPEVIE---RLDSEGLLPAITFIFSRA 321
Query: 453 GCDAAVQYL--------EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 504
C+AAVQ +D N L + E A L+ E ++GL +G+AA
Sbjct: 322 ACEAAVQQCLYAGLRLNDDENRLKVRALVEERTASIPHEDLHVLGYYE-WLEGLERGIAA 380
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HHAG LP +K +EELF RGLVK VFATETLA GINMPAR+ VL L K +T
Sbjct: 381 HHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITP 440
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E Q+ GRAGRRGID GH V++ + L PL S F SY M +NL+
Sbjct: 441 GEYTQLTGRAGRRGIDVEGHAVVLWQRGLSPDHLAGLAGTRTYPLRSSFKPSYNMAVNLV 500
Query: 625 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
Q GR +R+L+E SF +
Sbjct: 501 E-----------------QFGR--HRSRELLETSFAQF 519
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 93/218 (42%), Gaps = 16/218 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RLK + +L +RIE + + F RI ++ E L + + G+ A + G
Sbjct: 731 ERYYRLKRDTAQLERRIEGRTNTIARTFDRIVALLTELDYLRADE--VTEHGKRLARLYG 788
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTT-------V 1069
E +L + LR + L PA+LAA ++LV E R + + PS +
Sbjct: 789 ELDLLASECLRAGVWEGLGPAELAACVSALVYE---ARAADDAMAPKLPSGNAKAALGEM 845
Query: 1070 INVINVLDEHRSSFLELQ-EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 1128
+ + LD F Q E G P D F+ WASG E++ + + GD
Sbjct: 846 VRIWGRLDALEEEFRITQSEGVGQREP---DLGFAWAAYMWASGSGLDEVLREVEMPAGD 902
Query: 1129 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
R ++ ID+L QI + KNA A + + R
Sbjct: 903 FVRWCKQVIDVLGQISAAAPAGSSVGKNARKAVDELLR 940
>gi|283456049|ref|YP_003360613.1| helicase [Bifidobacterium dentium Bd1]
gi|283102683|gb|ADB09789.1| Helicase [Bifidobacterium dentium Bd1]
Length = 868
Score = 312 bits (799), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 223/645 (34%), Positives = 324/645 (50%), Gaps = 99/645 (15%)
Query: 119 PAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVV 178
P+PS R Q K F M F +D FQ + EA S+V+
Sbjct: 23 PSPSQRYAMFKQTQRKQGMAATRFAQSM----------PFELDDFQMEANEALEADSNVL 72
Query: 179 VSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDS 238
V+APT +GKT++A+ A + FYTTP+KALSNQK+ + + +G + VGLLTGD+
Sbjct: 73 VAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKALSNQKYHDLVDQYGQDRVGLLTGDT 132
Query: 239 AINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII 298
+IN EA I++MTTE+LRNMLY+ + + + ++LDEVHYL+D RG VWEE+I
Sbjct: 133 SINSEADIVVMTTEVLRNMLYEHSMTLEA------LRYVILDEVHYLADRFRGPVWEEVI 186
Query: 299 IYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF------STKTA 352
I+ P+ V+II LSATV+N ++ + WI + G T+LI S +RPVPL + T+
Sbjct: 187 IHLPQSVKIIGLSATVSNVEDFSNWIVSVRGDTKLIVSEKRPVPLEQHVLVQADDRTEPE 246
Query: 353 LLPLLDEKGKHMNRKLSLNYL---QLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFG 409
L+ L + H ++ + LN +L + + + G++R RK +
Sbjct: 247 LIDLY-RRDAHGDQTVKLNAQLLNRLDQLDRQAARRQGAQRPERRKGKGKGPWH------ 299
Query: 410 QHQLSKNSINAIRRSQVPQ---VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL 466
+ S + + R P+ V+D L L DMLP I+FIF+R GCD AV+ + L
Sbjct: 300 ----DRESSHKVER-HTPKRWAVVDELNFL---DMLPGIYFIFSRNGCDQAVEQCINAGL 351
Query: 467 --------------LDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPI 512
+D EM + +L+ + + L+ R L +G A HHAG + +
Sbjct: 352 ELTSNGEVRRIRRIVD--EMIDGQLSQEDLKALHFSQFR----FALEEGFAPHHAGMIAL 405
Query: 513 WKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAG 572
++ +E LF+ GLVKVVFATETLA GINMPAR V+ L K +G + LT E Q+ G
Sbjct: 406 FRQIVERLFEEGLVKVVFATETLALGINMPARCVVVEKLEKYDGTGHVGLTPGEFTQLTG 465
Query: 573 RAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 628
RAGRRGID GH V+V P A K ++ PL S F ++ M +NLL
Sbjct: 466 RAGRRGIDTIGHAVVVDHRGFVPATAAALSSKRVY----PLHSSFRPTFNMAVNLL---- 517
Query: 629 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD----V 684
N SD E AR ++ SF + + + ++ ++K +
Sbjct: 518 -----NSSD----------YETARITLDHSFAQWEANESAWQLEAQMDTLKKALEGYEHA 562
Query: 685 LTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRR 729
T E D A + R LSE E L+ E+ FRT+ R
Sbjct: 563 FTCEFGDFADFMRLRMRLSELEKNERRRLKHEV-----FRTQSER 602
>gi|389864289|ref|YP_006366529.1| helicase helY [Modestobacter marinus]
gi|388486492|emb|CCH88044.1| putative helicase helY [Modestobacter marinus]
Length = 950
Score = 312 bits (799), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 217/595 (36%), Positives = 292/595 (49%), Gaps = 66/595 (11%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + EA GS V+V APT +GKT++ E A + R+ FYTTP+KALSNQ
Sbjct: 29 FSLDPFQVEACEALEEGSGVLVCAPTGAGKTVVGEFAVHKALQEGRKAFYTTPIKALSNQ 88
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + + +G VGLLTGD+AIN +A +++MTTE+LRNMLY + L D+ +
Sbjct: 89 KYSDLCDRYGAAKVGLLTGDNAINGDAPVVVMTTEVLRNMLY------ADAPALTDLGYV 142
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVHYL+D RG VWEE+II+ P+ V+++ LSATV+NA+E A W+ + G T+++ S
Sbjct: 143 VMDEVHYLADRFRGAVWEEVIIHLPEHVRLVSLSATVSNAEEFADWLVTVRGDTKVVVSE 202
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE-----VKP----YKDGGS 388
RP+PL + + L + + LST E V P Y
Sbjct: 203 VRPIPLWQHMLVGGRVFDLFALRPAAHAGEWEQTPRGLSTRERGRAVVDPELVRYVHEQE 262
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
RR +S H S + I R L +LPAI F+
Sbjct: 263 RRHDS-WHGGGGSGIRGGGNRPRYRPPSRPEVIER------------LDRAGLLPAITFV 309
Query: 449 FNRRGCDAAV-QYL-EDCNLLDECEMSEVELALKRFRILYPD---------AVREPAIKG 497
F+R GCDAAV Q L L DE E S + + R P+ RE G
Sbjct: 310 FSRNGCDAAVGQCLASGMRLTDEVERSAIAEVIDRRTGSLPEEDLHVLGFWEWRE----G 365
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
LL G AAHHAG +P +K +EE F RGLVK VFATETLA GINMPART VL L K
Sbjct: 366 LLAGFAAHHAGLVPAFKETVEECFVRGLVKAVFATETLALGINMPARTVVLEKLVKWNGE 425
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
+T E Q+ GRAGRRGID GH V+V P L PL S F SY
Sbjct: 426 AHADVTPGEYTQLTGRAGRRGIDIEGHAVVVWAPGVDPAVVAGLASTRTYPLRSSFRPSY 485
Query: 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCK 677
M +NL+ GR + AR+L+ SF + ++ +
Sbjct: 486 NMAVNLVGA-----------------FGR--DRARELLASSFAQFQADRSVVGLARSAAR 526
Query: 678 IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 732
+++ L E++D S +L A Y + E + E T+ RRR +
Sbjct: 527 HEEDAARLAKEMNDGL----SAAVLDVAGYARLRMEVSEREKELSRDTQARRRAD 577
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 62/156 (39%), Gaps = 15/156 (9%)
Query: 1001 TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNS 1060
+ V+ G + I E +L A +R + L A+LAA ++LV E
Sbjct: 777 SPVVTDAGRRLSRIWSETDLLTAECIRAGVFRGLNAAELAACVSALVFEA-------RRE 829
Query: 1061 SIYEPSTTVINVINVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWRE 1117
PS V L E R L+L + +H V + LD F WA G T
Sbjct: 830 GPGTPSVPAGKVSAALAEMRRVQLQLADVEREHEVPVTRELDLGFVWAAYRWADGQTLDR 889
Query: 1118 MMMDCA-----LDDGDLARLLRRTIDLLAQIPKLPD 1148
++ L GD R R+ +DLL Q+ K+ D
Sbjct: 890 VLAGAEQAGTELSGGDFVRWARQLVDLLDQLAKVAD 925
>gi|399988198|ref|YP_006568548.1| ATP-dependent DNA helicase HelY [Mycobacterium smegmatis str. MC2
155]
gi|399232760|gb|AFP40253.1| ATP-dependent DNA helicase HelY [Mycobacterium smegmatis str. MC2
155]
Length = 914
Score = 312 bits (799), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 207/615 (33%), Positives = 301/615 (48%), Gaps = 96/615 (15%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + +A G V+V APT +GKT++ E A +A+ + FYTTP+KALSNQ
Sbjct: 21 FTLDDFQVRACQALENGHGVLVCAPTGAGKTIVGEFAVHLALASGGKCFYTTPIKALSNQ 80
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K + +G +GLLTGD +IN +A +++MTTE+LRNMLY ++ L + +
Sbjct: 81 KHNDLVARYGAEKIGLLTGDQSINGDADVVVMTTEVLRNMLY------ANSQALHGLSYV 134
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVH+L+D RG VWEE+I++ P EV ++ LSATV+NA+E GWI + G T ++
Sbjct: 135 VMDEVHFLADRMRGAVWEEVILHLPDEVLLVSLSATVSNAEEFGGWIQTVRGDTTVVVDE 194
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RPVPL+ + L L + + L ++ S RR + +
Sbjct: 195 HRPVPLSQHMMVGKRLFDLFERSSSTLVDPELLRHI--------------SHRREADRLM 240
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAA 457
D + R P+VI L +LPAI F+F+R GCDAA
Sbjct: 241 DWQPRG--------RGRGGRPQFYRPPGRPEVITA---LDDAGLLPAITFVFSRAGCDAA 289
Query: 458 VQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI----------------KGLLKG 501
V+ +C S + L + R + V +GLL+G
Sbjct: 290 VK---------QCLRSSLRLTTREERARIAEIVDRRCSDLNESDLIVLDYHEWREGLLRG 340
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART VL L K +
Sbjct: 341 LAAHHAGMLPTFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHLP 400
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE-----PLVSQFTAS 616
LT E Q+ GRAGRRGID GH V++ P + E ++ AG+ PL S F S
Sbjct: 401 LTPGEYTQLTGRAGRRGIDVEGHAVVLWRPDDSTAEPAEV--AGLASTRTFPLRSSFAPS 458
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELC 676
Y M +NL V H+ ++A +L+E+SF Y ++ +
Sbjct: 459 YNMTINL-----VQHMGP--------------QQAHELLERSFAQYQADRSVVGLVRGIR 499
Query: 677 KIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRF 736
+ ++ L +EI ++A + A L+ ++ +R ++ R L+R
Sbjct: 500 RGERMLGELAAEIGG-----------KDSAVIDYARLRAKIGERERAQSRASR---LQRR 545
Query: 737 SALKDILKDFENGHL 751
A D L D G +
Sbjct: 546 RAATDALADLRKGDI 560
>gi|301627725|ref|XP_002943020.1| PREDICTED: helicase SKI2W [Xenopus (Silurana) tropicalis]
Length = 1249
Score = 312 bits (799), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 209/567 (36%), Positives = 296/567 (52%), Gaps = 62/567 (10%)
Query: 82 DDDDDEEAADEYDDVSGE--VSDEIQQSD--DEFEVSSDSSP--APSWRE-EFKWQRVEK 134
D DDEEA ++ E ++ +Q+S+ +E + + SSP AP E E ++
Sbjct: 227 DSSDDEEAGEKRSGAGTERTKTEGLQRSNSLEELGLETKSSPVLAPVLPEAEVPHEQWAV 286
Query: 135 LCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAA 194
+ N + +LA + F +D FQ+ +I+ GSSV ++A TS+GKT++AE A
Sbjct: 287 PLDSNSPVANFYKQIPDLAFKHPFELDPFQKKAIQCLEAGSSVFIAAHTSAGKTVVAEYA 346
Query: 195 AVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEIL 254
++ + R YT+P+KALSNQKFR+F+ TFGD VGL+TGD + A LIMTTEIL
Sbjct: 347 IALSLKHMTRAIYTSPIKALSNQKFRDFKITFGD--VGLITGDVQLYTGASCLIMTTEIL 404
Query: 255 RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATV 314
R+MLY ++ D++ ++ DEVHY++D RG VWEE++I P V II LSATV
Sbjct: 405 RSMLYNGSDVIR------DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVNIILLSATV 458
Query: 315 ANADELAGWIGQI-HGKTELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRK 367
N E A WIG+I K +I+++RRPVPL Y T+ LLD G +
Sbjct: 459 PNTVEFADWIGRIKKKKIYVISTTRRPVPLEHYLYTGNSQKTQNQFFLLLDALGGFQTKG 518
Query: 368 LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 427
Y +++ S K++ +FG +K+
Sbjct: 519 Y--------------YAAVEAKKERSSKYSQ--------TFG----AKHPHGVGPGHDKG 552
Query: 428 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL----ALKRFR 483
+ + L+ RD LP + F F+R C+ L +L E SEV+ L R R
Sbjct: 553 TWLSLVQSLKIRDALPVVVFTFSRTRCEQNATALSTVDLCSTAEKSEVQTYYTKCLSRLR 612
Query: 484 ILYPDAVRE-PAIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 538
A R+ P + +L +G+ HH+G LPI K +E LF RGLVK++FATET A G
Sbjct: 613 ----GADRQLPQVLHMLDLLKRGIGIHHSGILPILKEVVEMLFSRGLVKILFATETFAMG 668
Query: 539 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEE 597
+NMPART V S+ K S LT E QMAGRAGRRG+DN G V +L + +
Sbjct: 669 VNMPARTVVFDSIRKHDGSNFRDLTPGEYIQMAGRAGRRGLDNTGMVIILCKADVPEMSD 728
Query: 598 CCKLLFAGVEPLVSQFTASYGMVLNLL 624
K++ L SQF +Y M+LNLL
Sbjct: 729 LHKMMLGKPTQLQSQFRLTYSMILNLL 755
>gi|358056951|dbj|GAA97301.1| hypothetical protein E5Q_03979 [Mixia osmundae IAM 14324]
Length = 1184
Score = 311 bits (798), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 188/496 (37%), Positives = 267/496 (53%), Gaps = 26/496 (5%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V ++A Y F +D FQ+ ++ +G SV +A TS+GKT++AE A + R YT
Sbjct: 223 VPDMAKEYPFELDTFQKEAVYHLEQGDSVFCAAHTSAGKTVLAEYAIALAQQHMTRAIYT 282
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+F++ FG NVG+LTGD +N EA LIMTTEILR+MLY+ ++
Sbjct: 283 SPIKALSNQKFRDFKQVFGAENVGILTGDVQVNPEASCLIMTTEILRSMLYKGADLIR-- 340
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D+ RG VWEE+II P + +I LSATV N E AGW+G+
Sbjct: 341 ----DVEWVIFDEVHYVNDLERGVVWEEVIIMLPDHIGVILLSATVPNTKEFAGWVGRTK 396
Query: 329 GK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
K +I++ +RPVPL + L ++D G + L + K + G
Sbjct: 397 RKDIYVISTLKRPVPLEHFLYAGRDLFKIVDSTGTFNGQGWKDAQQALKRKQEKEREAAG 456
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI-------DTLW-----H 435
+R V + Q + +A + P+ I LW
Sbjct: 457 LPAPGARGRGARGGTRGVGIVQRGQALGGASSARPAALAPRPIRPGPGADRNLWVHLVGS 516
Query: 436 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF--RILYPDAVREP 493
LR RD+LPA+ F F+++ C+ + + +L E SE+ L ++R R+ D
Sbjct: 517 LRQRDLLPAVIFTFSKKRCEENALSMPNTDLCTATEKSEIHLVVERSLGRLQEIDRTLPQ 576
Query: 494 AIKG---LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
+K L KG+ HH G LPI K +E LF RGLVK++FATET A G+NMPAR V +S
Sbjct: 577 ILKVRSLLSKGIGVHHGGLLPIVKEIVEILFARGLVKILFATETFAMGVNMPARCVVFAS 636
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE--ECCKLLFAGVEP 608
K L + E QMAGRAGRRG+D G V++V E E + K++
Sbjct: 637 TRKHDGRTFRDLLAGEYTQMAGRAGRRGLDATGCVIIVCNEAEPPETSDLHKMILGQPSK 696
Query: 609 LVSQFTASYGMVLNLL 624
L SQF +Y M+LNLL
Sbjct: 697 LTSQFRLTYSMILNLL 712
>gi|377563327|ref|ZP_09792678.1| putative helicase [Gordonia sputi NBRC 100414]
gi|377529575|dbj|GAB37843.1| putative helicase [Gordonia sputi NBRC 100414]
Length = 934
Score = 311 bits (798), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 197/534 (36%), Positives = 275/534 (51%), Gaps = 71/534 (13%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
+ D A+ F +D+FQR + A G V+V APT +GKT++ E A +A + FY
Sbjct: 7 EFDRFAASLSFELDEFQRLACRALEDGQGVLVCAPTGAGKTIVGEFAVHLALAAGTKCFY 66
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK+ + G NVGLLTGDS+IN +A +++MTTE++RNM+Y ++
Sbjct: 67 TTPIKALSNQKYADLVAVHGRQNVGLLTGDSSINSDAPVVVMTTEVVRNMIY------AN 120
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
L + +V+DEVH+L+D RG VWEE+I+ V+++ LSATV+NA+E WI +
Sbjct: 121 SPALQGLSHVVMDEVHFLADRFRGAVWEEVILGLDPSVRVVSLSATVSNAEEFGDWIQTV 180
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G+ +I RPVPL + + L L D ++DGG
Sbjct: 181 RGEVTVIVDEHRPVPLQQHMLVGSRLFDLFDS-----------------------HRDGG 217
Query: 388 SRRRNSR-----KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT---LWHLRSR 439
+ N +H + ++ + G + S R + P + + L
Sbjct: 218 KPQVNPELKRYIRHRMLLADERDSGRGHDRRSGRGRPRSTRGRGPGALSRPQLVARLDRE 277
Query: 440 DMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRF---------RILYPD 488
+LPAI FIF+R GCDAA+ Q L +LL E S V+ + R +L D
Sbjct: 278 GLLPAIGFIFSRVGCDAALAQCLRSGLSLLTPEESSAVDEVIDRHLTEIAPGDADVLGVD 337
Query: 489 AVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
R GL +G AAHHAG LP ++ +EELF RGLV++VFATETLA GINMPAR+ VL
Sbjct: 338 EWR----AGLQRGFAAHHAGLLPTFRHTVEELFVRGLVRMVFATETLALGINMPARSVVL 393
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
L K + LT E Q+ GRAGRRGID GH V+V TP E+ L A P
Sbjct: 394 ERLVKFNGESHVDLTPGEFTQLTGRAGRRGIDVEGHAVVVWTPELVPEQVAGLAGARTFP 453
Query: 609 LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
L S F Y M +NL+ R L +R+L+ +SF +
Sbjct: 454 LRSSFAPEYNMAVNLI-------------------GRRGLAGSRELLNRSFAQF 488
Score = 47.8 bits (112), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 7/146 (4%)
Query: 1003 VIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSI 1062
V+ P G+ + I E++L + +R I L P QLAAV A++V E R +
Sbjct: 760 VVTPTGQLLSRIYSESDLLVTECIRAGIWDRLGPPQLAAVIAAMVFE--SRRDSHAGADA 817
Query: 1063 YEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC 1122
+ + I + +++ +HGV D+ FS V WASG + E +
Sbjct: 818 MPGNVELRTAIAATLDIWCQVTDVERRHGVSPTREPDTGFSVAVSLWASGRSLTESLAAA 877
Query: 1123 A-----LDDGDLARLLRRTIDLLAQI 1143
L GD R R+ +DLL Q+
Sbjct: 878 GERGTLLSPGDFVRWNRQVVDLLEQV 903
>gi|441211108|ref|ZP_20974824.1| putative helicase helY [Mycobacterium smegmatis MKD8]
gi|440626355|gb|ELQ88185.1| putative helicase helY [Mycobacterium smegmatis MKD8]
Length = 912
Score = 311 bits (798), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 207/615 (33%), Positives = 301/615 (48%), Gaps = 96/615 (15%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + +A G V+V APT +GKT++ E A +A+ + FYTTP+KALSNQ
Sbjct: 19 FTLDDFQVRACQALENGHGVLVCAPTGAGKTIVGEFAVHLALASGGKCFYTTPIKALSNQ 78
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K + +G +GLLTGD +IN +A +++MTTE+LRNMLY ++ L + +
Sbjct: 79 KHNDLVARYGAEKIGLLTGDQSINGDADVVVMTTEVLRNMLY------ANSQALHGLSYV 132
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVH+L+D RG VWEE+I++ P EV ++ LSATV+NA+E GWI + G T ++
Sbjct: 133 VMDEVHFLADRMRGAVWEEVILHLPDEVLLVSLSATVSNAEEFGGWIQTVRGDTTVVVDE 192
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RPVPL+ + L L + + L ++ S RR + +
Sbjct: 193 HRPVPLSQHMMVGKRLFDLFERSSSTLVDPELLRHI--------------SHRREADRLM 238
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAA 457
D + R P+VI L +LPAI F+F+R GCDAA
Sbjct: 239 DWQPRG--------RGRGGRPQFYRPPGRPEVITA---LDDAGLLPAITFVFSRAGCDAA 287
Query: 458 VQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI----------------KGLLKG 501
V+ +C S + L + R + V +GLL+G
Sbjct: 288 VK---------QCLRSSLRLTTREERARIAEIVDRRCSDLNESDLIVLDYHEWREGLLRG 338
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART VL L K +
Sbjct: 339 LAAHHAGMLPTFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHLP 398
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE-----PLVSQFTAS 616
LT E Q+ GRAGRRGID GH V++ P + E ++ AG+ PL S F S
Sbjct: 399 LTPGEYTQLTGRAGRRGIDVEGHAVVLWRPDDSTAEPAEV--AGLASTRTFPLRSSFAPS 456
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELC 676
Y M +NL V H+ ++A +L+E+SF Y ++ +
Sbjct: 457 YNMTINL-----VQHMGP--------------QQAHELLERSFAQYQADRSVVGLVRGIR 497
Query: 677 KIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRF 736
+ ++ L +EI ++A + A L+ ++ +R ++ R L+R
Sbjct: 498 RGERMLGELAAEIGG-----------KDSAVIDYARLRAKIGERERAQSRASR---LQRR 543
Query: 737 SALKDILKDFENGHL 751
A D L D G +
Sbjct: 544 RAATDALADLRKGDI 558
>gi|297560479|ref|YP_003679453.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296844927|gb|ADH66947.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 950
Score = 311 bits (798), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 199/563 (35%), Positives = 286/563 (50%), Gaps = 53/563 (9%)
Query: 143 GNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ 202
G+ ++ +Y F D FQ + +A G V+V+APT SGKT++ E A +
Sbjct: 16 GSSSAAIEAFQGLYGFEFDPFQIRACKALENGHGVLVAAPTGSGKTVVGEFAVHLALGEG 75
Query: 203 RRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSV 262
+ FYTTP+KALSNQK+ + + +G + VGLLTGD+++N EA +++MTTE+LRNMLY+
Sbjct: 76 TKCFYTTPIKALSNQKYNDLVKRYGADQVGLLTGDNSVNGEAPVVVMTTEVLRNMLYE-- 133
Query: 263 GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAG 322
S L + +V+DEVHYL+D RG VWEE+II+ P+ V+++ LSATV+NA+E
Sbjct: 134 ----GSSTLGGLAYVVMDEVHYLADRFRGAVWEEVIIHLPESVRMVALSATVSNAEEFGE 189
Query: 323 WIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL---------------DEKGKHMNRK 367
W+ Q+ G T +I +RPVPL + + L + +G K
Sbjct: 190 WLQQVRGDTTVIVDEKRPVPLWQHVMVGNRVHDLFVDMEEDTGPGSGDGEEREGSTGRAK 249
Query: 368 LSLNYLQLSTSEVKPYKDGGSRRR-NSRKHADMNSNNIVTSFG---QHQLSKNSINAIRR 423
+ + + + GG + R N R ++ +T +H S+ N R
Sbjct: 250 KRRRERRRQGWQPREIEVGGQKLRINPRLTRFAEEDSRITQLANRRRHPQSRARGNVRPR 309
Query: 424 SQV--PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDEC--EMSEV-ELA 478
S+ P + L +LPAI FIF+R GCD AV+ L+ E E+ E A
Sbjct: 310 SRFAPPSRPTIIEELDDDGLLPAITFIFSRAGCDDAVRQCLAAGLVLTTPEEADEIREYA 369
Query: 479 LKRFRILYPDAVR----EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 534
R + P + E ++ L G+++HHAG LP +K +E LF RGL++ VFATET
Sbjct: 370 ETRCADIPPADLAVLGFEQWLRALEAGISSHHAGMLPTFKEIVEHLFSRGLIRAVFATET 429
Query: 535 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 594
LA GINMPART V+ L K QLT E Q+ GRAGRRGID GH V+V
Sbjct: 430 LALGINMPARTVVIEKLDKWNGETHAQLTPGEYTQLTGRAGRRGIDVEGHAVVVWQAGTD 489
Query: 595 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 654
E L PL S F SY M +NL+ Q GR + +R +
Sbjct: 490 PESVASLAGTRTYPLNSSFQPSYNMAVNLVG-----------------QVGR--QRSRNM 530
Query: 655 VEQSFGNYVGSNVMLAAKDELCK 677
+E SF + ++ +L K
Sbjct: 531 LEASFAQFQADRAVVGLVKQLRK 553
Score = 44.3 bits (103), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 6/187 (3%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL+ + L +R+E + F R+ V+ + L+ ++ + G A +
Sbjct: 739 ERYFRLRRETDGLRRRVEGRSHVISRTFDRVCGVLDDLGYLEEDS--VSDDGSRLAKVYS 796
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E +L +A LR + L P +LAA ASLV E + +++ P V + +
Sbjct: 797 ELDLLVAECLRRGLWKGLTPVELAACAASLVYEARR----GDDAYPRLPGGRVDETLAEM 852
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 1136
E++ +H V D F WA G ++ + GD R +
Sbjct: 853 VRLWGELSEVESRHRVSFLRQPDLGFVWTAHRWAGGDRLDAILRQADMPAGDFVRTAKML 912
Query: 1137 IDLLAQI 1143
+D+L QI
Sbjct: 913 VDMLGQI 919
>gi|118470951|ref|YP_888176.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
gi|118172238|gb|ABK73134.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
Length = 912
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 207/615 (33%), Positives = 301/615 (48%), Gaps = 96/615 (15%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + +A G V+V APT +GKT++ E A +A+ + FYTTP+KALSNQ
Sbjct: 19 FTLDDFQVRACQALENGHGVLVCAPTGAGKTIVGEFAVHLALASGGKCFYTTPIKALSNQ 78
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K + +G +GLLTGD +IN +A +++MTTE+LRNMLY ++ L + +
Sbjct: 79 KHNDLVARYGAEKIGLLTGDQSINGDADVVVMTTEVLRNMLY------ANSQALHGLSYV 132
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVH+L+D RG VWEE+I++ P EV ++ LSATV+NA+E GWI + G T ++
Sbjct: 133 VMDEVHFLADRMRGAVWEEVILHLPDEVLLVSLSATVSNAEEFGGWIQTVRGDTTVVVDE 192
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RPVPL+ + L L + + L ++ S RR + +
Sbjct: 193 HRPVPLSQHMMVGKRLFDLFERSSSTLVDPELLRHI--------------SHRREADRLM 238
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAA 457
D + R P+VI L +LPAI F+F+R GCDAA
Sbjct: 239 DWQPRG--------RGRGGRPQFYRPPGRPEVITA---LDDAGLLPAITFVFSRAGCDAA 287
Query: 458 VQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI----------------KGLLKG 501
V+ +C S + L + R + V +GLL+G
Sbjct: 288 VK---------QCLRSSLRLTTREERARIAEIVDRRCSDLNESDLIVLDYHEWREGLLRG 338
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART VL L K +
Sbjct: 339 LAAHHAGMLPTFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHLP 398
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE-----PLVSQFTAS 616
LT E Q+ GRAGRRGID GH V++ P + E ++ AG+ PL S F S
Sbjct: 399 LTPGEYTQLTGRAGRRGIDVEGHAVVLWRPDDSTAEPAEV--AGLASTRTFPLRSSFAPS 456
Query: 617 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELC 676
Y M +NL V H+ ++A +L+E+SF Y ++ +
Sbjct: 457 YNMTINL-----VQHMGP--------------QQAHELLERSFAQYQADRSVVGLVRGIR 497
Query: 677 KIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRF 736
+ ++ L +EI ++A + A L+ ++ +R ++ R L+R
Sbjct: 498 RGERMLGELAAEIGG-----------KDSAVIDYARLRAKIGERERAQSRASR---LQRR 543
Query: 737 SALKDILKDFENGHL 751
A D L D G +
Sbjct: 544 RAATDALADLRKGDI 558
>gi|227875392|ref|ZP_03993533.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
gi|227843946|gb|EEJ54114.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
Length = 810
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 192/523 (36%), Positives = 276/523 (52%), Gaps = 72/523 (13%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+DE +++DF D FQ + + G+ V+V+APTS+GKT++ + +R+FYT
Sbjct: 41 LDEFQAMFDFPFDDFQIAGCQVLDGGADVLVTAPTSAGKTIVGLYGIFLALRQGKRLFYT 100
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF E ++ FG ++VGLLTGD+ +N EA I++MTTE+LRNM+Y ++
Sbjct: 101 TPIKALSNQKFLELQQIFGSDSVGLLTGDTVVNGEADIIVMTTEVLRNMIY-------AK 153
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ L + +V+DEVHYLSD RG VWEEIII+ V+++ LSATV+N+ + A W+ +
Sbjct: 154 ADLSALGFVVMDEVHYLSDQFRGPVWEEIIIHLDPAVRLVYLSATVSNSRQFADWLETLR 213
Query: 329 GKTELITSSRRPVPLTWYFSTKTA-LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G T+++++S RPVPL + A + PL + + N LN L+ + K
Sbjct: 214 GPTKVVSTSTRPVPLEHFMVNHDAEIFPLFENQKTRGN----LNRALLAEAAQLLMK--- 266
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+ N + RR L+ +LPAI F
Sbjct: 267 -----------------RRGRFPRRQRANRVEIARR------------LQREGLLPAIQF 297
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI----LYPDAVREPAI----KGLL 499
IF+R GCDAA ++ L E +E E+ +R P+ + I + L
Sbjct: 298 IFSRAGCDAAATEVQRSGLRLTSE-AEAEIIRRRVETTLAGFNPEDLSASNIYAWEENLA 356
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
G+A+HHAG LPI K +E LF GLV++VFATETLA GINMPART VL +L+K S R
Sbjct: 357 AGIASHHAGLLPIQKQLVENLFADGLVRLVFATETLALGINMPARTVVLEALNKFNGSER 416
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
LT+ E Q+ GRAGRRGID G+ + V + L PL S F +Y M
Sbjct: 417 ANLTAGEYTQLTGRAGRRGIDTFGYALTVLDARNPPQVLASLAAGQSFPLHSAFAPNYNM 476
Query: 620 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
+NLL S + A++ VE+SF +
Sbjct: 477 AVNLLVRT-------------------SFDGAQRTVEKSFAQF 500
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 1006 PLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSSI 1062
P G + E +L + ++ + DL ++LA A +SE G RL N+S+
Sbjct: 646 PKGVMLQGVYNERDLLVVECVQRGLFTDLTVSELAGALAVCISENRGGGPSRLIPANASL 705
Query: 1063 YEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-MD 1121
+ + + +LQE H +E LD+ + V AWA G T E + +
Sbjct: 706 -----RLATALEAMARLNFDLAQLQESHLLEPYQPLDTGEALGVVAWAQGKTLTECLELG 760
Query: 1122 CALDDGDLARLLRRTIDLLAQIPKL--PDVDQRLQK 1155
+ GD R++R+ IDL Q+ ++ P QR Q+
Sbjct: 761 GGVGAGDFVRMVRQVIDLSNQLRQVVEPGSSQRFQQ 796
>gi|170582192|ref|XP_001896019.1| helicase [Brugia malayi]
gi|158596865|gb|EDP35135.1| helicase, putative [Brugia malayi]
Length = 1127
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 235/696 (33%), Positives = 344/696 (49%), Gaps = 95/696 (13%)
Query: 84 DDDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAPSWREEFKWQRVE----KLCNEV 139
+DD E A+E + S +++ + DE +P+ S ++E + Q E + N
Sbjct: 69 EDDSEGAEESHNESEIGKEQLVITLDEV------APSSSGKDELQVQNREYSYAHVLNTS 122
Query: 140 KEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATV 199
K + +A Y F +D FQ+ ++ RG SV V+A TS+GKT++AE A
Sbjct: 123 KNVDEYEVLKSNMARKYPFELDPFQQQAVVCLDRGDSVFVAAHTSAGKTVVAEYAVALCN 182
Query: 200 ANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLY 259
++ R YT+P+KALSNQKFREF+ F D VGL+TGD ++ EA LIMTTE+LR+MLY
Sbjct: 183 LHKTRAIYTSPIKALSNQKFREFKLIFQD--VGLITGDIQLHPEAFCLIMTTEVLRSMLY 240
Query: 260 QSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADE 319
++ +++ ++ DEVHY++D RG VWEE++I P +I+ LSATV N E
Sbjct: 241 NGSEVIR------ELEWVIFDEVHYINDAERGHVWEEVLIMLPAHAKIVMLSATVPNCVE 294
Query: 320 LAGWIGQIHGK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNY 372
A W+G+I K +I ++RRPVPL + TK + ++D G+ + + SL
Sbjct: 295 FADWVGRIKKKRIYVIMTARRPVPLEHFLYTGQDGKTKKDMFKIIDSCGQFVQKGYSLAS 354
Query: 373 -----LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 427
++ +++ V P G R NN + S+ ++ ++
Sbjct: 355 AAKANIRKASANVGPV---GYR-----------PNNKILSYLKNSYDDKNV--------- 391
Query: 428 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVE----LALKRFR 483
I + HLR ++MLP I F+F+RR CD L +L E E S + + R R
Sbjct: 392 -YITVIDHLRMQNMLPVIVFVFSRRRCDDNAYLLRSIDLTTEKEKSSIHHFFSRCIARLR 450
Query: 484 ILYPDAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 542
+ + +K L K G A HH+G LPI K +E LFQ+GLVKV+FATET A G+NMP
Sbjct: 451 GSDKNLPQVLQMKELCKHGFAIHHSGILPILKEVVELLFQKGLVKVLFATETFAMGVNMP 510
Query: 543 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPY-EGAEECCK 600
ART + SL K L E QMAGRAGRRG+D G V VL + PY +
Sbjct: 511 ARTVIFDSLQKHDGRQLRLLNPGEYIQMAGRAGRRGLDATGSVIVLCKGPYVPDYLDLVN 570
Query: 601 LLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFG 660
+ L S+F +Y M+LNLL +V HLS E ++ SL A
Sbjct: 571 CMQGKPTKLESRFRVTYSMLLNLL---RVEHLSVEDVLRRSYVESASLRLA--------- 618
Query: 661 NYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAE 720
+ L +EL ++K+ D T ++ + + E L+
Sbjct: 619 --LTQKARLKQTEELLLLKKDPDCTTCFPTEG---------------NSIVDYYENLRIF 661
Query: 721 KRFRTELRRRMELKRFSALKDILKDFENGHLPFLCL 756
R+R EL EL RFS L +L G L +CL
Sbjct: 662 IRYRAELWP--ELIRFSVLDKLLLP---GRLVIVCL 692
>gi|269977354|ref|ZP_06184327.1| probable helicase HelY [Mobiluncus mulieris 28-1]
gi|307700945|ref|ZP_07637970.1| DEAD/DEAH box helicase [Mobiluncus mulieris FB024-16]
gi|269934657|gb|EEZ91218.1| probable helicase HelY [Mobiluncus mulieris 28-1]
gi|307613940|gb|EFN93184.1| DEAD/DEAH box helicase [Mobiluncus mulieris FB024-16]
Length = 810
Score = 311 bits (797), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 192/523 (36%), Positives = 276/523 (52%), Gaps = 72/523 (13%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+DE +++DF D FQ + + G+ V+V+APTS+GKT++ + +R+FYT
Sbjct: 41 LDEFQAMFDFPFDDFQIAGCQVLDGGADVLVTAPTSAGKTIVGLYGIFLALRQGKRLFYT 100
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF E ++ FG ++VGLLTGD+ +N EA I++MTTE+LRNM+Y ++
Sbjct: 101 TPIKALSNQKFLELQQIFGSDSVGLLTGDTVVNGEADIIVMTTEVLRNMIY-------AK 153
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ L + +V+DEVHYLSD RG VWEEIII+ V+++ LSATV+N+ + A W+ +
Sbjct: 154 ADLSALGFVVMDEVHYLSDQFRGPVWEEIIIHLDPAVRLVYLSATVSNSRQFADWLETLR 213
Query: 329 GKTELITSSRRPVPLTWYFSTKTA-LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G T+++++S RPVPL + A + PL + + N LN L+ + K
Sbjct: 214 GPTKVVSTSTRPVPLEHFMVNHDAEIFPLFENQKTRGN----LNRALLAEAAQLLMK--- 266
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+ N + RR L+ +LPAI F
Sbjct: 267 -----------------RRGRFPRRQRANRVEIARR------------LQREGLLPAIQF 297
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI----LYPDAVREPAI----KGLL 499
IF+R GCDAA ++ L E +E E+ +R P+ + I + L
Sbjct: 298 IFSRAGCDAAATEVQRSGLRLTSE-AEAEIIRRRVETTLAGFNPEDLSASNIYAWEENLA 356
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
G+A+HHAG LPI K +E LF GLV++VFATETLA GINMPART VL +L+K S R
Sbjct: 357 AGIASHHAGLLPIQKQLVENLFADGLVRLVFATETLALGINMPARTVVLEALNKFNGSER 416
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
LT+ E Q+ GRAGRRGID G+ + V + L PL S F +Y M
Sbjct: 417 ANLTAGEYTQLTGRAGRRGIDTFGYALTVLDARNPPQVLASLAAGQSFPLHSAFAPNYNM 476
Query: 620 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
+NLL S + A++ VE+SF +
Sbjct: 477 AVNLLVRT-------------------SFDGAQRTVEKSFAQF 500
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 1006 PLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSSI 1062
P G + E +L + ++ + DL ++LA A +SE G RL N+S+
Sbjct: 646 PKGVMLQGVYNERDLLVVECVQRGLFTDLTVSELAGALAVCISENRGGGPSRLIPANASL 705
Query: 1063 YEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-MD 1121
+ + + +LQE H +E LD+ + V AWA G T E + +
Sbjct: 706 -----RLATALEAMARLNFDLAQLQESHLLEPYQPLDTGEALGVVAWAQGKTLTECLELG 760
Query: 1122 CALDDGDLARLLRRTIDLLAQIPKL--PDVDQRLQK 1155
+ GD R++R+ IDL Q+ ++ P QR Q+
Sbjct: 761 GGVGAGDFVRMVRQVIDLSNQLRQVVEPGSSQRFQQ 796
>gi|241959260|ref|XP_002422349.1| RNA helicase, putative; antiviral helicase ski2 homologue,
putative; superkiller protein 2 homologue, putative
[Candida dubliniensis CD36]
gi|223645694|emb|CAX40355.1| RNA helicase, putative [Candida dubliniensis CD36]
Length = 1233
Score = 311 bits (796), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 199/538 (36%), Positives = 286/538 (53%), Gaps = 79/538 (14%)
Query: 129 WQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKT 188
W V L +++++F E+ V +A + F +D FQ+ ++ +G SV V+A TS+GKT
Sbjct: 256 WAHVVDLDHKIEDF-QEL--VPNMARTWPFELDTFQKEAVFHLEQGDSVFVAAHTSAGKT 312
Query: 189 LIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILI 248
++AE A N + YT+P+KALSNQKFR+F+ETF D +VGL+TGD IN EA LI
Sbjct: 313 VVAEYAIAMAHRNMTKCIYTSPIKALSNQKFRDFKETFKDIDVGLITGDVQINPEANCLI 372
Query: 249 MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQII 308
MTTEILR+MLY+ ++ DV+ ++ DEVHY++DI RG VWEE+II P V+ I
Sbjct: 373 MTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPDHVKYI 426
Query: 309 CLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRK 367
LSATV N E A W+G+ K +I++ +RPVPL + S K L ++D NRK
Sbjct: 427 LLSATVPNTFEFANWVGRTKQKDIYVISTPKRPVPLEIFVSAKNQLFKVVD-----ANRK 481
Query: 368 LSLNYLQLSTSEVKPYKD--GGSRRRNSRKHADM-------------------------- 399
S N E + +KD G ++N M
Sbjct: 482 FSEN-------EFRKHKDFLEGGGKKNELPSTTMGSGSRGGPGGTARGGNRGGRGSRGGQ 534
Query: 400 ---NSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
NS+ FG+ KN+ ID + +++S ++LPA+ F+F+++ C+
Sbjct: 535 GRGNSSG-PKRFGRDGPKKNTW-----------IDLVNYMKSNNLLPAVVFVFSKKRCEE 582
Query: 457 AVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLP 511
L + + E SE+ + + R RE P I + L +G+A HH G LP
Sbjct: 583 YADSLRSVDFNNAREKSEIHMFIDRAVGRLKKEDRELPQILKIREMLGRGIAVHHGGLLP 642
Query: 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMA 571
I K IE LF + LVKV+FATET A G+N+P RT V SS+ K L E QM+
Sbjct: 643 IVKECIEILFAKSLVKVLFATETFAMGLNLPTRTVVFSSMRKHDGRSFRNLLPGEFTQMS 702
Query: 572 GRAGRRGIDNRGHVVLVQ-----TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
GRAGRRG+D G V+++ +P + E ++ L SQF +Y M+LNLL
Sbjct: 703 GRAGRRGLDKTGTVIVMAYNDPLSPTDFKE----VVLGTPTKLSSQFRLTYSMILNLL 756
Score = 40.4 bits (93), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 22/148 (14%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG---------IKVRLWKN 1058
G A + EL + ++ N L D +PA++ A+ + V EG I RL K
Sbjct: 1061 GRVACEVNSGWELIITELVLNNFLADFEPAEIVALLSCFVYEGRTQEEEPPLITPRLEKG 1120
Query: 1059 NSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQ---FSGMVEAWASGLTW 1115
+ I E + ++ V ++E Q E ++S+ + +V WA+GL++
Sbjct: 1121 KAKILEIAEKLLKV----------YVEKQVSLTSEEEDFVESKRFALANVVYEWANGLSF 1170
Query: 1116 REMMMDCALDDGDLARLLRRTIDLLAQI 1143
E+M +G + R++ R ++ ++
Sbjct: 1171 NEIMQISVEAEGTIVRVITRLDEICREV 1198
>gi|384495409|gb|EIE85900.1| hypothetical protein RO3G_10610 [Rhizopus delemar RA 99-880]
Length = 1100
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 186/494 (37%), Positives = 275/494 (55%), Gaps = 40/494 (8%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V E+A + F +D FQ+ ++ G SV ++A TS+GKT++A+ A + + YT
Sbjct: 186 VPEMAMQFPFELDTFQKHAVYHLEMGDSVFIAAHTSAGKTVVADYAIALATKHMTKAIYT 245
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+F+ TFGD+ VG+LTGD I EA L+MTTEILR+MLY+ ++
Sbjct: 246 SPIKALSNQKFRDFKHTFGDD-VGILTGDVQIKPEASCLVMTTEILRSMLYRGADLIR-- 302
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D+ RG VWEE+II P V II LSATV N E AGW+G+
Sbjct: 303 ----DVEFVIFDEVHYVNDLERGVVWEEVIIMLPAHVNIILLSATVPNTREFAGWVGRTK 358
Query: 329 GK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
K +I++ +RPVPL Y K + + + N L+LST+ K +D
Sbjct: 359 KKDIYVISTLKRPVPLEHYLYAN-----------KDIYKIVGANELKLSTAGYKKAQDAM 407
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSK------NSINAIRRSQVPQVIDTLWHLRSRDM 441
++R+ + + N+N G+ S +A ++ + + L+++ +
Sbjct: 408 TKRKEQIEKSSGNNNVRGGRGGRGGARGGGKPMGRSYHAAMQTDRNLFVHLIGMLKTKSL 467
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI-------LYPDAVREPA 494
LP + F F+++ C+ L +L E SE+ + ++R + P +R
Sbjct: 468 LPVVIFTFSKKRCEEYASGLSKTDLCTSLEKSEIHVFIERSLVRLRGSDKFLPQILR--- 524
Query: 495 IKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
++ LL +G+A HH+G LPI K +E LF RGLVKV+FATET A G+NMPAR V S + K
Sbjct: 525 MRDLLSRGIAVHHSGLLPIIKEIVEILFARGLVKVLFATETFAMGVNMPARCVVFSGIRK 584
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL---LFAGVEPLV 610
L E QM+GRAGRRG+D+ G VV++ T E E L + L
Sbjct: 585 HDGRSFRDLLPGEYTQMSGRAGRRGLDSTG-VVIIATGGEEPPEASTLSTMILGKPTKLE 643
Query: 611 SQFTASYGMVLNLL 624
SQF +Y M+LNLL
Sbjct: 644 SQFRLTYNMILNLL 657
>gi|383780514|ref|YP_005465080.1| helY putative ATP-dependent RNA helicase [Actinoplanes
missouriensis 431]
gi|381373746|dbj|BAL90564.1| helY putative ATP-dependent RNA helicase [Actinoplanes
missouriensis 431]
Length = 918
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 203/544 (37%), Positives = 272/544 (50%), Gaps = 67/544 (12%)
Query: 130 QRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTL 189
QR E + M+DV F +D FQR + E RG+ V+V APT +GKT+
Sbjct: 12 QRRAARVAEFPALEDFMLDVG-------FDLDDFQREACEVLERGNGVLVCAPTGAGKTV 64
Query: 190 IAE-AAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILI 248
+ E A +A + +R+ FYTTP+KALSNQK+ + +G + VGLLTGD+AIN +A +++
Sbjct: 65 VGEFAVHLALRSGERKCFYTTPIKALSNQKYNDLVARYGADKVGLLTGDNAINGDAPVVV 124
Query: 249 MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQII 308
MTTE+LRNMLY S L ++ +V+DEVHYL+D RG VWEE+II+ P V ++
Sbjct: 125 MTTEVLRNMLY------SGSDQLRNLAYVVMDEVHYLADRFRGAVWEEVIIHLPASVTLV 178
Query: 309 CLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL---DEKGKHMN 365
LSATV+N +E A W+ + GKTE++ S RPVPL + + L D KH
Sbjct: 179 SLSATVSNYEEFADWLVTVRGKTEVVVSEHRPVPLWQHMLVGRRMFDLFHDADAAKKHDV 238
Query: 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 425
L Y R + D+ RR Q
Sbjct: 239 HPELLRYT-----------------REMDRRLDLTDRAGSG-------WSGRGGRSRRWQ 274
Query: 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEV-ELALKRF 482
P + + L +LPAI FIF+R CDAAVQ L E +++ E+A +
Sbjct: 275 PPPRAEVVERLERAGLLPAILFIFSRAACDAAVQQCLAAGLRLTGPDERAQIREIAQAKV 334
Query: 483 RILYPDAVREPA----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 538
+ + + + GL +GVAAHHAG LP +K +EE F RGLVK VFATETLA G
Sbjct: 335 ANIPAEDLSVLGYWEWLDGLERGVAAHHAGMLPAFKEAVEECFVRGLVKAVFATETLALG 394
Query: 539 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 598
INMPAR VL L K + LT E Q+ GRAGRRGID GH V++ +P
Sbjct: 395 INMPARCVVLERLVKFNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVLWSPDVDPRHV 454
Query: 599 CKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQS 658
L PL S F SY M +NL+ E +R L+E S
Sbjct: 455 AGLASTRTYPLRSSFRPSYNMAVNLVGTVGA-------------------ERSRALLESS 495
Query: 659 FGNY 662
F +
Sbjct: 496 FAQF 499
>gi|389751297|gb|EIM92370.1| antiviral helicase [Stereum hirsutum FP-91666 SS1]
Length = 1240
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 211/605 (34%), Positives = 302/605 (49%), Gaps = 79/605 (13%)
Query: 73 AADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVS-SDSSPAPSWREEFKWQR 131
A +++DD+ D E A+ + D + + DD S + +P S R K
Sbjct: 190 AQHDFNDDVADGQIPEYANGHIDDFAPAAGPSSEIDDLLPTSRAQLNPVSSARRPIKRVN 249
Query: 132 VEK-----LCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSG 186
V+K + + K N V E+A Y F +D FQ+ ++ G SV V+A TS+G
Sbjct: 250 VQKRDWAHVVDINKPMKNFHTLVPEMAHKYPFELDTFQKEAVYHLEMGDSVFVAAHTSAG 309
Query: 187 KTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQI 246
KT++AE A + R YT+P+KALSNQKFR+F++TF ++VG+LTGD IN EA
Sbjct: 310 KTVVAEYAIALAEKHMTRAIYTSPIKALSNQKFRDFKQTFSSSSVGILTGDVQINPEANC 369
Query: 247 LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 306
LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P V
Sbjct: 370 LIMTTEILRSMLYKGADLIR------DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVN 423
Query: 307 IICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 365
II LSATV NA E A W+G+ K +I +++RPVPL Y G+ M+
Sbjct: 424 IILLSATVPNAKEFADWVGRTKKKDIYVIYTAKRPVPLEHYLWA-----------GREMH 472
Query: 366 RKLSL--NYLQLSTSEVKPYKDGGS--RRRN--SRKHADMNSNNIVTSFGQHQLSK---- 415
+ + N+L L YK+ G RR+ R+ A M V + G
Sbjct: 473 KIVDADRNFLGLG------YKEAGEALRRKQDKEREAAGMPPVQRVGARGAAPQRGGGQR 526
Query: 416 ------------------------------NSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
+ NA+ +S + L HLR + +LP +
Sbjct: 527 GGGRGAPTGRGGPARGGPREGGGGGGGGFTRTFNAVDKS---LYVHLLGHLRKKSLLPVV 583
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KGLL-K 500
F +++ C+ L + +L E SEV +A+++ + R+ P I + LL +
Sbjct: 584 VFTLSKKRCEENAGTLSNVDLSTAVERSEVHVAIEKAVSRLKGSDRKLPQIGRMRDLLSR 643
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+ HH G LPI K +E LF RGLVKV+FATET A G+NMPA+ V S + K
Sbjct: 644 GIGVHHGGLLPIVKEVVEILFARGLVKVLFATETFAMGVNMPAKCVVFSGIRKHDGKSFR 703
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE-PLVSQFTASYGM 619
+ E QMAGRAGRRG+D G V++V + + G L SQF +Y M
Sbjct: 704 DILPGEYTQMAGRAGRRGLDPTGTVIIVTNDNLPEQTTLNTMILGTPGKLNSQFRLTYNM 763
Query: 620 VLNLL 624
+LNLL
Sbjct: 764 ILNLL 768
>gi|159037970|ref|YP_001537223.1| DEAD/DEAH box helicase [Salinispora arenicola CNS-205]
gi|157916805|gb|ABV98232.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
CNS-205]
Length = 922
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 195/534 (36%), Positives = 266/534 (49%), Gaps = 74/534 (13%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAA-------AVATVAN 201
+DE A +D FQR + +A RGS V+V APT +GKT++ E A + A
Sbjct: 24 LDEFALDLGVDLDDFQREACQALERGSGVLVCAPTGAGKTVVGEFAVHLALRGGTSAPAQ 83
Query: 202 QRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS 261
+R+ FYTTP+KALSNQK+ + + G VGLLTGD+AIN +A +++MTTE+LRNMLY
Sbjct: 84 RRKCFYTTPIKALSNQKYHDLVDRHGAAQVGLLTGDNAINGDAPVVVMTTEVLRNMLY-- 141
Query: 262 VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELA 321
+ + L + +V+DEVHYL+D RG VWEE+II+ P V ++ LSATV+NA+E A
Sbjct: 142 ----AGSATLEGLAYVVMDEVHYLADRFRGGVWEEVIIHLPASVTLVSLSATVSNAEEFA 197
Query: 322 GWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
W+ + G+T ++ S RPVPL + + L + + L+ + ++
Sbjct: 198 DWLVTVRGETAVVVSEHRPVPLWQHMLVGRRMFDLFHDADAARKHDVHPELLRHTRDTLR 257
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
+ + + +R P ++D L +
Sbjct: 258 ----------------RLEPGEGRGAGPGGRRGPRWRGPMR----PDIVD---RLDREGL 294
Query: 442 LPAIWFIFNRRGCDAAVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA----- 494
LPAI FIF+R GCDAAVQ L E +E+ R++ P
Sbjct: 295 LPAILFIFSRAGCDAAVQQCLAAGLRLTGPEERAEIR------RVVESRITAIPGEDLSV 348
Query: 495 ------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
+ GL +G+AAHHAG LP +K +EELF RGLVK VFATETLA GINMPAR VL
Sbjct: 349 LGYWDWLDGLERGLAAHHAGMLPAFKEVVEELFVRGLVKAVFATETLALGINMPARCVVL 408
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
L K + LT E Q+ GRAGRRGID GH V+V +P L P
Sbjct: 409 ERLVKYNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWSPETDPRHVAGLASTRTYP 468
Query: 609 LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
L S F SY M +NL+ E AR L+E SF +
Sbjct: 469 LRSSFRPSYNMAVNLVGSVGA-------------------EPARALLESSFAQF 503
Score = 42.0 bits (97), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 15/217 (6%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ +RL+ ++ L +R+ S + F RI ++ R + G T + I
Sbjct: 705 ERRRRLEKDTEELRQRVAGRTGSLARTFDRIVALL-TARGYLAPDGAVTEAGRTLSRIWT 763
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E +L +A LR + L PA+LAA + +V E R +S+ P V +
Sbjct: 764 EADLLVAECLRRGVWGGLSPAELAAAVSVVVFEA--RRDLDERASL--PRGAVATAV--- 816
Query: 1077 DEHRSSFLELQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD----GDL 1129
DE + E++ G+ + D F+ V WA G ++++ +D GD
Sbjct: 817 DETLKLWGEIEADEAARGLAVTREPDLGFAWPVYRWARGEPLAKVLVSGHVDGEMPAGDF 876
Query: 1130 ARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
R R+ +DLL Q+ L+ NA A ++R
Sbjct: 877 VRWARQVVDLLGQLADSGGASAELRSNARQAITAVNR 913
>gi|229493571|ref|ZP_04387356.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|453069105|ref|ZP_21972373.1| helicase [Rhodococcus qingshengii BKS 20-40]
gi|229319532|gb|EEN85368.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|452764308|gb|EME22578.1| helicase [Rhodococcus qingshengii BKS 20-40]
Length = 903
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 202/598 (33%), Positives = 302/598 (50%), Gaps = 90/598 (15%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
++ AS F +D FQ + A G V+V APT +GKT++ E A +A R+ FY
Sbjct: 5 ELSTFASSLKFELDPFQVKACVALEAGHGVLVCAPTGAGKTVVGEFAVHLALAAGRKCFY 64
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK+ E E +G VGLLTGDS+IN +A +++MTTE+LRNMLY ++
Sbjct: 65 TTPIKALSNQKYAELVERYGPGEVGLLTGDSSINSDAPVVVMTTEVLRNMLY------AN 118
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
L + +V+DEVHYL+D RG VWEE+I++ ++V+++ LSATV+NA+E W+ +
Sbjct: 119 SEALRGLSHVVMDEVHYLADRFRGAVWEEVILHLSEDVRLVSLSATVSNAEEFGAWMETV 178
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKG----------------KHMNRKLSLN 371
G T ++ RP+PL + + L D + +H+ ++ +L
Sbjct: 179 RGDTTVVVDETRPIPLWQHIMVGRRIFDLFDSRSHPAAGPKTVLVDQDLVRHVKQRQALE 238
Query: 372 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 431
V+ ++ G RR S + S N + R D
Sbjct: 239 -------RVESWQPRGRGRRGSYQ------------------SSNDFRPLPRP------D 267
Query: 432 TLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPDA 489
+ L +LPAI FIF+R GCDAA+ Q L +L ++ E++ +++ P+
Sbjct: 268 VIAQLDQSGLLPAITFIFSRAGCDAALAQCLRSRLDLTSPEQVREIDTIIEKHTGELPEE 327
Query: 490 VREPA-----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 544
E K L +G+A+HHAG LP ++ +EELF +GLV+ VFATETLA GINMPAR
Sbjct: 328 DLEVLGYRDWCKALRRGLASHHAGMLPAFRQTVEELFVKGLVRAVFATETLALGINMPAR 387
Query: 545 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 604
T VL L K +LT E Q+ GRAGRRGID GH V++ P + L
Sbjct: 388 TVVLERLVKYNGESHAELTPGEYTQLTGRAGRRGIDVEGHAVVLWQPGVEPTDVAGLAST 447
Query: 605 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 664
PL S F SY M +NL+ + M A ++RKL+E+SF +
Sbjct: 448 RTFPLRSSFRPSYNMSINLV------------ERMGA-------ADSRKLLERSFAQFQA 488
Query: 665 SNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
++ + + ++ L ++ ++ Y E A+L+E L A +R
Sbjct: 489 DRSVVGLVRGIERNEEALKGLQEKLGG-----------ADGEYFEYASLRERLSARER 535
>gi|383823432|ref|ZP_09978626.1| ATP-dependent DNA helicase HelY [Mycobacterium xenopi RIVM700367]
gi|383339007|gb|EID17360.1| ATP-dependent DNA helicase HelY [Mycobacterium xenopi RIVM700367]
Length = 920
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 217/624 (34%), Positives = 308/624 (49%), Gaps = 76/624 (12%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
N +D + F +D FQ+ + A RG V+V APT +GKT++ E A +A
Sbjct: 2 NAPTQLDRFVAELPFALDDFQQRACVALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGG 61
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ FYTTPLKALSNQK + +G + +GLLTGD ++N A +++MTTE+LRNMLY
Sbjct: 62 KCFYTTPLKALSNQKHTDLTARYGRDRIGLLTGDLSVNANAPVVVMTTEVLRNMLYADSP 121
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
++ S +V+DEVH+L+D RG VWEE+I+ P EV+++ LSATV+NA+E GW
Sbjct: 122 VLQGLSH------VVMDEVHFLADRMRGPVWEEVILNLPDEVRLVSLSATVSNAEEFGGW 175
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 383
I + G T ++ RPVPL + L L D L++S S V+
Sbjct: 176 IQTVRGDTTVVVDEHRPVPLWQHMLVGKRLFDLFDYDA-------DAGQLRVSPSLVRHI 228
Query: 384 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 443
+ RR + + AD + R P+V+ L +LP
Sbjct: 229 ----AHRREATRLADWRPRRPAGRG-GPGRAGGRPGFYRPPSRPEVVAIL---DREGLLP 280
Query: 444 AIWFIFNRRGCDAAV-QYLEDCNLL----DECEMSEV------ELALKRFRILYPDAVRE 492
AI F+F+R GCDAAV Q L L D ++EV +LA + +L RE
Sbjct: 281 AITFVFSRAGCDAAVAQCLRSPLRLTTEEDRARIAEVIDHRCGDLADEDLAVLGYYEWRE 340
Query: 493 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
GL++G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART VL L
Sbjct: 341 ----GLMRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLV 396
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE----- 607
K + LT E Q+ GRAGRRGID GH V++ P E E ++ AG+
Sbjct: 397 KFNGEQHLPLTPGEYTQLTGRAGRRGIDVEGHAVVIWDPQEETAEPAEV--AGLASTRTF 454
Query: 608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV 667
PL S F SY M +NL+ + M E+A +L+E SF Y
Sbjct: 455 PLRSSFAPSYNMTINLV------------NRMGP-------EQAHRLLEHSFAQYQADRS 495
Query: 668 MLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTEL 727
++ + + ++ D + +E+ +A + A L+E + +R +
Sbjct: 496 VVGLVRGIERGRRLLDEIAAELGG-----------HDAPILDYARLRERISQRERAQARA 544
Query: 728 RRRMELKRFSALKDILKDFENGHL 751
R +R A D L G +
Sbjct: 545 SR---AQRRQAANDALASLRRGDI 565
Score = 42.0 bits (97), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 15/200 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHE---TRALDINTQVIFPLGETAAA 1013
E+ R++ + L +++ S + F RI ++ E R L+ + QV G A
Sbjct: 697 ERYLRIERDNAALQQKVAAATNSLARTFDRIVGLLTERGFIRMLNGDPQVTED-GRLLAR 755
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
I E++L +A LR + L+PA+LAAV ++++ E R + T +
Sbjct: 756 IYSESDLLVAECLRTGVWTGLRPAELAAVLSAVLYES---RGSEGAGPPQRADTPTAPLR 812
Query: 1074 NVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWAS--GLTWREMMMD---CALD 1125
L R EL +++H + + D F + WAS LT + D +
Sbjct: 813 RALARTRQLSTELRADEQRHRISLSREPDEGFVPAIYRWASTGDLTAALLATDDSGTGIS 872
Query: 1126 DGDLARLLRRTIDLLAQIPK 1145
GD R R+ +DLL Q+ K
Sbjct: 873 AGDFVRWCRQVLDLLDQVRK 892
>gi|333919686|ref|YP_004493267.1| putative helicase [Amycolicicoccus subflavus DQS3-9A1]
gi|333481907|gb|AEF40467.1| Putative helicase [Amycolicicoccus subflavus DQS3-9A1]
Length = 911
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 202/581 (34%), Positives = 288/581 (49%), Gaps = 53/581 (9%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A++ F +D FQ + +A G V+V APT +GKT++ E A +++ R+ FYTTP+
Sbjct: 14 FAAMLPFPMDPFQVRACDALEGGHGVLVCAPTGAGKTVVGEFAVHLALSSGRKCFYTTPI 73
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + + + VGLLTGD +IN EA +++MTTE+LRNMLY + L
Sbjct: 74 KALSNQKYNDLVARYDRDTVGLLTGDQSINSEAPVVVMTTEVLRNMLY------AGSDTL 127
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ +V+DEVH+L+D RG VWEE+I++ +V ++ LSATV+NA+E W+ + G T
Sbjct: 128 RGLSHVVMDEVHFLADRFRGAVWEEVILHLADDVALVSLSATVSNAEEFGAWMETVRGDT 187
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR-- 389
+I RPVPL + LL L + + +LN L+ + G R
Sbjct: 188 TVIVDETRPVPLWQHMLVGPRLLDLFPSRSTGKGSR-ALNPDLLAHVRKRLAAAGAERGH 246
Query: 390 -RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
R+++R N R + P + + L +LPAI F+
Sbjct: 247 YRQSNRDRGRFRGGNGA-----------------RYRPPGRAEIIARLDGEGLLPAITFV 289
Query: 449 FNRRGCDAAVQYLEDCN--LLDECEMSEVE-LALKRFRILYPDAVREPAIKG----LLKG 501
F+R GCDAAV L E E E+ + K L P ++ G L +G
Sbjct: 290 FSRAGCDAAVGQCVRAGLALTTEAEAKEIRAIITKHTGELPPADLQVLGFSGWCTALERG 349
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL SL K
Sbjct: 350 IAAHHAGMLPAFRHTVEELFVKGLVRAVFATETLALGINMPARTVVLESLVKFNGDTHAD 409
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
LT E Q+ GRAGRRGID GH V++ P E L PL S F Y M +
Sbjct: 410 LTPGEYTQLTGRAGRRGIDIEGHAVVLWQPGVDPEMVAGLASTRTFPLRSSFAPGYNMAI 469
Query: 622 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKE 681
NLL R E+AR L+E+SF + ++ A + + ++E
Sbjct: 470 NLL-------------------RQRPAEDARALLERSFAQFQTDRSVVGAARTVERNERE 510
Query: 682 TDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
+ L + D L + +L+ AE+R
Sbjct: 511 LERLEGRVDCHLGDFAEYARLRRGISQREKDLERSATAERR 551
Score = 47.4 bits (111), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 10/215 (4%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHE----TRALDINTQVIFPLGETAA 1012
E+ RLKA + RL +++ S + F RI ++ E + A D + GE +
Sbjct: 693 ERYDRLKADTDRLRRQMNLASSSLARTFDRIVTLLTERGYVSEASDTADSTVTEEGEWLS 752
Query: 1013 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 1072
I E++L +A LR I L PA+LAA +++V E + + + ++ +
Sbjct: 753 RIYSESDLLVAEALRRGIWKGLGPAELAATVSAVVFETRREGVTAGHVPTAPLRRSLADT 812
Query: 1073 INVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-ALDDGDLAR 1131
+ + +E S L +H + D+ F WA+ E ++ + GD R
Sbjct: 813 MRIWEEIHSDEL----RHKLPTMREPDAGFVHAAYLWATEAPLVEALLAANEISAGDFVR 868
Query: 1132 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
R+ IDLL QI ++ D+ ++ A A + R
Sbjct: 869 WCRQLIDLLDQI-RIAAPDREVRSTAGKAIAAVRR 902
>gi|306818705|ref|ZP_07452427.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35239]
gi|304648391|gb|EFM45694.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35239]
Length = 810
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 192/523 (36%), Positives = 275/523 (52%), Gaps = 72/523 (13%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+DE +++DF D FQ + + G+ V+V+APTS+GKT++ + +R+FYT
Sbjct: 41 LDEFQAMFDFPFDDFQIAGCQVLDGGADVLVTAPTSAGKTIVGLYGIFLALRQGKRLFYT 100
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF E ++ FG +VGLLTGD+ +N EA I++MTTE+LRNM+Y ++
Sbjct: 101 TPIKALSNQKFLELQQIFGSGSVGLLTGDTVVNGEADIIVMTTEVLRNMIY-------AK 153
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ L + +V+DEVHYLSD RG VWEEIII+ V+++ LSATV+N+ + A W+ +
Sbjct: 154 ADLSALGFVVMDEVHYLSDQFRGPVWEEIIIHLDPAVRLVYLSATVSNSRQFADWLETLR 213
Query: 329 GKTELITSSRRPVPLTWYFSTKTA-LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G T+++++S RPVPL + A + PL + + N LN L+ + K
Sbjct: 214 GPTKVVSTSTRPVPLEHFMVNHDAEIFPLFENQKTRGN----LNRALLAEAAQLLMK--- 266
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+ N + RR L+ +LPAI F
Sbjct: 267 -----------------RRGRFPRRQRANRVEIARR------------LQREGLLPAIQF 297
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI----LYPDAVREPAI----KGLL 499
IF+R GCDAA ++ L E +E E+ +R P+ + I + L
Sbjct: 298 IFSRAGCDAAATEVQRSGLRLTSE-AEAEIIRRRVETTLAGFNPEDLSASNIYAWEENLA 356
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
G+A+HHAG LPI K +E LF GLV++VFATETLA GINMPART VL +L+K S R
Sbjct: 357 AGIASHHAGLLPIQKQLVENLFADGLVRLVFATETLALGINMPARTVVLETLNKFNGSER 416
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
LT+ E Q+ GRAGRRGID G+ + V + L PL S F +Y M
Sbjct: 417 ANLTAGEYTQLTGRAGRRGIDTFGYALTVLDARNPPQVLASLAAGQSFPLHSAFAPNYNM 476
Query: 620 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
+NLL S + A++ VE+SF +
Sbjct: 477 AVNLLVRT-------------------SFDGAQRTVEKSFAQF 500
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 1006 PLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSSI 1062
P G + E +L + ++ + DL ++LA A +SE G RL N+S+
Sbjct: 646 PKGVMLQGVYNERDLLVVECVQRGLFTDLTVSELAGALAVCISENRGGGPSRLIPANASL 705
Query: 1063 YEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-MD 1121
+ + + +LQE H +E LD+ + V AWA G T E + +
Sbjct: 706 -----RLATALEAMARLNFDLAQLQESHLLEPYQPLDTGEALGVVAWAQGKTLTECLELG 760
Query: 1122 CALDDGDLARLLRRTIDLLAQIPKL--PDVDQRLQK 1155
+ GD R++R+ IDL Q+ ++ P QR Q+
Sbjct: 761 GGVGAGDFVRMVRQVIDLSNQLRQVVEPGSSQRFQQ 796
>gi|113678409|ref|NP_001038366.1| helicase SKI2W [Danio rerio]
gi|94733402|emb|CAK04564.1| novel protein similar to vertebrate superkiller viralicidic
activity 2-like 2 (S. cerevisiae) (SKIV2L2) [Danio
rerio]
Length = 1230
Score = 310 bits (795), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 194/482 (40%), Positives = 260/482 (53%), Gaps = 59/482 (12%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
Y F +D FQ+ +I SV V+A TS+GKT++AE A + + R YT+P+KALS
Sbjct: 315 YPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMTRTIYTSPIKALS 374
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQKFR+F+ TFGD VGLLTGD +N E LIMTTEILR+MLY ++ D++
Sbjct: 375 NQKFRDFKNTFGD--VGLLTGDVQLNPEGSCLIMTTEILRSMLYNGSEVIR------DLE 426
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
++ DEVHY++D RG VWEE++I P+ V II LSATV NA E + WIG+I + +I
Sbjct: 427 WVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVEFSEWIGRIKKRHIYVI 486
Query: 335 TSSRRPVPLTWYF----STKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ +RPVPL Y STKT L LLD G + + Y +
Sbjct: 487 STIKRPVPLEHYLYTGNSTKTQKELFMLLDATGNFLTKGY--------------YAAVEA 532
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
++ + KHA SFG +S+++ A +R Q P + F
Sbjct: 533 KKERTSKHAQ--------SFGTKNVSQHNTTASQRQQTP----------------VVAFT 568
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KGLLK-GVA 503
F+R CD + L +L E SE+ L++ R+ P I + LLK G+
Sbjct: 569 FSRTRCDENARSLTSLDLTTSIEKSEIHSFLQKSLTRLRGGDRQLPQILLMRDLLKRGIG 628
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K IE LF RGLVKV+FATET A G+NMPART V S+ K +G L
Sbjct: 629 VHHSGILPILKEVIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLL 688
Query: 564 SNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
E QMAGRAGRRG+D G V +L + E ++ L SQF +Y M+LN
Sbjct: 689 PGEYIQMAGRAGRRGLDATGTVIILCKAGVHDMGELHSMMLGKPTVLHSQFRLTYTMILN 748
Query: 623 LL 624
LL
Sbjct: 749 LL 750
>gi|309813099|ref|ZP_07706823.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
gi|308432903|gb|EFP56811.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
Length = 929
Score = 310 bits (795), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 193/529 (36%), Positives = 278/529 (52%), Gaps = 47/529 (8%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
+ +D FQ + G SV+V+APT +GK+++ E A V R+ FYTTP+KALSNQ
Sbjct: 31 YPLDDFQSEAARTVQDGRSVLVAAPTGAGKSVVGEFACYLAVHTGRKAFYTTPIKALSNQ 90
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + E G NVGLLTGD++ N EA +++MTTE+LRNMLY + S L + +
Sbjct: 91 KYADLVEMLGTENVGLLTGDTSHNSEAPVVVMTTEVLRNMLY------AGSSTLGGLGFV 144
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVHYL+D RG VWEE++I+ P+ VQ+I LSATV+NA+E W+ Q+ G T+++ +
Sbjct: 145 VMDEVHYLADRFRGAVWEEVMIHLPESVQVIALSATVSNAEEFGDWMQQVRGDTDVVITE 204
Query: 338 RRPVPLTWYFSTKTALLPLL--DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 395
RPVPL + L LL DE+G +R ++ + L S P + GG R
Sbjct: 205 HRPVPLYQHMMVGARLYDLLGEDERG---DRVVNPDLLSRIASLTAPAR-GGHR------ 254
Query: 396 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCD 455
D+ + + G+ + + R P+ + + L +LPAI FIF+R GC+
Sbjct: 255 -FDVGAPSGRRGRGRRPVPRQPQGETFRP-APRA-EVIAALDRAGLLPAITFIFSRAGCE 311
Query: 456 AAVQYLEDCNLL----DECEMSEVELALKRFRILYPDAV---REPAIKGLLKGVAAHHAG 508
AV L + DE +A + I D ++GL +G AAHHAG
Sbjct: 312 GAVAQLLGYGMQLVTDDESATIRAYVAERVAHIPVEDLAVIGYHDFVEGLARGFAAHHAG 371
Query: 509 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 568
LP ++ +EELF G +K VFATETLA GINMPAR+ VL L K + +T E
Sbjct: 372 MLPTFREIVEELFVTGQIKAVFATETLALGINMPARSVVLERLVKYNGEAHVDVTPAEFT 431
Query: 569 QMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK 628
Q+ GRAGRRGID GH +++ E L PL S F ++ M +NL+
Sbjct: 432 QLTGRAGRRGIDVEGHAIVLYNRGVEPEAVAGLASRRTYPLRSSFRPTFNMAVNLVH--- 488
Query: 629 VMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCK 677
GR E AR+++E SF + ++ ++ K
Sbjct: 489 --------------TVGR--ERAREVLESSFAQFQADRSVVGLSRQIAK 521
>gi|226185770|dbj|BAH33874.1| putative helicase [Rhodococcus erythropolis PR4]
Length = 905
Score = 310 bits (794), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 202/598 (33%), Positives = 303/598 (50%), Gaps = 90/598 (15%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
++ AS F +D FQ + A G V+V APT +GKT++ E A +A R+ FY
Sbjct: 7 ELSTFASSLKFELDPFQVKACVALEAGHGVLVCAPTGAGKTVVGEFAVHLALAAGRKCFY 66
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK+ E E +G + VGLLTGDS+IN +A +++MTTE+LRNMLY ++
Sbjct: 67 TTPIKALSNQKYAELVERYGPSEVGLLTGDSSINSDAPVVVMTTEVLRNMLY------AN 120
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
L + +V+DEVHYL+D RG VWEE+I++ ++V+++ LSATV+NA+E W+ +
Sbjct: 121 SEALRGLSHVVMDEVHYLADRFRGAVWEEVILHLSEDVRLVSLSATVSNAEEFGSWMETV 180
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKG----------------KHMNRKLSLN 371
G T ++ RP+PL + + L D + +H+ ++ +L
Sbjct: 181 RGDTTVVVDETRPIPLWQHIMVGRRIFDLFDSRSHPAAGPKTVLVDQDLVRHVKQRQALE 240
Query: 372 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 431
V+ ++ G RR S + S N + R D
Sbjct: 241 -------RVESWQPRGRGRRGSYQ------------------SSNDFRPLPRP------D 269
Query: 432 TLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPDA 489
+ L +LPAI FIF+R GCDAA+ Q L +L ++ E++ +++ P+
Sbjct: 270 VIAQLDQSGLLPAITFIFSRAGCDAALAQCLRSRLDLTSPEQVREIDTIIEKHTGELPEE 329
Query: 490 VREPA-----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 544
E K L +G+A+HHAG LP ++ +EELF +GLV+ VFATETLA GINMPAR
Sbjct: 330 DLEVLGYRDWCKALRRGLASHHAGMLPAFRQTVEELFVKGLVRAVFATETLALGINMPAR 389
Query: 545 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 604
T VL L K +LT E Q+ GRAGRRGID GH V++ P + L
Sbjct: 390 TVVLERLVKYNGESHAELTPGEYTQLTGRAGRRGIDVEGHAVVLWQPGVEPTDVAGLAST 449
Query: 605 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 664
PL S F SY M +NL+ + M A ++RKL+E+SF +
Sbjct: 450 RTFPLRSSFRPSYNMSINLV------------ERMGA-------ADSRKLLERSFAQFQA 490
Query: 665 SNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
++ + + ++ L ++ ++ Y E A+L+E L A +R
Sbjct: 491 DRSVVGLVRGIERNEEALKGLQEKLGG-----------ADGEYFEYASLRERLSARER 537
>gi|23465319|ref|NP_695922.1| helicase [Bifidobacterium longum NCC2705]
gi|23325959|gb|AAN24558.1| probable helicase [Bifidobacterium longum NCC2705]
Length = 863
Score = 310 bits (794), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 200/534 (37%), Positives = 288/534 (53%), Gaps = 76/534 (14%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + +A GS+V+V+APT +GKT++A+ A + FYTTP+KALSNQ
Sbjct: 45 FELDDFQTEANDALEAGSNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKALSNQ 104
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + + +G + VGLLTGD++IN EA I++MTTE+LRNMLY+ +++ + +
Sbjct: 105 KYHDLVDVYGPDKVGLLTGDTSINSEADIVVMTTEVLRNMLYERSTTLNA------LRYV 158
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
+LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 159 ILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVISE 218
Query: 338 RRPVPLTWYF------STKTALLPLLDEKGK-HMNRKLSLNYL-QLSTSEVKPYKDGGSR 389
RPVPL + T+ +L L G KL+ + +L + K + G
Sbjct: 219 HRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQATKLNAELINRLDQLDRKAARRRGEE 278
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ--VPQ---VIDTLWHLRSRDMLPA 444
R + RK FG+ + K + +++ P+ V+D L L MLP
Sbjct: 279 RPDKRK-----------GFGRDRGGKGAKGHAPKAERHTPRRWAVVDELNFL---GMLPG 324
Query: 445 IWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVRE 492
I+FIF+R GCD AV+ + L DE EM E +L + + L R
Sbjct: 325 IYFIFSRNGCDQAVEQCINAGLELTTDEEVTKIRRIVDEMVEGQLTQEDLKALQFSKFR- 383
Query: 493 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L
Sbjct: 384 ---FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKLE 440
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEP 608
K +G + LT E Q+ GRAGRRGID GH ++V P A K ++ P
Sbjct: 441 KFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY----P 496
Query: 609 LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
L S F ++ M +NLL N SD E AR ++QSF +
Sbjct: 497 LHSSFRPTFNMAVNLL---------NSSD----------YETARVTLDQSFAQW 531
>gi|150866632|ref|XP_001386296.2| hypothetical protein PICST_85287 [Scheffersomyces stipitis CBS
6054]
gi|149387888|gb|ABN68267.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 1239
Score = 310 bits (794), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 194/531 (36%), Positives = 284/531 (53%), Gaps = 51/531 (9%)
Query: 124 REEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPT 183
R++ W V L + + F +E+I +A + F +D FQ+ ++ +G SV V+A T
Sbjct: 254 RKQKSWAHVVDLDHTIDNF-HELIP--NMARTWPFELDTFQKEAVYHLEKGDSVFVAAHT 310
Query: 184 SSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINRE 243
S+GKT++AE A N R YT+P+KALSNQKFR+F+ETF D +VGL+TGD IN
Sbjct: 311 SAGKTVVAEYAIAMASRNLTRTIYTSPIKALSNQKFRDFKETFKDTDVGLITGDVQINPG 370
Query: 244 AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK 303
A LIMTTE+LR+MLY+ ++ DV+ ++ DEVHY++DI RG VWEE+II P
Sbjct: 371 ANCLIMTTEVLRSMLYRGADIIR------DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPD 424
Query: 304 EVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGK 362
++ I LSATV N E A W+G+ K +I++ +RPVPL + S K + ++D
Sbjct: 425 HIKYILLSATVPNTFEFANWVGRTKEKDIYVISTPKRPVPLEIFISAKDNMFKVVDSHRV 484
Query: 363 HMNRKLSLNYLQLSTSEVKPYKDGGS-----------------RRRNSRKHADMNSNNIV 405
+ + L S+ KP S R + A+ N+V
Sbjct: 485 FSEDEFKKHKEHLENSKKKPGLPKASMGSGTRGGPGGSARGGNRGGRGGQSANRGRGNLV 544
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
T G +++ N ++ + +L+ ++LP + F+F+++ C+ L +
Sbjct: 545 TRAGGRFFAQDGPNK------GTWLNLVQYLKKSNLLPCVAFVFSKKKCEEYADSLTSVD 598
Query: 466 LLDECEMSEVELALKR--FRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIE 518
L E SE+ + + + FR+ D RE P I + L +G+A HH G LPI K IE
Sbjct: 599 LCTAREKSEIHMFIDKSLFRLKKED--RELPQILKIREMLSRGIAVHHGGLLPIVKECIE 656
Query: 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578
LF + LVKV+FATET A G+N+P RT V SSL K L E QM+GRAGRRG
Sbjct: 657 ILFAKTLVKVLFATETFAMGLNLPTRTVVFSSLRKNDGRSFRNLLPGEFTQMSGRAGRRG 716
Query: 579 IDNRGHVVLVQ-----TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
ID G V+++ +P + E + L SQF +Y M+LNLL
Sbjct: 717 IDATGTVIVMAYNDPLSPVDFKE----ITLGTPTKLQSQFRLTYNMILNLL 763
>gi|365824846|ref|ZP_09366806.1| hypothetical protein HMPREF0045_00442 [Actinomyces graevenitzii
C83]
gi|365259034|gb|EHM89029.1| hypothetical protein HMPREF0045_00442 [Actinomyces graevenitzii
C83]
Length = 916
Score = 310 bits (794), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 231/689 (33%), Positives = 337/689 (48%), Gaps = 104/689 (15%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
YDF +D FQ A G SV+V+APT +GKT++ E A + + R+ FYTTP+KALS
Sbjct: 30 YDFPLDDFQLEGCRALEEGKSVLVAAPTGAGKTVVGEFAVYLGLMSGRKTFYTTPIKALS 89
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+ + +G + VGLLTGD++IN A I++MTTE+LRNMLY + + L ++
Sbjct: 90 NQKYLDLVTRYGHDVVGLLTGDNSINPHAPIVVMTTEVLRNMLY------AGSADLENLA 143
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELIT 335
+V+DEVHYL+D RG VWEE II+ VQ++ LSATV+NA+E W+ ++ G ++I
Sbjct: 144 YVVMDEVHYLADRFRGPVWEESIIHLEASVQVVALSATVSNAEEFGQWLEEVRGHCQVIV 203
Query: 336 SSRRPVPLTWYFSTKTALLPLLD----EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR- 390
S RPVPL + L PL + G +NR L+ S GG +R
Sbjct: 204 SEHRPVPLKQFMMVGRKLFPLYSHEDTDSGAVINRDLT------SALHRARRAQGGYKRP 257
Query: 391 -RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R R A S+ RRS V + L MLPAI F+F
Sbjct: 258 PRPGRFPA-----------------PPSLTPPRRSVVIEA------LHKAHMLPAIVFVF 294
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----------IKGL 498
+R GC+ AV + + ++ E A + RI+ + + L
Sbjct: 295 SRNGCEEAVSQAMNAGI----NLTTAEEAQQIRRIIQANTAQLSGADLAAVGFYSWASAL 350
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
G+AAHHAG L +K +E+LF +GLVKVV+ATETLA G+NMPART VL SL K
Sbjct: 351 EHGIAAHHAGMLTAFKETVEQLFAQGLVKVVYATETLALGVNMPARTVVLESLRKWDGQA 410
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
QLT + Q+ GRAGRRGID+ G+ V++ A+ L PL S FT +Y
Sbjct: 411 HNQLTPGQYTQLTGRAGRRGIDSIGYAVVLGAGQVEAQTVASLASKRSYPLKSAFTPNYN 470
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKI 678
M +NLL+ + AR ++E SF + ++ K
Sbjct: 471 MAVNLLSRT-------------------NYNVARDILESSFAQFQADRAVVELAASARKA 511
Query: 679 QKETDVLTSEI---SDDAI------------DRKSRRLLSEAAYKEMANLQEELKAEKRF 723
+ + D L+S++ D I D++ ++L+S E L +++A KR
Sbjct: 512 RAKADNLSSQMRCSHGDYISYAQLLLDISSGDKELKQLISA---DETRYLTSQMRALKRG 568
Query: 724 RTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSE-----GVEHSVPAVYLGKFDS 778
L R R + + + +D LP L + + ++ +E PAV LGK
Sbjct: 569 DVILLRVGRRSRHAVVLERRQDAAG--LPLLSIVDETAKVQVLTPLELKGPAVVLGKMQL 626
Query: 779 LDSSKLKNMASINDSFALNRLAQ--SNGD 805
S +N +++ + A RL+Q + GD
Sbjct: 627 GHSVGARNHSALKKTAA--RLSQMVAGGD 653
>gi|227833093|ref|YP_002834800.1| helicase [Corynebacterium aurimucosum ATCC 700975]
gi|262182417|ref|ZP_06041838.1| putative helicase [Corynebacterium aurimucosum ATCC 700975]
gi|227454109|gb|ACP32862.1| putative helicase [Corynebacterium aurimucosum ATCC 700975]
Length = 937
Score = 310 bits (794), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 188/510 (36%), Positives = 265/510 (51%), Gaps = 59/510 (11%)
Query: 146 MIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205
+ +DE + +D FQ +A G V+V APT +GKT++ E A + R
Sbjct: 3 LTHLDEFTQALPYSLDDFQIQGCQAVEAGHGVLVCAPTGAGKTVVGEFAVSLALRQGTRC 62
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
FYTTP+KALSNQK+ + + G + VGLLTGD +IN A IL+MTTE+LRNM+Y G
Sbjct: 63 FYTTPIKALSNQKYHDLVDAHGADAVGLLTGDVSINSSADILVMTTEVLRNMIYAGSG-- 120
Query: 266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325
L + +V+DE+H+L+D SRG VWEE+I+ + V II LSATV+N++E W+
Sbjct: 121 ----ALDRLTHVVMDEIHFLADASRGAVWEEVILNLEEHVSIIGLSATVSNSEEFGRWLT 176
Query: 326 QIHGKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYK 384
+ G T++I + +RPVPL + + PL + G +N +L+ +L + +
Sbjct: 177 TVRGDTKVIVTDKRPVPLDQWMMVGRKIYPLFEPNSGGQVNTELARRIQRLEAGDTDSGR 236
Query: 385 -DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID---------TLW 434
D R + R A ++ ++ RRS P+ D L
Sbjct: 237 ADYAQNRASFRARARHKGGG-----------RSDRHSDRRSGAPRAQDRYRPLGRPEVLK 285
Query: 435 HLRSRDMLPAIWFIFNRRGCDAAV-QYLEDCNLL-DECEMSEVE---------------- 476
L++ +MLPAI FIF+R GCD A+ Q L +L + E +E++
Sbjct: 286 ELQAMEMLPAITFIFSRAGCDGALYQCLRSRMVLTSQEEATEIKAIVDTGVEGIPEEDLK 345
Query: 477 -LALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 535
L KR+R + L +G AAHHAG LP ++ +EELF +GLV+ VFATETL
Sbjct: 346 VLDFKRWR------------EALSRGFAAHHAGMLPAFRHIVEELFVKGLVRAVFATETL 393
Query: 536 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 595
A GINMPART VL L K + LT + Q+ GRAGRRGID G+ V+ P
Sbjct: 394 ALGINMPARTVVLEKLVKFNGEAHVDLTPGQYTQLTGRAGRRGIDTLGNAVVQWAPAMDP 453
Query: 596 EECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
L PL+S F Y M +NLL
Sbjct: 454 TAVAGLASTRTYPLISTFEPGYNMAINLLG 483
Score = 46.2 bits (108), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 97/224 (43%), Gaps = 22/224 (9%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINT------QVIFPLGET 1010
+K+ R + +L ++E+ + + F RI +++ E ++ VI GE
Sbjct: 715 QKLARRERELHKLEAKVERATDTLGRTFERIVDLLAEMDYVEFEGYGEDREPVITDEGER 774
Query: 1011 AAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVI 1070
A I E++L +A L+ I DL PA+LA V + V E K ++ EP
Sbjct: 775 LAKIHSESDLLVAQCLKRGIWNDLDPAELAGVASLCVFENRK-------TTRGEPGAASD 827
Query: 1071 NVINVLDEHRSSFLEL---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-----DC 1122
+ + +D + EL +++H + + F+ + W +G M
Sbjct: 828 AMADAMDATWRIYTELVADEKRHNLPQTREPEPAFALAIHQWTAGAPLAYCMAAANESGA 887
Query: 1123 ALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
L GD R R+ IDLL Q+ K D+ +++NA A + + R
Sbjct: 888 ELTPGDFVRWCRQVIDLLQQVAKTGYEDE-IRRNARRAIDAIQR 930
>gi|432335137|ref|ZP_19586752.1| ATP-dependent helicase [Rhodococcus wratislaviensis IFP 2016]
gi|430777935|gb|ELB93243.1| ATP-dependent helicase [Rhodococcus wratislaviensis IFP 2016]
Length = 911
Score = 310 bits (793), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 204/582 (35%), Positives = 300/582 (51%), Gaps = 59/582 (10%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
++D ++ F +D FQ ++ A G V+V APT +GKT++ E A +A+ R+ FY
Sbjct: 13 ELDVFSAQLGFVLDPFQINACRALEGGHGVLVCAPTGAGKTVVGEFAVHLALASGRKCFY 72
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK+ E +G + VGLLTGDS+IN +A +++MTTE+LRNMLY +
Sbjct: 73 TTPIKALSNQKYAELVRRYGKDTVGLLTGDSSINSDAPVVVMTTEVLRNMLY------AD 126
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
L + +V+DEVH+L+D RG VWEE+I++ ++V+++ LSATV+NA+E W+ +
Sbjct: 127 SPALRGLSHVVMDEVHFLADRFRGAVWEEVILHLSEDVRLVSLSATVSNAEEFGAWMETV 186
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G T ++ RP+PL + L L D + + + +L L + V+ K
Sbjct: 187 RGDTTVVVDENRPIPLWQHIMVGKRLFDLFDTRARSGD---ALKDLVVDQDLVRHVK--- 240
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+R + + AD + N S + R P+VI L +LPAI F
Sbjct: 241 --QRQALERAD-SWENRGRGRRGGGFSSD----FRPLPRPEVIS---RLDDEGLLPAITF 290
Query: 448 IFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLK 500
IF+R GCDAA+ Q L +L +++E+ + P A E K L +
Sbjct: 291 IFSRAGCDAALAQCLRSRLDLTTPEQVAEIRTIIDAHTAELPKADLEVLGYWEWRKALER 350
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 351 GLAAHHAGMLPAFRQTVEELFVKGLVRAVFATETLALGINMPARTVVLERLVKYNGEAHA 410
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
+LT E Q+ GRAGRRGID GH V++ P + L PL S F Y M
Sbjct: 411 ELTPGEYTQLTGRAGRRGIDIEGHAVVLWQPGVEPVDVAGLASTRTFPLRSSFRPGYNMT 470
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
+NL+ D M A E+R L+E+SF + ++ + + +
Sbjct: 471 INLV------------DRMGA-------AESRALLERSFAQFQADRSVVGLTRGIERNEA 511
Query: 681 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
L + + + Y E A L+EEL + +R
Sbjct: 512 ALTTLRERLGGE-----------DGEYFEYARLREELSSRER 542
>gi|312139730|ref|YP_004007066.1| dead/deah box helicase [Rhodococcus equi 103S]
gi|311889069|emb|CBH48382.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
Length = 898
Score = 310 bits (793), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 215/638 (33%), Positives = 308/638 (48%), Gaps = 117/638 (18%)
Query: 146 MIDVDELASI---YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ 202
M D LAS F +D FQ + A G V+V APT +GKT++ E A + +
Sbjct: 1 MTTNDRLASFTSQLSFPLDPFQLEACAALEAGHGVLVCAPTGAGKTVVGEFAVHLALESG 60
Query: 203 RRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSV 262
R+ FYTTP+KALSNQKF E +G + VGLLTGD++IN +A +++MTTE+LRNMLY
Sbjct: 61 RKCFYTTPIKALSNQKFNELSARYGSDAVGLLTGDTSINSDAPVVVMTTEVLRNMLY--- 117
Query: 263 GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAG 322
+ L + +V+DEVHYL+D RG VWEE+I++ P++V+++ LSATV+NA+E
Sbjct: 118 ---ADSPTLRGLSHVVMDEVHYLADRFRGAVWEEVILHLPEDVRLVSLSATVSNAEEFGA 174
Query: 323 WIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKG---------------KHMNRK 367
W+ + G T ++ RP+PL+ + L L D K +H+ ++
Sbjct: 175 WMETVRGDTTIVVDETRPIPLSQHILVGRRLFDLFDAKAAAGASHQVVVDPDLVRHVKQR 234
Query: 368 LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 427
L+L+ + + +P GG R N R P
Sbjct: 235 LALDRM----NSWEPRGRGGYRS----------------------------NDFRPLPRP 262
Query: 428 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK----RFR 483
+VI L +LPAI FIF+R GC+AA L +C S++ L R R
Sbjct: 263 EVIA---RLDEEGLLPAITFIFSRAGCEAA---------LAQCVRSKLRLTTPEQTARIR 310
Query: 484 ILYPDAVRE---PAI---------KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 531
+ + R P + + L +G AAHHAG LP +K +EELF GLV+ VFA
Sbjct: 311 EIIDEHTRHLPRPDLEVLGYWSWREALERGFAAHHAGMLPAFKETVEELFVNGLVRAVFA 370
Query: 532 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591
TETLA GINMPAR+ VL L K +LT E Q+ GRAGRRGID GH V++ P
Sbjct: 371 TETLALGINMPARSVVLERLVKYNGDTHAELTPGEYTQLTGRAGRRGIDVEGHAVVLWQP 430
Query: 592 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 651
+ L PL S F Y M +NL+ D M A+ E+
Sbjct: 431 GVEPTDVAGLASTRTFPLRSSFRPGYNMSINLV------------DRMGAV-------ES 471
Query: 652 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMA 711
R L+E+SF + ++ I++ LT D + + ++ Y E
Sbjct: 472 RALLERSFAQFQADRSVVGLTR---SIERNEAALT--------DLRDKLGCADGGYFEYF 520
Query: 712 NLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 749
++E+L++ +R L R+ R A L D G
Sbjct: 521 RIREQLRSRERM---LERQGRADRRGASVSSLVDLRRG 555
>gi|424853393|ref|ZP_18277770.1| ATP-dependent helicase [Rhodococcus opacus PD630]
gi|356665316|gb|EHI45398.1| ATP-dependent helicase [Rhodococcus opacus PD630]
Length = 911
Score = 310 bits (793), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 202/582 (34%), Positives = 299/582 (51%), Gaps = 57/582 (9%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
++D ++ F +D FQ ++ A G V+V APT +GKT++ E A + R+ FY
Sbjct: 11 ELDVFSAQLGFVLDPFQINACRALEGGHGVLVCAPTGAGKTVVGEFAVHLALGAGRKCFY 70
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK+ E +G + VGLLTGDS+IN +A +++MTTE+LRNMLY +
Sbjct: 71 TTPIKALSNQKYAELVRRYGKDTVGLLTGDSSINSDAPVVVMTTEVLRNMLY------AD 124
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
L + +V+DEVH+L+D RG VWEE+I++ ++V+++ LSATV+NA+E W+ +
Sbjct: 125 SPALRGLSHVVMDEVHFLADRFRGAVWEEVILHLSEDVRLVSLSATVSNAEEFGAWMETV 184
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G T ++ RP+PL + L L D + + + +L L + V+ K
Sbjct: 185 RGDTTVVVDENRPIPLWQHIMVGKRLFDLFDTRARSGD---ALKDLVVDQDLVRHVK--- 238
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+R + + AD + G + N + R P+VI L +LPAI F
Sbjct: 239 --QRQALERADSWESRGRGRRGGGRGFSNDFRPLPR---PEVIS---RLDDEGLLPAITF 290
Query: 448 IFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLK 500
IF+R GCDAA+ Q L +L +++E+ + P A E K L +
Sbjct: 291 IFSRAGCDAALAQCLRSRLDLTTPEQVAEIRTIIDAHTAELPKADLEVLGYWEWRKALER 350
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+AAHHAG LP ++ +EELF +GL++ VFATETLA GINMPART VL L K
Sbjct: 351 GLAAHHAGMLPAFRQTVEELFVKGLIRAVFATETLALGINMPARTVVLERLVKYNGEAHA 410
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
+LT E Q+ GRAGRRGID GH V++ P + L PL S F Y M
Sbjct: 411 ELTPGEYTQLTGRAGRRGIDIEGHAVVLWQPGVEPVDVAGLASTRTFPLRSSFRPGYNMT 470
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
+NL+ D M A E+R L+E+SF + ++ + + +
Sbjct: 471 INLV------------DRMGA-------AESRALLERSFAQFQADRSVVGLTRGIERNEA 511
Query: 681 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
L + + + Y E A L+EEL + +R
Sbjct: 512 ALTTLRERLGGE-----------DGEYFEYARLREELSSRER 542
>gi|225352111|ref|ZP_03743134.1| hypothetical protein BIFPSEUDO_03725 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225157358|gb|EEG70697.1| hypothetical protein BIFPSEUDO_03725 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 866
Score = 310 bits (793), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 225/630 (35%), Positives = 325/630 (51%), Gaps = 88/630 (13%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A F +D+FQ + +A G +V+V+APT +GKT+ A+ A + FYTTP
Sbjct: 44 EFARSMPFELDEFQMQANDALEAGDNVLVAAPTGAGKTVAADFAIYLAQTRNVKAFYTTP 103
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+ + + +G + VGLLTGD++IN EA I++MTTE+LRNMLY+ V+ E+
Sbjct: 104 IKALSNQKYHDLVDQYGTDKVGLLTGDTSINSEADIVVMTTEVLRNMLYEH--SVTLEA- 160
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+ ++LDEVHYL+D RG VWEE+II+ PK V II LSATV+N ++ + WI + GK
Sbjct: 161 ---LRYVILDEVHYLADRFRGPVWEEVIIHLPKNVNIIGLSATVSNVEDFSEWIESVRGK 217
Query: 331 TELITSSRRPVPLTWYF------STKTALLPLL--DEKGKHMNRKLSLNYLQLSTSEVKP 382
T L+ S +RPVPL + T+ L+ L D G+ + + +L + +
Sbjct: 218 TTLVMSEQRPVPLEQHVLVQADDHTEPELIDLYRRDANGEQTVKLNAQLINRLDQLDRQA 277
Query: 383 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSR 439
+ G RR + R+ + G+ + + + R P+ V+D L L
Sbjct: 278 ERRKGERRPDKRR-----------AKGKGGRWDDRPHKVER-HTPRRWAVVDELNFL--- 322
Query: 440 DMLPAIWFIFNRRGCDAAVQYLEDCNL----LDEC--------EMSEVELALKRFRILYP 487
DMLP I+FIF+R GCD AV + L DE EM E +L+ + + L+
Sbjct: 323 DMLPGIYFIFSRNGCDQAVDQCINAGLELTTSDEVQQIRRIVDEMVEGQLSQEDLKALHF 382
Query: 488 DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
R L +G A HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V
Sbjct: 383 SQFR----FALEEGFAPHHAGMVALFRQIVERLFEEGLVKMVFATETLALGINMPARCVV 438
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLF 603
+ L K +G + LT E Q+ GRAGRRGID GH V+V P A K ++
Sbjct: 439 VEKLEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAVVVDHHGFVPATAAALSSKRVY 498
Query: 604 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 663
PL S F ++ M +NLL N SD E AR ++ SF +
Sbjct: 499 ----PLHSSFRPTFNMAVNLL---------NSSD----------YETARVTLDHSFAQWE 535
Query: 664 GSNV---MLAAKDELCK-IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKA 719
+ + A + LCK ++ E D + R LS+ E L+ E+
Sbjct: 536 ANESAWQLEAQMETLCKALEGYEQAFQCEFGDFKKFMRLRMRLSDLEKNERRKLKHEV-- 593
Query: 720 EKRFRTELRRR---MEL-KRFSALKDILKD 745
FRT+ R M+L KR L++ +D
Sbjct: 594 ---FRTQKERSQAFMDLDKRIKKLREEDRD 620
>gi|359419360|ref|ZP_09211318.1| putative helicase [Gordonia araii NBRC 100433]
gi|358244767|dbj|GAB09387.1| putative helicase [Gordonia araii NBRC 100433]
Length = 942
Score = 309 bits (792), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 187/479 (39%), Positives = 265/479 (55%), Gaps = 31/479 (6%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
FR+D FQR + EA G V+V APT +GKT++ E A +A+ + FYTTP+KALSNQ
Sbjct: 20 FRLDDFQRRACEALAAGHGVLVCAPTGAGKTIVGEFAVHLALASGTKCFYTTPIKALSNQ 79
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
KF + E G NVGLLTGD+++N +A +++MTTE++RNM+Y + + L + +
Sbjct: 80 KFHDLVEIHGAANVGLLTGDNSVNPDAPVVVMTTEVVRNMIY------ADSAALDGLSFV 133
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVH+L+D RG VWEE+I++ V+++ LSATV+N++E WI + G T +I
Sbjct: 134 VMDEVHFLADRFRGAVWEEVILHLDPSVRVVSLSATVSNSEEFGAWIQTVRGDTTVIVDE 193
Query: 338 RRPVPLTWYFSTKTALLPLLDEKG-----KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
RPVPL + L L D + +N +L+ Y+ + ++ D G RR +
Sbjct: 194 IRPVPLWQHMLVGNRLFDLYDPRSLADGNPRVNPELT-RYI--AHRDLTAATDRGDRRED 250
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+ + R P+++ L +LPAI FIF+R
Sbjct: 251 RKGPRRGHRGRGRRP-------SGDRGGTRPVSRPEMV---VRLDREGLLPAIDFIFSRA 300
Query: 453 GCDAAVQYL--EDCNLLD-ECEMSEVELALKRFRILYP-DAVREPAIK---GLLKGVAAH 505
GC+ A+ NLLD E ++ +E+A + L P DA A + G+ +G AAH
Sbjct: 301 GCEGALAQCVRSGINLLDDEQRVAALEIADRYLAELSPVDADVLGADQWRLGISRGFAAH 360
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP ++ +EELF RGLV++VFATETLA GINMPAR+ VL L K + LT
Sbjct: 361 HAGLLPTFRHAVEELFVRGLVRMVFATETLALGINMPARSVVLERLVKYNGEAHVDLTPG 420
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E Q+ GRAGRRGID GH V+V +P E L A L S F Y M +NL+
Sbjct: 421 EFTQLTGRAGRRGIDTEGHAVVVWSPQMQVAEVAGLAGARTFALRSSFAPEYNMAVNLI 479
Score = 44.3 bits (103), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 9/137 (6%)
Query: 1013 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN- 1071
+I E++L ++ LR + L P +LAAV ASLV R + P + +
Sbjct: 778 SIYSESDLLVSECLREGAWIGLSPDELAAVVASLV---YTSRRESGGGTDRMPGSAALRA 834
Query: 1072 VINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDD 1126
++ +E + +HGV D+ FS WASG + E +M L
Sbjct: 835 ALSGTARIWRDVVEAELRHGVTPTREPDTGFSVAAAMWASGRSLAESLMAAGEAGQLLSP 894
Query: 1127 GDLARLLRRTIDLLAQI 1143
GD R R+ IDLL QI
Sbjct: 895 GDFVRWNRQVIDLLDQI 911
>gi|154487327|ref|ZP_02028734.1| hypothetical protein BIFADO_01176 [Bifidobacterium adolescentis
L2-32]
gi|154083845|gb|EDN82890.1| DEAD/DEAH box helicase [Bifidobacterium adolescentis L2-32]
Length = 849
Score = 309 bits (792), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 215/612 (35%), Positives = 315/612 (51%), Gaps = 67/612 (10%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + +A G +V+V+APT +GKT++A+ A + FYTTP+KALSNQ
Sbjct: 34 FELDDFQVKANDALEAGDNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKALSNQ 93
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + ET+G + VGLLTGD++IN EA I++MTTE+LRNMLY+ + + + +
Sbjct: 94 KYHDLVETYGPDRVGLLTGDTSINSEADIVVMTTEVLRNMLYEHSMTLDA------LRYV 147
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
+LDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G T L+ S
Sbjct: 148 ILDEVHYLADRFRGPVWEEVIIHLPQSVRIIGLSATVSNVEDFSKWIESVRGDTTLVVSE 207
Query: 338 RRPVPLTWYF------STKTALLPLL--DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
+RPVPL + T+ L+ L D+ G ++ + +L + K K G +
Sbjct: 208 KRPVPLEQHVLVQADDHTEPELIDLYRRDKDGNQTDKLNAQLVSRLDQLDRKAAKRRGEQ 267
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R + RK N H R + VID L L +LP I+FIF
Sbjct: 268 RPDRRKGGKGGKWN------DHSRRPERHTPRRWA----VIDELNFL---GILPGIYFIF 314
Query: 450 NRRGCDAAVQYLEDCNLL----DEC--------EMSEVELALKRFRILYPDAVREPAIKG 497
+R GCD AV+ + L DE EM E +L+ + + L+ R
Sbjct: 315 SRNGCDQAVEQCINAGLELTTDDEVRRIRRIVDEMVEGQLSQEDLKALHFSQFR----FA 370
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
L +G A HHAG + +++ +E LF+ GLVKVVFATETLA GINMPAR V+ L K +
Sbjct: 371 LEEGFAPHHAGMVALFRQIVERLFEEGLVKVVFATETLALGINMPARCVVVEKLEKFDGT 430
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
G + LT E Q+ GRAGRRGID GH V+V L V PL S F ++
Sbjct: 431 GHVGLTPGEFTQLTGRAGRRGIDTIGHAVVVDHHGFIPATAAALSSKRVYPLHSSFKPTF 490
Query: 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCK 677
M +NLL N SD E AR ++ SF + + + ++
Sbjct: 491 NMAVNLL---------NSSD----------YETARITLDHSFAQWEANESAWQLEAQMDT 531
Query: 678 IQKETD----VLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMEL 733
++K D E D + R LS+ E L+ E+ ++ R+E + ++
Sbjct: 532 LRKALDGYERAFDCEFGDFKEFMRLRMRLSDLEKNERRKLKHEVFRTQKARSEAFKDLD- 590
Query: 734 KRFSALKDILKD 745
+R + L++ +D
Sbjct: 591 RRIAELREKDRD 602
Score = 43.1 bits (100), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 123/320 (38%), Gaps = 41/320 (12%)
Query: 856 ETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLN---VPVLSSLSESDEVLHMS 912
ET + LD WE + W +E ++T +L+ + E + +
Sbjct: 503 ETARITLDHSFAQWEANESA-----WQLEAQMDTLRKALDGYERAFDCEFGDFKEFMRLR 557
Query: 913 FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEK---------IKRLK 963
D +E + ++ K + + AR+E FK+ + + ++ + K LK
Sbjct: 558 MRLSD-LEKNERRKLKHEVFRTQKARSEAFKDLDRRIAELREKDRDHPCRKCPDIQKHLK 616
Query: 964 -----ARS----KRLTKRIEQIEPSGWKEFLRISNVIHETRALD-----INTQVIFPLGE 1009
AR +R+ R + S ++F RI NV++E LD + + L E
Sbjct: 617 WGHRWAREMRELERVQHRYDSRTGSVARQFDRICNVLNELGYLDRLDEGAKEHIDYRLTE 676
Query: 1010 TAAAIR---GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPS 1066
+R E +L LA + + L +LA+ SL+ E R + P
Sbjct: 677 RGQLLRHLYSELDLVLAQAIDDGAFDGLDATELASAVMSLIYE---PRRGSGGEPRHYPG 733
Query: 1067 TTVINVINV---LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA 1123
NV L +S L E + ++ P LD + +V WA G + ++
Sbjct: 734 GMQGNVAVCAAQLKGVHASIAMLCEDYALDEPRQLDFGITDVVYEWAQGESLSRVLYGTD 793
Query: 1124 LDDGDLARLLRRTIDLLAQI 1143
L GD R +R D+L QI
Sbjct: 794 LTGGDFVRGCKRLADVLQQI 813
>gi|444433419|ref|ZP_21228560.1| putative helicase [Gordonia soli NBRC 108243]
gi|443885804|dbj|GAC70281.1| putative helicase [Gordonia soli NBRC 108243]
Length = 987
Score = 309 bits (792), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 203/563 (36%), Positives = 295/563 (52%), Gaps = 55/563 (9%)
Query: 146 MIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205
+ ++D ++ F++D FQR + A G V+V APT +GKT++ E A +A +
Sbjct: 25 LPELDRFSARLRFQLDDFQRRACVALEAGHGVLVCAPTGAGKTIVGEFAVHMALATGTKC 84
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
FYTTP+KALSNQK+ + G+ +VGLLTGD++IN A +++MTTE++RNM+Y
Sbjct: 85 FYTTPIKALSNQKYADLVAVHGEESVGLLTGDNSINAGAPVVVMTTEVVRNMIY------ 138
Query: 266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325
+ L + +V+DEVH+L+D RG VWEE+I++ V+++ LSATV+NA+E WI
Sbjct: 139 AGSPALRGLSYVVMDEVHFLADRFRGAVWEEVILHLAPSVRVVSLSATVSNAEEFGDWIQ 198
Query: 326 QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
+ G T +I RPVPL+ + L L + R +N E+K Y
Sbjct: 199 TVRGDTAVIVDEHRPVPLSQHMLVGNRLFDLFEPPTGGTGRP-GVN------PELKRYI- 250
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
R+ D S N + + + R ++ P D + L +LPAI
Sbjct: 251 -----RHRILTTDDGSGNDRGRGQRGRSGGPARRGGRGNRPPSRPDVVARLDRDGLLPAI 305
Query: 446 WFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRF---------RILYPDAVREPA 494
FIF+R GCD A+ Q L +LL E + V++ + R IL DA R
Sbjct: 306 AFIFSRAGCDGALTQCLRSGLSLLTPEESAAVDVVVDRHLADLSPADEDILGVDAWR--- 362
Query: 495 IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554
GL +G+AAHHAG LP ++ +EELF GLVKVVFATETLA GINMPAR+ VL L K
Sbjct: 363 -AGLRRGLAAHHAGLLPTFRHAVEELFVNGLVKVVFATETLALGINMPARSVVLERLVKF 421
Query: 555 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 614
+ LT E Q+ GRAGRRGID GH V+V TP ++ L A PL S F
Sbjct: 422 NGEAHVDLTPGEFTQLTGRAGRRGIDVEGHAVVVWTPELVPDQVAGLAGARTFPLRSSFA 481
Query: 615 ASYGMVLNLLAGAKVMHLSNESDDMKALQAGR-SLEEARKLVEQSFGNYVGSNVMLAAKD 673
Y M +NL+ GR L +R+L+++SF + ++
Sbjct: 482 PEYNMAVNLI--------------------GRVGLAGSRELLDRSFAQFQADRSVVGQAR 521
Query: 674 ELCKIQKETDVLTSEISDDAIDR 696
++ + ++ L E+++ AI R
Sbjct: 522 KVDEARRALRKLDVELANAAIRR 544
>gi|323507909|emb|CBQ67780.1| probable SKI2-antiviral protein and putative helicase [Sporisorium
reilianum SRZ2]
Length = 1288
Score = 309 bits (792), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 183/517 (35%), Positives = 276/517 (53%), Gaps = 60/517 (11%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V ++A + F +D FQ+ ++ +G SV V+A TS+GKT++AE A + R YT
Sbjct: 315 VPQMAHSFPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRCIYT 374
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQK+R+F++TFG NVG+LTGD IN EA LIMTTEILR+MLY+ ++
Sbjct: 375 SPIKALSNQKYRDFKQTFGAANVGILTGDVQINPEAPCLIMTTEILRSMLYRGSDLIR-- 432
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D RG VWEE+II CP+ + +I LSATV N E A W+G+
Sbjct: 433 ----DVEFVIFDEVHYVNDQERGVVWEEVIILCPQHINLILLSATVPNTKEFADWVGRTK 488
Query: 329 GK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
K +I++ +RPVPL + + ++D + + + + +K +
Sbjct: 489 KKDIYVISTPKRPVPLEHFLYAGKEMFKIVDARAQFLG------------TGIKAAGEAL 536
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP-------------------- 427
R++ + A+ + G+ + S + R P
Sbjct: 537 KRKQEKEREANAAAGGGAARGGRGGGAAGSNSRGRGGMTPARGAAPRGRGGAVGGRGGGY 596
Query: 428 --------QVIDTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE 474
+ LW +LR ++LP + F+F+++ C+ + + +L + SE
Sbjct: 597 TGTTTVRTGLDKNLWIHLVGNLRKNNLLPCVVFVFSKKRCEEYATSMPNTDLNTAKDKSE 656
Query: 475 VELALKRFRILYPDAVRE-PAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVV 529
V + +++ + +E P IK L +G+ HH G LPI K +E LFQRGLVKV+
Sbjct: 657 VHILIEKSLTRLKGSDKELPQIKRMRDLLGRGIGVHHGGLLPIVKEIVELLFQRGLVKVL 716
Query: 530 FATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ 589
FATET A G+NMPAR+ V SS+ K G +L E QM+GRAGRRG+D G VV++
Sbjct: 717 FATETFAMGVNMPARSVVFSSIRKHDGHGFRELLPGEYTQMSGRAGRRGLDATG-VVIIN 775
Query: 590 TPYEGAEECC--KLLFAGVEPLVSQFTASYGMVLNLL 624
+ E K+L L SQF +Y M+LNLL
Sbjct: 776 AADQLPETAVLHKMLLGQPTKLQSQFRLTYNMILNLL 812
>gi|119025836|ref|YP_909681.1| helicase [Bifidobacterium adolescentis ATCC 15703]
gi|118765420|dbj|BAF39599.1| probable helicase [Bifidobacterium adolescentis ATCC 15703]
Length = 882
Score = 309 bits (792), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 219/632 (34%), Positives = 313/632 (49%), Gaps = 85/632 (13%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + +A G +V+V+APT +GKT++A+ A + FYTTP+KALSNQ
Sbjct: 67 FELDDFQVKANDALEAGDNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKALSNQ 126
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + ET+G + VGLLTGD++IN EA I++MTTE+LRNMLY+ + + + +
Sbjct: 127 KYHDLVETYGPDRVGLLTGDTSINSEADIVVMTTEVLRNMLYEHSMTLDA------LRYV 180
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
+LDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N ++ + WI + G T L+ S
Sbjct: 181 ILDEVHYLADRFRGPVWEEVIIHLPQSVRIIGLSATVSNVEDFSKWIESVRGDTTLVVSE 240
Query: 338 RRPVPLTWYF------STKTALLPLL--DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
+RPVPL + T+ L+ L D+ G ++ + +L + K K G +
Sbjct: 241 KRPVPLEQHVLVQADDHTEPELIDLYRRDKDGNQTDKLNAQLVSRLDQLDRKAAKRRGEQ 300
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R + RK N H R + VID L L +LP I+FIF
Sbjct: 301 RPDRRKGGKGGKWN------DHSRRPERHTPRRWA----VIDELNFL---GILPGIYFIF 347
Query: 450 NRRGCDAAVQYLEDCNLL----DEC--------EMSEVELALKRFRILYPDAVREPAIKG 497
+R GCD AV+ + L DE EM E +L+ + + L+ R
Sbjct: 348 SRNGCDQAVEQCINAGLELTTDDEVRRIRRIVDEMVEGQLSQEDLKALHFSQFR----FA 403
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
L +G A HHAG + +++ +E LF+ GLVKVVFATETLA GINMPAR V+ L K +
Sbjct: 404 LEEGFAPHHAGMVALFRQIVERLFEEGLVKVVFATETLALGINMPARCVVVEKLEKFDGT 463
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEPLVSQF 613
G + LT E Q+ GRAGRRGID GH V+V P A K ++ PL S F
Sbjct: 464 GHVGLTPGEFTQLTGRAGRRGIDTIGHAVVVDHHGFIPATAAALSSKRVY----PLHSSF 519
Query: 614 TASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKD 673
++ M +NLL N SD E AR ++ SF + + +
Sbjct: 520 KPTFNMAVNLL---------NSSD----------YETARITLDHSFAQWEANESAWQLEA 560
Query: 674 ELCKIQKETD----VLTSEISD-----------DAIDRKSRRLLSEAAYKEMANLQEELK 718
++ ++K D E D +++ RR L ++ E K
Sbjct: 561 QMDTLRKALDGYERAFDCEFGDFKEFMRLRMRLSDLEKNERRKLKHEVFRTQKARSEAFK 620
Query: 719 AEKRFRTELRRRMELKRFSALKDILKDFENGH 750
R ELR + DI K + GH
Sbjct: 621 DLDRSIAELREKDRDHPCRKCPDIQKHLKWGH 652
Score = 43.1 bits (100), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 123/320 (38%), Gaps = 41/320 (12%)
Query: 856 ETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLN---VPVLSSLSESDEVLHMS 912
ET + LD WE + W +E ++T +L+ + E + +
Sbjct: 536 ETARITLDHSFAQWEANESA-----WQLEAQMDTLRKALDGYERAFDCEFGDFKEFMRLR 590
Query: 913 FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKI---------KRLK 963
D +E + ++ K + + AR+E FK+ + + ++ + K LK
Sbjct: 591 MRLSD-LEKNERRKLKHEVFRTQKARSEAFKDLDRSIAELREKDRDHPCRKCPDIQKHLK 649
Query: 964 -----ARS----KRLTKRIEQIEPSGWKEFLRISNVIHETRALD-----INTQVIFPLGE 1009
AR +R+ R + S ++F RI NV++E LD + + L E
Sbjct: 650 WGHRWAREMRELERVQHRYDSRTGSVARQFDRICNVLNELGYLDRLDEGAKEHIDYRLTE 709
Query: 1010 TAAAIR---GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPS 1066
+R E +L LA + + L +LA+ SL+ E R + P
Sbjct: 710 RGQLLRHLYSELDLVLAQAIDDGAFDGLDATELASAVMSLIYE---PRRGSGGEPRHYPG 766
Query: 1067 TTVINVINV---LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA 1123
NV L +S L E + ++ P LD + +V WA G + ++
Sbjct: 767 GMQGNVAVCAAQLKGVHASIAMLCEDYALDEPRQLDFGITDVVYEWAQGESLSRVLYGTD 826
Query: 1124 LDDGDLARLLRRTIDLLAQI 1143
L GD R +R D+L QI
Sbjct: 827 LTGGDFVRGCKRLADVLQQI 846
>gi|334337044|ref|YP_004542196.1| DEAD/DEAH box helicase [Isoptericola variabilis 225]
gi|334107412|gb|AEG44302.1| DEAD/DEAH box helicase domain protein [Isoptericola variabilis 225]
Length = 960
Score = 309 bits (792), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 201/559 (35%), Positives = 281/559 (50%), Gaps = 76/559 (13%)
Query: 136 CNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAA 195
+ ++ + + ++ + F +D FQ + A G V+V+APT +GKT++ E A
Sbjct: 17 ARQARDRADAVGELGRFRQVLGFELDPFQVDACVALEEGRGVLVAAPTGAGKTVVGEFAV 76
Query: 196 VATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILR 255
+A + FYTTP+KALSNQK+ + G NVGLLTGD+ IN EA +++MTTE+LR
Sbjct: 77 HLALARGGKAFYTTPIKALSNQKYGDLVRRHGAENVGLLTGDTTINSEAPVVVMTTEVLR 136
Query: 256 NMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVA 315
NMLY + S L + +V+DEVHYL+D RG VWEE+II+ P VQ++ LSATV+
Sbjct: 137 NMLY------AGSSTLDGLAYVVMDEVHYLADRFRGPVWEEVIIHLPDHVQLVSLSATVS 190
Query: 316 NADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQL 375
NA+E W+ + G T ++ S RRPVPL W ++ P + L
Sbjct: 191 NAEEFGDWLEMVRGDTAVVVSERRPVPL-WQHVIVSSAEP-----------RGVPRLFDL 238
Query: 376 STSEVKPYKDGGSRRRNSRKHADMNSN-------------NIVTSFGQHQLSKNSINAIR 422
V P G + N HA ++ + ++ A
Sbjct: 239 YAGHVDPTDPGTNPPINPDLHAVFRTHGRSDGGARGGRGGHRGKGDRGYRGRGPGRAAGG 298
Query: 423 RSQVPQ--------VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE 474
S VPQ V+D L +LPAI+FIF+R GC+ AV E C L ++
Sbjct: 299 ASLVPQRRTPPRFAVVDA---LDGEGLLPAIYFIFSRAGCEGAV---EQC-LHSGLRLTN 351
Query: 475 VELALKRFRILYPDAVREPA-----------IKGLLKGVAAHHAGCLPIWKSFIEELFQR 523
E + R++ PA + L +G+AAHHAG LP++K +EELF R
Sbjct: 352 AEEEAEIRRVVEQRTATIPAEDLEVLGYWTWQQSLARGIAAHHAGLLPVFKETVEELFAR 411
Query: 524 GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 583
GL+KVVFATETLA GINMPAR+ VL L K + +T E Q+ GRAGRRGID G
Sbjct: 412 GLLKVVFATETLALGINMPARSVVLEKLVKWDGTAHQPVTPGEYTQLTGRAGRRGIDVEG 471
Query: 584 HVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQ 643
H V+V P L + PL S F +Y M +NL+A Q
Sbjct: 472 HAVVVDHPGLDPVALAGLASKRLYPLRSSFRPTYNMAVNLVA-----------------Q 514
Query: 644 AGRSLEEARKLVEQSFGNY 662
GR + AR+++E SF +
Sbjct: 515 VGR--DRAREVLETSFAQF 531
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 10/193 (5%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIR- 1015
E+ +RLK L +R+E S + F R V+ L+ + + + +R
Sbjct: 742 ERWERLKREHDTLVRRVEGRTGSIARTFDRTCEVLVTLGYLEPAERAGLRVTDDGRWLRR 801
Query: 1016 --GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
EN+L LA LR L PA LAA +++V G + + Y P +
Sbjct: 802 LYAENDLLLAECLRRGTWDGLGPADLAAAVSTVVYSGRR----EEPVEPYVPGGPAGRLA 857
Query: 1074 NVLDEHR---SSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLA 1130
+ LDE S +L+ +H +E+ LD V WASG ++ + GD
Sbjct: 858 HALDETVRVWSQVTDLESEHRLEVTGPLDLGLVAPVHRWASGKGLDAVLRGTDVAAGDFV 917
Query: 1131 RLLRRTIDLLAQI 1143
R ++ +D+L Q+
Sbjct: 918 RWCKQVVDVLDQL 930
>gi|419963084|ref|ZP_14479066.1| ATP-dependent helicase [Rhodococcus opacus M213]
gi|414571485|gb|EKT82196.1| ATP-dependent helicase [Rhodococcus opacus M213]
Length = 909
Score = 309 bits (792), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 204/582 (35%), Positives = 299/582 (51%), Gaps = 59/582 (10%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
++D ++ F +D FQ ++ A G V+V APT +GKT++ E A +A R+ FY
Sbjct: 11 ELDVFSAQLGFVLDPFQINACRALEGGHGVLVCAPTGAGKTVVGEFAVHLALAAGRKCFY 70
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK+ E +G + VGLLTGDS+IN +A +++MTTE+LRNMLY +
Sbjct: 71 TTPIKALSNQKYAELVRRYGKDTVGLLTGDSSINSDAPVVVMTTEVLRNMLY------AD 124
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
L + +V+DEVH+L+D RG VWEE+I++ ++V+++ LSATV+NA+E W+ +
Sbjct: 125 SPALRGLSHVVMDEVHFLADRFRGAVWEEVILHLSEDVRLVSLSATVSNAEEFGAWMETV 184
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G T ++ RP+PL + L L D + + + +L L + V+ K
Sbjct: 185 RGDTTVVVDENRPIPLWQHIMVGKRLFDLFDTRARSGD---ALKDLVVDQDLVRHVK--- 238
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+R + + AD + N S + R P+VI L +LPAI F
Sbjct: 239 --QRQALERAD-SWENRGRGRRGGGFSSD----FRPLPRPEVIS---RLDDEGLLPAITF 288
Query: 448 IFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLK 500
IF+R GCDAA+ Q L +L +++E+ + P A E K L +
Sbjct: 289 IFSRAGCDAALAQCLRSRLDLTTPEQVAEIRTIIDAHTAELPKADLEVLGYWEWRKALER 348
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 349 GLAAHHAGMLPAFRQTVEELFVKGLVRAVFATETLALGINMPARTVVLERLVKYNGEAHA 408
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
+LT E Q+ GRAGRRGID GH V++ P + L PL S F Y M
Sbjct: 409 ELTPGEYTQLTGRAGRRGIDIEGHAVVLWQPGVEPVDVAGLASTRTFPLRSSFRPGYNMT 468
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
+NL+ D M A E+R L+E+SF + ++ + + +
Sbjct: 469 INLV------------DRMGA-------AESRALLERSFAQFQADRSVVGLTRGIERNEA 509
Query: 681 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
L + + + Y E A L+EEL + +R
Sbjct: 510 ALTTLRERLGGE-----------DGEYFEYARLREELSSRER 540
>gi|256376380|ref|YP_003100040.1| DEAD/DEAH box helicase domain-containing protein [Actinosynnema
mirum DSM 43827]
gi|255920683|gb|ACU36194.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
43827]
Length = 996
Score = 309 bits (791), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 202/563 (35%), Positives = 289/563 (51%), Gaps = 59/563 (10%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
S+ F +D FQ + E G V+V APT +GKT++ E A +A R+ FYTTP+KA
Sbjct: 29 SVVSFELDPFQLRACEFLEDGHGVLVCAPTGAGKTVVGEFAVHLALAEGRKCFYTTPIKA 88
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD 273
LSNQK+ + +G + VGLLTGD+++N +A +++MTTE+LRNMLY + S L
Sbjct: 89 LSNQKYADLCARYGQDKVGLLTGDTSVNGDAPVVVMTTEVLRNMLY------AGSSTLNS 142
Query: 274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 333
+ +V+DEVHYL+D RG VWEE+I++ P+ V+++ LSATV+NA+E W+ + G T +
Sbjct: 143 LGYVVMDEVHYLADRFRGPVWEEVILHLPESVRLVGLSATVSNAEEFGEWLVTVRGDTAV 202
Query: 334 ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 393
+ RPVPL + + L + + K++ L+ ++ + +R R +
Sbjct: 203 VVDEHRPVPLWQHMLAGPRMFDLFADDVADTHVKINPQLLR-QVEDLARFHVPWTRGRGN 261
Query: 394 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453
+ S + P +D + L + +LPAI F+F+R G
Sbjct: 262 KGGRPPRSTGF--------------------KPPSRVDVVQRLDAAGLLPAIVFVFSRAG 301
Query: 454 CDAA----VQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAI----KGLLKGVAAH 505
CDAA V+Y DE E+ + ++ R L D + + L +G+A+H
Sbjct: 302 CDAAVNQCVRYGLRLTTPDEVEVIR-RIVDEKTRDLPQDDLTVLGYWEWREALERGIASH 360
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP +K +EELF RGLVK VFATETLA GINMPART VL L K + LT
Sbjct: 361 HAGLLPAFKETVEELFVRGLVKAVFATETLALGINMPARTVVLEKLVKYNGEAHVDLTPG 420
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E Q+ GRAGRRGID GH V+V P + L PL S F Y M +NL
Sbjct: 421 EYTQLTGRAGRRGIDVEGHAVVVWQPGVDPKAVGGLASTRTYPLRSSFRPGYNMAVNL-- 478
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG--SNVMLAAKDELCK--IQKE 681
V L + AR L+EQSF + S V LA + E + +
Sbjct: 479 ---VHRLGAPA--------------ARDLLEQSFAQFQADRSVVGLARRIERNREALAGY 521
Query: 682 TDVLTSEISDDAIDRKSRRLLSE 704
+ +T + D A RR +SE
Sbjct: 522 AESMTCHLGDFAEYASLRRRVSE 544
>gi|226359987|ref|YP_002777765.1| helicase [Rhodococcus opacus B4]
gi|226238472|dbj|BAH48820.1| putative helicase [Rhodococcus opacus B4]
Length = 911
Score = 309 bits (791), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 203/582 (34%), Positives = 298/582 (51%), Gaps = 57/582 (9%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
++D ++ F +D FQ ++ A G V+V APT +GKT++ E A +A R+ FY
Sbjct: 11 ELDVFSAQLGFVLDPFQINACRALEGGHGVLVCAPTGAGKTVVGEFAVHLALAAGRKCFY 70
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK+ E +G + VGLLTGDS+IN +A +++MTTE+LRNMLY +
Sbjct: 71 TTPIKALSNQKYAELVRRYGKDTVGLLTGDSSINSDAPVVVMTTEVLRNMLY------AD 124
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
+ L + +V+DEVH+L+D RG VWEE+I++ ++V+++ LSATV+NA+E W+ +
Sbjct: 125 SAALRGLSHVVMDEVHFLADRFRGAVWEEVILHLSEDVRLVSLSATVSNAEEFGAWMETV 184
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G T ++ RP+PL + L L D + + + + L Q VK
Sbjct: 185 RGDTTVVVDENRPIPLWQHIMVGRRLFDLFDTRARSGDARNDLVVDQDLVRHVK------ 238
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+R + + AD G + + + R P+VI L +LPAI F
Sbjct: 239 --QRQALERADSWEPRGRGRRGGGRGYSSDFRPLPR---PEVIS---RLDDEGLLPAITF 290
Query: 448 IFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLK 500
IF+R GCDAA+ Q L +L +++E+ + P A E K L +
Sbjct: 291 IFSRAGCDAALAQCLRSRLDLTTPEQVAEIRTIVDAHTGELPKADLEVLGYWEWRKALER 350
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 351 GLAAHHAGMLPAFRQTVEELFVKGLVRAVFATETLALGINMPARTVVLERLVKYNGEAHA 410
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
+LT E Q+ GRAGRRGID GH V++ P + L PL S F Y M
Sbjct: 411 ELTPGEYTQLTGRAGRRGIDIEGHAVVLWQPGVEPVDVAGLASTRTFPLRSSFRPGYNMT 470
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
+NL+ D M A E+R L+E+SF + ++ + + +
Sbjct: 471 INLV------------DRMGA-------AESRALLERSFAQFQADRSVVGLTRGIERNEA 511
Query: 681 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
L + + + Y E A L+EEL + +R
Sbjct: 512 ALTTLRERLGGE-----------DGEYFEYARLREELSSRER 542
>gi|91086489|ref|XP_970674.1| PREDICTED: similar to antiviral helicase SKI2 [Tribolium castaneum]
Length = 1177
Score = 309 bits (791), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 218/656 (33%), Positives = 329/656 (50%), Gaps = 85/656 (12%)
Query: 52 ASYKSPKSFFPTEHKLTDA--DEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSDD 109
AS+ P S P + L + A + DDI + E E ++V +D
Sbjct: 141 ASFPDPVSQLPKQELLDTGTLENANIKKPDDISEHKQRETLPEEEEVL---------PND 191
Query: 110 EFEVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIE 169
+ + P P+ + +W + VK+F + E+A + F +D FQ+ +I
Sbjct: 192 PPILKISTVPPPTEFKSTEWAILLDTSKPVKDFKER---IPEMAYEFPFELDTFQKLAIL 248
Query: 170 AFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDN 229
+ + V V+A TS+GKT++AE A + + R YT+P+KALSNQK+R+F++ F D
Sbjct: 249 QLEQHNHVFVAAHTSAGKTVVAEYAIALSQKHMTRTIYTSPIKALSNQKYRDFKKEFKD- 307
Query: 230 NVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDIS 289
VGL+TGD IN+ A LIMTTEILR+MLY + D++ ++ DEVHY++D
Sbjct: 308 -VGLITGDFQINQTASCLIMTTEILRSMLYCGSDITR------DLEYVIFDEVHYINDRE 360
Query: 290 RGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KTELITSSRRPVPLTWYFS 348
RG VWE+++I P V ++ LSATV N E A W+G+ H K +IT+ +RPVPL +
Sbjct: 361 RGHVWEQVLILLPAHVCVVLLSATVPNTIEFADWLGRTHQRKVYVITTYKRPVPLLHFLY 420
Query: 349 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSF 408
T T NR L LN + +K GG + A + + +++
Sbjct: 421 TGTG-------GASRDNRYLVLNS--------EGWKMGGY----AAAVASLPKVDPKSAY 461
Query: 409 GQHQLSKNSINAIRRSQVPQVIDTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLED 463
Q + + P+ LW HL +++LP + F F+R CD + L
Sbjct: 462 PQAKSQYYNFT-------PKQEKVLWNGLVDHLNRKNLLPIVAFTFSRAKCDQNAENLMS 514
Query: 464 CNLLDECEMSEVEL-------ALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSF 516
+L + E +++ + +LK P +R I L KG+ HH+G LPI K
Sbjct: 515 LDLTTQKEKAQIHMFFEKCVRSLKEPDRNIPQILRMRNI--LHKGIGVHHSGVLPIIKEI 572
Query: 517 IEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGR 576
+E LFQ+GL+K++FATET A G+NMPART V S++K R L E QMAGRAGR
Sbjct: 573 VEMLFQKGLIKLLFATETFAMGVNMPARTVVFDSITKHDGQERRNLKPAEYIQMAGRAGR 632
Query: 577 RGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNE 635
RG+D+ G V +L + EE ++ L SQF +YGMVL+LL +V LS E
Sbjct: 633 RGLDSEGTVIILCKNKIPKVEELQAMMLGTPNVLQSQFRLTYGMVLSLL---RVESLSVE 689
Query: 636 SDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKET-DVLTSEIS 690
++ +SF M+ ++EL +++KE D+ T E+S
Sbjct: 690 G-----------------MMSRSFREADHQKKMVDKQNELLEVEKEIRDLCTQELS 728
>gi|456738501|gb|EMF63068.1| helicase [Propionibacterium acnes FZ1/2/0]
Length = 917
Score = 309 bits (791), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 191/524 (36%), Positives = 274/524 (52%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVARHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E GW+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGGWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPVPL + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAI 445
R R + + FG + R Q I + L ++LPAI
Sbjct: 235 RRPRGRSGKGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAI 294
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGL 498
F+F+R GCDAAV L + +L+ + +L A +R L + R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 47.8 bits (112), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|350569109|ref|ZP_08937506.1| superfamily II RNA helicase [Propionibacterium avidum ATCC 25577]
gi|348660687|gb|EGY77394.1| superfamily II RNA helicase [Propionibacterium avidum ATCC 25577]
Length = 919
Score = 309 bits (791), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 210/620 (33%), Positives = 309/620 (49%), Gaps = 69/620 (11%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q ++ + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVTACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVARHGEDQVGLLTGDVTINSEAPVVVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ +V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPQVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLL-DEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPVPLT + + L L D + +N +L + ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLTQHVAVGRRLHDLFGDRRLTDVNPEL----ISIAKEESRFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ-----------VPQVIDTLWHL 436
R R N SFG + S A RR + P I + L
Sbjct: 235 RRPRGRSGKGKRN-----VSFGSGRFGGAS--AQRRGRGGRDKPRGPRNQPSRIQVVRSL 287
Query: 437 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA 494
+ ++LPAI F+F+R GCDAAV L + +L+ + E ++ +R D R
Sbjct: 288 QRANLLPAIIFVFSRAGCDAAVSQLLNTDLVLTSQREARQLRRIAERHGEGLTDEERRAV 347
Query: 495 -----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
+ +G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL
Sbjct: 348 GWNHFVAAFERGIAAHHAGLLPVLKAIVEEGFVAGLLKVVIATETLALGINMPARTVVLE 407
Query: 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 609
L K +T E Q+ GRAGRRGID +GH V+ L PL
Sbjct: 408 KLVKYNGQTHADITPGEYTQLTGRAGRRGIDTQGHAVVCWQAGMDPRAVAGLASRRTYPL 467
Query: 610 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVML 669
S F +Y M +NL+ GR E+AR L+E SF + +
Sbjct: 468 NSAFVPTYNMAVNLVG-----------------SMGR--EKARDLLEHSFAQFQTDRRLG 508
Query: 670 AAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRR 729
+ K Q E D + D + E A ++EE+ + + LR+
Sbjct: 509 GSAVRSRKTQSEIDAYLKAAHCEHGD-----------FAEYARMREEIGELEHEQARLRK 557
Query: 730 RMELKRFSALKDILKDFENG 749
+R S + D L ++G
Sbjct: 558 G---ERPSQVADSLSRLDSG 574
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 11/190 (5%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL RS+R + S +F RI V+ L Q + G + I
Sbjct: 706 ERAMRLSRRSERELAKARAKATSIATQFERIVLVLEALGYLGEGGQDVTDAGRMLSGIYS 765
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSSIYEPSTTVINVI 1073
E +L A +R + L QLAAV +++V E G + L + E + + + +
Sbjct: 766 ELDLVTAEAIRRGVFDKLDYPQLAAVLSTIVHESRPGDRGHLHRMPDHGSESAESQLRAV 825
Query: 1074 NVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 1133
R+ L+ H +E P LD F+ M AWA+G ++ D + GD R +
Sbjct: 826 ------RAEIGLLERDHRIERPRDLDIGFAEMAYAWAAGAGLETVLDD--MSAGDFVRRV 877
Query: 1134 RRTIDLLAQI 1143
R+ DL QI
Sbjct: 878 RQVCDLAGQI 887
>gi|294654755|ref|XP_456821.2| DEHA2A11242p [Debaryomyces hansenii CBS767]
gi|199429124|emb|CAG84796.2| DEHA2A11242p [Debaryomyces hansenii CBS767]
Length = 1243
Score = 309 bits (791), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 212/617 (34%), Positives = 313/617 (50%), Gaps = 58/617 (9%)
Query: 35 GFCIPKPLLSSNSIQFQASYKSPKSFFPTEHKLTDADEAADEYDDDIDDDDDEEAADEYD 94
G I +S ++I K P+ P E L D + D D E +
Sbjct: 182 GLNISDSTVSDDNIVNLEQSKEPQDSQPEESTLEDKNFIESSNLSDQGSKSDNRLPFESE 241
Query: 95 DVSGEVSDE---IQQSDDEFEVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDE 151
D+ G + + ++QS DE AP ++ W V L ++++ F E+I
Sbjct: 242 DIDGIIPSDYASMKQSMDE---------APEHKK--SWAHVVDLDHKLENF-KEVIP--N 287
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
+A + F +D FQ+ ++ +G SV V+A TS+GKT++AE A N + YT+P+
Sbjct: 288 MAREWPFELDTFQQEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMATRNMTKAIYTSPI 347
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKFR+F+ETF D +VGL+TGD IN EA LIMTTEILR+MLY+ ++
Sbjct: 348 KALSNQKFRDFKETFKDIDVGLITGDVQINPEANCLIMTTEILRSMLYRGADLIR----- 402
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK- 330
DV+ ++ DEVHY++DI RG VWEE+II P V+ I LSATV N E A W+G+ K
Sbjct: 403 -DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPDHVKYILLSATVPNTYEFANWVGRTKQKD 461
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
+I++ +RPVPL + K L +D NRK S + + K + G+++
Sbjct: 462 IYVISTPKRPVPLEIFIWAKDHLFKAID-----ANRKFS----DIEFKKHKEILEKGNKK 512
Query: 391 RNSRKHADMNSNNI----------------VTSFGQHQLSKNSINAIRRSQVPQV-IDTL 433
H M + + V + G+ S R + +
Sbjct: 513 EPP--HVTMGAGSRGGRGGTARGGNRGGGQVANRGRGNFSGGRGGLTRDGPNKNTWVSLV 570
Query: 434 WHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE- 492
+++ ++LPA+ F+F+++ C+ L + + + E SEV + + R RE
Sbjct: 571 QYMKQHNLLPAVIFVFSKKKCEEFADTLSNVDFCNAREKSEVHMFIDRAVSRLKKEDREL 630
Query: 493 ---PAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
I+ LL +G+A HH G LPI K IE LF R LVKV+FATET A G+N+P RT V
Sbjct: 631 PQIIKIRDLLSRGIAVHHGGLLPIVKECIEILFARSLVKVLFATETFAMGLNLPTRTVVF 690
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV-E 607
++ K G L E QM+GRAGRRG+D+ G V+++ + K + G
Sbjct: 691 NTYRKHDGRGFRNLLPGEFTQMSGRAGRRGLDDTGTVIVMSFNEPLSPTDFKDVTLGTPT 750
Query: 608 PLVSQFTASYGMVLNLL 624
L SQF +Y M+LNLL
Sbjct: 751 KLSSQFRLTYNMILNLL 767
>gi|111017854|ref|YP_700826.1| ATP-dependent helicase [Rhodococcus jostii RHA1]
gi|110817384|gb|ABG92668.1| probable ATP-dependent helicase [Rhodococcus jostii RHA1]
Length = 911
Score = 308 bits (790), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 202/582 (34%), Positives = 300/582 (51%), Gaps = 57/582 (9%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
++D ++ F +D FQ ++ A G V+V APT +GKT++ E A + + R+ FY
Sbjct: 11 ELDVFSAQLGFVLDPFQINACRALEGGHGVLVCAPTGAGKTVVGEFAVHLALTSGRKCFY 70
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK+ E +G + VGLLTGDS+IN +A +++MTTE+LRNMLY +
Sbjct: 71 TTPIKALSNQKYAELVRRYGKDTVGLLTGDSSINSDAPVVVMTTEVLRNMLY------AD 124
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
L + +V+DEVH+L+D RG VWEE+I++ ++V+++ LSATV+NA+E W+ +
Sbjct: 125 SPALRGLSHVVMDEVHFLADRFRGAVWEEVILHLSEDVRLVSLSATVSNAEEFGAWMETV 184
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G T ++ RP+PL + L L D + + + +L L + V+ K
Sbjct: 185 RGDTTVVVDENRPIPLWQHIMVGKRLFDLFDTRARSGD---ALQDLVVDQDLVRHVK--- 238
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+R + + AD + G + + + R P+VI L +LPAI F
Sbjct: 239 --QRQALERADSWESRGRGRRGGGRGFSSDFRPLPR---PEVIS---RLDDEGLLPAITF 290
Query: 448 IFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLK 500
IF+R GCDAA+ Q L +L +++E+ + P A E K L +
Sbjct: 291 IFSRAGCDAALAQCLRSRLDLTTPEQVAEIRTIIDAHTAELPKADLEVLGYWEWRKALER 350
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 351 GLAAHHAGMLPAFRQTVEELFVKGLVRAVFATETLALGINMPARTVVLERLVKYNGEAHA 410
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
+LT E Q+ GRAGRRGID GH V++ P + L PL S F Y M
Sbjct: 411 ELTPGEYTQLTGRAGRRGIDIEGHAVVLWQPGVEPVDVAGLASTRTFPLRSSFRPGYNMT 470
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
+NL+ D M A E+R L+E+SF + ++ + + +
Sbjct: 471 INLV------------DRMGA-------AESRALLERSFAQFQADRSVVGLTRGIERNEA 511
Query: 681 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
L + + + Y E A L+EEL + +R
Sbjct: 512 ALTTLRERLGGE-----------DGEYFEYARLREELSSRER 542
>gi|393218249|gb|EJD03737.1| antiviral helicase [Fomitiporia mediterranea MF3/22]
Length = 1052
Score = 308 bits (790), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 213/594 (35%), Positives = 291/594 (48%), Gaps = 87/594 (14%)
Query: 86 DEEAADEYDDVSGEVSDEIQQSDDEFEVS-SDSSPAPSWREEFKWQRVEK-----LCNEV 139
DE A + +GEVS + + DD S S P + + V+K + +
Sbjct: 19 DESANTPQEGGNGEVSHDPSEIDDLLPTSRSQLRPVVPASKPLRRTAVQKREWAHVVDVR 78
Query: 140 KEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATV 199
K N V E+A Y F +D FQ+ ++ G SV V+A TS+GKT++AE A
Sbjct: 79 KPMTNFRELVPEMARKYPFELDTFQKEAVYHLEMGDSVFVAAHTSAGKTVVAEYAIALAA 138
Query: 200 ANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLY 259
+ R YT+P+KALSNQKFR+F++TF ++VG+LTGD IN EA LIMTTEILR+MLY
Sbjct: 139 KHMTRAIYTSPIKALSNQKFRDFKQTFSSSSVGILTGDVQINPEANCLIMTTEILRSMLY 198
Query: 260 QSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADE 319
+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V II LSATV N E
Sbjct: 199 KGADLIR------DVEFVIFDEVHYVNDAERGVVWEEVIIMLPEHVSIILLSATVPNTKE 252
Query: 320 LAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTS 378
A W+G+ K +I++ RPVPL Y + ++D KG+ LST
Sbjct: 253 FADWVGRTKKKDIYVISTPSRPVPLEHYLYAGRDIHKIVDSKGQF-----------LSTG 301
Query: 379 EVKPYKDGG-SRRRNSRKHADMNSNNIVTSFGQ--------------------------- 410
YKD G + RR K + V G
Sbjct: 302 ----YKDAGEALRRKQDKEREAAGLPPVQRLGARAAAPQRGQRGVTRGRGGGARGGGGAP 357
Query: 411 ------HQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC 464
HQ KN + + LR ++LP + F F++R C+ L +
Sbjct: 358 GGPRTFHQPDKN-----------LYVHLVGFLRKSNLLPVVVFTFSKRRCEENAATLTNV 406
Query: 465 NLLDECEMSEV----ELALKRFR-----ILYPDAVREPAI---KGLL-KGVAAHHAGCLP 511
+L E SEV E AL R + IL + P I + LL +G+ HH G LP
Sbjct: 407 DLSSASERSEVHVTIEKALARLKGRQTFILCCTDKKLPQIGRMRDLLSRGIGVHHGGLLP 466
Query: 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMA 571
I K +E LF RGLVKV+FATET A G+NMPA+ V S + K L + E QMA
Sbjct: 467 IVKEVVEILFARGLVKVLFATETFAMGVNMPAKCVVFSGIRKHDGKSFRTLEAGEYTQMA 526
Query: 572 GRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE-PLVSQFTASYGMVLNLL 624
GRAGRRG+D G V++ + + + G L SQF +Y M+LNLL
Sbjct: 527 GRAGRRGLDTTGTVIITASDEVPEITTLQTMMLGTPMRLQSQFRLTYNMILNLL 580
>gi|397730094|ref|ZP_10496856.1| DEAD/DEAH box helicase family protein [Rhodococcus sp. JVH1]
gi|396933988|gb|EJJ01136.1| DEAD/DEAH box helicase family protein [Rhodococcus sp. JVH1]
Length = 911
Score = 308 bits (790), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 202/582 (34%), Positives = 300/582 (51%), Gaps = 57/582 (9%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
++D ++ F +D FQ ++ A G V+V APT +GKT++ E A + + R+ FY
Sbjct: 11 ELDVFSAQLGFVLDPFQINACRALEGGHGVLVCAPTGAGKTVVGEFAVHLALTSGRKCFY 70
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK+ E +G + VGLLTGDS+IN +A +++MTTE+LRNMLY +
Sbjct: 71 TTPIKALSNQKYAELVRRYGKDTVGLLTGDSSINSDAPVVVMTTEVLRNMLY------AD 124
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
L + +V+DEVH+L+D RG VWEE+I++ ++V+++ LSATV+NA+E W+ +
Sbjct: 125 SPALRGLSHVVMDEVHFLADRFRGAVWEEVILHLSEDVRLVSLSATVSNAEEFGAWMETV 184
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G T ++ RP+PL + L L D + + + +L L + V+ K
Sbjct: 185 RGDTTVVVDENRPIPLWQHIMVGKRLFDLFDTRARSGD---ALQDLVVDQDLVRHVK--- 238
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+R + + AD + G + + + R P+VI L +LPAI F
Sbjct: 239 --QRQALERADSWESRGRGRRGGGRGFSSDFRPLPR---PEVIS---RLDDEGLLPAITF 290
Query: 448 IFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLK 500
IF+R GCDAA+ Q L +L +++E+ + P A E K L +
Sbjct: 291 IFSRAGCDAALAQCLRSRLDLTTPEQVAEIRTIIDAHTAELPKADLEVLGYWEWRKALER 350
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 351 GLAAHHAGMLPAFRQTVEELFVKGLVRAVFATETLALGINMPARTVVLERLVKYNGEAHA 410
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
+LT E Q+ GRAGRRGID GH V++ P + L PL S F Y M
Sbjct: 411 ELTPGEYTQLTGRAGRRGIDIEGHAVVLWQPGVEPVDVAGLASTRTFPLRSSFRPGYNMT 470
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
+NL+ D M A E+R L+E+SF + ++ + + +
Sbjct: 471 INLV------------DRMGA-------AESRALLERSFAQFQADRSVVGLTRGIERNEA 511
Query: 681 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
L + + + Y E A L+EEL + +R
Sbjct: 512 ALTTLRERLGGE-----------DGEYFEYARLREELSSRER 542
>gi|357588678|ref|ZP_09127344.1| ATP-dependent DNA helicase [Corynebacterium nuruki S6-4]
Length = 896
Score = 308 bits (788), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 204/610 (33%), Positives = 302/610 (49%), Gaps = 113/610 (18%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V A+ Y F +D FQ + A G V+V APT +GKT++ E A + + FYT
Sbjct: 7 VAAFAADYPFPLDDFQLEAARAIAAGRGVLVCAPTGAGKTVVGEFAVHQALRDGGACFYT 66
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + + +G+ VGLLTGD +IN +A +++MTTE+LRNM+Y ++
Sbjct: 67 TPIKALSNQKYHDLVDRYGEEQVGLLTGDVSINGDAPVVVMTTEVLRNMVY------ATS 120
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L + +V+DEVH+L+D SRG VWEE+I+ V ++ LSATV+NA+E GW+ +
Sbjct: 121 DRLDRLTHVVMDEVHFLADPSRGPVWEEVILNLDPSVILVSLSATVSNAEEFGGWLTTVR 180
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
G+T+LI ++ RPVPL Y + +LP+ ++ + Y+ + + +
Sbjct: 181 GQTDLIITTHRPVPLHQYMMVGSQMLPMFADQDRP-----DPGYVNRALLHAAGHAEDTG 235
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
RRR P+ D + +R+ MLPAI+FI
Sbjct: 236 RRRG----------------------------------PKRTDVVMRMRAAGMLPAIYFI 261
Query: 449 FNRRGCDAAVQYL--------------EDCNLLDEC--EMSEVELALKRFRILYPDAVRE 492
F+R GCDAA++ L E + +DE E+ +L + FR
Sbjct: 262 FSRNGCDAAMRQLLVDRIRLTTDDERDEILSTVDEGVHEIPTEDLGVLGFRQWR------ 315
Query: 493 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
+ L G AAHHAG LP ++ +E+LF RGL+KV FATETLA GINMPAR+ VL L
Sbjct: 316 ---RALGNGYAAHHAGMLPAFRHIVEDLFTRGLLKVCFATETLALGINMPARSVVLEKLV 372
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
K + LT + Q+ GRAGRRG D G+ V++ +P L PL S
Sbjct: 373 KFNGEAHVDLTPGQYTQLTGRAGRRGKDTEGNAVVLWSPGIDPYAVANLAQTRTYPLDST 432
Query: 613 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY-VGSNVMLAA 671
F Y M +NL+ R E++++++++SF Y ++V+ A
Sbjct: 433 FRPGYNMAVNLI-------------------GTRGYEDSQRILDRSFAQYQTAAHVVEEA 473
Query: 672 ------KDELCKIQKE---------TDVLTSEISDDA--------IDRKSRRLLSEAAYK 708
+ +L +QK+ DV EI D A +RK+RR E K
Sbjct: 474 ARLTQRRRDLAGLQKDLARTLKKIHADVTPEEIVDYARLRRELSVTERKARRNAGEEREK 533
Query: 709 EMANLQEELK 718
E A L L+
Sbjct: 534 ETAALLASLQ 543
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 1001 TQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNS 1060
T V+ GE A I E++L +A LR + L PA+LAA ++ V E K ++ S
Sbjct: 717 TAVVTEEGEKLARIHHESDLLVAQCLRRGVWDGLDPAELAAAASTCVFENRKETRPEDRS 776
Query: 1061 SIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM 1120
+ P+ +++ +N + +E+HG+ + F + W +G E +
Sbjct: 777 DVGVPTEALVDAVNAVQRIHRELTSDEERHGLPQTREPQTGFVTALHQWTAGAPL-EYCI 835
Query: 1121 DCA------LDDGDLARLLRRTIDLLAQI 1143
A L GD R R IDLL QI
Sbjct: 836 RAAEASGAELTPGDFVRWCNRVIDLLGQI 864
>gi|238059066|ref|ZP_04603775.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
sp. ATCC 39149]
gi|237880877|gb|EEP69705.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
sp. ATCC 39149]
Length = 933
Score = 308 bits (788), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 197/569 (34%), Positives = 278/569 (48%), Gaps = 78/569 (13%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN------- 201
+DE F +D FQR + +A RGS V+V APT +GKT++ E A +
Sbjct: 24 LDEFTLDLGFDLDDFQREACQALERGSGVLVCAPTGAGKTVVGEFAVHLALRGAPGRPAA 83
Query: 202 ---------QRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTE 252
+R+ FYTTP+KALSNQK+ + E +G +VGLLTGD+AIN +A +++MTTE
Sbjct: 84 ADGDDAPPARRKCFYTTPIKALSNQKYHDLVERYGVAHVGLLTGDNAINGDAPVVVMTTE 143
Query: 253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 312
+LRNMLY + + L + +V+DEVHYL+D RG VWEE+II+ P V ++ LSA
Sbjct: 144 VLRNMLY------AGSATLEGLAYVVMDEVHYLADRFRGGVWEEVIIHLPSSVTLVSLSA 197
Query: 313 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 372
TV+NA+E A W+ + G+T ++ S RPVPL + + L + +
Sbjct: 198 TVSNAEEFADWLVTVRGETAVVVSEHRPVPLWQHMLVGKRMFDLFHDADAARKHDVHPEL 257
Query: 373 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 432
L+ + ++ + G G + +R P ++D
Sbjct: 258 LRYTRETMRRLELG---------------EGRSAGPGGGRRGPRWRGPLR----PDIVD- 297
Query: 433 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 492
L +LPAI FIF+R GC AAVQ L ++ E + R++
Sbjct: 298 --RLDREGLLPAILFIFSRAGCAAAVQQCLAAGL----RLTSPEERAEIRRVVESRVTAI 351
Query: 493 PA-----------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 541
P + GL +G+AAHHAG LP++K +EELF RGLVK VFATETLA GINM
Sbjct: 352 PGEDLTVLGYWEWLDGLERGLAAHHAGMLPVFKEVVEELFVRGLVKAVFATETLALGINM 411
Query: 542 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 601
PAR VL L K + LT E Q+ GRAGRRGID GH V+V +P L
Sbjct: 412 PARCVVLERLVKFNGEAHVDLTPGEYTQLTGRAGRRGIDVEGHAVVVWSPETDPRHVAGL 471
Query: 602 LFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN 661
PL S F SY M +NL+ E AR L+E SF
Sbjct: 472 ASTRTYPLRSSFRPSYNMAVNLVGTVGA-------------------EPARALLESSFAQ 512
Query: 662 YVGSNVMLAAKDELCKIQKETDVLTSEIS 690
+ ++ ++ + + D +E +
Sbjct: 513 FQADRSVVGLARQVQRNTETIDAYGAEAA 541
>gi|419421527|ref|ZP_13961755.1| putative helicase [Propionibacterium acnes PRP-38]
gi|422396796|ref|ZP_16476827.1| HelY [Propionibacterium acnes HL097PA1]
gi|327329991|gb|EGE71745.1| HelY [Propionibacterium acnes HL097PA1]
gi|379978018|gb|EIA11343.1| putative helicase [Propionibacterium acnes PRP-38]
Length = 917
Score = 308 bits (788), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 190/524 (36%), Positives = 271/524 (51%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVARHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPVPL + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFG--QHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
R R + + FG Q P I + L + LPAI
Sbjct: 235 RRPRGRSGKGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQPSRIQVVRSLHKVNFLPAI 294
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGL 498
F+F+R GCDAAV L + +L+ + +L A +R L + R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.5 bits (114), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAGIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|334563714|ref|ZP_08516705.1| putative helicase [Corynebacterium bovis DSM 20582]
Length = 924
Score = 308 bits (788), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 187/539 (34%), Positives = 276/539 (51%), Gaps = 80/539 (14%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
Y F +D FQ ++EA G SV+V APT +GKT++ E A + + FYTTP+KALS
Sbjct: 44 YGFPLDAFQVEAVEAVDAGRSVLVCAPTGAGKTVVGEFAVFTALRHGGTCFYTTPIKALS 103
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+ + +G+ +VGLLTGD ++N +A +++MTTE+LRNM+Y S L +
Sbjct: 104 NQKYHDLVARYGEADVGLLTGDVSVNGDAPVVVMTTEVLRNMIY------SGSPRLDSLT 157
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELIT 335
+V+DEVH+L+D SRG VWEE I+ V ++ LSATV+NA+E GW+ + G T+++
Sbjct: 158 HVVMDEVHFLADRSRGPVWEEAILTLDPRVLLVSLSATVSNAEEFGGWLRTVRGDTDIVV 217
Query: 336 SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 395
++ RPVPL + T +LPL + +T+E K G RRR +++
Sbjct: 218 TTHRPVPLHQHLMVGTRVLPLFTGDTDDLGAVNRAAVAAAATAE----KQG--RRRGTKR 271
Query: 396 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCD 455
D + LR MLPAI+FIF+R GCD
Sbjct: 272 S----------------------------------DAVMRLRGDGMLPAIYFIFSRAGCD 297
Query: 456 AAVQYLEDCNLLDECEMSEVELALKRFRILYP--DAVREPAI---------KGLLKGVAA 504
AV+ L L+D ++ E + R + D + + + L G AA
Sbjct: 298 GAVRQL----LVDRIDLVTPEQREEILRTVDAGVDGIGREDLGILGFRQWRRALSHGFAA 353
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HHAG LP ++ +E+LF RGLVKV FATETLA GINMPAR+ VL L K + LT
Sbjct: 354 HHAGMLPAFRHIVEDLFSRGLVKVCFATETLALGINMPARSVVLEKLVKYNGEAHVDLTP 413
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+ Q+ GRAGRRG D GH V++ +P L PL S F Y M +NL+
Sbjct: 414 AQYTQLTGRAGRRGTDTVGHAVVLWSPGMDPYAVADLASTRSYPLDSTFRPGYNMAVNLI 473
Query: 625 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 683
A + ++A +++E+SF Y ++ +++ + +++ D
Sbjct: 474 -------------------ATKGYDDAHRILERSFAQYQIDGTVVERAEQVERRRRDLD 513
>gi|335050744|ref|ZP_08543696.1| type III restriction enzyme, res subunit [Propionibacterium sp.
409-HC1]
gi|342212890|ref|ZP_08705615.1| type III restriction enzyme, res subunit [Propionibacterium sp.
CC003-HC2]
gi|422495407|ref|ZP_16571694.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
gi|313813294|gb|EFS51008.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
gi|333769017|gb|EGL46171.1| type III restriction enzyme, res subunit [Propionibacterium sp.
409-HC1]
gi|340768434|gb|EGR90959.1| type III restriction enzyme, res subunit [Propionibacterium sp.
CC003-HC2]
Length = 917
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 190/524 (36%), Positives = 271/524 (51%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVARHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPVPL + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFG--QHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
R R + + FG Q P I + L + LPAI
Sbjct: 235 RRPRGRSGKGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQPSRIQVVRSLHKVNFLPAI 294
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGL 498
F+F+R GCDAAV L + +L+ + +L A +R L + R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.5 bits (114), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAGIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|312132702|ref|YP_004000041.1| superfamily ii RNA helicase [Bifidobacterium longum subsp. longum
BBMN68]
gi|311773662|gb|ADQ03150.1| Superfamily II RNA helicase [Bifidobacterium longum subsp. longum
BBMN68]
Length = 863
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 191/491 (38%), Positives = 270/491 (54%), Gaps = 47/491 (9%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + +A GS+V+V+APT +GKT++A+ A + FYTTP+KALSNQ
Sbjct: 45 FELDDFQTEANDALEAGSNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKALSNQ 104
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + + +G + VGLLTGD++IN EA I++MTTE+LRNMLY+ +++ + +
Sbjct: 105 KYHDLVDVYGPDKVGLLTGDTSINSEADIVVMTTEVLRNMLYERSTTLNA------LRYV 158
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
+LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 159 ILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVISE 218
Query: 338 RRPVPLTWYF------STKTALLPLLDEKGK-HMNRKLSLNYL-QLSTSEVKPYKDGGSR 389
RPVPL + T+ +L L G KL+ + +L + K + G
Sbjct: 219 HRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQLDRKAARRRGEE 278
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R + RK D K + RR V+D L L MLP I+FIF
Sbjct: 279 RPDKRKGFDRGRGGKGAKG---HAPKAERHTPRRW---AVVDELNFL---GMLPGIYFIF 329
Query: 450 NRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVREPAIKG 497
+R GCD AV+ + L DE EM E +L + + L R
Sbjct: 330 SRNGCDQAVEQCINAGLELTTDEEVTKIRRIVDEMVEGQLTQEDLKALQFSKFR----FA 385
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L K +
Sbjct: 386 LEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKLEKFDGT 445
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEPLVSQF 613
G + LT E Q+ GRAGRRGID GH ++V P A K ++ PL S F
Sbjct: 446 GHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY----PLHSSF 501
Query: 614 TASYGMVLNLL 624
++ M +NLL
Sbjct: 502 RPTFNMAVNLL 512
>gi|422537005|ref|ZP_16612893.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
gi|315080918|gb|EFT52894.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
Length = 917
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 191/524 (36%), Positives = 273/524 (52%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVARHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E GW+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGGWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G + S RRPVPL + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRGVVSERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAI 445
R R + + FG + R Q I + L ++LPAI
Sbjct: 235 RRPRGRSGKGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAI 294
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGL 498
F+F+R GCDAAV L + +L+ + +L A +R L + R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|339479241|gb|ABE95709.1| Helicase helY [Bifidobacterium breve UCC2003]
Length = 862
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 189/495 (38%), Positives = 273/495 (55%), Gaps = 44/495 (8%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D FQ + +A GS+V+V+APT +GKT++A+ A + FYTTP+
Sbjct: 39 FAATLPFDLDDFQTEANDALEAGSNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPI 98
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + + +G + VGLLTGD++IN EA I++MTTE+LRNMLY+ +++
Sbjct: 99 KALSNQKYHDLVDVYGPDKVGLLTGDTSINSEADIVVMTTEVLRNMLYEHSTTLTA---- 154
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ ++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G+T
Sbjct: 155 --LRYVILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGET 212
Query: 332 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
+L+ S RPVPL + T+ +L L G + N+ LN +L + +
Sbjct: 213 KLVISEHRPVPLEQHVIVQADEQTEPEVLDLYRRDG-NGNQTTKLN-AELINRLDQLDRK 270
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
RR R + ++ + + RR V+D L L MLP I
Sbjct: 271 AARRRGEERPDKRRGFKGKGGKGHRDRVPRPERHTPRRW---AVVDELNFL---GMLPGI 324
Query: 446 WFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVREP 493
+FIF+R GCD AV+ + L DE EM E +L + + L R
Sbjct: 325 YFIFSRNGCDQAVEQCINAGLELTTDEEVTRIRRIVDEMVEGQLTQEDLKALQFSKFR-- 382
Query: 494 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L K
Sbjct: 383 --FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKLEK 440
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEPL 609
+G + LT E Q+ GRAGRRGID GH ++V P A K ++ PL
Sbjct: 441 FDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY----PL 496
Query: 610 VSQFTASYGMVLNLL 624
S F ++ M +NLL
Sbjct: 497 HSSFRPTFNMAVNLL 511
>gi|291456805|ref|ZP_06596195.1| putative ATP-dependent RNA helicase [Bifidobacterium breve DSM
20213 = JCM 1192]
gi|291382082|gb|EFE89600.1| putative ATP-dependent RNA helicase [Bifidobacterium breve DSM
20213 = JCM 1192]
Length = 862
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 189/495 (38%), Positives = 273/495 (55%), Gaps = 44/495 (8%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D FQ + +A GS+V+V+APT +GKT++A+ A + FYTTP+
Sbjct: 39 FAATLPFDLDDFQTEANDALEAGSNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPI 98
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + + +G + VGLLTGD++IN EA I++MTTE+LRNMLY+ +++
Sbjct: 99 KALSNQKYHDLVDVYGPDKVGLLTGDTSINSEADIVVMTTEVLRNMLYEHSTTLTA---- 154
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ ++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G+T
Sbjct: 155 --LRYVILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGET 212
Query: 332 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
+L+ S RPVPL + T+ +L L G + N+ LN +L + +
Sbjct: 213 KLVISEHRPVPLEQHVIVQADEQTEPEVLDLYRRDG-NGNKTTKLN-AELINRLDQLDRK 270
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
RR R + ++ + + RR V+D L L MLP I
Sbjct: 271 AARRRGEERPDKRRGFKGKGGKGHKDRVPRPERHTPRRW---AVVDELNFL---GMLPGI 324
Query: 446 WFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVREP 493
+FIF+R GCD AV+ + L DE EM E +L + + L R
Sbjct: 325 YFIFSRNGCDQAVEQCINAGLELTTDEEVTRIRRIVDEMMEGQLTQEDLKALQFSKFR-- 382
Query: 494 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L K
Sbjct: 383 --FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKLEK 440
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEPL 609
+G + LT E Q+ GRAGRRGID GH ++V P A K ++ PL
Sbjct: 441 FDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY----PL 496
Query: 610 VSQFTASYGMVLNLL 624
S F ++ M +NLL
Sbjct: 497 HSSFRPTFNMAVNLL 511
>gi|269956566|ref|YP_003326355.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269305247|gb|ACZ30797.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
DSM 15894]
Length = 981
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 195/534 (36%), Positives = 272/534 (50%), Gaps = 52/534 (9%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E S F +D FQ ++ +A G V+V+APT +GKT++ E A +A + FYTTP
Sbjct: 39 EFRSELGFELDDFQVAACQALEDGRGVLVAAPTGAGKTVVGEFAVHLALAQGGKAFYTTP 98
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+ + G NVGLLTGD+ IN EA +++MTTE+LRNMLY +
Sbjct: 99 IKALSNQKYADLVRRHGVENVGLLTGDTTINGEAPVVVMTTEVLRNMLY------AGSRT 152
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DEVHYL+D RG VWEE+II+ VQ++ LSATV+NA+E W+ + G
Sbjct: 153 LEGLAFVVMDEVHYLADRFRGPVWEEVIIHLADHVQLVSLSATVSNAEEFGDWLEMVRGD 212
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP-------- 382
T ++ S RRPVPL W +A P +G L ++ + V P
Sbjct: 213 TAVVVSERRPVPL-WQHVVVSAREP----RGTPRLYDLYAGHVDPTDPGVNPPINPELHD 267
Query: 383 -------YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH 435
D R N R+ + G+ + + P +
Sbjct: 268 VFRTSGRRADDDGRSGNGRRGSGQRGPGDRGYRGRGGYRPGVAGLAPQRRTPPRFAVVDA 327
Query: 436 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVE---LALKRFRILYPDAVRE 492
L + +LPAI+FIF+R GC+ AVQ L E E L +R + P+ +
Sbjct: 328 LDADALLPAIYFIFSRAGCEGAVQQCLTAGLRLTSPQEEAEIRRLVEQRTATIPPEDLDV 387
Query: 493 PA----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
++ L +G+AAHHAG LP++K +E+LF RGLVKVVFATETLA GINMPAR+ VL
Sbjct: 388 LGYWSWLQALARGIAAHHAGLLPVFKETVEDLFARGLVKVVFATETLALGINMPARSVVL 447
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
L K + +T E Q+ GRAGRRGID GH V+V L P
Sbjct: 448 EKLVKWDGTAHQPVTPGEYTQLTGRAGRRGIDVEGHAVVVDHTGLDPVALAGLASRRTYP 507
Query: 609 LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
L S F +Y M +NL+ ++V H + AR+++E SF +
Sbjct: 508 LRSSFRPTYNMAVNLV--SQVGH-----------------DRAREVLETSFAQF 542
Score = 47.4 bits (111), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 16/199 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV---------IFPL 1007
E+ +L +RL +RIE S + F + V+ R LD + +
Sbjct: 757 ERHDQLAGEHRRLVQRIEGRTGSVARIFDKTCTVLETLRYLDRSDDAGSDGRGELQVTAD 816
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 1067
G + EN+L LA LR L LAA +++V G + ++ + Y P
Sbjct: 817 GAWLRRVYAENDLLLAECLRRGTWDGLDAPGLAAAVSTVVYSGRR----EDAAEPYVPGG 872
Query: 1068 TVINVINVLDEHR---SSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCAL 1124
+ LD S +L+E HG++ LD V WA G ++ L
Sbjct: 873 PHGRLAQALDATVRVWSEVTDLEELHGLDATGPLDLGIVAPVHRWAGGKGLDAVLRGTDL 932
Query: 1125 DDGDLARLLRRTIDLLAQI 1143
GD R ++ +D+L Q+
Sbjct: 933 AAGDFVRWCKQVVDVLDQL 951
>gi|325676819|ref|ZP_08156492.1| DEAD/DEAH box family ATP-dependent RNA helicase [Rhodococcus equi
ATCC 33707]
gi|325552367|gb|EGD22056.1| DEAD/DEAH box family ATP-dependent RNA helicase [Rhodococcus equi
ATCC 33707]
Length = 898
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 215/638 (33%), Positives = 307/638 (48%), Gaps = 117/638 (18%)
Query: 146 MIDVDELASI---YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ 202
M D LAS F +D FQ + A G V+V APT +GKT++ E A + +
Sbjct: 1 MTTNDRLASFTSQLSFPLDPFQLEACAALEAGHGVLVCAPTGAGKTVVGEFAVHLALESG 60
Query: 203 RRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSV 262
R+ FYTTP+KALSNQKF E +G VGLLTGD++IN +A +++MTTE+LRNMLY
Sbjct: 61 RKCFYTTPIKALSNQKFNELSARYGSGAVGLLTGDTSINSDAPVVVMTTEVLRNMLY--- 117
Query: 263 GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAG 322
+ L + +V+DEVHYL+D RG VWEE+I++ P++V+++ LSATV+NA+E
Sbjct: 118 ---ADSPTLRGLSHVVMDEVHYLADRFRGAVWEEVILHLPEDVRLVSLSATVSNAEEFGA 174
Query: 323 WIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKG---------------KHMNRK 367
W+ + G T ++ RP+PL+ + L L D K +H+ ++
Sbjct: 175 WMETVRGDTTIVVDETRPIPLSQHILVGRRLFDLFDAKAAAGASHQVVVDPDLVRHVKQR 234
Query: 368 LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 427
L+L+ + + +P GG R N R P
Sbjct: 235 LALDRM----NSWEPRGRGGYRS----------------------------NDFRPLPRP 262
Query: 428 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK----RFR 483
+VI L +LPAI FIF+R GC+AA L +C S++ L R R
Sbjct: 263 EVIA---RLDEEGLLPAITFIFSRAGCEAA---------LAQCVRSKLRLTTPEQTARIR 310
Query: 484 ILYPDAVRE---PAI---------KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 531
+ + R P + + L +G AAHHAG LP +K +EELF GLV+ VFA
Sbjct: 311 EIIDEHTRHLPRPDLEVLGYWSWREALERGFAAHHAGMLPAFKETVEELFVNGLVRAVFA 370
Query: 532 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591
TETLA GINMPAR+ VL L K +LT E Q+ GRAGRRGID GH V++ P
Sbjct: 371 TETLALGINMPARSVVLERLVKYNGDTHAELTPGEYTQLTGRAGRRGIDVEGHAVVLWQP 430
Query: 592 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 651
+ L PL S F Y M +NL+ D M A+ E+
Sbjct: 431 GVEPTDVAGLASTRTFPLRSSFRPGYNMSINLV------------DRMGAV-------ES 471
Query: 652 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMA 711
R L+E+SF + ++ I++ LT D + + ++ Y E
Sbjct: 472 RALLERSFAQFQADRSVVGLTR---SIERNEAALT--------DLRDKLGGADGEYFEYF 520
Query: 712 NLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENG 749
++E+L++ +R L R+ R A L D G
Sbjct: 521 RIREQLRSRERM---LERQGRADRRGASVSSLVDLRRG 555
>gi|212715833|ref|ZP_03323961.1| hypothetical protein BIFCAT_00735 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661200|gb|EEB21775.1| hypothetical protein BIFCAT_00735 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 865
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 198/501 (39%), Positives = 275/501 (54%), Gaps = 56/501 (11%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A F +D+FQ + EA G++V+V+APT +GKT++A+ A + FYTTP
Sbjct: 43 EFARSMSFELDEFQLQANEALETGNNVLVAAPTGAGKTVVADFAIYLAQTRNVKAFYTTP 102
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+ + +G + VGLLTGD++IN EA I++MTTE+LRNMLY+ V+ E+
Sbjct: 103 IKALSNQKYHDLVAQYGADKVGLLTGDTSINSEANIVVMTTEVLRNMLYEH--SVTLEA- 159
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+ ++LDEVHYL+D RG VWEE+II+ P+ V+II LSATV+N + + WI + G+
Sbjct: 160 ---LRYVILDEVHYLADRFRGPVWEEVIIHLPENVKIIGLSATVSNVEVFSEWIESVRGE 216
Query: 331 TELITSSRRPVPLTWYF------STKTALLPLL--DEKGKH---MNRKLSLNYLQLSTSE 379
T L+ S +RPVPL + T+ L+ L D G+ +N +L QL
Sbjct: 217 TTLVVSEKRPVPLEQHVLVQADDHTEPELIDLYRRDANGEQTVKLNAQLVNRLDQL---- 272
Query: 380 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 439
D + RR + D +L K + RR V+D L L
Sbjct: 273 -----DRQAARRRGEERPDRRRPKGKGGRWNERLHKAERHTPRRW---AVVDELNFL--- 321
Query: 440 DMLPAIWFIFNRRGCDAAVQYLEDCNL----LDEC--------EMSEVELALKRFRILYP 487
DMLP I+FIF+R GCD AV + L DE EM E +L+ + + L+
Sbjct: 322 DMLPGIYFIFSRNGCDQAVDQCINAGLELTTSDEVRRIRRIVDEMVEGQLSQEDLKALHF 381
Query: 488 DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
R L +G A HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V
Sbjct: 382 SQFR----FALEEGFAPHHAGMVALFRQIVERLFEEGLVKMVFATETLALGINMPARCVV 437
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLF 603
+ L K +G + LT E Q+ GRAGRRGID GH V+V P A K ++
Sbjct: 438 VEKLEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAVVVDHHGFVPATAAALSSKRVY 497
Query: 604 AGVEPLVSQFTASYGMVLNLL 624
PL S F ++ M +NLL
Sbjct: 498 ----PLHSSFRPTFNMAVNLL 514
>gi|336325573|ref|YP_004605539.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
gi|336101555|gb|AEI09375.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
Length = 877
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 194/567 (34%), Positives = 289/567 (50%), Gaps = 85/567 (14%)
Query: 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236
++V+APT +GKT++ E A NQ FYTTP+KALSNQKF + + +G+ NVGLLTG
Sbjct: 1 MLVAAPTGAGKTVVGEFAVFTAFHNQGSCFYTTPIKALSNQKFHDLCDQYGEANVGLLTG 60
Query: 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEE 296
D IN +A I++MTTE+LRNM+YQ L + +V+DEVH+L+D SRG VWEE
Sbjct: 61 DVTINGDAPIVVMTTEVLRNMIYQ------GSDRLRTLTHVVMDEVHFLADKSRGPVWEE 114
Query: 297 IIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPL 356
I+ +V ++ LSATV+N +E GW+ + G+T++I + RP+PL+ + +PL
Sbjct: 115 AILNLDPDVILVSLSATVSNVEEFGGWLSTVRGRTDIILTEHRPIPLSQFMMVGRQFIPL 174
Query: 357 LDE---KGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQL 413
+ +GK + LS + + ++ G RR
Sbjct: 175 FQDQATRGKAADGSLSPAINRAVVAAAAKAEESGKRR----------------------- 211
Query: 414 SKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECE 471
+RS V HL + +MLPAI+FIF+R GCDAAV+ L + + +
Sbjct: 212 ------GPKRSAVA------LHLDAANMLPAIYFIFSRVGCDAAVKQLLTDRVDFTTPAQ 259
Query: 472 MSEV---------ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQ 522
SE+ L + +L R + + +G AAHHAG LP ++ +E+LF
Sbjct: 260 RSEILKTIDEGVEGLTQEDLNVLGFRQWR----RAVSRGFAAHHAGMLPAFRHIVEDLFA 315
Query: 523 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 582
RGL+KV FATETLA GINMPAR+ VL L K + LT + Q+ GRAGRRGID +
Sbjct: 316 RGLLKVCFATETLALGINMPARSVVLEKLIKFNGEAHVDLTPGQYTQLTGRAGRRGIDTK 375
Query: 583 GHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKAL 642
G+ V++ L PL S F Y M +NL+
Sbjct: 376 GNAVVLWAQGIDPHAVADLASTRTYPLDSTFRPGYNMAVNLI------------------ 417
Query: 643 QAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAID--RKSRR 700
+ L E+ +L+++SF Y ++ A + + + +++ D E+ + D RK+ R
Sbjct: 418 -NTKGLTESHRLLQRSFAQYQADGTIVEAAEAVERRRRQLDEAEDELQNVITDFRRKAAR 476
Query: 701 LLSE-----AAYKEMANLQEELKAEKR 722
S+ A + A L+ EL E+R
Sbjct: 477 FESDLESDTKAVVDYARLRRELSQEER 503
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 19/146 (13%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIK---VRLWKNNSSIYE 1064
GE A I E++L +A LR I +L PA+LAAV ++ V E K ++ E
Sbjct: 712 GERLARIHHESDLLIAQCLRRGIWDNLDPAELAAVASTCVFENRKESSAEAALPTEALKE 771
Query: 1065 PSTTVINVINVL--DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-- 1120
+ + + N L DE R + +E + F+ V W +G +
Sbjct: 772 AVSHTLRIYNELASDEQRHRVPQTREP---------ELGFATAVHQWTAGAPLEYCLQAA 822
Query: 1121 ---DCALDDGDLARLLRRTIDLLAQI 1143
L GD R RR IDLL QI
Sbjct: 823 EASGAVLTPGDFVRWCRRVIDLLDQI 848
>gi|384196943|ref|YP_005582687.1| type III restriction enzyme, res subunit [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|333110199|gb|AEF27215.1| type III restriction enzyme, res subunit [Bifidobacterium breve
ACS-071-V-Sch8b]
Length = 862
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 189/495 (38%), Positives = 273/495 (55%), Gaps = 44/495 (8%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D FQ + +A GS+V+V+APT +GKT++A+ A + FYTTP+
Sbjct: 39 FAATLPFDLDDFQTEANDALEAGSNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPI 98
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + + +G + VGLLTGD++IN EA I++MTTE+LRNMLY+ +++
Sbjct: 99 KALSNQKYHDLVDVYGPDKVGLLTGDTSINSEADIVVMTTEVLRNMLYEHSTTLTA---- 154
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ ++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G+T
Sbjct: 155 --LRYVILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGET 212
Query: 332 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
+L+ S RPVPL + T+ +L L G + N+ LN +L + +
Sbjct: 213 KLVISEHRPVPLEQHVIVQADEQTEPEVLDLYRRDG-NGNQTTKLN-AELINRLDQLDRK 270
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
RR R + ++ + + RR V+D L L MLP I
Sbjct: 271 AARRRGEERPDKRRGFKGKGGKGHRDRVPRPERHTPRRW---AVVDELNFL---GMLPGI 324
Query: 446 WFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVREP 493
+FIF+R GCD AV+ + L DE EM E +L + + L R
Sbjct: 325 YFIFSRNGCDQAVEQCINAGLELTTDEEVTRIRRIVDEMMEGQLTQEDLKALQFSKFR-- 382
Query: 494 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L K
Sbjct: 383 --FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKLEK 440
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEPL 609
+G + LT E Q+ GRAGRRGID GH ++V P A K ++ PL
Sbjct: 441 FDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY----PL 496
Query: 610 VSQFTASYGMVLNLL 624
S F ++ M +NLL
Sbjct: 497 HSSFRPTFNMAVNLL 511
>gi|384104143|ref|ZP_10005096.1| ATP-dependent helicase [Rhodococcus imtechensis RKJ300]
gi|383838337|gb|EID77718.1| ATP-dependent helicase [Rhodococcus imtechensis RKJ300]
Length = 911
Score = 307 bits (786), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 203/582 (34%), Positives = 299/582 (51%), Gaps = 59/582 (10%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
++D ++ F +D FQ ++ A G V+V APT +GKT++ E A +A R+ FY
Sbjct: 13 ELDVFSAQLGFVLDPFQINACRALEGGHGVLVCAPTGAGKTVVGEFAVHLALAAGRKCFY 72
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK+ E +G + VGLLTGDS+IN +A +++MTTE+LRNMLY +
Sbjct: 73 TTPIKALSNQKYAELVRRYGKDTVGLLTGDSSINSDAPVVVMTTEVLRNMLY------AD 126
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
L + +V+DEVH+L+D RG VWEE+I++ ++V+++ LSATV+NA+E W+ +
Sbjct: 127 SPALRGLSHVVMDEVHFLADRFRGAVWEEVILHLSEDVRLVSLSATVSNAEEFGAWMETV 186
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G T ++ RP+PL + L L D + + + +L L + V+ K
Sbjct: 187 RGDTTVVVDENRPIPLWQHIMVGKRLFDLFDTRARSGD---ALKDLVVDQDLVRHVK--- 240
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+R + + AD S + + + R P+VI L +LPAI F
Sbjct: 241 --QRQALERAD--SWETRGRGRRGGGFSSDFRPLPR---PEVIS---RLDDEGLLPAITF 290
Query: 448 IFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLK 500
IF+R GCDAA+ Q L +L +++E+ + P A E K L +
Sbjct: 291 IFSRAGCDAALAQCLRSRLDLTTPEQVAEIRTIIDAHTAELPKADLEVLGYWEWRKALER 350
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L K
Sbjct: 351 GLAAHHAGMLPAFRQTVEELFVKGLVRAVFATETLALGINMPARTVVLERLVKYNGEAHA 410
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
+LT E Q+ GRAGRRGID GH V++ P + L PL S F Y M
Sbjct: 411 ELTPGEYTQLTGRAGRRGIDIEGHAVVLWQPGVEPVDVAGLASTRTFPLRSSFRPGYNMT 470
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
+NL+ D M A E+R L+E+SF + ++ + + +
Sbjct: 471 INLV------------DRMGA-------AESRALLERSFAQFQADRSVVGLTRGIERNEA 511
Query: 681 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
L + + + Y E A L+EEL + +R
Sbjct: 512 ALTTLRERLGGE-----------DGEYFEYARLREELSSRER 542
>gi|359423041|ref|ZP_09214186.1| putative helicase [Gordonia amarae NBRC 15530]
gi|358241724|dbj|GAB03768.1| putative helicase [Gordonia amarae NBRC 15530]
Length = 948
Score = 307 bits (786), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 200/526 (38%), Positives = 277/526 (52%), Gaps = 52/526 (9%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D FQ + A G V+V APT +GKT++ E A +A + FYTTP+
Sbjct: 33 FAAGLRFALDPFQHRACVALEAGHGVLVCAPTGAGKTIVGEFAVHLALAAGTKCFYTTPI 92
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + G VGLLTGD AIN A +++MTTE++RNM+Y + L
Sbjct: 93 KALSNQKYADLVAVHGAAAVGLLTGDVAINPGAPVVVMTTEVVRNMIY------AGSPAL 146
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ +V+DEVH+L+D RG VWEE+I++ V+++ LSATV+NA+E WI + G T
Sbjct: 147 EGLSHVVMDEVHFLADRFRGAVWEEVILHLDPAVRVVSLSATVSNAEEFGDWIKTVRGDT 206
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR-- 389
+I RPVPL+ + + L E H P K GG
Sbjct: 207 TVIVDDHRPVPLSQHVLVGNRIFDLY-EHAPH-----------------GPGKKGGREVN 248
Query: 390 ---RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD-MLPAI 445
+R R N + S G+ + + R+ P V+ +L RD +LPAI
Sbjct: 249 ADLKRYIRHKMLTNDDRFSDSRGRGRGRGHRGGGGPRASRPDVVASL----DRDGLLPAI 304
Query: 446 WFIFNRRGCDAAVQYLEDC--NLLDECEMSEV-ELALKRFRILYPDAVREPAIK----GL 498
FIF+R+GCD A+ + +LL+ E++ V E+ K + P ++ GL
Sbjct: 305 MFIFSRKGCDGALAQCQRSRLSLLEPHEVAAVDEIVDKHLTDIAPADAEILGVEQWRAGL 364
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G AAHHAG LP ++ +EELF GLVKVVFATETLA GINMPAR+ VL L K
Sbjct: 365 RRGFAAHHAGLLPTFRHAVEELFAGGLVKVVFATETLALGINMPARSVVLERLVKYNGEA 424
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+ LT E Q+ GRAGRRGID GH +++ TP E+ L A PL S F Y
Sbjct: 425 HVDLTPGEFTQLTGRAGRRGIDTEGHAIVLWTPEVVPEQLAGLAGARTFPLRSSFVPEYN 484
Query: 619 MVLNL-----LAGAK-VMHLSNESDDMKALQAGRSLEEARKLVEQS 658
M +NL LAGA+ ++H S QA RS+ + V+Q+
Sbjct: 485 MAVNLLGRMGLAGAQELLHRS-----FAQFQADRSVVGQARKVDQA 525
>gi|392578706|gb|EIW71834.1| hypothetical protein TREMEDRAFT_27449 [Tremella mesenterica DSM
1558]
Length = 1283
Score = 307 bits (786), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 198/561 (35%), Positives = 291/561 (51%), Gaps = 67/561 (11%)
Query: 119 PAPSWREEFK------WQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
PAP+ + K W V + + F +E+ V E+A Y F +D FQ+ ++
Sbjct: 248 PAPTSSKPIKVVAKKEWAHVVDVNKHLLNF-HEL--VPEMARQYPFELDNFQKEAVYRLE 304
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
G SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+F+ +F + VG
Sbjct: 305 MGDSVFVAAHTSAGKTVVAEYAIALAAKHMTRAIYTSPIKALSNQKFRDFKNSFDPSTVG 364
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
+LTGD IN E LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG
Sbjct: 365 ILTGDVQINPEGSCLIMTTEILRSMLYKGADLIR------DVEFVIFDEVHYVNDAERGV 418
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKT 351
VWEE+II P V II LSATV N E A W+G+ K +I++ RPVPL Y
Sbjct: 419 VWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTKKKDIYVISTPMRPVPLEHYLYAGK 478
Query: 352 ALLPLLDEKGKHMNRKL-----SLNYLQLSTSE---VKPYKDGGSRRRNSRKHADMNSN- 402
L +++ K ++ SL Q E + P R +++ K D+ +
Sbjct: 479 ELHKIVNSKSLFLSSGYTSASESLKRKQDKERELAGLPPLSKTNGRGQSTTKPKDLPTGK 538
Query: 403 ------------NIVTSFGQHQLSKNSIN-AIRRSQVP------------QVIDTLW--- 434
++ G + S +++N ++ S P Q+ +W
Sbjct: 539 SAPFTKIGAGRTHLNRGGGPNGSSIHTVNPTVKHSNAPLGKGGGFGRSKGQLDQNVWTHL 598
Query: 435 --HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL----ALKRFR---IL 485
HL+ ++LP + F+F+++ C+ L +L ++ E SEV L AL R + +
Sbjct: 599 VNHLKKGNLLPVVNFVFSKKKCEEYAGSLSALDLCNQKEKSEVHLTWEKALNRLKGTDKV 658
Query: 486 YPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 544
P +R ++ L+ +G+ HH G LP+ K +E LF RGLVKV+FATET A G+NMPA+
Sbjct: 659 LPQILR---MRDLMSRGIGVHHGGLLPLVKEIVEILFSRGLVKVLFATETFAMGVNMPAK 715
Query: 545 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLF 603
+ V S + K L E QMAGRAGRRG+D G V +LV E +++
Sbjct: 716 SVVFSGIRKHDGQSFRNLLPGEYTQMAGRAGRRGLDTTGTVIILVGDELPTQHELQEMML 775
Query: 604 AGVEPLVSQFTASYGMVLNLL 624
L SQF +Y M+LNLL
Sbjct: 776 GVPNRLTSQFRLTYNMILNLL 796
>gi|25028174|ref|NP_738228.1| helicase [Corynebacterium efficiens YS-314]
gi|259507232|ref|ZP_05750132.1| helicase, C-:DEAD/DEAH box helicase [Corynebacterium efficiens
YS-314]
gi|23493458|dbj|BAC18428.1| putative helicase [Corynebacterium efficiens YS-314]
gi|259165175|gb|EEW49729.1| helicase, C-:DEAD/DEAH box helicase [Corynebacterium efficiens
YS-314]
Length = 940
Score = 307 bits (786), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 192/558 (34%), Positives = 290/558 (51%), Gaps = 49/558 (8%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ E + F +D FQ A V+V APT +GKT++ E A ++ + FYT
Sbjct: 11 LSEFVADLGFDLDDFQIQGCRAVEGDHGVLVCAPTGAGKTIVGEFAVSLALSRGTKCFYT 70
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + G + VGLLTGD +IN +A+I++MTTE+LRNM+Y
Sbjct: 71 TPIKALSNQKYHDLVAKHGADAVGLLTGDVSINHDAEIVVMTTEVLRNMIY------GQS 124
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L + +V+DE+H+L+D SRG VWEE+I+ + V+II LSATV+N++E W+ +
Sbjct: 125 FALERLSHVVMDEIHFLADASRGAVWEEVILNLDESVKIIGLSATVSNSEEFGEWLTTVR 184
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVKPYKDG 386
G T++I + RPVPL Y + +LPL E G +N++L +L++ +P +
Sbjct: 185 GDTQVIVTDHRPVPLDQYMMVQRKVLPLF-EPGTDGRLNKQLEATIDRLNSQASEPGRSE 243
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNS--INAIRRSQVPQVIDTLWHLRSRDMLPA 444
R A + Q++ ++ S + R + + L L+ +MLPA
Sbjct: 244 YRSGEGFRTRAKGGRDRGRDDGRQNRDTRRSGQVREQDRHRPLGRPEVLRILQGMNMLPA 303
Query: 445 IWFIFNRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA-------- 494
I FIF+R GCD A+ L+ D+ E E+ RI+ V P
Sbjct: 304 ITFIFSRAGCDGALYQCLRSKLILTDQDEAQEIA------RIIDAGVVGIPEEDLQVLNF 357
Query: 495 ---IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L
Sbjct: 358 KQWRSALMRGFAAHHAGMLPAFRHIVEELFVKGLVRAVFATETLALGINMPARTVVLEKL 417
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611
K G + LT + Q+ GRAGRRGID G+ V+ +P L PL+S
Sbjct: 418 VKFDGEGHVDLTPGQYTQLTGRAGRRGIDTLGNAVVQWSPAMDPRFVAGLASTRTYPLIS 477
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 671
F Y M +NLL K + E++ +L+E+SF + ++
Sbjct: 478 TFQPGYNMSVNLL---------------KTI----GYEQSLRLLEKSFAQFQADGSVVGD 518
Query: 672 KDELCKIQKETDVLTSEI 689
E+ + +++ + L +++
Sbjct: 519 VREIERAERKVEELRAQL 536
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 14/216 (6%)
Query: 955 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI---NTQVIFPLGETA 1011
T E++ R + +LT +++ + + F RI +++ E +D + VI GE
Sbjct: 719 TAERMLRKQRDLNKLTGTVDRARETLGRTFERILSLLSEMDYVDYADPDNPVITEEGERL 778
Query: 1012 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 1071
A I E++L +A L+ I L PA+LA V + E + + S + +
Sbjct: 779 AKIHNESDLLVAQCLKRGIWEGLDPAELAGVVSMCTFENRR----ETGGSPEAVTEAMAE 834
Query: 1072 VINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDD 1126
+N + S ++ + +H + + ++ F+ + WA+G M A L
Sbjct: 835 AMNHTERIWSELVDDERRHRLPLTRQPEAGFAMAIHQWAAGAPLGYCMAAAAENGAELTP 894
Query: 1127 GDLARLLRRTIDLLAQIPKLPDVDQ--RLQKNAVDA 1160
GD R R+ IDLL Q+ K D+ R + +DA
Sbjct: 895 GDFVRWCRQVIDLLEQVAKTSYSDEMARTARQGIDA 930
>gi|417942181|ref|ZP_12585458.1| Putative ATP-dependent RNA helicase [Bifidobacterium breve CECT
7263]
gi|376167566|gb|EHS86402.1| Putative ATP-dependent RNA helicase [Bifidobacterium breve CECT
7263]
Length = 862
Score = 307 bits (786), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 189/495 (38%), Positives = 273/495 (55%), Gaps = 44/495 (8%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ F +D FQ + +A GS+V+V+APT +GKT++A+ A + FYTTP+
Sbjct: 39 FAATLPFDLDDFQTEANDALEAGSNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPI 98
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + + +G + VGLLTGD++IN EA I++MTTE+LRNMLY+ +++
Sbjct: 99 KALSNQKYHDLVDVYGPDKVGLLTGDTSINSEADIVVMTTEVLRNMLYEHSTTLTA---- 154
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ ++LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G+T
Sbjct: 155 --LRYVILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGET 212
Query: 332 ELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
+L+ S RPVPL + T+ +L L G + N+ LN +L + +
Sbjct: 213 KLVISEHRPVPLEQHVIVQADEQTEPEVLDLYRRDG-NGNQTTKLN-AELINRLDQLDRK 270
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
RR R + ++ + + RR V+D L L MLP I
Sbjct: 271 AARRRGEERPDKRRGFKGKGGKGHKDRVPRPERHTPRRW---AVVDELNFL---GMLPGI 324
Query: 446 WFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVREP 493
+FIF+R GCD AV+ + L DE EM E +L + + L R
Sbjct: 325 YFIFSRNGCDQAVEQCINAGLELTTDEEVTRIRRIVDEMMEGQLTQEDLKALQFSKFR-- 382
Query: 494 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L K
Sbjct: 383 --FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKLEK 440
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEPL 609
+G + LT E Q+ GRAGRRGID GH ++V P A K ++ PL
Sbjct: 441 FDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY----PL 496
Query: 610 VSQFTASYGMVLNLL 624
S F ++ M +NLL
Sbjct: 497 HSSFRPTFNMAVNLL 511
>gi|395334752|gb|EJF67128.1| antiviral helicase [Dichomitus squalens LYAD-421 SS1]
Length = 1261
Score = 307 bits (786), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 205/596 (34%), Positives = 300/596 (50%), Gaps = 77/596 (12%)
Query: 83 DDDDEEA---ADEYDDVSGEVSDEIQQSDDEFEVS-SDSSPAPSWREEFKWQRVEKL--C 136
DD D A +DE D + +++ D+ S S +P P+ R + + V+K
Sbjct: 200 DDSDGHAYGRSDEETDGRMPLVNDMTDIDELLPTSRSHLNPVPTARRQLRRANVQKRDWA 259
Query: 137 NEV---KEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEA 193
+EV K N V E+A Y F +D FQ+ ++ G SV V+A TS+GKT++AE
Sbjct: 260 HEVDVNKPMTNFHELVPEMAHKYPFELDTFQKEAVYHLEMGDSVFVAAHTSAGKTVVAEY 319
Query: 194 AAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEI 253
A + R YT+P+KALSNQK+R+F++TFG +VG+LTGD IN EA LIMTTEI
Sbjct: 320 AIALAAKHMTRAIYTSPIKALSNQKYRDFKQTFGAASVGILTGDVQINPEANCLIMTTEI 379
Query: 254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSAT 313
LR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P V II LSAT
Sbjct: 380 LRSMLYKGADLIR------DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSAT 433
Query: 314 VANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 372
V N E A W+G+ K +I++++RPVPL Y L ++D N+
Sbjct: 434 VPNTKEFADWVGRTKKKDIYVISTAKRPVPLEHYLYAGRDLHKIVDA---------DRNF 484
Query: 373 LQLSTSEVKPYKDGGSRRRNSRKHAD-------MNSNNIVTSFGQHQLSKNSI------- 418
+ ++ K +D R+++ + A M + GQ +
Sbjct: 485 I---SAGYKDAQDALRRKQDKEREAQGLPPVQRMGARAAAPQRGQRGGPQARGGGQRGGP 541
Query: 419 ---NAIRRSQVPQ----------------VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQ 459
A R P + L +L+ R +LP + F F+++ C+
Sbjct: 542 PLRGAPARGATPSRGGGSGRTFHQPDKNLYVHLLGNLKKRALLPVVVFTFSKKRCEENAG 601
Query: 460 YLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKG----LLKGVAAHHAGCLPIWK 514
L + +L E SE+ +A+++ + R+ P I+ L +G+ HH G LPI K
Sbjct: 602 TLTNLDLSTSVEKSEIHVAVEKALSRLKGSDRQLPQIRRMRELLSRGIGVHHGGLLPIVK 661
Query: 515 SFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRA 574
+E LF RGLVKV+FATET A G+NMPA+ V S + K + E QMAGRA
Sbjct: 662 EVVEILFARGLVKVLFATETFAMGVNMPAKCVVFSHIRKHDGRSFRDILPGEYTQMAGRA 721
Query: 575 GRRGIDNRGHVVLVQTPYEGAEEC------CKLLFAGVEPLVSQFTASYGMVLNLL 624
GRRG+D G V++V +EC ++ L SQF +Y M+LNLL
Sbjct: 722 GRRGLDATGTVIIVAN-----DECPEQTTLSHMILGTPSKLQSQFRLTYNMILNLL 772
>gi|354546203|emb|CCE42932.1| hypothetical protein CPAR2_205750 [Candida parapsilosis]
Length = 1251
Score = 307 bits (786), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 209/607 (34%), Positives = 311/607 (51%), Gaps = 65/607 (10%)
Query: 67 LTDADEAADEYDDDIDDDDDEEAADEY--DDVSGEVSDEIQQSDDEFEVSSDSSPAPSWR 124
L + ++ + E +D D E + + D +GE + +S F+ + P
Sbjct: 185 LAELEDLSKEEEDQNGGDFTESIKEHFLVDGTNGETASAGSKSRLPFDANEIEGLVPFDY 244
Query: 125 EEFK-----------WQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLR 173
+ FK W V L +++++F NE+ V +A + F +D FQ+ ++ +
Sbjct: 245 KSFKYDDRRPVEKRDWAHVVDLDHKIEDF-NEL--VPNMARKWPFELDTFQKEAVFHLEQ 301
Query: 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGL 233
G SV V+A TS+GKT++AE A N + YT+P+KALSNQKFR+F+ETF D +VGL
Sbjct: 302 GDSVFVAAHTSAGKTVVAEYAIAMAKRNMTKCIYTSPIKALSNQKFRDFKETFKDIDVGL 361
Query: 234 LTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTV 293
+TGD IN EA LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++DI RG V
Sbjct: 362 ITGDVQINPEANCLIMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDIDRGVV 415
Query: 294 WEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTA 352
WEE+II P V+ I LSATV N E A W+G+ K +I++ +RPVPL + S K
Sbjct: 416 WEEVIIMLPDHVKYILLSATVPNTFEFANWVGRTKQKDIYVISTPKRPVPLEIFISAKNK 475
Query: 353 LLPLLDEKGKHMNR--KLSLNYLQLSTSEVK-PYKDGGSRRRNSRKHADMNSNNIVT--- 406
L ++D + + K N L+ S+ + P GS R N VT
Sbjct: 476 LFKVVDSSRRFLENEFKAHKNLLEAGNSKKELPSTTMGSGSRGGPGGTARGGNRAVTRGR 535
Query: 407 ------------------SFGQHQLSKN-SINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
++G K + ++ P+++ +++S ++LPA+ F
Sbjct: 536 GGARGGGRGGGGRGGAANNYGNFSGPKRFGTDGPNKNTWPELVH---YMKSNNLLPAVIF 592
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGV 502
+F+++ C+ L + E SE+ + + R RE P I + L +G+
Sbjct: 593 VFSKKKCEMYADSLHGVDFCTAKEKSEIHMFIDRAVGRLKKEDRELPQIIKIREMLSRGI 652
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
A HH G LPI K IE LF + LVKV+FATET A G+N+P RT V SS K G L
Sbjct: 653 AVHHGGLLPIVKECIEILFAKTLVKVLFATETFAMGLNLPTRTVVFSSTRKHDGRGFRNL 712
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQ-----TPYEGAEECCKLLFAGVEPLVSQFTASY 617
E QM+GRAGRRG+D G V+++ +P + E + L SQF +Y
Sbjct: 713 LPGEFTQMSGRAGRRGLDATGTVIVMAYNEALSPTDFKE----VALGTPTKLQSQFRLTY 768
Query: 618 GMVLNLL 624
M+LNLL
Sbjct: 769 NMILNLL 775
Score = 40.0 bits (92), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG---------IKVRLWKN 1058
G A I EL L ++ + L D +PA++ A+ + V EG I RL +
Sbjct: 1079 GRVACEINSGWELILTELILDNFLGDFEPAEIVALLSCFVYEGRTQEEEPPLITPRLERG 1138
Query: 1059 NSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFS--GMVEAWASGLTWR 1116
+ I+E + ++ V E R S L +E+ VE +F+ +V WA+GL++
Sbjct: 1139 KARIHEIAD---KLLRVYIEKRVS-LTSEEEEFVE-----SKRFALVNVVYEWANGLSFN 1189
Query: 1117 EMMMDCALDDGDLARLLRRTIDLLAQI 1143
E+M +G + R++ R ++ ++
Sbjct: 1190 EIMGISVESEGTIVRVITRLDEICREV 1216
>gi|348519373|ref|XP_003447205.1| PREDICTED: helicase SKI2W isoform 1 [Oreochromis niloticus]
Length = 1244
Score = 307 bits (786), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 197/495 (39%), Positives = 273/495 (55%), Gaps = 53/495 (10%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F +D FQ+ ++ SV V+A TS+GKT++AE A + + R YT+P+KALS
Sbjct: 313 WPFELDVFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMTRTIYTSPIKALS 372
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQKFR+F+ TFGD VGLLTGD ++ E+ LIMTTEILR+MLY ++ D++
Sbjct: 373 NQKFRDFKNTFGD--VGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVIR------DLE 424
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
++ DEVHY++D RG VWEE++I P V II LSATV NA E + WIG+I + +I
Sbjct: 425 WVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRHIYVI 484
Query: 335 TSSRRPVPLTWYF----STKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ +RPVPL Y STKT + LLD G + + Y +
Sbjct: 485 STLKRPVPLEHYLYTGNSTKTQKEMFLLLDATGNFLTKGY--------------YTAVDA 530
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH-LRSRDMLPAIWF 447
++ + KHA SFG S+N+ + RS V TL H L R P + F
Sbjct: 531 KKERTSKHAQ--------SFGTKNTSQNTTASQDRS----VWLTLLHFLSQRQQTPVVAF 578
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEV----ELALKRFRILYPDAVREPAIKGLLK-GV 502
F+R CD + L+ +L E +E+ + +L R R + ++ LLK G+
Sbjct: 579 TFSRTRCDDNARSLDSMDLTTSIEKAEIHSFFQKSLTRLRGGDRQLPQILLMRDLLKRGI 638
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
A HH+G LPI K IE LF RGLVKV+FATET A G+NMPART V S+ K +G L
Sbjct: 639 AVHHSGILPILKEVIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNL 698
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL---LFAGVEPLVSQFTASYGM 619
E QMAGRAGRRG+D G V+++ G E L + L SQF +Y M
Sbjct: 699 LPGEYIQMAGRAGRRGLDATGTVIILCK--AGVHEMADLHAMMLGKPTLLQSQFRLTYTM 756
Query: 620 VLNLLAGAKVMHLSN 634
+LNLL + +H+++
Sbjct: 757 ILNLLR-VEALHVTD 770
>gi|194382646|dbj|BAG64493.1| unnamed protein product [Homo sapiens]
Length = 1053
Score = 307 bits (786), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 202/525 (38%), Positives = 276/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 76 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 130
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 131 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 188
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY S + D++ ++ DEVHY++D+ RG
Sbjct: 189 LLTGDVQLHPEASCLIMTTEILRSMLY------SGSDVIRDLERVIFDEVHYINDVERGV 242
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 243 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 302
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 303 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 341
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 342 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 397
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 398 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 457
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 458 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 517
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 518 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 562
>gi|441508564|ref|ZP_20990488.1| putative helicase [Gordonia aichiensis NBRC 108223]
gi|441447592|dbj|GAC48449.1| putative helicase [Gordonia aichiensis NBRC 108223]
Length = 935
Score = 306 bits (785), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 203/549 (36%), Positives = 285/549 (51%), Gaps = 62/549 (11%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
+ D A+ F +D FQR + A G V+V APT +GKT++ E A +A+ + FY
Sbjct: 7 EFDRFAASLSFHLDDFQRRACHALEDGRGVLVCAPTGAGKTIVGEFAVHLALADGTKCFY 66
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK+ + G NVGLLTGDS+IN +A +++MTTE++RNM+Y ++
Sbjct: 67 TTPIKALSNQKYADLVAVHGKENVGLLTGDSSINSDAPVVVMTTEVVRNMIY------AN 120
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
L + +V+DEVH+L+D RG VWEE+I+ V+++ LSATV+NA+E WI +
Sbjct: 121 SPALRGLSHVVMDEVHFLADRFRGAVWEEVILGLDPSVRVVSLSATVSNAEEFGDWIQTV 180
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G+ +I RPVPL + + + L D P++DGG
Sbjct: 181 RGEVTVIVDEHRPVPLQQHMLVGSRMFDLFD-----------------------PHRDGG 217
Query: 388 SRR------RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT---LWHLRS 438
+ + +H + ++ + G+ + S R + P + + L
Sbjct: 218 GKPQVNPELKRYIRHRMLLADEHDSGRGRDRRSGRGRPRSTRGRGPGALSRPQLVSRLDR 277
Query: 439 RDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRF---------RILYP 487
+LPAI FIF+R GCDAA+ Q L LL E + V+ + R +L
Sbjct: 278 EGLLPAIGFIFSRVGCDAALAQCLRSGLTLLTPEESAAVDEVVDRHLTEISPGDADVLGV 337
Query: 488 DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
D R GL +G AAHHAG LP ++ +EELF GLV++VFATETLA GINMPAR+ V
Sbjct: 338 DEWR----AGLRRGFAAHHAGLLPTFRHTVEELFVLGLVRMVFATETLALGINMPARSVV 393
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
L L K + LT E Q+ GRAGRRGID GH V+V TP E+ L A
Sbjct: 394 LERLVKFNGESHVDLTPGEFTQLTGRAGRRGIDVEGHAVVVWTPELVPEQVAGLAGARTF 453
Query: 608 PLVSQFTASYGMVLNL-----LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F Y M +NL LAG++ L N S QA RS+ + V+ +
Sbjct: 454 PLRSSFAPEYNMAVNLIGRRGLAGSR--ELLNRS--FAQFQADRSVVGQSRKVDDMYRRL 509
Query: 663 VGSNVMLAA 671
+V LAA
Sbjct: 510 RKLDVELAA 518
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 13/169 (7%)
Query: 984 FLRISNVIHETRALDI--NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAA 1041
F RI V+ E ++ N V+ P G+ + I E++L + +R I L P QLAA
Sbjct: 740 FDRIVGVLTELGYVEQERNEVVVTPTGQLLSRIYSESDLLVTECIRAAIWDTLGPPQLAA 799
Query: 1042 VCASLVSEGIKVRLWKNNS--SIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
V A++V E + ++ E T + +++ H+ S +++ +HGV D
Sbjct: 800 VVAAMVFESRRDSHAGADAMPGNVELRTAIAATLDIW--HQVS--DVERRHGVSPTREPD 855
Query: 1100 SQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQI 1143
+ FS V WA+G + E + L GD R R+ +DLL QI
Sbjct: 856 TGFSVAVSLWAAGRSLTESLAAAGERGTLLSPGDFVRWNRQIVDLLEQI 904
>gi|270010333|gb|EFA06781.1| hypothetical protein TcasGA2_TC009717, partial [Tribolium
castaneum]
Length = 1500
Score = 306 bits (785), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 204/587 (34%), Positives = 305/587 (51%), Gaps = 74/587 (12%)
Query: 119 PAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVV 178
P P+ + +W + VK+F + E+A + F +D FQ+ +I + + V
Sbjct: 223 PPPTEFKSTEWAILLDTSKPVKDFKER---IPEMAYEFPFELDTFQKLAILQLEQHNHVF 279
Query: 179 VSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDS 238
V+A TS+GKT++AE A + + R YT+P+KALSNQK+R+F++ F D VGL+TGD
Sbjct: 280 VAAHTSAGKTVVAEYAIALSQKHMTRTIYTSPIKALSNQKYRDFKKEFKD--VGLITGDF 337
Query: 239 AINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII 298
IN+ A LIMTTEILR+MLY + D++ ++ DEVHY++D RG VWE+++
Sbjct: 338 QINQTASCLIMTTEILRSMLYCGSDITR------DLEYVIFDEVHYINDRERGHVWEQVL 391
Query: 299 IYCPKEVQIICLSATVANADELAGWIGQIHG-KTELITSSRRPVPLTWYFSTKTALLPLL 357
I P V ++ LSATV N E A W+G+ H K +IT+ +RPVPL + T T
Sbjct: 392 ILLPAHVCVVLLSATVPNTIEFADWLGRTHQRKVYVITTYKRPVPLLHFLYTGTG----- 446
Query: 358 DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNS 417
NR L LN + +K GG + A + + +++ Q + +
Sbjct: 447 --GASRDNRYLVLNS--------EGWKMGGY----AAAVASLPKVDPKSAYPQAKSQYYN 492
Query: 418 INAIRRSQVPQVIDTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEM 472
P+ LW HL +++LP + F F+R CD + L +L + E
Sbjct: 493 F-------TPKQEKVLWNGLVDHLNRKNLLPIVAFTFSRAKCDQNAENLMSLDLTTQKEK 545
Query: 473 SEVEL-------ALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGL 525
+++ + +LK P +R I L KG+ HH+G LPI K +E LFQ+GL
Sbjct: 546 AQIHMFFEKCVRSLKEPDRNIPQILRMRNI--LHKGIGVHHSGVLPIIKEIVEMLFQKGL 603
Query: 526 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 585
+K++FATET A G+NMPART V S++K R L E QMAGRAGRRG+D+ G V
Sbjct: 604 IKLLFATETFAMGVNMPARTVVFDSITKHDGQERRNLKPAEYIQMAGRAGRRGLDSEGTV 663
Query: 586 -VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQA 644
+L + EE ++ L SQF +YGMVL+LL +V LS E
Sbjct: 664 IILCKNKIPKVEELQAMMLGTPNVLQSQFRLTYGMVLSLL---RVESLSVEG-------- 712
Query: 645 GRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKET-DVLTSEIS 690
++ +SF M+ ++EL +++KE D+ T E+S
Sbjct: 713 ---------MMSRSFREADHQKKMVDKQNELLEVEKEIRDLCTQELS 750
>gi|194386298|dbj|BAG59713.1| unnamed protein product [Homo sapiens]
Length = 1088
Score = 306 bits (784), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 202/525 (38%), Positives = 276/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 111 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 165
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 166 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 223
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY S + D++ ++ DEVHY++D+ RG
Sbjct: 224 LLTGDVQLHPEASCLIMTTEILRSMLY------SGSDVIRDLEWVIFDEVHYINDVERGV 277
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 278 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 337
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 338 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 376
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 377 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 432
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 433 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 492
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 493 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 552
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 553 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 597
>gi|324500801|gb|ADY40367.1| Helicase SKI2W [Ascaris suum]
Length = 1321
Score = 306 bits (784), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 186/499 (37%), Positives = 274/499 (54%), Gaps = 57/499 (11%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
+A Y F +D FQ+ ++ RG SV V+A TS+GKT++AE A + ++ R+ YT+P+
Sbjct: 340 MARKYPFELDSFQQQAVVCMERGESVFVAAHTSAGKTVVAEYAVALSNIHKTRVIYTSPI 399
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQKFR+F+ F D VGL+TGD ++ +A L+MTTE+LR+MLY ++
Sbjct: 400 KALSNQKFRDFKLVFDD--VGLITGDIQLHTDAFALVMTTEVLRSMLYNGSEVIR----- 452
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-K 330
+++ ++ DEVHY++D RG VWEE++I P V+I+ LSATV N E A W+G+I K
Sbjct: 453 -ELEWVIFDEVHYINDAERGHVWEEVLIMLPGHVKIVMLSATVPNCIEFADWVGRIKNRK 511
Query: 331 TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 384
++ +SRRPVPL Y T+ L ++D G+ + R SL
Sbjct: 512 INVVMTSRRPVPLEHYLYTGQDGKTRKDLFKIVDSNGEFIQRGYSL------------VA 559
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
D S+ R A + N SK N I+ + HLR +++LP
Sbjct: 560 DAKSKLRKISSGAKVYRPN----------SKTDKNI--------YINLIEHLRVQNLLPM 601
Query: 445 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF--RILYPDAVREPAIKGLL--- 499
+ F+F+RR CD L+ +L E SE+ + R+ D + P + +
Sbjct: 602 VVFVFSRRRCDENAALLQSVDLTTAKEKSEIHHFFSKCIDRLRGSDK-KLPQVLQMAELC 660
Query: 500 -KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G A HH+G LPI K +E LFQ+G VK++FATET A G+NMPART V S+ K
Sbjct: 661 KRGFAVHHSGILPILKEVVELLFQKGYVKILFATETFAMGVNMPARTVVFDSMQKHDGRE 720
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE--ECCKLLFAGVEPLVSQFTAS 616
L+ +E QMAGRAGRRG+D+ G V+++ + E E +++ L S+F +
Sbjct: 721 MRTLSPSEYIQMAGRAGRRGLDSTGTVIVLCKGPDAPEPTELTRMMMGKPMKLESRFRVT 780
Query: 617 YGMVLNLLAGAKVMHLSNE 635
Y M+LNLL +V HL E
Sbjct: 781 YSMLLNLL---RVEHLRIE 796
>gi|68479463|ref|XP_716263.1| hypothetical protein CaO19.6425 [Candida albicans SC5314]
gi|68479634|ref|XP_716180.1| hypothetical protein CaO19.13783 [Candida albicans SC5314]
gi|46437839|gb|EAK97179.1| hypothetical protein CaO19.13783 [Candida albicans SC5314]
gi|46437927|gb|EAK97266.1| hypothetical protein CaO19.6425 [Candida albicans SC5314]
Length = 1245
Score = 306 bits (784), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 197/543 (36%), Positives = 286/543 (52%), Gaps = 83/543 (15%)
Query: 129 WQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKT 188
W V L +++++F E+ V +A + F +D FQ+ ++ +G SV V+A TS+GKT
Sbjct: 262 WAHVVDLDHKIEDF-QEL--VPNMARTWPFELDTFQKEAVFHLEQGDSVFVAAHTSAGKT 318
Query: 189 LIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILI 248
++AE A N + YT+P+KALSNQKFR+F+ETF D +VGL+TGD IN EA LI
Sbjct: 319 VVAEYAIAMAHRNMTKCIYTSPIKALSNQKFRDFKETFKDIDVGLITGDVQINPEANCLI 378
Query: 249 MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQII 308
MTTEILR+MLY+ ++ DV+ ++ DEVHY++DI RG VWEE+II P V+ I
Sbjct: 379 MTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPDHVKYI 432
Query: 309 CLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRK 367
LSATV N E A W+G+ K +I++ +RPVPL + S K L ++D NR+
Sbjct: 433 LLSATVPNTFEFANWVGRTKQKDIYVISTPKRPVPLEIFVSAKNQLFKVVD-----ANRR 487
Query: 368 LSLNYLQLSTSEVKPYKD--GGSRRRNSRKHADM-------------------------- 399
N E + +KD G ++N M
Sbjct: 488 FQEN-------EFRKHKDLLEGGGKKNELPSTTMGSGSRGGPGGTARGGNRGGRGGRGGQ 540
Query: 400 ----NSNNIVTS----FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
N+N S FG+ KN+ ID + +++S ++LPA+ F+F++
Sbjct: 541 GRGGNANRGNFSGPKRFGRDGPKKNTW-----------IDLVNYMKSNNLLPAVVFVFSK 589
Query: 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHH 506
+ C+ L + + E SE+ + + R RE P I + L +G+A HH
Sbjct: 590 KRCEEYADSLRSVDFNNAREKSEIHMFIDRAVGRLKKEDRELPQILKIREMLGRGIAVHH 649
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
G LPI K IE LF + LVKV+FATET A G+N+P RT + SS+ K L E
Sbjct: 650 GGLLPIVKECIEILFAKSLVKVLFATETFAMGLNLPTRTVIFSSMRKHDGRSFRNLLPGE 709
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQ-----TPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
QM+GRAGRRG+D G V+++ +P + E ++ L SQF +Y M+L
Sbjct: 710 FTQMSGRAGRRGLDKTGTVIVMAYDDPLSPTDFKE----VVLGTPTKLSSQFRLTYSMIL 765
Query: 622 NLL 624
NLL
Sbjct: 766 NLL 768
>gi|409051951|gb|EKM61427.1| hypothetical protein PHACADRAFT_156677 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1253
Score = 306 bits (784), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 190/527 (36%), Positives = 279/527 (52%), Gaps = 39/527 (7%)
Query: 125 EEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTS 184
E+ W V + +K F +E+ V ++A Y F +D FQ+ ++ G SV V+A TS
Sbjct: 256 EKRDWAHVVDINKPMKNF-HEL--VPDMAHKYPFELDTFQKEAVYHLEMGDSVFVAAHTS 312
Query: 185 SGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREA 244
+GKT++AE A + R YT+P+KALSNQK+R+F++TF NVG+LTGD IN EA
Sbjct: 313 AGKTVVAEYAIALAAKHMTRAIYTSPIKALSNQKYRDFKQTFDAANVGILTGDVQINPEA 372
Query: 245 QILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKE 304
LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P
Sbjct: 373 NCLIMTTEILRSMLYKGADLIR------DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDH 426
Query: 305 VQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEK--- 360
V II LSATV N E A W+G+ K +I++++RPVPL + ++D +
Sbjct: 427 VNIILLSATVPNTKEFADWVGRTKKKDIYVISTAKRPVPLEHFLYAGRDFHKIVDAERHF 486
Query: 361 --------GKHMNRKLSLNYLQLSTSEVKPYKDGGSR----RRNSR--KHADMNSNNIVT 406
G+ + RK + + + P + G+R +R R
Sbjct: 487 VGEGYKAAGEALRRKQD---KEREAAGLPPVQRLGARAAAPQRGGRGAPTGRGGQRGGTP 543
Query: 407 SFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED 463
+ G ++ + R P + + +L+ + +LP + F F+++ C+ L +
Sbjct: 544 ARGATPAARGPTGSGRTFHQPDKNLYVHLIGNLKKKSLLPVVVFTFSKKRCEENAGTLTN 603
Query: 464 CNLLDECEMSEVELALKRFRILYPDAVRE-PAIKG----LLKGVAAHHAGCLPIWKSFIE 518
+L E SEV + +++ DA R P I+ L +G+ HH G LPI K +E
Sbjct: 604 LDLSTSVEKSEVHVMIEKALSRLKDADRRLPQIRRMRDLLSRGIGVHHGGLLPIVKEAVE 663
Query: 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578
LF RGLVKV+FATET A G+NMPA++ V S K ++ E QMAGRAGRRG
Sbjct: 664 MLFARGLVKVLFATETFAMGVNMPAKSVVFSHTRKHDGKSFREVLPGEYTQMAGRAGRRG 723
Query: 579 IDNRGHVVLVQTPYEGAEECCKLLFAGVE-PLVSQFTASYGMVLNLL 624
+D G VVLV + + + G L SQF +Y M+LNLL
Sbjct: 724 LDATGTVVLVANDELPEQTTLQTMILGTPLKLQSQFRLTYNMILNLL 770
>gi|119623960|gb|EAX03555.1| superkiller viralicidic activity 2-like (S. cerevisiae), isoform
CRA_b [Homo sapiens]
gi|119623961|gb|EAX03556.1| superkiller viralicidic activity 2-like (S. cerevisiae), isoform
CRA_b [Homo sapiens]
Length = 990
Score = 306 bits (784), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 276/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 269 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 323
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 324 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 381
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D+ RG
Sbjct: 382 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDVERGV 435
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 436 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 495
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 496 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 534
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 535 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 590
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 591 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 650
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 651 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 710
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 711 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 755
>gi|422450854|ref|ZP_16527567.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
gi|315109469|gb|EFT81445.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
Length = 917
Score = 306 bits (783), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 190/524 (36%), Positives = 273/524 (52%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVTRHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPVPL + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAI 445
R R + + FG + R Q I + L ++LPAI
Sbjct: 235 RRPRGRSGKGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAI 294
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGL 498
F+F+R GCDAAV L + +L+ + +L A +R L + R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|50842859|ref|YP_056086.1| superfamily II RNA helicase [Propionibacterium acnes KPA171202]
gi|335053752|ref|ZP_08546583.1| DSHCT domain protein [Propionibacterium sp. 434-HC2]
gi|387503755|ref|YP_005944984.1| superfamily II RNA helicase [Propionibacterium acnes 6609]
gi|422456974|ref|ZP_16533636.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
gi|50840461|gb|AAT83128.1| superfamily II RNA helicase [Propionibacterium acnes KPA171202]
gi|315105965|gb|EFT77941.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
gi|333766421|gb|EGL43727.1| DSHCT domain protein [Propionibacterium sp. 434-HC2]
gi|335277800|gb|AEH29705.1| superfamily II RNA helicase [Propionibacterium acnes 6609]
Length = 917
Score = 306 bits (783), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 190/524 (36%), Positives = 273/524 (52%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVTRHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPVPL + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAI 445
R R + + FG + R Q I + L ++LPAI
Sbjct: 235 RRPRGRSGKGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAI 294
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGL 498
F+F+R GCDAAV L + +L+ + +L A +R L + R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 47.0 bits (110), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLLGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|4379045|emb|CAA88733.1| helicase [Homo sapiens]
Length = 1246
Score = 306 bits (783), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 276/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 269 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 323
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 324 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 381
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D+ RG
Sbjct: 382 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDVERGV 435
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 436 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 495
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 496 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 534
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 535 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 590
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 591 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLQMSELLNRGLGVHHSGILPILKEIVEML 650
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 651 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 710
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 711 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 755
>gi|397653961|ref|YP_006494644.1| ATP-dependent DNA helicase [Corynebacterium ulcerans 0102]
gi|393402917|dbj|BAM27409.1| ATP-dependent DNA helicase [Corynebacterium ulcerans 0102]
Length = 918
Score = 306 bits (783), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 210/594 (35%), Positives = 308/594 (51%), Gaps = 77/594 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E S F +D FQ +A V+V APT +GKT++ E A ++ + FYTTP
Sbjct: 13 EFISRQKFPLDDFQIQGCQAIEDDRGVLVCAPTGAGKTIVGEFAVSLALSRGTKCFYTTP 72
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQKF + E G+ +GLLTGD +IN +A +L+MTTE+LRNM+Y +
Sbjct: 73 IKALSNQKFHDLVEVHGEEAIGLLTGDVSINHDADVLVMTTEVLRNMIY------ARSEA 126
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DE+H+LSD SRG VWEE I+ + V ++ LSATV+N++E W+ + G
Sbjct: 127 LTRLTHVVMDEIHFLSDKSRGAVWEEAILGLDESVSVVGLSATVSNSEEFGRWLETVRGD 186
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEV-----KPYK 384
TE+I S RPVPL + + PL + + G +N +L + +L E +K
Sbjct: 187 TEVIVSEHRPVPLNQWMMVGRRIHPLFEPDSGGEVNARLEDHIDRLEGKEAIDRGRAQFK 246
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
GG R R+S S + + R P+V+D L +S+DMLPA
Sbjct: 247 AGGFRARSSGDSHSSRS------------GRPRQDRYRPLGRPEVLDVL---QSQDMLPA 291
Query: 445 IWFIFNRRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPD--AVREPAIK----- 496
I FIF+R GC+ A+ Q + +L + + +E E+A RI+ + E +K
Sbjct: 292 ITFIFSRAGCEGALYQCMRSSIVLTDQQEAE-EIA----RIVDAGVAGIPEEDLKVLDFR 346
Query: 497 ----GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL L
Sbjct: 347 KWRSALMRGFAAHHAGMLPAFRHIVEELFTKGLVRAVFATETLALGINMPARTVVLEKLV 406
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
K + LT + Q+ GRAGRRGID G+ V+ P L PL+S
Sbjct: 407 KYNGEAHVDLTPGQYTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLIST 466
Query: 613 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV--GSNVMLA 670
F+ Y M +NLL K + + A +L+E+SF + GS V +
Sbjct: 467 FSPGYNMSVNLL---KTIGFT----------------PAHRLLEKSFAQFQADGSVVDVV 507
Query: 671 AKDEL--CKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR 722
E +++K L++ I ++ I++ + E +L+ EL E+R
Sbjct: 508 RNIERSEARVKKLETQLSAHIPEEDIEK----------FVEYIDLRRELTDEER 551
Score = 47.0 bits (110), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 15/196 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV--IFPLGETAAAI 1014
EK+ R + + RL +E + K F RI ++ E ++ + + GE A I
Sbjct: 700 EKLARAQKETSRLRTTVETATDTLGKTFDRILGLLGELDYVEFIDGIPQVTEEGENLAKI 759
Query: 1015 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVIN 1074
E++L +A L+ I L PA+LA V + E K + ++ + + N +
Sbjct: 760 HNESDLLVAQCLKRGIWDGLDPAELAGVVSMCTFENRKETRGEPEAATEPMAVAMNNTLR 819
Query: 1075 VLDEHRSSFLELQEKHGVEIPCC--LDSQFSGMVEAWASGLTWREMMMDCA-----LDDG 1127
+ DE L + E+ ++P ++ FS + W +G + A L G
Sbjct: 820 LWDE-----LSVNERR-YQLPVTKYPEAGFSLAIHQWTAGAPLGYCLAAAAESGAELTAG 873
Query: 1128 DLARLLRRTIDLLAQI 1143
D R R+ IDLL QI
Sbjct: 874 DFVRQCRQVIDLLEQI 889
>gi|119623959|gb|EAX03554.1| superkiller viralicidic activity 2-like (S. cerevisiae), isoform
CRA_a [Homo sapiens]
Length = 1183
Score = 306 bits (783), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 276/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 269 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 323
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 324 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 381
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D+ RG
Sbjct: 382 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDVERGV 435
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 436 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 495
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 496 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 534
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 535 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 590
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 591 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 650
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 651 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 710
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 711 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 755
>gi|289425376|ref|ZP_06427153.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
gi|365963071|ref|YP_004944637.1| superfamily II RNA helicase [Propionibacterium acnes TypeIA2
P.acn31]
gi|365965312|ref|YP_004946877.1| superfamily II RNA helicase [Propionibacterium acnes TypeIA2
P.acn17]
gi|365974245|ref|YP_004955804.1| superfamily II RNA helicase [Propionibacterium acnes TypeIA2
P.acn33]
gi|422427690|ref|ZP_16504601.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
gi|422433569|ref|ZP_16510437.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|422436141|ref|ZP_16512998.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
gi|422438458|ref|ZP_16515302.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|422444448|ref|ZP_16521242.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|422445150|ref|ZP_16521904.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|422453729|ref|ZP_16530416.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|422501714|ref|ZP_16577968.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|422510256|ref|ZP_16586402.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|422516643|ref|ZP_16592752.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|422524000|ref|ZP_16600009.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|422531964|ref|ZP_16607910.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|422543279|ref|ZP_16619129.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|422548203|ref|ZP_16624019.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|422550092|ref|ZP_16625892.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|422558612|ref|ZP_16634352.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
gi|422562665|ref|ZP_16638342.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
gi|422571695|ref|ZP_16647276.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|289154354|gb|EFD03042.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
gi|313792458|gb|EFS40551.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|313801496|gb|EFS42745.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|313816413|gb|EFS54127.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|313827289|gb|EFS65003.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|314917850|gb|EFS81681.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|314919739|gb|EFS83570.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|314930018|gb|EFS93849.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|314956405|gb|EFT00717.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|314957274|gb|EFT01377.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|314967723|gb|EFT11822.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|315078215|gb|EFT50258.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|315098195|gb|EFT70171.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|315101650|gb|EFT73626.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
gi|327452354|gb|EGE99008.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|327452770|gb|EGE99424.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
gi|327453522|gb|EGF00177.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|328752637|gb|EGF66253.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
gi|328753810|gb|EGF67426.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
gi|365739752|gb|AEW83954.1| superfamily II RNA helicase [Propionibacterium acnes TypeIA2
P.acn31]
gi|365741993|gb|AEW81687.1| superfamily II RNA helicase [Propionibacterium acnes TypeIA2
P.acn17]
gi|365744244|gb|AEW79441.1| superfamily II RNA helicase [Propionibacterium acnes TypeIA2
P.acn33]
Length = 917
Score = 306 bits (783), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 190/524 (36%), Positives = 273/524 (52%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVTRHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPVPL + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAI 445
R R + + FG + R Q I + L ++LPAI
Sbjct: 235 RRPRGRSGKGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAI 294
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGL 498
F+F+R GCDAAV L + +L+ + +L A +R L + R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 47.8 bits (112), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|422545031|ref|ZP_16620861.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
gi|314963152|gb|EFT07252.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
Length = 917
Score = 306 bits (783), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 190/524 (36%), Positives = 273/524 (52%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVTRHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPVPL + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAI 445
R R + + FG + R Q I + L ++LPAI
Sbjct: 235 RRPRGRSGKGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAI 294
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGL 498
F+F+R GCDAAV L + +L+ + +L A +R L + R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 47.8 bits (112), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|47208140|emb|CAF92300.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1120
Score = 306 bits (783), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 193/485 (39%), Positives = 267/485 (55%), Gaps = 52/485 (10%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F +D FQ+ +I SV V+A TS+GKT++AE A + + R YT+P+KALS
Sbjct: 194 WPFELDVFQKQAILRLEDHDSVFVAAHTSAGKTVVAEYAIALSQKHMTRTIYTSPIKALS 253
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQKFR+F+ TFGD VGLLTGD I+ E+ LIMTTEILR+MLY ++ D++
Sbjct: 254 NQKFRDFKNTFGD--VGLLTGDVQISPESSCLIMTTEILRSMLYNGSEVIR------DLE 305
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
++ DEVHY++D RG VWEE++I P V II LSATV NA E + WIG+I + +I
Sbjct: 306 WVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRHIYVI 365
Query: 335 TSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ +RPVPL Y T+ + L+D G +N+ Y +
Sbjct: 366 STMKRPVPLEHYLYTGNSSKTQKEMFLLVDAAGNFLNKAY--------------YAAVDA 411
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH-LRSRDMLPAIWF 447
++ S KH+ SFG S+N+ + R+ V TL H L +R P + F
Sbjct: 412 KKERSSKHSQ--------SFGTKNTSQNTTASQDRA----VWLTLLHYLSARQQTPVVAF 459
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEV----ELALKRFRILYPDAVREPAIKGLLK-GV 502
F+R CD + L+ +L E +E+ + +L R R + ++ LLK G+
Sbjct: 460 TFSRTRCDENARSLDSMDLTTSIEKAEIHSFFQKSLSRLRGGDRQLPQILLMRDLLKRGI 519
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
A HH+G LPI K E LF RGLVKV+FATET A G+NMPART V S+ K +G L
Sbjct: 520 AVHHSGILPILKEVTEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNL 579
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL---LFAGVEPLVSQFTASYGM 619
E QMAGRAGRRG+D G V+++ G +E L + L SQF +Y M
Sbjct: 580 LPGEYIQMAGRAGRRGLDATGTVIILCK--AGVQEMADLHVMMMGKPTVLHSQFRLTYTM 637
Query: 620 VLNLL 624
+LNLL
Sbjct: 638 ILNLL 642
>gi|213692054|ref|YP_002322640.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|384199214|ref|YP_005584957.1| putative helicase [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|213523515|gb|ACJ52262.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum
subsp. infantis ATCC 15697 = JCM 1222]
gi|320458166|dbj|BAJ68787.1| putative helicase [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
Length = 863
Score = 305 bits (782), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 201/534 (37%), Positives = 288/534 (53%), Gaps = 76/534 (14%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + +A GS+V+V+APT +GKT++A+ A + FYTTP+KALSNQ
Sbjct: 45 FELDGFQTEANDALEAGSNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKALSNQ 104
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + + +G + VGLLTGD++IN EA I++MTTE+LRNMLY+ +++ + +
Sbjct: 105 KYHDLVDVYGPDKVGLLTGDTSINSEADIVVMTTEVLRNMLYERSTTLNA------LRYV 158
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
+LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 159 ILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVISE 218
Query: 338 RRPVPLTWYF------STKTALLPLLDEKGK-HMNRKLSLNYL-QLSTSEVKPYKDGGSR 389
RPVPL + T+ +L L G KL+ + +L + K + G
Sbjct: 219 HRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQLDRKAARRRGEE 278
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ--VPQ---VIDTLWHLRSRDMLPA 444
R + RK SFG+ + K N +++ P+ V+D L L MLP
Sbjct: 279 RPDKRK-----------SFGRGRGGKGVKNRAPKAERHTPRRWAVVDELNFL---GMLPG 324
Query: 445 IWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVRE 492
I+FIF+R GCD AV+ + L DE EM E +L + + L R
Sbjct: 325 IYFIFSRNGCDQAVEQCINAGLKLTTDEEVTRIRRIVDEMVEGQLTQEDLKALQFSKFR- 383
Query: 493 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L
Sbjct: 384 ---FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKLE 440
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEP 608
K + + LT E Q+ GRAGRRGID GH ++V P A K ++ P
Sbjct: 441 KFDGTSHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY----P 496
Query: 609 LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
L S F ++ M +NLL N SD E AR ++QSF +
Sbjct: 497 LHSSFRPTFNMAVNLL---------NSSD----------YETARVTLDQSFAQW 531
>gi|448527708|ref|XP_003869560.1| Ski2 protein [Candida orthopsilosis Co 90-125]
gi|380353913|emb|CCG23425.1| Ski2 protein [Candida orthopsilosis]
Length = 1243
Score = 305 bits (782), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 196/538 (36%), Positives = 288/538 (53%), Gaps = 48/538 (8%)
Query: 116 DSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGS 175
D P R+ W V L +++++F NE+ V +A + F +D FQ+ ++ +G
Sbjct: 249 DEKKPPEKRD---WAHVVDLDHKIEDF-NEL--VPNMARTWPFELDTFQKEAVFHLEQGD 302
Query: 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLT 235
SV V+A TS+GKT++AE A N + YT+P+KALSNQKFR+F+ETF D +VGL+T
Sbjct: 303 SVFVAAHTSAGKTVVAEYAIAMAKRNMTKCIYTSPIKALSNQKFRDFKETFKDIDVGLIT 362
Query: 236 GDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWE 295
GD IN EA LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++DI RG VWE
Sbjct: 363 GDVQINPEANCLIMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDIDRGVVWE 416
Query: 296 EIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALL 354
E+II P V+ I LSATV N E A W+G+ K +I++ +RPVPL + STK L
Sbjct: 417 EVIIMLPDHVKYILLSATVPNTFEFANWVGRTKQKDIYVISTPKRPVPLEIFISTKNKLF 476
Query: 355 PLLDEKGKHMNRKLSLNYLQL---STSEVKPYKDGGSRRRNSRKHADMNSNNIVT----- 406
++D + + + + L ++++ P GS R N VT
Sbjct: 477 KVVDSNRRFLESEFKAHKSLLEAGNSNKQLPSTTMGSGSRGGPGGTARGGNRGVTRGRGS 536
Query: 407 ---------SFGQHQLSKN-SINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
+ G K + ++ P+++ +++S ++LPA+ F+F+++ C+
Sbjct: 537 GRGGRGGSSNHGNFSGPKRFGTDGPNKNTWPELV---HYMKSNNLLPAVIFVFSKKKCET 593
Query: 457 AVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLP 511
L + E SE+ + + R RE P I + L +G+A HH G LP
Sbjct: 594 YADSLHGVDFCTAKEKSEIHMFIDRAVGRLKKEDRELPQIIKIREMLSRGIAVHHGGLLP 653
Query: 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMA 571
I K IE LF + LVKV+FATET A G+N+P RT V SS K L E QM+
Sbjct: 654 IVKECIEILFAKTLVKVLFATETFAMGLNLPTRTVVFSSTRKHDGRAFRNLLPGEFTQMS 713
Query: 572 GRAGRRGIDNRGHVVLVQ-----TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
GRAGRRG+D G V+++ +P + E + L SQF +Y M+LNLL
Sbjct: 714 GRAGRRGLDATGTVIVMAYNEALSPTDFKE----VALGTPTKLQSQFRLTYNMILNLL 767
Score = 40.8 bits (94), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 94/221 (42%), Gaps = 33/221 (14%)
Query: 945 YKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNV-----------IHE 993
+ KI D FT K+ A +++ R+ Q+E G + + N+ + E
Sbjct: 999 FSKINDLKAFTCPNFKQHYAEYRKM--RLLQMELEGLERLISDENLDLLPDYEQRLEVLE 1056
Query: 994 TRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG--- 1050
T + G A I EL L ++ + L D +P+++ A+ + V EG
Sbjct: 1057 TLGFIDEKHNVVLKGRVACEINSGWELILTELVLDNFLGDFEPSEIVALLSCFVYEGRTQ 1116
Query: 1051 ------IKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFS- 1103
I RL K + I E + ++ V E R S L +E+ VE +F+
Sbjct: 1117 EEEPPLITPRLEKGKAKILEIAD---KLLRVFIEKRVS-LTSEEEDFVE-----SKRFAL 1167
Query: 1104 -GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 1143
+V WA+GL++ E+M +G + R++ R ++ ++
Sbjct: 1168 VNVVYEWANGLSFNEIMEISVESEGTIVRVITRLDEICREV 1208
>gi|407935789|ref|YP_006851431.1| helicase [Propionibacterium acnes C1]
gi|407904370|gb|AFU41200.1| putative helicase [Propionibacterium acnes C1]
Length = 917
Score = 305 bits (782), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 190/524 (36%), Positives = 273/524 (52%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVARHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPVPL + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAI 445
R R + + FG + R Q I + L ++LPAI
Sbjct: 235 RRPRGRSGKGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAI 294
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGL 498
F+F+R GCDAAV L + +L+ + +L A +R L + R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|7671650|emb|CAB89307.1| dJ34F7.7 (superkiller viralicidic activity 2 (S. cerevisiae
homolog)-like (SKI2W)) [Homo sapiens]
Length = 1245
Score = 305 bits (782), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 276/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 268 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 322
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 323 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 380
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D+ RG
Sbjct: 381 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDVERGV 434
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 435 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 494
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 495 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 533
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 534 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 589
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 590 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 649
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 650 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 709
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 710 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 754
>gi|1403336|emb|CAA67024.1| SKI2W protein [Homo sapiens]
gi|119623962|gb|EAX03557.1| superkiller viralicidic activity 2-like (S. cerevisiae), isoform
CRA_c [Homo sapiens]
Length = 1246
Score = 305 bits (782), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 276/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 269 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 323
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 324 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 381
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D+ RG
Sbjct: 382 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDVERGV 435
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 436 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 495
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 496 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 534
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 535 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 590
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 591 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 650
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 651 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 710
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 711 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 755
>gi|295130913|ref|YP_003581576.1| putative helicase [Propionibacterium acnes SK137]
gi|417929614|ref|ZP_12572998.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182]
gi|422387607|ref|ZP_16467719.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
HL096PA2]
gi|422392386|ref|ZP_16472456.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
HL099PA1]
gi|422426215|ref|ZP_16503139.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|422475485|ref|ZP_16551932.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
gi|422478627|ref|ZP_16555046.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|422518975|ref|ZP_16595043.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
gi|422522233|ref|ZP_16598263.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|422527618|ref|ZP_16603608.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|422530163|ref|ZP_16606127.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|422560613|ref|ZP_16636300.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
gi|291375376|gb|ADD99230.1| putative helicase [Propionibacterium acnes SK137]
gi|313771905|gb|EFS37871.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
gi|313809630|gb|EFS47366.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|313829950|gb|EFS67664.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|313833045|gb|EFS70759.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
gi|314972883|gb|EFT16980.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|314975694|gb|EFT19789.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|314984122|gb|EFT28214.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
gi|327330048|gb|EGE71801.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
HL096PA2]
gi|327442720|gb|EGE89374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|328761431|gb|EGF74957.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
HL099PA1]
gi|340773737|gb|EGR96229.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182]
Length = 917
Score = 305 bits (782), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 190/524 (36%), Positives = 273/524 (52%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVARHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPVPL + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAI 445
R R + + FG + R Q I + L ++LPAI
Sbjct: 235 RRPRGRSGKGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAI 294
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGL 498
F+F+R GCDAAV L + +L+ + +L A +R L + R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTSGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|67782311|ref|NP_008860.4| helicase SKI2W [Homo sapiens]
gi|313104288|sp|Q15477.3|SKIV2_HUMAN RecName: Full=Helicase SKI2W; Short=Ski2; AltName:
Full=Helicase-like protein; Short=HLP
Length = 1246
Score = 305 bits (782), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 276/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 269 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 323
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 324 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 381
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D+ RG
Sbjct: 382 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDVERGV 435
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 436 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 495
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 496 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 534
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 535 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 590
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 591 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 650
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 651 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 710
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 711 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 755
>gi|422539058|ref|ZP_16614931.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
gi|313764063|gb|EFS35427.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
Length = 917
Score = 305 bits (782), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 190/524 (36%), Positives = 273/524 (52%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVTRHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPVPL + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAI 445
R R + + FG + R Q I + L ++LPAI
Sbjct: 235 RRPRGRSGKGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAI 294
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGL 498
F+F+R GCDAAV L + +L+ + +L A +R L + R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 47.8 bits (112), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|354607342|ref|ZP_09025312.1| hypothetical protein HMPREF1003_01879 [Propionibacterium sp.
5_U_42AFAA]
gi|386024336|ref|YP_005942641.1| putative helicase HelY [Propionibacterium acnes 266]
gi|422385793|ref|ZP_16465918.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
HL096PA3]
gi|422449464|ref|ZP_16526189.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
gi|422481002|ref|ZP_16557405.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
gi|422483509|ref|ZP_16559898.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
gi|422488259|ref|ZP_16564588.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
gi|422490362|ref|ZP_16566677.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
gi|422498131|ref|ZP_16574403.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
gi|422505892|ref|ZP_16582115.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
gi|422507318|ref|ZP_16583522.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
gi|422513760|ref|ZP_16589883.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
gi|422551862|ref|ZP_16627653.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
gi|422555896|ref|ZP_16631658.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
gi|422568274|ref|ZP_16643892.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
gi|313807138|gb|EFS45633.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
gi|313819334|gb|EFS57048.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
gi|313819983|gb|EFS57697.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
gi|313823224|gb|EFS60938.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
gi|313824987|gb|EFS62701.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
gi|314924822|gb|EFS88653.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
gi|314960620|gb|EFT04722.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
gi|314986240|gb|EFT30332.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
gi|314989545|gb|EFT33636.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
gi|315086014|gb|EFT57990.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
gi|327327909|gb|EGE69683.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
HL096PA3]
gi|327443949|gb|EGE90603.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
gi|328755038|gb|EGF68654.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
gi|332675794|gb|AEE72610.1| putative helicase HelY [Propionibacterium acnes 266]
gi|353557457|gb|EHC26826.1| hypothetical protein HMPREF1003_01879 [Propionibacterium sp.
5_U_42AFAA]
Length = 917
Score = 305 bits (782), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 190/524 (36%), Positives = 273/524 (52%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVARHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPVPL + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAI 445
R R + + FG + R Q I + L ++LPAI
Sbjct: 235 RRPRGRSGKGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAI 294
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGL 498
F+F+R GCDAAV L + +L+ + +L A +R L + R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 47.8 bits (112), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|157928370|gb|ABW03481.1| superkiller viralicidic activity 2-like (S. cerevisiae) [synthetic
construct]
Length = 1246
Score = 305 bits (782), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 276/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 269 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 323
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 324 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 381
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D+ RG
Sbjct: 382 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDVERGV 435
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 436 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 495
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 496 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 534
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 535 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 590
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 591 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 650
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 651 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 710
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 711 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 755
>gi|16041755|gb|AAH15758.1| Superkiller viralicidic activity 2-like (S. cerevisiae) [Homo
sapiens]
gi|123982544|gb|ABM83013.1| superkiller viralicidic activity 2-like (S. cerevisiae) [synthetic
construct]
Length = 1246
Score = 305 bits (782), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 276/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 269 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 323
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 324 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 381
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D+ RG
Sbjct: 382 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDVERGV 435
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 436 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 495
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 496 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 534
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 535 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 590
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 591 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 650
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 651 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 710
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 711 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 755
>gi|422501935|ref|ZP_16578180.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
gi|315084841|gb|EFT56817.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
Length = 917
Score = 305 bits (782), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 190/524 (36%), Positives = 273/524 (52%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVARHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPVPL + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAI 445
R R + + FG + R Q I + L ++LPAI
Sbjct: 235 RRPRGRSGKGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAI 294
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGL 498
F+F+R GCDAAV L + +L+ + +L A +R L + R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 47.0 bits (110), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSRIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|333990754|ref|YP_004523368.1| ATP-dependent DNA helicase HelY [Mycobacterium sp. JDM601]
gi|333486722|gb|AEF36114.1| ATP-dependent DNA helicase HelY [Mycobacterium sp. JDM601]
Length = 928
Score = 305 bits (782), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 195/531 (36%), Positives = 265/531 (49%), Gaps = 81/531 (15%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQR + A G V+V APT +GKT++ E A +A + FYTTP+KALSNQ
Sbjct: 22 FGLDDFQRRACLALADGRGVLVCAPTGAGKTVVGEFAVHLALAAGGKCFYTTPIKALSNQ 81
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K + +G++ VGLLTGD ++N A +++MTTE+LRNMLY + L + +
Sbjct: 82 KHTDLVARYGEHRVGLLTGDLSVNANAPVVVMTTEVLRNMLY------ADSPALQGLSHV 135
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVH+L+D RG VWEE+I++ EV+++ LSATV+NA+E GWI + G T ++
Sbjct: 136 VMDEVHFLADRMRGAVWEEVILHLADEVRLVSLSATVSNAEEFGGWIQTVRGDTAVVVDE 195
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG-GSRRRNS--- 393
RPVPL + L L E +P DG G+ R
Sbjct: 196 HRPVPLWQHMMVGKRLFDLF---------------------ESRPDTDGQGAAGRPRVDP 234
Query: 394 ---RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
R A + +T + + + P D + L S +LPAI F+F+
Sbjct: 235 QLLRHIAHRREADRITDWSPRRHGGRGGPGRPSYRPPMRPDVIAVLDSAGLLPAITFVFS 294
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA---------------- 494
R GCDAAV+ +C S + L + R + +
Sbjct: 295 RVGCDAAVK---------QCLRSPLRLTTESERARIAEVIDHRCGDLADDDLDVLGYYEW 345
Query: 495 IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554
+GLL+G+A HHAG LP+++ +EELF GLVK VFATETLA GINMPART VL L K
Sbjct: 346 REGLLRGLAGHHAGLLPVFRHTVEELFAAGLVKAVFATETLALGINMPARTVVLERLVKF 405
Query: 555 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA---EECCKLLFAGVEPLVS 611
LT E Q+ GRAGRRGID GH V++ P E E+ L PL S
Sbjct: 406 NGEQHAALTPGEYTQLTGRAGRRGIDVEGHAVVLWHPGESTADPEQVAGLASTRTFPLRS 465
Query: 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
F SY M +NL+ Q G E+A +L+EQSF Y
Sbjct: 466 SFAPSYNMTINLVQ-----------------QMG--PEQAHRLLEQSFAQY 497
>gi|3395783|gb|AAC78607.1| putative RNA helicase Ski2w [Homo sapiens]
Length = 1246
Score = 305 bits (782), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 276/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 269 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 323
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 324 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 381
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D+ RG
Sbjct: 382 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDVERGV 435
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 436 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 495
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 496 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 534
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 535 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 590
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 591 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 650
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 651 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 710
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 711 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 755
>gi|344307274|ref|XP_003422307.1| PREDICTED: helicase SKI2W [Loxodonta africana]
Length = 1246
Score = 305 bits (782), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 277/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VSS P P +E+ W + + V++F + + A + F D FQ+ +I
Sbjct: 269 VSSPEVPKPPPQEQ--WAIPVDVTSPVEDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 323
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 324 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 381
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D RG
Sbjct: 382 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDAERGV 435
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 436 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGN 495
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 496 SSKTQGELFLLLDSRGTFHTKGY--------------YAAVEAKKERMSKHAQ------- 534
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + + A R + L LR+R LP + F F+R CD L +
Sbjct: 535 -TFGAKQPTHHGGPAQDRGVY---LSLLASLRARAQLPVVVFTFSRGRCDEQASGLTSLD 590
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 591 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLQRGLGVHHSGILPILKEIVEML 650
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V ++ K S L E QMAGRAGRRG+D
Sbjct: 651 FSRGLVKVLFATETFAMGVNMPARTVVFDTMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 710
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 711 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 755
>gi|289428231|ref|ZP_06429927.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
gi|289158612|gb|EFD06819.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
Length = 917
Score = 305 bits (782), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 190/525 (36%), Positives = 271/525 (51%), Gaps = 41/525 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVARHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN--YLQLSTSEVKPYKDG 386
G ++ S RRPVPL + + L L D + R +N ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSR-----RPTGVNPELTSIAKEEARFQRDD 233
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPA 444
R R + + FG + R Q I + L ++LPA
Sbjct: 234 SRRPRGRSGKGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPA 293
Query: 445 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKG 497
I F+F+R GCDAAV L + +L+ + +L A +R L + R +
Sbjct: 294 IIFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAA 353
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 354 FERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQ 413
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 414 THADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTY 473
Query: 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 474 NMAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 47.8 bits (112), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|2347134|gb|AAB67978.1| helicase [Homo sapiens]
Length = 1246
Score = 305 bits (782), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 276/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 269 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 323
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 324 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 381
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D+ RG
Sbjct: 382 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDVERGV 435
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 436 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 495
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 496 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 534
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 535 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 590
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 591 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 650
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 651 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 710
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 711 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 755
>gi|377558144|ref|ZP_09787758.1| putative helicase [Gordonia otitidis NBRC 100426]
gi|377524713|dbj|GAB32923.1| putative helicase [Gordonia otitidis NBRC 100426]
Length = 937
Score = 305 bits (782), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 199/563 (35%), Positives = 284/563 (50%), Gaps = 53/563 (9%)
Query: 145 EMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRR 204
E + D A F +D FQR + A G V+V APT +GKT++ E A +A +
Sbjct: 4 EHTEFDRFAEGLSFHLDDFQRVACHALEDGRGVLVCAPTGAGKTIVGEFAVHLALAGGTK 63
Query: 205 IFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGM 264
FYTTP+KALSNQK+ + G VGLLTGDS+IN +A +++MTTE++RNM+Y
Sbjct: 64 CFYTTPIKALSNQKYADLVAVHGKQAVGLLTGDSSINSDAPVVVMTTEVVRNMIY----- 118
Query: 265 VSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
++ L + +V+DEVH+L+D RG VWEE+I+ V+++ LSATV+NA+E WI
Sbjct: 119 -ANSPALQGLSHVVMDEVHFLADRFRGAVWEEVILGLDPSVRVVSLSATVSNAEEFGDWI 177
Query: 325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 384
+ G+ +I RPVPL + + + L D + K +N E+K Y
Sbjct: 178 QTVRGEVTVIVDEHRPVPLQQHMLVGSQMFDLFDPHWQGGG-KPQVN------PELKRYI 230
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
+ R+ A + A+ R Q+ +D +LPA
Sbjct: 231 RHRMLLADEREGARGRDRRSGRGRTRSPARGRGPGALARPQLVARLD------REGLLPA 284
Query: 445 IWFIFNRRGCDAAV-QYL---------EDCNLLDECEMSEV-ELALKRFRILYPDAVREP 493
I FIF+R GCDAA+ Q L E+ + +DE + E+A +L D R
Sbjct: 285 IGFIFSRVGCDAALAQCLRSGLTLLTPEESSAVDEVVDRHITEIAPGDADVLGVDEWR-- 342
Query: 494 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
GL +G AAHHAG LP ++ +EELF +GLV++VFATETLA GINMPAR+ VL L K
Sbjct: 343 --AGLRRGFAAHHAGLLPTFRHTVEELFVKGLVRMVFATETLALGINMPARSVVLERLVK 400
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQF 613
+ LT E Q+ GRAGRRGID GH V+V TP E+ L A PL S F
Sbjct: 401 FNGESHVDLTPGEFTQLTGRAGRRGIDVEGHAVVVWTPELVPEQVAGLAGARTFPLRSSF 460
Query: 614 TASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKD 673
Y M +NL+ R L +R+L+ +SF + ++
Sbjct: 461 APEYNMAVNLI-------------------GRRGLAGSRELLNRSFAQFQADRSVVGQSR 501
Query: 674 ELCKIQKETDVLTSEISDDAIDR 696
++ + + L E++ A R
Sbjct: 502 KVDDMYRRLRKLDVELAGAATKR 524
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 113/255 (44%), Gaps = 27/255 (10%)
Query: 927 TKVARLKKKIARTEGFKEYKKIVDTVKFTEEK---IKRLKARSKRLTKRIEQIEPSGWKE 983
T++ARL+ ++ R + D + E++ I+ + + + + +R + +
Sbjct: 687 TELARLRHEL-RAHPAHQIANGDDLFRLAEQRNRLIREIVSAERAIDERTSTLGVT---- 741
Query: 984 FLRISNVIHETRALD-INTQV-IFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAA 1041
F RI V+ E L+ + +V + P G + I E++L + +R I L PA+L+A
Sbjct: 742 FDRIVGVLMEFGYLEKVRNEVEVTPTGHLLSRIYSESDLLVTECIRAGIWDTLGPAELSA 801
Query: 1042 VCASLVSEGIK-----VRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPC 1096
V A++V E + N+++ T + +++ + +++ +HGV
Sbjct: 802 VVAAMVFESRRDSHAGADAMPGNTAL---RTAIAETVDIWHQ----VTDVERRHGVSPTR 854
Query: 1097 CLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLPDVDQ 1151
D+ FS V WASG + E + L GD R R+ +DLL QI D
Sbjct: 855 EPDTGFSIAVSLWASGRSLTESLAAAGERGQLLSPGDFVRWNRQVVDLLEQIRLGVGDDA 914
Query: 1152 RLQKNAVDASNVMDR 1166
L ++A A + R
Sbjct: 915 PLARSARSAVGAIRR 929
>gi|422431407|ref|ZP_16508285.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
gi|422534720|ref|ZP_16610644.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
gi|314978079|gb|EFT22173.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
gi|315088266|gb|EFT60242.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
Length = 917
Score = 305 bits (781), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 190/525 (36%), Positives = 271/525 (51%), Gaps = 41/525 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVARHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN--YLQLSTSEVKPYKDG 386
G ++ S RRPVPL + + L L D + R +N ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSR-----RPTGVNPELTSIAKEEARFQRDD 233
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPA 444
R R + + FG + R Q I + L ++LPA
Sbjct: 234 SRRPRGRSGKGKRSVSYGTGRFGGTSAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPA 293
Query: 445 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKG 497
I F+F+R GCDAAV L + +L+ + +L A +R L + R +
Sbjct: 294 IIFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAA 353
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 354 FERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQ 413
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 414 THADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTY 473
Query: 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 474 NMAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 47.8 bits (112), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|403166078|ref|XP_003325991.2| hypothetical protein PGTG_07821 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166060|gb|EFP81572.2| hypothetical protein PGTG_07821 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1289
Score = 305 bits (781), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 189/525 (36%), Positives = 270/525 (51%), Gaps = 57/525 (10%)
Query: 140 KEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATV 199
KE N V +A Y F +D FQ+ +I G SV V+A TS+GKT++AE A
Sbjct: 290 KELANFRELVPNMARQYPFELDTFQKEAIYHLEMGDSVFVAAHTSAGKTVVAEYAVALAR 349
Query: 200 ANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLY 259
+ R YT+P+KALSNQKFR+FR+TF VG+LTGD +N EA LI+TTEILR+MLY
Sbjct: 350 RHMTRCIYTSPIKALSNQKFRDFRQTFDAETVGILTGDVQVNPEASCLILTTEILRSMLY 409
Query: 260 QSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADE 319
+ ++ DV+ +V DEVHY++D RG VWEE+II P V II LSATV N E
Sbjct: 410 KGADLIR------DVEFVVFDEVHYINDSERGVVWEEVIIMLPAHVTIILLSATVPNTKE 463
Query: 320 LAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKL-----SLNYL 373
A W+G+ K +I++ +RPVPL + + ++D KG+ +++ S+ L
Sbjct: 464 FADWVGRTKRKDIYVISTPKRPVPLEHFLYANKEIHKIVDAKGEFLSQGWKDAIESMKRL 523
Query: 374 QLSTSEVKPY----------KDGGSRRRNSRKHADMNSNN------------------IV 405
Q+ E G +R R AD
Sbjct: 524 QVKEREASGQAPLTRLGHNAAKQGPQRGQQRGRADKRGGRGSQSSSHFSSAMSRGGGGGP 583
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
S HQ +N + + + L+ +++LP + F F+++ C+ + + +
Sbjct: 584 NSGRGHQEDQN-----------RWVHLVGMLKKKELLPVVAFTFSKKRCEENATSMPNTD 632
Query: 466 LLDECEMSEVELALKR--FRILYPDAVREPAIKG---LLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ + ++R R+ D I+ L +G+A HH G LPI K +E L
Sbjct: 633 LCSAKEKSEIHIVIERSLTRLNGTDKKLPQIIRMRDLLARGIAVHHGGLLPIVKEVVEIL 692
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVK++FATET A G+NMPAR V S + K +L S E QM+GRAGRRG+D
Sbjct: 693 FARGLVKILFATETFAMGVNMPARCVVFSGIQKHDGRSFRELLSGEYTQMSGRAGRRGLD 752
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+ G V+++ K++ L SQF +Y MVLNLL
Sbjct: 753 STGVVIIICGNEVPDTVGLHKMILGPATKLQSQFRLTYNMVLNLL 797
>gi|422390285|ref|ZP_16470380.1| HelY [Propionibacterium acnes HL103PA1]
gi|422465274|ref|ZP_16541881.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
gi|422564375|ref|ZP_16640026.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
gi|314967064|gb|EFT11163.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
gi|315092732|gb|EFT64708.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
gi|327327198|gb|EGE68974.1| HelY [Propionibacterium acnes HL103PA1]
Length = 917
Score = 305 bits (781), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 188/524 (35%), Positives = 270/524 (51%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVARHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPVPL + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFG--QHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
R R + + FG Q P I + L ++LPAI
Sbjct: 235 RRPRGRSGKGKHSVSYGTGRFGGASAQRRGRGGRPRGPRNQPSRIQVVRSLHKANLLPAI 294
Query: 446 WFIFNRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA-----IKGL 498
F+F+R GCDAAV L + +L+ + E ++ +R D R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRHGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKVIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +G+ V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGYAVVCWQPGMDPRAVAGLASRRTYPLNSAFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|294790907|ref|ZP_06756065.1| putative ATP-dependent RNA helicase [Scardovia inopinata F0304]
gi|294458804|gb|EFG27157.1| putative ATP-dependent RNA helicase [Scardovia inopinata F0304]
Length = 849
Score = 305 bits (781), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 188/495 (37%), Positives = 264/495 (53%), Gaps = 42/495 (8%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +DKFQ+ ++ G +++V+APT +GKT+IA+ A + + FYTTP+KALSNQ
Sbjct: 30 FELDKFQKRALRELEEGKNLLVAAPTGAGKTVIADFAIFLAQFHNVKAFYTTPIKALSNQ 89
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + + +G + VGLLTGD +IN +A I++MTTE+LRNMLY+ S L + +
Sbjct: 90 KYHDLVKVYGSDRVGLLTGDMSINSQADIIVMTTEVLRNMLYE------GSSSLRALKYV 143
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
VLDE+HYLSD RG VWEE+II+ P V+++ LSATV+N ++ A WI + GKT LI S
Sbjct: 144 VLDEIHYLSDRMRGGVWEEVIIHLPASVKVVGLSATVSNVEDFADWIESVRGKTSLIVSE 203
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP----YKDGGSRRRNS 393
RPVPL L ++ ++ +L YL + P + D +
Sbjct: 204 NRPVPL---------LQEVMVQQSARKEPRLFDLYLDEGRKTINPALISFLDSMDKDALR 254
Query: 394 RKHADMNSNNIVTSFGQHQLSKNSINAIRRS---QVPQVIDTLWHLRSR----DMLPAIW 446
R+ D NS ++ + + S RS +V W L +LPAI+
Sbjct: 255 RQRMDRNSRLFPSTSRRRGGTGRSGPGRHRSHQAEVSHYTPNRWALVDEMDFLGLLPAIY 314
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI--------LYPDAVREPAI--- 495
FIF+R GCD AVQ L ++ + A + RI L PD R
Sbjct: 315 FIFSRNGCDRAVQQCMQAGL----RLTTQDEAARICRIVDSMVYSQLDPDDARALGFASF 370
Query: 496 -KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554
L +G+ AHHAG + +++ +E LF+ GL+KVVFATETLA GINMPAR+ V+ L K
Sbjct: 371 RAALEQGIGAHHAGMITLYRQIVEHLFELGLLKVVFATETLALGINMPARSVVVEKLEKF 430
Query: 555 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 614
L+ E Q+ GRAGRRGID G+ V+ L V PL S F+
Sbjct: 431 NGISHEPLSPGEFTQLTGRAGRRGIDTVGYAVVADHRGFSPHTLVALASKRVYPLHSSFS 490
Query: 615 ASYGMVLNLLAGAKV 629
S+ M +NLL A V
Sbjct: 491 PSFNMAVNLLNSADV 505
Score = 44.7 bits (104), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 9/197 (4%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVI----HETRALDINTQVIFPLGETAA 1012
+K RL A RL +R S ++F RI +++ + + D +V P G+
Sbjct: 622 QKWARLTAHMDRLQERYHSRTGSVSRKFDRICSILEVIGYVRKDPDRGYRVTAP-GQLLR 680
Query: 1013 AIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 1072
I E ++ +A VL + I L P +LA + + V E + R + + P + +
Sbjct: 681 RIYSERDILVAQVLLSGITDRLNPEELACIASGFVYEP-RSRADSSGLPRHFPGGSKGKI 739
Query: 1073 INVLDEHRSSFLELQ---EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDL 1129
+ + ++Q E +G+E D ++ W S +++ D + GD
Sbjct: 740 AQAVGHIMVAHTKIQALCEDYGLEPLPEPDFGMCQIIYDWVSDKPLTQVLDDTDMTGGDF 799
Query: 1130 ARLLRRTIDLLAQIPKL 1146
R +RT+D+L QI L
Sbjct: 800 VRNCKRTVDILTQISAL 816
>gi|282853649|ref|ZP_06262986.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
gi|282583102|gb|EFB88482.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
Length = 917
Score = 305 bits (780), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 189/524 (36%), Positives = 268/524 (51%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVARHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPVPL + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFG--QHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
R R + + FG Q P I + L ++LPAI
Sbjct: 235 RRPRGRSGKGKHSVSYGTGRFGGASAQRRGRGGRPRGPRNQPSRIQVVRSLHKANLLPAI 294
Query: 446 WFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGL 498
F+F+R GCDAAV L D L + E ++ +R D R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRHGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKVIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +G+ V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGYAVVCWQPGMDPRAVAGLASRRTYPLNSAFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 47.8 bits (112), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|386071112|ref|YP_005986008.1| putative helicase [Propionibacterium acnes ATCC 11828]
gi|353455478|gb|AER05997.1| putative helicase [Propionibacterium acnes ATCC 11828]
Length = 917
Score = 305 bits (780), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 188/524 (35%), Positives = 270/524 (51%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVARHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPVPL + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFG--QHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
R R + + FG Q P I + L ++LPAI
Sbjct: 235 RRPRGRSGKGKHSVSYGTGRFGGASAQRRGRGGRPRGPRNQPSRIQVVRSLHKANLLPAI 294
Query: 446 WFIFNRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA-----IKGL 498
F+F+R GCDAAV L + +L+ + E ++ +R D R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRHGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKVIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +G+ V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGYAVVCWQPGMDPRAVAGLASRRTYPLNSAFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|422459132|ref|ZP_16535780.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
gi|315103795|gb|EFT75771.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
Length = 917
Score = 305 bits (780), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 188/524 (35%), Positives = 270/524 (51%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVARHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPVPL + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFG--QHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
R R + + FG Q P I + L ++LPAI
Sbjct: 235 RRPRGRSGKGKHSVSYGTGRFGGASAQRRGRGGRPRGPRNQPSRIQVVRSLHKANLLPAI 294
Query: 446 WFIFNRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA-----IKGL 498
F+F+R GCDAAV L + +L+ + E ++ +R D R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRHGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKVIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +G+ V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGYAVVCWQPGMDPRAVAGLASRRTYPLNSAFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 47.8 bits (112), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|1754827|gb|AAB52523.1| helicase-like protein [Homo sapiens]
Length = 1245
Score = 305 bits (780), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 200/525 (38%), Positives = 276/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 268 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 322
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KAL+NQKFR+FR TFGD VG
Sbjct: 323 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALTNQKFRDFRNTFGD--VG 380
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D+ RG
Sbjct: 381 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDVERGV 434
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 435 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 494
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 495 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 533
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 534 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 589
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 590 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 649
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 650 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 709
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 710 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 754
>gi|227547244|ref|ZP_03977293.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum
subsp. longum ATCC 55813]
gi|227212203|gb|EEI80099.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum
subsp. infantis ATCC 55813]
Length = 863
Score = 305 bits (780), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 204/535 (38%), Positives = 282/535 (52%), Gaps = 78/535 (14%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + +A GS+V+V+APT +GKT++A+ A + FYTTP+KALSNQ
Sbjct: 45 FELDGFQTEANDALEAGSNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKALSNQ 104
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + + +G + VGLLTGD++IN EA I++MTTE+LRNMLY V S + L + +
Sbjct: 105 KYHDLVDVYGPDKVGLLTGDTSINSEADIVVMTTEVLRNMLY-----VRSTT-LNALRYV 158
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
+LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 159 ILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVISE 218
Query: 338 RRPVPLTWYF------STKTALLPLLDEKGK-----HMNRKLSLNYLQLSTSEVKPYKDG 386
RPVPL + T+ +L L G +N +L QL D
Sbjct: 219 HRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQL---------DR 269
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSRDMLP 443
+ RR + D + KN R P+ V+D L LR MLP
Sbjct: 270 KAARRRGEERPDKRKGFGRGR--GGKGVKNRAPKAER-HTPRRWAVVDELNFLR---MLP 323
Query: 444 AIWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVR 491
I+FIF+R GCD AV+ + L DE EM E +L + + L R
Sbjct: 324 GIYFIFSRNGCDQAVEQCINAGLKLTTDEEVTRIRRIVDEMVEGQLTQEDLKALQFSKFR 383
Query: 492 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L
Sbjct: 384 ----FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKL 439
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVE 607
K +G + LT E Q+ GRAGRRGID GH ++V P A K ++
Sbjct: 440 EKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY---- 495
Query: 608 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F ++ M +NLL N SD E AR ++QSF +
Sbjct: 496 PLHSSFRPTFNMAVNLL---------NSSD----------YETARVTLDQSFAQW 531
>gi|68076863|ref|XP_680351.1| ATP dependent RNA helicase [Plasmodium berghei strain ANKA]
gi|56501272|emb|CAH98487.1| ATP dependent RNA helicase, putative [Plasmodium berghei]
Length = 1299
Score = 305 bits (780), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 201/617 (32%), Positives = 318/617 (51%), Gaps = 67/617 (10%)
Query: 43 LSSNSIQFQASYKSPKSFFPTEHKLT-DADEAADEYDDDIDDDDDEEAADEYDDVSGE-- 99
+ N I+ + +Y+S + P ++K+ D + + ++ I D EE +E ++
Sbjct: 68 IKENEIEMEINYESSEYNAPIDYKINVDNIISNHKSNNKIKDQIKEEIYNEVGSINRSNN 127
Query: 100 -VSDEIQQSDDEFEVSSDSSPAPSWREEFKWQRVE--KLCNE-----VKEFG-------- 143
+++I++++ + + + +++E + + +E K N ++EFG
Sbjct: 128 FFNNKIRKTNGKNDQTKTEIRTNAYKEPVREKLIENSKTINNDDVLVLEEFGSDVNCIHK 187
Query: 144 ---------NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAA 194
N++ + A Y F +D FQ+ SIE R SV+VSA TS+GKT+IAE A
Sbjct: 188 CVRPQSYVHNKLSESITPARTYKFELDTFQKKSIECLERNESVLVSAHTSAGKTVIAEYA 247
Query: 195 AVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEIL 254
+ +++R+ YT+P+KALSNQK+R+ E F D VGL+TGD +IN EA I++MTTEIL
Sbjct: 248 IALGLRDKQRVIYTSPIKALSNQKYRDLSEEFKD--VGLITGDISINPEASIIVMTTEIL 305
Query: 255 RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATV 314
R+MLY+ + +V ++ DE+HY+ D RG +WEE II P V+ I LSAT+
Sbjct: 306 RSMLYRGSSLTK------EVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATI 359
Query: 315 ANADELAGWIGQIHGKT-ELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNY 372
N + A W+ I + ++ + RP PL Y + T + + L+ ++ K+ + N+
Sbjct: 360 PNGIQFAEWVSSIKNQACHIVYTDYRPTPLQHYIYPTSSESVFLICDENKNFKKD---NF 416
Query: 373 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 432
++ V KD N++ + N N R +
Sbjct: 417 IK----AVNALKDKSMLDENNQSGGN-----------------NKFNKRMRKNTYDIEKI 455
Query: 433 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVR 491
+ SR+ P I F F+++ C+ L NL D+ E + EL +IL D
Sbjct: 456 VQMCHSRNYTPLIIFAFSKKECEVNATTLHKVNLTDDSEKEIIKELYENAIQILADDDRA 515
Query: 492 EPAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
P ++ LL+G+ HH G LPI K IE +FQ L+KV+F+TET + GINMPA+T V
Sbjct: 516 LPQVQFILPLLLRGIGIHHGGLLPIIKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVV 575
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
+SL K + +TS E QMAGRAGRRG+D+RG V+++ ++ KL
Sbjct: 576 FTSLKKFDGLEKRLITSGEYIQMAGRAGRRGLDDRGIVIIMLDSPLHWKDAEKLFVGEAN 635
Query: 608 PLVSQFTASYGMVLNLL 624
LVSQF Y M+LNLL
Sbjct: 636 RLVSQFHLGYNMILNLL 652
>gi|449297011|gb|EMC93030.1| hypothetical protein BAUCODRAFT_37952 [Baudoinia compniacensis UAMH
10762]
Length = 1288
Score = 304 bits (779), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 190/523 (36%), Positives = 270/523 (51%), Gaps = 62/523 (11%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V E+A + F +D FQ+ ++ G SV V+A TS+GKT++AE A + + YT
Sbjct: 303 VPEMARTWPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYT 362
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TF D VG+LTGD I EA LIMTTEILR+MLY+ ++
Sbjct: 363 SPIKALSNQKFRDFRTTFDD--VGILTGDVQIRPEASCLIMTTEILRSMLYRGADLIR-- 418
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D+ RG VWEE+II P+ V +ICLSATV N E A W+G+
Sbjct: 419 ----DVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTLICLSATVPNTYEFASWVGRTK 474
Query: 329 GK-TELITSSRRPVPLTWYFSTKTALLPLLD------EKG-KHMNRKLSLNYLQLSTSE- 379
K +I++ +RPVPL Y + ++D EKG K N ++ L+ +
Sbjct: 475 KKDIYVISTPKRPVPLEHYLWADKKMFKIVDANKNFIEKGWKDANDAMTGRDKVLAAEQK 534
Query: 380 -----------------------------VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQ 410
P + GG ++R + A+ NI
Sbjct: 535 AKEKEDAAVAAGRGGRGGRGQGGRGQQQRGGPNQRGGPQQRGRGQVANRGQGNIAR---- 590
Query: 411 HQLSKNSINAIRRSQVPQV-IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDE 469
+ +Q + + + HLR ++LP FIF+++ C+ + L + +
Sbjct: 591 ---TGRGGGRTTAAQDRNIWVHLVQHLRKEELLPCCIFIFSKKRCEESADALANLDFCTA 647
Query: 470 CEMSEVELAL-KRFRILYPDAVREPAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRG 524
E S + + L K L PD + P I+ L +G+A HH G LPI K +E LF +
Sbjct: 648 SERSAIHMILEKSLARLKPDDRQLPQIRRIRELLSRGIAVHHGGLLPIVKECVEILFAKT 707
Query: 525 LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 584
LVKV+FATET A G+N+P RT V S K L E QMAGRAGRRG+D G+
Sbjct: 708 LVKVLFATETFAMGLNLPTRTVVFSGFRKYDNKAFRDLLPGEYTQMAGRAGRRGLDTVGY 767
Query: 585 VVLVQTPYEGAEECCKL---LFAGVEPLVSQFTASYGMVLNLL 624
V+LV + A +L + L SQF +Y M+LNLL
Sbjct: 768 VILVSPGADEAPPAARLRQMMLGDPTKLRSQFRLTYNMILNLL 810
>gi|426352519|ref|XP_004043759.1| PREDICTED: helicase SKI2W isoform 2 [Gorilla gorilla gorilla]
Length = 1053
Score = 304 bits (779), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 202/525 (38%), Positives = 275/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 76 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 130
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 131 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 188
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY S + D++ ++ DEVHY++D RG
Sbjct: 189 LLTGDVQLHPEASCLIMTTEILRSMLY------SGSDVIRDLEWVIFDEVHYINDAERGV 242
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 243 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 302
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 303 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 341
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 342 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 397
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 398 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 457
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 458 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 517
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 518 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 562
>gi|58271052|ref|XP_572682.1| translation repressor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57228941|gb|AAW45375.1| translation repressor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1185
Score = 304 bits (779), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 210/596 (35%), Positives = 304/596 (51%), Gaps = 78/596 (13%)
Query: 90 ADEYDDVSGEVSDEIQQSD----DEFEVSSDSSPAPSWREEFK------WQRVEKLCNEV 139
D+ +DV G +Q SD D + +P PS +++FK W V + ++
Sbjct: 225 GDKDEDVDGIDLKPVQSSDKNIDDLLPIGRLPAP-PSSKKQFKAVAKKEWAHVVDVNQKL 283
Query: 140 KEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATV 199
+ F NE+ V E+A Y F +D FQ+ ++ G SV V+A TS+GKT++AE A
Sbjct: 284 ENF-NEL--VPEMAKDYPFELDNFQKEAVYRLEMGDSVFVAAHTSAGKTVVAEYAIALAA 340
Query: 200 ANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLY 259
+ + YT+P+KALSNQKFR+F+ TF + VG+LTGD IN E LIMTTEILR+MLY
Sbjct: 341 KHMTKTIYTSPIKALSNQKFRDFKTTFEPSTVGILTGDVQINAEGSCLIMTTEILRSMLY 400
Query: 260 QSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADE 319
+ ++ DV+ +V DEVHY++D RG VWEE+II P+ V II LSATV N E
Sbjct: 401 KGADLIR------DVEFVVFDEVHYVNDAERGVVWEEVIIMLPEHVNIILLSATVPNTKE 454
Query: 320 LAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTS 378
A W+G+ K +I++ RPVPL + ++ + K + S L
Sbjct: 455 FADWVGRTKKKDIYVISTPMRPVPLEHFLWAGRETHKIVSSQSKFLMEGYSSASDALRRK 514
Query: 379 EVKPYKDGG---SRRRNSRKHADMNSNNIVTS----FGQHQLSKNSINAIRRSQVPQ--- 428
+ K + G +R R A + + ++ T F + +N N + PQ
Sbjct: 515 QDKEREANGLPPVQRTGGRGGAAIRAKDLPTGKSAPFTRIGAGRNHTNRGGGNGPPQAAF 574
Query: 429 ----------------------VID-TLW-----HLRSRDMLPAIWFIFNRRGCDAAVQY 460
V+D +W +L+ +LP + F+F+++ C+ Q
Sbjct: 575 GGGRGGRGGGRGGFGGSSRPSHVLDQNIWTHLISYLKKNMLLPVVNFVFSKKRCEEYAQT 634
Query: 461 LEDCNLLDEC---EMSEV----ELALKRFR---ILYPDAVREPAIKGLL-KGVAAHHAGC 509
L LD C E SEV E AL R + P +R ++ LL +G+ HH G
Sbjct: 635 LS----LDLCTAKEKSEVHITWERALTRLKGEDKTLPQILR---MRELLSRGIGVHHGGL 687
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP+ K +E LF RGLVKV+FATET A G+NMPA++ V S + K + L E Q
Sbjct: 688 LPLVKEVVEILFARGLVKVLFATETFAMGVNMPAKSVVFSGIRKHDGTSFRNLLPGEYTQ 747
Query: 570 MAGRAGRRGIDNRGHVVLVQT-PYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
MAGRAGRRG+D G V+++ EE +++ L SQF +Y M+LNLL
Sbjct: 748 MAGRAGRRGLDTTGTVIILSGDELPSVEELNEMMLGVPNRLSSQFRLTYNMILNLL 803
>gi|410925190|ref|XP_003976064.1| PREDICTED: LOW QUALITY PROTEIN: helicase SKI2W-like [Takifugu
rubripes]
Length = 1320
Score = 304 bits (779), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 207/545 (37%), Positives = 284/545 (52%), Gaps = 67/545 (12%)
Query: 108 DDEFEVSSDSSPAP------------SWREEFKWQRVEKLCNEVKEFGNEMIDVDELASI 155
D E + SSP P W E KW + + +F + A
Sbjct: 290 DLGIEEAGSSSPQPEKQKDDERKTKEKWAETKKWAIPVNVTSPCDDFYKR---IPNPAFQ 346
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F +D FQ+ +I + SV V+A TS+GKT++AE A + + R YT+P+KALS
Sbjct: 347 WPFELDVFQKQAILRLEQHDSVFVAAHTSAGKTVVAEYAIALSQKHMTRTIYTSPIKALS 406
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQKFR+F+ TFGD VGLLTGD I+ E+ LIMTTEILR+MLY ++ D++
Sbjct: 407 NQKFRDFKNTFGD--VGLLTGDVQISPESSCLIMTTEILRSMLYNGSEVIR------DLE 458
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
++ DEVHY++D RG VWEE++I P V II LSATV NA E + WIG+I + +I
Sbjct: 459 WVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRHIYVI 518
Query: 335 TSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ +RPVPL + T+ + LLD G +N+ Y +
Sbjct: 519 STMKRPVPLEHHLYTGNSNKTQKEMFLLLDAAGSFLNKGY--------------YAAVDA 564
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH-LRSRDMLPAIWF 447
R+ + KHA SFG S+N+ + R+ V TL H L R P + F
Sbjct: 565 RKERTSKHAQ--------SFGAKTSSQNTTASQDRA----VWLTLVHFLSQRQQTPVVAF 612
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEV----ELALKRFRILYPDAVREPAIKGLLK-GV 502
F+R CD + L+ +L E +E+ + +L R R + ++ LLK GV
Sbjct: 613 TFSRTRCDENARSLDSLDLTTSVEKAEIHSFFQKSLSRLRGGDRQLPQILLMRDLLKKGV 672
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
A HH+G LPI K E LF RGLVKV+FATET A G+NMPART V S+ K +G L
Sbjct: 673 AVHHSGILPILKEVTEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNL 732
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL---LFAGVEPLVSQFTASYGM 619
E QMAGRAGRRG+D G V+++ G +E L + L SQF +Y M
Sbjct: 733 LPGEYIQMAGRAGRRGLDATGTVIILCK--AGVQEMADLHVMMMGKPTVLHSQFRLTYTM 790
Query: 620 VLNLL 624
+LNLL
Sbjct: 791 ILNLL 795
>gi|379058684|ref|ZP_09849210.1| DEAD/DEAH box helicase [Serinicoccus profundi MCCC 1A05965]
Length = 961
Score = 304 bits (779), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 221/643 (34%), Positives = 316/643 (49%), Gaps = 107/643 (16%)
Query: 160 IDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKF 219
+D FQ +IEA G+ V+V+APT +GKT++ E A + R+ FYTTP+KALSNQK+
Sbjct: 33 LDDFQSEAIEAVQEGAGVLVAAPTGAGKTVVGEFAVALALETGRKAFYTTPIKALSNQKY 92
Query: 220 REFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVL 279
+ G NVGLLTGD++IN EA +++MTTE+LRNM+Y ++ L + +++
Sbjct: 93 HDLVARHGAANVGLLTGDASINGEAPVVVMTTEVLRNMMY------AASPTLRGLGFVIM 146
Query: 280 DEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-----ELI 334
DEVHYL+D RG VWEE+II+ P+ VQ+I LSATV+NA+E W+ Q+ G+ +I
Sbjct: 147 DEVHYLADRWRGAVWEEVIIHLPEAVQVISLSATVSNAEEFGDWLRQVRGRGNPESLRVI 206
Query: 335 TSSRRPVPLTWYFSTKTALLPLL------DEKGKHMNRKLSLNYLQ-LSTSEVKPYKD-- 385
S RPVPL + L L G +++ L+ +S +E D
Sbjct: 207 VSEHRPVPLWQHMMVGQRLYDLFVTDGLRAAPGVDGTTRVNPELLEAISAAERSARADSG 266
Query: 386 ---------------------GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 424
G R +SR++ D + G S+ S+ S
Sbjct: 267 WRRDDPGGPRGRRGEPRGRGRSGQARGHSRRYDDARGSG----GGDAGFSRGSLPGGVAS 322
Query: 425 QVPQVIDTLWHLRSRD-MLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKR 481
+ QVID L RD +LPAI FIF+R GCDAAVQ L L+ E + +
Sbjct: 323 RA-QVIDRL----DRDALLPAITFIFSRAGCDAAVQQLLGRGTRLIPEDQGQTI------ 371
Query: 482 FRILYPDAVRE--PA----------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVV 529
R L + V E PA ++GL +G AAHHAG LP+++ +EELF G V+ V
Sbjct: 372 -RALVAERVAEVDPADLGVLGYHDFVEGLSRGYAAHHAGMLPLFREIVEELFTAGRVRSV 430
Query: 530 FATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ 589
FATETLA GINMPART VL L K +T E Q+ GRAGRRGID GH V++
Sbjct: 431 FATETLALGINMPARTVVLEKLVKFNGEEHAPVTPAEYTQLTGRAGRRGIDIEGHAVVLW 490
Query: 590 TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLE 649
+ L PL S F S M +NL+A Q GR +
Sbjct: 491 RRGVDPMDVAGLASTRTYPLRSSFRPSSNMAVNLVA-----------------QYGR--D 531
Query: 650 EARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKE 709
A +L++ SF + ++ +I+ T+ L + DR ++E
Sbjct: 532 RAHELLQASFAQFQADRSVVGLT---TQIRHNTEALEGYAASMVCDRGD--------FRE 580
Query: 710 MANLQEEL-KAEKRFRTELRRRMELKRFSALKDILKDFENGHL 751
++ +L + EK+ R + +R S + L+ E G +
Sbjct: 581 YGRMRHQLSEVEKK----AARTRQAQRRSDIGQALESLEPGQV 619
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 76/180 (42%), Gaps = 14/180 (7%)
Query: 967 KRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVL 1026
+R+T R + + F RI +++ L + + + G+ I E +L A L
Sbjct: 763 RRVTHRTNTLAAT----FERICDLLGAMGYLSEDGREVTDQGQRLRRIYTELDLVAAESL 818
Query: 1027 RNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL 1086
R L PA LAAV ++LV E +P T + V L E S + E+
Sbjct: 819 RRGTWRRLTPADLAAVVSTLVHE-------ARGDEPGDPPTPSVEVAEALGEMGSIWTEV 871
Query: 1087 QE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 1143
Q H + LD S MV WASG E++ L GD R ++ +DLL QI
Sbjct: 872 QAGKLAHNLTGDRELDPGISWMVHRWASGRGLEEVLRSGDLSAGDFVRRAKQVVDLLGQI 931
>gi|363420764|ref|ZP_09308855.1| ATP-dependent RNA helicase [Rhodococcus pyridinivorans AK37]
gi|359735431|gb|EHK84392.1| ATP-dependent RNA helicase [Rhodococcus pyridinivorans AK37]
Length = 766
Score = 304 bits (779), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 196/547 (35%), Positives = 278/547 (50%), Gaps = 56/547 (10%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A+ DF +D FQ + A V+V APT +GKT++ E AA +A R FYTTP+
Sbjct: 12 FATELDFPLDDFQVEACRALEDDRDVLVCAPTGAGKTVVGEFAARLALAAGGRCFYTTPI 71
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+ + FGD+ VGLLTGD +++ A +++MTTE+LR+ML+ + L
Sbjct: 72 KALSNQKYLDLSRRFGDDRVGLLTGDISLDPHAPVVVMTTEVLRSMLHGGSPL------L 125
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ +V+DEVHYL+D RG VWEE I+ P +V++ LSATV+NA+E GW+ + G
Sbjct: 126 HGLTHVVMDEVHYLADRERGAVWEEAILSLPDDVRLTSLSATVSNAEEFGGWLRGVRGDL 185
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
++ RPVPLT + L LL G ++ L E P
Sbjct: 186 AVVVEETRPVPLTQHMLAGGRLFDLLSPSGT-VDETLERYIAHRQLVEAAPGP------- 237
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
T G+ + + +P+V+ L + +LPAIWF F+R
Sbjct: 238 -------------ATGRGRRRRRARGAPGPAGADLPEVV---ARLEAEQLLPAIWFRFSR 281
Query: 452 RGCDAAV-QYLE-DCNLLDECEMSEVELALKRFRILYP----DAVREPA-IKGLLKGVAA 504
GCD AV + LE L + +++E+ R P DAV ++GL +G AA
Sbjct: 282 NGCDGAVAECLESSVRLTEAADVAEIRAVADRHTAALPPADLDAVGHAEWLEGLERGFAA 341
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HHAG +P ++ +EELF RGLV+VVFATETLA G+NMPART VL L K TA G ++L+
Sbjct: 342 HHAGLIPAFRHTVEELFARGLVRVVFATETLAVGVNMPARTVVLERLVKPTADGPVRLSP 401
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E Q+ GRAGRRGID GH V++ +P L A PL S Y +NL+
Sbjct: 402 GEYTQLTGRAGRRGIDVEGHAVVLWSPEAAPATVAGLAGARSYPLHSSLRVGYNTAVNLV 461
Query: 625 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDV 684
AGR + +R+ + +SF + + A D +
Sbjct: 462 -------------------AGRGIPGSREFLRRSFAQFQAERSVAALTDAVRANTTALRD 502
Query: 685 LTSEISD 691
L +E+ D
Sbjct: 503 LDTELGD 509
>gi|302652619|ref|XP_003018156.1| hypothetical protein TRV_07852 [Trichophyton verrucosum HKI 0517]
gi|291181768|gb|EFE37511.1| hypothetical protein TRV_07852 [Trichophyton verrucosum HKI 0517]
Length = 1295
Score = 304 bits (779), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 215/612 (35%), Positives = 312/612 (50%), Gaps = 67/612 (10%)
Query: 69 DADEAADEYDDDIDDDDD--------EEAADEYDDVSGEVSDEIQQSDDEFEVSS---DS 117
DA E A+E + ++D+D+ +E+ D E E S+DE ++ +
Sbjct: 216 DAQEGAEEVREALEDEDETELKHLPSQESGDTARKPGVEEGGEDSTSEDEEDIDALLPVE 275
Query: 118 SPAPSWREEF----------KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSS 167
PA R + +W V + E+ F E+ V ++A Y F +D FQ+ +
Sbjct: 276 YPALEPRGQLIQSSLKKSRKEWAHVVDVNKEITNF-YEL--VPDMAREYPFELDTFQKEA 332
Query: 168 IEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG 227
+ G SV V+A TS+GKT++AE A + + YT+P+KALSNQKFR+FR TF
Sbjct: 333 VYHLENGDSVFVAAHTSAGKTVVAEYAIALANKHMTKAIYTSPIKALSNQKFRDFRGTFD 392
Query: 228 DNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287
D VG+LTGD IN EA LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++D
Sbjct: 393 D--VGILTGDIQINPEASCLIMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVND 444
Query: 288 ISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWY 346
+ RG VWEE+II P+ V +I LSATV N E A W+G+ K +I++ +RPVPL Y
Sbjct: 445 LERGVVWEEVIIMLPEHVSLILLSATVPNTYEFASWVGRTKRKDIYVISTPKRPVPLEHY 504
Query: 347 FSTKTALLPLLD------EKG-KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADM 399
+ ++D EKG K + LS + + G + + +
Sbjct: 505 LWAGKEIYKIVDSEKRFIEKGWKDADDILSGRDKAKAQKAAEAQAARGGHQSDRGRGQGQ 564
Query: 400 NSNNIVTSF--------GQHQLSKNSINAIRRS----------QVPQV-IDTLWHLRSRD 440
+ + G+ Q S I I R+ Q V + + +LR R+
Sbjct: 565 RGSGQRGTGQRGGPQQRGRGQPSARGIGNIARTGRGGGRTSAAQDRNVWVHLVQYLRKRE 624
Query: 441 MLPAIWFIFNRRGCDAAVQYLED---CNLLDECEMSE-VELALKRFRILYPDAVREPAIK 496
MLPA F+F+++ C L + C D+ + VE +L R RI D + ++
Sbjct: 625 MLPACIFVFSKKRCGENADSLSNQDFCTAADKSAIHMVVEKSLTRLRIEDRDLPQIRKVR 684
Query: 497 GLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
LL +GV HH G LPI K +E LF +GLVK++FATET A G+N+P RT V S K
Sbjct: 685 ELLSRGVGVHHGGLLPIVKEIVEILFAKGLVKILFATETFAMGLNLPTRTVVFSGYRKHD 744
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC---KLLFAGVEPLVSQ 612
G L + E QMAGRAGRRG+D G V++V + + A K++ L SQ
Sbjct: 745 GRGFRDLLAGEYTQMAGRAGRRGLDTVGSVIIVTSGRDEAPPITTLRKMILGDPTKLRSQ 804
Query: 613 FTASYGMVLNLL 624
F +Y M+LNLL
Sbjct: 805 FRLTYNMMLNLL 816
>gi|332823595|ref|XP_003311222.1| PREDICTED: helicase SKI2W [Pan troglodytes]
Length = 1053
Score = 304 bits (779), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 202/525 (38%), Positives = 275/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 76 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 130
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 131 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 188
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY S + D++ ++ DEVHY++D RG
Sbjct: 189 LLTGDVQLHPEASCLIMTTEILRSMLY------SGSDVIRDLEWVIFDEVHYINDAERGV 242
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 243 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 302
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 303 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 341
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 342 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 397
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 398 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 457
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 458 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 517
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 518 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 562
>gi|134115014|ref|XP_773805.1| hypothetical protein CNBH2570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256433|gb|EAL19158.1| hypothetical protein CNBH2570 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1275
Score = 304 bits (779), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 210/596 (35%), Positives = 304/596 (51%), Gaps = 78/596 (13%)
Query: 90 ADEYDDVSGEVSDEIQQSD----DEFEVSSDSSPAPSWREEFK------WQRVEKLCNEV 139
D+ +DV G +Q SD D + +P PS +++FK W V + ++
Sbjct: 225 GDKDEDVDGIDLKPVQPSDKNIDDLLPIGRLPAP-PSSKKQFKAVAKKEWAHVVDVNQKL 283
Query: 140 KEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATV 199
+ F NE+ V E+A Y F +D FQ+ ++ G SV V+A TS+GKT++AE A
Sbjct: 284 ENF-NEL--VPEMAKDYPFELDNFQKEAVYRLEMGDSVFVAAHTSAGKTVVAEYAIALAA 340
Query: 200 ANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLY 259
+ + YT+P+KALSNQKFR+F+ TF + VG+LTGD IN E LIMTTEILR+MLY
Sbjct: 341 KHMTKTIYTSPIKALSNQKFRDFKTTFEPSTVGILTGDVQINAEGSCLIMTTEILRSMLY 400
Query: 260 QSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADE 319
+ ++ DV+ +V DEVHY++D RG VWEE+II P+ V II LSATV N E
Sbjct: 401 KGADLIR------DVEFVVFDEVHYVNDAERGVVWEEVIIMLPEHVNIILLSATVPNTKE 454
Query: 320 LAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTS 378
A W+G+ K +I++ RPVPL + ++ + K + S L
Sbjct: 455 FADWVGRTKKKDIYVISTPMRPVPLEHFLWAGRETHKIVSSQSKFLMEGYSSASDALRRK 514
Query: 379 EVKPYKDGG---SRRRNSRKHADMNSNNIVTS----FGQHQLSKNSINAIRRSQVPQ--- 428
+ K + G +R R A + + ++ T F + +N N + PQ
Sbjct: 515 QDKEREANGLPPVQRTGGRGGAAIRAKDLPTGKSAPFTRIGAGRNHTNRGGGNGPPQAAF 574
Query: 429 ----------------------VID-TLW-----HLRSRDMLPAIWFIFNRRGCDAAVQY 460
V+D +W +L+ +LP + F+F+++ C+ Q
Sbjct: 575 GGGRGGRGGGRGGFGGSSRPSHVLDQNIWTHLISYLKKNMLLPVVNFVFSKKRCEEYAQT 634
Query: 461 LEDCNLLDEC---EMSEV----ELALKRFR---ILYPDAVREPAIKGLL-KGVAAHHAGC 509
L LD C E SEV E AL R + P +R ++ LL +G+ HH G
Sbjct: 635 LS----LDLCTAKEKSEVHITWERALTRLKGEDKTLPQILR---MRELLSRGIGVHHGGL 687
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP+ K +E LF RGLVKV+FATET A G+NMPA++ V S + K + L E Q
Sbjct: 688 LPLVKEVVEILFARGLVKVLFATETFAMGVNMPAKSVVFSGIRKHDGTSFRNLLPGEYTQ 747
Query: 570 MAGRAGRRGIDNRGHVVLVQT-PYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
MAGRAGRRG+D G V+++ EE +++ L SQF +Y M+LNLL
Sbjct: 748 MAGRAGRRGLDTTGTVIILSGDELPSVEELNEMMLGVPNRLSSQFRLTYNMILNLL 803
>gi|332245658|ref|XP_003271973.1| PREDICTED: helicase SKI2W [Nomascus leucogenys]
Length = 1218
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 275/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 269 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 323
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 324 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 381
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D RG
Sbjct: 382 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDAERGV 435
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 436 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRREIYVISTVTRPVPLEHYLFTGN 495
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 496 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 534
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 535 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 590
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 591 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 650
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 651 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 710
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 711 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 755
>gi|336389976|gb|EGO31119.1| ATP-dependent RNA helicase [Serpula lacrymans var. lacrymans S7.9]
Length = 1209
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 184/504 (36%), Positives = 267/504 (52%), Gaps = 38/504 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V E+A Y F +D FQ+ ++ G SV V+A TS+GKT++AE A + R YT
Sbjct: 240 VPEMAHEYPFELDTFQKEAVYHLEMGDSVFVAAHTSAGKTVVAEYAIALAEKHMTRAIYT 299
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+F++TF ++VG+LTGD IN EA L+MTTEILR+MLY+ ++
Sbjct: 300 SPIKALSNQKFRDFKQTFSSSSVGILTGDVQINPEASCLVMTTEILRSMLYKGADLIR-- 357
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D RG VWEE+II P V II LSATV N E A W+G+
Sbjct: 358 ----DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTK 413
Query: 329 GK-TELITSSRRPVPLTWYFSTKTALLPLLD-----------EKGKHMNRKL-------- 368
K +I++++RPVPL Y ++D + G+ + RK
Sbjct: 414 KKDIYVISTAQRPVPLEHYIYAGRETFKIVDANRRWISEGYKDAGEALKRKQDKAREAAG 473
Query: 369 --SLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 426
+ + + + + GG+ R ++ A NN G+ I+ +
Sbjct: 474 LPPVQRVGARGAAPRGGQRGGTPTRGGQRGA--TPNNRGAPPGRGGGPSRIIHTGADKNL 531
Query: 427 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRIL 485
+ L HL+ + +LP + F F+++ C+ L + +L E SE+ +A+ K L
Sbjct: 532 --YVHLLNHLQKKTLLPVVVFTFSKKKCEENAGTLTNADLCTSVEKSEIHVAIEKALSRL 589
Query: 486 YPDAVREPAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 541
+ P I L +G+ HH G LPI K +E LF RGLVK++FATET A G+NM
Sbjct: 590 KGTDKKLPQISRMRDLLSRGIGVHHGGILPIVKEVVEILFGRGLVKILFATETFAMGVNM 649
Query: 542 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 601
PAR V S + K + E QMAGRAGRRG+D G V++V + +
Sbjct: 650 PARCVVFSGIRKHDGKSFRDILPGEYTQMAGRAGRRGLDPTGTVIIVVNDELPDQTSIQH 709
Query: 602 LFAGVEP-LVSQFTASYGMVLNLL 624
+ G L SQF +Y M+LNLL
Sbjct: 710 MMLGTPAKLQSQFRLTYNMILNLL 733
>gi|407646515|ref|YP_006810274.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
gi|407309399|gb|AFU03300.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
Length = 900
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 194/512 (37%), Positives = 268/512 (52%), Gaps = 54/512 (10%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQR++ A G SV+V APT +GKT++ E A +A + FYTTP+KALSNQ
Sbjct: 20 FSLDPFQRTACAALEEGHSVLVCAPTGAGKTVVGEFAVHLALAAGGKCFYTTPIKALSNQ 79
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
KF + E +G +VGLLTGD +IN +A +++MTTE+LRNMLY +S L + +
Sbjct: 80 KFADLTERYGRESVGLLTGDQSINSDAPVVVMTTEVLRNMLY------ASSDALRGLSYV 133
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVHYL+D RG VWEE+I++ P +V+++ LSATV+NA+E W+ + G T ++
Sbjct: 134 VMDEVHYLADRFRGAVWEEVILHLPPDVRLVSLSATVSNAEEFGAWMETVRGDTAVVVDE 193
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RPVPL + + L D ST + + R R+ A
Sbjct: 194 TRPVPLWQHVMVGRRMFDLFDTD---------------STDQKVLVDEDLVRFIKQRELA 238
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAA 457
D +N+ + + R +V L L +LPAI FIF+R GCD A
Sbjct: 239 D-RANSWGGPRNGRGGPRRDFRPLPRPEV------LAKLDEEGLLPAITFIFSRAGCDGA 291
Query: 458 V-QYLED-CNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGLLKGVAAHHAGCL 510
+ Q L +L + + +EV+ + + P A E + L +G+AAHHAG L
Sbjct: 292 LAQCLRSRLDLGRDEDRAEVDAIVDKHTGDLPKADLEVLGYWEWREALHRGLAAHHAGML 351
Query: 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQM 570
P ++ +EELF GLV+ VFATETLA GINMPART VL L K +LT E Q+
Sbjct: 352 PAFRHTVEELFVNGLVRAVFATETLALGINMPARTVVLERLVKFNGESHAELTPGEYTQL 411
Query: 571 AGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM 630
GRAGRRGID GH V++ P L PL S F Y M +NL+
Sbjct: 412 TGRAGRRGIDVEGHAVVLWQPEVDTSAVAGLASTRTYPLRSSFRPGYNMSINLI------ 465
Query: 631 HLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
D M A E+R L+E+SF +
Sbjct: 466 ------DRMGA-------AESRALLERSFAQF 484
Score = 44.3 bits (103), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 81/193 (41%), Gaps = 12/193 (6%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL ++ + +++ S + F RI ++ E R +++V G A I
Sbjct: 684 ERYNRLLRETETMRQKVAATTNSLARTFDRILGLLQE-RGFVHDSEVTAD-GRRLARIYS 741
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEP-STTVINVINV 1075
E++L +A LR + L PA+LA V + LV E + + S P V I V
Sbjct: 742 ESDLLVAECLRQGLWRGLGPAELAGVVSILVFESRQDGGYLGVSGPTAPIRRAVGETIRV 801
Query: 1076 LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLA 1130
E RS + +H + D F V WA G E ++ L GD
Sbjct: 802 WSELRSD----EARHKLPPTREPDLGFVTGVHKWARGDGLAESLLASGDQAAPLSAGDFV 857
Query: 1131 RLLRRTIDLLAQI 1143
R R+ IDLL QI
Sbjct: 858 RWCRQVIDLLDQI 870
>gi|83282250|ref|XP_729688.1| Homo sapiens KIAA0052 protein [Plasmodium yoelii yoelii 17XNL]
gi|23488188|gb|EAA21253.1| Homo sapiens KIAA0052 protein-related [Plasmodium yoelii yoelii]
Length = 1309
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 180/479 (37%), Positives = 260/479 (54%), Gaps = 39/479 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ+ SIE R SV+VSA TS+GKT+IAE A + +++R+ YT+P+K
Sbjct: 206 ARTYKFELDTFQKKSIECLERNESVLVSAHTSAGKTVIAEYAIALGLRDKQRVIYTSPIK 265
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+R+ E F D VGL+TGD +IN EA I++MTTEILR+MLY+ +
Sbjct: 266 ALSNQKYRDLSEEFKD--VGLITGDISINPEASIIVMTTEILRSMLYRGSSLTK------ 317
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
+V ++ DE+HY+ D RG +WEE II P V+ I LSAT+ N + A W+ I +
Sbjct: 318 EVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIKNQAC 377
Query: 332 ELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
++ + RP PL Y + T + + L+ ++ K+ + N+++ V KD
Sbjct: 378 HIVYTDYRPTPLQHYIYPTSSESVFLICDENKNFKKD---NFIK----AVNALKDRSMLD 430
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
N++ + N N R + + SR+ P I F F+
Sbjct: 431 ENNQSGGN-----------------NKFNKRMRKNTYDIEKIVQMCHSRNYTPLIIFAFS 473
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVAAH 505
++ C+ L NL D+ E + EL +IL D P ++ LL+G+ H
Sbjct: 474 KKECEVNATTLHKVNLTDDSEKEVIKELYENAIQILADDDRALPQVQFILPLLLRGIGIH 533
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
H G LPI K IE +FQ L+KV+F+TET + GINMPA+T V +SL K + +TS
Sbjct: 534 HGGLLPIIKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVVFTSLKKFDGLEKRLITSG 593
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QMAGRAGRRG+D+RG V+++ ++ KL LVSQF Y M+LNLL
Sbjct: 594 EYIQMAGRAGRRGLDDRGIVIIMLDSPLHWKDAEKLFVGEANRLVSQFHLGYNMILNLL 652
>gi|363421211|ref|ZP_09309300.1| dead/deah box helicase [Rhodococcus pyridinivorans AK37]
gi|359734946|gb|EHK83914.1| dead/deah box helicase [Rhodococcus pyridinivorans AK37]
Length = 918
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 190/535 (35%), Positives = 276/535 (51%), Gaps = 65/535 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A+ F +D FQ + A G SV+V APT +GKT++ E A + + FYTTP
Sbjct: 28 EFATGLGFPLDPFQIEACRALEGGHSVLVCAPTGAGKTVVGEFAVYLALQGGSKCFYTTP 87
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+ + G ++VGLLTGD +IN +A +++MTTE+LRNM+Y +S +
Sbjct: 88 IKALSNQKYADLCARHGRDSVGLLTGDQSINSDAPVVVMTTEVLRNMIY------ASSTA 141
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DEVH+L+D RG VWEE+I++ P++V++ LSATV+NA+E W+ + G
Sbjct: 142 LIGLTHVVMDEVHFLADRFRGAVWEEVILHLPEDVRLASLSATVSNAEEFGDWMTTVRGD 201
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
T ++ RP+PL + + + L D + + ++ P
Sbjct: 202 TTVVVDEVRPIPLHQHMMLGSRIYDLFDRR---------------ADTDTAP-------- 238
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSIN----AIRRSQVPQVIDTLWHLRSRDMLPAIW 446
+R+ D+ N + S + + S + ++ R + P + + L +LPAI
Sbjct: 239 --TRRRRDIVVNPELASAVRQRQSLSGMDRWGERGPRFRPPPRPEVIVRLDRDGLLPAIT 296
Query: 447 FIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG------- 497
F+F+R GCDAAVQ +L DE E +E+ + P E + G
Sbjct: 297 FVFSRAGCDAAVQQCLRSGLHLTDETEAAEIRRIVDEHTRDLPRGDLE--VLGYASWRTA 354
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
L +G+AAHHAG LP ++ +EELF RGLV+ VFATETLA GINMPART VL L K
Sbjct: 355 LERGIAAHHAGMLPAFRHTVEELFVRGLVRAVFATETLALGINMPARTVVLEKLVKFNGD 414
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
+LT E Q+ GRAGRRGID GH V++ P L PL S F SY
Sbjct: 415 THAELTPGEYTQLTGRAGRRGIDVEGHAVVLWQPGIEPAAVAGLASTRTFPLRSSFRPSY 474
Query: 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 672
M +NL+ V E +R L+E SF + ++ K
Sbjct: 475 NMAVNLIDAVGV-------------------ERSRALLEMSFAQFQADKSVVGLK 510
>gi|332823591|ref|XP_001160927.2| PREDICTED: helicase SKI2W isoform 3 [Pan troglodytes]
Length = 1246
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 275/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 269 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 323
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 324 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 381
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D RG
Sbjct: 382 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDAERGV 435
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 436 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 495
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 496 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 534
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 535 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 590
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 591 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 650
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 651 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 710
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 711 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 755
>gi|336376932|gb|EGO05267.1| hypothetical protein SERLA73DRAFT_68899 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1291
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 184/504 (36%), Positives = 267/504 (52%), Gaps = 38/504 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V E+A Y F +D FQ+ ++ G SV V+A TS+GKT++AE A + R YT
Sbjct: 322 VPEMAHEYPFELDTFQKEAVYHLEMGDSVFVAAHTSAGKTVVAEYAIALAEKHMTRAIYT 381
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+F++TF ++VG+LTGD IN EA L+MTTEILR+MLY+ ++
Sbjct: 382 SPIKALSNQKFRDFKQTFSSSSVGILTGDVQINPEASCLVMTTEILRSMLYKGADLIR-- 439
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D RG VWEE+II P V II LSATV N E A W+G+
Sbjct: 440 ----DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTK 495
Query: 329 GK-TELITSSRRPVPLTWYFSTKTALLPLLD-----------EKGKHMNRKL-------- 368
K +I++++RPVPL Y ++D + G+ + RK
Sbjct: 496 KKDIYVISTAQRPVPLEHYIYAGRETFKIVDANRRWISEGYKDAGEALKRKQDKAREAAG 555
Query: 369 --SLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 426
+ + + + + GG+ R ++ A NN G+ I+ +
Sbjct: 556 LPPVQRVGARGAAPRGGQRGGTPTRGGQRGA--TPNNRGAPPGRGGGPSRIIHTGADKNL 613
Query: 427 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRIL 485
+ L HL+ + +LP + F F+++ C+ L + +L E SE+ +A+ K L
Sbjct: 614 --YVHLLNHLQKKTLLPVVVFTFSKKKCEENAGTLTNADLCTSVEKSEIHVAIEKALSRL 671
Query: 486 YPDAVREPAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 541
+ P I L +G+ HH G LPI K +E LF RGLVK++FATET A G+NM
Sbjct: 672 KGTDKKLPQISRMRDLLSRGIGVHHGGILPIVKEVVEILFGRGLVKILFATETFAMGVNM 731
Query: 542 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 601
PAR V S + K + E QMAGRAGRRG+D G V++V + +
Sbjct: 732 PARCVVFSGIRKHDGKSFRDILPGEYTQMAGRAGRRGLDPTGTVIIVVNDELPDQTSIQH 791
Query: 602 LFAGVEP-LVSQFTASYGMVLNLL 624
+ G L SQF +Y M+LNLL
Sbjct: 792 MMLGTPAKLQSQFRLTYNMILNLL 815
>gi|313219204|emb|CBY16397.1| unnamed protein product [Oikopleura dioica]
Length = 605
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 189/499 (37%), Positives = 271/499 (54%), Gaps = 75/499 (15%)
Query: 143 GNEMIDVD---------ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEA 193
++ IDVD E A + F +D FQ+ ++ + SV V+A TS+GKT++AE
Sbjct: 4 ADKTIDVDTKPWSELLPEPAYKWPFELDYFQKRAVLCLEKHESVFVAAHTSAGKTVVAEY 63
Query: 194 AAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEI 253
A + + R+ YT+P+KALSNQKFR+FR TF D VGLLTGD I EA LIMTTEI
Sbjct: 64 AIALSAKHMTRVIYTSPIKALSNQKFRDFRATFQD--VGLLTGDCQIKPEAGCLIMTTEI 121
Query: 254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSAT 313
LR+MLY ++ D++ ++ DEVHY++D RG VWEE++I P V +I LSAT
Sbjct: 122 LRSMLYAGSDVIR------DLEWVIFDEVHYINDAERGVVWEEVLIMLPAHVGLILLSAT 175
Query: 314 VANADELAGWIGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 372
V N ++ A W+G+I + +TS+ +RPVPL Y T
Sbjct: 176 VPNIEQFASWVGRIKNRKIYVTSTLKRPVPLEHYLFT----------------------- 212
Query: 373 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 432
G S + + + + ++ G ++L++ + VID
Sbjct: 213 -------------GNSTKTSDQLYKIVDQTKRFLPTG-YKLAREA----------SVIDC 248
Query: 433 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI-LYPDAVR 491
L+ RD LPA+ F +R+ CD L NL E +E+ L +R L P +
Sbjct: 249 ---LKKRDGLPAVAFTLSRKRCDKNAAMLSGVNLTSPGEKNEIALFYRRCTSKLKPIDRK 305
Query: 492 EPAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
P + +GLL +G+A HH+G LPI K IE LF RGLVK++FATET A G+NMPAR+ +
Sbjct: 306 LPQVVHLEGLLERGIAVHHSGVLPILKETIELLFARGLVKLLFATETFAMGVNMPARSVL 365
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA--EECCKLLFAG 605
S K G L +E QMAGRAGRRG+D+ G V+LVQ + A ++ ++
Sbjct: 366 FDSNRKHDGRGMRDLIPSEYIQMAGRAGRRGLDSFGTVILVQRQQKCADQQDLINMMLGK 425
Query: 606 VEPLVSQFTASYGMVLNLL 624
PL+S+F +YGM+L++L
Sbjct: 426 AAPLISKFRLTYGMLLSIL 444
>gi|238880251|gb|EEQ43889.1| antiviral helicase SKI2 [Candida albicans WO-1]
Length = 1246
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 196/543 (36%), Positives = 286/543 (52%), Gaps = 83/543 (15%)
Query: 129 WQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKT 188
W V L +++++F E+ V +A + F +D FQ+ ++ +G SV V+A TS+GKT
Sbjct: 263 WAHVVDLDHKIEDF-QEL--VPNMARTWPFELDTFQKEAVFHLEQGDSVFVAAHTSAGKT 319
Query: 189 LIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILI 248
++AE A N + YT+P+KALSNQKFR+F+ETF D +VGL+TGD IN EA LI
Sbjct: 320 VVAEYAIAMAHRNMTKCIYTSPIKALSNQKFRDFKETFKDIDVGLITGDVQINPEANCLI 379
Query: 249 MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQII 308
MTTEILR++LY+ ++ DV+ ++ DEVHY++DI RG VWEE+II P V+ I
Sbjct: 380 MTTEILRSILYRGADLIR------DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPDHVKYI 433
Query: 309 CLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRK 367
LSATV N E A W+G+ K +I++ +RPVPL + S K L ++D NR+
Sbjct: 434 LLSATVPNTFEFANWVGRTKQKDIYVISTPKRPVPLEIFVSAKNQLFKVVD-----ANRR 488
Query: 368 LSLNYLQLSTSEVKPYKD--GGSRRRNSRKHADM-------------------------- 399
N E + +KD G ++N M
Sbjct: 489 FQEN-------EFRKHKDLLEGGGKKNELPSTTMGSGSRGGPGGTARGGNRGGRGGRGGQ 541
Query: 400 ----NSNNIVTS----FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
N+N S FG+ KN+ ID + +++S ++LPA+ F+F++
Sbjct: 542 GRGGNANRGNFSGPKRFGRDGPKKNTW-----------IDLVNYMKSNNLLPAVVFVFSK 590
Query: 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHH 506
+ C+ L + + E SE+ + + R RE P I + L +G+A HH
Sbjct: 591 KRCEEYADSLRSVDFNNAREKSEIHMFIDRAVGRLKKEDRELPQILKIREMLGRGIAVHH 650
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
G LPI K IE LF + LVKV+FATET A G+N+P RT + SS+ K L E
Sbjct: 651 GGLLPIVKECIEILFAKSLVKVLFATETFAMGLNLPTRTVIFSSMRKHDGRSFRNLLPGE 710
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQ-----TPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
QM+GRAGRRG+D G V+++ +P + E ++ L SQF +Y M+L
Sbjct: 711 FTQMSGRAGRRGLDKTGTVIVMAYDDPLSPTDFKE----VVLGTPTKLSSQFRLTYSMIL 766
Query: 622 NLL 624
NLL
Sbjct: 767 NLL 769
>gi|164660939|ref|XP_001731592.1| hypothetical protein MGL_0860 [Malassezia globosa CBS 7966]
gi|159105493|gb|EDP44378.1| hypothetical protein MGL_0860 [Malassezia globosa CBS 7966]
Length = 1224
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 188/524 (35%), Positives = 284/524 (54%), Gaps = 26/524 (4%)
Query: 116 DSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGS 175
DS+ P+ +E+ +W + + K+ N V ++A Y F +D FQ+ ++ R
Sbjct: 230 DSAARPT-QEKREWAH---MVDSSKKMSNFHELVPQMAHEYPFELDTFQKQAVYHLERND 285
Query: 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLT 235
SV V+A TS+GKT++AE A + + R YT+P+KALSNQKFREF++ FG NVG++T
Sbjct: 286 SVFVAAHTSAGKTVVAEYAIALAMKHMSRCIYTSPIKALSNQKFREFKQAFGAENVGIVT 345
Query: 236 GDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWE 295
GD IN EA LIMTTE+LR+MLY++ ++ DV+ ++ DEVHY++D RG VWE
Sbjct: 346 GDVKINPEAACLIMTTEVLRSMLYRAGELIR------DVEFVIFDEVHYVNDQERGVVWE 399
Query: 296 EIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALL 354
E+II P V + LSATV N E A W+G+ + +I++ +RPVPL + L
Sbjct: 400 EVIILLPAYVNTVLLSATVPNTQEFADWVGRTRRRDVYVISTPKRPVPLEHFLYAGKQLH 459
Query: 355 PLLDEKGKHMNRKL--SLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQ 412
++D G+ +++ + + + L Y G S +R R
Sbjct: 460 KIVDANGRFLSKGVNEAADALLSKKEREAAYTTGSSAQRGHRGGRGGGPAGRSGGSSGRG 519
Query: 413 LSKNSINAIRRSQVPQVID--TLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+S P + +LW L+ + +LP + F+F+++ C+ L + +
Sbjct: 520 GGNSSAGGGVGRPRPSMASDRSLWVNIVGLLKKQSLLPVVVFVFSKKKCEEYADSLPNTD 579
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEEL 520
L E SEV + ++R + + R+ P I + LL +G+ HH+G LPI K +E L
Sbjct: 580 LSTAKEKSEVHVLIERSLMRLKEEDRQVPQIARMRDLLSRGIGVHHSGLLPIVKELVELL 639
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
FQR LVKV+FATET A G+NMPAR+ V S + K + L E QMAGRAGRRG+D
Sbjct: 640 FQRTLVKVLFATETFAMGVNMPARSVVFSGVRKNDGNKFRNLLPGEYTQMAGRAGRRGLD 699
Query: 581 NRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G VV++ + +++ L SQF +Y M+LNLL
Sbjct: 700 KTG-VVIILSDNPELNPLNRMILGESTKLKSQFRITYCMILNLL 742
>gi|156120140|ref|NP_001095287.1| helicase SKI2W [Sus scrofa]
gi|148724903|emb|CAN87691.1| superkiller viralicidic activity 2-like (S. cerevisiae) [Sus
scrofa]
Length = 1246
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 193/489 (39%), Positives = 262/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I R SV V+A TS+GKT++AE A + R YT
Sbjct: 300 IPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 359
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 360 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 415
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 416 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 471
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 472 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGSFHTKGY------------- 518
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R+
Sbjct: 519 -YAAVEAKKERMSKHAQ--------TFGAKQPTNQGGPAQDRGVY---LSLLASLRAREQ 566
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 687 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 746
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 747 TYTMILNLL 755
>gi|170590328|ref|XP_001899924.1| symbol [Brugia malayi]
gi|158592556|gb|EDP31154.1| symbol, putative [Brugia malayi]
Length = 1052
Score = 304 bits (778), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 265/480 (55%), Gaps = 45/480 (9%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A +Y+F++D FQR +I SV+VSA TS+GKT++A A ++ +++R+ YT+P+K
Sbjct: 143 AKMYEFQLDAFQREAITCIDNSHSVLVSAHTSAGKTVVALYAIAMSLRDKQRVIYTSPIK 202
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE E FGD VGL+TGD+ +N +A ++MTTEILR+MLY+ ++
Sbjct: 203 ALSNQKYRELEEEFGD--VGLMTGDNTLNPDASCIVMTTEILRSMLYRGSEIMR------ 254
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A W+ +H +
Sbjct: 255 EVGWVIFDEIHYMRDKERGVVWEETIILLPDTVHYVFLSATIPNARQFADWVVYLHDQPV 314
Query: 332 ELITSSRRPVPLTW--YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
+I + RPVPL Y + L +++ +G K +
Sbjct: 315 HVIYTDYRPVPLQHFIYPXGGSGLYEVVNMQGIFREDKFT-------------------- 354
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
MN + V GQ +++ S P V++ + L+ RDM+P I F F
Sbjct: 355 -------EAMNVLSQVGDAGQGGINRGKKGGT--SGTPHVVNIIRTLKERDMIPVIIFSF 405
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVAA 504
+R+ C+A + + E E ++V E+ + +L + + P I LL+G+
Sbjct: 406 SRKECEAYATQMTSLDFNTEDEKAKVKEIFVNAISLLSDEDSKLPEIGRVLPLLLRGIGV 465
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LF GL+K +FATET A G+NMPART + +S K +TS
Sbjct: 466 HHSGLLPIVKEVIEILFGEGLIKTLFATETFAMGLNMPARTVLFTSARKFDGKDYRWITS 525
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG D+RG V+L+ G + +++ +PL SQF +Y MVLNLL
Sbjct: 526 GEYIQMSGRAGRRGKDDRGLVILMVDQQMGQDVAKQIIKGAPDPLNSQFRLTYNMVLNLL 585
>gi|403307800|ref|XP_003944371.1| PREDICTED: helicase SKI2W isoform 2 [Saimiri boliviensis
boliviensis]
Length = 1082
Score = 304 bits (778), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 275/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 105 VSTPEAPKPLPQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 159
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 160 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 217
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D RG
Sbjct: 218 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDAERGV 271
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 272 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 331
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 332 SPKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 370
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 371 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 426
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 427 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEML 486
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 487 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 546
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 547 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 591
>gi|410213924|gb|JAA04181.1| superkiller viralicidic activity 2-like [Pan troglodytes]
gi|410249634|gb|JAA12784.1| superkiller viralicidic activity 2-like [Pan troglodytes]
gi|410290134|gb|JAA23667.1| superkiller viralicidic activity 2-like [Pan troglodytes]
gi|410347543|gb|JAA40743.1| superkiller viralicidic activity 2-like [Pan troglodytes]
Length = 1246
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 275/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 269 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 323
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 324 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 381
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D RG
Sbjct: 382 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDAERGV 435
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 436 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 495
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 496 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 534
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 535 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 590
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 591 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 650
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 651 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 710
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 711 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 755
>gi|390604989|gb|EIN14380.1| antiviral helicase [Punctularia strigosozonata HHB-11173 SS5]
Length = 1256
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 189/527 (35%), Positives = 270/527 (51%), Gaps = 70/527 (13%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAV------------ 196
V E+A Y F +D FQ+ ++ G SV V+A TS+GKT++AE A
Sbjct: 270 VPEMAHQYPFELDTFQKQAVYHLEMGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRHFQP 329
Query: 197 ------ATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMT 250
A + Q R YT+P+KALSNQKFR+F++TF +VG+LTGD IN E L+MT
Sbjct: 330 LDLLQSAILIVQYRAIYTSPIKALSNQKFRDFKQTFSSQSVGILTGDVQINPEGNCLVMT 389
Query: 251 TEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 310
TEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P V II L
Sbjct: 390 TEILRSMLYKGADLIR------DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILL 443
Query: 311 SATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEK--------- 360
SATV N E A W+G+ K +I++++RPVPL Y + + +LD K
Sbjct: 444 SATVPNTKEFADWVGRTKRKDIYVISTAQRPVPLEHYLYSGREMHKVLDAKRNFLAQGYK 503
Query: 361 --GKHMNRK-------LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQ- 410
+ + RK L +Q + P + G N+++ A S G
Sbjct: 504 DAAEALRRKQDKEREAAGLGPVQRTGGRGAPSRGGQRGGANAQRGAPARGRGTAPSRGGP 563
Query: 411 -----HQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
HQ K+ + L HL+ + +LP + F F+++ C+ L + +
Sbjct: 564 PSRTFHQADKS-----------LYVHLLGHLKKKGLLPVVVFTFSKKRCEENAATLTNAD 612
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAIKG----LLKGVAAHHAGCLPIWKSFIEEL 520
L E SEV +A+++ + R+ P I L +G+ HH G LPI K +E L
Sbjct: 613 LCTAVEKSEVHIAIEKALSRLKGSDRKLPQIARMRDLLSRGIGVHHGGLLPIVKEVVELL 672
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVK++FATET A G+NMPAR V S + K ++ E QMAGRAGRRG+D
Sbjct: 673 FARGLVKILFATETFAMGVNMPARCVVFSGIRKHDGRSFREILPGEYTQMAGRAGRRGLD 732
Query: 581 NRGHVVLVQT---PYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V++ P +G ++ L SQF +Y M+LNLL
Sbjct: 733 ATGTVIVNANDDLPEQGI--LHHMMLGQPSKLQSQFRLTYNMILNLL 777
>gi|355719538|gb|AES06634.1| superkiller viralicidic activity 2-like protein [Mustela putorius
furo]
Length = 1245
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 193/489 (39%), Positives = 261/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I R SV V+A TS+GKT++AE A + R YT
Sbjct: 300 IPQPAFQWSFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 359
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 360 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 415
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 416 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 471
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 472 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY------------- 518
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 519 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 566
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLNSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 687 SAFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 746
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 747 TYTMILNLL 755
>gi|296197760|ref|XP_002746412.1| PREDICTED: helicase SKI2W isoform 1 [Callithrix jacchus]
Length = 1246
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 275/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 269 VSTPEAPKPLPQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 323
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 324 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 381
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D RG
Sbjct: 382 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDAERGV 435
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 436 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 495
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 496 SPKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 534
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 535 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 590
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 591 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEML 650
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 651 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 710
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 711 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 755
>gi|426352517|ref|XP_004043758.1| PREDICTED: helicase SKI2W isoform 1 [Gorilla gorilla gorilla]
Length = 1246
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 275/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 269 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 323
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 324 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 381
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D RG
Sbjct: 382 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDAERGV 435
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 436 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 495
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 496 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 534
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 535 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 590
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 591 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 650
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 651 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 710
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 711 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 755
>gi|296454181|ref|YP_003661324.1| DEAD/DEAH box helicase domain-containing protein [Bifidobacterium
longum subsp. longum JDM301]
gi|296183612|gb|ADH00494.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum
subsp. longum JDM301]
Length = 863
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 199/529 (37%), Positives = 283/529 (53%), Gaps = 66/529 (12%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + +A GS+V+V+APT +GKT++A+ A + FYTTP+KALSNQ
Sbjct: 45 FELDDFQTEANDALEAGSNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKALSNQ 104
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + + +G + VGLLTGD++IN EA I++MTTE+LRNMLY+ +++ + +
Sbjct: 105 KYHDLVDVYGPDKVGLLTGDTSINSEADIVVMTTEVLRNMLYERSTTLNA------LRYV 158
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
+LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 159 ILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVISE 218
Query: 338 RRPVPLTWYF------STKTALLPLLDEKGK-HMNRKLSLNYL-QLSTSEVKPYKDGGSR 389
RPVPL + T+ +L L G KL+ + +L + K + G
Sbjct: 219 HRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQLDRKAARRRGEE 278
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R + RK + + K + RR V+D L L MLP I+FIF
Sbjct: 279 RPDKRK---GFGRGRGGKGAKDRAPKAERHTPRRW---AVVDELNFL---GMLPGIYFIF 329
Query: 450 NRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAVREPAIKG 497
+R GCD AV+ + L DE EM E +L + + L R
Sbjct: 330 SRNGCDQAVEQCINAGLELTTDEEVTRIRRIVDEMVEGQLTQEDLKALQFSKFR----FA 385
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+ L K +
Sbjct: 386 LEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEKLEKFDGT 445
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGVEPLVSQF 613
G + LT E Q+ GRAGRRGID GH ++V P A K ++ PL S F
Sbjct: 446 GHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAASLSSKRVY----PLHSSF 501
Query: 614 TASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
++ M +NLL N SD E AR ++QSF +
Sbjct: 502 RPTFNMAVNLL---------NSSD----------YETARVTLDQSFAQW 531
>gi|403307798|ref|XP_003944370.1| PREDICTED: helicase SKI2W isoform 1 [Saimiri boliviensis
boliviensis]
Length = 1246
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 275/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 269 VSTPEAPKPLPQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 323
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 324 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 381
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D RG
Sbjct: 382 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDAERGV 435
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 436 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 495
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 496 SPKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 534
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 535 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 590
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 591 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEML 650
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 651 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 710
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 711 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 755
>gi|397523107|ref|XP_003831583.1| PREDICTED: LOW QUALITY PROTEIN: helicase SKI2W [Pan paniscus]
Length = 1246
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 275/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 269 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 323
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 324 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 381
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D RG
Sbjct: 382 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDAERGV 435
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 436 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 495
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 496 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 534
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 535 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 590
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 591 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 650
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 651 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 710
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 711 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 755
>gi|432881492|ref|XP_004073809.1| PREDICTED: helicase SKI2W-like isoform 1 [Oryzias latipes]
Length = 1246
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 204/524 (38%), Positives = 278/524 (53%), Gaps = 55/524 (10%)
Query: 117 SSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSS 176
S P S E+ KW + + +F + A + F +D FQ+ +I S
Sbjct: 279 SKPTESPEEKKKWAIPVDITSPCDDFYKR---IPNPAFKWPFELDVFQKQAILRLEAHDS 335
Query: 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236
V V+A TS+GKT++AE A + + R YT+P+KALSNQKFR+F+ TF D VGLLTG
Sbjct: 336 VFVAAHTSAGKTVVAEYAIALSQKHMTRTIYTSPIKALSNQKFRDFKTTFKD--VGLLTG 393
Query: 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEE 296
D ++ E+ LIMTTEILR+MLY ++ D++ ++ DEVHY++D RG VWEE
Sbjct: 394 DVQLSPESACLIMTTEILRSMLYNGSEVIR------DLEWVIFDEVHYINDAERGVVWEE 447
Query: 297 IIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF----STKT 351
++I P V II LSATV NA E + WIG+I K +I++ +RPVPL + STKT
Sbjct: 448 VLIMLPDHVSIILLSATVPNALEFSEWIGRIKKKHIYVISTMKRPVPLEHHLYTGNSTKT 507
Query: 352 A--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFG 409
+ L+D G + + Y +++ S KHA +FG
Sbjct: 508 QKEMFLLVDAAGNFLTKGY--------------YAAVDAKKERSSKHAQ--------TFG 545
Query: 410 QHQLSKNSINAIRRSQVPQVIDTLWH-LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLD 468
S+N+ + RS V L H L R P + F F+R CD + LE +L
Sbjct: 546 AKNTSQNTTASQDRS----VWLALLHFLSQRQQTPVVAFTFSRARCDDNARSLESMDLTT 601
Query: 469 ECEMSEV----ELALKRFRILYPDAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQR 523
E +E+ + +L R R + ++ LLK GVA HH+G LPI K IE LF R
Sbjct: 602 SVEKAEIHSFFQKSLSRLRGGDRQLPQILLMRDLLKRGVAVHHSGILPILKEVIEMLFSR 661
Query: 524 GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 583
GLVKV+FATET A G+NMPART V S+ K +G L E QMAGRAGRRG+D G
Sbjct: 662 GLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATG 721
Query: 584 HVVLVQTPYEGAEECCKL---LFAGVEPLVSQFTASYGMVLNLL 624
V+++ G E L + L SQF +Y M+LNLL
Sbjct: 722 TVIILCK--AGVHEMADLHAMMMGKPTILQSQFRLTYTMILNLL 763
>gi|340377094|ref|XP_003387065.1| PREDICTED: helicase SKI2W [Amphimedon queenslandica]
Length = 1177
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 198/569 (34%), Positives = 304/569 (53%), Gaps = 48/569 (8%)
Query: 71 DEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVSSD--------SSPAPS 122
DE + D D+ ++D + + +G+ + E Q+ DE + D S+ P+
Sbjct: 166 DELFNVTDIDLQMEEDPQGNETE---TGDTNQEEQEQIDELVMIPDPVSGGLETSARTPN 222
Query: 123 WREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAP 182
E W +L ++ +F + + +A + F +D FQ+ +I +V VSA
Sbjct: 223 KNNE-AWAIKVELHEDIDDFYKK---IPSMAHTWPFELDNFQKQAILRLESHENVFVSAH 278
Query: 183 TSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINR 242
TS+GKT++AE A +++++ R YT+P+KALSNQKF +FR TFG++ +GL+TGD IN+
Sbjct: 279 TSAGKTVVAEYAIALSLSHKTRTIYTSPIKALSNQKFHDFRGTFGESAIGLVTGDVQINK 338
Query: 243 EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP 302
E LIMTTEILR+MLY ++ DV+ +V DEVHY++D RG VWEE++I P
Sbjct: 339 EGPCLIMTTEILRSMLYHGSDVIR------DVEWVVFDEVHYINDTERGVVWEEVLIMLP 392
Query: 303 KEVQIICLSATVANADELAGWIGQI-HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKG 361
V++I LSATV N E A W+G+ K ++++ +RPVPL Y T +
Sbjct: 393 DHVRLILLSATVPNTMEFADWVGRTKQRKIHVVSTLQRPVPLQHYLYTGNS--------- 443
Query: 362 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 421
KH +L + + V YK +R S D S + G+ QL+ +
Sbjct: 444 KHTQEELFMIVGEDKKFIVPGYKQALEAKRKS----DEKSGPKGGAKGRGQLTTAQERNV 499
Query: 422 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR 481
+S V L+ +D LP + F F+++ CD L + +L + +++ K+
Sbjct: 500 WQSLVNL-------LKKKDNLPLVAFTFSKKRCDDNANSLTNLDLTTREDKHKIDSFFKK 552
Query: 482 FRILYPDAVRE-PAI---KGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA 536
+ + RE P + K LLK G+ HH+G LPI K IE LF +GLVK++FATET A
Sbjct: 553 SVSILKGSDRELPQVVWMKDLLKRGIGVHHSGILPIIKEIIEMLFGQGLVKLLFATETFA 612
Query: 537 AGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGA 595
G+NMPART ++ K + +L E QMAGRAGRRG+D G V +L +T +
Sbjct: 613 MGVNMPARTVAFDAIRKHDGNRNRELYPGEYVQMAGRAGRRGLDTTGTVIILCKTDVPES 672
Query: 596 EECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+ K++ L SQF +Y M++N+L
Sbjct: 673 GDLVKMILGSPGVLESQFRLTYSMLMNIL 701
>gi|296197764|ref|XP_002746413.1| PREDICTED: helicase SKI2W isoform 2 [Callithrix jacchus]
Length = 1082
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 275/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 105 VSTPEAPKPLPQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 159
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 160 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 217
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D RG
Sbjct: 218 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDAERGV 271
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 272 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 331
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 332 SPKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 370
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 371 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 426
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 427 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEML 486
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 487 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 546
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 547 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 591
>gi|162138264|gb|ABX82836.1| putative superkiller viralicidic activity 2 protein [Sus scrofa]
Length = 1246
Score = 303 bits (776), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 193/489 (39%), Positives = 262/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I R SV V+A TS+GKT++AE A + R YT
Sbjct: 300 IPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 359
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 360 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 415
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 416 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 471
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 472 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGSFHTKGY------------- 518
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R+
Sbjct: 519 -YAAVEAKKERMSKHAQ--------TFGAKQPTNQGGPAQDRGVY---LSLLASLRAREQ 566
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 687 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 746
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 747 TYTMILNLL 755
>gi|422486206|ref|ZP_16562562.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
gi|327443881|gb|EGE90535.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
Length = 917
Score = 303 bits (776), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 190/524 (36%), Positives = 272/524 (51%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVARHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ +
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEGR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPVPL + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAI 445
R R + + FG + R Q I + L ++LPAI
Sbjct: 235 RRPRGRSGKGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAI 294
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGL 498
F+F+R GCDAAV L + +L+ + +L A +R L + R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTSGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|405981020|ref|ZP_11039349.1| hypothetical protein HMPREF9240_00355 [Actinomyces neuii BVS029A5]
gi|404393039|gb|EJZ88096.1| hypothetical protein HMPREF9240_00355 [Actinomyces neuii BVS029A5]
Length = 896
Score = 303 bits (776), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 216/601 (35%), Positives = 305/601 (50%), Gaps = 100/601 (16%)
Query: 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216
+F +D FQ S+ EA G V+V+APT +GKT++ E ++ +R FYTTP+KALSN
Sbjct: 47 NFELDDFQVSACEAVEAGRPVLVAAPTGAGKTIVGEFGIERALSLGKRAFYTTPIKALSN 106
Query: 217 QKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276
QKF +F +G + VGLLTGD+ +N +A +++MTTE+LRNMLYQ L + V
Sbjct: 107 QKFADFCRKWGRDRVGLLTGDTVVNGDADVVVMTTEVLRNMLYQ------RHRALTGLGV 160
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
+VLDEVHYL+D RG VWEE+I++ P+EVQII +SATV+NA+E W+ + G ++ S
Sbjct: 161 VVLDEVHYLADRFRGPVWEEVILHTPEEVQIISISATVSNAEEFGKWLEEARGDCAVVVS 220
Query: 337 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 396
+RP+PL + L L Y+ G +R
Sbjct: 221 EQRPIPLKQHMLVGDRLYDL--------------------------YRRGSNR------- 247
Query: 397 ADMNSNNIVTSFGQHQLSKNSINAIRRS--QVPQVI--DTLWHLRSRDMLPAIWFIFNRR 452
N+ +T +A+ RS + P+V D + L D+LPAI+FIF+R
Sbjct: 248 ----PNSALT------------DAVARSLERRPRVFPEDNMLTLAKHDLLPAIFFIFSRA 291
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA-----------IKGLLKG 501
GCD AV Y C L + ++ + + +I+ R PA + LL G
Sbjct: 292 GCDRAVSY---C-LRAKISITTPDQRRRLAQIVEDVEDRIPAEDHAVVGLDKWARALLSG 347
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
AAHH G LP K +E F GL+ VFATETLA GINMPAR+ V++ L K S +
Sbjct: 348 YAAHHTGLLPALKEAVELAFSEGLLGAVFATETLALGINMPARSVVITQLRKWNGSDHVM 407
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE-GAEECCKLLFAG--VEPLVSQFTASYG 618
LT + Q+ GRAGRRGID GH V+ PY+ GAE A PL+S F +Y
Sbjct: 408 LTPGQYTQLTGRAGRRGIDVVGHAVV---PYQIGAEPAIVASLASKRTYPLISAFRPTYS 464
Query: 619 MVLNLL------AGAKVMH--LSNESDDMKALQ---AGRSLEEARKLVEQSFGNYVGSNV 667
M + LL A M + D+KA + RS +E E G
Sbjct: 465 MAVGLLEHMDLEAAKATMERSFAQFQSDLKARKNALKARSWKEQMDAAEGDLHCSRGDFK 524
Query: 668 MLA-AKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTE 726
A A+ EL + QK ++ + A ++R+++ E ++A +LK KRFR
Sbjct: 525 EYALARQELSRAQKS----AAKALNRARHARTRQVILELDRGDVA----QLKIGKRFRAA 576
Query: 727 L 727
L
Sbjct: 577 L 577
>gi|322689194|ref|YP_004208928.1| helicase [Bifidobacterium longum subsp. infantis 157F]
gi|320460530|dbj|BAJ71150.1| putative helicase [Bifidobacterium longum subsp. infantis 157F]
Length = 863
Score = 303 bits (776), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 196/536 (36%), Positives = 282/536 (52%), Gaps = 80/536 (14%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + +A GS+V+V+APT +GKT++A+ A + FYTTP+KALSNQ
Sbjct: 45 FELDDFQTEANDALEAGSNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKALSNQ 104
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + + +G + VGLLTGD++IN EA I++MTTE+LRNMLY+ +++ + +
Sbjct: 105 KYHDLVDVYGPDKVGLLTGDTSINSEADIVVMTTEVLRNMLYERSTTLNA------LRYV 158
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
+LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 159 ILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVISE 218
Query: 338 RRPVPLTWYF------STKTALLPLL-----DEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
RPVPL + T+ +L L E+ +N +L QL
Sbjct: 219 HRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQATKLNAELINRLDQLD---------- 268
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR-RSQVPQ---VIDTLWHLRSRDML 442
R+ +R+ + + +A + P+ V+D L L ML
Sbjct: 269 ---RKAARRRGEERPDKRKGFGRGRGGKGAKGHAPKAERHTPRRWAVVDELNFL---GML 322
Query: 443 PAIWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAV 490
P I+FIF+R GCD AV+ + L DE EM E +L + + L
Sbjct: 323 PGIYFIFSRNGCDQAVEQCINAGLELTTDEEVTKIRRIVDEMVEGQLTQEDLKALQFSKF 382
Query: 491 REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
R L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+
Sbjct: 383 R----FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEK 438
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGV 606
L K +G + LT E Q+ GRAGRRGID GH ++V P A K ++
Sbjct: 439 LEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY--- 495
Query: 607 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F ++ M +NLL N SD E AR ++QSF +
Sbjct: 496 -PLHSSFRPTFNMAVNLL---------NSSD----------YETARVTLDQSFAQW 531
>gi|422579216|ref|ZP_16654739.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
gi|314914924|gb|EFS78755.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
Length = 917
Score = 303 bits (776), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 190/524 (36%), Positives = 272/524 (51%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVTRHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ +
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEGR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPVPL + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRVVVSERRPVPLVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAI 445
R R + + FG + R Q I + L ++LPAI
Sbjct: 235 RRPRGRSGKGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAI 294
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGL 498
F+F+R GCDAAV L + +L+ + +L A +R L + R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 48.1 bits (113), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|298245680|ref|ZP_06969486.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
44963]
gi|297553161|gb|EFH87026.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
44963]
Length = 882
Score = 303 bits (776), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 202/545 (37%), Positives = 281/545 (51%), Gaps = 61/545 (11%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+++ + Y F ID FQ S+ L G SV+V+APT +GKTL+AE A +RI YT
Sbjct: 6 IEDFVARYPFPIDDFQLESVSHLLDGRSVMVAAPTGTGKTLVAEFAVWLAQKRGQRIIYT 65
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG--MVS 266
TPLKALSNQK+R+ RE +G +NVGL+TGD + A I+IMTTE+ RNML + G V+
Sbjct: 66 TPLKALSNQKYRDMRELYGYDNVGLVTGDIVEHSHASIVIMTTEVYRNMLLEDGGERFVN 125
Query: 267 SE----SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAG 322
E S L DV +V DE+HYLSD RG VWEE II PK VQ++ LSATV+NA++LA
Sbjct: 126 GERLDASELRDVGFVVFDELHYLSDFDRGPVWEEAIICSPKHVQLVGLSATVSNAEDLAS 185
Query: 323 WIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKG----------------KHMNR 366
WI ++H L+ +R VPL Y+ + + D +G + MNR
Sbjct: 186 WISRVHRPISLVFHEQRAVPLEHYYYYGDKIHLVQDAEGNRVNRFPRVGGEAKIAQMMNR 245
Query: 367 KLSLNYLQLSTSEV------KPYKDGGSRRRNSR-------KHADMNSNNIVTSFGQHQL 413
+ Y EV + + D RR R + A+ + QH
Sbjct: 246 RRIYVYDNDEEGEVDEEAVTEEFWDKQENRRKGRVPNREQRRRAERRGKSSTARAQQHSS 305
Query: 414 SKNSINA----------------IRRSQ-----VPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+ ++ +A +R Q P+ +TL LR+ DMLP ++F+ RR
Sbjct: 306 APSTASAHAAPNTEEGSEAEERPVRPRQRQFFKAPEPGETLTALRNADMLPCLYFLPGRR 365
Query: 453 GCDAAVQY--LEDCNLLDECEMSEVELALKRFRILYPDAVREPAI---KGLLKGVAAHHA 507
+ A L +E E+ + R+ D + + L +G+A HHA
Sbjct: 366 VVEEAATSASLHSFTTPEEEAFIREEIGIWLDRLPPEDRNLQQVLSLTNMLPRGIAFHHA 425
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
G LP K +E LF +G ++ VFAT+TLA G+NMPART V+ SLSK LT NE
Sbjct: 426 GLLPGLKVLVETLFAQGHLRAVFATDTLALGVNMPARTVVVGSLSKFDGQEMRLLTPNEY 485
Query: 568 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 627
Q+ GRAGRRG+D RG V+ +P+E E+ + + + P+ S F Y VLNL
Sbjct: 486 RQLTGRAGRRGMDVRGSAVIPYSPWEPFEDAFQRITGEMLPVTSSFVIRYNSVLNLWRPG 545
Query: 628 KVMHL 632
V HL
Sbjct: 546 DVQHL 550
Score = 43.9 bits (102), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 1020 LWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 1079
+ + M++R + + P ++A +C+ K RL N + ++ VL
Sbjct: 656 MLVEMIMRG-VFDGMSPNEVAEICSWFTFSNDK-RLHNRNVLASRLARVRRDLYQVLQHV 713
Query: 1080 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 1139
++E+ G+ + +F G+ AW+ G++ ++ L +GD+ LL +TIDL
Sbjct: 714 HG----IEERAGINFSPSIQPEFHGVAFAWSRGMSLNALLNRIELAEGDILMLLNQTIDL 769
Query: 1140 LAQI 1143
L Q+
Sbjct: 770 LQQV 773
>gi|133930973|ref|NP_502084.2| Protein SKIH-2 [Caenorhabditis elegans]
gi|115530064|emb|CAA92767.2| Protein SKIH-2 [Caenorhabditis elegans]
Length = 1266
Score = 303 bits (776), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 187/491 (38%), Positives = 271/491 (55%), Gaps = 35/491 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V +A Y F +D FQ+SS+ RG S+ V+A TS+GKT++AE A A++ R YT
Sbjct: 282 VPTMARKYPFSLDPFQQSSVLCMERGESLFVAAHTSAGKTVVAEYAIALCQAHKTRAVYT 341
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+F++ FGD VGL+TGD ++ EA LIMTTEILR+MLY ++
Sbjct: 342 SPIKALSNQKFRDFKQIFGD--VGLVTGDIQLHPEAACLIMTTEILRSMLYNGSEVIR-- 397
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ +V DEVHY+++ RG VWEE++I P V+I+ LSATV N E A W+G+I
Sbjct: 398 ----DLEWVVFDEVHYINNEERGHVWEEVLIMLPAHVKIVMLSATVPNCVEFADWVGRIK 453
Query: 329 G-KTELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
K +I++ RRPVPL + T+ L ++D G+ + + Y S+ K
Sbjct: 454 NRKINVISTDRRPVPLEHFLYTGQDGKTQKDLFKIIDRSGQFILK----GYNDAKDSKAK 509
Query: 382 PY-KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 440
Y K+ G++ KN N ++ + +++ D
Sbjct: 510 IYEKEKAGGAGGRGTQRGGGRGGGGNGGGRNWPGKNDKNI--------YLNLINYMKCSD 561
Query: 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAVREPAIK 496
LP + F+F+R+ CD Q L NL E E V L ++R + + + ++
Sbjct: 562 QLPMVVFVFSRKRCDENAQMLASMNLTTEVEKQHVRLFFSQCVQRLKGSDKELPQVLTMR 621
Query: 497 GL-LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
L L+G A HH+G LPI K +E LFQ+G VK++FATET A G+NMPAR V S+ K
Sbjct: 622 DLCLRGFAVHHSGILPILKEVVELLFQKGYVKILFATETFAMGVNMPARCVVFDSIMKHD 681
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAG-VEPLVSQF 613
+ R L E QMAGRAGRRG+D G V+++ + + K L +G L S+F
Sbjct: 682 GTERRMLNPGEYTQMAGRAGRRGLDLTGTVIIICKDSTVPQPDVLKNLISGQALRLESKF 741
Query: 614 TASYGMVLNLL 624
+Y M+LNLL
Sbjct: 742 RVTYSMILNLL 752
>gi|54025131|ref|YP_119373.1| ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
gi|54016639|dbj|BAD58009.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
Length = 899
Score = 303 bits (776), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 194/516 (37%), Positives = 263/516 (50%), Gaps = 63/516 (12%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQR + +A G V+V APT +GKT++ E A + + + FYTTP+KALSNQ
Sbjct: 20 FDLDPFQREACQALEAGHGVLVCAPTGAGKTVVGEFAVHLALVSGGKCFYTTPIKALSNQ 79
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
KF + +G +VGLLTGD +IN +A +++MTTE+LRNMLY +S L + +
Sbjct: 80 KFADLTRRYGRASVGLLTGDQSINPDAPVVVMTTEVLRNMLY------ASSDALRGLSYV 133
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
V+DEVHYL+D RG VWEE+I++ P +V+++ LSATV+NA+E W+ + G T ++
Sbjct: 134 VMDEVHYLADRFRGAVWEEVILHLPADVRLVSLSATVSNAEEFGAWMETVRGDTAVVVDE 193
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RPVPL + + L D K + + + R R+ A
Sbjct: 194 TRPVPLWQHVMVGRRMFDLFDTKSSDQKVIVDEDLV---------------RYIRHREQA 238
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAA 457
D + +G + R P+V L L +LPAI FIF+R GCD A
Sbjct: 239 DR-----INGWGGPRGRGGPRRDFRPLPRPEV---LARLDEEGLLPAITFIFSRAGCDGA 290
Query: 458 VQYL----------EDCNLLDE-CEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 506
+ ED + +D E EL +L RE L +G+AAHH
Sbjct: 291 LAQCLRSRLDLSRPEDADEIDAIIEKHTGELPKSDLEVLGYWEWRE----ALHRGLAAHH 346
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
AG LP ++ +EELF RGLV+ VFATETLA GINMPART VL L K +LT E
Sbjct: 347 AGMLPAFRHTVEELFVRGLVRAVFATETLALGINMPARTVVLERLVKFNGESHAELTPGE 406
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
Q+ GRAGRRGID GH V++ P L PL S F Y M +NL+
Sbjct: 407 YTQLTGRAGRRGIDVEGHAVVLWQPEVDTSAVAGLASTRTYPLRSSFRPGYNMSINLI-- 464
Query: 627 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
D M A EAR L+E+SF +
Sbjct: 465 ----------DRMGA-------AEARALLERSFAQF 483
>gi|389584791|dbj|GAB67523.1| ATP dependent RNA helicase [Plasmodium cynomolgi strain B]
Length = 1401
Score = 303 bits (775), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 259/480 (53%), Gaps = 40/480 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ+ SIE R SV+VSA TS+GKT+IAE A + +++R+ YT+P+K
Sbjct: 245 ARTYKFELDTFQKKSIECLERNESVLVSAHTSAGKTVIAEYAIALGLRDKQRVIYTSPIK 304
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+R+ E F D VGL+TGD +IN +A I++MTTEILR+MLY+ +
Sbjct: 305 ALSNQKYRDLSEEFKD--VGLITGDISINPDASIIVMTTEILRSMLYRGSSLTK------ 356
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
+V ++ DE+HY+ D RG +WEE II P V+ I LSAT+ N + A W+ I +
Sbjct: 357 EVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIKSQAC 416
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y ++ ++ + DE N+ N + + +K
Sbjct: 417 HIVYTDYRPTPLQHYIYPTSSESVFLICDE-----NKDFKKNNFIKAVNAIK-------- 463
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
N ++ GQHQ + N + V + + SR+ P I F F
Sbjct: 464 -----------EKNNMSEDGQHQNGNSKHNRRAKKNVYDIEKIVQMCHSRNYTPLIIFAF 512
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVAA 504
+++ C+ + +L D+ E + EL +IL D P ++ LL+G+
Sbjct: 513 SKKECEINATTMHKVDLTDDTEKEVIKELYENAIQILADDDRALPQVQFILPLLLRGIGI 572
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH G LPI K IE +FQ L+KV+F+TET + GINMPA+T V +SL K + +TS
Sbjct: 573 HHGGLLPIIKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVVFTSLKKFDGVEKRLITS 632
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QMAGRAGRRG+D+RG V+++ E KL LVSQF Y M+LNLL
Sbjct: 633 GEYIQMAGRAGRRGLDDRGIVIIMLDSPLHWREAEKLFVGEANRLVSQFHLGYNMILNLL 692
>gi|73972333|ref|XP_538841.2| PREDICTED: helicase SKI2W [Canis lupus familiaris]
Length = 1246
Score = 303 bits (775), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 192/482 (39%), Positives = 258/482 (53%), Gaps = 46/482 (9%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F D FQ+ +I R SV V+A TS+GKT++AE A + R YT+P+KALS
Sbjct: 307 WSFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS 366
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++ D++
Sbjct: 367 NQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLE 418
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ + +I
Sbjct: 419 WVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVI 478
Query: 335 TSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ RPVPL Y T+ L LLD +G + Y +
Sbjct: 479 STVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAAVEA 524
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
++ KHA +FG Q + A R + L LR+R LP + F
Sbjct: 525 KKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFT 573
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVA 503
F+R CD L +L E SE+ L L+R + R+ P + + L +G+
Sbjct: 574 FSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHRGLG 633
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S L
Sbjct: 634 VHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLL 693
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M+LN
Sbjct: 694 PGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILN 753
Query: 623 LL 624
LL
Sbjct: 754 LL 755
>gi|404214977|ref|YP_006669172.1| Superfamily II RNA helicase [Gordonia sp. KTR9]
gi|403645776|gb|AFR49016.1| Superfamily II RNA helicase [Gordonia sp. KTR9]
Length = 904
Score = 302 bits (774), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 204/599 (34%), Positives = 303/599 (50%), Gaps = 72/599 (12%)
Query: 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236
++V APT +GKT++ E A +A + FYTTP+KALSNQK+ + G +VGLLTG
Sbjct: 1 MLVCAPTGAGKTIVGEFAVHLALAGGTKCFYTTPIKALSNQKYNDLVAVHGAESVGLLTG 60
Query: 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWE 295
DS+IN +A +++MTTE++RNM+Y +ES D + +V+DEVH+L+D RG VWE
Sbjct: 61 DSSINPDAPVVVMTTEVVRNMIY-------AESRALDGLSHVVMDEVHFLADRFRGAVWE 113
Query: 296 EIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLP 355
E+I++ V+++ LSATV+NA+E WI + G T +I RPVPL+ + L
Sbjct: 114 EVILHLEPSVRVVSLSATVSNAEEFGDWIQTVRGDTSVIVDEHRPVPLSQHMLVGQRLFD 173
Query: 356 LLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSK 415
L D ++ P + G+R R + + + I+ + + + S+
Sbjct: 174 LFDP------------------ADTGPARKAGTRPRVNPELKRQIRHRILMADDERESSR 215
Query: 416 NSINAIRRSQVPQVI-------DTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNL 466
+ + L +LPAI FIF+R GCDAA+ Q L +L
Sbjct: 216 GRGRGRGSGPRRDGRGPALSRPNLVTRLDREGLLPAIGFIFSRVGCDAALAQCLRSGISL 275
Query: 467 LDECEMSEVELALKRFRI-LYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELF 521
L E+ EV+ + R L P + + +GL +G+A+HHAG LP ++ +EELF
Sbjct: 276 LTPAEIGEVDAIVDRHLTELSPTDLDVLGVHEWREGLRRGLASHHAGMLPTFRHTVEELF 335
Query: 522 QRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDN 581
RGLV++VFATETLA GINMPAR+ VL L K + LT E Q+ GRAGRRGID
Sbjct: 336 VRGLVRMVFATETLALGINMPARSVVLERLVKYNGEAHVDLTPGEFTQLTGRAGRRGIDV 395
Query: 582 RGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKA 641
GH V+V TP EE L A PL S F+ Y M +NLL
Sbjct: 396 EGHAVVVWTPEVVPEEVAGLAGARTFPLRSSFSPEYNMAVNLL----------------- 438
Query: 642 LQAGR-SLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDR---- 696
GR L+ AR+L+ +SF + ++ +L + Q+ L E++ A R
Sbjct: 439 ---GRLGLDGARELLHRSFAQFQADRSVVGQARKLDEAQRALRKLDGELARTAQARGLEP 495
Query: 697 ----KSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHL 751
A + L+E++++ +R +L+ R A+ L + GH+
Sbjct: 496 AEAEADSEEEPYAGFLGYVTLREDIRSRER---DLKFRRRTDTHDAITADLAALKRGHV 551
Score = 44.3 bits (103), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 17/177 (9%)
Query: 1000 NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIK-----VR 1054
+T ++ G+ I E++L + +R + DL LAAV A+LV E + V
Sbjct: 727 HTMLVTDSGKLLGRIYSESDLVVTECIRAGVWDDLSAPDLAAVVAALVYESRRDSYSGVD 786
Query: 1055 LWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLT 1114
+SS+ + + S ++++H V D+ FS V WASG +
Sbjct: 787 ALPGSSSMRAAMAATVGIW-------SRVTAVEQRHRVSPTREPDTGFSVAVATWASGRS 839
Query: 1115 WREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
E ++ L GD R R+ +DLL QI D RL A A + R
Sbjct: 840 LGEALLLAGERGQLLSPGDFVRWNRQVVDLLEQIRLGVGSDTRLGGTARAAVKAIRR 896
>gi|410958798|ref|XP_003986001.1| PREDICTED: helicase SKI2W [Felis catus]
Length = 1246
Score = 302 bits (774), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 193/489 (39%), Positives = 261/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I R SV V+A TS+GKT++AE A + R YT
Sbjct: 300 IPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 359
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 360 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 415
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 416 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 471
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 472 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY------------- 518
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 519 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 566
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 687 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 746
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 747 TYTMILNLL 755
>gi|84496432|ref|ZP_00995286.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
gi|84383200|gb|EAP99081.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
Length = 956
Score = 302 bits (774), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 195/551 (35%), Positives = 275/551 (49%), Gaps = 75/551 (13%)
Query: 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216
+F +D FQ EA RG V+V+APT +GKT++ E A +A R+ FYTTP+KALSN
Sbjct: 20 NFPLDDFQVQGCEAVERGQGVLVAAPTGAGKTIVGEFAVHMALATGRKAFYTTPIKALSN 79
Query: 217 QKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276
QK+ + G + VGLLTGDS++N EA +++MTTE+LRNM+Y + S L +
Sbjct: 80 QKYHDLVAVHGVDKVGLLTGDSSVNGEAPVVVMTTEVLRNMVY------AGSSTLQGLGF 133
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
+V+DEVHYL+D RG VWEE+II+ P+ VQ+I LSATV+NA+E W+ ++ G ++ S
Sbjct: 134 VVMDEVHYLADRFRGAVWEEVIIHLPESVQVISLSATVSNAEEFGDWLAEVRGNHAVVVS 193
Query: 337 SRRPVPLTWYFSTKTALLPLLDEK-----GKHMNRKLSLNYLQLSTSEVKPYKDG---GS 388
RPVPL + ++ L E + ++S + +Q + DG GS
Sbjct: 194 EHRPVPLWQHMLVGNSMFDLFVEGTSEPDADGASARVSPDLIQAIRGAEQQRADGWVRGS 253
Query: 389 RR-------------------------RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR 423
R R+ + + V+ + + R
Sbjct: 254 TRDKGRGPERPRDQGRDGGRGGGRGVSRDHGRGPGRGGSVAVSGASAGRADRGFTRGARP 313
Query: 424 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVE----- 476
+ + L +LPAI FIF+R GC+ AV L D L+ + E ++
Sbjct: 314 GGGATRAEVIAQLDRDGLLPAITFIFSRMGCEGAVGQLLSSDTRLIPQREGEQIRRHVEE 373
Query: 477 ----LALKRFRIL-YPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 531
LA + IL Y D V +GL +G A HHAG LP+++ +EELF G ++ VFA
Sbjct: 374 RMGSLAEEDLGILGYYDFV-----EGLSRGFACHHAGMLPLFREIVEELFTGGRIRAVFA 428
Query: 532 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591
TETLA GINMPART VL L K +T E Q+ GRAGRRGID GH V+ +
Sbjct: 429 TETLALGINMPARTVVLEKLVKFNGETHADITPAEYTQLTGRAGRRGIDIEGHAVVQWSR 488
Query: 592 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEA 651
L PL S F +Y M +NL+A Q GR + A
Sbjct: 489 GLDPLAVGGLASTRTYPLRSSFKPTYNMAVNLVA-----------------QVGRQV--A 529
Query: 652 RKLVEQSFGNY 662
R ++E SF +
Sbjct: 530 RDILETSFAQF 540
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 7/206 (3%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RLK + L +++E S + F RI V+ + L+ + V+ GE +
Sbjct: 744 ERWHRLKRETSGLKRKVEGRTNSVARTFDRICVVLTQLGYLEDD--VVTERGERLRRLYT 801
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E +L A LR+ + + L LAA ++LV E R + + S P+ V I +
Sbjct: 802 ERDLLAAECLRHDVWMRLDAPGLAACVSTLVHE---PRHEQADPSPRMPNEDVAAAITEM 858
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 1136
S +L+ HG+E+ D + MV WASG ++ + GD R ++
Sbjct: 859 QRRWSELDDLEGDHGLEVTAVPDGGMAWMVHRWASGERLDAVLRGQEMAAGDFVRRCKQI 918
Query: 1137 IDLLAQIP-KLPDVD-QRLQKNAVDA 1160
+DLL QI PD + +R + A+D
Sbjct: 919 VDLLGQIADAAPDTELRRTARKAIDG 944
>gi|326471239|gb|EGD95248.1| DEAD/DEAH box RNA helicase [Trichophyton tonsurans CBS 112818]
Length = 1292
Score = 302 bits (774), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 218/612 (35%), Positives = 313/612 (51%), Gaps = 67/612 (10%)
Query: 69 DADEAADEYDDDIDDDDD--------EEAADEYDDVSGEVSDEIQQSDDEFEVSS---DS 117
DA E A+E + ++ +D+ +E+ D E E S+DE ++ +
Sbjct: 216 DAQERAEEIREALEGEDETELKHLPSQESGDTTRKPGAEDGGEDSTSEDEEDIDALLPVE 275
Query: 118 SPAPSWREEF----------KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSS 167
PA R + +W V + E+ F E+ V ++A Y F +D FQ+ +
Sbjct: 276 YPALEPRGQLIQSSLKKSRKEWAHVVDVNKEITNF-YEL--VPDMAREYPFELDTFQKEA 332
Query: 168 IEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG 227
+ G SV V+A TS+GKT++AE A + + YT+P+KALSNQKFR+FR TF
Sbjct: 333 VYHLENGDSVFVAAHTSAGKTVVAEYAIALANKHMTKAIYTSPIKALSNQKFRDFRGTFD 392
Query: 228 DNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287
D VG+LTGD IN EA LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++D
Sbjct: 393 D--VGILTGDIQINPEASCLIMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVND 444
Query: 288 ISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWY 346
+ RG VWEE+II P+ V +I LSATV N E A W+G+ K +I++ +RPVPL Y
Sbjct: 445 LERGVVWEEVIIMLPEHVSLILLSATVPNTYEFASWVGRTKKKDIYVISTPKRPVPLEHY 504
Query: 347 FSTKTALLPLLD------EKG-KHMNRKLS-LNYLQLSTSEVKPYKDGGSRRRNSRKHAD 398
+ ++D EKG K + LS + ++ + GG + R
Sbjct: 505 LWAGKEIYKIVDSEKRFIEKGWKDADDILSGRDKVKAQKAAEAQAARGGHQSERGRGQGQ 564
Query: 399 MNSNNIVTSF-------GQHQLSKNSINAIRRS----------QVPQV-IDTLWHLRSRD 440
S T G+ Q S I I R+ Q V + + +LR R+
Sbjct: 565 RGSGQRGTGQRGGPQQRGRGQPSARGIGNIARTGRGGGRTSAAQDRNVWVHLVQYLRKRE 624
Query: 441 MLPAIWFIFNRRGCDAAVQYLED---CNLLDECEMSE-VELALKRFRILYPDAVREPAIK 496
MLPA F+F+++ C L + C D+ + VE +L R R+ D + ++
Sbjct: 625 MLPACIFVFSKKRCGENADSLSNQDFCTAADKSAIHMVVEKSLTRLRVEDRDLPQIRKVR 684
Query: 497 GLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
LL +GV HH G LPI K +E LF +GLVKV+FATET A G+N+P RT V S K
Sbjct: 685 ELLSRGVGVHHGGLLPIVKEIVEILFAKGLVKVLFATETFAMGLNLPTRTVVFSGYRKHD 744
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC---KLLFAGVEPLVSQ 612
G L + E QMAGRAGRRG+D G V++V + + A K++ L SQ
Sbjct: 745 GRGFRDLLAGEYTQMAGRAGRRGLDTVGSVIIVTSGRDEAPPITALRKMILGDPTKLRSQ 804
Query: 613 FTASYGMVLNLL 624
F +Y M+LNLL
Sbjct: 805 FRLTYNMMLNLL 816
>gi|449015367|dbj|BAM78769.1| probable viral mRNA translation inhibitor SKI2 [Cyanidioschyzon
merolae strain 10D]
Length = 1490
Score = 302 bits (774), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 189/484 (39%), Positives = 260/484 (53%), Gaps = 46/484 (9%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F +D+FQ+ +I RG SV V+A TS+GKT++AE A A+ + YT+P+K LS
Sbjct: 477 FPFELDRFQKQAILHIERGESVFVAAHTSAGKTVVAEYAIALARAHATKAIYTSPIKTLS 536
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQKFR+F + FG ++GL+TGD I A LIMTTEILR+MLY+ ++ DV+
Sbjct: 537 NQKFRDFSDRFGSESIGLITGDVCIQPTAPCLIMTTEILRSMLYRGADLIR------DVE 590
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
++ DEVHY++D RG VWEE+II P+ V II LSATV NA E A W+G+ + +I
Sbjct: 591 WVIFDEVHYVNDEERGVVWEEVIILLPEHVNIIMLSATVPNAQEFADWVGRCKQRPVYVI 650
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
T+S RPVPL Y K L+ + + +G +++ YK
Sbjct: 651 TTSHRPVPLQHYIYAKNDLILVKNARGDFLSQG---------------YKAA-------- 687
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
D+ + + L+ I P + LR R++LPA+ F F+R+ C
Sbjct: 688 --QDVERELVAKRGAKAHLAPAGILG-----RPAWGTLVQFLRKRELLPAVVFCFSRKRC 740
Query: 455 DAAVQYLEDCNLLDECEMSE------VELALKRFRILYPDAVREPAIKGLL-KGVAAHHA 507
+ A L NL + VE AL R + + ++ LL +G+ HHA
Sbjct: 741 EEAADSLGTLNLHQQNPGEAHRIHVVVESALSRLQAADRRVPQIQRVRDLLHRGIGIHHA 800
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
G LPI K E LFQRGLV+V+FATET A G+NMPART V S + K L+ E
Sbjct: 801 GLLPIVKEMTEILFQRGLVRVLFATETFAMGVNMPARTVVFSGIRKHDGRQYRLLSPGEY 860
Query: 568 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC-CKLLFAGVEP-LVSQFTASYGMVLNLLA 625
QM+GRAGRRG+D G V+L + E E K GV P L SQF SY M+LNL+
Sbjct: 861 TQMSGRAGRRGLDAYGIVILFFSVGELPTELDLKRTMTGVPPRLSSQFRLSYNMILNLIR 920
Query: 626 GAKV 629
+V
Sbjct: 921 TERV 924
>gi|301788522|ref|XP_002929677.1| PREDICTED: LOW QUALITY PROTEIN: helicase SKI2W-like [Ailuropoda
melanoleuca]
Length = 1246
Score = 302 bits (774), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 193/489 (39%), Positives = 261/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I R SV V+A TS+GKT++AE A + R YT
Sbjct: 300 IPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 359
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 360 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 415
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 416 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 471
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 472 RRHIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY------------- 518
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 519 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 566
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 687 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 746
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 747 TYTMILNLL 755
>gi|308491074|ref|XP_003107728.1| hypothetical protein CRE_12774 [Caenorhabditis remanei]
gi|308249675|gb|EFO93627.1| hypothetical protein CRE_12774 [Caenorhabditis remanei]
Length = 1297
Score = 302 bits (773), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 208/587 (35%), Positives = 313/587 (53%), Gaps = 58/587 (9%)
Query: 63 TEHKLTDADEAADEY--DDDIDDDDDE----EAADEYDDVSGEVSDEIQQSDDEFEVSSD 116
++ K+ A+ +E +++ID +D E +E + GEV I+++ ++FE +
Sbjct: 215 SKKKIAPAENIPEEIKENEEIDKEDLEIPNFPKIEEKPYIFGEV---IEKTQEKFEYAIR 271
Query: 117 SSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSS 176
A S EE +++R+ + +A Y F +D FQ+SS+ RG S
Sbjct: 272 V--ALSVEEEQEYKRL----------------LPTMARKYPFSLDPFQQSSVLCMERGES 313
Query: 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236
+ V+A TS+GKT++AE A A++ R YT+P+KALSNQKFR+F++ FGD VGL+TG
Sbjct: 314 LFVAAHTSAGKTVVAEYAIALCQAHKTRAVYTSPIKALSNQKFRDFKQIFGD--VGLVTG 371
Query: 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEE 296
D ++ EA LIMTTEILR+MLY ++ D++ +V DEVHY+++ RG VWEE
Sbjct: 372 DIQLHPEAACLIMTTEILRSMLYNGSDVIR------DLEWVVFDEVHYINNEERGHVWEE 425
Query: 297 IIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF------ST 349
++I P V+I+ LSATV N E A W+G+I + +I++ RRPVPL + T
Sbjct: 426 VLIMLPAHVKIVMLSATVPNCVEFADWVGRIKNRRINVISTERRPVPLEHFLYTGQDGKT 485
Query: 350 KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY-KDG----GSRRRNSRKHADMNSNNI 404
+ L ++D G+ + + Y S+ K Y KD G +
Sbjct: 486 QKDLFKIIDRNGQFLLK----GYNDSKDSKAKIYEKDKVVGPGGAAGRGNQRGGARGGGA 541
Query: 405 VTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC 464
+ Q S N ++ ++ + +R D LP + F+F+R+ CD Q L
Sbjct: 542 SSRSNQGGNSGGVKNWPGKNDKNIYLNLINFMRCSDQLPMVVFVFSRKRCDENAQMLASM 601
Query: 465 NLLDECEMSEVEL----ALKRFRILYPDAVREPAIKGL-LKGVAAHHAGCLPIWKSFIEE 519
NL E E V ++R + + + +K L L+G A HH+G LPI K +E
Sbjct: 602 NLTTEVEKQHVRTFFSQCIQRLKGSDKELPQVLTMKELCLRGFAVHHSGILPILKEVVEL 661
Query: 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 579
LFQ+G VK++FATET A G+NMPAR V S++K S R L E QMAGRAGRRG+
Sbjct: 662 LFQKGYVKILFATETFAMGVNMPARCVVFDSVTKHDGSERRLLNPGEYTQMAGRAGRRGL 721
Query: 580 DNRGHVVLV-QTPYEGAEECCKLLFAG-VEPLVSQFTASYGMVLNLL 624
D+ G VV++ + + K L +G L S+F +Y M+LNLL
Sbjct: 722 DSTGTVVIICKDQTIPLPDVLKNLISGQALRLESKFRVTYSMILNLL 768
>gi|354492827|ref|XP_003508546.1| PREDICTED: helicase SKI2W-like [Cricetulus griseus]
Length = 1243
Score = 302 bits (773), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 275/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS P P+ +E+ W + + V +F + + A + F D FQ+ +I
Sbjct: 265 VSLLEPPKPAAQEQ--WAVPVDVTSPVGDFYRL---IPQPAFQWSFEPDVFQKQAILHLE 319
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
+ SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 320 QHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 377
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D RG
Sbjct: 378 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDAERGV 431
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 432 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGN 491
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 492 SPKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 530
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 531 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRARAQLPVVVFTFSRGRCDEQASGLTSLD 586
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SEV L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 587 LTTSSEKSEVHLFLQRCLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILPILKEIVEML 646
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 647 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 706
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 707 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 751
>gi|440907637|gb|ELR57758.1| Helicase SKI2W, partial [Bos grunniens mutus]
Length = 1240
Score = 302 bits (773), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 192/482 (39%), Positives = 258/482 (53%), Gaps = 46/482 (9%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F D FQ+ +I R SV V+A TS+GKT++AE A + R YT+P+KALS
Sbjct: 301 WAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS 360
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++ D++
Sbjct: 361 NQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLE 412
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ + +I
Sbjct: 413 WVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVI 472
Query: 335 TSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ RPVPL Y T+ L LLD +G + Y +
Sbjct: 473 STVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAAVEA 518
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
++ KHA +FG Q + A R + L LR+R LP + F
Sbjct: 519 KKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFT 567
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVA 503
F+R CD L +L E SE+ L L+R + R+ P + + L +G+
Sbjct: 568 FSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHRGLG 627
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S L
Sbjct: 628 VHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLL 687
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M+LN
Sbjct: 688 PGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILN 747
Query: 623 LL 624
LL
Sbjct: 748 LL 749
>gi|422493681|ref|ZP_16569981.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
gi|313838257|gb|EFS75971.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
Length = 917
Score = 302 bits (773), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 189/524 (36%), Positives = 272/524 (51%), Gaps = 39/524 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ + FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGLKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN EA +++MTTE+LRNM+Y++ + +
Sbjct: 65 TPIKALSNQKFHDLVTRHGEDQVGLLTGDVTINSEAPVIVMTTEVLRNMIYRNSHTLDT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDPRVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G ++ S RRPV L + + L L D + +N +L+ ++ E + +D
Sbjct: 179 GDVRVVVSERRPVALVQHVAVARRLYELFDSRRPTEVNPELT----SIAKEEARFQRDDS 234
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV--IDTLWHLRSRDMLPAI 445
R R + + FG + R Q I + L ++LPAI
Sbjct: 235 RRPRGRSGKGKRSVSYGTGRFGGASAQRRGRGGRPRGPRNQTSRIQVVRSLHKVNLLPAI 294
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL---ALKRFRILYPDAVREPA----IKGL 498
F+F+R GCDAAV L + +L+ + +L A +R L + R +
Sbjct: 295 IFVFSRSGCDAAVSQLLNTDLVLTSQQEARQLRRIAQRRGEGLTDEERRAVGWNHFMAAF 354
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 355 ERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQT 414
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 415 HADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSTFVPTYN 474
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR E+AR L+E SF +
Sbjct: 475 MAVNLVG-----------------SMGR--EKARDLLEHSFAQF 499
Score = 47.8 bits (112), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 983 EFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAV 1042
+F RI V+ L + G + I E +L A +R + L QLAAV
Sbjct: 730 QFERIVLVLEALGYLGTGGDTVTDAGRMLSGIYSELDLVTAEAIRRGVFDGLDCPQLAAV 789
Query: 1043 CASLVSE---GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLD 1099
+++V E G + L + E + + + + R+ L+ H +E P LD
Sbjct: 790 LSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAEIGLLERDHRIERPRDLD 843
Query: 1100 SQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDLLAQI 1143
F+ AWA+G +D LDD GD R +R+ DL QI
Sbjct: 844 IGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDLAGQI 885
>gi|258653124|ref|YP_003202280.1| DSH domain-containing protein [Nakamurella multipartita DSM 44233]
gi|258556349|gb|ACV79291.1| DSH domain protein [Nakamurella multipartita DSM 44233]
Length = 940
Score = 302 bits (773), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 197/531 (37%), Positives = 268/531 (50%), Gaps = 47/531 (8%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ +A G V+V APT +GKT++ E A +A+ + FYTTP+KALSNQ
Sbjct: 43 FALDPFQVQGCQALEDGRGVLVCAPTGAGKTVVGEFAVHLALASGGKCFYTTPIKALSNQ 102
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
KF + +G + VGLLTGD+++N A +++MTTE+LRNMLY + L ++ +
Sbjct: 103 KFVDLIAQYGPDRVGLLTGDTSVNSHAPVVVMTTEVLRNMLY------AGSPDLAELTHV 156
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
VLDEVHYL+D RG VWEE+I++ +V ++ LSATV+NA+E W+ ++ G+ ++
Sbjct: 157 VLDEVHYLADKFRGPVWEEVILHLAADVAVVGLSATVSNAEEFGAWLAEVRGELAVVVDE 216
Query: 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
RPVPL + L L + + QL D R A
Sbjct: 217 VRPVPLWPHMMVGRRLFDLFSVRDQEAGPSDPPGSGQLRI-------DPALTRAIHDAEA 269
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAA 457
+ S + + R + P +D + L +LPAI FIF+R GCDAA
Sbjct: 270 LADRFGGGGSRVGRRGERGRPPGGPRWRPPNRVDVIERLDMAGLLPAITFIFSRAGCDAA 329
Query: 458 VQYL--EDCNLLDECEMSEVELALKRFRILYPDA---------VREPAIKGLLKGVAAHH 506
V L E E E+ + R + DA RE GL +GVAAHH
Sbjct: 330 VAQCVRSGLRLTTEHERDEIRQIVDRRTVELLDADLGVLGYWEWRE----GLERGVAAHH 385
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
AG LP++K +EELF GLVK VFATETLA GINMPART VL L K LT+ E
Sbjct: 386 AGLLPVFKETVEELFVAGLVKAVFATETLALGINMPARTVVLEKLGKFNGESHADLTAGE 445
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
Q+ GRAGRRGID GH V++ +P L PL S F SY M +NL+
Sbjct: 446 YTQLTGRAGRRGIDVEGHAVVLWSPGMDPRVVGGLASRRTYPLRSSFRPSYNMAVNLV-- 503
Query: 627 AKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCK 677
D QA AR L+EQSF Y + ++ ++ +
Sbjct: 504 -----------DRLGRQA------ARALIEQSFAQYQANGAVVGMARQVSR 537
>gi|358420572|ref|XP_003584660.1| PREDICTED: helicase SKI2W-like [Bos taurus]
Length = 1246
Score = 302 bits (773), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 193/489 (39%), Positives = 261/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I R SV V+A TS+GKT++AE A + R YT
Sbjct: 300 IPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 359
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 360 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 415
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 416 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 471
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 472 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY------------- 518
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 519 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 566
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 687 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 746
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 747 TYTMILNLL 755
>gi|326479334|gb|EGE03344.1| DEAD/DEAH box RNA helicase Ski2 [Trichophyton equinum CBS 127.97]
Length = 1222
Score = 302 bits (773), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 218/612 (35%), Positives = 313/612 (51%), Gaps = 67/612 (10%)
Query: 69 DADEAADEYDDDIDDDDD--------EEAADEYDDVSGEVSDEIQQSDDEFEVSS---DS 117
DA E A+E + ++ +D+ +E+ D E E S+DE ++ +
Sbjct: 146 DAQERAEEIREALEGEDETELKHLPSQESGDTTRKPGAEDGGEDSTSEDEEDIDALLPVE 205
Query: 118 SPAPSWREEF----------KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSS 167
PA R + +W V + E+ F E+ V ++A Y F +D FQ+ +
Sbjct: 206 YPALEPRGQLIQSSLKKSRKEWAHVVDVNKEITNF-YEL--VPDMAREYPFELDTFQKEA 262
Query: 168 IEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG 227
+ G SV V+A TS+GKT++AE A + + YT+P+KALSNQKFR+FR TF
Sbjct: 263 VYHLENGDSVFVAAHTSAGKTVVAEYAIALANKHMTKAIYTSPIKALSNQKFRDFRGTFD 322
Query: 228 DNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287
D VG+LTGD IN EA LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++D
Sbjct: 323 D--VGILTGDIQINPEASCLIMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVND 374
Query: 288 ISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWY 346
+ RG VWEE+II P+ V +I LSATV N E A W+G+ K +I++ +RPVPL Y
Sbjct: 375 LERGVVWEEVIIMLPEHVSLILLSATVPNTYEFASWVGRTKKKDIYVISTPKRPVPLEHY 434
Query: 347 FSTKTALLPLLD------EKG-KHMNRKLS-LNYLQLSTSEVKPYKDGGSRRRNSRKHAD 398
+ ++D EKG K + LS + ++ + GG + R
Sbjct: 435 LWAGKEIYKIVDSEKRFIEKGWKDADDILSGRDKVKAQKAAEAQAARGGHQSERGRGQGQ 494
Query: 399 MNSNNIVTSF-------GQHQLSKNSINAIRRS----------QVPQV-IDTLWHLRSRD 440
S T G+ Q S I I R+ Q V + + +LR R+
Sbjct: 495 RGSGQRGTGQRGGPQQRGRGQPSARGIGNIARTGRGGGRTSAAQDRNVWVHLVQYLRKRE 554
Query: 441 MLPAIWFIFNRRGCDAAVQYLED---CNLLDECEMSE-VELALKRFRILYPDAVREPAIK 496
MLPA F+F+++ C L + C D+ + VE +L R R+ D + ++
Sbjct: 555 MLPACIFVFSKKRCGENADSLSNQDFCTAADKSAIHMVVEKSLTRLRVEDRDLPQIRKVR 614
Query: 497 GLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
LL +GV HH G LPI K +E LF +GLVKV+FATET A G+N+P RT V S K
Sbjct: 615 ELLSRGVGVHHGGLLPIVKEIVEILFAKGLVKVLFATETFAMGLNLPTRTVVFSGYRKHD 674
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC---KLLFAGVEPLVSQ 612
G L + E QMAGRAGRRG+D G V++V + + A K++ L SQ
Sbjct: 675 GRGFRDLLAGEYTQMAGRAGRRGLDTVGSVIIVTSGRDEAPPITALRKMILGDPTKLRSQ 734
Query: 613 FTASYGMVLNLL 624
F +Y M+LNLL
Sbjct: 735 FRLTYNMMLNLL 746
>gi|358418375|ref|XP_003583920.1| PREDICTED: helicase SKI2W-like [Bos taurus]
gi|359078682|ref|XP_003587743.1| PREDICTED: helicase SKI2W-like [Bos taurus]
Length = 1246
Score = 302 bits (773), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 193/489 (39%), Positives = 261/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I R SV V+A TS+GKT++AE A + R YT
Sbjct: 300 IPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 359
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 360 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 415
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 416 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 471
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 472 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY------------- 518
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 519 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 566
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 687 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 746
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 747 TYTMILNLL 755
>gi|431921548|gb|ELK18902.1| Helicase SKI2W [Pteropus alecto]
Length = 1246
Score = 302 bits (773), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 262/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I R SV V+A TS+GKT++AE A + R YT
Sbjct: 300 IPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 359
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 360 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 415
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 416 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 471
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 472 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGTFHTKGY------------- 518
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + + A R + L LR+R
Sbjct: 519 -YAAVDAKKERMSKHAQ--------TFGAKQPTHHGGPAQDRGVY---LSLLAFLRTRAQ 566
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ + L+R + R+ P + +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHIFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 687 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMVDLHRMMMGKPSQLQSQFRL 746
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 747 TYTMILNLL 755
>gi|384201505|ref|YP_005587252.1| helicase [Bifidobacterium longum subsp. longum KACC 91563]
gi|338754512|gb|AEI97501.1| helicase [Bifidobacterium longum subsp. longum KACC 91563]
Length = 863
Score = 302 bits (773), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 187/498 (37%), Positives = 270/498 (54%), Gaps = 61/498 (12%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + +A GS+V+V+APT +GKT++A+ A + FYTTP+KALSNQ
Sbjct: 45 FELDDFQTEANDALEAGSNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKALSNQ 104
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + + +G + VGLLTGD++IN EA I++MTTE+LRNMLY+ +++ + +
Sbjct: 105 KYHDLVDVYGPDKVGLLTGDTSINSEADIVVMTTEVLRNMLYERSTTLNA------LRYV 158
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
+LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 159 ILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVISE 218
Query: 338 RRPVPLTWYF------STKTALLPLL-----DEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
RPVPL + T+ +L L E+ +N +L QL
Sbjct: 219 HRPVPLEQHVIVQADEYTEPEVLDLYRRDGNGEQATKLNAELINRLDQLD---------- 268
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR-RSQVPQ---VIDTLWHLRSRDML 442
R+ +R+ + + +A + P+ V+D L L ML
Sbjct: 269 ---RKAARRRGEERPDKRKGFGRGRGGKGAKGHAPKAERHTPRRWAVVDELNFL---GML 322
Query: 443 PAIWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAV 490
P I+FIF+R GCD AV+ + L DE EM E +L + + L
Sbjct: 323 PGIYFIFSRNGCDQAVEQCINAGLELTTDEEVTKIRRIVDEMVEGQLTQEDLKALQFSKF 382
Query: 491 REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
R L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+
Sbjct: 383 R----FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEK 438
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGV 606
L K +G + LT E Q+ GRAGRRGID GH ++V P A K ++
Sbjct: 439 LEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY--- 495
Query: 607 EPLVSQFTASYGMVLNLL 624
PL S F ++ M +NLL
Sbjct: 496 -PLHSSFRPTFNMAVNLL 512
>gi|156100705|ref|XP_001616046.1| ATP dependent RNA helicase [Plasmodium vivax Sal-1]
gi|148804920|gb|EDL46319.1| ATP dependent RNA helicase, putative [Plasmodium vivax]
Length = 1387
Score = 302 bits (773), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 181/481 (37%), Positives = 262/481 (54%), Gaps = 42/481 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ+ SIE R SV+VSA TS+GKT+IAE A + +++R+ YT+P+K
Sbjct: 257 ARTYKFELDTFQKKSIECLERNESVLVSAHTSAGKTVIAEYAIALGLRDKQRVIYTSPIK 316
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+R+ E F D VGL+TGD +IN +A I++MTTEILR+MLY+ +
Sbjct: 317 ALSNQKYRDLSEEFKD--VGLITGDISINTDASIIVMTTEILRSMLYRGSSLTK------ 368
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
+V ++ DE+HY+ D RG +WEE II P V+ I LSAT+ N + A W+ I +
Sbjct: 369 EVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIKSQAC 428
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y ++ ++ + DE N+ N + + +K
Sbjct: 429 HIVYTDYRPTPLQHYIYPTSSESVFLICDE-----NKDFKKNNFIKAVNAIK-------- 475
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
MN ++ GQHQ N + + + + SR+ P I F F
Sbjct: 476 -------EKMN----LSEDGQHQNGNNKHQRRGKKNIHDIEKIVQMCHSRNYTPLIIFAF 524
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVAA 504
+++ C+ + +L D+ E + EL +IL D P ++ LL+G+
Sbjct: 525 SKKECEINATSMHKVDLTDDTEKEVIKELYENAIQILADDDRALPQVQFILPLLLRGIGI 584
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH G LPI K IE +FQ L+KV+F+TET + GINMPA+T V +SL+K + +TS
Sbjct: 585 HHGGLLPIIKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVVFTSLTKFDGVEKRLITS 644
Query: 565 NELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E QMAGRAGRRG+D+RG V +++ TP E KL LVSQF Y M+LNL
Sbjct: 645 GEYIQMAGRAGRRGLDDRGIVIIMLDTPLH-WREAEKLFVGEANRLVSQFHLGYNMILNL 703
Query: 624 L 624
L
Sbjct: 704 L 704
>gi|417970759|ref|ZP_12611690.1| hypothetical protein CgS9114_07015 [Corynebacterium glutamicum
S9114]
gi|344045055|gb|EGV40729.1| hypothetical protein CgS9114_07015 [Corynebacterium glutamicum
S9114]
Length = 929
Score = 302 bits (773), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 184/496 (37%), Positives = 263/496 (53%), Gaps = 47/496 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ E + F +D+FQ +A V+V APT +GKT++ E A ++ + FYT
Sbjct: 11 LSEFIADLGFDLDEFQIKGCQAVEEDHGVLVCAPTGAGKTIVGEFAVSLALSRGTKCFYT 70
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + G + VGLLTGD +IN +A I++MTTE+LRNM+Y +
Sbjct: 71 TPIKALSNQKYHDLVAKHGSDAVGLLTGDVSINHDADIVVMTTEVLRNMIY------AGS 124
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L + +V+DE+H+L+D SRG VWEE+I+ V II LSATV+N++E W+ +
Sbjct: 125 FALERLSHVVMDEIHFLADASRGAVWEEVILNLDDSVNIIGLSATVSNSEEFGEWLTTVR 184
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVK----P 382
G T +I + RPVPL Y + ++PL E G +N++L +L++ + +
Sbjct: 185 GDTRVIVTDHRPVPLDQYMMVQRKVMPLF-EPGTDGRVNKELEATIDRLNSKQSEQGRAA 243
Query: 383 YKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y+ G G R R+ D + L + P+V+ L + +M
Sbjct: 244 YRSGEGFRARSKGDKQDSRTGKPRAQDRHRPLGR-----------PEVLSIL---KGINM 289
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA----- 494
LPAI FIF+R GCD A+ L+ D+ E E+ RI+ V P
Sbjct: 290 LPAITFIFSRAGCDGALYQCLRSKLVLTDQAESEEIA------RIVDAGVVGIPEEDLQV 343
Query: 495 ------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL
Sbjct: 344 LNFKQWRAALMRGFAAHHAGMLPAFRHIVEELFVKGLVRAVFATETLALGINMPARTVVL 403
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
+ K G + LT + Q+ GRAGRRGID G+ V+ +P L P
Sbjct: 404 EKMVKFDGEGHVDLTPGQYTQLTGRAGRRGIDVLGNAVVQWSPALDPRWVAGLASTRTYP 463
Query: 609 LVSQFTASYGMVLNLL 624
L+S F Y M +NLL
Sbjct: 464 LISTFQPGYNMSVNLL 479
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 97/216 (44%), Gaps = 14/216 (6%)
Query: 955 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI---NTQVIFPLGETA 1011
T E++ R + +LT +++ + + F RI +++ E +D + VI GE
Sbjct: 708 TAERMIRKERDLAKLTGNVDKARETLGRTFERILSLLSEMDYVDYSDPDNPVITDEGERL 767
Query: 1012 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 1071
A I E +L +A L+ I +L PA+LA V + E + + + + +
Sbjct: 768 AKIHSEADLLVAQCLKRGIWDNLDPAELAGVVSMCTFENRR----ETGGEAQAVTEAMAD 823
Query: 1072 VINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDD 1126
+N ++ +E + +H + I ++ F+ + WASG M A L
Sbjct: 824 SMNSVERIWGELVEDERRHRLPITRQPEAGFATAIHQWASGAPLGYCMAAAAENGAELTP 883
Query: 1127 GDLARLLRRTIDLLAQIPKLPDVDQ--RLQKNAVDA 1160
GD R R+ IDLL Q+ K +D+ R + A+DA
Sbjct: 884 GDFVRWCRQVIDLLEQVAKTAYLDETTRNARQAIDA 919
>gi|423348986|ref|ZP_17326642.1| hypothetical protein HMPREF9156_00180 [Scardovia wiggsiae F0424]
gi|393703215|gb|EJD65416.1| hypothetical protein HMPREF9156_00180 [Scardovia wiggsiae F0424]
Length = 890
Score = 302 bits (773), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 198/548 (36%), Positives = 289/548 (52%), Gaps = 73/548 (13%)
Query: 109 DEFEVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSI 168
D F ++ SPA + + F+ +R + E + A F +DKFQR ++
Sbjct: 36 DTFSCNAGPSPAQKY-QAFRERRRQ-----------EGTSAAQFAQSLPFGLDKFQRRAL 83
Query: 169 EAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGD 228
+ G++++V+APT +GKT+IA+ A + + FYTTP+KALSNQK+ E +G
Sbjct: 84 DDLESGNNLLVAAPTGAGKTVIADFAIHLAQQDNVKAFYTTPIKALSNQKYHELANRYGP 143
Query: 229 NNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI 288
+ VGLLTGD +IN +A I++MTTE+LRNMLY+ +++ + ++LDE+HYL+D
Sbjct: 144 DKVGLLTGDISINSQADIIVMTTEVLRNMLYEDSATLTA------LRYVILDEIHYLADR 197
Query: 289 SRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFS 348
RG VWEE+II+ P+ V+I+ LSATV+N ++ A WI + G+T L+ S +RPVPL
Sbjct: 198 MRGQVWEEVIIHLPRTVKIVGLSATVSNVEDFARWIESVRGETSLVVSEKRPVPLIQEV- 256
Query: 349 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG-----------GSRRRNSRKHA 397
LL K R +SL YL TS V P S + +
Sbjct: 257 -------LLQHDQKKEPRLVSL-YLNGDTSAVNPELTALIKQWDHEAVRSSAGAGGKPYR 308
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ---VIDTLWHLRSRDMLPAIWFIFNRRGC 454
TS Q L K+S N P+ V+D L L DMLP I+FIF+R GC
Sbjct: 309 RGRGGGAGTSSRQGSL-KDSRNRPAARYAPKRWAVVDELDFL---DMLPGIYFIFSRNGC 364
Query: 455 DAAVQYLEDCNLLDECEMSEVELA----LKRFRILYPDAVREPAI--------------K 496
D AV+ +C + ++L +R R + D++ E I
Sbjct: 365 DKAVE---------QCMRAGLQLTGDSEARRIRRIV-DSMAEGRISRDDARALGFANFRN 414
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+A HHAG + +++ +E+LF++GL+K+VFATETLA GINMPAR V+ L K
Sbjct: 415 ALEQGIAPHHAGMVALYREIVEKLFEQGLLKIVFATETLALGINMPARCVVVEKLEKFNG 474
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
L+ E Q+ GRAGRRGID+ G+ ++V L V PL S F +
Sbjct: 475 VSHETLSPGEFTQLTGRAGRRGIDSVGYAIVVDHRDFEPSTAAALSSKRVYPLHSSFRPT 534
Query: 617 YGMVLNLL 624
+ M +NLL
Sbjct: 535 FNMAVNLL 542
>gi|380788617|gb|AFE66184.1| helicase SKI2W [Macaca mulatta]
Length = 1246
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 193/489 (39%), Positives = 261/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I R SV V+A TS+GKT++AE A + R YT
Sbjct: 300 IPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 359
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 360 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 415
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 416 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 471
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 472 RRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY------------- 518
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 519 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 566
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 687 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 746
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 747 TYTMILNLL 755
>gi|402589575|gb|EJW83507.1| ATP-dependent RNA helicase DOB1 [Wuchereria bancrofti]
Length = 924
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 179/481 (37%), Positives = 268/481 (55%), Gaps = 46/481 (9%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A +Y+F++D FQR +I SV+VSA TS+GKT++A A ++ +++R+ YT+P+K
Sbjct: 14 AKMYEFQLDAFQREAITCIDNSHSVLVSAHTSAGKTVVALYAIAMSLRDKQRVIYTSPIK 73
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE E FGD VGL+TGD+ +N +A ++MTTEILR+MLY+ ++
Sbjct: 74 ALSNQKYRELEEEFGD--VGLMTGDNTLNPDASCIVMTTEILRSMLYRGSEIMR------ 125
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A W+ +H +
Sbjct: 126 EVGWVIFDEIHYMRDKERGVVWEETIILLPDTVHYVFLSATIPNARQFADWVVYLHDQPV 185
Query: 332 ELITSSRRPVPLTW--YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
+I + RPVPL Y + + L +++ +G K +
Sbjct: 186 HVIYTDYRPVPLQHFIYPAGGSGLYEVVNMQGIFREDKFT-------------------- 225
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
MN + V GQ +++ S P V++ + L+ RDM+P I F F
Sbjct: 226 -------EAMNVLSQVGDAGQGGINRGKKGGT--SGTPHVVNIIRTLKERDMIPVIIFSF 276
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVAA 504
+R+ C+A + + + E E ++V E+ + +L + + P I LL+G+
Sbjct: 277 SRKECEAYATQMTNLDFNTEDEKAKVKEIFVNAISLLSDEDSKLPEIGRVLPLLLRGIGV 336
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LF GL+K +FATET A G+NMPART + +S K +TS
Sbjct: 337 HHSGLLPIVKEVIEILFGEGLIKTLFATETFAMGLNMPARTVLFTSARKFDGKDYRWITS 396
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV-EPLVSQFTASYGMVLNL 623
E QM+GRAGRRG D+RG V+L+ G + +++ G +PL SQF +Y MVLNL
Sbjct: 397 GEYIQMSGRAGRRGKDDRGLVILMVDQQMGQDVAKQIIKGGAPDPLNSQFRLTYNMVLNL 456
Query: 624 L 624
L
Sbjct: 457 L 457
>gi|23335111|ref|ZP_00120349.1| COG4581: Superfamily II RNA helicase [Bifidobacterium longum
DJO10A]
gi|189439330|ref|YP_001954411.1| superfamily II RNA helicase [Bifidobacterium longum DJO10A]
gi|419847674|ref|ZP_14370840.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 1-6B]
gi|419854700|ref|ZP_14377481.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 44B]
gi|189427765|gb|ACD97913.1| Superfamily II RNA helicase [Bifidobacterium longum DJO10A]
gi|386410508|gb|EIJ25289.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 1-6B]
gi|386417358|gb|EIJ31842.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 44B]
Length = 863
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 187/498 (37%), Positives = 269/498 (54%), Gaps = 61/498 (12%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + +A GS+V+V+APT +GKT++A+ A + FYTTP+KALSNQ
Sbjct: 45 FELDDFQTEANDALEAGSNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKALSNQ 104
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + + +G + VGLLTGD++IN EA I++MTTE+LRNMLY+ +++ + +
Sbjct: 105 KYHDLVDVYGPDKVGLLTGDTSINSEADIVVMTTEVLRNMLYERSTTLNA------LRYV 158
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
+LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 159 ILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVISE 218
Query: 338 RRPVPLTWYF------STKTALLPLLDEKGK-----HMNRKLSLNYLQLSTSEVKPYKDG 386
RPVPL + T+ +L L G +N +L QL
Sbjct: 219 HRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQLD---------- 268
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR-RSQVPQ---VIDTLWHLRSRDML 442
R+ +R+ + + +A + P+ V+D L L ML
Sbjct: 269 ---RKAARRRGEERPDKRKGFGRGRGGKGAKGHAPKAERHTPRRWAVVDELNFL---GML 322
Query: 443 PAIWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAV 490
P I+FIF+R GCD AV+ + L DE EM E +L + + L
Sbjct: 323 PGIYFIFSRNGCDQAVEQCINAGLELTTDEEVTKIRRIVDEMVEGQLTQEDLKALQFSKF 382
Query: 491 REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
R L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+
Sbjct: 383 R----FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEK 438
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGV 606
L K +G + LT E Q+ GRAGRRGID GH ++V P A K ++
Sbjct: 439 LEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY--- 495
Query: 607 EPLVSQFTASYGMVLNLL 624
PL S F ++ M +NLL
Sbjct: 496 -PLHSSFRPTFNMAVNLL 512
>gi|355561557|gb|EHH18189.1| Helicase SKI2W [Macaca mulatta]
Length = 1246
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 193/489 (39%), Positives = 261/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I R SV V+A TS+GKT++AE A + R YT
Sbjct: 300 IPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 359
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 360 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 415
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 416 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 471
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 472 RRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY------------- 518
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 519 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 566
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 687 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 746
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 747 TYTMILNLL 755
>gi|322691260|ref|YP_004220830.1| helicase [Bifidobacterium longum subsp. longum JCM 1217]
gi|419849901|ref|ZP_14372923.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 35B]
gi|320456116|dbj|BAJ66738.1| putative helicase [Bifidobacterium longum subsp. longum JCM 1217]
gi|386410855|gb|EIJ25627.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 35B]
Length = 863
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 187/498 (37%), Positives = 269/498 (54%), Gaps = 61/498 (12%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + +A GS+V+V+APT +GKT++A+ A + FYTTP+KALSNQ
Sbjct: 45 FELDDFQTEANDALEAGSNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKALSNQ 104
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + + +G + VGLLTGD++IN EA I++MTTE+LRNMLY+ +++ + +
Sbjct: 105 KYHDLVDVYGPDKVGLLTGDTSINSEADIVVMTTEVLRNMLYERSTTLNA------LRYV 158
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
+LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 159 ILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVISE 218
Query: 338 RRPVPLTWYF------STKTALLPLLDEKGK-----HMNRKLSLNYLQLSTSEVKPYKDG 386
RPVPL + T+ +L L G +N +L QL
Sbjct: 219 HRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQLD---------- 268
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR-RSQVPQ---VIDTLWHLRSRDML 442
R+ +R+ + + +A + P+ V+D L L ML
Sbjct: 269 ---RKAARRRGEERPDKRKGFGRGRGGKGAKGHAPKAERHTPRRWAVVDELNFL---GML 322
Query: 443 PAIWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAV 490
P I+FIF+R GCD AV+ + L DE EM E +L + + L
Sbjct: 323 PGIYFIFSRNGCDQAVEQCINAGLELTTDEEVTKIRRIVDEMVEGQLTQEDLKALQFSKF 382
Query: 491 REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
R L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+
Sbjct: 383 R----FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEK 438
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGV 606
L K +G + LT E Q+ GRAGRRGID GH ++V P A K ++
Sbjct: 439 LEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY--- 495
Query: 607 EPLVSQFTASYGMVLNLL 624
PL S F ++ M +NLL
Sbjct: 496 -PLHSSFRPTFNMAVNLL 512
>gi|355762473|gb|EHH61971.1| Helicase SKI2W [Macaca fascicularis]
Length = 1246
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 193/489 (39%), Positives = 261/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I R SV V+A TS+GKT++AE A + R YT
Sbjct: 300 IPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 359
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 360 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 415
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 416 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 471
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 472 RRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY------------- 518
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 519 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 566
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 687 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 746
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 747 TYTMILNLL 755
>gi|353236742|emb|CCA68730.1| probable SKI2-antiviral protein and putative helicase
[Piriformospora indica DSM 11827]
Length = 1236
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 184/497 (37%), Positives = 261/497 (52%), Gaps = 41/497 (8%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V E+A Y F +D FQ+ ++ +G SV V+A TS+GKT++AEA YT
Sbjct: 261 VPEMAHNYPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEA------------IYT 308
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+F+ TF ++VG+LTGD IN EA LIMTTEILR+MLY+ ++
Sbjct: 309 SPIKALSNQKFRDFKTTFSASSVGILTGDVQINPEANCLIMTTEILRSMLYKGADLIR-- 366
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D RG VWEE+II P V II LSATV N E A W+G+
Sbjct: 367 ----DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTK 422
Query: 329 GK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
K +I++ +RPVPL + ++D KG ++ L + K + G
Sbjct: 423 KKDIYVISTPKRPVPLEHFLYAGKETFKIVDAKGSFLSSGYKEAGEALRRKQDKEREAAG 482
Query: 388 ---SRRRNSRKHADMNSNNIVTSFGQHQLSKNSI---------NAIRRSQVPQVIDTLWH 435
+R +R A + + + L H
Sbjct: 483 LPPVQRLGARAAAPQRGQRGGGPGRGAATRGGGVVKTGPMGGARTFHSADKNLYVHLLNH 542
Query: 436 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE----VELALKRFRILYPDAVR 491
LR +++LP + F F+++ C+ L + +L E SE VE AL R + +
Sbjct: 543 LRKKELLPVVVFTFSKKRCEENAATLTNADLCTSVEKSEVHVAVEKALSRLKGTDKQLPQ 602
Query: 492 EPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
++ LL +G+ HH G LPI K +E LF RGLVK++FATET A G+NMPAR V S
Sbjct: 603 IGRMRDLLSRGIGVHHGGLLPIVKEVVEILFARGLVKILFATETFAMGVNMPARCVVFSG 662
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVE 607
+ K +L + E QM+GRAGRRG+D+ G VV+V + P K++
Sbjct: 663 IRKHDGKSFRELLAGEYTQMSGRAGRRGLDSTGVVVIVAGDELPEMAT--LNKMMLGTPS 720
Query: 608 PLVSQFTASYGMVLNLL 624
L SQF +Y M+LNLL
Sbjct: 721 RLQSQFRLTYNMILNLL 737
>gi|417931509|ref|ZP_12574874.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182B-JCVI]
gi|340775452|gb|EGR97505.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182B-JCVI]
Length = 917
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 189/525 (36%), Positives = 271/525 (51%), Gaps = 41/525 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+D + F D +Q + + G+ V+V+APT +GKT++ E A +A+ ++ FYT
Sbjct: 5 LDRFIAGLSFEPDDYQVKACQDLDDGAGVLVAAPTGAGKTVVGEYATDLALASGQKCFYT 64
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQKF + G++ VGLLTGD IN +A +++MTTE+LRNM+Y++ +++
Sbjct: 65 TPIKALSNQKFHDLVARHGEDQVGLLTGDVTINSQAPVVVMTTEVLRNMIYRNSHTLNT- 123
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ +VLDEVHYL+D RG VWEE+I+ V+I+ LSATV+NA+E W+ ++
Sbjct: 124 -----LGWVVLDEVHYLADRFRGPVWEEVILGLDSRVKIVGLSATVSNAEEFGEWLDEVR 178
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN--YLQLSTSEVKPYKDG 386
G ++ S RRPVPLT + + L L D + R +N + ++ E + +D
Sbjct: 179 GGVRVVVSERRPVPLTQHVAVARHLHNLFDSR-----RPTDVNPELVSIAKEEARFQRDD 233
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS--QVPQVIDTLWHLRSRDMLPA 444
R R N + FG + + R P I + L +LPA
Sbjct: 234 SRRPRGRSGKGKRNVSYGTGRFGGASAQRRGRSDRPRGPRNQPSRIQVVRSLHKASLLPA 293
Query: 445 IWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPA-----IKG 497
I F+F+R GCDAAV L D L ++ E ++ + D R +
Sbjct: 294 IIFVFSRSGCDAAVSQLLNTDVVLTNQQEARQLRRIAEHHGEGLTDEERRAVGWNHFVAA 353
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
+G+AAHHAG LP+ K+ +EE F GL+KVV ATETLA GINMPART VL L K
Sbjct: 354 FERGIAAHHAGLLPVIKAIVEEGFVAGLLKVVVATETLALGINMPARTVVLEKLVKYNGQ 413
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
+T E Q+ GRAGRRGID +GH V+ P L PL S F +Y
Sbjct: 414 THADITPGEYTQLTGRAGRRGIDTQGHAVVCWQPGMDPRAVAGLASRRTYPLNSAFVPTY 473
Query: 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ GR +AR L+E SF +
Sbjct: 474 NMAVNLVG-----------------SMGRG--KARDLLEHSFAQF 499
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 80/193 (41%), Gaps = 17/193 (8%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL RS+R + S +F RI V+ L + + G A I
Sbjct: 704 ERAMRLNRRSERELAKSRAKATSIATKFERIVLVLEALGYLGEGGETVTDAGRMLAGIYS 763
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSSIYEPSTTVINVI 1073
E +L +R + L QLAAV +++V E G + L + E + + + I
Sbjct: 764 ELDLVTTEAIRRGVFDSLDCPQLAAVLSTIVHESRPGDRSHLHRMPDRDSEAAESQLRAI 823
Query: 1074 NVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLA 1130
R+ L+ H +E P LD F+ AWA+G +D LDD GD
Sbjct: 824 ------RAEIGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFV 872
Query: 1131 RLLRRTIDLLAQI 1143
R +R+ DL QI
Sbjct: 873 RRVRQVCDLAGQI 885
>gi|74199459|dbj|BAE41420.1| unnamed protein product [Mus musculus]
Length = 884
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 262/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I + SV V+A TS+GKT++AE A + R YT
Sbjct: 297 IPQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 356
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 357 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 412
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++
Sbjct: 413 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLK 468
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 469 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY------------- 515
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 516 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 563
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 564 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 623
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 624 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 683
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 684 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 743
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 744 TYTMILNLL 752
>gi|384940060|gb|AFI33635.1| helicase SKI2W [Macaca mulatta]
Length = 1246
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 193/489 (39%), Positives = 261/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I R SV V+A TS+GKT++AE A + R YT
Sbjct: 300 IPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 359
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 360 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 415
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 416 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 471
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 472 RRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY------------- 518
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 519 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 566
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 687 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 746
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 747 TYTMILNLL 755
>gi|148694811|gb|EDL26758.1| mCG15924, isoform CRA_g [Mus musculus]
Length = 1086
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 192/480 (40%), Positives = 258/480 (53%), Gaps = 46/480 (9%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F D FQ+ +I + SV V+A TS+GKT++AE A + R YT+P+KALSNQ
Sbjct: 148 FEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQ 207
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
KFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY S + D++ +
Sbjct: 208 KFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLY------SGSDVIRDLEWV 259
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITS 336
+ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++ + +I++
Sbjct: 260 IFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQIYVIST 319
Query: 337 SRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
RPVPL Y T+ L LLD +G + Y +++
Sbjct: 320 VARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY--------------YAAVEAKK 365
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
KHA +FG Q + A R + L LR+R LP + F F+
Sbjct: 366 ERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFS 414
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAH 505
R CD L +L E SE+ L L+R + R+ P + + L +G+ H
Sbjct: 415 RGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRRGLGVH 474
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
H+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S L
Sbjct: 475 HSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPG 534
Query: 566 ELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 535 EYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 594
>gi|145295622|ref|YP_001138443.1| hypothetical protein cgR_1549 [Corynebacterium glutamicum R]
gi|140845542|dbj|BAF54541.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 929
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 184/496 (37%), Positives = 263/496 (53%), Gaps = 47/496 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ E + F +D+FQ +A V+V APT +GKT++ E A ++ + FYT
Sbjct: 11 LSEFIADLGFDLDEFQIKGCQAVEEDHGVLVCAPTGAGKTIVGEFAVSLALSRGTKCFYT 70
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + G + VGLLTGD +IN +A I++MTTE+LRNM+Y +
Sbjct: 71 TPIKALSNQKYHDLVAKHGSDAVGLLTGDVSINHDADIVVMTTEVLRNMIY------AGS 124
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L + +V+DE+H+L+D SRG VWEE+I+ V II LSATV+N++E W+ +
Sbjct: 125 FALERLSHVVMDEIHFLADASRGAVWEEVILNLDDSVNIIGLSATVSNSEEFGEWLTTVR 184
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVK----P 382
G T +I + RPVPL Y + ++PL E G +N++L +L++ + +
Sbjct: 185 GDTRVIVTDHRPVPLDQYMMVQRKVMPLF-EPGTDGRVNKELEATIDRLNSKQSEQGRAA 243
Query: 383 YKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y+ G G R R+ D + L + P+V+ L + +M
Sbjct: 244 YRSGEGFRARSKGDKQDSRTGKPREQDRHRPLGR-----------PEVLSIL---KGINM 289
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA----- 494
LPAI FIF+R GCD A+ L+ D+ E E+ RI+ V P
Sbjct: 290 LPAITFIFSRAGCDGALYQCLRSKLVLTDQAESEEIA------RIVDAGVVGIPEEDLQV 343
Query: 495 ------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL
Sbjct: 344 LNFKQWRAALMRGFAAHHAGMLPAFRHIVEELFVKGLVRAVFATETLALGINMPARTVVL 403
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
+ K G + LT + Q+ GRAGRRGID G+ V+ +P L P
Sbjct: 404 EKMVKFDGEGHVDLTPGQYTQLTGRAGRRGIDVLGNAVVQWSPALDPRWVAGLASTRTYP 463
Query: 609 LVSQFTASYGMVLNLL 624
L+S F Y M +NLL
Sbjct: 464 LISTFQPGYNMSVNLL 479
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 14/216 (6%)
Query: 955 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI---NTQVIFPLGETA 1011
T E++ R + +LT +++ + + F RI +++ E +D + VI GE
Sbjct: 708 TAERMIRKERDLAKLTGNVDKARETLGRTFERILSLLSEMDYVDYSDPDNPVITDEGERL 767
Query: 1012 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 1071
A I E +L +A L+ I +L PA+LA V + E + + + + +
Sbjct: 768 AKIHSEADLLVAQCLKRGIWDNLDPAELAGVVSMCTFENRR----ETGGEAQAVTEAMAD 823
Query: 1072 VINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDD 1126
+N ++ +E + +H + I ++ F+ + WASG M A L
Sbjct: 824 SMNSVERIWGELVEDERRHRLPITRQPEAGFATAIHQWASGAPLGYCMAAAAENGAELTP 883
Query: 1127 GDLARLLRRTIDLLAQIPKLPDVDQ--RLQKNAVDA 1160
GD R R+ IDLL Q+ K D+ R + A+DA
Sbjct: 884 GDFVRWCRQVIDLLEQVAKTAYFDETTRNARQAIDA 919
>gi|317483253|ref|ZP_07942248.1| DEAD/DEAH box helicase [Bifidobacterium sp. 12_1_47BFAA]
gi|316915322|gb|EFV36749.1| DEAD/DEAH box helicase [Bifidobacterium sp. 12_1_47BFAA]
Length = 863
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 187/498 (37%), Positives = 269/498 (54%), Gaps = 61/498 (12%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + +A GS+V+V+APT +GKT++A+ A + FYTTP+KALSNQ
Sbjct: 45 FELDDFQTEANDALEAGSNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKALSNQ 104
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + + +G + VGLLTGD++IN EA I++MTTE+LRNMLY+ +++ + +
Sbjct: 105 KYHDLVDVYGPDKVGLLTGDTSINSEADIVVMTTEVLRNMLYERSTTLNA------LRYV 158
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
+LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 159 ILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVISE 218
Query: 338 RRPVPLTWYF------STKTALLPLLDEKGK-----HMNRKLSLNYLQLSTSEVKPYKDG 386
RPVPL + T+ +L L G +N +L QL
Sbjct: 219 HRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQLD---------- 268
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR-RSQVPQ---VIDTLWHLRSRDML 442
R+ +R+ + + +A + P+ V+D L L ML
Sbjct: 269 ---RKAARRRGEERPDKRKGFGRGRGGKGAKGHAPKAERHTPRRWAVVDELNFL---GML 322
Query: 443 PAIWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAV 490
P I+FIF+R GCD AV+ + L DE EM E +L + + L
Sbjct: 323 PGIYFIFSRNGCDQAVEQCINAGLELTTDEEVTKIRRIVDEMVEGQLTQEDLKALQFSKF 382
Query: 491 REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
R L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+
Sbjct: 383 R----FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEK 438
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGV 606
L K +G + LT E Q+ GRAGRRGID GH ++V P A K ++
Sbjct: 439 LEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY--- 495
Query: 607 EPLVSQFTASYGMVLNLL 624
PL S F ++ M +NLL
Sbjct: 496 -PLHSSFRPTFNMAVNLL 512
>gi|432089456|gb|ELK23398.1| Helicase SKI2W [Myotis davidii]
Length = 1245
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 199/525 (37%), Positives = 275/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS P P +E+ W + + V +F + + A + F D FQ+ +I
Sbjct: 268 VSPSEPPKPLPQEQ--WAIPVDVTSPVGDFYRL---IPQPAFQWPFEPDVFQKQAILHLE 322
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 323 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 380
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D RG
Sbjct: 381 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDAERGV 434
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +++++ RPVPL Y
Sbjct: 435 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVVSTAARPVPLEHYLFTGN 494
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 495 SPKTQGELFLLLDSRGTFHTKGY--------------YAAVEAKKERMSKHAQ------- 533
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 534 -TFGAKQPTHQGGPAQDRGVY---LSLLTSLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 589
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 590 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEML 649
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K + L E QMAGRAGRRG+D
Sbjct: 650 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGNAFRDLLPGEYVQMAGRAGRRGLD 709
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 710 PTGTVILLCKGRVPEMVDLHRMMTGKPSQLQSQFRLTYTMILNLL 754
>gi|148694806|gb|EDL26753.1| mCG15924, isoform CRA_b [Mus musculus]
Length = 1095
Score = 301 bits (771), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 262/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I + SV V+A TS+GKT++AE A + R YT
Sbjct: 297 IPQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 356
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 357 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 412
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++
Sbjct: 413 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLK 468
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 469 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY------------- 515
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 516 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 563
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 564 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 623
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 624 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 683
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 684 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 743
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 744 TYTMILNLL 752
>gi|67968007|dbj|BAE00485.1| unnamed protein product [Macaca fascicularis]
Length = 1146
Score = 301 bits (771), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 192/482 (39%), Positives = 258/482 (53%), Gaps = 46/482 (9%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F D FQ+ +I R SV V+A TS+GKT++AE A + R YT+P+KALS
Sbjct: 207 WAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS 266
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++ D++
Sbjct: 267 NQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLE 318
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++ + +I
Sbjct: 319 WVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVI 378
Query: 335 TSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ RPVPL Y T+ L LLD +G + Y +
Sbjct: 379 STVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY--------------YAAVEA 424
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
++ KHA +FG Q + A R + L LR+R LP + F
Sbjct: 425 KKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFT 473
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVA 503
F+R CD L +L E SE+ L L+R + R+ P + + L +G+
Sbjct: 474 FSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLG 533
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S L
Sbjct: 534 VHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLL 593
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M+LN
Sbjct: 594 PGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILN 653
Query: 623 LL 624
LL
Sbjct: 654 LL 655
>gi|418244352|ref|ZP_12870772.1| hypothetical protein KIQ_02566 [Corynebacterium glutamicum ATCC
14067]
gi|354511589|gb|EHE84498.1| hypothetical protein KIQ_02566 [Corynebacterium glutamicum ATCC
14067]
Length = 929
Score = 301 bits (771), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 184/496 (37%), Positives = 263/496 (53%), Gaps = 47/496 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ E + F +D+FQ +A V+V APT +GKT++ E A ++ + FYT
Sbjct: 11 LSEFIADLGFDLDEFQIKGCQAVEEDHGVLVCAPTGAGKTIVGEFAVSLALSRGTKCFYT 70
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + G + VGLLTGD +IN +A I++MTTE+LRNM+Y +
Sbjct: 71 TPIKALSNQKYHDLVAKHGSDAVGLLTGDVSINHDADIVVMTTEVLRNMIY------AGS 124
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L + +V+DE+H+L+D SRG VWEE+I+ V II LSATV+N++E W+ +
Sbjct: 125 FALERLSHVVMDEIHFLADASRGAVWEEVILNLDDSVNIIGLSATVSNSEEFGEWLTTVR 184
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVK----P 382
G T +I + RPVPL Y + ++PL E G +N++L +L++ + +
Sbjct: 185 GDTRVIVTDHRPVPLDQYMMVQRKVMPLF-EPGTDGRVNKELEATIDRLNSKQSEQGRAA 243
Query: 383 YKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y+ G G R R+ D + L + P+V+ L + +M
Sbjct: 244 YRSGEGFRARSKGDKQDSRTGKPREQDRHRPLGR-----------PEVLSIL---KGINM 289
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA----- 494
LPAI FIF+R GCD A+ L+ D+ E E+ RI+ V P
Sbjct: 290 LPAITFIFSRAGCDGALYQCLRSKLVLTDQAESEEIA------RIVDAGVVGIPEEDLQV 343
Query: 495 ------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL
Sbjct: 344 LNFKQWRAALMRGFAAHHAGMLPAFRHIVEELFVKGLVRAVFATETLALGINMPARTVVL 403
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
+ K G + LT + Q+ GRAGRRGID G+ V+ +P L P
Sbjct: 404 EKMVKFDGEGHVDLTPGQYTQLTGRAGRRGIDVLGNAVVQWSPALDPRWVAGLASTRTYP 463
Query: 609 LVSQFTASYGMVLNLL 624
L+S F Y M +NLL
Sbjct: 464 LISTFQPGYNMSVNLL 479
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 97/216 (44%), Gaps = 14/216 (6%)
Query: 955 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI---NTQVIFPLGETA 1011
T E++ R + +LT +++ + + F RI +++ E +D + VI GE
Sbjct: 708 TAERMIRKERDLAKLTGNVDKARETLGRTFERILSLLSEMDYVDYSNPDNPVITDEGERL 767
Query: 1012 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 1071
A I E +L +A L+ I +L PA+LA V + E + + + + +
Sbjct: 768 AKIHSEADLLVAQCLKRGIWDNLDPAELAGVVSMCTFENRR----ETGGEAQAVTEAMAD 823
Query: 1072 VINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDD 1126
+N ++ +E + +H + I ++ F+ + WASG M A L
Sbjct: 824 SMNSVERIWGELVEDERRHRLPITRQPEAGFATAIHQWASGAPLGYCMAAAAENGAELTP 883
Query: 1127 GDLARLLRRTIDLLAQIPKLPDVDQ--RLQKNAVDA 1160
GD R R+ IDLL Q+ K +D+ R + A+DA
Sbjct: 884 GDFVRWCRQVIDLLEQVAKTAYLDETTRNARQAIDA 919
>gi|341880403|gb|EGT36338.1| hypothetical protein CAEBREN_19438 [Caenorhabditis brenneri]
Length = 1187
Score = 301 bits (771), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 200/589 (33%), Positives = 306/589 (51%), Gaps = 55/589 (9%)
Query: 56 SPKSFFPTEHKLTDADEAADEYDDDIDDDDDE------EAADEYDDVSGEVSDEIQQSDD 109
SP P + T + DE++ DDDE + + + GE++ ++S D
Sbjct: 120 SPPKVRPKKKVNTSQTVSPDEFEIMEKHDDDELEVPPMPKIENKEHIFGEIT---EKSKD 176
Query: 110 EFEVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIE 169
+FE + + +P EE +++R+ + +A Y F +D FQ+SS+
Sbjct: 177 QFEYARRLAISPE--EEQEYRRL----------------LPTMARKYPFSLDPFQQSSVL 218
Query: 170 AFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDN 229
RG S+ V+A TS+GKT++AE A A++ R YT+P+KALSNQKFR+F++ FGD
Sbjct: 219 CMERGESLFVAAHTSAGKTVVAEYAIALCQAHKTRAVYTSPIKALSNQKFRDFKQIFGD- 277
Query: 230 NVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDIS 289
VGL+TGD ++ EA LIMTTEILR+MLY ++ D++ +V DEVHY+++
Sbjct: 278 -VGLVTGDIQLHPEAACLIMTTEILRSMLYNGSEVIR------DLEWVVFDEVHYINNEE 330
Query: 290 RGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF- 347
RG VWEE++I P V+I+ LSATV N E A W+G+I + +I++ RRPVPL +
Sbjct: 331 RGHVWEEVLIMLPTHVKIVMLSATVPNCVEFADWVGRIKNRRINVISTDRRPVPLEHFLY 390
Query: 348 -----STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSN 402
T+ L ++D G+ + + Y S+ K Y+ S
Sbjct: 391 TGQDGKTQRDLFKIIDRNGQFILK----GYNDAKESKAKIYEKENSGAGGRGMVRGGGRG 446
Query: 403 NIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLE 462
+ N ++ ++ + ++ D LP + F+F+R+ CD Q L
Sbjct: 447 GGRGN--GGGGGGGGRNWPGKNDKNIYLNLINFMKCSDQLPMVVFVFSRKRCDDNAQMLS 504
Query: 463 DCNLLDECEMSEVE----LALKRFRILYPDAVREPAIKGL-LKGVAAHHAGCLPIWKSFI 517
NL E E V ++R + + + ++ L L+G A HH+G LPI K +
Sbjct: 505 SMNLTTEVEKQHVRSFFAQCIQRLKGSDKELPQVLTMRELCLRGFAVHHSGILPILKEVV 564
Query: 518 EELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRR 577
E LFQ+G VK++FATET A G+NMPAR V S+ K + + L E QMAGRAGRR
Sbjct: 565 ELLFQKGYVKILFATETFAMGVNMPARCVVFDSIMKHDGTEKRLLNPGEYTQMAGRAGRR 624
Query: 578 GIDNRGHVVLVQTPYEGAE-ECCKLLFAG-VEPLVSQFTASYGMVLNLL 624
G+D+ G VV++ + + K + G L S+F +Y M+LNLL
Sbjct: 625 GLDSTGTVVIICKDQSVPQPDILKNVICGQALRLESKFRVTYAMILNLL 673
>gi|149027987|gb|EDL83438.1| superkiller viralicidic activity 2-like, isoform CRA_c [Rattus
norvegicus]
Length = 1083
Score = 301 bits (771), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 192/482 (39%), Positives = 259/482 (53%), Gaps = 46/482 (9%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F D FQ+ +I + SV V+A TS+GKT++AE A + R YT+P+KALS
Sbjct: 143 WAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS 202
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY S + D++
Sbjct: 203 NQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLY------SGSDVIRDLE 254
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++ + +I
Sbjct: 255 WVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQIYVI 314
Query: 335 TSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ RPVPL Y T+ L LLD +G + Y +
Sbjct: 315 STVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAAVEA 360
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
++ KHA +FG Q + A R + L LR+R LP + F
Sbjct: 361 KKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LALLASLRTRAQLPVVVFT 409
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVA 503
F+R CD L +L E SE+ L L+R + R+ P + + L +G+
Sbjct: 410 FSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLRRGLG 469
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S L
Sbjct: 470 VHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLL 529
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M+LN
Sbjct: 530 PGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILN 589
Query: 623 LL 624
LL
Sbjct: 590 LL 591
>gi|393911807|gb|EFO22056.2| hypothetical protein LOAG_06429 [Loa loa]
Length = 1008
Score = 301 bits (771), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 176/481 (36%), Positives = 265/481 (55%), Gaps = 47/481 (9%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A +Y+F++D FQR +I SV+VSA TS+GKT++A A ++ +++R+ YT+P+K
Sbjct: 149 AKMYEFQLDAFQREAITCIDNSHSVLVSAHTSAGKTVVALYAIAMSLRDKQRVIYTSPIK 208
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE E FGD VGL+TGD+ +N +A ++MTTEILR+MLY+ ++
Sbjct: 209 ALSNQKYRELEEEFGD--VGLMTGDNTLNPDASCIVMTTEILRSMLYRGSEIMR------ 260
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A W+ +H +
Sbjct: 261 EVGWVIFDEIHYMRDKERGVVWEETIILLPDTVHYVFLSATIPNARQFADWVVYLHDQPV 320
Query: 332 ELITSSRRPVPLTW--YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
+I + RPVPL Y + + L +++ +G K +
Sbjct: 321 HVIYTDYRPVPLQHFIYPAGGSGLYEVVNMQGIFREDKFT-------------------- 360
Query: 390 RRNSRKHADMNSNNIVTSFGQ-HQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
+ N+++ G N S P V++ + L+ RDM+P I F
Sbjct: 361 ----------EAMNVLSQVGDAGHGGINKGKKGGTSGTPHVVNIIRTLKERDMIPVIIFS 410
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVA 503
F+R+ C+A + + + E E ++V E+ + +L + + P I LL+G+
Sbjct: 411 FSRKECEAYATQMTNLDFNTEDEKAKVKEIFVNAISLLSDEDSKLPEIGRVLPLLLRGIG 470
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K IE LF GL+K +FATET A G+NMPART + +S K +T
Sbjct: 471 VHHSGLLPIVKEVIEILFGEGLIKTLFATETFAMGLNMPARTVLFTSARKFDGKDYRWIT 530
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
S E QM+GRAGRRG D+RG V+L+ G + +++ +PL SQF +Y MVLNL
Sbjct: 531 SGEYIQMSGRAGRRGKDDRGLVILMVDQQMGQDVAKQIIKGAPDPLNSQFRLTYNMVLNL 590
Query: 624 L 624
L
Sbjct: 591 L 591
>gi|388582489|gb|EIM22794.1| antiviral helicase [Wallemia sebi CBS 633.66]
Length = 1264
Score = 301 bits (771), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 185/503 (36%), Positives = 269/503 (53%), Gaps = 34/503 (6%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V ++A Y F++D FQ++++ G SV V+A TS+GKT++AE A + R YT
Sbjct: 286 VPDMAIKYPFKLDHFQQNAVYHLEMGDSVFVAAHTSAGKTVVAEYAIALAAKHMTRTIYT 345
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQK+R+F+ TF VG+LTGD IN E LIMTTEILR+MLY+ ++
Sbjct: 346 SPIKALSNQKYRDFKTTFDPATVGILTGDVQINPEGSCLIMTTEILRSMLYKGADLIR-- 403
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ +V DEVHY++D RG VWEE+II P+ + II LSATV NA E A W+G+
Sbjct: 404 ----DVEFVVFDEVHYVNDAERGVVWEEVIIMLPEHINIILLSATVPNAKEFADWVGRTK 459
Query: 329 GKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGK-----HMNRKLSLNYLQLSTSE--- 379
K +I++ +RPVPL + + ++D GK H + +L Q E
Sbjct: 460 RKNIYVISTPKRPVPLEHHLFAGKEIHKIVDAGGKFLSSGHRDATDALRRKQDKEREAAG 519
Query: 380 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ------------VP 427
+ P + R + + G + +IN+ +SQ
Sbjct: 520 LPPVQKASGGPRGGGRGGGRGGGRTPANMGATG-AHRAINSYNKSQGANRGGGNASSGGN 578
Query: 428 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILY 486
Q + +L+ +D+LP + F F++R C+ L +LL E SEV + ++R L
Sbjct: 579 QNHHLVQYLKKKDLLPVVIFTFSKRKCEEHASGLGGMDLLSAAEKSEVHITVERSISRLR 638
Query: 487 PDAVREPAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 542
+ P I + LL +G+A HH G LPI K +E LF RGLVKV+FATET A G+NMP
Sbjct: 639 GSDKQLPQISRMRDLLGRGLAVHHGGLLPIVKEIVELLFGRGLVKVLFATETFAMGVNMP 698
Query: 543 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 602
AR+ S + K L E QM+GRAGRRG+D G V+++ + +
Sbjct: 699 ARSVAFSGIRKHDGKSFRDLLPGEYTQMSGRAGRRGLDATGVVIIMTNDNIPETTTLQQM 758
Query: 603 FAGVE-PLVSQFTASYGMVLNLL 624
G+ L SQF ++ ++LNLL
Sbjct: 759 ILGIPGKLNSQFRLTFNLILNLL 781
>gi|148694810|gb|EDL26757.1| mCG15924, isoform CRA_f [Mus musculus]
Length = 1099
Score = 301 bits (771), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 262/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I + SV V+A TS+GKT++AE A + R YT
Sbjct: 289 IPQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 348
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 349 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 404
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++
Sbjct: 405 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLK 460
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 461 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY------------- 507
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 508 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 555
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 556 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 615
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 616 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 675
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 676 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 735
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 736 TYTMILNLL 744
>gi|47087109|ref|NP_998724.1| superkiller viralicidic activity 2-like (S. cerevisiae ) [Rattus
norvegicus]
gi|46237592|emb|CAE83970.1| superkiller viralicidic activity 2-like (S. cerevisiae) [Rattus
norvegicus]
Length = 1241
Score = 301 bits (770), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 262/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I + SV V+A TS+GKT++AE A + R YT
Sbjct: 294 IPQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 353
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 354 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 409
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++
Sbjct: 410 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLK 465
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 466 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY------------- 512
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 513 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LALLASLRTRAQ 560
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 561 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 620
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 621 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 680
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 681 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 740
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 741 TYTMILNLL 749
>gi|321262386|ref|XP_003195912.1| RNA helicase; Ski2p [Cryptococcus gattii WM276]
gi|317462386|gb|ADV24125.1| RNA helicase, putative; Ski2p [Cryptococcus gattii WM276]
Length = 1202
Score = 301 bits (770), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 208/603 (34%), Positives = 302/603 (50%), Gaps = 83/603 (13%)
Query: 78 DDDIDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAPSWREEFK------WQR 131
D+D+D D + A D+ DD + +P PS +++FK W
Sbjct: 234 DEDVDGIDLKPAHPSDKDI-----------DDLLPIGRLPAP-PSSKKQFKAVAKKDWAH 281
Query: 132 VEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIA 191
V + ++ F +E+ V E+A Y F +D FQ+ ++ G SV V+A TS+GKT++A
Sbjct: 282 VVDVNQKLDNF-SEL--VPEMAKEYPFELDNFQKEAVYRLELGDSVFVAAHTSAGKTVVA 338
Query: 192 EAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTT 251
E A + + YT+P+KALSNQKFR+F+ TF + VG+LTGD IN E LIMTT
Sbjct: 339 EYAIALAAKHMTKAIYTSPIKALSNQKFRDFKTTFEPSTVGILTGDVQINAEGSCLIMTT 398
Query: 252 EILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311
EILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V II LS
Sbjct: 399 EILRSMLYKGADLIR------DVEFVIFDEVHYVNDAERGVVWEEVIIMLPEHVNIILLS 452
Query: 312 ATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 370
ATV N E A W+G+ K +I++ RPVPL + ++ + K + S
Sbjct: 453 ATVPNTKEFADWVGRTKKKDIYVISTPMRPVPLEHFLWAGRETHKIVSSQSKFLMEGYSS 512
Query: 371 NYLQLSTSEVKPYKDGG---SRRRNSRKHADMNSNNIVTS----FGQHQLSKNSINAIRR 423
L + K + G +R R A + S ++ T F + +N N
Sbjct: 513 ASDALRRKQDKEREANGLPPLQRTGGRGGAPVKSKDLPTGKNAPFTRVGAGRNHTNRGGG 572
Query: 424 SQVPQ-------------------------VID-TLW-----HLRSRDMLPAIWFIFNRR 452
+ PQ V+D +W +L+ +LP + F+F+++
Sbjct: 573 NGPPQAAFGGGRGGRGGSRGGFGGSSRPSHVLDQNIWTHLISYLKKNTLLPVVNFVFSKK 632
Query: 453 GCDAAVQYLEDCNLLDEC---EMSEV----ELALKRFR---ILYPDAVREPAIKGLLKGV 502
C+ Q L LD C E SEV E AL R + P +R + G +G+
Sbjct: 633 RCEEYAQTLS----LDLCTAKEKSEVHITWERALTRLKGEDKNLPQILRMRELLG--RGI 686
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH G LP+ K +E LF RGLVKV+FATET A G+NMPA++ V S + K + L
Sbjct: 687 GVHHGGLLPLVKEVVEILFARGLVKVLFATETFAMGVNMPAKSVVFSGIRKHDGTSFRNL 746
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQT-PYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
E QMAGRAGRRG+D G V+++ EE +++ L SQF +Y M+L
Sbjct: 747 LPGEYTQMAGRAGRRGLDTTGTVIILSGDELPSVEELNEMMLGVPNRLSSQFRLTYNMIL 806
Query: 622 NLL 624
NLL
Sbjct: 807 NLL 809
>gi|19552703|ref|NP_600705.1| helicase [Corynebacterium glutamicum ATCC 13032]
gi|62390371|ref|YP_225773.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
13032]
gi|21324257|dbj|BAB98882.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
ATCC 13032]
gi|41325708|emb|CAF21497.1| Superfamily II DNA and RNA helicase [Corynebacterium glutamicum
ATCC 13032]
gi|385143613|emb|CCH24652.1| putative helicase [Corynebacterium glutamicum K051]
Length = 929
Score = 301 bits (770), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 184/496 (37%), Positives = 262/496 (52%), Gaps = 47/496 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ E + F +D+FQ A V+V APT +GKT++ E A ++ + FYT
Sbjct: 11 LSEFIADLGFDLDEFQIKGCHAVEEDHGVLVCAPTGAGKTIVGEFAVSLALSRGTKCFYT 70
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + G + VGLLTGD +IN +A I++MTTE+LRNM+Y +
Sbjct: 71 TPIKALSNQKYHDLVAKHGSDAVGLLTGDVSINHDADIVVMTTEVLRNMIY------AGS 124
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L + +V+DE+H+L+D SRG VWEE+I+ V II LSATV+N++E W+ +
Sbjct: 125 FALERLSHVVMDEIHFLADASRGAVWEEVILNLDDSVNIIGLSATVSNSEEFGEWLTTVR 184
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVK----P 382
G T +I + RPVPL Y + ++PL E G +N++L +L++ + +
Sbjct: 185 GDTRVIVTDHRPVPLDQYMMVQRKVMPLF-EPGTDGRVNKELEATIDRLNSKQSEQGRAA 243
Query: 383 YKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y+ G G R R+ D + L + P+V+ L + +M
Sbjct: 244 YRSGEGFRARSKGDKQDSRTGKPREQDRHRPLGR-----------PEVLSIL---KGINM 289
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPA----- 494
LPAI FIF+R GCD A+ L+ D+ E E+ RI+ V P
Sbjct: 290 LPAITFIFSRAGCDGALYQCLRSKLVLTDQAESEEIA------RIVDAGVVGIPEEDLQV 343
Query: 495 ------IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
L++G AAHHAG LP ++ +EELF +GLV+ VFATETLA GINMPART VL
Sbjct: 344 LNFKQWRAALMRGFAAHHAGMLPAFRHIVEELFVKGLVRAVFATETLALGINMPARTVVL 403
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
+ K G + LT + Q+ GRAGRRGID G+ V+ +P L P
Sbjct: 404 EKMVKFDGEGHVDLTPGQYTQLTGRAGRRGIDVLGNAVVQWSPALDPRWVAGLASTRTYP 463
Query: 609 LVSQFTASYGMVLNLL 624
L+S F Y M +NLL
Sbjct: 464 LISTFQPGYNMSVNLL 479
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 14/216 (6%)
Query: 955 TEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI---NTQVIFPLGETA 1011
T E++ R + +LT +++ + + F RI +++ E +D + VI GE
Sbjct: 708 TAERMIRKERDLAKLTGNVDKARETLGRTFERILSLLSEMDYVDYSNPDNPVITDEGERL 767
Query: 1012 AAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN 1071
A I E +L +A L+ I +L PA+LA V + E + + + + +
Sbjct: 768 AKIHSEADLLVAQCLKRGIWDNLDPAELAGVVSMCTFENRR----ETGGEAQAVTEAMAD 823
Query: 1072 VINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDD 1126
+N ++ +E + +H + I ++ F+ + WASG M A L
Sbjct: 824 SMNSVERIWGELVEDERRHRLPITRQPEAGFATAIHQWASGAPLGYCMAAAAENGAELTP 883
Query: 1127 GDLARLLRRTIDLLAQIPKLPDVDQ--RLQKNAVDA 1160
GD R R+ IDLL Q+ K D+ R + A+DA
Sbjct: 884 GDFVRWCRQVIDLLEQVAKTAYFDETTRNARQAIDA 919
>gi|395832055|ref|XP_003789093.1| PREDICTED: helicase SKI2W [Otolemur garnettii]
Length = 1246
Score = 301 bits (770), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 193/489 (39%), Positives = 260/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I R +SV V+A TS+GKT++AE A + R YT
Sbjct: 300 IPQPAFQWPFEPDVFQKQAILHLERHNSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 359
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 360 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 415
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 416 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 471
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 472 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY------------- 518
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q A R + L LR R
Sbjct: 519 -YAAVEAKKERMSKHAQ--------TFGAKQPMHQGGPAQDRGVY---LSLLASLRVRAQ 566
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 687 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 746
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 747 TYTMILNLL 755
>gi|149027986|gb|EDL83437.1| superkiller viralicidic activity 2-like, isoform CRA_b [Rattus
norvegicus]
Length = 1236
Score = 301 bits (770), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 262/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I + SV V+A TS+GKT++AE A + R YT
Sbjct: 289 IPQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 348
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 349 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 404
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++
Sbjct: 405 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLK 460
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 461 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY------------- 507
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 508 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LALLASLRTRAQ 555
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 556 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 615
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 616 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 675
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 676 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 735
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 736 TYTMILNLL 744
>gi|2944423|gb|AAC05282.1| hypothetical protein [Mus musculus]
gi|148694805|gb|EDL26752.1| mCG15924, isoform CRA_a [Mus musculus]
Length = 1236
Score = 301 bits (770), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 262/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I + SV V+A TS+GKT++AE A + R YT
Sbjct: 289 IPQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 348
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 349 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 404
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++
Sbjct: 405 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLK 460
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 461 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY------------- 507
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 508 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 555
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 556 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 615
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 616 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 675
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 676 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 735
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 736 TYTMILNLL 744
>gi|26325700|dbj|BAC26604.1| unnamed protein product [Mus musculus]
Length = 1244
Score = 301 bits (770), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 262/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I + SV V+A TS+GKT++AE A + R YT
Sbjct: 297 IPQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 356
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 357 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 412
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++
Sbjct: 413 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLK 468
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 469 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY------------- 515
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 516 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 563
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 564 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 623
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 624 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 683
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 684 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 743
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 744 TYTMILNLL 752
>gi|379709524|ref|YP_005264729.1| putative ATP-DEPENDENT DNA HELICASE HELY [Nocardia cyriacigeorgica
GUH-2]
gi|374847023|emb|CCF64093.1| putative ATP-DEPENDENT DNA HELICASE HELY [Nocardia cyriacigeorgica
GUH-2]
Length = 899
Score = 301 bits (770), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 200/524 (38%), Positives = 271/524 (51%), Gaps = 59/524 (11%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
++D ++ FR+D FQ+ + A G SV+V APT +GKT++ E A +A + FY
Sbjct: 10 ELDSFSAELTFRLDPFQQQACRALEEGHSVLVCAPTGAGKTVVGEFAVHLALATGGKCFY 69
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQKF + +G VGLLTGD +IN A +++MTTE+LRNMLY +S
Sbjct: 70 TTPIKALSNQKFADLTARYGRAKVGLLTGDQSINSNAPVVVMTTEVLRNMLY------AS 123
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
L + +V+DEVHYL+D RG VWEE I++ EV+++ LSATV+NA+E W+ +
Sbjct: 124 SDALHALSYVVMDEVHYLADRFRGAVWEEAILHLSPEVRLVSLSATVSNAEEFGAWMETV 183
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G T ++ RPVPL + + L D ++SE K D
Sbjct: 184 RGDTAVVVDETRPVPLWQHVMVGRRMFDLFDS----------------NSSEQKVLVDED 227
Query: 388 -SRRRNSRKHAD-MNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
R R+ AD MN S+G + R P+V L L +LPAI
Sbjct: 228 LVRYIRHRESADRMN------SWGGPRGRGGGRRDFRPLPRPEV---LAKLDEEGLLPAI 278
Query: 446 WFIFNRRGCDAAV-QYLED-CNLLDECEMSEVELALKRFRILYPDAVREPA-----IKGL 498
FIF+R GCD A+ Q L +L + +V+ +++ P A E + L
Sbjct: 279 TFIFSRAGCDGALAQCLRSGLDLGRGQDQEQVDAIIEKHTGELPKADLEVLGYWEWREAL 338
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+AAHHAG LP ++ +EELF GLV+ VFATETLA GINMPART VL L K
Sbjct: 339 HRGLAAHHAGMLPAFRHTVEELFVNGLVRAVFATETLALGINMPARTVVLERLVKYNGES 398
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+LT E Q+ GRAGRRGID GH V++ P L PL S F Y
Sbjct: 399 HAELTPGEYTQLTGRAGRRGIDVEGHAVVLWQPEVDTSAVAGLASTRTYPLRSSFRPGYN 458
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ D M A EAR L+E+SF +
Sbjct: 459 MSINLI------------DRMGA-------AEARALLERSFAQF 483
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 12/198 (6%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL + + +++ S + F RI ++ E R ++ + G A I
Sbjct: 683 ERYARLSRETDTMRQKVAATTNSLARTFDRILGLLEE-RGF-VHEGEVTQDGRRLARIYA 740
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVIN-VINV 1075
E++L +A LR + L PA+LAAV + LV E + + S EP + + V
Sbjct: 741 ESDLLVAECLRQGLWRGLGPAELAAVVSILVYESRQEGGYLGASGPTEPVRRAVGATVAV 800
Query: 1076 LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-----DCALDDGDLA 1130
+ R+ + +H + D + WA G E ++ L GD
Sbjct: 801 WSQLRTD----EARHKLAPTREPDLGIVTGIHTWARGDGLAESLLASGDQGAPLSAGDFV 856
Query: 1131 RLLRRTIDLLAQIPKLPD 1148
R R+ IDLL QI D
Sbjct: 857 RWCRQVIDLLDQIHSTAD 874
>gi|148694809|gb|EDL26756.1| mCG15924, isoform CRA_e [Mus musculus]
Length = 1239
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 262/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I + SV V+A TS+GKT++AE A + R YT
Sbjct: 292 IPQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 351
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 352 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 407
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++
Sbjct: 408 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLK 463
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 464 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY------------- 510
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 511 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 558
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 559 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 618
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 619 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 678
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 679 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 738
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 739 TYTMILNLL 747
>gi|74204725|dbj|BAE35430.1| unnamed protein product [Mus musculus]
Length = 1244
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 262/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I + SV V+A TS+GKT++AE A + R YT
Sbjct: 297 IPQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 356
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 357 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 412
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++
Sbjct: 413 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLK 468
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 469 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY------------- 515
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 516 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 563
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 564 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 623
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 624 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 683
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 684 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 743
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 744 TYTMILNLL 752
>gi|87252727|ref|NP_067312.2| superkiller viralicidic activity 2-like [Mus musculus]
gi|42406362|gb|AAH65999.1| Superkiller viralicidic activity 2-like (S. cerevisiae) [Mus
musculus]
Length = 1244
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 262/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I + SV V+A TS+GKT++AE A + R YT
Sbjct: 297 IPQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 356
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 357 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 412
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++
Sbjct: 413 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLK 468
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 469 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY------------- 515
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 516 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 563
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 564 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 623
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 624 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 683
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 684 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 743
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 744 TYTMILNLL 752
>gi|403511534|ref|YP_006643172.1| DEAD/DEAH box helicase family protein [Nocardiopsis alba ATCC
BAA-2165]
gi|402799821|gb|AFR07231.1| DEAD/DEAH box helicase family protein [Nocardiopsis alba ATCC
BAA-2165]
Length = 947
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 195/561 (34%), Positives = 283/561 (50%), Gaps = 65/561 (11%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
++ +Y F D FQ + +A G V+V+APT SGKT++ E A + + FYT
Sbjct: 22 IEAFQGLYGFEFDPFQIKACKALEGGHGVLVAAPTGSGKTVVGEFAVHLALNEGTKCFYT 81
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + +G VGLLTGD+++N EA +++MTTE+LRNMLY+
Sbjct: 82 TPIKALSNQKYNDLVARYGAEQVGLLTGDNSVNGEAPVVVMTTEVLRNMLYE------GS 135
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
S L + +V+DEVHYL+D RG VWEE+II+ P+ V+++ LSATV+NA+E W+ Q+
Sbjct: 136 STLGGLAYVVMDEVHYLADRFRGAVWEEVIIHLPESVRMVALSATVSNAEEFGEWLQQVR 195
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPL-LDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G T +I +RPVPL + + L +D++ + + S + + +
Sbjct: 196 GDTTIIVDEKRPVPLWQHVMVGKRMHDLFVDQEAESTEEGDEGSEGGRSRRKRERRRSHQ 255
Query: 388 SRRRN--------------SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV-----PQ 428
R R SR + + + +H S+ N R++ P
Sbjct: 256 QRPREIRVGGRTLLINPFLSRAAEEDARTTQLANRRRHPQSRARGNVRPRTRFAPPSRPM 315
Query: 429 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL----DECEMSEVELALKR--- 481
+I+ L + +LPAI FIF+R GCD AV+ L+ DE ++ E A R
Sbjct: 316 IIE---ELDAEGLLPAITFIFSRAGCDDAVRQCVASGLVLTTPDEADVIR-EYAESRCAD 371
Query: 482 -----FRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA 536
+L D+ ++ L G+A+HHAG LP +K +E LF RGL++ VFATETLA
Sbjct: 372 IPRADLNVLGFDSW----LRALESGIASHHAGMLPTFKEVVEHLFSRGLIRAVFATETLA 427
Query: 537 AGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE 596
GINMPART V+ L K LT E Q+ GRAGRRGID GH V++ E
Sbjct: 428 LGINMPARTVVIEKLDKWNGETHASLTPGEYTQLTGRAGRRGIDVEGHAVVIWQAGTDPE 487
Query: 597 ECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVE 656
L PL S F SY M +NL+ Q GR +R ++E
Sbjct: 488 SVASLAGTRTYPLNSSFQPSYNMAVNLVG-----------------QVGR--RRSRAMLE 528
Query: 657 QSFGNYVGSNVMLAAKDELCK 677
SF + ++ +L K
Sbjct: 529 ASFAQFQADRAVVGLVKKLRK 549
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 7/210 (3%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ R K + L +R+E + F R+ V+ + L ++ + G A I
Sbjct: 736 ERYHRTKKDTDALRRRVEGRSHVISRTFDRVCGVLEDLEYLSGDS--VSEDGGRLAKIYS 793
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076
E +L +A LR + DL P +AAV ASLV E + ++ P V + +
Sbjct: 794 ELDLLVAECLRRGVWKDLTPVDMAAVAASLVYEARR----GDDPYPRVPEGRVEEALQEM 849
Query: 1077 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 1136
E++ +H V D F WA G ++ + GD R +
Sbjct: 850 LRLWGELNEVETRHRVSFLRQPDLGFVWTAHRWARGDRLDAILSRTEMTAGDFVRTAKML 909
Query: 1137 IDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
+D+L QI + DQ+++ NA A++++ R
Sbjct: 910 VDMLGQI-AVAATDQQVRSNARKAADLVRR 938
>gi|348576448|ref|XP_003473999.1| PREDICTED: helicase SKI2W-like [Cavia porcellus]
Length = 1243
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 189/482 (39%), Positives = 259/482 (53%), Gaps = 46/482 (9%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F D FQ+ +I + +SV V+A TS+GKT++AE A + R YT+P+KALS
Sbjct: 304 WPFEPDVFQKQAILHLEQHNSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS 363
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++ D++
Sbjct: 364 NQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLE 415
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
++ DEVHY++D RG VWEE++I P V I+ LSATV NA E A WIG++ + +I
Sbjct: 416 WVIFDEVHYINDAERGVVWEEVLIMLPDHVSIVLLSATVPNALEFADWIGRLKRRQIYVI 475
Query: 335 TSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ RP+PL Y T+ L LLD +G + Y +
Sbjct: 476 STLTRPIPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY--------------YAAVEA 521
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
++ KHA +FG Q + A R + L LR+R LP + F
Sbjct: 522 KKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFT 570
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVA 503
F+R CD L +L E SE+ L L+R + R+ P + + L +G+
Sbjct: 571 FSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHRGLG 630
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K S L
Sbjct: 631 VHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSAFRDLL 690
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
E QMAGRAGRRG+D G V+L+ + + +++ L SQF +Y M+LN
Sbjct: 691 PGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILN 750
Query: 623 LL 624
LL
Sbjct: 751 LL 752
>gi|86170414|ref|XP_966011.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
gi|46362253|emb|CAG25191.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
Length = 1350
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 183/480 (38%), Positives = 258/480 (53%), Gaps = 40/480 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ+ SIE R SV+VSA TS+GKT+IAE A + +++R+ YT+P+K
Sbjct: 248 ARTYKFELDTFQKKSIECLERNESVLVSAHTSAGKTVIAEYAIALGLRDKQRVIYTSPIK 307
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+R+ E F D VGL+TGD +IN EA I++MTTEILR+MLY+ +
Sbjct: 308 ALSNQKYRDLGEEFKD--VGLITGDISINPEASIIVMTTEILRSMLYRGSSLTK------ 359
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
+V ++ DE+HY+ D RG +WEE II P V+ I LSAT+ N + A W+ I +
Sbjct: 360 EVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIKSQAC 419
Query: 332 ELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
++ + RP PL Y + T + + L+ ++ K KD +
Sbjct: 420 HIVYTDYRPTPLQHYIYPTSSESVFLICDENKDFK------------------KDNFIKA 461
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
N K MN+ + HQ N R + + SR+ P I F F+
Sbjct: 462 VNVIKEK-MNT----SEENHHQQHINKYTKKMRKTTYDIEKIVQMCHSRNYTPLIIFAFS 516
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVAAH 505
++ C+ + +L + E + EL RIL D P ++ LL+G+ H
Sbjct: 517 KKECEVNATAMHKIDLTSDTEKEVIKELYENAIRILADDDRSLPQVQFILPLLLRGIGIH 576
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
H G LPI K IE +FQ L+KV+F+TET + GINMPA+T V +SL+K + +TS
Sbjct: 577 HGGLLPIIKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVVFTSLTKFDGLEKRLITSG 636
Query: 566 ELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QMAGRAGRRG+D+RG V +++ TP E KL LVSQF Y M+LNLL
Sbjct: 637 EYIQMAGRAGRRGLDDRGIVIIMLDTPLHW-REAHKLFVGEANRLVSQFHLGYNMILNLL 695
>gi|312079065|ref|XP_003142013.1| hypothetical protein LOAG_06429 [Loa loa]
Length = 1043
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 176/481 (36%), Positives = 265/481 (55%), Gaps = 47/481 (9%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A +Y+F++D FQR +I SV+VSA TS+GKT++A A ++ +++R+ YT+P+K
Sbjct: 149 AKMYEFQLDAFQREAITCIDNSHSVLVSAHTSAGKTVVALYAIAMSLRDKQRVIYTSPIK 208
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE E FGD VGL+TGD+ +N +A ++MTTEILR+MLY+ ++
Sbjct: 209 ALSNQKYRELEEEFGD--VGLMTGDNTLNPDASCIVMTTEILRSMLYRGSEIMR------ 260
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A W+ +H +
Sbjct: 261 EVGWVIFDEIHYMRDKERGVVWEETIILLPDTVHYVFLSATIPNARQFADWVVYLHDQPV 320
Query: 332 ELITSSRRPVPLTW--YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
+I + RPVPL Y + + L +++ +G K +
Sbjct: 321 HVIYTDYRPVPLQHFIYPAGGSGLYEVVNMQGIFREDKFT-------------------- 360
Query: 390 RRNSRKHADMNSNNIVTSFGQ-HQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
+ N+++ G N S P V++ + L+ RDM+P I F
Sbjct: 361 ----------EAMNVLSQVGDAGHGGINKGKKGGTSGTPHVVNIIRTLKERDMIPVIIFS 410
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVA 503
F+R+ C+A + + + E E ++V E+ + +L + + P I LL+G+
Sbjct: 411 FSRKECEAYATQMTNLDFNTEDEKAKVKEIFVNAISLLSDEDSKLPEIGRVLPLLLRGIG 470
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K IE LF GL+K +FATET A G+NMPART + +S K +T
Sbjct: 471 VHHSGLLPIVKEVIEILFGEGLIKTLFATETFAMGLNMPARTVLFTSARKFDGKDYRWIT 530
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
S E QM+GRAGRRG D+RG V+L+ G + +++ +PL SQF +Y MVLNL
Sbjct: 531 SGEYIQMSGRAGRRGKDDRGLVILMVDQQMGQDVAKQIIKGAPDPLNSQFRLTYNMVLNL 590
Query: 624 L 624
L
Sbjct: 591 L 591
>gi|148694808|gb|EDL26755.1| mCG15924, isoform CRA_d [Mus musculus]
Length = 1241
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 262/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I + SV V+A TS+GKT++AE A + R YT
Sbjct: 294 IPQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 353
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 354 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 409
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++
Sbjct: 410 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLK 465
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 466 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY------------- 512
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 513 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 560
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 561 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 620
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 621 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 680
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 681 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 740
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 741 TYTMILNLL 749
>gi|149027985|gb|EDL83436.1| superkiller viralicidic activity 2-like, isoform CRA_a [Rattus
norvegicus]
Length = 1103
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 262/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I + SV V+A TS+GKT++AE A + R YT
Sbjct: 289 IPQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 348
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 349 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 404
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++
Sbjct: 405 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLK 460
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 461 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY------------- 507
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 508 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LALLASLRTRAQ 555
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 556 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 615
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 616 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 675
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 676 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 735
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 736 TYTMILNLL 744
>gi|148694814|gb|EDL26761.1| mCG15924, isoform CRA_i [Mus musculus]
Length = 1256
Score = 300 bits (769), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 262/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I + SV V+A TS+GKT++AE A + R YT
Sbjct: 309 IPQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 368
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 369 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 424
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A WIG++
Sbjct: 425 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLK 480
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 481 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGY------------- 527
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 528 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 575
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 576 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 635
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 636 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 695
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 696 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 755
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 756 TYTMILNLL 764
>gi|297677763|ref|XP_002816718.1| PREDICTED: helicase SKI2W isoform 1 [Pongo abelii]
Length = 1244
Score = 300 bits (768), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 202/525 (38%), Positives = 275/525 (52%), Gaps = 53/525 (10%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 269 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 323
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 324 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 381
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D RG
Sbjct: 382 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDAERGV 435
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 436 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 495
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G K Y ++N +HA
Sbjct: 496 SSKTQGELFLLLDSRGAF---------------HTKGYYAAVEAKKNE-QHAQ------- 532
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 533 -TFGAKQPTHPVGPAQDRG---VYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 588
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 589 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 648
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 649 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 708
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 709 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 753
>gi|345569679|gb|EGX52544.1| hypothetical protein AOL_s00043g38 [Arthrobotrys oligospora ATCC
24927]
Length = 1244
Score = 300 bits (768), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 189/507 (37%), Positives = 264/507 (52%), Gaps = 44/507 (8%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V +A + F +D FQ+ ++ G SV V+A TS+GKT++AE A + + YT
Sbjct: 278 VPNMAREWTFELDNFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYT 337
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR F D VG+LTGD IN EA LIMTTEILR+MLY+ ++
Sbjct: 338 SPIKALSNQKFRDFRNIFDD--VGILTGDVQINPEASCLIMTTEILRSMLYRGADLIR-- 393
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D RG VWEE+II P V +I LSATV N E A W+G+
Sbjct: 394 ----DVEFVIFDEVHYVNDQERGVVWEEVIIMLPDHVNLILLSATVPNTQEFASWVGRTK 449
Query: 329 GK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKL-SLNYLQLSTSEVKPYKD- 385
K +I++ +RPVPL Y + ++D+ K + L N + +P +
Sbjct: 450 KKDIYVISTPKRPVPLEHYLWAGKKMHKIVDQNKKFLETGLRDANEAMSGKKDERPNQSV 509
Query: 386 -------------GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 432
GG R S+ N++ S N R+ Q
Sbjct: 510 PTRGNISQRGGQRGGPNHRGSQSARGGRGGNVMRG-ASGAASFNRGGRGGRTTANQ-DKN 567
Query: 433 LW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE-------VELALK 480
LW HL+ D+LP F+F+++ C+ L + LD C +E VE ++
Sbjct: 568 LWVHLVQHLKKEDLLPGCIFVFSKKRCEENADALSN---LDYCTANEKSAIHMIVEKSIA 624
Query: 481 RFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 539
R RI + ++ LL +G+A HH G LPI K +E LF + LVKV+FATET A G+
Sbjct: 625 RLRIEDRQLPQIRRLRDLLSRGIAVHHGGLLPIVKEMVEILFAKSLVKVLFATETFAMGL 684
Query: 540 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG--AEE 597
N+P RT V S + K L S E QMAGRAGRRG+D+ G V++V E A
Sbjct: 685 NLPTRTVVFSGIRKHDGRSFRDLLSGEYIQMAGRAGRRGLDSSGTVIIVGNGDEAPPAGT 744
Query: 598 CCKLLFAGVEPLVSQFTASYGMVLNLL 624
++ L SQF +Y M+LNLL
Sbjct: 745 LKTMILGQPTKLQSQFRLTYNMILNLL 771
>gi|344234464|gb|EGV66332.1| hypothetical protein CANTEDRAFT_100985 [Candida tenuis ATCC 10573]
Length = 1212
Score = 300 bits (768), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 206/577 (35%), Positives = 294/577 (50%), Gaps = 44/577 (7%)
Query: 80 DIDDDDDEEAADEYDDVSGEVSDEIQQSD-------------DEFE--VSSDSSP----- 119
D+D +EEA +YD G+ DEI ++ DE + VS D +
Sbjct: 173 DLDSKQEEEAEKDYD--IGDREDEITTNNSSKEEPISLSVDTDEIDGLVSIDYAAIRADI 230
Query: 120 APSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVV 179
A + W V L ++V++F V +A + F +D FQ+ ++ +G SV V
Sbjct: 231 AKEKEAKKSWAHVVDLGHKVQDFEEV---VPNMARKWPFELDTFQQEAVYHLEQGDSVFV 287
Query: 180 SAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSA 239
+A TS+GKT++AE A N + YT+P+KALSNQKFR+F+ETF D +VGL+TGD
Sbjct: 288 AAHTSAGKTVVAEYAIAMAARNMTKAIYTSPIKALSNQKFRDFKETFTDIDVGLITGDVQ 347
Query: 240 INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIII 299
IN EA LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++DI RG VWEE+II
Sbjct: 348 INPEANCLIMTTEILRSMLYKGADLIR------DVEFVIFDEVHYVNDIDRGVVWEEVII 401
Query: 300 YCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLD 358
P+ ++ I LSATV N E A W+G+ K +I++ +RPVPL K L +D
Sbjct: 402 MLPEHIKYILLSATVPNTFEFANWVGRTKQKDIYVISTPKRPVPLEISVWAKENLYKAID 461
Query: 359 EKGKHMNRKLSLNYLQLSTSEVKP----YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLS 414
K + + L L S+ K + G R N + G
Sbjct: 462 ASRKFSETEFKKHKLALEGSDKKKAPSVVEGYGQRGGPGGSARGGNRSVARGGRGGRGGG 521
Query: 415 KNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE 474
N R + +L+ +LPA+ F+F++ C+ + L + E SE
Sbjct: 522 ANGRPGRDRPNKNTWSQLVSYLKKNTLLPAVIFVFSKVRCEEYAETLSGVDFCTAKEKSE 581
Query: 475 VELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVV 529
+ + + R RE P I + L +G+A HH G LPI K FIE LF + LVKV+
Sbjct: 582 IHMFIDRSVSRLKKEDRELPQILKIRELLGRGIAVHHGGLLPIVKEFIEILFAKTLVKVL 641
Query: 530 FATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV- 588
FATET A G+N+P RT V S L K L E QM+GRAGRRG+D G V+++
Sbjct: 642 FATETFAMGLNLPTRTVVFSELRKHDGVNFRNLLPGEFTQMSGRAGRRGLDPTGTVIVMA 701
Query: 589 -QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
P + ++ L+SQF +Y M+LNLL
Sbjct: 702 YNQPLTMG-DFKEVTLGTPTKLISQFRLTYNMILNLL 737
>gi|209877104|ref|XP_002139994.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209555600|gb|EEA05645.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 1447
Score = 300 bits (768), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 184/525 (35%), Positives = 279/525 (53%), Gaps = 52/525 (9%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A +Y F++D FQ SIE G S++VSA TS+GKT +AE A + + +R+ YT+P+K
Sbjct: 176 AKVYSFKLDTFQAVSIECLEIGESILVSAHTSAGKTCVAEYAIAMALRSNQRVVYTSPIK 235
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+R+ R TFGD NVGLLTGD +N A I++MTTEILR+MLY+ +V
Sbjct: 236 ALSNQKYRDLRSTFGDGNVGLLTGDVTVNPLASIMVMTTEILRSMLYRGSELVR------ 289
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKT 331
++ ++ DE+HY+ D RG VWEE II P V+++ LSAT+ N E A WI + H
Sbjct: 290 EIAWVIFDEIHYMRDKERGVVWEESIILLPDTVRLVFLSATIPNHLEFAEWICRTKHQPC 349
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RPVPL + + T + ++DE + N +L+ L+L+T E + + G
Sbjct: 350 HVVYTDYRPVPLQHFVFPAGGTGVYLVMDENKIFREDNYSKALSSLKLTTEE-RSNRVGE 408
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+++N+R ++ NIV + R+ LP I F
Sbjct: 409 FKKKNTRSQLRIDLENIVN----------------------------MCQERNYLPIIVF 440
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGV 502
F+++ C+ YL +L + E ++ + + R P + G+L +G+
Sbjct: 441 SFSKKDCETNAMYLGSTDLTNSEEKESIDFIFQSALATLAEEDRNIPQVVGMLPLLRRGI 500
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH G LP+ K +E LF +KV+F+TET + GINMPA+T + +SL K +
Sbjct: 501 GIHHGGLLPVVKEIVEILFGESFIKVLFSTETFSMGINMPAKTVIFTSLRKFDGKESRLI 560
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV--SQFTASYGMV 620
S E QM+GRAGRRG+D+RG + ++ + K +F G +PL SQF Y M+
Sbjct: 561 NSGEFIQMSGRAGRRGLDDRG-LTIIMLDEQADPWAVKAIFTG-DPLRIDSQFYIGYNML 618
Query: 621 LNL--LAGAKVMHLSNES-DDMKALQAGRSLEEARKLVEQSFGNY 662
LNL L GA ++ S + SL E +K +E+ Y
Sbjct: 619 LNLLRLEGADPEYMIQRSFSQFLKRRKTVSLNEEKKRIEKIISKY 663
>gi|395737037|ref|XP_003776851.1| PREDICTED: helicase SKI2W isoform 2 [Pongo abelii]
Length = 1144
Score = 300 bits (768), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 203/525 (38%), Positives = 275/525 (52%), Gaps = 53/525 (10%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 169 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 223
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 224 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 281
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY S + D++ ++ DEVHY++D RG
Sbjct: 282 LLTGDVQLHPEASCLIMTTEILRSMLY------SGSDVIRDLEWVIFDEVHYINDAERGV 335
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 336 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 395
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G K Y ++N +HA
Sbjct: 396 SSKTQGELFLLLDSRGAF---------------HTKGYYAAVEAKKNE-QHAQ------- 432
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 433 -TFGAKQPTHPVGPAQDRG---VYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 488
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 489 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 548
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 549 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 608
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 609 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 653
>gi|291516885|emb|CBK70501.1| Superfamily II RNA helicase [Bifidobacterium longum subsp. longum
F8]
Length = 863
Score = 300 bits (768), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 190/498 (38%), Positives = 269/498 (54%), Gaps = 61/498 (12%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + +A GS+V+V+APT +GKT++A+ A + FYTTP+KALSNQ
Sbjct: 45 FELDDFQTEANDALEAGSNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKALSNQ 104
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + + +G + VGLLTGD++IN EA I++MTTE+LRNMLY V S + L + +
Sbjct: 105 KYHDLVDVYGPDKVGLLTGDTSINSEADIVVMTTEVLRNMLY-----VRSTT-LNALRYV 158
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
+LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 159 ILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVISE 218
Query: 338 RRPVPLTWYF------STKTALLPLLDEKGK-----HMNRKLSLNYLQLSTSEVKPYKDG 386
RPVPL + T+ +L L G +N +L QL
Sbjct: 219 HRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQLD---------- 268
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR-RSQVPQ---VIDTLWHLRSRDML 442
R+ +R+ + + +A + P+ V+D L L ML
Sbjct: 269 ---RKAARRRGEERPDKRKGFGRGRGGKGAKGHAPKAERHTPRRWAVVDELNFL---GML 322
Query: 443 PAIWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAV 490
P I+FIF+R GCD AV+ + L DE EM E +L + + L
Sbjct: 323 PGIYFIFSRNGCDQAVEQCINAGLELTTDEEVTKIRRIVDEMVEGQLTQEDLKALQFSKF 382
Query: 491 REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
R L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+
Sbjct: 383 R----FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEK 438
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGV 606
L K +G + LT E Q+ GRAGRRGID GH ++V P A K ++
Sbjct: 439 LEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY--- 495
Query: 607 EPLVSQFTASYGMVLNLL 624
PL S F ++ M +NLL
Sbjct: 496 -PLHSSFRPTFNMAVNLL 512
>gi|149732068|ref|XP_001492630.1| PREDICTED: helicase SKI2W [Equus caballus]
Length = 1246
Score = 300 bits (768), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 260/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I R SV V+A TS+GKT++AE A + R YT
Sbjct: 300 IPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 359
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TF D VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 360 SPIKALSNQKFRDFRNTFAD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 415
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 416 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 471
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 472 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY------------- 518
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 519 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 566
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 687 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 746
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 747 TYTMILNLL 755
>gi|402590817|gb|EJW84747.1| hypothetical protein WUBG_04342, partial [Wuchereria bancrofti]
Length = 743
Score = 300 bits (767), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 187/494 (37%), Positives = 265/494 (53%), Gaps = 44/494 (8%)
Query: 116 DSSPAPSWREEFKWQRVE----KLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAF 171
++ P+ S ++E + Q E + N K + +A Y F +D FQ+ ++
Sbjct: 265 EAEPSSSGKDELQVQNREYSYAHVLNTSKNVDEYEVLKSNMARKYPFELDPFQQQAVICL 324
Query: 172 LRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNV 231
RG SV V+A TS+GKT++AE A ++ R YT+P+KALSNQKFREF+ F D V
Sbjct: 325 DRGDSVFVAAHTSAGKTVVAEYAVALCNLHKTRAIYTSPIKALSNQKFREFKLIFQD--V 382
Query: 232 GLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRG 291
GL+TGD ++ EA LIMTTE+LR+MLY ++ +++ ++ DEVHY++D RG
Sbjct: 383 GLITGDIQLHPEAFCLIMTTEVLRSMLYNGSEVIR------ELEWVIFDEVHYINDAERG 436
Query: 292 TVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF--- 347
VWEE++I P +I+ LSATV N E A W+G+I K +IT++RRPVPL +
Sbjct: 437 HVWEEVLIMLPAHAKIVMLSATVPNCVEFADWVGRIKKKRIYVITTARRPVPLEHFLYTG 496
Query: 348 ---STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNI 404
TK + ++D G+ + + SL +T G R NN
Sbjct: 497 QDGKTKKDMFKIIDSSGQFVQKGYSLASAAKATIRKAIANVGPVGYR---------PNNK 547
Query: 405 VTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC 464
+ S+ ++ ++ I + HLR ++MLP I F+F+RR CD L
Sbjct: 548 ILSYLKNSYDDKNV----------YITVIDHLRMQNMLPVIVFVFSRRRCDDNAYLLRSV 597
Query: 465 NLLDECEMSEVE----LALKRFRILYPDAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEE 519
+L E E S + + R R + + +K L K G A HH+G LPI K +E
Sbjct: 598 DLTTEKEKSSIHHFFLRCIARLRGSDKNLPQVLQMKELCKHGFAIHHSGILPILKEVVEL 657
Query: 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 579
LFQ+GLVKV+FATET A G+NMPART + SL K L E QMAGRAGRRG+
Sbjct: 658 LFQKGLVKVLFATETFAMGVNMPARTVIFDSLQKHDGRQLRLLNPGEYIQMAGRAGRRGL 717
Query: 580 DNRGHV-VLVQTPY 592
D G V VL + PY
Sbjct: 718 DATGSVIVLCKGPY 731
>gi|290977274|ref|XP_002671363.1| predicted protein [Naegleria gruberi]
gi|284084931|gb|EFC38619.1| predicted protein [Naegleria gruberi]
Length = 1130
Score = 300 bits (767), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 199/530 (37%), Positives = 284/530 (53%), Gaps = 52/530 (9%)
Query: 107 SDDEFEVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRS 166
S D EVSS+ PS F ++ ++ E G + + A Y F +D FQR
Sbjct: 132 SVDGSEVSSNVLSNPSEIVNFMMEQKTQV-----ELG-----LKQAAKEYPFTLDAFQRQ 181
Query: 167 SIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETF 226
++ A SV+VSA TS+GKT +AE A ++ + R+ YT+P+KALSNQKFRE +E F
Sbjct: 182 AVRAIELSQSVLVSAHTSAGKTAVAEYAIAKSLKDGSRVIYTSPIKALSNQKFRELQEEF 241
Query: 227 GDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286
D VGL+TGD IN + ++MTTEILR+MLY+ + L +V ++ DEVHY+
Sbjct: 242 TD--VGLMTGDVTINPNSSCIVMTTEILRSMLYRGSEI------LNEVQWVIFDEVHYMR 293
Query: 287 DISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTW 345
D RG VWEE +I P V+ + LSAT+ NA E AGWI ++ G+ ++ + RP PL
Sbjct: 294 DKERGVVWEETLILLPNSVKYVFLSATMPNATEFAGWIAKLKGQPVHVVYTDYRPTPLQH 353
Query: 346 YFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
Y + P + +G H+ + T + +K N+ K+ V
Sbjct: 354 Y------IYP-VGGQGIHL-------VVDKHTFKQDNWKKAVEELNNASKN--------V 391
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDT-----LWHLRSRDMLPAIWFIFNRRGCDAAVQY 460
TS G + NS + + +DT + + R+ P I F F+R+ C+
Sbjct: 392 TSGGSGSGNVNSSGKVSGGDRKKRVDTSLVKLVNMIMKRNFQPVIVFSFSRKECETRAVS 451
Query: 461 LEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KGVAAHHAGCLPIWKS 515
L N DE EMS V E+ L + + P ++ +L KG+ HH+G LPI K
Sbjct: 452 LSKSNFNDEEEMSLVAEVFNNAIDSLSDEDRKLPQVETMLPLLQKGIGVHHSGLLPIMKE 511
Query: 516 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAG 575
IE LFQ GL+KV+FATET A G+NMPA+T + + + K +LTS E QM+GRAG
Sbjct: 512 VIEILFQEGLIKVLFATETFAMGLNMPAKTVLFTGIEKYDGQITRRLTSGEYIQMSGRAG 571
Query: 576 RRGIDNRGHVVLVQTPYEGAEECCKLLFAGV-EPLVSQFTASYGMVLNLL 624
RRG+D++G V+L+ + EE K L G+ + L S F SY MVLNLL
Sbjct: 572 RRGLDDKGIVILIMDDPDLREEDAKQLMNGIADCLNSSFHLSYYMVLNLL 621
>gi|452821286|gb|EME28318.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 1062
Score = 300 bits (767), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 229/658 (34%), Positives = 324/658 (49%), Gaps = 89/658 (13%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQR SI R SV+VSA TS+GKT IAE A ++ + +R+ YT+P+K
Sbjct: 134 AKEYKFTLDAFQRESIRCLERNESVLVSAHTSAGKTAIAEYAVAMSLRDGQRVIYTSPIK 193
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE E F D VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 194 ALSNQKYRELYEEFID--VGLMTGDVTINPSAGCLVMTTEILRSMLYRGSEVIR------ 245
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P+ V+ + LSAT+ NA E A WI Q+ +
Sbjct: 246 EVAWVIFDEVHYMRDKERGVVWEETIIMVPENVRFVFLSATIPNAREFAEWIVQLKNQPC 305
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
I + RPVPL Y + L ++DEKG+ + T E K G +
Sbjct: 306 HTIYTDSRPVPLQHYLFPAGGDGLYLVVDEKGQFRD----------DTFEKALSKIGENS 355
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
+++ K A+MN N + G S V ++I + R+ P I F F
Sbjct: 356 IKDTSKGAEMNKKNKKAAKGA-------------SDVYRIIKLIME---REYDPVIVFAF 399
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAIKGLL----KGVAA 504
+RR C+A L L + + S VE + + L D + P I L +G+
Sbjct: 400 SRRECEALALQLSKLELNTDEQKSLVEQVFVNAMDSLSEDDKKLPQITAALPLLKRGIGI 459
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K E LFQ GL+KV+FATET A G+NMPA+T V +++ K ++
Sbjct: 460 HHSGLLPILKEVTEILFQEGLIKVLFATETFAMGLNMPAKTVVFTAVRKFDGEAFRFISG 519
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D RG +L E +L +PL S F Y M+LNLL
Sbjct: 520 GEYIQMSGRAGRRGLDERGISILTVDERIQPETARAILKGNADPLRSSFHLEYNMLLNLL 579
Query: 625 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDV 684
+ S + QA R+L + N N +L KDEL KI E DV
Sbjct: 580 RSEEANPEYVISRSLAQFQADRALPD----------NEAKLNELLRQKDEL-KISMEDDV 628
Query: 685 LTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILK 744
KE A +++L +R R+++R + F A K++L
Sbjct: 629 -----------------------KEFAAYKDQL---ERLRSKVRNIV----FQA-KNVLP 657
Query: 745 DFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQS 802
+ G L C+Q K+ V + F +++S++K + D F ++ L S
Sbjct: 658 FLQVGRLARFCVQDKEVRDFGWGV----VVNFTKMNTSQVKEQG-LRDKFLIDALVFS 710
>gi|395533841|ref|XP_003768961.1| PREDICTED: helicase SKI2W [Sarcophilus harrisii]
Length = 1249
Score = 300 bits (767), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 191/489 (39%), Positives = 261/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I R SV V+A TS+GKT++AE A + R YT
Sbjct: 303 IPQPAFQWPFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 362
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 363 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 418
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 419 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 474
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I+++ RPVPL + T+ L LLD +G +
Sbjct: 475 RRHLYVISTAARPVPLEHFLFTGNSPKTQGELFLLLDSRGVFHTKGY------------- 521
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ + KHA +FG Q R + L LRSR
Sbjct: 522 -YAAVEAKKERTSKHAQ--------TFGAKQPMHQGGPGQDRG---IYLSLLASLRSRAQ 569
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 570 LPVVVFTFSRGRCDEQASGLSSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 629
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 630 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 689
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
+ L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 690 ATFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMLGKPSQLQSQFRL 749
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 750 TYTMILNLL 758
>gi|115395946|ref|XP_001213612.1| hypothetical protein ATEG_04434 [Aspergillus terreus NIH2624]
gi|114193181|gb|EAU34881.1| hypothetical protein ATEG_04434 [Aspergillus terreus NIH2624]
Length = 1298
Score = 300 bits (767), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 199/600 (33%), Positives = 297/600 (49%), Gaps = 64/600 (10%)
Query: 71 DEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAPSWREE---F 127
DEA + + + +D++E + + +D+ + E F +P S ++
Sbjct: 241 DEATSDIEGGVKIEDEDELSGDEEDIDALLPVE-------FPALEPRAPLLSGIQKKGGR 293
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V + ++ FG + D +A + F +D FQ+ ++ G SV V+A TS+GK
Sbjct: 294 EWAHVVDVNKDIPNFGELVPD---MAREWPFELDTFQKEAVYHLESGDSVFVAAHTSAGK 350
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A + + YT+P+KALSNQKFR+FR TF D VG+LTGD IN EA L
Sbjct: 351 TVVAEYAIALAAKHMTKAIYTSPIKALSNQKFRDFRNTFDD--VGILTGDVQINPEASCL 408
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D+ RG VWEE+II P+ V +
Sbjct: 409 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTL 462
Query: 308 ICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366
I LSATV N E A W+G+ K +I++++RPVPL Y ++D + +
Sbjct: 463 ILLSATVPNTYEFASWVGRTKKKDIYVISTAKRPVPLEHYLWAGKDKFKIVDSNKRFLEN 522
Query: 367 --KLSLNYLQ---------------------LSTSEVKPYKDGGSRRRNSRKHADMNSNN 403
K + N + + G + R A NS
Sbjct: 523 GWKEADNVISGRDKIKAQKAAEAQAQSQAQRGGPQGRGRGQAAGRGQAPGRGGARGNSQR 582
Query: 404 IVTSFGQHQLSKNSINAIRRSQVPQVI------DTLW-----HLRSRDMLPAIWFIFNRR 452
G+ Q S I R+ T+W HLR ++LP F+F+++
Sbjct: 583 GGAPRGRGQPSNRGTGNIARTGRGGGRTTAAQDKTIWVQLVQHLRKENLLPGCIFVFSKK 642
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL----KGVAAHHA 507
C+ L + + + E S + + + K L P+ P I+ L +G+A HH
Sbjct: 643 RCEENADSLSNQDFCNASEKSLIHMFIEKSLTRLKPEDRDLPQIRRLRDLLSRGIAVHHG 702
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
G LPI K +E LF + LVKV+FATET A G+N+P RT V S K G L E
Sbjct: 703 GLLPIMKEIVEILFAKSLVKVLFATETFAMGLNLPTRTVVFSGFRKHDGKGFRDLLPGEY 762
Query: 568 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC---KLLFAGVEPLVSQFTASYGMVLNLL 624
QMAGRAGRRG+D G+V++V + A +++ L SQF +Y M+LNLL
Sbjct: 763 TQMAGRAGRRGLDTVGYVIIVSVGKDEAPPAAALRRMILGDPTKLRSQFRLTYNMILNLL 822
>gi|221058304|ref|XP_002261660.1| ATP-dependant RNA helicase [Plasmodium knowlesi strain H]
gi|194247665|emb|CAQ41065.1| ATP-dependant RNA helicase, putative [Plasmodium knowlesi strain H]
Length = 1332
Score = 300 bits (767), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 181/481 (37%), Positives = 262/481 (54%), Gaps = 42/481 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ+ SIE R SV+VSA TS+GKT+IAE A + +++R+ YT+P+K
Sbjct: 224 ARTYKFELDTFQKKSIECLERNESVLVSAHTSAGKTVIAEYAIALGLRDKQRVIYTSPIK 283
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+R+ E F D VGL+TGD +IN +A I++MTTEILR+MLY+ +
Sbjct: 284 ALSNQKYRDLSEEFKD--VGLITGDISINPDASIIVMTTEILRSMLYRGSSLTK------ 335
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
+V ++ DE+HY+ D RG +WEE II P V+ I LSAT+ N + A W+ I +
Sbjct: 336 EVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIKSQAC 395
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y ++ ++ + DE N+ N + + +K
Sbjct: 396 HIVYTDYRPTPLQHYIYPTSSESVFLICDE-----NKDFKKNNFIKAVNAIKE------- 443
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL-RSRDMLPAIWFI 448
NN+ S HQ + NS + R + I+ + + SR+ P I F
Sbjct: 444 -----------KNNM--SEDTHQQNGNSRHNRRTKKNVHDIEKIVQMCHSRNYTPLIIFA 490
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVA 503
F+++ C+ + +L D+ E + EL +IL D P ++ LL+G+
Sbjct: 491 FSKKECEVNATTMHKVDLTDDTEKEVIKELYENAIQILADDDRALPQVQFILPLLLRGIG 550
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH G LPI K IE +FQ L+KV+F+TET + GINMPA+T V +SL K + +T
Sbjct: 551 IHHGGLLPIIKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVVFTSLRKFDGVEKRLIT 610
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
S E QMAGRAGRRG+D+RG V+++ E KL LVSQF Y M+LNL
Sbjct: 611 SGEYIQMAGRAGRRGLDDRGIVIIMLDSPLHWREAEKLFVGEANRLVSQFHLGYNMILNL 670
Query: 624 L 624
L
Sbjct: 671 L 671
>gi|452957431|gb|EME62798.1| dead/deah box helicase [Rhodococcus ruber BKS 20-38]
Length = 909
Score = 299 bits (766), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 192/525 (36%), Positives = 272/525 (51%), Gaps = 63/525 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A+ F +D FQ + A G V+V APT +GKT++ E A + + FYTTP
Sbjct: 20 EFAAELPFPLDPFQVQACRALEGGHGVLVCAPTGAGKTVVGEFAVHLALRAGSKCFYTTP 79
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+ + +G VGLLTGD ++N +A +++MTTE+LRNMLY +S +
Sbjct: 80 IKALSNQKYADLVARYGKAAVGLLTGDQSVNPDAPVVVMTTEVLRNMLY------ASSTT 133
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DEVH+L+D RG VWEE+I++ P++V+++ LSATV+NA+E W+ + G
Sbjct: 134 LIGLTHVVMDEVHFLADRFRGAVWEEVILHLPEDVRLVSLSATVSNAEEFGDWMETVRGD 193
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
T ++ RP+PL H + + L S P G+ R
Sbjct: 194 TTVVVDEVRPIPL-------------------HQHVMVGPRIFDLFESAAHPDAADGTGR 234
Query: 391 R----NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
R N + + S G+ + I R P+V+ L +LPAI
Sbjct: 235 RGVVVNRELVEQVRRRAALDSAGRWGGPRGRIG-FRPLPRPEVVA---RLDREGLLPAIT 290
Query: 447 FIFNRRGCDAAV-QYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKG------- 497
F+F+R GCDAAV Q L +L E E++++ + P A E + G
Sbjct: 291 FVFSRAGCDAAVGQCLRAGLHLTSEYEIAQIRAVVDEHTGDLPRADLE--VLGFREWRAA 348
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
L +G+AAHHAG LP ++ +E+LF RGLV+ VFATETLA GINMPART VL L K
Sbjct: 349 LERGIAAHHAGMLPAFRHTVEDLFVRGLVRAVFATETLALGINMPARTVVLEKLVKYNGE 408
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
+LT E Q+ GRAGRRGID GH V++ P + L PL S F SY
Sbjct: 409 THAELTPGEYTQLTGRAGRRGIDIEGHAVVLWQPGLEPTDVAGLASTRTFPLRSSFRPSY 468
Query: 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ D + A E +R L+E+SF +
Sbjct: 469 NMAVNLI------------DAVGA-------EHSRALLERSFAQF 494
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 1067
GE A I E++L +A LR+++ L PA+LAAV +++V E +V + ++ Y P+
Sbjct: 743 GERLARIYSESDLLVAECLRHRVWAGLSPAELAAVVSAVVYEA-RV---EEGATEYGPTG 798
Query: 1068 ----TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA 1123
+ + + + + R+ + + E D F + W S + E ++
Sbjct: 799 PLRRALADTVRLCGQLRADEVRFKLPPTREP----DPGFVDAIYTWVSTQSLTEALLAAG 854
Query: 1124 -----LDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 1166
L GD R R+ IDLL QI + VD ++ K A A + R
Sbjct: 855 SAGRDLSAGDFVRWCRQVIDLLDQI-RTGAVDPQIAKTAARAIGAIRR 901
>gi|126309591|ref|XP_001369051.1| PREDICTED: helicase SKI2W [Monodelphis domestica]
Length = 1249
Score = 299 bits (766), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 191/489 (39%), Positives = 261/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I R SV V+A TS+GKT++AE A + R YT
Sbjct: 303 IPQPAFQWPFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 362
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 363 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 418
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 419 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 474
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I+++ RPVPL + T+ L LLD +G +
Sbjct: 475 RRHLYVISTAARPVPLEHFLFTGNSPKTQGELFLLLDSRGIFHTKGY------------- 521
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ + KHA +FG Q R + L LRSR
Sbjct: 522 -YAAVEAKKERTSKHAQ--------TFGAKQPMHQGGPGQDRG---IYLSLLASLRSRAQ 569
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 570 LPVVVFTFSRGRCDEQASGLSSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 629
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 630 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 689
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
+ L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 690 ATFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMLGKPSQLQSQFRL 749
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 750 TYTMILNLL 758
>gi|291395821|ref|XP_002714338.1| PREDICTED: superkiller viralicidic activity 2-like homolog
[Oryctolagus cuniculus]
Length = 1246
Score = 299 bits (766), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 260/489 (53%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I + SV V+A TS+GKT++AE A + R YT
Sbjct: 300 IPQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 359
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 360 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 415
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 416 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 471
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 472 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY------------- 518
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q A R + L LR+R
Sbjct: 519 -YAAVEAKKERMSKHAQ--------TFGAKQPMHQGGPAQDRGVY---LSLLASLRTRAQ 566
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 687 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 746
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 747 TYTMILNLL 755
>gi|407279624|ref|ZP_11108094.1| dead/deah box helicase [Rhodococcus sp. P14]
Length = 909
Score = 299 bits (765), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 191/525 (36%), Positives = 271/525 (51%), Gaps = 63/525 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E + F +D FQ + A G V+V APT +GKT++ E A + + FYTTP
Sbjct: 20 EFTAGLPFPLDPFQVQACRALEGGHGVLVCAPTGAGKTVVGEFAVHLALRAGSKCFYTTP 79
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+ + +G VGLLTGD ++N +A +++MTTE+LRNMLY +S +
Sbjct: 80 IKALSNQKYADLVARYGKAAVGLLTGDQSVNPDAPVVVMTTEVLRNMLY------ASSTT 133
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DEVH+L+D RG VWEE+I++ P++V+++ LSATV+NA+E W+ + G
Sbjct: 134 LIGLTHVVMDEVHFLADRFRGAVWEEVILHLPEDVRLVSLSATVSNAEEFGDWMETVRGD 193
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
T ++ RP+PL H + + L S P G+ R
Sbjct: 194 TAVVVDEVRPIPL-------------------HQHVMVGPRIFDLFESAAHPDAADGTGR 234
Query: 391 R----NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
R N + + S G+ + I R P+V+ L +LPAI
Sbjct: 235 RGVVVNRELVEQVRRRAALDSAGRWGGPRGRIG-FRPLPRPEVVA---RLDREGLLPAIT 290
Query: 447 FIFNRRGCDAAV-QYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKG------- 497
F+F+R GCDAAV Q L +L E E++++ + P A E + G
Sbjct: 291 FVFSRAGCDAAVGQCLRAGLHLTSEAEIAQIRAVVDEHTGDLPRADLE--VLGFREWRAA 348
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
L +G+AAHHAG LP ++ +E+LF RGLV+ VFATETLA GINMPART VL L K
Sbjct: 349 LERGIAAHHAGMLPAFRHTVEDLFVRGLVRAVFATETLALGINMPARTVVLEKLVKYNGE 408
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
+LT E Q+ GRAGRRGID GH V++ P + L PL S F SY
Sbjct: 409 THAELTPGEYTQLTGRAGRRGIDVEGHAVVLWQPGLEPADVAGLASTRTFPLRSSFRPSY 468
Query: 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
M +NL+ D + A E +R L+E+SF +
Sbjct: 469 NMAVNLI------------DAVGA-------EHSRALLERSFAQF 494
>gi|426250501|ref|XP_004018974.1| PREDICTED: LOW QUALITY PROTEIN: helicase SKI2W [Ovis aries]
Length = 1245
Score = 299 bits (765), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 259/489 (52%), Gaps = 47/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I R SV V+A TS+GKT++AE A + R YT
Sbjct: 300 IPQPAFKWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 359
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 360 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 415
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 416 ----DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 471
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 472 RRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGY------------- 518
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R ++ +L R
Sbjct: 519 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVYLSLLASL----RRPR 565
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA----IKG 497
LP + F F+R CD L +L E SE+ L L+R + R P +
Sbjct: 566 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRRPPQVLHMSE 625
Query: 498 LL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
LL +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 626 LLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 685
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 686 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 745
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 746 TYTMILNLL 754
>gi|348519375|ref|XP_003447206.1| PREDICTED: helicase SKI2W isoform 2 [Oreochromis niloticus]
Length = 1225
Score = 299 bits (765), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 192/494 (38%), Positives = 268/494 (54%), Gaps = 65/494 (13%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F +D FQ+ ++ SV V+A TS+GKT++AE A + + R YT+P+KALS
Sbjct: 313 WPFELDVFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMTRTIYTSPIKALS 372
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQKFR+F+ TFGD VGLLTGD ++ E+ LIMTTEILR+MLY ++ D++
Sbjct: 373 NQKFRDFKNTFGD--VGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVIR------DLE 424
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
++ DEVHY++D RG VWEE++I P V II LSATV NA E + WIG+I + +I
Sbjct: 425 WVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRHIYVI 484
Query: 335 TSSRRPVPLTWYF----STKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ +RPVPL Y STKT + LLD G + + Y +
Sbjct: 485 STLKRPVPLEHYLYTGNSTKTQKEMFLLLDATGNFLTKGY--------------YTAVDA 530
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
++ + KHA SFG S+N+ A +R Q P + F
Sbjct: 531 KKERTSKHAQ--------SFGTKNTSQNT-TASQRQQTP----------------VVAFT 565
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEV----ELALKRFRILYPDAVREPAIKGLLK-GVA 503
F+R CD + L+ +L E +E+ + +L R R + ++ LLK G+A
Sbjct: 566 FSRTRCDDNARSLDSMDLTTSIEKAEIHSFFQKSLTRLRGGDRQLPQILLMRDLLKRGIA 625
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K IE LF RGLVKV+FATET A G+NMPART V S+ K +G L
Sbjct: 626 VHHSGILPILKEVIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLL 685
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL---LFAGVEPLVSQFTASYGMV 620
E QMAGRAGRRG+D G V+++ G E L + L SQF +Y M+
Sbjct: 686 PGEYIQMAGRAGRRGLDATGTVIILCK--AGVHEMADLHAMMLGKPTLLQSQFRLTYTMI 743
Query: 621 LNLLAGAKVMHLSN 634
LNLL + +H+++
Sbjct: 744 LNLLR-VEALHVTD 756
>gi|123399499|ref|XP_001301484.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121882670|gb|EAX88554.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 963
Score = 299 bits (765), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 267/480 (55%), Gaps = 42/480 (8%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
YDF +D+FQ++++ R SV+VSA TS+GKT IA A + + + R+ YT+P+KALS
Sbjct: 53 YDFELDEFQKTAVACVHRNESVLVSAHTSAGKTAIALYAIQSAINSNSRVIYTSPIKALS 112
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+RE +E FG+ VGL+TGD +N A IL+MTTEILR MLY+ +S + ++
Sbjct: 113 NQKYRELKEQFGE--VGLITGDVTVNSSAPILVMTTEILRMMLYRG------DSLIHELS 164
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
++ DE+HY+ D RG VWEE II P V + LSAT+ NA E + WI IH + ++
Sbjct: 165 WVIYDEIHYMKDPERGVVWEESIIMLPDSVHFVFLSATIPNAREFSEWISSIHHQPCHVV 224
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
++ RP PL +Y S+ + P L ++G+ L + + S+VKP +D
Sbjct: 225 YTNHRPTPLKFYISSNGSEAPALIKEGEG---PLDTVAVHTAYSKVKPEED--------- 272
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI-DTLWHLRSRDMLPAIWFIFNRRG 453
+I +L+ + R ++ +T L + D P I F F R+
Sbjct: 273 -------KSIYKGISVTKLNSGESKPVSRQTTDKLCAETAAWLVTHDQAPLIVFAFGRKL 325
Query: 454 CDAAVQYLEDCNLLDECEMSEV----ELALKRFRILYPDAVRE-PAIKG----LLKGVAA 504
CD L + + + E ++ ++A+++ D+ +E P I+ L++G+
Sbjct: 326 CDDLPTNLNGKSFVTQEESEQINQMIDVAIEKLE----DSEKELPQIQTMRNLLVRGIGV 381
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH G +P+ K IE LFQ GL+K++FATET A G+NMPAR+ + SL K R LTS
Sbjct: 382 HHGGLIPLLKELIELLFQYGLLKILFATETFAMGLNMPARSVLFHSLFKFDGDKRRLLTS 441
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+E QM+GRAGRR D G+V+L T C LL +PL S+F +Y M+L+LL
Sbjct: 442 SEFIQMSGRAGRRNNDRFGNVILTCTGEPQERPFCDLLTGIAQPLNSEFHVTYHMLLSLL 501
>gi|358447364|ref|ZP_09157889.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
gi|356606733|emb|CCE56249.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
Length = 945
Score = 298 bits (764), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 177/495 (35%), Positives = 261/495 (52%), Gaps = 27/495 (5%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
++E + +D FQ + EA G V+V APT +GKT++ E A ++ + FYT
Sbjct: 6 LEEFRASLSHPLDDFQVAGCEAVEEGHGVLVCAPTGAGKTIVGEFAVSLALSQGTKCFYT 65
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
TP+KALSNQK+ + G+ VGLLTGD +IN A+I++MTTE+LRNM+Y +
Sbjct: 66 TPIKALSNQKYHDLVAEHGERAVGLLTGDVSINGNAEIVVMTTEVLRNMIY------ADS 119
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+ L + +V+DE+H+L+D SRG VWEE+I+ + V II LSATV+N++E W+ +
Sbjct: 120 TALHRLTHVVMDEIHFLADASRGAVWEEVILNLDESVSIIGLSATVSNSEEFGDWLSTVR 179
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDE-KGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
G T +I S RPVPL + + P+ + G +N +L+ +L + + +D
Sbjct: 180 GDTRIIVSEHRPVPLDQWMLLGRKIFPMFEPGSGGQVNSELARRIARLESGSSEEGRDDY 239
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ-------VIDTLWHLRSRD 440
+ R A + + + PQ + L L+ ++
Sbjct: 240 KAGKGFRARARQQGRDGRDGRDDKDGRGHGHGGRSGAPRPQDRYRPLGRPEVLQILQGQN 299
Query: 441 MLPAIWFIFNRRGCDAAV-QYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIK--- 496
MLPAI FIF+R GC+ A+ Q L L E +E A+ + + + E ++
Sbjct: 300 MLPAITFIFSRAGCEGALYQCLRSRMSLTTPEEAEEIKAIVDAGV---EGIPEEDLQVLN 356
Query: 497 ------GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
L +G AAHHAG LP ++ +E+LF +GLV+ VFATETLA GINMPART VL
Sbjct: 357 FRQWRQALSRGFAAHHAGMLPAFRHIVEDLFVKGLVRAVFATETLALGINMPARTIVLEK 416
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 610
L K + LT + Q+ GRAGRRGID G+ V++ P + L PL+
Sbjct: 417 LIKFNGEAHVDLTPGQYTQLTGRAGRRGIDTIGNAVVMWAPAMDPRQVAGLASTRTYPLI 476
Query: 611 SQFTASYGMVLNLLA 625
S F Y M +NLL
Sbjct: 477 STFEPGYNMAINLLG 491
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 109/264 (41%), Gaps = 27/264 (10%)
Query: 908 VLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSK 967
VL + H E R ++A L +K+AR E ++ K++ +TV+ + + + R
Sbjct: 697 VLRDAIRLHPVHEWPATDREQLAGLAQKLARRE--RDLKRLTNTVERATDTLGKTFERIV 754
Query: 968 RLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLR 1027
L +++ +E G E T VI G+ A I E +L +A L+
Sbjct: 755 DLLAQMDYVEFEGLGED---------------RTPVITDEGQRLALIHNECDLLVAQCLK 799
Query: 1028 NKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQ 1087
+ DL PA+LA V + E K + + S + + +N + +
Sbjct: 800 RGVWDDLDPAELAGVVSMCSFENRK----ETSGSPEAATDRMAEAMNATLRIYTELTADE 855
Query: 1088 EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQ 1142
+ H + + + FS + WA+G M A L GD R R+ +DLL Q
Sbjct: 856 QLHKLPLTRQPEPGFSLALHQWAAGAPLGYCMSAAAESGADLTPGDFVRHCRQAVDLLQQ 915
Query: 1143 IPKLPDVDQRLQKNAVDASNVMDR 1166
+ K D+ L+ NA A + + R
Sbjct: 916 VAKTAYTDE-LKANARRAVDAIQR 938
>gi|315041214|ref|XP_003169984.1| hypothetical protein MGYG_08161 [Arthroderma gypseum CBS 118893]
gi|311345946|gb|EFR05149.1| hypothetical protein MGYG_08161 [Arthroderma gypseum CBS 118893]
Length = 1292
Score = 298 bits (764), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 216/612 (35%), Positives = 312/612 (50%), Gaps = 67/612 (10%)
Query: 69 DADEAADEYDDDIDDDDDEE--------AADEYDDVSGEVSDEIQQSDDEFEVSS---DS 117
D + A E ++++ +DD E + D S E D+ S+ E ++ +
Sbjct: 216 DEQQKAKEVREELEREDDTELKHLPSQDSRDATRQSSAEEGDQGSSSESEEDIDALLPVE 275
Query: 118 SPAPSWREEF----------KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSS 167
PA R E +W V + E+ F E+ V ++A Y F +D FQ+ +
Sbjct: 276 YPALEPRGELIQSSLKKSRKEWAHVVDVNKEITNF-YEL--VPDMAREYPFELDTFQKEA 332
Query: 168 IEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG 227
+ G SV V+A TS+GKT++AE A + + YT+P+KALSNQKFR+FR TF
Sbjct: 333 VYHLENGDSVFVAAHTSAGKTVVAEYAIALANKHMTKAIYTSPIKALSNQKFRDFRGTFD 392
Query: 228 DNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287
D VG+LTGD IN EA LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++D
Sbjct: 393 D--VGILTGDIQINPEASCLIMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVND 444
Query: 288 ISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWY 346
+ RG VWEE+II P+ V +I LSATV N E A W+G+ K +I++ +RPVPL Y
Sbjct: 445 LERGVVWEEVIIMLPEHVSLILLSATVPNTYEFASWVGRTKKKDIYVISTPKRPVPLEHY 504
Query: 347 FSTKTALLPLLD------EKG-KHMNRKLS-LNYLQLSTSEVKPYKDGGSRRRNSRKHAD 398
+ ++D EKG K + LS + ++ + GG + R
Sbjct: 505 LWAGKEIHKIVDAEKRFIEKGWKDTDDILSGRDKIKAQKAAEAQAARGGKQPERGRGQGQ 564
Query: 399 MNSNNIVTSF-------GQHQLSKNSINAIRRS----------QVPQV-IDTLWHLRSRD 440
S T G+ Q S I I R+ Q V + + +LR+R+
Sbjct: 565 RGSGQRGTGQRGGAQQRGRGQPSARGIGNIARTGRGGGRTSAAQDRNVWVHLVQYLRNRE 624
Query: 441 MLPAIWFIFNRRGCDAAVQYLED---CNLLDECEMSE-VELALKRFRILYPDAVREPAIK 496
MLPA F+F+++ C L + C D+ + VE +L R R+ D + ++
Sbjct: 625 MLPACIFVFSKKRCGENADSLSNQDFCTAADKSAIHMVVEKSLTRLRVEDRDLPQIRKVR 684
Query: 497 GLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
LL +GV HH G LPI K +E LF +GLVK++FATET A G+N+P RT V S K
Sbjct: 685 ELLSRGVGVHHGGLLPIVKEIVEILFAKGLVKILFATETFAMGLNLPTRTVVFSGYRKHD 744
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC---KLLFAGVEPLVSQ 612
L + E QMAGRAGRRG+D G V++V + + A K++ L SQ
Sbjct: 745 GRAFRDLLAGEYTQMAGRAGRRGLDTVGSVIIVTSGRDEAPPIAALRKMILGDPTKLRSQ 804
Query: 613 FTASYGMVLNLL 624
F +Y M+LNLL
Sbjct: 805 FRLTYNMMLNLL 816
>gi|409083626|gb|EKM83983.1| hypothetical protein AGABI1DRAFT_96933 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1103
Score = 298 bits (764), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 183/490 (37%), Positives = 261/490 (53%), Gaps = 20/490 (4%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V +A Y F +D FQ+ ++ G SV V+A TS+GKT++AE A + R YT
Sbjct: 199 VPAMAREYPFELDTFQKQAVYHLELGDSVFVAAHTSAGKTVVAEYAIGLAEKHMTRAIYT 258
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+F++TF ++VG+LTGD IN EA L+MTTEILR+MLY+ ++
Sbjct: 259 SPIKALSNQKFRDFKQTFSSSSVGILTGDVQINPEATCLVMTTEILRSMLYKGADLIR-- 316
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D RG VWEE+II P V II LSATV N E A W+G+
Sbjct: 317 ----DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTK 372
Query: 329 GK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
K +I++ +RPVPL Y ++D K ++ S L + K + G
Sbjct: 373 KKDIYVISTLQRPVPLEHYLYAGRDKFKIVDAKRTFLSNGYSDARDALRRKQDKEREAAG 432
Query: 388 -----SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ--VIDTLWHLRSRD 440
+ R +N+ ++ R + + L HL+ +
Sbjct: 433 LAPVQATRGRGASARGGGANSRGSTLATRGRGGRGGGPARTIHADKNVYVHLLGHLKKEN 492
Query: 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAI---K 496
+LP + F F+++ C+ + L + +L E SEV +A+ K L + P I +
Sbjct: 493 LLPVVIFTFSKKRCEENARTLMNADLCTSVEKSEVHVAIEKALSRLKGSDKKLPQIARMR 552
Query: 497 GLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
LL +G+ HH G LPI K +E LF RGLVKV+FATET A G+NMPA+ V S++ K
Sbjct: 553 DLLSRGIGIHHGGLLPIMKEVVEILFARGLVKVLFATETFAMGVNMPAKCVVFSNIRKHD 612
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFT 614
+ E QMAGRAGRRG+D G V +LV +L L+SQF
Sbjct: 613 GRNFRDILPGEYTQMAGRAGRRGLDTTGTVIILVGDSIPEQNTLHTMLLGTPGKLMSQFR 672
Query: 615 ASYGMVLNLL 624
+Y M+LNLL
Sbjct: 673 LTYNMILNLL 682
>gi|239621488|ref|ZP_04664519.1| DSH domain-containing protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|239515949|gb|EEQ55816.1| DSH domain-containing protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 863
Score = 298 bits (764), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 187/498 (37%), Positives = 268/498 (53%), Gaps = 61/498 (12%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + +A GS+V+V+APT +GKT++A+ A + FYTTP+KALSNQ
Sbjct: 45 FELDDFQIEANDALEAGSNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKALSNQ 104
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ + + G + VGLLTGD++IN EA I++MTTE+LRNMLY+ +++ + +
Sbjct: 105 KYHDLVDVCGPDKVGLLTGDTSINSEADIVVMTTEVLRNMLYERSTTLNA------LRYV 158
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS 337
+LDEVHYL+D RG VWEE+II+ PK V+I+ LSATV+N ++ + WI + G T+L+ S
Sbjct: 159 ILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVISE 218
Query: 338 RRPVPLTWYF------STKTALLPLLDEKGK-----HMNRKLSLNYLQLSTSEVKPYKDG 386
RPVPL + T+ +L L G +N +L QL
Sbjct: 219 HRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQLD---------- 268
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR-RSQVPQ---VIDTLWHLRSRDML 442
R+ +R+ + + +A + P+ V+D L L ML
Sbjct: 269 ---RKAARRRGEERPDKRKGFGRGRGGKGAKGHAPKAERHTPRRWAVVDELNFL---GML 322
Query: 443 PAIWFIFNRRGCDAAVQYLEDCNL---LDE---------CEMSEVELALKRFRILYPDAV 490
P I+FIF+R GCD AV+ + L DE EM E +L + + L
Sbjct: 323 PGIYFIFSRNGCDQAVEQCINAGLELTTDEEVTKIRRIVDEMVEGQLTQEDLKALQFSKF 382
Query: 491 REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
R L +G A+HHAG + +++ +E LF+ GLVK+VFATETLA GINMPAR V+
Sbjct: 383 R----FALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFATETLALGINMPARCVVVEK 438
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ----TPYEGAEECCKLLFAGV 606
L K +G + LT E Q+ GRAGRRGID GH ++V P A K ++
Sbjct: 439 LEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHGFVPATAAALSSKRVY--- 495
Query: 607 EPLVSQFTASYGMVLNLL 624
PL S F ++ M +NLL
Sbjct: 496 -PLHSSFRPTFNMAVNLL 512
>gi|296813017|ref|XP_002846846.1| antiviral helicase SKI2 [Arthroderma otae CBS 113480]
gi|238842102|gb|EEQ31764.1| antiviral helicase SKI2 [Arthroderma otae CBS 113480]
Length = 1288
Score = 298 bits (764), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 206/576 (35%), Positives = 300/576 (52%), Gaps = 47/576 (8%)
Query: 81 IDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAPSWREEFKWQRVEKLCNEVK 140
+D+D D A+++ +D+ + E + ++ SS S +E W V + E+
Sbjct: 252 VDEDKDNSASEDEEDIDALLPVEYPALEPRGQLIQ-SSLKKSRKE---WAHVVDVNKEIT 307
Query: 141 EFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA 200
F E+ V ++A Y F +D FQ+ ++ G SV V+A TS+GKT++AE A
Sbjct: 308 NF-YEL--VPDMAREYPFELDIFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALANK 364
Query: 201 NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQ 260
+ + YT+P+KALSNQKFR+FR TF D VG+LTGD IN EA LIMTTEILR+MLY+
Sbjct: 365 HMTKAIYTSPIKALSNQKFRDFRGTFDD--VGILTGDIQINPEASCLIMTTEILRSMLYR 422
Query: 261 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 320
++ DV+ ++ DEVHY++D+ RG VWEE+II P+ V +I LSATV N E
Sbjct: 423 GADLIR------DVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVSLILLSATVPNTYEF 476
Query: 321 AGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLS-LNYLQLSTS 378
A W+G+ K +I++ +RPVPL Y + ++D + + + + +
Sbjct: 477 ASWVGRTKKKDIYVISTPKRPVPLEHYLWAGKEIHKVVDADKRFIEKGWKDADDILSGRD 536
Query: 379 EVKPYK----DGGSRRRNSRKHADMNSNNIVTSF-------GQHQLSKNSINAIRRS--- 424
+VK K GG + R T G+ Q S I R+
Sbjct: 537 KVKAQKAAEAQGGKQPERGRGQNQRGGGQRGTGQRGGPQQRGRGQPSTRGTGNIARTGRG 596
Query: 425 -------QVPQV-IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED---CNLLDECEMS 473
Q V + + +LR R+MLPA F+F+++ C L + C D+ +
Sbjct: 597 GGRTSAAQDRNVWVHLVQYLRKREMLPACIFVFSKKRCGENADSLSNQDFCTASDKSAIH 656
Query: 474 E-VELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 531
VE +L R R D + ++ LL +GV HH G LPI K +E LF +GLVK++FA
Sbjct: 657 MIVEKSLTRLRAEDRDLPQIRKVRELLSRGVGVHHGGLLPIVKEIVEILFAKGLVKILFA 716
Query: 532 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591
TET A G+N+P RT V S K G L + E QMAGRAGRRG+D G V++V +
Sbjct: 717 TETFAMGLNLPTRTVVFSGYRKHDGRGFRDLLAGEYTQMAGRAGRRGLDTVGSVIIVTSG 776
Query: 592 YEGAEECC---KLLFAGVEPLVSQFTASYGMVLNLL 624
+ A K++ L SQF +Y M+LNLL
Sbjct: 777 RDEAPPITTLRKMILGDPTKLRSQFRLTYNMMLNLL 812
>gi|348669763|gb|EGZ09585.1| hypothetical protein PHYSODRAFT_318253 [Phytophthora sojae]
Length = 1421
Score = 298 bits (763), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 182/489 (37%), Positives = 265/489 (54%), Gaps = 39/489 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V E+A YDF +D FQ+ + R V V+A TS+GKT+IAE A + + R YT
Sbjct: 397 VPEMAMKYDFELDVFQKECVIHLERHECVFVAAHTSAGKTVIAEYAIAMSQKHMTRTIYT 456
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQK+R+FR FG +NVGL+TGD +IN EA L+MTTEILR+MLY+ ++
Sbjct: 457 SPIKALSNQKYRDFRTKFGPDNVGLITGDVSINPEASCLVMTTEILRSMLYRGADIIR-- 514
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DE+HY++D RG VWEE+II P+ + ++ LSAT N E + WIG+
Sbjct: 515 ----DIEWVIFDEIHYINDSERGVVWEEVIIMLPEHIGMVFLSATTPNHLEFSDWIGRTK 570
Query: 329 G-KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
K +I++ +RPVPL + L L D ++ N + +++ P D
Sbjct: 571 KQKIHVISTYKRPVPLQHFLYAGKELFKLYDATTGYLP-----NAHGAAKAKIFPASDKS 625
Query: 388 S------RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
R + N+ + TS G + + ++I+T L+ + +
Sbjct: 626 KAGGRGGRAVARGGGSSANARTLRTSGGD------------QGEWTKLINT---LKDKSL 670
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KG 497
LP + F F++R C+ + L +L E SE+ L L+ + RE P + K
Sbjct: 671 LPVVVFAFSKRLCEESANKLAKLDLSTPSERSEIHLFLETSVQRLQGSDRELPQVLMMKE 730
Query: 498 LLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
+LK G+ HH G LPI K +E LF RGLVKV+F+TET A G+NMPART V + + K
Sbjct: 731 MLKRGIGVHHGGLLPIIKEMVEILFGRGLVKVLFSTETFAMGVNMPARTVVFNGIRKHDG 790
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG-VEPLVSQFTA 615
L E QMAGRAGRRG+D+ G V++ + + AG L SQF
Sbjct: 791 KNFRDLLPGEYTQMAGRAGRRGLDSVGTVIIACWNDVPEPTSLRTMLAGKATSLSSQFRL 850
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 851 TYNMILNLL 859
>gi|413935661|gb|AFW70212.1| hypothetical protein ZEAMMB73_307219 [Zea mays]
Length = 1373
Score = 298 bits (762), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 215/625 (34%), Positives = 319/625 (51%), Gaps = 63/625 (10%)
Query: 71 DEAADEYDDDIDDDDDEEAAD-------EYDDVSGEVSDEIQQSDDEFEVSSDSSPAPSW 123
D DE++ DD+++ D D+ +S E+Q + E S D P
Sbjct: 296 DALQDEFESITTLDDEKQEVDVIRNVPETQTDLDQMLSSEVQDTGREPGASGDKKPT--- 352
Query: 124 REEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPT 183
++ W V + V F + D +A + F +DKFQ+ +I +G SV V+A T
Sbjct: 353 QDGMVWALVGGDEDIVTNFSKLVPD---MAIEFPFELDKFQKEAIYYLEKGESVFVAAHT 409
Query: 184 SSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINRE 243
S+GKT++AE A + R YT P+K +SNQK+R+F F +VGLLTGD +I E
Sbjct: 410 SAGKTVVAEYAFALATKHCTRSVYTAPIKTISNQKYRDFSGKF---DVGLLTGDVSIRPE 466
Query: 244 AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK 303
A LIMTTEILR+MLY+ ++ D++ ++ DEVHY++D RG VWEE+II PK
Sbjct: 467 ATCLIMTTEILRSMLYRGADIIR------DIEWVIFDEVHYVNDAERGVVWEEVIIMLPK 520
Query: 304 EVQIICLSATVANADELAGWIGQIHGKTELITSS-RRPVPL---------TWYFSTKTAL 353
+ I+ LSATV N E A WIG+ K +TS+ +RPVPL + +
Sbjct: 521 HINIVLLSATVPNTVEFADWIGRTKQKKIRVTSTNKRPVPLEHCLFYSGEVYKICERDMF 580
Query: 354 LPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS---RRRNSRKHADMNSNNIVTSFGQ 410
L ++ K +K +LN VKP G+ R K+ D ++ + +
Sbjct: 581 LAQGFKEAKDAFKKKNLNKFG-----VKPGSKSGTPAVRAGTQGKNPDTSNKGRDQKYPK 635
Query: 411 HQLSKNSINAIRRSQV-PQVIDTLW------HLRSRDMLPAIWFIFNRRGCDAAVQYLED 463
H+ S + + +++S P+ ++L+ +L + ++P + F F++ CD + +
Sbjct: 636 HRNSNSGVATVQQSSSGPKRFESLFWMPLVNNLLKKSLVPVVIFCFSKNRCDKSADSMFG 695
Query: 464 CNLLDECEMSEVELAL-KRFRILYPDAVREPAIKG----LLKGVAAHHAGCLPIWKSFIE 518
+L E SE+ + K F L P + G L +G+ HHAG LPI K +E
Sbjct: 696 TDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVVGIQSLLRRGIGVHHAGLLPIVKEVVE 755
Query: 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578
LF RG++KV+F+TET A G+N PART V SL K +L E QMAGRAGRRG
Sbjct: 756 MLFCRGVIKVLFSTETFAMGVNAPARTVVFDSLRKFDGKEHRKLLPGEYIQMAGRAGRRG 815
Query: 579 IDNRGHVVLVQTPYEGAEECCKLLFAGVEP--LVSQFTASYGMVLNLLAGAKVMHLSNES 636
+DN G V+++ E K L G +P L SQF +Y M+L+LL +V L E
Sbjct: 816 LDNIGTVIIMCRDEIPEESDLKNLIVG-KPTRLESQFRLTYTMILHLL---RVEELKVE- 870
Query: 637 DDMK----ALQAGRSLEEARKLVEQ 657
D +K A ++L E KL+ Q
Sbjct: 871 DMLKRSFAEFHAQKNLPEKEKLLLQ 895
>gi|302509728|ref|XP_003016824.1| hypothetical protein ARB_05117 [Arthroderma benhamiae CBS 112371]
gi|291180394|gb|EFE36179.1| hypothetical protein ARB_05117 [Arthroderma benhamiae CBS 112371]
Length = 1292
Score = 298 bits (762), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 193/520 (37%), Positives = 271/520 (52%), Gaps = 43/520 (8%)
Query: 140 KEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATV 199
KE N V ++A Y F +D FQ+ ++ G SV V+A TS+GKT++AE A
Sbjct: 305 KEITNFYELVPDMAREYPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALAN 364
Query: 200 ANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLY 259
+ + YT+P+KALSNQKFR+FR TF D VG+LTGD IN EA LIMTTEILR+MLY
Sbjct: 365 KHMTKAIYTSPIKALSNQKFRDFRGTFDD--VGILTGDIQINPEASCLIMTTEILRSMLY 422
Query: 260 QSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADE 319
+ ++ DV+ ++ DEVHY++D+ RG VWEE+II P+ V +I LSATV N E
Sbjct: 423 RGADLIR------DVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVSLILLSATVPNTYE 476
Query: 320 LAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR--KLSLNYLQLS 376
A W+G+ K +I++ +RPVPL Y + ++D + + + + K + + L
Sbjct: 477 FASWVGRTKKKDIYVISTPKRPVPLEHYLWAGKEIYKIVDSEKRFIEKGWKDADDILSGR 536
Query: 377 TSEVKPYKDGGSRRRNSRKHADMNSNNIVTSF-------------GQHQLSKNSINAIR- 422
R+ + S G+ Q S I I
Sbjct: 537 DKVKAQKAAEAQAARSGHQSERGRGQGQRGSGQRGTGQRGGPQQRGRGQPSARGIGNIAR 596
Query: 423 ------RSQVPQVIDTLWHL----RSRDMLPAIWFIFNRRGCDAAVQYLED---CNLLDE 469
R+ Q + HL R R+MLPA F+F+++ C L + C D+
Sbjct: 597 TGRGGGRTSAAQDRNVWVHLVQYLRKREMLPACIFVFSKKRCGENADSLSNQDFCTAADK 656
Query: 470 CEMSE-VELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVK 527
+ VE +L R RI D + ++ LL +GV HH G LPI K +E LF +GLVK
Sbjct: 657 SAIHMVVEKSLTRLRIEDRDLPQIRKVRELLSRGVGVHHGGLLPIVKEIVEILFAKGLVK 716
Query: 528 VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL 587
++FATET A G+N+P RT V S K G L + E QMAGRAGRRG+D G V++
Sbjct: 717 ILFATETFAMGLNLPTRTVVFSGYRKHDGRGFRDLLAGEYTQMAGRAGRRGLDTVGSVII 776
Query: 588 VQTPYEGAEECC---KLLFAGVEPLVSQFTASYGMVLNLL 624
V + + A K++ L SQF +Y M+LNLL
Sbjct: 777 VTSGRDEAPPITTLRKMILGDPTKLRSQFRLTYNMMLNLL 816
>gi|268536308|ref|XP_002633289.1| Hypothetical protein CBG06018 [Caenorhabditis briggsae]
Length = 1266
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 193/522 (36%), Positives = 288/522 (55%), Gaps = 48/522 (9%)
Query: 125 EEFKWQR-VEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPT 183
E+F++ R +EK E +E+ M +A Y F +D FQ+SS+ RG S+ V+A T
Sbjct: 257 EKFEYARKLEKSPGEEEEYQRLM---PTMARKYPFTLDYFQQSSVLCMERGESLFVAAHT 313
Query: 184 SSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINRE 243
S+GKT++AE A A++ R YT+P+KALSNQKFR+F++ FGD VGL+TGD ++ E
Sbjct: 314 SAGKTVVAEYAIALCQAHKTRAVYTSPIKALSNQKFRDFKQIFGD--VGLVTGDIQLHPE 371
Query: 244 AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK 303
A LIMTTEILR+MLY ++ D++ +V DEVHY+++ RG VWEE++I P
Sbjct: 372 AACLIMTTEILRSMLYNGSEVIR------DLEWVVFDEVHYINNEERGHVWEEVLIMLPA 425
Query: 304 EVQIICLSATVANADELAGWIGQIHG-KTELITSSRRPVPLTWYF------STKTALLPL 356
V+I+ LSATV N E A W+G+I K +I++ +RPVPL + T+ L +
Sbjct: 426 HVKIVMLSATVPNCVEFADWVGRIKNRKINVISTDKRPVPLEHFLYTGQDGKTQRDLFKI 485
Query: 357 LDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG-SRRRNSRKHADMNSNNIVTSFGQHQLSK 415
+D G+ + +K Y D S+ +++ K S S G + +
Sbjct: 486 IDRDGQFI---------------LKGYNDAKDSKTKSNEKEKAGGSGGRGGSRGGGGMKR 530
Query: 416 NSINAIRRSQVPQ------VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDE 469
N+ P ++ + ++ D LP + F+F+R+ CD Q L NL E
Sbjct: 531 GGGNSGGGKNWPGKNDKNIYLNLINFMKCADQLPMVIFVFSRKRCDDNAQMLSSMNLTTE 590
Query: 470 CEMSEVEL----ALKRFRILYPDAVREPAIKGL-LKGVAAHHAGCLPIWKSFIEELFQRG 524
E V ++R + + + ++ L L+G A HH+G LPI K +E LFQ+G
Sbjct: 591 VEKQHVRTFFSQCIQRLKGSDKELPQVLTMRELCLRGFAVHHSGILPILKEVVELLFQKG 650
Query: 525 LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 584
VK++FATET A G+NMPAR V S++K + R L E QMAGRAGRRG+D+ G
Sbjct: 651 YVKILFATETFAMGVNMPARCVVFDSITKHDGTERRLLNPGEYTQMAGRAGRRGLDSTGT 710
Query: 585 VVLV-QTPYEGAEECCKLLFAG-VEPLVSQFTASYGMVLNLL 624
VV++ + + K + +G L S+F +Y M+LNLL
Sbjct: 711 VVIICKDSSIPLPDVLKNVISGQALRLESKFRVTYSMILNLL 752
>gi|405122095|gb|AFR96862.1| translation repressor [Cryptococcus neoformans var. grubii H99]
Length = 1255
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 193/531 (36%), Positives = 274/531 (51%), Gaps = 64/531 (12%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
NE+ V E+A Y F +D FQ+ ++ G SV V+A TS+GKT++AE A +
Sbjct: 267 NEL--VSEMAKDYPFELDNFQKEAVYRLEMGDSVFVAAHTSAGKTVVAEYAIALAAKHMT 324
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ YT+P+KALSNQKFR+F+ TF + VG+LTGD IN E LIMTTEILR+MLY+
Sbjct: 325 KAIYTSPIKALSNQKFRDFKTTFEPSTVGILTGDVQINAEGSCLIMTTEILRSMLYKGAD 384
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
++ DV+ ++ DEVHY++D RG VWEE+II P+ V II LSATV N E A W
Sbjct: 385 LIR------DVEFVIFDEVHYVNDAERGVVWEEVIIMLPEHVNIILLSATVPNTKEFADW 438
Query: 324 IGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 382
+G+ K +I++ RPVPL + ++ + K + S L + K
Sbjct: 439 VGRTKKKDIYVISTPMRPVPLEHFLWAGRETHRIVSSQSKFLMEGYSSASDALRRKQDKE 498
Query: 383 YKDGGS---RRRNSRKHADMNSNNIVTS----FGQHQLSKNSINAIRRSQVPQ------- 428
+ G +R R A M + ++ T F + +N N + PQ
Sbjct: 499 REANGLPPLQRTGGRGGASMRAKDLPTGKSAPFTRIGAGRNHTNRGGGNGPPQAAFGGGR 558
Query: 429 ------------------VID-TLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDC 464
V+D +W +L+ +LP + F+F+++ C+ Q L
Sbjct: 559 GGRGGGRGGFGGSSRPSHVLDQNIWTHLISYLKKNTLLPVVNFVFSKKRCEEYAQTLS-- 616
Query: 465 NLLDEC---EMSEV----ELALKRFR---ILYPDAVREPAIKGLLKGVAAHHAGCLPIWK 514
LD C E SEV E AL R + P +R + G +G+ HH G LP+ K
Sbjct: 617 --LDLCTAKEKSEVHITWERALTRLKGEDKTLPQILRMRELLG--RGIGVHHGGLLPLVK 672
Query: 515 SFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRA 574
+E LF RGLVKV+FATET A G+NMPA++ V S + K + L E QMAGRA
Sbjct: 673 EVVEILFARGLVKVLFATETFAMGVNMPAKSVVFSGIRKHDGTSFRNLLPGEYTQMAGRA 732
Query: 575 GRRGIDNRGHVVLVQT-PYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
GRRG+D G V+++ EE +++ L SQF +Y M+LNLL
Sbjct: 733 GRRGLDTTGTVIILSGDELPSVEELNEMMLGVPNRLSSQFRLTYNMILNLL 783
>gi|84996619|ref|XP_953031.1| DEAD-family helicase [Theileria annulata strain Ankara]
gi|65304027|emb|CAI76406.1| DEAD-family helicase, putative [Theileria annulata]
Length = 1069
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 174/489 (35%), Positives = 270/489 (55%), Gaps = 54/489 (11%)
Query: 145 EMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRR 204
E ++ +L Y F +D FQ+ SI + G V VSA TS+GKT++AE + ++ ++
Sbjct: 168 EAPELSDLIVKYPFELDDFQKKSIYHLINGKHVFVSAHTSAGKTVVAEYSIALAISRGQK 227
Query: 205 IFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGM 264
YT+P+KALSNQK+REF+ FG+ NVG++TGD N A LI+TTEILRN+LY+ +
Sbjct: 228 AIYTSPIKALSNQKYREFKVKFGNENVGIITGDVLCNPGASCLIVTTEILRNLLYRGDAV 287
Query: 265 VSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
+ + V++ DE+HY++D+SRG VWEE+II P+ +Q++ LSATV N E A WI
Sbjct: 288 IGQ------ISVVIFDEIHYINDLSRGVVWEEVIILLPRNIQLVMLSATVPNYLEFAEWI 341
Query: 325 GQIHGKTELIT-SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 383
G + K LI ++ RPVPL Y + KG N++ + Y
Sbjct: 342 GNVMQKEVLIIMTNHRPVPLKHYLYIYDRFFLIHGAKG--FNKE----------AYHIMY 389
Query: 384 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 443
K + + N +K ++F + QV ++ L L S D +P
Sbjct: 390 KYTSTLKINDKK----------STF--------------KGQVQKLQRLLKQLESEDKMP 425
Query: 444 AIWFIFNRRGCDAAVQYLEDCNLL-DECEMSEVELALKRFRILYPDAVRE-PAIKGLL-- 499
+ F F+R+ C+ + + + NL+ ++ + S++ L LK ++ R P ++ ++
Sbjct: 426 VVLFCFSRQKCEQYAKDMPNLNLVYNKVQASKIHLFLKESLDGLSESDRNLPQLRKMVNL 485
Query: 500 --KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
+G+ HH+G LPI K +E LF RGL+KV+FATET A G+NMPAR+ V +S+ K
Sbjct: 486 LTRGIGVHHSGLLPIIKEMVEILFSRGLIKVLFATETFAMGVNMPARSVVFTSIYKHDGI 545
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFT 614
LTS+E QMAGRAGRRG+D G+V + + P ++ ++ L S+F
Sbjct: 546 NYRYLTSSEYTQMAGRAGRRGLDTFGNVYIFCCDEPP--DVQDLTNMMIERSTRLESRFR 603
Query: 615 ASYGMVLNL 623
+Y M+L +
Sbjct: 604 ITYNMLLQI 612
>gi|156084552|ref|XP_001609759.1| helicase with zinc finger motif protein [Babesia bovis T2Bo]
gi|154797011|gb|EDO06191.1| helicase with zinc finger motif protein, putative [Babesia bovis]
Length = 1113
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 172/484 (35%), Positives = 264/484 (54%), Gaps = 48/484 (9%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
++++L Y F +D FQ+ +I + V V+A TSSGKT++AE A ++ ++ Y
Sbjct: 197 ELEDLVIEYPFELDDFQKRAIYHLHKMKHVFVAAHTSSGKTVVAEYAIALALSRGKKAVY 256
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
T+P+KALSNQKFREF + +G+ VG++TGD + N A LI+TTEILRN+LY+ ++
Sbjct: 257 TSPIKALSNQKFREFTKRYGNETVGIITGDVSCNPNAPCLIVTTEILRNLLYRGDPIIGQ 316
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
+ V++ DEVHY++D RG VWEE+ I PK +Q++ LSATV N E A WIG I
Sbjct: 317 ------LGVVIFDEVHYINDFQRGVVWEEVFIMLPKSIQLVMLSATVPNYAEFADWIGAI 370
Query: 328 HGKTEL-ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
+ + I ++RRPVPL + + LLD KG N+ N ++S+ G
Sbjct: 371 MEREVITIVTTRRPVPLVHFMYIYNRIFLLLDNKGV-FNKDAYHNMYKISSQ-----NKG 424
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
S +R T+F + QV ++ + HL LP +
Sbjct: 425 SSIKR--------------TTF--------------KGQVQKLQRLIRHLEMTQKLPVVL 456
Query: 447 FIFNRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVRE-----PAIKGLLK 500
F F+R C++ + + + NL + + S++ + LK + R+ IK L +
Sbjct: 457 FCFSRAKCESYAREMPNLNLNSNHVQRSKIHIFLKESLSSISEDDRDLMQVKSIIKLLYR 516
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+ HH+G LP+ K +E LF RGL+KV+FATET A G+NMPAR+ + +S+ K
Sbjct: 517 GIGVHHSGLLPLMKEIVEILFSRGLIKVLFATETFAMGVNMPARSVIFTSIHKHDGQKTR 576
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
LT++E QMAGRAGRRG+D+ G V + ++ ++F L S+F +Y M
Sbjct: 577 HLTASEYTQMAGRAGRRGLDSFGSVYIFCPDDPPDLQDLTTMMFEKSTKLESKFRITYNM 636
Query: 620 VLNL 623
+L +
Sbjct: 637 LLQV 640
Score = 43.5 bits (101), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 94/225 (41%), Gaps = 27/225 (12%)
Query: 956 EEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIR 1015
+E+++ + +R+T +++ S + E + V+ + LD N + G A +
Sbjct: 891 QERVESCRNELERITSLLKEESLSSYDEMVAKVEVLKQLDFLDENGKPTVK-GRIATYLT 949
Query: 1016 GENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV 1075
+E+ L + +L DL+P + AA+ ++ V N+ S P V +
Sbjct: 950 TGDEITLTETITQNVLNDLEPEECAAILSAFV---------HNDRS---PEKEVPSPTAA 997
Query: 1076 LDEHRSSFLELQEKHGV------------EIPCCLDSQFSGMVEAWASGLTWREMMMDCA 1123
+ + R L+L K V + + S ++ WA G + E+M
Sbjct: 998 IQKARDMVLDLHSKVDVVQRALNVVVSREDHSALCNFSLSYVIYQWAIGTPFSEIMQYTD 1057
Query: 1124 LDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDASNVMDR 1166
L +G + R + R +L +I ++ ++ DQ LQ SN + R
Sbjct: 1058 LQEGHIVRAITRLDELCRKIGQVANINGDQALQSKIEKVSNSIKR 1102
>gi|426201331|gb|EKV51254.1| hypothetical protein AGABI2DRAFT_182217 [Agaricus bisporus var.
bisporus H97]
Length = 1231
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 182/490 (37%), Positives = 261/490 (53%), Gaps = 20/490 (4%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V +A Y F +D FQ+ ++ G SV V+A TS+GKT++AE A + R YT
Sbjct: 266 VPAMAREYPFELDTFQKQAVYHLELGDSVFVAAHTSAGKTVVAEYAIGLAEKHMTRAIYT 325
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+F+++F ++VG+LTGD IN EA L+MTTEILR+MLY+ ++
Sbjct: 326 SPIKALSNQKFRDFKQSFSSSSVGILTGDVQINPEATCLVMTTEILRSMLYKGADLIR-- 383
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D RG VWEE+II P V II LSATV N E A W+G+
Sbjct: 384 ----DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTK 439
Query: 329 GK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
K +I++ +RPVPL Y ++D K ++ S L + K + G
Sbjct: 440 KKDIYVISTLQRPVPLEHYLYAGRDKFKIVDAKRTFLSNGYSDARDALRRKQDKEREAAG 499
Query: 388 -----SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ--VIDTLWHLRSRD 440
+ R +N+ ++ R + + L HL+ +
Sbjct: 500 LAPVQATRGRGASARGGGANSRGSTLATRGRGGRGGGPARTIHADKNVYVHLLGHLKKEN 559
Query: 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAI---K 496
+LP + F F+++ C+ + L + +L E SEV +A+ K L + P I +
Sbjct: 560 LLPVVIFTFSKKRCEENARTLMNADLCTSVEKSEVHVAIEKALSRLKGSDKKLPQIARMR 619
Query: 497 GLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
LL +G+ HH G LPI K +E LF RGLVKV+FATET A G+NMPA+ V S++ K
Sbjct: 620 DLLSRGIGIHHGGLLPIMKEVVEILFARGLVKVLFATETFAMGVNMPAKCVVFSNIRKHD 679
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFT 614
+ E QMAGRAGRRG+D G V +LV +L L+SQF
Sbjct: 680 GRNFRDILPGEYTQMAGRAGRRGLDTTGTVIILVGDSLPEQNTLHTMLLGTPGKLMSQFR 739
Query: 615 ASYGMVLNLL 624
+Y M+LNLL
Sbjct: 740 LTYNMILNLL 749
>gi|432881494|ref|XP_004073810.1| PREDICTED: helicase SKI2W-like isoform 2 [Oryzias latipes]
Length = 1227
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 200/523 (38%), Positives = 274/523 (52%), Gaps = 67/523 (12%)
Query: 117 SSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSS 176
S P S E+ KW + + +F + A + F +D FQ+ +I S
Sbjct: 279 SKPTESPEEKKKWAIPVDITSPCDDFYKR---IPNPAFKWPFELDVFQKQAILRLEAHDS 335
Query: 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236
V V+A TS+GKT++AE A + + R YT+P+KALSNQKFR+F+ TF D VGLLTG
Sbjct: 336 VFVAAHTSAGKTVVAEYAIALSQKHMTRTIYTSPIKALSNQKFRDFKTTFKD--VGLLTG 393
Query: 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEE 296
D ++ E+ LIMTTEILR+MLY ++ D++ ++ DEVHY++D RG VWEE
Sbjct: 394 DVQLSPESACLIMTTEILRSMLYNGSEVIR------DLEWVIFDEVHYINDAERGVVWEE 447
Query: 297 IIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF----STKT 351
++I P V II LSATV NA E + WIG+I K +I++ +RPVPL + STKT
Sbjct: 448 VLIMLPDHVSIILLSATVPNALEFSEWIGRIKKKHIYVISTMKRPVPLEHHLYTGNSTKT 507
Query: 352 A--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFG 409
+ L+D G + + Y +++ S KHA +FG
Sbjct: 508 QKEMFLLVDAAGNFLTKGY--------------YAAVDAKKERSSKHAQ--------TFG 545
Query: 410 QHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDE 469
S+N+ A +R Q P + F F+R CD + LE +L
Sbjct: 546 AKNTSQNT-TASQRQQTP----------------VVAFTFSRARCDDNARSLESMDLTTS 588
Query: 470 CEMSEV----ELALKRFRILYPDAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRG 524
E +E+ + +L R R + ++ LLK GVA HH+G LPI K IE LF RG
Sbjct: 589 VEKAEIHSFFQKSLSRLRGGDRQLPQILLMRDLLKRGVAVHHSGILPILKEVIEMLFSRG 648
Query: 525 LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 584
LVKV+FATET A G+NMPART V S+ K +G L E QMAGRAGRRG+D G
Sbjct: 649 LVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGT 708
Query: 585 VVLVQTPYEGAEECCKL---LFAGVEPLVSQFTASYGMVLNLL 624
V+++ G E L + L SQF +Y M+LNLL
Sbjct: 709 VIILCK--AGVHEMADLHAMMMGKPTILQSQFRLTYTMILNLL 749
>gi|402084399|gb|EJT79417.1| FRQ-interacting RNA helicase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1113
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 184/483 (38%), Positives = 269/483 (55%), Gaps = 36/483 (7%)
Query: 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209
DE A +Y F++D FQ S+ + RG SV+VSA TS+GKT++AE A + +R+ YT+
Sbjct: 175 DEPARVYRFKLDPFQSISVASIERGESVLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTS 234
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSES 269
P+KALSNQK+REF+ FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 235 PIKALSNQKYREFQAEFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR--- 289
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
+V ++ DE+HY+ D RG VWEE II P +V+ + LSAT+ NA + A WI +IH
Sbjct: 290 ---EVAWVIFDEIHYMRDAIRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHR 346
Query: 330 KT-ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
+ ++ + RP PL YF + + ++DE G + R+ + N S + +D
Sbjct: 347 QACHVVYTDFRPTPLQNYFFPAGGEGIYLVVDENG--VFREKNFN------SAIAAIEDN 398
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
S+ N + N T G+++ + +S + +++ + + P I
Sbjct: 399 KSKDAN-------DPNARQTGKGKNKKPRKDTGPDAKSDITKIVKMIM---KKAFHPVIV 448
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAIKGLL----KG 501
F F++R C+ + N E E V+ + L + P I+ L+ KG
Sbjct: 449 FNFSKRECENLALKVSSMNFNHETEQQLVDDIFHNAIMSLSEEDQNLPQIQHLIPLLKKG 508
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+ HH G LPI K IE LFQ GL+KV+FATET + G+NMPART V S ++K
Sbjct: 509 IGVHHGGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFSQVTKFDGVKERP 568
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMV 620
LTS+E QMAGRAGRRG+D+RG +V++ + E K + AG + L S F Y M+
Sbjct: 569 LTSSEYIQMAGRAGRRGLDDRG-IVIMMIGEQLEPEVAKGIVAGQQDRLNSAFHLGYNMI 627
Query: 621 LNL 623
LNL
Sbjct: 628 LNL 630
>gi|229820554|ref|YP_002882080.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
gi|229566467|gb|ACQ80318.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
12333]
Length = 933
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 192/532 (36%), Positives = 271/532 (50%), Gaps = 78/532 (14%)
Query: 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216
DF +D FQ + EA G V+V+APT +GKT++ E A + R+ FYTTP+KALSN
Sbjct: 30 DFDLDAFQVEACEALEAGRGVLVAAPTGAGKTVVGEFAVRLGLDEGRKSFYTTPIKALSN 89
Query: 217 QKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276
QK+ + G NVGLLTGD IN EA +++MTTE+LRNM+Y + L +
Sbjct: 90 QKYLDLVRVHGAENVGLLTGDVTINGEAPVVVMTTEVLRNMIY------AGSPTLDGLRY 143
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
+V+DEVHYL+D RG+VWEE+II +V+++ LSATV+NA+E W+ + G T ++ S
Sbjct: 144 VVMDEVHYLADRFRGSVWEEVIILLAADVRLVSLSATVSNAEEFGQWLETVRGDTAVVVS 203
Query: 337 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG--------- 387
RPVPL W +HM + + L L +S+V P G
Sbjct: 204 EHRPVPL-W----------------QHM--MVRNDVLDLYSSKVDPTDPGAHPPINPDIL 244
Query: 388 -----SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
+ R S A + + +R ++ P V+D L +L
Sbjct: 245 EAVRRAERTGSGSGAPHRARRGRGGRSTRDARRTGHQQVRPARRPVVVD---RLDREGLL 301
Query: 443 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFR-ILYPDAVREPA------- 494
PAI F+F+R GC+ AV + + E + +R R I+ PA
Sbjct: 302 PAIVFVFSRAGCEDAVAAVVGSGITLTTEEEQ-----RRIREIVEVRCAALPAEDLDVLG 356
Query: 495 ----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
+ L +GVAAHHAG LP++K +E LF GLVKVVFATETLA GINMPAR+ VL
Sbjct: 357 FWQFARALERGVAAHHAGLLPVFKETVEALFSAGLVKVVFATETLALGINMPARSVVLER 416
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 610
L K + +++ E Q+ GRAGRRGID GH V++ L PL
Sbjct: 417 LVKWDGREHVAVSAGEYTQLTGRAGRRGIDVEGHAVVLYASGTDPVAVAGLASRRTYPLR 476
Query: 611 SQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
S F +Y M +NL+ L++GR++ AR+++E SF +
Sbjct: 477 SSFRPTYNMAVNLV-----------------LRSGRAM--AREVLETSFAQF 509
>gi|344239160|gb|EGV95263.1| Helicase SKI2W [Cricetulus griseus]
Length = 1316
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 208/551 (37%), Positives = 285/551 (51%), Gaps = 63/551 (11%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS P P+ +E+ W + + V +F + + A + F D FQ+ +I
Sbjct: 195 VSLLEPPKPAAQEQ--WAVPVDVTSPVGDFYRL---IPQPAFQWSFEPDVFQKQAILHLE 249
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
+ SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 250 QHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 307
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY S + D++ ++ DEVHY++D RG
Sbjct: 308 LLTGDVQLHPEASCLIMTTEILRSMLY------SGSDVIRDLEWVIFDEVHYINDAERGV 361
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 362 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGN 421
Query: 348 --STKTALLPLLDEKGKH---------------------MNRKLSL---NYLQLST--SE 379
T+ L LLD +G +R L+L L L+ S
Sbjct: 422 SPKTQGELFLLLDSRGAFHTKGYCAGPHAPSLCAQVLCWASRPLTLCSGTVLGLTPPHSV 481
Query: 380 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 439
++ Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 482 LRYYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRG---VYLSLLASLRAR 530
Query: 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI--- 495
LP + F F+R CD L +L E SEV L L+R + R+ P +
Sbjct: 531 AQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEVHLFLQRCLARLRGSDRQLPQVLHM 590
Query: 496 -KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554
+ L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 591 SELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH 650
Query: 555 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQF 613
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 651 DGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQF 710
Query: 614 TASYGMVLNLL 624
+Y M+LNLL
Sbjct: 711 RLTYTMILNLL 721
>gi|402866529|ref|XP_003897432.1| PREDICTED: helicase SKI2W isoform 1 [Papio anubis]
Length = 1246
Score = 297 bits (760), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 258/489 (52%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I R SV V+A TS+GKT++AE A + R YT
Sbjct: 300 IPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 359
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 360 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 415
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 416 ----DLEWVIFDEVHYTWSAQRGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 471
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 472 RRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY------------- 518
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 519 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 566
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 687 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 746
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 747 TYTMILNLL 755
>gi|402866531|ref|XP_003897433.1| PREDICTED: helicase SKI2W isoform 2 [Papio anubis]
Length = 1146
Score = 296 bits (759), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 258/489 (52%), Gaps = 46/489 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ + A + F D FQ+ +I R SV V+A TS+GKT++AE A + R YT
Sbjct: 200 IPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 259
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++
Sbjct: 260 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR-- 315
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY RG VWEE++I P V II LSATV NA E A WIG++
Sbjct: 316 ----DLEWVIFDEVHYTWSAQRGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 371
Query: 329 GK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
+ +I++ RPVPL Y T+ L LLD +G +
Sbjct: 372 RRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGY------------- 418
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 419 -YAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 466
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----K 496
LP + F F+R CD L +L E SE+ L L+R + R+ P + +
Sbjct: 467 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 526
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 527 LLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 586
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTA 615
S L E QMAGRAGRRG+D G V+L+ + + +++ L SQF
Sbjct: 587 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRL 646
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 647 TYTMILNLL 655
>gi|255950278|ref|XP_002565906.1| Pc22g20040 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592923|emb|CAP99292.1| Pc22g20040 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1265
Score = 296 bits (759), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 193/518 (37%), Positives = 272/518 (52%), Gaps = 46/518 (8%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V + ++ F NE+ V E+A Y F +D FQ+ ++ G SV V+A TS+GK
Sbjct: 294 EWAHVVDVNKDIPNF-NEL--VPEMAREYPFELDTFQKEAVYHLENGDSVFVAAHTSAGK 350
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A + + YT+P+KALSNQK+R+FR F D VG+LTGD IN EA L
Sbjct: 351 TVVAEYAIALAAKHMTKAIYTSPIKALSNQKYRDFRAEFDD--VGILTGDVQINPEASCL 408
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V +
Sbjct: 409 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQERGVVWEEVIIMLPEHVTL 462
Query: 308 ICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366
I LSATV N E A W+G+ K +I++ +RPVPL Y L K KH
Sbjct: 463 ILLSATVPNTREFASWVGRTKKKDIYVISTHKRPVPLEHY---------LWAGKSKHKIV 513
Query: 367 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR---R 423
+ +L+ G + + ++ + + +N R R
Sbjct: 514 DSNKRFLETGWKAADDILSGRDKLKAMKEAEAQAQSAQARAPAPQGRGRNIARTGRGGGR 573
Query: 424 SQVPQVIDTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE---- 474
+ Q +T W HLR D+LP F+F+++ C+ L + + E S
Sbjct: 574 TSAAQDKNT-WVHLVSHLRKEDLLPGCVFVFSKKRCEENADSLSSQDFSNSTEKSLTHMF 632
Query: 475 VELALKRFRILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVF 530
+E AL R + P+ P I + L +G+A HH G LPI K +E LF + LVKV+F
Sbjct: 633 IEKALTRLK---PEDRTLPQILRLRELLSRGIAVHHGGLLPIVKEVVEILFAKSLVKVLF 689
Query: 531 ATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 590
ATET A G+N+P RT V S K L E QMAGRAGRRG+DN G+V++ +
Sbjct: 690 ATETFAMGLNLPTRTVVFSGFRKHDGKAFRDLLPGEYTQMAGRAGRRGLDNVGYVIVTSS 749
Query: 591 PYEGAEECCKL--LFAGVEP--LVSQFTASYGMVLNLL 624
+ A L + G EP L SQF +Y M+LNLL
Sbjct: 750 GRDEAPSAASLKQMILG-EPTKLRSQFRLTYHMILNLL 786
>gi|156375784|ref|XP_001630259.1| predicted protein [Nematostella vectensis]
gi|156217276|gb|EDO38196.1| predicted protein [Nematostella vectensis]
Length = 950
Score = 296 bits (758), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 189/502 (37%), Positives = 265/502 (52%), Gaps = 66/502 (13%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V ++A +DF D FQ+ +I SV V+A TS+GKT +AE A ++ R YT
Sbjct: 15 VPDMAHKWDFEPDTFQKQAILRLEAHDSVFVAAHTSAGKTAVAEYAIALAHQHRTRTIYT 74
Query: 209 TPLKALSNQKFREFRETFGDN----NVGLLTGDSAINREAQILIMTTEILRNMLYQSVGM 264
+P+KALSNQKFR+F++T + ++GLLTGD I EA LIMTTEILR+MLY +
Sbjct: 75 SPIKALSNQKFRDFKKTLSVDHPGLDIGLLTGDVQIKPEASCLIMTTEILRSMLYNGSDV 134
Query: 265 VSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
+ DV+ ++ DEVHY++D RG VWEE++I P V II LSATV N E A WI
Sbjct: 135 IR------DVEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNTLEFADWI 188
Query: 325 GQI-HGKTELITSSRRPVPLTWYF----STKTA--LLPLLDEKGKHMNRKLSLNYLQLST 377
G+ K +I++++RPVPL + S KT+ L L+D+ K + R
Sbjct: 189 GRTKRKKIYVISTAKRPVPLEHFLYTGNSNKTSNELFLLVDQHSKFLTRGYQ-------- 240
Query: 378 SEVKPYKDGGSRRRNS--RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW- 434
+ + K+ S+ +++ K A N N P+ ++W
Sbjct: 241 AAIDAKKERASKGKDAYGAKGARTNYN------------------------PKADRSVWL 276
Query: 435 ----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF--RI---- 484
L +D LP + F F+RR C+ L + NL E S + + ++++ R+
Sbjct: 277 SLITMLEKKDKLPVVAFTFSRRKCEENADQLSNLNLTTSVERSRIHVEMQKYLARLKGSD 336
Query: 485 -LYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 543
P R + L +G+ HH+G LPI K IE LFQ GLVK+++ATET A G+NMPA
Sbjct: 337 KTLPQVTRMQEL--LQRGIGVHHSGILPILKEMIEILFQEGLVKLLYATETFAMGVNMPA 394
Query: 544 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLL 602
RT V S K S L E QMAGRAGRRG D G V +L + A + K++
Sbjct: 395 RTVVFDSTRKNDGSSFRDLLPGEYVQMAGRAGRRGKDTTGTVIILCKGDVPEASDLHKMM 454
Query: 603 FAGVEPLVSQFTASYGMVLNLL 624
LVSQF +Y M+LNLL
Sbjct: 455 LGKPTTLVSQFRLTYSMILNLL 476
>gi|301111187|ref|XP_002904673.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262095990|gb|EEY54042.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 1374
Score = 296 bits (758), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 196/567 (34%), Positives = 289/567 (50%), Gaps = 60/567 (10%)
Query: 73 AADEYDDDIDDD---DDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAPSWREEFKW 129
A+ E + DDD D E A + D + E S + +SP W
Sbjct: 293 ASGEVESSTDDDSIEDPETALETILDAASESST--------LTLQKRTSPTSEW------ 338
Query: 130 QRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTL 189
+V+ F + V E+A Y+F +D FQ+ + R V V+A TS+GKT+
Sbjct: 339 --ASMASVDVRNFHEK---VPEMAMKYEFELDVFQKECVIHLERHECVFVAAHTSAGKTV 393
Query: 190 IAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIM 249
IAE A + + R YT+P+KALSNQK+R+FR FG +NVGL+TGD +IN +A L+M
Sbjct: 394 IAEYAIAMSQRHMTRTIYTSPIKALSNQKYRDFRSKFGPDNVGLITGDVSINPDASCLVM 453
Query: 250 TTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIIC 309
TTEILR+MLY+ ++ D++ ++ DE+HY++D RG VWEE+II P+ + ++
Sbjct: 454 TTEILRSMLYRGADIIR------DIEWVIFDEIHYINDSERGVVWEEVIIMLPEHIGMVF 507
Query: 310 LSATVANADELAGWIGQIHG-KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKL 368
LSAT N E + WIG+ K +I++ +RPVPL + L + D
Sbjct: 508 LSATTPNHLEFSDWIGRTKKQKIHVISTYKRPVPLQHFLYAGKELFKIYD---------- 557
Query: 369 SLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ 428
+TS P G ++ + + + + S ++ +IR S Q
Sbjct: 558 -------ATSGYLPNAHGAAKSKLFPMSDKSKAGRGGGAVARGGGSSANVRSIRTSGGDQ 610
Query: 429 -----VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFR 483
+I+T L+ + +LP + F F++R C+ + L +L E SE+ L L+
Sbjct: 611 GEWTKLINT---LKDKALLPVVVFAFSKRLCEESASKLAKLDLSTPSERSEIHLFLETSV 667
Query: 484 ILYPDAVRE-PAI---KGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 538
+ RE P + K +LK G+ HH G LPI K +E LF RGLVKV+F+TET A G
Sbjct: 668 QRLQGSDRELPQVLTMKEMLKRGIGVHHGGLLPIIKEMVEILFGRGLVKVLFSTETFAMG 727
Query: 539 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 598
+NMPART V + + K L E QMAGRAGRRG+D+ G V++
Sbjct: 728 VNMPARTVVFNGIRKHDGKNFRDLVPGEYTQMAGRAGRRGLDSVGTVIIACWNDVPEATS 787
Query: 599 CKLLFAG-VEPLVSQFTASYGMVLNLL 624
+ + AG L SQF +Y M+LNLL
Sbjct: 788 LRTMLAGKATSLSSQFRLTYNMMLNLL 814
>gi|403224053|dbj|BAM42183.1| DEAD-box family helicase [Theileria orientalis strain Shintoku]
Length = 1071
Score = 296 bits (757), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 194/578 (33%), Positives = 289/578 (50%), Gaps = 73/578 (12%)
Query: 68 TDADEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSS--------- 118
+ D DE I +D E + G V+DE + + ++++
Sbjct: 88 VELDNIKDELYASIYYSNDTEKGEPEAYTQGPVADEADSDYSQEKTENNNTIPNNDPYQL 147
Query: 119 --PAPSWREEF---KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLR 173
P P + + KW V+ E E N +I+ Y F +D FQ+ +I +
Sbjct: 148 IIPKPGENKNYIRKKWSIVDD--KEPPELNNLIIE-------YPFVLDDFQKKAINHLIN 198
Query: 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGL 233
G V VSA TS+GKT++AE A ++ + YT+P+KALSNQK+REF++ FG NVG+
Sbjct: 199 GKHVFVSAHTSAGKTVVAEYAIAMALSRGEKAIYTSPIKALSNQKYREFKDKFGPENVGI 258
Query: 234 LTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTV 293
+TGD N A LI+TTEILRN+LY+ +S + + V++ DE+HY++D+SRG V
Sbjct: 259 VTGDVLCNPTASCLIVTTEILRNLLYR------GDSVIEQICVVIFDEIHYINDLSRGVV 312
Query: 294 WEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTA 352
WEE+II PKEVQ++ LSATV N E A WIG I K +I ++ R VPL Y
Sbjct: 313 WEEVIIMLPKEVQLVMLSATVPNYVEFAEWIGSIMQKEVVIILTNFRSVPLKHYLYAHDR 372
Query: 353 LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQ 412
LL G + + +ST +V K
Sbjct: 373 FF-LLVGSGGFNKEAYHIMHKYVSTLKVAEKK---------------------------- 403
Query: 413 LSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL-LDECE 471
A + +V ++ L L + D LP + F FNR+ C+ + + + NL + +
Sbjct: 404 -------ATFKGEVQKLQKLLKTLETEDKLPVVLFCFNRQKCEQYAKDMPNLNLAYTKTQ 456
Query: 472 MSEVELALKR-FRILYPDAVREPAIKGLLK----GVAAHHAGCLPIWKSFIEELFQRGLV 526
S++ L LK L + P ++ ++K G+ HH+G LPI K +E LF RGL+
Sbjct: 457 RSKIHLFLKESLEGLTEEDRNLPQLRKMIKLLARGIGVHHSGLLPIIKEMVEILFSRGLI 516
Query: 527 KVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV- 585
KV+FATET A G+NMPAR+ V +S+ K LTS+E QMAGRAGRRG+D G+V
Sbjct: 517 KVLFATETFAMGVNMPARSVVFTSIYKHDGIKYRYLTSSEYTQMAGRAGRRGLDTFGNVY 576
Query: 586 VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
+ ++ ++ L S+F +Y M+L +
Sbjct: 577 IFCSDEAPDVQDLTNMIIERSTRLESRFRITYNMLLQI 614
Score = 41.2 bits (95), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV--SEGIKVRLWKNNSSIYEP 1065
G A I +EL L L IL DL P + AA+ ++ + + + ++ +
Sbjct: 900 GRIATFITTSDELTLTEALAQNILADLTPPECAAILSAFIYNDKAPEKEAPSPTLALQQA 959
Query: 1066 STTVINVINVLDE-HRSSFLEL-QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA 1123
+ VIN+ +D R+ + + QE H C + S +V WASG+ + E+M
Sbjct: 960 KSQVINIHKKIDVVQRALGVRVSQEYHN---SLC-NFTLSYLVYQWASGVPFNEIMELTD 1015
Query: 1124 LDDGDLARLLRRTIDLLAQIPKLPDV 1149
L DG + R++ R +L ++ + V
Sbjct: 1016 LQDGHIVRVILRLDELCRKMAQTAGV 1041
>gi|71028712|ref|XP_763999.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350953|gb|EAN31716.1| hypothetical protein TP04_0364 [Theileria parva]
Length = 1069
Score = 296 bits (757), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 172/487 (35%), Positives = 269/487 (55%), Gaps = 50/487 (10%)
Query: 145 EMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRR 204
E ++ +L + Y F +D FQ+ SI + G V VSA TS+GKT++AE + ++ ++
Sbjct: 168 EAPELTDLIAQYPFELDDFQKKSIHHLINGKHVFVSAHTSAGKTVVAEYSIALAISRGQK 227
Query: 205 IFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGM 264
YT+P+KALSNQK+REF+ FG+ NVG++TGD N A LI+TTEILRN+LY+
Sbjct: 228 AIYTSPIKALSNQKYREFKVKFGNENVGIITGDVLCNPGASCLIVTTEILRNLLYR---- 283
Query: 265 VSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
+S + + V++ DE+HY++D++RG VWEE+II P+ +Q++ LSATV N E WI
Sbjct: 284 --GDSVIGQISVVIFDEIHYINDLTRGVVWEEVIILLPRNIQLVMLSATVPNYLEFGEWI 341
Query: 325 GQIHGKTELIT-SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 383
G + K LI ++ RPVPL Y + KG N++ + Y
Sbjct: 342 GNVMQKEVLIIMTNHRPVPLKHYLYIYDRFFLIHGAKG--FNKE----------AYHIMY 389
Query: 384 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 443
K + + N +K ++F + QV ++ L L S D +P
Sbjct: 390 KYTSTLKINDKK----------STF--------------KGQVQKLQRLLKQLESEDKMP 425
Query: 444 AIWFIFNRRGCDAAVQYLEDCNLL-DECEMSEVELALKRFRILYPDAVRE-PAIKGLL-- 499
+ F F+R+ C+ + + + NL+ ++ + S++ L LK ++ R P ++ ++
Sbjct: 426 VVLFCFSRQKCEQYAKDMPNLNLVYNKVQASKIHLFLKESLDGLSESDRNLPQLRKMVNL 485
Query: 500 --KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
+G+ HH+G LPI K +E LF RGL+KV+FATET A G+NMPAR+ V +S+ K
Sbjct: 486 LTRGIGVHHSGLLPIIKEMVEILFSRGLIKVLFATETFAMGVNMPARSVVFTSIYKHDGI 545
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
LTS+E QMAGRAGRRG+D G+V + ++ ++ L S+F +
Sbjct: 546 TYRYLTSSEYTQMAGRAGRRGLDTFGNVYIFCSDEPPDVQDLTNMMIERSTRLESRFRIT 605
Query: 617 YGMVLNL 623
Y M+L +
Sbjct: 606 YNMLLQI 612
>gi|328774102|gb|EGF84139.1| hypothetical protein BATDEDRAFT_9076, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 868
Score = 296 bits (757), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 184/488 (37%), Positives = 261/488 (53%), Gaps = 30/488 (6%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V ELA + F +D FQ+ ++ SV V+A TS+GKT++AE A R YT
Sbjct: 20 VPELAHQFPFELDIFQKRAVYHLENSESVFVAAHTSAGKTVVAEYAIALAQKRMTRAIYT 79
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FRETF D VG+LTGD I EA LIMTTEILR+MLY+ ++
Sbjct: 80 SPIKALSNQKFRDFRETFDD--VGILTGDVQIKPEASCLIMTTEILRSMLYRGADLIR-- 135
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D RG VWEE+II P V +I LSATV N E A W+G+
Sbjct: 136 ----DVEFVIFDEVHYVNDAERGVVWEEVIIMLPSHVSLILLSATVPNTKEFADWVGRTK 191
Query: 329 GK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
K +I++ +RPVPL Y + ++D + Y V P K
Sbjct: 192 QKDIYVISTLKRPVPLEHYLYFEKDCYKIVDSTKTFIPAGYKKAY-----DAVNPPK--- 243
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL----RSRDMLP 443
+ + + Q+++ S ++ + P + HL + R +LP
Sbjct: 244 --KEVVKSDSGRGRGAGRGGGQSSQVARPSQSSGKSYGGPSDKNLYTHLIGMLKKRVLLP 301
Query: 444 AIWFIFNRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVRE-PAI----KG 497
AI F F++R C+ L + +L L E SE+ + ++R + + RE P + +
Sbjct: 302 AIIFTFSKRKCEEYANTLSNTDLTLGSSEKSEIHVFIERSLVCLKGSDRELPQVMRMREL 361
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
L +G+A HH+G LPI K +E LF RGLVKV+FATET A G+N PA+ V S + K
Sbjct: 362 LGRGIAVHHSGLLPILKEMVEILFTRGLVKVLFATETFAMGVNAPAKCVVFSMIRKHDGV 421
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV-EPLVSQFTAS 616
G L E QM+GRAGRRG+D+ G V++ + + + G L SQF +
Sbjct: 422 GFRNLLPGEYTQMSGRAGRRGLDDTGMVIIANSNDIPDQTTLNQMILGTPTKLASQFRVT 481
Query: 617 YGMVLNLL 624
Y M+LNLL
Sbjct: 482 YNMILNLL 489
>gi|321468891|gb|EFX79874.1| hypothetical protein DAPPUDRAFT_304359 [Daphnia pulex]
Length = 1192
Score = 295 bits (755), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 196/539 (36%), Positives = 282/539 (52%), Gaps = 56/539 (10%)
Query: 145 EMIDVDE-LASIYD----------FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEA 193
E+IDV L + YD F +D+FQ+ +I +G V ++A TS+GKT++AE
Sbjct: 234 EIIDVSSSLENFYDLVPNPAFTWPFELDRFQKHAIIHLEKGEDVFIAAHTSAGKTVVAEY 293
Query: 194 AAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEI 253
A + + R YT+P+KALSNQKFR+F+ TF D VGLLTGD IN +A LIMTTEI
Sbjct: 294 AIALSQKHMTRAIYTSPIKALSNQKFRDFKTTFTD--VGLLTGDVQINAKATCLIMTTEI 351
Query: 254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSAT 313
LR+MLY ++ D++ ++ DEVHY++D RG VWEE++I P V I+ LSAT
Sbjct: 352 LRSMLYNGSDIIR------DLEWVIFDEVHYINDSERGVVWEEVLILLPSHVNIVMLSAT 405
Query: 314 VANADELAGWIGQIHG-KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 372
V N E A W+G+ G K +I++ +RPVPL Y T L K K R L +N
Sbjct: 406 VPNTSEFATWVGRTKGRKMYVISTLKRPVPLEHYLYTG------LTGKSKD-ERFLIVN- 457
Query: 373 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 432
+ P + K D+ + G+ + + + +I
Sbjct: 458 ---AEGAFVPKGYMAAMEAKKSKEKDVKPGGAAAAAGRGRGGQAQEKNL-------LIAL 507
Query: 433 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF--RILYPDAV 490
L HL+ ++ LP + F F+R CD L +L+ E + ++ R+ D
Sbjct: 508 LDHLKKQEQLPVVAFTFSRNRCDQNSSLLTSVDLVTAEERGRIHQFFQKCVSRLKGSDQ- 566
Query: 491 REPAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
+ P + L +G+ HH+G LPI K +E LFQ GLVK++FATET A G+NMPART
Sbjct: 567 KLPQVTNMQTLLKRGIGVHHSGILPILKEVVEMLFQEGLVKLLFATETFAMGVNMPARTV 626
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAG 605
V ++ K +G L E QMAGRAGRRG+D G V +L + + E ++
Sbjct: 627 VFDTIRKHDGTGFRNLLPAEYIQMAGRAGRRGLDTTGTVIILCKNDVPESSELHAMMLGQ 686
Query: 606 VEPLVSQFTASYGMVLNLLAGAKVMHLSNE-------SDDMKALQAGRSLEEARKLVEQ 657
L SQF +Y M+LNLL +V HL E +D + + G+ E+ +KL +Q
Sbjct: 687 PMKLSSQFRVTYSMILNLL---RVEHLRVEDMMKRSFGEDHQQSKLGKVKEQLQKLYDQ 742
>gi|340517763|gb|EGR48006.1| nuclear exosomal RNA helicase [Trichoderma reesei QM6a]
Length = 1098
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 221/647 (34%), Positives = 325/647 (50%), Gaps = 74/647 (11%)
Query: 70 ADEAADEYDDDIDDDDDEEAADEYD-------DVSGEVSDEIQQSDDEFEV-------SS 115
AD A D+ + +DD EA D D D +G V + Q+ + EV S
Sbjct: 62 ADAAETSRDEASEGEDDSEAPDHQDKKRRKKTDEAGPVMTDNFQTAESREVAGASTFVSQ 121
Query: 116 DSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGS 175
DSS S + + L E +E +E A Y F++D FQ S+ + R
Sbjct: 122 DSSLVLSHNIQHQVALPPDLNYEYIPL-SEHKSPEEPARTYPFKLDPFQSLSVASIEREE 180
Query: 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLT 235
SV+VSA TS+GKT++AE A + +R+ YT+P+KALSNQK+R+F FGD VGL+T
Sbjct: 181 SVLVSAHTSAGKTVVAEYAVAQCLKRNQRVIYTSPIKALSNQKYRDFEAIFGD--VGLMT 238
Query: 236 GDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWE 295
GD IN A L+MTTEILR+MLY+ ++ +V +V DE+HY+ D +RG VWE
Sbjct: 239 GDVTINPTASCLVMTTEILRSMLYRGSEIMR------EVAWVVFDEIHYMRDKTRGVVWE 292
Query: 296 EIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYF---STKT 351
E II P +V+ + LSAT+ NA + A WI +IH + ++ + RP PL YF K
Sbjct: 293 ETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFYPMGGKG 352
Query: 352 ALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQH 411
A + ++DE+G +L +EV+ K N++ +
Sbjct: 353 ARM-VVDERGTFNEENFNL-----VMAEVEEKKGSDPADFNAKMKGKGKNKKTNKGGADE 406
Query: 412 QLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECE 471
+ IN I R V ++ P I F F++R C+ + + N D+ E
Sbjct: 407 ---GSDINKIIRMTV-----------RKNFNPVIVFNFSKRECENMALKISNLNFNDDSE 452
Query: 472 MSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLV 526
+ V + +A RE P I+ LL KGV HH+G LPI K IE LFQ L+
Sbjct: 453 KAMVNKVFQSAIESLSEADRELPQIQNLLPLLQKGVGVHHSGLLPILKETIEILFQESLI 512
Query: 527 KVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVV 586
KV+FATET + G+NMPA+T V + ++K R +TS+E QMAGRAGRRG+D RG V+
Sbjct: 513 KVLFATETFSIGLNMPAKTVVFTQVTKWDGVQRRPITSSEYVQMAGRAGRRGLDARGVVI 572
Query: 587 LVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGR 646
++ E +++ + L S F Y M+LNLL ++ +S E
Sbjct: 573 MMIDDKLEPEVAKQIVTGQQDRLNSAFYLGYNMILNLL---RIEAISPEF---------- 619
Query: 647 SLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDA 693
++E+ F + + + A + +L +Q+E D LT I D+A
Sbjct: 620 -------MLERCFHQFQNAASVPALEKDLMALQQEKDALT--IPDEA 657
>gi|336268634|ref|XP_003349081.1| hypothetical protein SMAC_06856 [Sordaria macrospora k-hell]
gi|380093707|emb|CCC08671.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1294
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 202/597 (33%), Positives = 299/597 (50%), Gaps = 59/597 (9%)
Query: 69 DADEAADEYD--DDIDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAPSWREE 126
DA DE D D + ++ E+ D+ +D+ + E + +++ SS + RE
Sbjct: 239 DAPGGEDEKDEVDGVRREESEDNEDDSEDIDAILPVEFPALEPRGTLAA-SSARKAGRE- 296
Query: 127 FKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSG 186
W + + E+ F E+ V ++A + F +D FQ+ ++ G SV V+A TS+G
Sbjct: 297 --WAHMVDVRREIPNF-REL--VPDMAREWPFELDTFQKEAVYHLENGDSVFVAAHTSAG 351
Query: 187 KTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQI 246
KT++AE A + + YT+P+KALSNQKFR+FR+TF + VG+LTGD IN EA
Sbjct: 352 KTVVAEYAIALAAKHMTKAIYTSPIKALSNQKFRDFRQTF--DEVGILTGDVQINPEASC 409
Query: 247 LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 306
LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V
Sbjct: 410 LIMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDYERGVVWEEVIIMLPEHVT 463
Query: 307 IICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 365
+I LSATV N E A W+G+ K +I++ +RPVPL Y + ++D + K +
Sbjct: 464 LILLSATVPNTYEFASWVGRTKQKDIYVISTPKRPVPLEHYLWAGKKIHKIVDAEKKFLE 523
Query: 366 RKLSLNYLQLSTSEVKPY--------KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNS 417
L + + P GG+ +R R A +N +
Sbjct: 524 TGWKEANLSIQGKDKPPKAIEAPTGPARGGANQRG-RGGAQRGANQQRGGARGGGQQRGR 582
Query: 418 INAIRRSQVPQVI---------------DTLW-----HLRSRDMLPAIWFIFNRRGCDAA 457
R S P + LW L+ ++LPA F+F+++ C+
Sbjct: 583 GGPPRASHAPGHMGRTGRQGGFTSAAQDKNLWVHLVQFLKKENLLPACIFVFSKKRCEEN 642
Query: 458 VQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAI----KGLLKGVAAHHAGCLPI 512
L + + E S + + ++R L P+ P I + L +G+A HH G LPI
Sbjct: 643 ADALSNQDFCTAQEKSHIHMIIERSIARLKPEDRVLPQIIRLRELLSRGIAVHHGGLLPI 702
Query: 513 WKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAG 572
K +E LF LVKV+FATET A G+N+P RT V S K L E QMAG
Sbjct: 703 VKEMVEILFAETLVKVLFATETFAMGLNLPTRTVVFSGYRKHDGHSFRNLLPGEYTQMAG 762
Query: 573 RAGRRGIDNRGHVVLVQTPYEGAE-----ECCKLLFAGVEPLVSQFTASYGMVLNLL 624
RAGRRG+D G V++V P G E + +++ L SQF +Y M+LNLL
Sbjct: 763 RAGRRGLDTVGCVIIV--PPGGDEAPPVTDLRQMMLGEPSKLRSQFRLTYNMILNLL 817
>gi|68076467|ref|XP_680153.1| helicase [Plasmodium berghei strain ANKA]
gi|56501043|emb|CAH95426.1| helicase with Zn-finger motif, putative [Plasmodium berghei]
Length = 1346
Score = 295 bits (754), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 183/533 (34%), Positives = 281/533 (52%), Gaps = 55/533 (10%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
YDF +D FQ+ S++ V V+A TS+GKTLIAE A ++ ++ YT+P+KALS
Sbjct: 289 YDFELDDFQKRSVKHINNFKHVFVAAHTSAGKTLIAEHAIALSIKLNKKAIYTSPIKALS 348
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+ EF+ F NVG++TGD +N A LIMTTEILRN+LY + +++ ++
Sbjct: 349 NQKYYEFKNIFK--NVGIITGDVKMNVNANCLIMTTEILRNLLYLNDNIIN------NIH 400
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL-I 334
++ DEVHY++D RG +WEE II P VQI+ LSATV N + A W+G K + I
Sbjct: 401 CVIFDEVHYVNDEFRGVIWEESIIMLPPHVQIVLLSATVPNYLQFADWVGFTKQKEVIAI 460
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLST----------------- 377
++ +RPVPL Y +L ++DEK K + Y+++
Sbjct: 461 STKKRPVPLLHYIYAHDSLFLIMDEKNKFYSSAFKEIYIKIREKEESGKKGKELMGSSHG 520
Query: 378 -------SEVKPYKDGGSRRRNSRKHADMNS---NNIVTSFGQH-------QLSKNSINA 420
S+ K KD ++N A+ + NN V + Q+ ++ +N N
Sbjct: 521 GKKKIYYSDAKNNKDNQMEKQNKTGTANNSGDKQNNTVKGYYQYCKQKQKQRMFQNEANM 580
Query: 421 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK 480
++++ ++ + L + LP + F F+R C+ + + N LD + S+V L +K
Sbjct: 581 --KTEIQKLQALIKKLDEDNKLPVVLFCFSRIKCETYAKSMPHLNFLDNKKKSKVHLFIK 638
Query: 481 RFRILYPDAVRE-PAIKGLLK----GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 535
D RE IK L K G+ HH+G LPI K +E LF +GL+KV+FATET
Sbjct: 639 ESASKLCDQDRELNQIKILSKLLENGIGVHHSGLLPILKEIVEILFSKGLIKVLFATETF 698
Query: 536 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEG 594
A GINMPA++ + +S+ K + LTS+E QM+GRAGRR D+ G+V +
Sbjct: 699 AMGINMPAKSVIFTSIYKHDHLKKRILTSSEYTQMSGRAGRRSSDSYGYVYIYCSDNIPD 758
Query: 595 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV----MHLSNESDDMKALQ 643
+ +++ L S+F +Y M+L LL ++ M S+ + +ALQ
Sbjct: 759 QVQLTEMMMQKAVSLKSKFKVTYNMILKLLINKQINIEKMLFSSFLESCRALQ 811
>gi|239615085|gb|EEQ92072.1| DEAD/DEAH box RNA helicase [Ajellomyces dermatitidis ER-3]
Length = 1295
Score = 294 bits (753), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 206/618 (33%), Positives = 309/618 (50%), Gaps = 73/618 (11%)
Query: 69 DADEAADEYDDDIDDDDD--EEAADEYDDVSGEVSDEIQQ--SDDEFEVSSDS------- 117
DA + D + + D D+ +E +D + ++++E+Q+ S DE E DS
Sbjct: 235 DARDVEDTLEQEEKDTDEPTQEGVSPGEDRNLQITEELQEGLSSDEEEEDIDSLLPVEYP 294
Query: 118 --SP-----APSWREEFK-WQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIE 169
P AP+ ++ K W V + E+ F + + D +A + F +D FQ+ ++
Sbjct: 295 ALEPRGQLLAPTSKKGGKEWAHVVDINKEITNFYDLVPD---MAREWPFELDTFQKEAVY 351
Query: 170 AFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDN 229
G SV V+A TS+GKT++AE A + + YT+P+KALSNQKFR+FR TF D
Sbjct: 352 HLENGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYTSPIKALSNQKFRDFRTTFED- 410
Query: 230 NVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDIS 289
VG+LTGD IN EA LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++D+
Sbjct: 411 -VGILTGDVQINPEASCLIMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDLE 463
Query: 290 RGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFS 348
RG VWEE+II P+ V +I LSATV N E A W+G+ K +I++ +RPVPL Y
Sbjct: 464 RGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWVGRTKKKDIYVISTPKRPVPLEHYLW 523
Query: 349 TKTALLPLLD------EKG-----------------------KHMNRKLSLNYLQLSTSE 379
++ ++D EKG + N +
Sbjct: 524 ADKSMHKIVDSNKNFIEKGWKKADDILSGRDKLRAQKAAEAQSNTNNRGGHGDRGRGGQP 583
Query: 380 VKPYKDGGSRRRNS--RKHADMNSNNIVTSFGQHQLSKNSINAIRR--SQVPQV-IDTLW 434
+ + GG++R + R A S G +++ R +Q + + +
Sbjct: 584 QRGNQRGGAQRGGTQQRGSAQQRGRGQPVSRGTGNIARTGRGGGRTTVAQDRNIWVHLVQ 643
Query: 435 HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREP 493
HLR ++LPA F+F++R C+ L + + E S + + + K L + P
Sbjct: 644 HLRKENLLPACIFVFSKRRCEENADSLSNQDFCTASEKSTIHMIIEKSLARLKTEDRGLP 703
Query: 494 AIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
I+ L +G+ HH G LPI K +E LF + LVKV+FATET A G+N+P RT V S
Sbjct: 704 QIRRVRELLSRGIGVHHGGLLPIIKEIVEILFAKTLVKVLFATETFAMGLNLPTRTVVFS 763
Query: 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC---KLLFAGV 606
K L E QMAGRAGRRG+D G V++V + + A +++
Sbjct: 764 GFRKHDGRSFRDLLPGEYTQMAGRAGRRGLDTVGSVIIVASGKDEAPPAGTLRRMILGDP 823
Query: 607 EPLVSQFTASYGMVLNLL 624
L SQF +Y M+LNLL
Sbjct: 824 TKLRSQFRLTYNMILNLL 841
>gi|327349799|gb|EGE78656.1| DEAD/DEAH box RNA helicase [Ajellomyces dermatitidis ATCC 18188]
Length = 1317
Score = 294 bits (753), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 206/618 (33%), Positives = 309/618 (50%), Gaps = 73/618 (11%)
Query: 69 DADEAADEYDDDIDDDDD--EEAADEYDDVSGEVSDEIQQ--SDDEFEVSSDS------- 117
DA + D + + D D+ +E +D + ++++E+Q+ S DE E DS
Sbjct: 235 DARDVEDTLEQEEKDTDEPTQEGVSPGEDRNLQITEELQEGLSSDEEEEDIDSLLPVEYP 294
Query: 118 --SP-----APSWREEFK-WQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIE 169
P AP+ ++ K W V + E+ F + + D +A + F +D FQ+ ++
Sbjct: 295 ALEPRGQLLAPTSKKGGKEWAHVVDINKEITNFYDLVPD---MAREWPFELDTFQKEAVY 351
Query: 170 AFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDN 229
G SV V+A TS+GKT++AE A + + YT+P+KALSNQKFR+FR TF D
Sbjct: 352 HLENGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYTSPIKALSNQKFRDFRTTFED- 410
Query: 230 NVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDIS 289
VG+LTGD IN EA LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++D+
Sbjct: 411 -VGILTGDVQINPEASCLIMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDLE 463
Query: 290 RGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFS 348
RG VWEE+II P+ V +I LSATV N E A W+G+ K +I++ +RPVPL Y
Sbjct: 464 RGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWVGRTKKKDIYVISTPKRPVPLEHYLW 523
Query: 349 TKTALLPLLD------EKG-----------------------KHMNRKLSLNYLQLSTSE 379
++ ++D EKG + N +
Sbjct: 524 ADKSMHKIVDSNKNFIEKGWKKADDILSGRDKLRAQKAAEAQSNTNNRGGHGDRGRGGQP 583
Query: 380 VKPYKDGGSRRRNS--RKHADMNSNNIVTSFGQHQLSKNSINAIRR--SQVPQV-IDTLW 434
+ + GG++R + R A S G +++ R +Q + + +
Sbjct: 584 QRGNQRGGAQRGGTQQRGSAQQRGRGQPVSRGTGNIARTGRGGGRTTVAQDRNIWVHLVQ 643
Query: 435 HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREP 493
HLR ++LPA F+F++R C+ L + + E S + + + K L + P
Sbjct: 644 HLRKENLLPACIFVFSKRRCEENADSLSNQDFCTASEKSTIHMIIEKSLARLKTEDRGLP 703
Query: 494 AIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
I+ L +G+ HH G LPI K +E LF + LVKV+FATET A G+N+P RT V S
Sbjct: 704 QIRRVRELLSRGIGVHHGGLLPIIKEIVEILFAKTLVKVLFATETFAMGLNLPTRTVVFS 763
Query: 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC---KLLFAGV 606
K L E QMAGRAGRRG+D G V++V + + A +++
Sbjct: 764 GFRKHDGRSFRDLLPGEYTQMAGRAGRRGLDTVGSVIIVASGKDEAPPAGTLRRMILGDP 823
Query: 607 EPLVSQFTASYGMVLNLL 624
L SQF +Y M+LNLL
Sbjct: 824 TKLRSQFRLTYNMILNLL 841
>gi|317124910|ref|YP_004099022.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
gi|315588998|gb|ADU48295.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
43043]
Length = 959
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 195/560 (34%), Positives = 283/560 (50%), Gaps = 83/560 (14%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A+ +F +D FQ ++ A G V+V+APT +GKT++ E A + R+ FYTTP
Sbjct: 20 EFAAQLEFPLDDFQVAACRAVEEGRGVLVAAPTGAGKTVVGEFAVHLALQTGRKAFYTTP 79
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+ + G VGLLTGD++IN EA +++MTTE+LRNM+Y + S
Sbjct: 80 IKALSNQKYADLVRRHGVERVGLLTGDASINGEAPVVVMTTEVLRNMMY------AGSST 133
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L + +V+DEVHYL+D RG VWEE+II+ P +V ++ LSATV+NA+E W+ ++ G
Sbjct: 134 LEGLGWVVMDEVHYLADRFRGAVWEEVIIHLPPDVSVVSLSATVSNAEEFGAWLDEVRGD 193
Query: 331 TELITSSRRPVPLTWYFSTKTALLPL-----LDEKGKHMNR----KLSLN---YLQLSTS 378
T +I S RPVPL + +L L ++ +G+ + ++S+N + +
Sbjct: 194 TAVIVSEHRPVPLWQHMMVGQSLYDLFVEETVERRGRGADEPVRAEVSVNPDLVHAIRGT 253
Query: 379 EVKPYKD-----------------------------GGSRRRNSRKHADMNSNNIVTSFG 409
E + D GG RR S + + G
Sbjct: 254 EGRGAWDSHWSTNGRGRSRGGRGGPGGRGATRGDDWGGRGRRGSEQRGPGGGE---AARG 310
Query: 410 QHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL--- 466
+ + A R +VI+ L +LPAI FIF+R GC+AAV L +
Sbjct: 311 FSRGGRPGGGATR----AEVIE---RLDREGLLPAITFIFSRAGCEAAVGQLLASGMRLV 363
Query: 467 LDECEMSEVELALKRFRILYPDAVREPA----IKGLLKGVAAHHAGCLPIWKSFIEELFQ 522
D + L +R + L + + ++G+ +G AAHHAG LP ++ +EELF
Sbjct: 364 TDAQGAANRRLVEERVQGLAEEDLAVLGYWDFVEGITRGFAAHHAGMLPTFREIVEELFT 423
Query: 523 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 582
+G V+ VFATETLA GINMPART VL L K + +T E Q+ GRAGRRGID
Sbjct: 424 QGRVRAVFATETLALGINMPARTVVLEKLVKFNGESHVDITPAEYTQLTGRAGRRGIDIE 483
Query: 583 GHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKAL 642
GH V++ E L PL S F +Y M +NL+
Sbjct: 484 GHAVVLWNRGLDPESVAGLASTRTYPLRSSFRPTYNMAVNLVR----------------- 526
Query: 643 QAGRSLEEARKLVEQSFGNY 662
Q GR + AR+++E SF +
Sbjct: 527 QFGR--DSAREILETSFAQF 544
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 16/211 (7%)
Query: 957 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRG 1016
E+ RL+ ++ L ++IE S + F +I ++ L + I GE +
Sbjct: 746 ERWWRLQRETEGLQRKIEGRTNSVARTFDKICELLVAMGYLGEGGEQITEHGERLRQLYT 805
Query: 1017 ENELWLAMVLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSSIYEPSTTVI 1070
E +L A LR + L P LAAV + L+ E G+ R W N+ + E ++
Sbjct: 806 EKDLLAAECLREGVWRQLDPPSLAAVVSMLIHEPRREDGGLAPR-WPNDD-VREAHDRML 863
Query: 1071 NVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLA 1130
+ + L++ + + + D + V WASG E++ L GD
Sbjct: 864 AIWSDLEDAEGAL-------ALPMTGAPDPGIAWAVHRWASGRPLEEVLRGTELAAGDFV 916
Query: 1131 RLLRRTIDLLAQIPKLPDVD-QRLQKNAVDA 1160
R ++ IDLL Q+ D + QR+ + A DA
Sbjct: 917 RRCKQIIDLLGQLTDAGDRELQRVARKASDA 947
>gi|427783323|gb|JAA57113.1| Putative nuclear exosomal rna helicase mtr4 dead-box superfamily
[Rhipicephalus pulchellus]
Length = 1142
Score = 293 bits (750), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 192/494 (38%), Positives = 268/494 (54%), Gaps = 68/494 (13%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V + A + F +D FQ+ +I SV V+A TS+GKT++AE A + + R YT
Sbjct: 243 VPDPAFSWPFELDTFQKKAIAHLENRDSVFVAAHTSAGKTVVAEYAIALSRRHMTRTIYT 302
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSN+K+R+F+ETF D +GL+TGD IN+EA LIMTTEILR+MLY +V+
Sbjct: 303 SPIKALSNEKYRDFKETFTD--IGLITGDVQINKEASCLIMTTEILRSMLYNQSNVVA-- 358
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI- 327
D++ ++ DE HY++D RG VWEE++I P V ++ LSATV NA LA WIG+I
Sbjct: 359 ----DLEWVIFDECHYINDPDRGVVWEEVLIMLPSHVGLVLLSATVPNALSLANWIGRIK 414
Query: 328 HGKTELITSSRRPVPLT--WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
K +I +++RPVPL YF+ +T L +LD K + Y
Sbjct: 415 ERKLYVICTTQRPVPLEHHLYFNQETFL--ILDATNKF---------------QTASYMK 457
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
+RR+ + K + + + R Q + HLR D LPAI
Sbjct: 458 ACARRKETMK------------------ATRTYDDKTRYQ-----GLIQHLRKADRLPAI 494
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF-------RILYPDAVREP---AI 495
F +RR CD Q L+ +L +E + A++RF R+ D R P ++
Sbjct: 495 CFTLSRRRCDENAQLLQSLDL----TTAEEKGAVRRFLQNNVIARLSRADQ-RLPQLRSL 549
Query: 496 KGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554
+GLL+ G HH+G LPI K +E LFQRGLVKV+FATET A G+NMPART V S+ K
Sbjct: 550 RGLLEAGFGVHHSGVLPILKEAVEMLFQRGLVKVLFATETFAMGVNMPARTVVFDSIRKH 609
Query: 555 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQF 613
L E QMAGRAGRRG D G V+L+ + + + ++ L S+F
Sbjct: 610 DGISNRDLLPAEYIQMAGRAGRRGKDATGTVLLLCKGDVPESSQLQAMMLGRPTELQSRF 669
Query: 614 TASYGMVLNLLAGA 627
+Y M+LNL A A
Sbjct: 670 RVTYSMILNLKAQA 683
>gi|345491941|ref|XP_001599855.2| PREDICTED: helicase SKI2W-like [Nasonia vitripennis]
Length = 1153
Score = 293 bits (750), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 196/541 (36%), Positives = 282/541 (52%), Gaps = 49/541 (9%)
Query: 118 SPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSV 177
S AP + + KW + V +F ++ D A + + +D FQ+ +I V
Sbjct: 176 SEAPKYNMKTKWAEQIDIMIPVNDFDKKIPDP---AMTFPYELDTFQKQAILKLEEQCDV 232
Query: 178 VVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGD 237
V+A TS+GKT IAE A + + R YT+P+KALSNQKFREF+E F NVGL+TGD
Sbjct: 233 FVAAHTSAGKTTIAEYAIAMSQKHMTRTIYTSPIKALSNQKFREFKEKF--ENVGLITGD 290
Query: 238 SAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEI 297
I A LIMTTEIL++MLY + ++ DV+ ++ DEVHY+++ RG VWE++
Sbjct: 291 LQIEPTATCLIMTTEILQSMLYCAAEVIR------DVEYVIFDEVHYINNEDRGHVWEQV 344
Query: 298 IIYCPKEVQIICLSATVANADELAGWIGQI-HGKTELITSSRRPVPLTWYFST------K 350
II P V I+ LSATV N E A W+GQI K +I++ +RPVPL Y T K
Sbjct: 345 IILLPPTVNIVMLSATVPNPLEFAHWVGQIKRRKMYVISTVKRPVPLQHYLYTGCDKKSK 404
Query: 351 TALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQ 410
L L+D+ GK + + K ++ ++ R+ A + ++
Sbjct: 405 DQLFLLVDKDGKFIRSSIKEAIAIKKEQSANQKKSQQTKYQHQREQAKQKPSLTMSPSVL 464
Query: 411 HQLSK----NSINAIRRS------QVPQVIDT-----LW-----HLRSRDMLPAIWFIFN 450
LS +S+ A + QV Q + T +W HL+S D LP + FI +
Sbjct: 465 KNLSAAETLDSVAAAKEEEDKLEDQVRQQMITAKDKRMWVAFLDHLQSTDKLPVVIFILS 524
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG---LLK-GVAAH 505
R CD + +LL+ E V E K R L + P ++ LLK G+ H
Sbjct: 525 RNRCDKTANAFSE-SLLNHAEQRYVGEFFDKSIRHLKGTDSQLPQVRKMQRLLKLGIGVH 583
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
H+G LPI K +E LFQ+G+VKV+FATET A G+NMPA+T V S K + L
Sbjct: 584 HSGILPILKEIVEMLFQKGIVKVLFATETFAMGVNMPAKTVVFDSWEKYDGNSSRNLLPT 643
Query: 566 ELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
E QMAGRAGRRG D G V+++ + P E ++ ++ + L S+F +Y M+L+
Sbjct: 644 EYIQMAGRAGRRGHDETGTVIILCKKKVPEE--KDLRDMVLGAPQNLESKFKVTYSMILH 701
Query: 623 L 623
L
Sbjct: 702 L 702
>gi|443325910|ref|ZP_21054583.1| superfamily II RNA helicase [Xenococcus sp. PCC 7305]
gi|442794498|gb|ELS03912.1| superfamily II RNA helicase [Xenococcus sp. PCC 7305]
Length = 966
Score = 293 bits (750), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 217/692 (31%), Positives = 337/692 (48%), Gaps = 122/692 (17%)
Query: 495 IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554
++ LL+G+A+HHAG LP WK +E LF+ GLVK+VFAT TLAAGINMPART V+S+LSKR
Sbjct: 380 VEPLLRGIASHHAGLLPAWKELVERLFELGLVKIVFATATLAAGINMPARTTVISALSKR 439
Query: 555 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 614
T +G LT +E Q+AGRAGRRG D GHVV +QTP+EGA E L + EPL+S+FT
Sbjct: 440 TDAGHGMLTPSEFLQIAGRAGRRGKDPVGHVVTLQTPFEGAPEAVYLATSSPEPLMSRFT 499
Query: 615 ASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDE 674
SYGMVLNLL SL E ++L+ +SF Y+ + +
Sbjct: 500 PSYGMVLNLL-------------------QKHSLNEVKELLAKSFAEYLAQKKLAPEQQA 540
Query: 675 LCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELK 734
+ +I + L E++ ++S++ + ++E L E R L+++ E
Sbjct: 541 IAEITTQMAKLDVELA----------MISQSDFASYQKIKERLHEESRLFDTLKQQAEAS 590
Query: 735 RFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSF 794
R +K ++ G + + L+ K V + AV + K S + N+
Sbjct: 591 RKKEIKPLIAMLSPGRI--VGLKGKHIR-VSSPLAAVLVTKVPG--SGQADNL------- 638
Query: 795 ALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALP 854
V LGSDN WY I + +G+
Sbjct: 639 -----------------------VCLGSDNNWYVAANADITDI----------NEGEVPL 665
Query: 855 RETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFE 914
+E S+LL E +L + GG E S + +L+ ++ + + EV+
Sbjct: 666 QELESVLLPHLEK--PRLGKLQLGG----ETS-AIVAHNLSSYIIPQ-APAPEVI----- 712
Query: 915 YHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEE----KIKRLKARSKRLT 970
EQ+ K+ ++++++ +YK + +K ++ + K K+++K
Sbjct: 713 ---------EQQQKIEQIEERL-DAHPLNQYKNLNQLLKKQQKRDFLRNKLHKSQTKYQK 762
Query: 971 KRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKI 1030
++ Q W++FL + V+ E ALD LG+ AA IRG+NELWLA+ R+
Sbjct: 763 HKLNQ--SYYWEDFLNLIKVLQEFSALDGYNPTA--LGQAAATIRGDNELWLAIAFRSGE 818
Query: 1031 LLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINV-------------LD 1077
L +L P LAA ++LV+E + +W Y P+ V+ + + L
Sbjct: 819 LDNLAPHHLAAAVSALVTETPRGDIWCE----YAPAPEVLEALGIQRRQPEQEATTSTLR 874
Query: 1078 EHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTI 1137
E R ++Q ++GV P + + G+ E WA G+ W E+ + L +GD+ R+LRRTI
Sbjct: 875 ELRPHLFQVQHRYGVGCPIWREYELVGLAENWALGVEWNELCDNTNLAEGDIVRMLRRTI 934
Query: 1138 DLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 1169
D+L QIP++P + L NA DA + M R PI
Sbjct: 935 DVLLQIPQIPYIPSGLVNNARDAVSAMKRFPI 966
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 143/342 (41%), Positives = 193/342 (56%), Gaps = 52/342 (15%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
L ++ F +D+FQ +I A SVVV APT SGKTLI E A +A +R+FYTTPL
Sbjct: 9 LPELFPFELDEFQHQAIAALNADKSVVVCAPTGSGKTLIGEYAIYRALARGKRVFYTTPL 68
Query: 212 KALSNQKFREFRETFGDNN---VGLLTGDSAINREAQILIMTTEILRNMLYQS-VGMVSS 267
KALSNQKFR+F+ FG N VGL+TGD IN A I+IMTTEI RNMLY++ +G V
Sbjct: 69 KALSNQKFRDFQNQFGTYNGASVGLITGDIIINANADIIIMTTEIFRNMLYETPIGQVG- 127
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
+ L ++D +VLDE HYL + RGTVWEE IIY P ++Q++ LSATV N +EL WI Q+
Sbjct: 128 -TSLENLDAVVLDECHYLGNRGRGTVWEECIIYAPPQIQLVALSATVGNPEELTDWIVQV 186
Query: 328 HGKT-------ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 380
+ +L+ S RPVPL ++F + + PLLD K +N KL +
Sbjct: 187 RNQNNQRQYDCQLVNSDFRPVPLRYFFCDRNQMYPLLDSKQTKLNPKL---------KSL 237
Query: 381 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 440
P K G R+R ++ + P L L+ +D
Sbjct: 238 IP-KRGSKRKR-----------------------------LKLKECPNTFRVLQELKVKD 267
Query: 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF 482
MLPAI+ IF+RRGCD AV+ L++ +L+ E ++E L F
Sbjct: 268 MLPAIYIIFSRRGCDRAVEQLDNISLVKAEEAQQIEGFLLHF 309
>gi|378729065|gb|EHY55524.1| hypothetical protein HMPREF1120_03657 [Exophiala dermatitidis
NIH/UT8656]
Length = 1075
Score = 293 bits (750), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 176/482 (36%), Positives = 263/482 (54%), Gaps = 35/482 (7%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A + F++D FQ+ SI + R SV+VSA TS+GKT++AE A + N +R+ YT+P
Sbjct: 147 EPARTWKFQLDPFQQVSIASIERNESVLVSAHTSAGKTVVAEYAIAQCLKNNQRVIYTSP 206
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+REF+ FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 207 IKALSNQKYREFQADFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR---- 260
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V ++ DE+HYL D +RG VWEE II P +V+ + LSAT+ NA + A WI + H +
Sbjct: 261 --EVGWVIFDEIHYLRDKTRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKTHNQ 318
Query: 331 -TELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL YF A + ++DEKG ++ + +
Sbjct: 319 PCHVVYTDFRPTPLQHYFFPAGADGIHLIVDEKGVFREDNFQKAMSTIAAKQGDDPANAM 378
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+RR+ K +N G ++ + +R + +++ P I F
Sbjct: 379 ARRKGRGKDKKLNK-------GGNKGPSDIYKIVR------------MIMTKNYNPVIVF 419
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGV 502
F++R C+A + + DE E + V +L P+ P I+ LL +G+
Sbjct: 420 SFSKRDCEAYAIQMSTMSFNDESEKAMVSKVFDSALEMLSPEDKNLPQIQHLLPLLRRGI 479
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K + +
Sbjct: 480 GIHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGISQRWV 539
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
T +E QM+GRAGRRG+D RG V+++ +++ + L S F Y M+LN
Sbjct: 540 TPSEFIQMSGRAGRRGLDERGIVIMMIDEQMEPTVAKEIVRGEQDKLNSAFYLGYNMILN 599
Query: 623 LL 624
LL
Sbjct: 600 LL 601
>gi|221504778|gb|EEE30443.1| DEAD/DEAH box helicase domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 1329
Score = 293 bits (750), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 183/500 (36%), Positives = 270/500 (54%), Gaps = 33/500 (6%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
LA + F +D FQ+ +I + +V V+A TS+GKT++AE A V RR YT+PL
Sbjct: 450 LALEFPFPLDDFQKRAILHLEKYQTVFVAAHTSAGKTVVAEYAIALAVRRNRRCIYTSPL 509
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+REFR F +VG++TGD IN +A LI+TTEILR++LY ++
Sbjct: 510 KALSNQKYREFRLKF--PSVGIVTGDVCINPDANCLIVTTEILRSLLYLGDALIGQ---- 563
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
VD ++ DE HY++DI RG VWEE II PK+V ++ LSAT+ N + A WIG + +
Sbjct: 564 --VDSVIFDEAHYINDIERGVVWEEAIILLPKQVNMVLLSATLPNYRQFAEWIGSVKQRE 621
Query: 332 EL-ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQL------STSEVKPYK 384
+++ RRP PL + L+D KG+ + + + + P
Sbjct: 622 VFTLSTDRRPTPLRHFLFFHDKAFLLMDAKGRFQAGAYNEAFKHVREKGNPQAARKPPPS 681
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKN---SINAIRRSQVPQVIDTLWHLRSRDM 441
R R + A S+ HQ SK + A ++++ ++ + L +
Sbjct: 682 SAAQRGRGGTRQALRESS--------HQSSKGVFQTAEAKLKTEIHRLQGLITKLEKDNE 733
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVRE-PAIK--- 496
LP + F F+RR C+ Q + ++ L + S++ L +K + A R+ P I+
Sbjct: 734 LPVVVFCFSRRKCETYAQAMRRLDVVLSHNDRSKIHLFVKDCLMALSPADRDLPQIRFVC 793
Query: 497 GLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
GL+ +GV HH G LPI K +E LFQRGLV+V+FATETLA G+NMPAR+ V S+L K
Sbjct: 794 GLIHRGVGIHHGGLLPIIKEMVEILFQRGLVRVLFATETLAIGLNMPARSVVFSALKKHD 853
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFT 614
L ++E QMAGRAGRRGID GHV + +E ++ PL S+F
Sbjct: 854 GQRSRMLLASEYTQMAGRAGRRGIDTFGHVYIFCSDDLPEPKELTGMMVEKANPLHSRFR 913
Query: 615 ASYGMVLNLLAGAKVMHLSN 634
+Y +L L A + M +++
Sbjct: 914 LTYQTLLLLAARSHSMSMTS 933
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 17/180 (9%)
Query: 989 NVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVS 1048
V+ + + +D +T + G A + +EL L +L L +L+P ++AAV ++ V+
Sbjct: 1140 TVMKKLKLIDDHTGALTVKGRVACQVMSGDELTLTELLFQGGLENLQPEEIAAVLSAFVA 1199
Query: 1049 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPC-----CLDSQFS 1103
V + P+ + V + +E + L+LQ GV I + S
Sbjct: 1200 PDGPV------EQVPAPTAGIQRVRDQAEELHVAILKLQANSGVRINAEDWWKLCNFSLS 1253
Query: 1104 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL------PDVDQRLQKNA 1157
+ WA+G+++ ++M +G + R + R +LL +I + PD+ +LQ+ +
Sbjct: 1254 LVAYDWANGVSFGDIMHKTNAQEGSIVRAILRLDELLRKIRQAAILIGDPDLGAKLQQTS 1313
>gi|237839813|ref|XP_002369204.1| DEAD/DEAH box helicase domain-containing protein [Toxoplasma gondii
ME49]
gi|211966868|gb|EEB02064.1| DEAD/DEAH box helicase domain-containing protein [Toxoplasma gondii
ME49]
Length = 1329
Score = 293 bits (750), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 183/500 (36%), Positives = 270/500 (54%), Gaps = 33/500 (6%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
LA + F +D FQ+ +I + +V V+A TS+GKT++AE A V RR YT+PL
Sbjct: 450 LALEFPFPLDDFQKRAILHLEKYQTVFVAAHTSAGKTVVAEYAIALAVRRNRRCIYTSPL 509
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+REFR F +VG++TGD IN +A LI+TTEILR++LY ++
Sbjct: 510 KALSNQKYREFRLKF--PSVGIVTGDVCINPDANCLIVTTEILRSLLYLGDALIGQ---- 563
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
VD ++ DE HY++DI RG VWEE II PK+V ++ LSAT+ N + A WIG + +
Sbjct: 564 --VDSVIFDEAHYINDIERGVVWEEAIILLPKQVNMVLLSATLPNYRQFAEWIGSVKQRE 621
Query: 332 EL-ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQL------STSEVKPYK 384
+++ RRP PL + L+D KG+ + + + + P
Sbjct: 622 VFTLSTDRRPTPLRHFLFFHDKAFLLMDAKGRFQAGAYNEAFKHVREKGNPQAARKPPPS 681
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKN---SINAIRRSQVPQVIDTLWHLRSRDM 441
R R + A S+ HQ SK + A ++++ ++ + L +
Sbjct: 682 SAAQRGRGGTRQALRESS--------HQSSKGVFQTAEAKLKTEIHRLQGLITKLEKDNE 733
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVRE-PAIK--- 496
LP + F F+RR C+ Q + ++ L + S++ L +K + A R+ P I+
Sbjct: 734 LPVVVFCFSRRKCETYAQAMRRLDVVLSHNDRSKIHLFVKDCLMALSPADRDLPQIRFVC 793
Query: 497 GLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
GL+ +GV HH G LPI K +E LFQRGLV+V+FATETLA G+NMPAR+ V S+L K
Sbjct: 794 GLIHRGVGIHHGGLLPIIKEMVEILFQRGLVRVLFATETLAIGLNMPARSVVFSALKKHD 853
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFT 614
L ++E QMAGRAGRRGID GHV + +E ++ PL S+F
Sbjct: 854 GQRSRMLLASEYTQMAGRAGRRGIDTFGHVYIFCSDDLPEPKELTGMMVEKANPLHSRFR 913
Query: 615 ASYGMVLNLLAGAKVMHLSN 634
+Y +L L A + M +++
Sbjct: 914 LTYQTLLLLAARSHSMSMTS 933
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 17/180 (9%)
Query: 989 NVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVS 1048
V+ + + +D +T + G A + +EL L +L L +L+P ++AAV ++ V+
Sbjct: 1140 TVMKKLKLIDDHTGALTVKGRVACQVMSGDELTLTELLFQGGLENLQPEEIAAVLSAFVA 1199
Query: 1049 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPC-----CLDSQFS 1103
V + P+ + V + +E + L+LQ GV I + S
Sbjct: 1200 PDGPV------EQVPAPTAGIQRVRDQAEELHVAILKLQANSGVRINAEDWWKLCNFSLS 1253
Query: 1104 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL------PDVDQRLQKNA 1157
+ WA+G+++ ++M +G + R + R +LL +I + PD+ +LQ+ +
Sbjct: 1254 LVAYDWANGVSFGDIMHKTNAQEGSIVRAILRLDELLRKIRQAAILIGDPDLGAKLQQTS 1313
>gi|427793717|gb|JAA62310.1| Putative nuclear exosomal rna helicase mtr4 dead-box superfamily,
partial [Rhipicephalus pulchellus]
Length = 1160
Score = 293 bits (750), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 192/494 (38%), Positives = 268/494 (54%), Gaps = 68/494 (13%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V + A + F +D FQ+ +I SV V+A TS+GKT++AE A + + R YT
Sbjct: 261 VPDPAFSWPFELDTFQKKAIAHLENRDSVFVAAHTSAGKTVVAEYAIALSRRHMTRTIYT 320
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSN+K+R+F+ETF D +GL+TGD IN+EA LIMTTEILR+MLY +V+
Sbjct: 321 SPIKALSNEKYRDFKETFTD--IGLITGDVQINKEASCLIMTTEILRSMLYNQSNVVA-- 376
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI- 327
D++ ++ DE HY++D RG VWEE++I P V ++ LSATV NA LA WIG+I
Sbjct: 377 ----DLEWVIFDECHYINDPDRGVVWEEVLIMLPSHVGLVLLSATVPNALSLANWIGRIK 432
Query: 328 HGKTELITSSRRPVPLT--WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
K +I +++RPVPL YF+ +T L +LD K + Y
Sbjct: 433 ERKLYVICTTQRPVPLEHHLYFNQETFL--ILDATNKF---------------QTASYMK 475
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
+RR+ + K + + + R Q + HLR D LPAI
Sbjct: 476 ACARRKETMK------------------ATRTYDDKTRYQ-----GLIQHLRKADRLPAI 512
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF-------RILYPDAVREP---AI 495
F +RR CD Q L+ +L +E + A++RF R+ D R P ++
Sbjct: 513 CFTLSRRRCDENAQLLQSLDL----TTAEEKGAVRRFLQNNVIARLSRADQ-RLPQLRSL 567
Query: 496 KGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554
+GLL+ G HH+G LPI K +E LFQRGLVKV+FATET A G+NMPART V S+ K
Sbjct: 568 RGLLEAGFGVHHSGVLPILKEAVEMLFQRGLVKVLFATETFAMGVNMPARTVVFDSIRKH 627
Query: 555 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQF 613
L E QMAGRAGRRG D G V+L+ + + + ++ L S+F
Sbjct: 628 DGISNRDLLPAEYIQMAGRAGRRGKDATGTVLLLCKGDVPESSQLQAMMLGRPTELQSRF 687
Query: 614 TASYGMVLNLLAGA 627
+Y M+LNL A A
Sbjct: 688 RVTYSMILNLKAQA 701
>gi|221484584|gb|EEE22878.1| DEAD/DEAH box helicase domain-containing protein, putative
[Toxoplasma gondii GT1]
Length = 1329
Score = 293 bits (750), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 183/500 (36%), Positives = 270/500 (54%), Gaps = 33/500 (6%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
LA + F +D FQ+ +I + +V V+A TS+GKT++AE A V RR YT+PL
Sbjct: 450 LALEFPFPLDDFQKRAILHLEKYQTVFVAAHTSAGKTVVAEYAIALAVRRNRRCIYTSPL 509
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+REFR F +VG++TGD IN +A LI+TTEILR++LY ++
Sbjct: 510 KALSNQKYREFRLKF--PSVGIVTGDVCINPDANCLIVTTEILRSLLYLGDALIGQ---- 563
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
VD ++ DE HY++DI RG VWEE II PK+V ++ LSAT+ N + A WIG + +
Sbjct: 564 --VDSVIFDEAHYINDIERGVVWEEAIILLPKQVNMVLLSATLPNYRQFAEWIGSVKQRE 621
Query: 332 EL-ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQL------STSEVKPYK 384
+++ RRP PL + L+D KG+ + + + + P
Sbjct: 622 VFTLSTDRRPTPLRHFLFFHDKAFLLMDAKGRFQAGAYNEAFKHVREKGNPQAARKPPPS 681
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKN---SINAIRRSQVPQVIDTLWHLRSRDM 441
R R + A S+ HQ SK + A ++++ ++ + L +
Sbjct: 682 SAAQRGRGGTRQALRESS--------HQSSKGVFQTAEAKLKTEIHRLQGLITKLEKDNE 733
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVRE-PAIK--- 496
LP + F F+RR C+ Q + ++ L + S++ L +K + A R+ P I+
Sbjct: 734 LPVVVFCFSRRKCETYAQAMRRLDVVLSHNDRSKIHLFVKDCLMALSPADRDLPQIRFVC 793
Query: 497 GLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
GL+ +GV HH G LPI K +E LFQRGLV+V+FATETLA G+NMPAR+ V S+L K
Sbjct: 794 GLIHRGVGIHHGGLLPIIKEMVEILFQRGLVRVLFATETLAIGLNMPARSVVFSALKKHD 853
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFT 614
L ++E QMAGRAGRRGID GHV + +E ++ PL S+F
Sbjct: 854 GQRSRMLLASEYTQMAGRAGRRGIDTFGHVYIFCSDDLPEPKELTGMMVEKANPLHSRFR 913
Query: 615 ASYGMVLNLLAGAKVMHLSN 634
+Y +L L A + M +++
Sbjct: 914 LTYQTLLLLAARSHSMSMTS 933
Score = 45.4 bits (106), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 17/180 (9%)
Query: 989 NVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVS 1048
V+ + + +D +T + G A + +EL L +L L +L+P ++AAV ++ V+
Sbjct: 1140 TVMKKLKLIDDHTGALTVKGRVACQVMSGDELTLTELLFQGGLENLQPEEIAAVLSAFVA 1199
Query: 1049 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPC-----CLDSQFS 1103
V + P+ + V + +E + L+LQ GV I + S
Sbjct: 1200 PDGPV------EQVPAPTAGIQRVRDQAEELHVAILKLQANSGVRINAEDWWKLCNFSLS 1253
Query: 1104 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL------PDVDQRLQKNA 1157
+ WA+G+++ ++M +G + R + R +LL +I + PD+ +LQ+ +
Sbjct: 1254 LVAYDWANGVSFGDIMHKTNAQEGSIVRAILRLDELLRKIRQAAILIGDPDLGAKLQQTS 1313
>gi|408395128|gb|EKJ74315.1| hypothetical protein FPSE_05612 [Fusarium pseudograminearum CS3096]
Length = 1267
Score = 293 bits (750), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 182/514 (35%), Positives = 263/514 (51%), Gaps = 48/514 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V ++A + F +D FQ+ ++ G SV V+A TS+GKT++AE A + + YT
Sbjct: 288 VPDMAREWPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYT 347
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR+TF + VG+LTGD IN EA LIMTTEILR+MLY+ ++
Sbjct: 348 SPIKALSNQKFRDFRQTF--DEVGILTGDVQINPEASCLIMTTEILRSMLYRGADIIR-- 403
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D RG VWEE+II P+ V +I LSATV N E A W+G+
Sbjct: 404 ----DVEFVIFDEVHYVNDFERGVVWEEVIIMLPEHVSLILLSATVPNTKEFASWVGRTK 459
Query: 329 GK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLS------TSEVK 381
K +I++ +RPVPL Y + ++D + K + + + + +E
Sbjct: 460 QKDIYVISTPKRPVPLEHYLWAGKDIHKIVDSEKKFIEKGWKDAHFAIQGRDKQKPAETT 519
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI----------- 430
GG+ R N R + R S P +
Sbjct: 520 VATRGGNPRGNQRGGTQRGGRGGGQQQRGGNQQRGRGGPPRASHAPGHMGRGGRAGGFTS 579
Query: 431 ----DTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-K 480
LW +L+ + +LPA F+F+++ C+ L + + E S + + + K
Sbjct: 580 VAQDKNLWVHLVQYLKKQTLLPACIFVFSKKRCEENADALSNQDFCTASEKSHIHMIIEK 639
Query: 481 RFRILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA 536
L PD + P I + L +G+A HH G LPI K +E LF + LVKV+FATET A
Sbjct: 640 SVARLKPDDRQLPQIVRLRELLSRGIAVHHGGLLPIVKELVEILFAQTLVKVLFATETFA 699
Query: 537 AGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE 596
G+N+P RT V S K L E QMAGRAGRRG+D G V++V P G +
Sbjct: 700 MGLNLPTRTVVFSGYRKHDGHSFRNLLPGEYTQMAGRAGRRGLDTVGSVIIV--PPGGLD 757
Query: 597 ECC------KLLFAGVEPLVSQFTASYGMVLNLL 624
+ ++ L SQF +Y M+LNLL
Sbjct: 758 DAPPVADLRNMILGEPSKLRSQFRLTYNMILNLL 791
>gi|195999190|ref|XP_002109463.1| hypothetical protein TRIADDRAFT_21387 [Trichoplax adhaerens]
gi|190587587|gb|EDV27629.1| hypothetical protein TRIADDRAFT_21387, partial [Trichoplax
adhaerens]
Length = 937
Score = 293 bits (750), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 193/536 (36%), Positives = 284/536 (52%), Gaps = 73/536 (13%)
Query: 148 DVDELASI-------YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA 200
DVD+ SI + F +D FQ+ +I + +V V+A TS+GKT++AE A
Sbjct: 12 DVDKFHSIVPNMAFTWPFELDAFQKQAIMKLEKHENVFVAAHTSAGKTVVAEYAIALASK 71
Query: 201 NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQ 260
+ + YT+P+KALSNQKFR+F+ TFGD VGLLTGD IN EA LIMTTEILR+MLY
Sbjct: 72 HVTKAIYTSPIKALSNQKFRDFKMTFGD--VGLLTGDVQINPEASCLIMTTEILRSMLYN 129
Query: 261 SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 320
+ D++ ++ DEVHY++D RG VWEE++I P V +I LSATV+N+DEL
Sbjct: 130 GSDTIR------DIEWVIFDEVHYINDDERGVVWEEVVILLPDHVGLILLSATVSNSDEL 183
Query: 321 AGWIGQIHGK-TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMN-----RKL 368
A W+G+ K +I++++RPVPL + T L+ + D K M +
Sbjct: 184 ADWVGRTKRKQIHVISTTKRPVPLEHFLYRSPNQKTDKDLIKIFDIYYKLMGVIFRYQSN 243
Query: 369 SLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ 428
SL + KP GG + + K A Q+ ++ I + + P
Sbjct: 244 SLREAFKRPTSTKPTPKGG---KPTTKEA--------------QIYQSLIKNLIKKDPP- 285
Query: 429 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYP 487
M+PA+ F+F+R+ CD L NL + E S+++ +K+ IL
Sbjct: 286 ------------MVPAVVFVFSRKKCDNLAGSLSTANLTTKDEKSKIKRFIKKSISILSD 333
Query: 488 DAVREPAIKGLLK----GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 543
+ P + L + GVA HH+G LP+ K +E ++Q GLVK +FATET A G+NMPA
Sbjct: 334 KDQKLPQVVWLCEMLQLGVAVHHSGILPVLKEIVEMVYQEGLVKCLFATETFAMGVNMPA 393
Query: 544 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 603
+ + ++SK + R +L E QMAGRAGRRG D G V+++ + +++
Sbjct: 394 KCVIFDTISKHDGNSRRRLHPGEYIQMAGRAGRRGKDKTGTVIMLLKEEINEIDLRQMIT 453
Query: 604 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSN-ESDDMKALQAGRSLEEARKLVEQS 658
+ L S+F +YGM L KV+ + N E +D+ RS E K V +S
Sbjct: 454 GKPQKLQSKFRLTYGMAL------KVLRVENLEVEDL----MWRSFAELHKQVRKS 499
>gi|328865535|gb|EGG13921.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum]
Length = 1279
Score = 293 bits (749), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 184/481 (38%), Positives = 259/481 (53%), Gaps = 40/481 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A +Y F +D FQ+ +I +G SV +SA TS+GKT+IAE A N R YT+P+K
Sbjct: 365 AIVYPFELDSFQKQAIVHMEKGESVFISAHTSAGKTVIAEYAIAMAAKNMTRAIYTSPIK 424
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFR+F+ TFGD VGL+TGD +++ + L++TTEILR+MLY+ ++
Sbjct: 425 ALSNQKFRDFKNTFGD--VGLITGDVSVSPASSCLVLTTEILRSMLYKGADLIR------ 476
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 331
D++ ++ DEVHYL+D RG VWEE+II P V+II LSATVAN E A WIG+
Sbjct: 477 DIEWVIFDEVHYLNDYERGVVWEEVIIMLPAHVKIILLSATVANPLEFADWIGRTKKMPI 536
Query: 332 ELITSSRRPVPLTWYFSTKTA-LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
+I + +RPVPL + T + L ++D NR N+L +G S
Sbjct: 537 YVIGTLKRPVPLEHFIHTPSNDLFKIVDS-----NR----NFLM----------EGYSNA 577
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
NS D N++ + GQH ++ S ++ ++ ++I L + + LP I F F+
Sbjct: 578 YNSLYKVDKNNDKNKKTTGQHG-NQASFASVSKTGWTRLIGLL---KEKQQLPVIVFSFS 633
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEV-----ELALKRFRILYPDAVREPAIKGLL-KGVAA 504
+ C Q L +L + E +L R R D + IK L +G+
Sbjct: 634 KNKCQEYAQSLGGHLVLTSNSEKNIIKIFIEESLARLRPEDKDLPQIHQIKDFLERGIGI 693
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH G LPI K +E LF + LVKV+FATET A G+NMPA+T V S K L
Sbjct: 694 HHGGLLPIVKELVEILFSKSLVKVLFATETFAMGVNMPAKTVVYSHTRKHDGINFRDLLP 753
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQ-TPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E QM+GRAGRRG+D G V++ + ++ L SQF +Y M+LNL
Sbjct: 754 GEYTQMSGRAGRRGLDKVGTVIITAWKDMPDSSSYSSMILGQPSKLNSQFRLTYNMILNL 813
Query: 624 L 624
L
Sbjct: 814 L 814
>gi|297819300|ref|XP_002877533.1| hypothetical protein ARALYDRAFT_323324 [Arabidopsis lyrata subsp.
lyrata]
gi|297323371|gb|EFH53792.1| hypothetical protein ARALYDRAFT_323324 [Arabidopsis lyrata subsp.
lyrata]
Length = 1369
Score = 293 bits (749), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 183/502 (36%), Positives = 272/502 (54%), Gaps = 39/502 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V ++A + F +D FQ+ +I +G SV V+A TS+GKT++AE A + R YT
Sbjct: 363 VPDMAIEFPFELDNFQKEAICCLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 422
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
P+K +SNQK+R+F F +VGLLTGD +I EA LIMTTEILR+MLY+ ++
Sbjct: 423 APIKTISNQKYRDFCGKF---DVGLLTGDVSIRPEASCLIMTTEILRSMLYRGADIIR-- 477
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D+ RG VWEE+II P+ + + LSATV N E A WIG+
Sbjct: 478 ----DIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTFEFADWIGRTK 533
Query: 329 GKTELIT-SSRRPVPL--TWYFSTK-------TALLPLLDEKGKHMNRKLSLNYLQLSTS 378
K +T +++RPVPL ++S + +P + K +K + N + ++
Sbjct: 534 QKEIRVTGTTKRPVPLEHCLFYSGELYKVCENEVFIPKGIKDAKDSQKKKTSNAVSVAPK 593
Query: 379 EV---KPYKDGG-SRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN--AIRRSQVPQVIDT 432
+ ++DG S++ + N ++ G+ S NS N A RRS +
Sbjct: 594 QYTGSSAHQDGNKSQKHEAHSRGKQNKHSSAKDVGKSSYSGNSQNNGAFRRSAASNWLLL 653
Query: 433 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRIL------ 485
+ L + +LP + F F++ CD L +L E SE+ L K F L
Sbjct: 654 INKLSKKSLLPVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRLFCDKAFSRLKGSDRN 713
Query: 486 YPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
P +R ++ L +G+ HHAG LPI K +E LF RG++KV+F+TET A G+N PART
Sbjct: 714 LPQVLRVQSL--LHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPART 771
Query: 546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLL 602
V +L K QL E QMAGRAGRRG+D G VV++ + P E + +++
Sbjct: 772 VVFDALRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDEVPDES--DLRRVI 829
Query: 603 FAGVEPLVSQFTASYGMVLNLL 624
L SQF +Y M+L+LL
Sbjct: 830 VGSATRLESQFRLTYIMILHLL 851
>gi|387593908|gb|EIJ88932.1| ATP-dependent DEAD/H RNA helicase [Nematocida parisii ERTm3]
gi|387595891|gb|EIJ93514.1| ATP-dependent DEAD/H RNA helicase [Nematocida parisii ERTm1]
Length = 976
Score = 293 bits (749), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 184/486 (37%), Positives = 259/486 (53%), Gaps = 54/486 (11%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
Y F++DKFQ +++ R S++VSA TS+GKTL+AE A ++ ++R+ YT+P+KALS
Sbjct: 71 YPFKLDKFQELALQCLERDESLLVSAHTSAGKTLVAEYAIHLSIQRKQRVIYTSPIKALS 130
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+RE E FGD VGL+TGD +N ++ ++MTTEILRNM+Y+ + L +
Sbjct: 131 NQKYRELNEKFGD--VGLMTGDVTLNPDSTCIVMTTEILRNMIYRGTEI------LRETH 182
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
+V DEVHY+ D RG VWEE II P ++ I LSAT+ NA+E A WI IH + +I
Sbjct: 183 FVVFDEVHYMRDRERGVVWEETIILLPSTIRFIFLSATIPNAEEFARWIVSIHKQPCHVI 242
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS- 393
+ +RP PL Y ++ GK S +KP GG + S
Sbjct: 243 YTEKRPTPLEHYV--------YVNAPGK--------------ASVIKP---GGQLKSISD 277
Query: 394 ------RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
K S NI Q S RR ++ V+D L L+S + LP I F
Sbjct: 278 QLFVMVDKDGAFQSKNIARI---QQRPAGSTGYTRRREMINVVDILRILKSTNNLPTIIF 334
Query: 448 IFNRRGCDAAVQYLE---DCNLLDECEMSEVELALKRFRILYPDAVREPAIKG----LLK 500
F R+ C+ E D N ++ EM + + L + + P I G LL+
Sbjct: 335 SFRRKECEVYAMVAEKEFDFNTEEDKEMIDT-IFTNALTTLREEDRKLPQILGLKALLLR 393
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+ HH+G +PI K IE LFQ L+KV+FATET + G+NMPA++ + +S+ K
Sbjct: 394 GIGVHHSGLMPIVKEIIEILFQENLLKVLFATETFSIGLNMPAKSVIFTSIKKFDGVQTR 453
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLV--QTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
+TS E QM+GRAGRRG D G+V+L T +E K+L L S F SY
Sbjct: 454 FITSGEYIQMSGRAGRRGTDKIGNVILALESTLTLSEKEIKKVLHGPSNTLDSAFKLSYN 513
Query: 619 MVLNLL 624
+LN+L
Sbjct: 514 TILNIL 519
>gi|346319011|gb|EGX88613.1| DEAD/DEAH box RNA helicase Ski2, putative [Cordyceps militaris
CM01]
Length = 1207
Score = 293 bits (749), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 183/509 (35%), Positives = 268/509 (52%), Gaps = 56/509 (11%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W + + NE+ F E+ V ++A + F +D FQ+ ++ G SV V+A TS+GK
Sbjct: 267 EWAHMVDIRNEMTNF-REL--VPDMAREWPFELDTFQKEAVYHLENGDSVFVAAHTSAGK 323
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A + + YT+P+KALSNQKFR+FRETF + VG+LTGD IN EA L
Sbjct: 324 TVVAEYAIALAAKHMTKAIYTSPIKALSNQKFRDFRETF--DEVGILTGDVQINPEASCL 381
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ + +
Sbjct: 382 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDYERGVVWEEVIIMLPEHISL 435
Query: 308 ICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366
I LSATV N E A W+G+ K +I++++RPVPL Y + ++D K +
Sbjct: 436 ILLSATVPNTHEFASWVGRTKQKDIYVISTAKRPVPLEHYVWAGKDIHKIVDSDKKFIE- 494
Query: 367 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 426
K +KD HA S + + A R +Q
Sbjct: 495 --------------KGWKDA---------HATFQSKD-------KPKGAETTVATRGAQD 524
Query: 427 PQV-IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR--FR 483
+ + + +L+ +LPA F+F+++ C+ L + + E S + + +++ R
Sbjct: 525 KNLWVHLVQYLKRNTLLPACIFVFSKKRCEENADALSNQDFCTASEKSHIHMIIEKSIAR 584
Query: 484 I-----LYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 538
+ L P +R + G +G+A HH G LPI K +E LF LVKV+FATET A G
Sbjct: 585 LKPEDRLLPQIIRLRELLG--RGIAVHHGGLLPIVKELVEILFAETLVKVLFATETFAMG 642
Query: 539 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 598
+N+P RT V S K L E QMAGRAGRRG+D G V++V + A
Sbjct: 643 LNLPTRTVVFSGYRKHDGHSFRNLLPGEYTQMAGRAGRRGLDKVGSVIIVPPGGDDAPPV 702
Query: 599 CKL---LFAGVEPLVSQFTASYGMVLNLL 624
L + L SQF +Y M+LNLL
Sbjct: 703 TDLRNMILGEPSKLRSQFRLTYNMILNLL 731
>gi|412993030|emb|CCO16563.1| ATP-dependent RNA helicase DOB1 [Bathycoccus prasinos]
Length = 1124
Score = 292 bits (748), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 181/482 (37%), Positives = 260/482 (53%), Gaps = 38/482 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ S+ R SV+VSA TS+GKT++AE A + +R+ YT+PLK
Sbjct: 103 AKKYPFELDTFQEQSVLCLERQESVLVSAHTSAGKTVVAEYAIAMAKRDGQRVVYTSPLK 162
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE +E F D VGL+TGD+ IN A L+MTTE+LR+MLY+ G V+ E G
Sbjct: 163 ALSNQKYRELKEEFSD--VGLMTGDTVINPNASCLVMTTEVLRSMLYKG-GEVTREVGW- 218
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 331
++ DE+HY+ D RG VWEE I+ P V+ + LSAT+ NA E + W+ ++H
Sbjct: 219 ----VIYDEIHYMRDKERGVVWEESIVLLPDTVKYVFLSATIPNAREFSEWVCKVHDIPC 274
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y S + ++D+ N+L+ + + +
Sbjct: 275 HIVYTDFRPTPLEHYIYPSGGDGIFLIVDKTSAFKED----NFLKAISIANEKGAEVAQA 330
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R +RK ++MN + Q +L++N+ V + + R+ P I F F
Sbjct: 331 RTAARKASEMNGGDGT----QAKLAQNT----------DVFKIIKMIVDRNYDPVIVFAF 376
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVEL-------ALKRFRILYPDAVREPAIKGLLKGV 502
N+ C++ L +L DE E ++ AL P P + L +G+
Sbjct: 377 NKGECESFANALHKVDLCDENEKEMIDAIYWNAMDALSESDKKLPQVASMPNL--LRRGL 434
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH+G LPI K IE LFQ GL+KV+FATET++ G+NMPART V +S K +G +
Sbjct: 435 GVHHSGLLPILKEVIEILFQEGLIKVLFATETMSVGLNMPARTCVFASPRKFDGTGFRWI 494
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
TS E QM+GRAGRRG D+RG VVL+ A +L +PL S F SY +LN
Sbjct: 495 TSGEYTQMSGRAGRRGKDDRGLVVLMVDEKMDAPTAKDMLRGRSDPLDSAFHVSYATLLN 554
Query: 623 LL 624
L+
Sbjct: 555 LM 556
>gi|380302552|ref|ZP_09852245.1| superfamily II RNA helicase [Brachybacterium squillarum M-6-3]
Length = 954
Score = 292 bits (748), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 199/535 (37%), Positives = 284/535 (53%), Gaps = 46/535 (8%)
Query: 115 SDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRG 174
S+ P P+ R +W+ E G+E+ + + F +D FQ + G
Sbjct: 2 SNDEPGPAERYA-RWR------EEQAAAGSELT---RFTARFPFPLDDFQLEACRGLEAG 51
Query: 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLL 234
SV+V+APT +GKT++ E A +A+ R++FYT P+KALSNQK E E G VGLL
Sbjct: 52 RSVLVAAPTGAGKTVVGEFAVHLALASGRKVFYTAPIKALSNQKHGELVEWLGAEKVGLL 111
Query: 235 TGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVW 294
TGD+A+ EA++++MTTE+LRNMLY ++ + +V+DEVHYL+D RG VW
Sbjct: 112 TGDTAVRPEAEVVVMTTEVLRNMLYAGSPLLEG------LGFVVMDEVHYLADRLRGPVW 165
Query: 295 EEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALL 354
EE+I++ VQ++ LSATV+NA+E W+ ++ G TE++ S RPVPL + +L
Sbjct: 166 EEVILHLDDAVQLVSLSATVSNAEEFGAWLQEVRGDTEVVVSETRPVPLWQHVVVGGDML 225
Query: 355 PL-LDEKGKHM-------NRKLSLN-YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
L +DE G+ + K ++N ++ S P +D G R
Sbjct: 226 DLFVDEDGEPVVSHGPGARGKPAVNPEIERLASHTPPVEDRGGRGGRGGHGGRGGRGGRG 285
Query: 406 --TSFGQHQLSKNSINAIRRSQVPQVI---DTLWHLRSRDMLPAIWFIFNRRGCDAAVQY 460
+ G+H+ +N R +P+ + + L + +LPAI FIF+R GC+AAV+
Sbjct: 286 RGNTQGRHR-PRNPGRDGGRGGMPRPARRSEVIALLDAAALLPAIIFIFSRAGCEAAVRQ 344
Query: 461 LEDCNL--LDECEMSEVELAL-KRF--------RILYPDAVREPAIKGLLKGVAAHHAGC 509
+ L D+ E + L +R ++L +A R A L GVAAHHAG
Sbjct: 345 VTQSRLRLTDDEERRRIRAVLDERLAAIGVEDEQVLGIEAFRRAA----LDGVAAHHAGM 400
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ 569
LP+ K+ +EELF GL+KVVFATETLA GINMPAR+ VL L K LT E Q
Sbjct: 401 LPLLKTVVEELFAAGLIKVVFATETLALGINMPARSVVLEKLVKFNGVEHAALTPGEYTQ 460
Query: 570 MAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+ GRAGRRGID GH V++ L PL S F + M +NLL
Sbjct: 461 LTGRAGRRGIDTEGHAVVIAGQGFDPAAVGSLASRRTYPLRSAFRPTANMAVNLL 515
>gi|299756424|ref|XP_002912202.1| translation repressor [Coprinopsis cinerea okayama7#130]
gi|298411671|gb|EFI28708.1| translation repressor [Coprinopsis cinerea okayama7#130]
Length = 1248
Score = 292 bits (748), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 207/617 (33%), Positives = 299/617 (48%), Gaps = 78/617 (12%)
Query: 61 FPTEHKLTDADEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPA 120
P E D DE +D D + D+ D+V + + D VSS A
Sbjct: 176 LPGEDIPDDLLNLEDEESTIPEDQDQDRGVDDVDEVEDATFSQTNEIDSLLPVSS----A 231
Query: 121 PSWREEFKWQRVE--KLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVV 178
P ++ Q+ + + N F N V ++A Y F +D FQ+ ++ +G+SV
Sbjct: 232 PRRAKKALAQKRDWAHIINVNTPFNNFHELVPDMAHKYPFELDTFQKHAVYHLEKGNSVF 291
Query: 179 VSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDS 238
V+A TS+GKT++AE A + + R YT+P+KALSNQKFR+F++TF VG+LTGD
Sbjct: 292 VAAHTSAGKTVVAEYAIALSEKHMTRAIYTSPIKALSNQKFRDFKQTFSAATVGILTGDV 351
Query: 239 AINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI---------- 288
IN EA LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++D
Sbjct: 352 QINPEASCLIMTTEILRSMLYKGADLIR------DVEFVIFDEVHYVNDAEVRYYVHFRS 405
Query: 289 -------SRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRP 340
RG VWEE+II P+ V II LSATV NA E A W+G+ K +I++ +RP
Sbjct: 406 ELILTKPQRGVVWEEVIIMLPEHVNIILLSATVPNAKEFADWVGRTKKKDIYVISTPQRP 465
Query: 341 VPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG-SRRRNSRKHADM 399
VPL Y + ++D K N+L + YKD G S +R K
Sbjct: 466 VPLEHYLYAGRDMFKIVDAKR---------NFLS------QGYKDAGESLKRKQDKERQA 510
Query: 400 NSNNIVTSFGQHQLSKNS---------INAIRRSQVPQVIDT----------LWHLRSRD 440
V G + N+ S P+++ T + HL+ +
Sbjct: 511 AGLPPVQRVGAKAATSNAQRGRGGPPRGRGGSVSSAPRMMHTGADKNLYVHLVGHLKKKQ 570
Query: 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAI---K 496
+LP + F +++ C+ L + +L E SEV +A+ K L + P I +
Sbjct: 571 LLPVVVFTLSKKRCEENASTLTNQDLCTGVEKSEVHVAIEKALSRLKGSDKKLPQITRMR 630
Query: 497 GLL-KGVAAHHAGCLPIWKSF-------IEELFQRGLVKVVFATETLAAGINMPARTAVL 548
LL +G+ HH I + F +E LF RGLVK++FATET A G+NMPA+ V
Sbjct: 631 DLLSRGIGIHHVFPRSIHRRFLKAILKLVEILFARGLVKILFATETFAMGVNMPAKCVVF 690
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE- 607
SS+ K + E QMAGRAGRRG+D G V++V + + + G
Sbjct: 691 SSMRKHDGKSFRDILPGEYTQMAGRAGRRGLDPTGTVIIVCGDNLPEQTALQTMIIGTPG 750
Query: 608 PLVSQFTASYGMVLNLL 624
L SQF +Y M+LNLL
Sbjct: 751 KLSSQFRLTYNMILNLL 767
>gi|448107036|ref|XP_004200892.1| Piso0_003502 [Millerozyma farinosa CBS 7064]
gi|448110044|ref|XP_004201523.1| Piso0_003502 [Millerozyma farinosa CBS 7064]
gi|359382314|emb|CCE81151.1| Piso0_003502 [Millerozyma farinosa CBS 7064]
gi|359383079|emb|CCE80386.1| Piso0_003502 [Millerozyma farinosa CBS 7064]
Length = 1070
Score = 292 bits (747), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 187/541 (34%), Positives = 281/541 (51%), Gaps = 41/541 (7%)
Query: 93 YDDVSGEVSDEIQQSDDEFEVSSDSSPAP-SWREEFKWQRVEKLCNEVKEFGNEMIDVDE 151
+D V E S E+ S S++ PA R + + Q + K G + +
Sbjct: 84 FDAVEIEASREVAASSGLLGQSTEEKPAQLQLRHQVRHQVAVPPGFDYKPIGEHVRKSE- 142
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A Y F +D FQ +SI RG SV+VSA TS+GKT++AE A ++ +++R+ YT+P+
Sbjct: 143 -ARTYPFTLDPFQDTSISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLRDKQRVIYTSPI 201
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+RE + F D VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 202 KALSNQKYRELQAEFVD--VGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEVMR----- 254
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK- 330
+V ++ DEVHY+ D SRG VWEE II P +V + LSAT+ NA E A WI +IH +
Sbjct: 255 -EVAWVIFDEVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKIHKQP 313
Query: 331 TELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ + RP PL Y + + ++DEKG +S + S
Sbjct: 314 CHVVYTDFRPTPLQHYLFPAAGDGIHLVVDEKGTFREENFQKAMASISDNMGDDPSSADS 373
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
R + + N + +S + +++ ++ R P I F
Sbjct: 374 RGKKGQTFKGGNKDG-------------------KSDIYKIVKMIYMKRYN---PVIVFS 411
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVA 503
F++R C+A + + ++ E + L PDA +E P IK +L +G+
Sbjct: 412 FSKRDCEALALKMSKLDFNNDDEREALTKVFNNAINLLPDADKELPQIKNILPLLRRGIG 471
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K G ++
Sbjct: 472 IHHSGLLPILKEIIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKGFRWVS 531
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL
Sbjct: 532 GGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNL 591
Query: 624 L 624
+
Sbjct: 592 M 592
Score = 44.7 bits (104), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 6/152 (3%)
Query: 995 RALDINTQ--VIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIK 1052
R L TQ +I G A I +EL L ++ N DL P Q AA+C+ V +
Sbjct: 887 RRLGFTTQEDIIELKGRVACEISTGDELLLTELIFNGTFSDLTPEQCAALCSCFVFQERA 946
Query: 1053 VRLWKNNSSIYEPSTTVINVINVLDE-HRSSFLELQEKHGVEIPCCLDSQFSGMVEAWAS 1111
+ K + EP ++ ++ + + R +E+ EK VE + + AW+
Sbjct: 947 KEVPKLKPELAEPLKSMQDMATRIAKISRECKIEMVEKEYVE---SFRPELMEVTYAWSK 1003
Query: 1112 GLTWREMMMDCALDDGDLARLLRRTIDLLAQI 1143
G ++ ++ + +G L R+ +R ++L Q+
Sbjct: 1004 GASFTQICKMTDVYEGSLIRMFKRLEEMLRQM 1035
>gi|342184386|emb|CCC93868.1| putative ATP-dependent DEAD/H RNA helicase [Trypanosoma congolense
IL3000]
Length = 951
Score = 292 bits (747), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 184/481 (38%), Positives = 257/481 (53%), Gaps = 36/481 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + + +D FQ+ SIEA G SV+VSA TS+GKT +A A + ++R+ YT+P+K
Sbjct: 24 AMTFPYELDTFQKDSIEALENGDSVLVSAHTSAGKTTVALYAIAKALQEKKRVIYTSPIK 83
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFREF E F +VGL+TGD I ++ L+MTTEILR+MLY+ M L
Sbjct: 84 ALSNQKFREFTEKF--ESVGLMTGDITIKVDSDCLVMTTEILRSMLYRGTEM------LR 135
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH--GK 330
+V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH K
Sbjct: 136 EVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFADWVESIHPGTK 195
Query: 331 TELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
+I + RPVPL Y A + ++DE GK + + +GG
Sbjct: 196 VHVIHTDYRPVPLHHYVYPCGADGIFLIVDEHGKFREDNFKRAMASVGAANGGSEANGGE 255
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
R++ L + A+R+S P +++ + + +R+M P I F
Sbjct: 256 SGRSA------------------PLVRGKQKAMRKSTEP-IMEIIKLVMNRNMYPIIVFS 296
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVA 503
F + C+ L N + E + V+ + L + + PAI+ LL +GV
Sbjct: 297 FAKAECERNALALSKLNFNNTEEDTLVKDVFNNAMQCLAVEDRKLPAIEHLLPLLRRGVG 356
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K LT
Sbjct: 357 IHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRYLT 416
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E QM+GRAGRRG+D G V+ + E ++ G + L S F +Y MVLNL
Sbjct: 417 GGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPEILKQVTGGGADVLNSSFHLTYNMVLNL 476
Query: 624 L 624
L
Sbjct: 477 L 477
>gi|222622217|gb|EEE56349.1| hypothetical protein OsJ_05464 [Oryza sativa Japonica Group]
Length = 1452
Score = 291 bits (746), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 188/499 (37%), Positives = 269/499 (53%), Gaps = 34/499 (6%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V ++A Y F +DKFQ+ +I +G SV V+A TS+GKT++AE A + R YT
Sbjct: 453 VPDMAIEYPFELDKFQKEAIYYLQKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 512
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
P+K +SNQK+R+F F +VGLLTGD +I EA LIMTTEILR+MLY+ ++
Sbjct: 513 APIKTISNQKYRDFCGKF---DVGLLTGDVSIRPEATCLIMTTEILRSMLYRGADIIR-- 567
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE+II PK + I+ LSATV N E A WIG+
Sbjct: 568 ----DIEWVIFDEVHYVNDAERGVVWEEVIIMLPKHINIVLLSATVPNTVEFADWIGRTK 623
Query: 329 GKTELITSS-RRPVPL---------TWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTS 378
K +TS+ +RPVPL + K A L + K + +K + + L +
Sbjct: 624 QKKIHVTSTNKRPVPLEHCLFYSGEVFKICEKDAFLTQGYREAKEVFKKKNSSKLGMKPG 683
Query: 379 EVKPYKDG---GSRRRN---SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 432
KP G++ RN S + D + + + S + RRS+ +
Sbjct: 684 S-KPGTTAVRAGTQGRNPDTSSRGRDQKNPKHHHASSSAAAVQQSTSGPRRSESSFWMPL 742
Query: 433 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVR 491
+ +L + ++P + F F++ CD + + + +L E SE+ L K F L
Sbjct: 743 INNLLKKSLVPVVIFCFSKNRCDRSAESMFGADLTSNSEKSEIRLFCDKAFSRLKGSDRN 802
Query: 492 EPAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
P + G L +G+ HHAG LPI K +E LF RG++KV+F+TET A G+N PART V
Sbjct: 803 LPQVVGIQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVV 862
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
SL K +L E QMAGRAGRRG+DN G V+++ E K L G +
Sbjct: 863 FDSLRKFDGKEHRKLLPGEYIQMAGRAGRRGLDNIGTVIVMCRDEIPEESDLKNLIVG-K 921
Query: 608 P--LVSQFTASYGMVLNLL 624
P L SQF +Y M+L+LL
Sbjct: 922 PTRLESQFRLTYTMILHLL 940
>gi|429961689|gb|ELA41234.1| hypothetical protein VICG_01723 [Vittaforma corneae ATCC 50505]
Length = 900
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 195/538 (36%), Positives = 278/538 (51%), Gaps = 83/538 (15%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ+ SI + R SV+VSA TS GKT++AE A ++ N +R+ YT+P+K
Sbjct: 62 AKKYKFELDTFQKISICSIERDESVLVSAHTSCGKTVVAEYAIAQSIKNNQRVVYTSPIK 121
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE +E FGD VGL+TGD IN EA L+MTTEILRNMLY+ ++
Sbjct: 122 ALSNQKYRELQEEFGD--VGLMTGDVTINPEASCLVMTTEILRNMLYRGSEVIR------ 173
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V I+ DEVHY+ D RG VWEE II P V+++ LSAT+ NA E A WI I +
Sbjct: 174 EVHWIIFDEVHYMRDRERGVVWEETIILLPGHVRMVFLSATIPNALEFAEWISYIQQQIV 233
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
++ + +R +PL YF T L L+ +K H+ K +
Sbjct: 234 HVVYTEKRVIPLIHYFQTDD--LYLIKDKKFHL-------------------KQFMRSMQ 272
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
N K DM+ K AI R+ P V+ F F+R
Sbjct: 273 NVPKRKDMD--------------KILQEAIERANTPAVV----------------FSFSR 302
Query: 452 RGCDA-AVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE--------PAIKGLL--- 499
+ C+ AV+ +D LLDE E V + ++ +A+ P I+ +L
Sbjct: 303 KECEGYAVKIRKD--LLDEEEKDLV-------KTIFDNAIASLRQEDRNIPIIEKMLPLL 353
Query: 500 -KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+ HH+G LPI + +E LFQ L+KV+FATET + G+NMPA+T + +SL K +
Sbjct: 354 QRGIGIHHSGLLPIIREIVEILFQESLLKVLFATETFSIGLNMPAKTVIFTSLRKFDGTN 413
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
R LTS E QM+GRAGRRG+D G + + T + + + + L S F +Y
Sbjct: 414 RRLLTSGEFIQMSGRAGRRGLDEMGAAICILTEELTVAQVKTIFSSSADKLFSAFRLTYN 473
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRS-LEEARKLVEQSFGNYVGSNVMLAAKDEL 675
M+LNLL + S QA +S LE+ K+V+ F + +L ++EL
Sbjct: 474 MILNLLRVEGLDPTYVLSRSFFHFQAYKSALEQENKIVDVPFAEETELSQLLLRREEL 531
>gi|391335944|ref|XP_003742345.1| PREDICTED: superkiller viralicidic activity 2-like 2-like
[Metaseiulus occidentalis]
Length = 1020
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 204/577 (35%), Positives = 288/577 (49%), Gaps = 64/577 (11%)
Query: 73 AADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVS-------SDSSPAPSWRE 125
A E +D +D + ++ DD+ + +SD+ EVS + +P +
Sbjct: 12 GAAEKSEDGNDAPSKSSSKTTDDIVNAILQGKHKSDETEEVSRKRIKILQEYNP-DDYAT 70
Query: 126 EFKWQRVEKL--C-NEV-----KEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSV 177
RVE + C +EV +EF + V A Y F +D FQ+ +I SV
Sbjct: 71 RCTIHRVETVDSCSHEVAVPSGQEFTPLEVKVGAPAREYQFVLDPFQKEAILCIENEQSV 130
Query: 178 VVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGD 237
+VSA TS+GKT++AE A + N++R+ YTTP+KALSNQK+REF E F D VGL+TGD
Sbjct: 131 LVSAHTSAGKTVVAEYAIALALKNKQRVIYTTPIKALSNQKYREFYEEFKD--VGLMTGD 188
Query: 238 SAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEI 297
IN A LIMTTEILR+MLY+ ++ +V ++ DE+HY+ D RG VWEE
Sbjct: 189 VTINPTASCLIMTTEILRSMLYRGSEIMR------EVGWVIFDEIHYMRDKERGVVWEET 242
Query: 298 IIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF--STKTALL 354
II P V + LSAT+ NA + A WI +H + ++ + RPVPL Y + L
Sbjct: 243 IILLPDNVHYVFLSATIPNARQFAEWICYLHKQPCHVVYTEYRPVPLQHYIFPAGGDGLH 302
Query: 355 PLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQ 412
++DEKG K N L + LQ + K D G R + +D N IV
Sbjct: 303 LVVDEKGVFKEDNFNLVMTTLQSAAGNAK--GDAGLRGKKGGFRSDTNCYKIVK------ 354
Query: 413 LSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEM 472
+ RD P I F F++R C+A + +L E
Sbjct: 355 ----------------------MIMERDYSPVIIFSFSKRECEAYATQMSKLDLNSAEEK 392
Query: 473 SEVELALKRFRILYPDAVRE-PAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVK 527
V D RE P ++ L++G+A HH G LPI K IE LF GL+K
Sbjct: 393 KLVNEVFNNAMEALSDEDRELPQVQNVLPLLMRGIAIHHGGLLPILKETIEILFSEGLIK 452
Query: 528 VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL 587
+FATET A G+NMPART + ++ K +TS E QM+GRAGRRG+D+RG V+L
Sbjct: 453 ALFATETFAMGLNMPARTVLFTNARKYDGQSFRWVTSGEYIQMSGRAGRRGLDDRGIVIL 512
Query: 588 VQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+ ++ ++ + + S F +Y MVLNLL
Sbjct: 513 MIDEKMSSQSAKDIVKGAPDAINSAFHLTYNMVLNLL 549
>gi|154415228|ref|XP_001580639.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121914859|gb|EAY19653.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 1069
Score = 291 bits (745), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 191/547 (34%), Positives = 284/547 (51%), Gaps = 54/547 (9%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
+V + A ++F+ D FQ S+ + V VSAPTS+GKT++A+ A ++ R Y
Sbjct: 195 EVPKPAYEFNFKCDNFQVRSMYRLEKNQMVFVSAPTSAGKTVVAQYAIALARQHKMRAIY 254
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
T+P+KALSNQK+R+ + F D VG+LTGD ++NR+A +LIMTTEILR+MLY+ +
Sbjct: 255 TSPIKALSNQKYRDLNKVFHD--VGILTGDVSLNRDASVLIMTTEILRSMLYRGADL--- 309
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
L DVDV++ DE HY+SD RG VWEE II P + ++ LSAT+ N E+A WIG+
Sbjct: 310 ---LRDVDVVIFDECHYISDEERGVVWEESIILMPPHINMVFLSATIPNDTEIAAWIGRT 366
Query: 328 HGKTELIT-SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
+T + + RPVPL L +L + GK + S + +L + K G
Sbjct: 367 KNRTVYVERHTERPVPLVHCLYAAND-LAVLKQPGKTFD---SQKFKRLENKFKEKQKKG 422
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
R + Q + K +NA D+LP +
Sbjct: 423 PKREL------------FTPQYWQKAIDK-FVNA-------------------DLLPVLM 450
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAIKG----LLKG 501
F F+++ C+ ++ + L+D+ + + VE + L P+ P I+ L+ G
Sbjct: 451 FSFSQKNCEKFAEFAKQKCLIDDKQKAHVERFFTQSISRLKPNDRCLPQIEQVRSLLVNG 510
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+ HH G LPI K +E L G VKV+F T T A GIN+PAR+ +SL K +
Sbjct: 511 IGLHHGGMLPILKECVEILLADGYVKVLFCTSTFAMGINVPARSCAFTSLEKFNGQEFVN 570
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG-VEPLVSQFTASYGMV 620
LT E QM+GRAGRRG+D++GH +L+ T E + +F G VE L SQF + M+
Sbjct: 571 LTPTEYVQMSGRAGRRGLDSQGHAILMVTKEFPEEAFIQKMFDGKVEKLNSQFYIRFNMI 630
Query: 621 LNLL--AGAKVMHLSNESDDMKALQAG-RSLEEARKLVEQSFGNYVGSNVMLAAKDELCK 677
LNL+ G ++ L S +Q+ +EA VE+ NY ++ L AK E
Sbjct: 631 LNLIRTQGMEMTDLMKRSLSSNTVQSAIPKKKEALAKVEEEIKNYKRADCALNAKLEPNF 690
Query: 678 IQKETDV 684
++ TD+
Sbjct: 691 LEFNTDI 697
>gi|367034876|ref|XP_003666720.1| hypothetical protein MYCTH_2311660 [Myceliophthora thermophila ATCC
42464]
gi|347013993|gb|AEO61475.1| hypothetical protein MYCTH_2311660 [Myceliophthora thermophila ATCC
42464]
Length = 1081
Score = 291 bits (745), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 203/575 (35%), Positives = 300/575 (52%), Gaps = 67/575 (11%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A Y F++D FQ S+ + R SV+VSA TS+GKT++AE A + +R+ YT+P
Sbjct: 139 EPARTYPFKLDPFQALSVASIEREESVLVSAHTSAGKTVVAEYAIAQCLKKNQRVIYTSP 198
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+R+F+ FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 199 IKALSNQKYRDFQAEFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR---- 252
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V ++ DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH +
Sbjct: 253 --EVAWVIFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHRQ 310
Query: 331 T-ELITSSRRPVPLTWYF---STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
++ + RP PL YF TK L ++DEKG + + + + D
Sbjct: 311 ACHVVYTDFRPTPLQNYFFPAGTKGIYL-IVDEKGNFKEHNFNEAMAAIESKKGSDPADW 369
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
++++ K+ N K +S + +VI + R P I
Sbjct: 370 SAKQKGRGKNKKTN--------------KGGEAPDEKSDIERVIKMII---KRSFQPVIV 412
Query: 447 FIFNRRGCDAAVQYLEDC--NLLDECEMSE--VELALKRFRILYPDAVRE-PAIKGLL-- 499
F F +R C+ + N DE +M E E AL++ D R P I +L
Sbjct: 413 FNFAKRECEQLALKTSNMKFNAPDEEQMVEKVFENALQQLS----DEDRSLPQISNILPL 468
Query: 500 --KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
KG+ HH+G LPI K IE LFQ GL+KV+FATET + G+NMPART V + ++K
Sbjct: 469 LRKGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFTQVTKWDGV 528
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
R LTS+E QMAGRAGRRG+D+RG V+++ + ++ + L S F Y
Sbjct: 529 QRRPLTSSEYIQMAGRAGRRGLDDRGIVIMMVDDKLEPDVARSVVVGQQDRLNSAFHLGY 588
Query: 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCK 677
M+LNLL ++ +S E ++E+ F + ++ + + EL
Sbjct: 589 NMILNLL---RIEAISPEF-----------------MLERCFFQFQTASSVPQLERELAN 628
Query: 678 IQKETDVLTSEISDDAI--DRKSRRLLSEAAYKEM 710
+Q+E D + I D+A D +S R E K+M
Sbjct: 629 LQQERDSMI--IPDEAAIKDYRSIRQQLEGYQKDM 661
>gi|387016320|gb|AFJ50279.1| Helicase SKI2W-like [Crotalus adamanteus]
Length = 1274
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 183/489 (37%), Positives = 260/489 (53%), Gaps = 59/489 (12%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F D FQ+ +I + SV V+A TS+GKT++AE A + + R YT+P+KALS
Sbjct: 329 WPFEPDVFQKQAILHLEKHDSVFVAAHTSAGKTVVAEYAIALSQKHMTRTIYTSPIKALS 388
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQKFR+F+ TFGD VGLLTGD ++ +A LIMTTEILR+MLY + L D++
Sbjct: 389 NQKFRDFKNTFGD--VGLLTGDVQLHPDASCLIMTTEILRSMLYNGSDV------LRDLE 440
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKTELI 334
++ DEVHY++D RG VWEE++I P V II LSATV N E A WIG+I K +I
Sbjct: 441 WVIFDEVHYINDSERGVVWEEVLIMLPDHVNIILLSATVPNTLEFADWIGRIKRKKIYVI 500
Query: 335 TSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ +RPVPL Y T+ L L+D +G + + Y +
Sbjct: 501 STLKRPVPLEHYLYTGNSQKTQKELFLLVDARGTFLTKGY--------------YDAVEA 546
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----HLRSRDMLP 443
++ S KH+ +FG Q + P +W LR +D LP
Sbjct: 547 KKERSSKHSQ--------TFGAKQ-------PMHAGAGPGQDKNIWLSLIDMLRKKDQLP 591
Query: 444 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL--- 499
+ F F+R CD L +L E SE+ + ++ R+ P + ++
Sbjct: 592 VVAFTFSRNRCDENASMLTTVDLTTTTEKSEIHVFFQKCISRLKGTDRQLPQVLHMVDLL 651
Query: 500 -KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+ HH+G LPI K +E LF +GLVK++FATET A G+NMPART V +S+ K +
Sbjct: 652 KRGIGVHHSGILPILKEVVEMLFSKGLVKILFATETFAMGVNMPARTVVFNSVRKHDGAN 711
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFTA 615
L E QMAGRAGRRG+D G V+++ Q P + +++ L SQF
Sbjct: 712 FRDLVPAEYIQMAGRAGRRGLDTTGMVIILCKNQVPE--MSDLHRMMLGKPTRLQSQFRL 769
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 770 TYTMILNLL 778
>gi|380024872|ref|XP_003696213.1| PREDICTED: LOW QUALITY PROTEIN: helicase SKI2W-like [Apis florea]
Length = 1225
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 201/558 (36%), Positives = 296/558 (53%), Gaps = 61/558 (10%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ ELA + + +D FQ+ +I G +V V+A TS+GKT +AE A + + ++ YT
Sbjct: 276 IPELAMSFPYELDIFQKQAILKLEEGCNVFVAAHTSAGKTTVAEYAIALSQKHMTKVIYT 335
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQK+RE + F +VGLLTGD IN A LI+TTEIL++MLY +
Sbjct: 336 SPIKALSNQKYRELKRKF--ESVGLLTGDLQINPNASCLIITTEILQSMLY------CAS 387
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI- 327
L D++ ++ DEVHY+++ RG VWEE +I P+ V I+ LSATV N A W+G+
Sbjct: 388 EVLRDLEFVIFDEVHYINNDERGHVWEESVILLPQTVTIVMLSATVPNPLVFADWVGRXK 447
Query: 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG- 386
KT +I++ +RPVPL Y T T GK + K +L L S + DG
Sbjct: 448 KKKTYVISTLKRPVPLQHYLYTGT--------DGKTKDDK----FLVLGESG-QFLLDGW 494
Query: 387 --GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----HLRSR 439
++ NS+ + N + V HQ P+ LW HL+++
Sbjct: 495 YKATKFXNSKNQVNKNIKD-VKKLSMHQ-----------QMTPKQEQVLWSAFISHLKTQ 542
Query: 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK-RFRILYPDAVREPAI--- 495
+MLP + F+ +R+ CD + L + +L E E +EL + R L + P +
Sbjct: 543 NMLPVVVFMLSRKRCDMSAVLLRNVDLTTETEKHTIELFFQNNIRHLKGTDRQLPQVLMM 602
Query: 496 -KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554
+ L G+ HH+G LPI K +E LFQ G+VK++FATET A G+NMPART V S+ K
Sbjct: 603 QELLESGIGIHHSGILPILKEIVEMLFQTGVVKLLFATETFAMGVNMPARTVVFDSIKKY 662
Query: 555 TASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQF 613
+ L +E QMAGRAGRRG D G V V+ +T E ++ + L S+F
Sbjct: 663 DGNNFRILYPSEYVQMAGRAGRRGHDTTGMVIVMCRTSVPHFNELKNMMCGQAQNLESKF 722
Query: 614 TASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKD 673
+Y MVLNL NES ++A+ RS +E+ ++ Q+ NY + ++
Sbjct: 723 KVTYSMVLNL-------RRLNESVTVEAMMR-RSFKESPVVINQN--NYKMQ--LQEVEN 770
Query: 674 ELCKIQKETDVLTSEISD 691
EL K+ TD L ++SD
Sbjct: 771 ELSKLPPLTD-LQKKLSD 787
>gi|351713165|gb|EHB16084.1| Helicase SKI2W [Heterocephalus glaber]
Length = 1238
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 190/497 (38%), Positives = 256/497 (51%), Gaps = 61/497 (12%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F D FQ+ +I + SV V+A TS+GKT++AE A + R YT+P+KALS
Sbjct: 319 WAFEPDVFQKQAILHLEKHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS 378
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQKFR+FR TFGD VGLLTGD ++ EA LIMTTEILR+MLY ++ D++
Sbjct: 379 NQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLE 430
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG------ 329
++ DEVHY++D RG VWEE+ I P V +I LSATV NA E A WIG
Sbjct: 431 WVIFDEVHYINDAERGVVWEEVFIMLPDHVSVILLSATVPNALEFADWIGCCRSSGPCLW 490
Query: 330 ----------KTELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYL 373
+ +I++ RPVPL + T+ L LLD +G +
Sbjct: 491 TSPPRRLKRRQIYVISTLTRPVPLEHHLFTGNSPKTQGELFLLLDSRGAFHTKGY----- 545
Query: 374 QLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTL 433
Y +++ KHA +FG Q + + A R + L
Sbjct: 546 ---------YAAVEAKKERMSKHAQ--------TFGAKQPGRQAGPAQDRGVY---LSLL 585
Query: 434 WHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE- 492
LR+R LP + F F+R CD L +L E SE+ L L+R + R+
Sbjct: 586 ASLRARAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQL 645
Query: 493 PAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
P + + L +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V
Sbjct: 646 PQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVF 705
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVE 607
S+ K S L E QMAGRAGRRG+D G VVL+ + + +++
Sbjct: 706 DSMRKHDGSAFRDLLPGEYVQMAGRAGRRGLDPTGTVVLLCKARVPEMADLHRMMMGKPS 765
Query: 608 PLVSQFTASYGMVLNLL 624
L SQF +Y M+LNLL
Sbjct: 766 QLQSQFRLTYTMILNLL 782
>gi|269218493|ref|ZP_06162347.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Actinomyces sp.
oral taxon 848 str. F0332]
gi|269211604|gb|EEZ77944.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Actinomyces sp.
oral taxon 848 str. F0332]
Length = 866
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 191/493 (38%), Positives = 264/493 (53%), Gaps = 59/493 (11%)
Query: 144 NEMID-VDELASIYDFR---IDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATV 199
N+ +D VD Y R +D FQ + +A R V+V APT SGKT++A A +
Sbjct: 2 NDALDHVDHFVEEYAARGIALDSFQIDACKAVARNRDVLVCAPTGSGKTVVAHFAVELAL 61
Query: 200 ANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLY 259
A ++R YT P+KALSNQK+ E E G+ VGLLTGD ++NR+A+IL++TTE+LRNML+
Sbjct: 62 AKEKRCVYTAPIKALSNQKYSELAELHGEEYVGLLTGDVSVNRDAEILVVTTEVLRNMLF 121
Query: 260 QSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADE 319
+ + DV +VLDEVHYL+D RG VWEE+I+ P+ ++I LSATV N E
Sbjct: 122 ------AGSPDIDDVGYVVLDEVHYLADRERGPVWEEVILTLPEHCRLIGLSATVPNTGE 175
Query: 320 LAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE 379
LAGW+ + GKTEL+ S+ RP +PL E + RK+ +
Sbjct: 176 LAGWLRSVRGKTELVHSTVRP-------------VPLRQEVA--VGRKVFRLF------- 213
Query: 380 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 439
KDGG +V++ ++K + R + L R
Sbjct: 214 ---GKDGGP------------LGALVSA-----IAKLPPDGRGRISDRDRRRIIDLLAER 253
Query: 440 DMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVR-----E 492
DMLPAI FIF+R+GCD AV+ L D L E +E + R ++ R +
Sbjct: 254 DMLPAIEFIFSRKGCDKAVEALLQRDIALTGRKERAEAAARIAEVRATLSESDRRAVGFD 313
Query: 493 PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552
A + L++G AHHAG P K E+L + GL+++V+AT TLA GI+MP RT V+ SL
Sbjct: 314 AAARALVRGYGAHHAGVYPAIKELTEKLMEDGLLRIVYATGTLALGIDMPVRTVVVESLQ 373
Query: 553 KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ 612
+ G I L++ E Q+ GRAGRRG D GH V++ P L VE L+S
Sbjct: 374 RWDGEGFIDLSATEYTQLIGRAGRRGKDAVGHAVVLAGPDLDPYILADLGSGRVEALLSA 433
Query: 613 FTASYGMVLNLLA 625
F SY V+NLLA
Sbjct: 434 FVPSYNTVVNLLA 446
>gi|367054316|ref|XP_003657536.1| hypothetical protein THITE_2123361 [Thielavia terrestris NRRL 8126]
gi|347004802|gb|AEO71200.1| hypothetical protein THITE_2123361 [Thielavia terrestris NRRL 8126]
Length = 1090
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 179/483 (37%), Positives = 265/483 (54%), Gaps = 35/483 (7%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A +Y FR+D FQ S+ + R SV+VSA TS+GKT++AE A + +R+ YT+P
Sbjct: 154 EPARVYPFRLDPFQALSVASIERDESVLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTSP 213
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+R+F+ FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 214 IKALSNQKYRDFQADFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR---- 267
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V ++ DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH +
Sbjct: 268 --EVAWVIFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHRQ 325
Query: 331 T-ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL YF + + ++DEKG + ++ + + D
Sbjct: 326 ACHVVYTDFRPTPLQNYFFPAGSNGIYLIVDEKGNFKENNFNEAMAKIESKKGSDPADWS 385
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
++++ K+ N G+ ++ I + + +I +H P I F
Sbjct: 386 AKQKGRGKNKKTNKG------GEAPAEQSDIAKV----IKMIIRKKFH-------PVIVF 428
Query: 448 IFNRRGCD--AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KG 501
F++ C+ A + N DE M V++ L D P I +L KG
Sbjct: 429 NFSKHECEQMALNTSVMKFNAPDEEAMV-VQVFENAINQLSEDDKNLPQISNILPLLRKG 487
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+ HH+G LPI K IE LFQ GL+KV+FATET + G+NMPART V + ++K R
Sbjct: 488 IGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFTQVTKWDGVQRRP 547
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
LTS+E QMAGRAGRRG+D+RG V+++ + ++ + L S F Y M+L
Sbjct: 548 LTSSEYIQMAGRAGRRGLDDRGIVIMMVDDKLEPDVARSVVVGHQDRLNSAFHLGYNMIL 607
Query: 622 NLL 624
NLL
Sbjct: 608 NLL 610
>gi|327266504|ref|XP_003218045.1| PREDICTED: helicase SKI2W-like [Anolis carolinensis]
Length = 1273
Score = 290 bits (743), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 182/489 (37%), Positives = 259/489 (52%), Gaps = 59/489 (12%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F D FQ+ +I + SV V+A TS+GKT++AE A + + R YT+P+KALS
Sbjct: 328 WPFEPDVFQKQAILHLEKHDSVFVAAHTSAGKTVVAEYAIALSQKHMTRTVYTSPIKALS 387
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQKFR+F+ TFGD VGLLTGD ++ +A LIMTTEILR+MLY + L D++
Sbjct: 388 NQKFRDFKNTFGD--VGLLTGDVQLHPDASCLIMTTEILRSMLYNGSDV------LRDLE 439
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKTELI 334
++ DEVHY++D RG VWEE++I P V II LSATV N E A WIG+I K +I
Sbjct: 440 WVIFDEVHYINDSERGVVWEEVLIMLPDHVNIILLSATVPNTLEFADWIGRIKRKKIYVI 499
Query: 335 TSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ +RPVPL Y T+ L L+D +G + + Y +
Sbjct: 500 STLKRPVPLEHYLYTGNSQKTQNELFLLVDARGTFLTKGY--------------YDAVEA 545
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----HLRSRDMLP 443
++ + KH+ +FG Q + P +W LR +D LP
Sbjct: 546 KKERASKHSQ--------TFGAKQ-------PMHAGAGPGQDKNIWLSLIDMLRKKDQLP 590
Query: 444 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL--- 499
+ F F+R CD L +L E SE+ + ++ R+ P + ++
Sbjct: 591 VVAFTFSRNRCDENASMLTTVDLTTTTEKSEIHVFFQKCISRLKGTDRQLPQVLHMVDLL 650
Query: 500 -KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+ HH+G LPI K +E LF +GLVK++FATET A G+NMPART V S+ K +
Sbjct: 651 KRGIGVHHSGILPILKEVVEMLFSKGLVKILFATETFAMGVNMPARTVVFDSIRKHDGTN 710
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFTA 615
L E QMAGRAGRRG+D G V+++ Q P + +++ L SQF
Sbjct: 711 FRDLVPAEYIQMAGRAGRRGLDTTGMVIILCKNQVPEMA--DLHRMMLGKPTQLQSQFRL 768
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 769 TYTMILNLL 777
>gi|238883476|gb|EEQ47114.1| ATP-dependent RNA helicase DOB1 [Candida albicans WO-1]
Length = 1062
Score = 290 bits (743), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 177/480 (36%), Positives = 260/480 (54%), Gaps = 35/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I R SV+VSA TS+GKT++AE A ++ +++R+ YT+P+K
Sbjct: 134 ARTYPFTLDPFQDTAISCIDRNESVLVSAHTSAGKTVVAEYAIAQSLRDKQRVIYTSPIK 193
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFRE + FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 194 ALSNQKFRELQAIFGD--VGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEVMR------ 245
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V +V DEVHY+ D SRG VWEE II P +V + LSAT+ NA E A WI +IH +
Sbjct: 246 EVAWVVFDEVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKIHNQPC 305
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y + + ++DEKG +S + S
Sbjct: 306 HVVYTDFRPTPLQHYLFPAGGDGIHLVVDEKGTFREENFQKAMATISDNSGDDPASSDSG 365
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R N + + N HQ K I I + + +++ + P I F F
Sbjct: 366 RGNKKGKTNKGRN--------HQDGKGDIYKIVK---------MIYMKKYN--PVIVFSF 406
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C++ + + + E + + L P+A RE P IK +L +G+
Sbjct: 407 SKRDCESLALKMSKLDFNTDEERNSLTQIFYNAIELLPEADRELPQIKNILPLLKRGIGI 466
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K G ++
Sbjct: 467 HHSGLLPILKEIIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGVGFRWVSG 526
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 527 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 586
Score = 41.6 bits (96), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 1067
G AA + +EL + +L + +L P Q+ + ++ + + L K + EP+
Sbjct: 894 GRVAAELSTGDELMITELLFSGFFNELTPQQICGLLSAFIFQERAKELPKLKPELAEPAK 953
Query: 1068 TVINVINVLDE-HRSSFLELQEKHGVEIPCCLDSQFS-GMVEA---WASGLTWREMMMDC 1122
+ N + + + S LE+ EK +E QF+ +VE W++G ++ +
Sbjct: 954 VIHETANKIAKISKQSGLEIVEKDYIE-------QFNLALVEVVFVWSNGASFSSICKMT 1006
Query: 1123 ALDDGDLARLLRRTIDLLAQI 1143
+ +G + R LRR I+L+ Q+
Sbjct: 1007 DIYEGSIIRALRREIELIKQL 1027
>gi|401420326|ref|XP_003874652.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490888|emb|CBZ26152.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 954
Score = 290 bits (743), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 182/481 (37%), Positives = 254/481 (52%), Gaps = 30/481 (6%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + + +D FQ++SI+A G SV+VSA TS+GKT +A A + ++R+ YT+P+K
Sbjct: 21 AITFPYELDTFQKTSIDALEEGDSVLVSAHTSAGKTTVALYAIAKALREKKRVIYTSPIK 80
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFREF + F ++VGL+TGD+ I +A L+MTTEILR+MLY+ M L
Sbjct: 81 ALSNQKFREFSDKF--DSVGLMTGDTTIKADADCLVMTTEILRSMLYRGTEM------LR 132
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH--GK 330
+V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH K
Sbjct: 133 EVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFADWVESIHPTTK 192
Query: 331 TELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
+I + RPVPL Y A + ++DEKGK + + T V
Sbjct: 193 VHVIHTDYRPVPLQHYLYPAGADGIFLIVDEKGKFRDDNFGKAIASMGTEGVANGVGAAG 252
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
S K G H+ + + +++ + R+M P I F
Sbjct: 253 PANGSSKDPR----------GNHKGGGGRSHGGSSQSMMEIVKLVM---DRNMYPVIVFS 299
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGL----LKGVA 503
F + C+ L N + E + V E+ L + + PAI+ L +GV
Sbjct: 300 FAKAECERNALALSRLNFNNTEEDALVMEVFNNAMESLAEEDRKLPAIEHLHPLLKRGVG 359
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K LT
Sbjct: 360 IHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRYLT 419
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E QM+GRAGRRG+D G V+ + + +L G + L+S F +Y MVLNL
Sbjct: 420 GGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPDTLKQLTGGGADVLLSSFHLTYNMVLNL 479
Query: 624 L 624
L
Sbjct: 480 L 480
>gi|407849043|gb|EKG03906.1| RNA helicase, putative [Trypanosoma cruzi]
Length = 948
Score = 290 bits (743), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 187/486 (38%), Positives = 262/486 (53%), Gaps = 45/486 (9%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + + +D FQ+ SI+A G SV+VSA TS+GKT +A A + +RR+ YT+P+K
Sbjct: 19 AMTFPYELDSFQKLSIDALEDGDSVLVSAHTSAGKTTVALYAIAKALREKRRVIYTSPIK 78
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFREF E F ++VGL+TGD+ I ++ L+MTTEILR+MLY+ M L
Sbjct: 79 ALSNQKFREFSEKF--DSVGLMTGDTTIKADSDCLVMTTEILRSMLYRGTEM------LR 130
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH--GK 330
+V ++ DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH K
Sbjct: 131 EVGCVIFDEVHYMRDKSRGVVWEETITLLPEGCQYVFLSATIPNAREFADWVESIHPGTK 190
Query: 331 TELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHM--NRKLSLNYLQLSTSEVKPYKDG 386
+I + RPVPL Y A + ++DE+GK N + +++ + +E G
Sbjct: 191 VHVIHTDYRPVPLQHYLYPCGADGIFLIVDEQGKFRDDNFRRAMSSMGAMDAEA-----G 245
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
G+ + K A ++ G+ + + I ++ + +M P I
Sbjct: 246 GANGADVSKAA-------TSTRGKRKPPRKGTQPI--------MEIIKLAMDHNMYPIIV 290
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF----RILYPDAVREPAIKGLL--- 499
F F+R C+ L N + M E L + F L D + PAI+ LL
Sbjct: 291 FSFSRAECERNALALSKLNFNN---MEEDALVTEVFSNAMECLAEDDRQLPAIEHLLPLL 347
Query: 500 -KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+GV HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K
Sbjct: 348 KRGVGIHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEK 407
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
LT E QM+GRAGRRG+D G V+ + E +L G + L S F +Y
Sbjct: 408 NRYLTGGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPETLKQLTGGGADVLNSSFHLTYN 467
Query: 619 MVLNLL 624
MVLNLL
Sbjct: 468 MVLNLL 473
>gi|403416970|emb|CCM03670.1| predicted protein [Fibroporia radiculosa]
Length = 1137
Score = 290 bits (743), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 186/513 (36%), Positives = 261/513 (50%), Gaps = 83/513 (16%)
Query: 144 NEMIDVDEL-ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ 202
N + DVD+L + Y F +D FQ+ ++ G SV V+A TS+GKT++AE A +
Sbjct: 208 NGVSDVDDLLPTSYPFELDTFQKEAVYHLEMGDSVFVAAHTSAGKTVVAEYAIALAGKHM 267
Query: 203 RRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSV 262
R YT+P+KALSNQK+R+F++TF ++VG+LTGD IN EA LIMTTEILR+MLY+
Sbjct: 268 TRAIYTSPIKALSNQKYRDFKQTFSTSSVGILTGDVQINPEANCLIMTTEILRSMLYKGA 327
Query: 263 GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAG 322
++ DV+ ++ DEVHY++D RG VWEE+II P V II LSATV N E A
Sbjct: 328 DLIR------DVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFAD 381
Query: 323 WIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLD-----------EKGKHMNRK--- 367
W+G+ K +I++++RPVPL Y L ++D + + + RK
Sbjct: 382 WVGRTKKKDIYVISTAKRPVPLEHYLYAGRDLHKVVDANRSFLTQGYKDAAEALRRKQDK 441
Query: 368 ----LSLNYLQ-LSTSEVKPYKD--------GGSRRRNSRKHADMNSNNIVTSFGQHQLS 414
L +Q L P + GG R + A + +F HQ
Sbjct: 442 EREAAGLPPVQRLGARAAAPQRGQRGGPAGRGGQRGSAPARGAPVARGGSARTF--HQPD 499
Query: 415 KNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE 474
KN + L +LR + +LP + F +++ C+ L + +L E
Sbjct: 500 KN-----------LYVHLLGNLRKKSLLPVVVFTLSKKRCEENASTLTNADLCTSVE--- 545
Query: 475 VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 534
KR HH G LPI K +E LF RGLVKV+FATET
Sbjct: 546 -----KRI----------------------HHGGLLPIVKEVVEILFARGLVKVLFATET 578
Query: 535 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTP 591
A G+NMPA+ V S + K + + E QMAGRAGRRG+D+ G VV+V P
Sbjct: 579 FAMGVNMPAKCVVFSGIRKHDGRSFRDILAGEYTQMAGRAGRRGLDSTGTVVIVANDDVP 638
Query: 592 YEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+GA + ++ L SQF +Y M+LNLL
Sbjct: 639 EQGALQ--NMILGTPSKLQSQFRLTYNMILNLL 669
>gi|340057335|emb|CCC51680.1| putative ATP-dependent DEAD/H RNA helicae [Trypanosoma vivax Y486]
Length = 948
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 185/481 (38%), Positives = 262/481 (54%), Gaps = 38/481 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + + +D FQ+ SI+A G SV+VSA TS+GKT +A A + ++R+ YT+P+K
Sbjct: 23 ALTFPYELDAFQKDSIDALEDGDSVLVSAHTSAGKTTVALYAIAKALREKKRVIYTSPIK 82
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFREF + F ++VGL+TGD+ I ++ L+MTTEILR+MLY+ M L
Sbjct: 83 ALSNQKFREFSDKF--DSVGLMTGDTTIKVDSDCLVMTTEILRSMLYRGTEM------LR 134
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH--GK 330
+V ++ DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA+E A W+ IH K
Sbjct: 135 EVGCVIFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNANEFANWVESIHPGTK 194
Query: 331 TELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
+I ++ RPVPL Y A + ++DE GK N+ Q + + V G
Sbjct: 195 VHVIHTNYRPVPLHHYLYPCGADGIFLIVDEHGKFRED----NFRQ-AMASVGATSAGEG 249
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
+S+ A L++ A R+ P +++ + + +R+M P I F
Sbjct: 250 NGESSKSGA---------------LARGKQKASRKGAEP-IMEIIKLVMNRNMYPIIVFS 293
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KGVA 503
F + C+ L N E + V E+ L + R PAI+ LL +GV
Sbjct: 294 FAKAECERNALALSKLNFNSTEEDALVTEVFNNAMECLAEEDRRLPAIEHLLPLLRRGVG 353
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K LT
Sbjct: 354 IHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGETNRYLT 413
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E QM+GRAGRRG+D G V+ + E ++ G + L S F +Y MVLNL
Sbjct: 414 GGEYIQMSGRAGRRGLDRVGVVIAMVNEAVEPETLRQITGGGADVLNSSFHLTYNMVLNL 473
Query: 624 L 624
L
Sbjct: 474 L 474
>gi|68488964|ref|XP_711675.1| hypothetical protein CaO19.1335 [Candida albicans SC5314]
gi|68489001|ref|XP_711657.1| hypothetical protein CaO19.8915 [Candida albicans SC5314]
gi|77023008|ref|XP_888948.1| hypothetical protein CaO19_1335 [Candida albicans SC5314]
gi|46432976|gb|EAK92435.1| hypothetical protein CaO19.8915 [Candida albicans SC5314]
gi|46432995|gb|EAK92453.1| hypothetical protein CaO19.1335 [Candida albicans SC5314]
gi|76573761|dbj|BAE44845.1| hypothetical protein [Candida albicans]
Length = 1106
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 177/480 (36%), Positives = 260/480 (54%), Gaps = 35/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I R SV+VSA TS+GKT++AE A ++ +++R+ YT+P+K
Sbjct: 178 ARTYPFTLDPFQDTAISCIDRNESVLVSAHTSAGKTVVAEYAIAQSLRDKQRVIYTSPIK 237
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFRE + FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 238 ALSNQKFRELQAIFGD--VGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEVMR------ 289
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V +V DEVHY+ D SRG VWEE II P +V + LSAT+ NA E A WI +IH +
Sbjct: 290 EVAWVVFDEVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKIHNQPC 349
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y + + ++DEKG +S + S
Sbjct: 350 HVVYTDFRPTPLQHYLFPAGGDGIHLVVDEKGTFREENFQKAMATISDNSGDDPASSDSG 409
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R N + + N HQ K I I + + +++ + P I F F
Sbjct: 410 RGNKKGKTNKGRN--------HQDGKGDIYKIVK---------MIYMKKYN--PVIVFSF 450
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C++ + + + E + + L P+A RE P IK +L +G+
Sbjct: 451 SKRDCESLALKMSKLDFNTDEERNSLTQIFYNAIELLPEADRELPQIKNILPLLKRGIGI 510
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K G ++
Sbjct: 511 HHSGLLPILKEIIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGVGFRWVSG 570
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 571 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 630
Score = 41.6 bits (96), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 1067
G AA + +EL + +L + +L P Q+ + ++ + + L K + EP+
Sbjct: 938 GRVAAELSTGDELMITELLFSGFFNELTPQQICGLLSAFIFQERAKELPKLKPELAEPAK 997
Query: 1068 TVINVINVLDE-HRSSFLELQEKHGVEIPCCLDSQFS-GMVEA---WASGLTWREMMMDC 1122
+ N + + + S LE+ EK +E QF+ +VE W++G ++ +
Sbjct: 998 VIHETANKIAKISKQSGLEIVEKDYIE-------QFNLALVEVVFVWSNGASFSSICKMT 1050
Query: 1123 ALDDGDLARLLRRTIDLLAQI 1143
+ +G + R LRR I+L+ Q+
Sbjct: 1051 DIYEGSIIRALRREIELIKQL 1071
>gi|342887095|gb|EGU86725.1| hypothetical protein FOXB_02734 [Fusarium oxysporum Fo5176]
Length = 1275
Score = 290 bits (742), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 184/519 (35%), Positives = 264/519 (50%), Gaps = 53/519 (10%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V ++A + F +D FQ+ ++ G SV V+A TS+GKT++AE A + + YT
Sbjct: 291 VPDMAREWPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYT 350
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR+TF + VG+LTGD IN EA LIMTTEILR+MLY+ ++
Sbjct: 351 SPIKALSNQKFRDFRQTF--DEVGILTGDVQINPEASCLIMTTEILRSMLYRGADLIR-- 406
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D RG VWEE+II P+ V +I LSATV N E A W+G+
Sbjct: 407 ----DVEFVIFDEVHYVNDFERGVVWEEVIIMLPEHVSLILLSATVPNTKEFASWVGRTK 462
Query: 329 GK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLS------TSEVK 381
K +I++ +RPVPL Y + ++D + K + + + + +E
Sbjct: 463 QKDIYVISTPKRPVPLEHYLWAGKNIHKIVDSEKKFIEKGWKDAHFAIQGKDKPKPAETT 522
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI-----RRSQVPQVI------ 430
GG+ R N R G Q + R S P +
Sbjct: 523 VATRGGNPRGNQRGGTQRGGPQRGGRGGGQQQRGGNQQRGRGGPPRASHAPGHMGRGGRA 582
Query: 431 ---------DTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVE 476
LW +L+ +LPA F+F+++ C+ L + + E S +
Sbjct: 583 GGFTSVAQDKNLWVHLVQYLKKSTLLPACIFVFSKKRCEENADALSNQDFCTAAEKSHIH 642
Query: 477 LAL-KRFRILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 531
+ + K L PD + P I + L +G+A HH G LPI K +E LF + LVKV+FA
Sbjct: 643 MIIEKSVARLKPDDRQLPQIIRLRELLSRGIAVHHGGLLPIVKELVEILFAQTLVKVLFA 702
Query: 532 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591
TET A G+N+P RT V S K L E QMAGRAGRRG+D G V++V P
Sbjct: 703 TETFAMGLNLPTRTVVFSGYRKHDGHSFRNLLPGEYTQMAGRAGRRGLDTVGSVIIV--P 760
Query: 592 YEGAEECC------KLLFAGVEPLVSQFTASYGMVLNLL 624
G ++ ++ L SQF +Y M+LNLL
Sbjct: 761 PGGLDDAPPVADLRNMILGEPSKLRSQFRLTYNMILNLL 799
>gi|46111799|ref|XP_382957.1| hypothetical protein FG02781.1 [Gibberella zeae PH-1]
Length = 1271
Score = 290 bits (742), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 185/518 (35%), Positives = 265/518 (51%), Gaps = 52/518 (10%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V ++A + F +D FQ+ ++ G SV V+A TS+GKT++AE A + + YT
Sbjct: 288 VPDMAREWPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYT 347
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR+TF + VG+LTGD IN EA LIMTTEILR+MLY+ ++
Sbjct: 348 SPIKALSNQKFRDFRQTF--DEVGILTGDVQINPEASCLIMTTEILRSMLYRGADIIR-- 403
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D RG VWEE+II P+ V +I LSATV N E A W+G+
Sbjct: 404 ----DVEFVIFDEVHYVNDFERGVVWEEVIIMLPEHVSLILLSATVPNTKEFASWVGRTK 459
Query: 329 GK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLS------TSEVK 381
K +I++ +RPVPL Y + ++D + K + + + + +E
Sbjct: 460 QKDIYVISTPKRPVPLEHYLWAGKDIHKIVDSEKKFIEKGWKDAHFAIQGRDKQKPAETT 519
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI----RRSQVPQVI------- 430
GG+ R N R G Q N R S P +
Sbjct: 520 VATRGGNPRGNQRGGTQRGGPQRGGRGGGQQRGGNQQRGRGGPPRASHAPGHMGRGGRAG 579
Query: 431 --------DTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL 477
LW +L+ + +LPA F+F+++ C+ L + + E S + +
Sbjct: 580 GFTSVAQDKNLWVHLVQYLKKQTLLPACIFVFSKKRCEENADALSNQDFCTASEKSHIHM 639
Query: 478 AL-KRFRILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 532
+ K L PD + P I + L +G+A HH G LPI K +E LF + LVKV+FAT
Sbjct: 640 IIEKSVARLKPDDRQLPQIIRLRELLSRGIAVHHGGLLPIVKELVEILFAQTLVKVLFAT 699
Query: 533 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592
ET A G+N+P RT V S K L E QMAGRAGRRG+D G V++V P
Sbjct: 700 ETFAMGLNLPTRTVVFSGYRKHDGHSFRNLLPGEYTQMAGRAGRRGLDTVGSVIIV--PP 757
Query: 593 EGAEECC------KLLFAGVEPLVSQFTASYGMVLNLL 624
G ++ ++ L SQF +Y M+LNLL
Sbjct: 758 GGLDDAPPVADLRNMILGEPSKLRSQFRLTYNMILNLL 795
>gi|449310650|gb|AGE92552.1| ATP-dependent RNA helicase, partial [Leishmania braziliensis]
Length = 949
Score = 290 bits (742), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 185/481 (38%), Positives = 263/481 (54%), Gaps = 30/481 (6%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + + +D FQ++SI+A G SV+VSA TS+GKT +A A + ++R+ YT+P+K
Sbjct: 16 AITFPYELDTFQKASIDALEDGDSVLVSAHTSAGKTTVALYAIAKALREKKRVIYTSPIK 75
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFREF E F ++VGL+TGD+ I ++ L+MTTEILR+MLY+ M L
Sbjct: 76 ALSNQKFREFSEKF--DSVGLMTGDTTIKADSDCLVMTTEILRSMLYRGTEM------LR 127
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH--GK 330
+V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH K
Sbjct: 128 EVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFADWVESIHPTTK 187
Query: 331 TELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
+I ++ RPVPL Y A + ++DEKGK N+ + TS G+
Sbjct: 188 VHVIHTNYRPVPLQHYLYPAGADGIFLIVDEKGKFRED----NFGKAMTSM-------GA 236
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
+ A + N+ + ++ SQ +++ + + R+M P I F
Sbjct: 237 EGSANGAGAAVPGNSASSGPRGNKGGGGGHRRGGSSQ--SMMEIVKLVMDRNMYPVIVFS 294
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KGVA 503
F + C+ L N + E + V E+ L + + PAI+ LL +GV
Sbjct: 295 FAKAECERNALALSRLNFNNTEEDALVMEVFGNAMESLAEEDRKLPAIEHLLPLLKRGVG 354
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K LT
Sbjct: 355 IHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRYLT 414
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E QM+GRAGRRG+D G V+ + + +L G + L+S F +Y MVLNL
Sbjct: 415 GGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPDTLKQLTGGGADVLLSSFHLTYNMVLNL 474
Query: 624 L 624
L
Sbjct: 475 L 475
>gi|261192172|ref|XP_002622493.1| DEAD/DEAH box RNA helicase [Ajellomyces dermatitidis SLH14081]
gi|239589368|gb|EEQ72011.1| DEAD/DEAH box RNA helicase [Ajellomyces dermatitidis SLH14081]
Length = 1298
Score = 290 bits (742), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 190/549 (34%), Positives = 280/549 (51%), Gaps = 55/549 (10%)
Query: 120 APSWREEFK-WQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVV 178
AP+ ++ K W V + E+ F + + D +A + F +D FQ+ ++ G SV
Sbjct: 304 APTSKKGGKEWAHVVDINKEITNFYDLVPD---MAREWPFELDTFQKEAVYHLENGDSVF 360
Query: 179 VSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDS 238
V+A TS+GKT++AE A + + YT+P+KALSNQKFR+FR TF D VG+LTGD
Sbjct: 361 VAAHTSAGKTVVAEYAIALAAKHMTKAIYTSPIKALSNQKFRDFRTTFED--VGILTGDV 418
Query: 239 AINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII 298
IN EA LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++D+ RG VWEE+I
Sbjct: 419 QINPEASCLIMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDLERGVVWEEVI 472
Query: 299 IYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLL 357
I P+ V +I LSATV N E A W+G+ K +I++ +RPVPL Y ++ ++
Sbjct: 473 IMLPEHVTLILLSATVPNTYEFASWVGRTKKKDIYVISTPKRPVPLEHYLWADKSMHKIV 532
Query: 358 D------EKG-----------------------KHMNRKLSLNYLQLSTSEVKPYKDGGS 388
D EKG + N + + + GG+
Sbjct: 533 DSNKNFIEKGWKKADDILSGRDKLRAQKAAEAQSNTNNRGGHGDRGRGGQPQRGNQRGGA 592
Query: 389 RRRNS--RKHADMNSNNIVTSFGQHQLSKNSINAIRR--SQVPQV-IDTLWHLRSRDMLP 443
+R + R A S G +++ R +Q + + + HLR ++LP
Sbjct: 593 QRGGTQQRGSAQQRGRGQPVSRGTGNIARTGRGGGRTTVAQDRNIWVHLVQHLRKENLLP 652
Query: 444 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKG----L 498
A F+F++R C+ L + + E S + + + K L + P I+ L
Sbjct: 653 ACIFVFSKRRCEENADSLSNQDFCTASEKSTIHMIIEKSLARLKTEDRGLPQIRRVRELL 712
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+ HH G LPI K +E LF + LVKV+FATET A G+N+P RT V S K
Sbjct: 713 SRGIGVHHGGLLPIIKEIVEILFAKTLVKVLFATETFAMGLNLPTRTVVFSGFRKHDGRS 772
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC---KLLFAGVEPLVSQFTA 615
L E QMAGRAGRRG+D G V++V + + A +++ L SQF
Sbjct: 773 FRDLLPGEYTQMAGRAGRRGLDTVGSVIIVASGKDEAPPAGTLRRMILGDPTKLRSQFRL 832
Query: 616 SYGMVLNLL 624
+Y M+LNLL
Sbjct: 833 TYNMILNLL 841
>gi|384484103|gb|EIE76283.1| hypothetical protein RO3G_00987 [Rhizopus delemar RA 99-880]
Length = 1061
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 185/481 (38%), Positives = 264/481 (54%), Gaps = 39/481 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A +Y F +D FQR ++ + R SV+VSA TS+GKT++AE A + N++R+ YT+P+K
Sbjct: 138 ARVYPFTLDPFQRVAVSSIERNESVLVSAHTSAGKTVVAEYAIAQCLKNKQRVIYTSPIK 197
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF E FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 198 ALSNQKYREFTEEFGD--VGLMTGDVTINPQASCLVMTTEILRSMLYRGSEVIR------ 249
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V +V DE+HY+ D RG VWEE II P V+ + LSAT+ NA E A WI +IH +
Sbjct: 250 EVAWVVYDEIHYMRDSERGVVWEESIILLPDVVRYVFLSATIPNAMEFAEWICKIHQQPC 309
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y + + ++DEK + R+ S + S+ K G+R
Sbjct: 310 HIVYTDFRPTPLQHYLFPAGGDGIHLVVDEKSRF--REDSFQKAIAALSDGKGDDPSGTR 367
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R + N + + I R + V+ +H P I F F
Sbjct: 368 ARGKKGKTYKGGN-----------ANDGPADIYRI-IKMVMMKNYH-------PVIVFSF 408
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KGVAA 504
+++ C+A + + DE E V ++ L D + P I+ LL +G+
Sbjct: 409 SKKECEANALLMSKLDFNDENERDMVSQVFTNAISGLNEDDRQLPQIQQLLPLLRRGIGV 468
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K G +TS
Sbjct: 469 HHGGLLPIMKETIEVLFQEGLLKVLFATETFSIGLNMPAKTVVFTSVRKYDGKGTRWVTS 528
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG-VEPLVSQFTASYGMVLNL 623
E QM+GRAGRRG+D RG VV++ + K + G + + S F SY M+LNL
Sbjct: 529 GEYIQMSGRAGRRGLDERG-VVIMMIDEKMEPAVAKGMVKGESDRMNSAFHLSYNMILNL 587
Query: 624 L 624
L
Sbjct: 588 L 588
>gi|398024538|ref|XP_003865430.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
gi|322503667|emb|CBZ38753.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
Length = 954
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 188/481 (39%), Positives = 255/481 (53%), Gaps = 30/481 (6%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + + +D FQ++SI+A G SV+VSA TS+GKT +A A + ++RI YT+P+K
Sbjct: 21 AITFPYELDTFQKTSIDALEEGDSVLVSAHTSAGKTTVALYAIAKALREKKRIIYTSPIK 80
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFREF E F ++VGL+TGD+ I +A L+MTTEILR+MLY+ M L
Sbjct: 81 ALSNQKFREFSEKF--DSVGLMTGDTTIKADADCLVMTTEILRSMLYRGTEM------LR 132
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH--GK 330
+V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH K
Sbjct: 133 EVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFADWVENIHPTTK 192
Query: 331 TELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
+I + RPVPL Y A + ++DEKGK + +
Sbjct: 193 VHVIHTEYRPVPLQHYLYPAGADGIFLIVDEKGKFRDDNFGKAIASMGAEGGANGVGAAG 252
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
S K D N+ + H S+ I V V+D R+M P I F
Sbjct: 253 PGNGSSK--DPRGNHKGSGGRSHGGFSQSMMEI----VKLVMD-------RNMYPVIVFS 299
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KGVA 503
F + C+ L N + E + V E+ L + + PAI+ L +GV
Sbjct: 300 FAKAECERNALALSRLNFNNTEEDALVMEVFNNAMESLAEEDRKLPAIEHLQPLLKRGVG 359
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K LT
Sbjct: 360 IHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRYLT 419
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E QM+GRAGRRG+D G V+ + + +L G + L+S F +Y MVLNL
Sbjct: 420 GGEYIQMSGRAGRRGLDRVGVVITMVDEAVEPDTLKQLTSGGADVLLSSFHLTYNMVLNL 479
Query: 624 L 624
L
Sbjct: 480 L 480
>gi|198433188|ref|XP_002130768.1| PREDICTED: similar to superkiller viralicidic activity 2-like
[Ciona intestinalis]
Length = 1235
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 188/516 (36%), Positives = 272/516 (52%), Gaps = 45/516 (8%)
Query: 119 PAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVV 178
P E KW + V F + V +A + F +D FQ+ ++ SV
Sbjct: 271 PGDKPLSEEKWAYKVDIDTSVTNFHQQ---VPVMARTWPFELDTFQKQAVLKLEDRKSVF 327
Query: 179 VSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDS 238
V+A TS+GKT++AE A + + R+ YT+P+KALSNQKFR+F++TF D VGL+TGD
Sbjct: 328 VAAHTSAGKTVVAEYAIALSAKHMTRVIYTSPIKALSNQKFRDFKQTFSD--VGLITGDV 385
Query: 239 AINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII 298
IN +A LIMTTEILR+MLY + D++ ++ DEVHY++D RG VWEE++
Sbjct: 386 QINPDAFCLIMTTEILRSMLYNGSDTIR------DLEWVIFDEVHYINDSERGVVWEEVL 439
Query: 299 IYCPKEVQIICLSATVANADELAGWIGQI-HGKTELITSSRRPVPLTWYFSTKTALLPLL 357
I P ++ LSATV N E A WIG+ K +I++ +RPVPLT Y T
Sbjct: 440 IMLPVHCNVVLLSATVPNTMEFANWIGRTKQKKIYVISTQKRPVPLTHYLYTG------- 492
Query: 358 DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNS 417
N + + + L + + G ++ + + N + Q + S
Sbjct: 493 -------NSNKTNDQMFLIVDSNRKFDTAGYQKALTARTERSNKQQKTGAKVQRITNPAS 545
Query: 418 INAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL 477
I S +++ L L + LP + F F+R+ CD L +L E SE+ +
Sbjct: 546 DKGIWLS----LLNRLCKL---NQLPVVAFTFSRKRCDENAALLSSLDLTSTQEKSEIHI 598
Query: 478 ALKR-FRILYPDAVREPAIK----GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 532
+ + + L P ++ L G+ HH+G LPI K +E LF RGLVK++FAT
Sbjct: 599 FVNKCVKKLKGSDQNLPQVQQMSEQLQHGIGVHHSGILPILKEVVEMLFARGLVKLLFAT 658
Query: 533 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---Q 589
ET A G+NMPART V SL K + L + E QMAGRAGRRG+D+ G+V+++ Q
Sbjct: 659 ETFAMGVNMPARTVVFDSLRKHDGTKMRNLLAGEYIQMAGRAGRRGLDDVGNVIILCKGQ 718
Query: 590 TPYEGAEECCKLLFAG-VEPLVSQFTASYGMVLNLL 624
P E AE +++ G L SQF +YGM+LNLL
Sbjct: 719 VP-EMAE--LQIMMLGRPTKLESQFRLTYGMILNLL 751
>gi|146104011|ref|XP_001469707.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
gi|134074077|emb|CAM72819.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
Length = 954
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 188/481 (39%), Positives = 255/481 (53%), Gaps = 30/481 (6%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + + +D FQ++SI+A G SV+VSA TS+GKT +A A + ++RI YT+P+K
Sbjct: 21 AITFPYELDTFQKTSIDALEEGDSVLVSAHTSAGKTTVALYAIAKALREKKRIIYTSPIK 80
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFREF E F ++VGL+TGD+ I +A L+MTTEILR+MLY+ M L
Sbjct: 81 ALSNQKFREFSEKF--DSVGLMTGDTTIKADADCLVMTTEILRSMLYRGTEM------LR 132
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH--GK 330
+V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH K
Sbjct: 133 EVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFADWVENIHPTTK 192
Query: 331 TELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
+I + RPVPL Y A + ++DEKGK + +
Sbjct: 193 VHVIHTEYRPVPLQHYLYPAGADGIFLIVDEKGKFRDDNFGKAIASMGAEGGANGVGAAG 252
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
S K D N+ + H S+ I V V+D R+M P I F
Sbjct: 253 PGNGSSK--DPRGNHKGSGGRSHGGFSQSMMEI----VKLVMD-------RNMYPVIVFS 299
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KGVA 503
F + C+ L N + E + V E+ L + + PAI+ L +GV
Sbjct: 300 FAKAECERNALALSRLNFNNTEEDALVMEVFNNAMESLAEEDRKLPAIEHLQPLLKRGVG 359
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K LT
Sbjct: 360 IHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRYLT 419
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E QM+GRAGRRG+D G V+ + + +L G + L+S F +Y MVLNL
Sbjct: 420 GGEYIQMSGRAGRRGLDRVGVVITMVDEAVEPDTLKQLTSGGADVLLSSFHLTYNMVLNL 479
Query: 624 L 624
L
Sbjct: 480 L 480
>gi|449310626|gb|AGE92540.1| ATP-dependent RNA helicase [Leishmania braziliensis]
Length = 954
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 185/481 (38%), Positives = 263/481 (54%), Gaps = 30/481 (6%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + + +D FQ++SI+A G SV+VSA TS+GKT +A A + ++R+ YT+P+K
Sbjct: 21 AITFPYELDTFQKASIDALEDGDSVLVSAHTSAGKTTVALYAIAKALREKKRVIYTSPIK 80
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFREF E F ++VGL+TGD+ I ++ L+MTTEILR+MLY+ M L
Sbjct: 81 ALSNQKFREFSEKF--DSVGLMTGDTTIKADSDCLVMTTEILRSMLYRGTEM------LR 132
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH--GK 330
+V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH K
Sbjct: 133 EVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFADWVESIHPTTK 192
Query: 331 TELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
+I ++ RPVPL Y A + ++DEKGK N+ + TS G+
Sbjct: 193 VHVIHTNYRPVPLQHYLYPAGADGIFLIVDEKGKFRED----NFGKAMTSM-------GA 241
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
+ A + N+ + ++ SQ +++ + + R+M P I F
Sbjct: 242 EGSANGAGAAVPGNSASSGPRGNKGGGGGHRRGGSSQ--SMMEIVKLVMDRNMYPVIVFS 299
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KGVA 503
F + C+ L N + E + V E+ L + + PAI+ LL +GV
Sbjct: 300 FAKAECERNALALSRLNFNNTEEDALVMEVFGNAMESLAEEDRKLPAIEHLLPLLKRGVG 359
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K LT
Sbjct: 360 IHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRYLT 419
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E QM+GRAGRRG+D G V+ + + +L G + L+S F +Y MVLNL
Sbjct: 420 GGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPDTLKQLTGGGADVLLSSFHLTYNMVLNL 479
Query: 624 L 624
L
Sbjct: 480 L 480
>gi|452959574|gb|EME64911.1| ATP-dependent RNA helicase [Rhodococcus ruber BKS 20-38]
Length = 771
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 177/489 (36%), Positives = 252/489 (51%), Gaps = 56/489 (11%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + A V+V APT +GKT++ E A +A + FYTTP+KALSNQ
Sbjct: 18 FTLDDFQVRACRALDEDRDVLVCAPTGAGKTVVGEFAVHLALAAGGKCFYTTPIKALSNQ 77
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD-VDV 276
K+ + GD VGLLTGD +I+ A +++MTTE+LR+ML+ S L D +
Sbjct: 78 KYADLVARLGDEQVGLLTGDVSIDPHAPVVVMTTEVLRSMLH-------GRSPLLDGLTH 130
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
+V+DEVHYL+D RG VWEE I+Y P V+++ LSATV+NA+E W+G + G T ++
Sbjct: 131 VVMDEVHYLADRERGAVWEEAILYLPAPVRLVSLSATVSNAEEFGAWLGLVRGATTVVVE 190
Query: 337 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 396
RPVPL + L L ++ L + Y+ R+
Sbjct: 191 ETRPVPLHQHVLAGGRLFDLFSPTTGAVDENL-VRYVA------------------HRQL 231
Query: 397 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
D + + R P+++ L + +LPAIWF F+R GCD
Sbjct: 232 VDAAPAVSSRRRRRRSATPGPAGVDR----PELVA---RLEAESLLPAIWFRFSRSGCDE 284
Query: 457 AVQ--YLEDCNLLDECEMSEVELALKRFRILYPDAVREPA----------IKGLLKGVAA 504
AV L + +++ + + R A PA + GL +G AA
Sbjct: 285 AVAECLRSSLRLTEAADVTHIRRIVDRH-----TAGVSPADLDALGFADWLDGLERGFAA 339
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HHAG +P+++ +EELF GLV++VFATETLA G+NMPART VL L K TA+G ++LT+
Sbjct: 340 HHAGMVPVFRHAVEELFGLGLVRIVFATETLAVGVNMPARTVVLERLVKHTAAGPVRLTA 399
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL- 623
E Q+ GRAGRRG+D GH V++ +P L PL S Y +NL
Sbjct: 400 GEYTQLTGRAGRRGVDREGHAVVLWSPEVQPATVAGLASTRTYPLNSSLRVGYNTAVNLV 459
Query: 624 ----LAGAK 628
+AGA+
Sbjct: 460 DRLGVAGAR 468
>gi|389603290|ref|XP_001568941.2| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505796|emb|CAM44074.2| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 954
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 185/481 (38%), Positives = 263/481 (54%), Gaps = 30/481 (6%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + + +D FQ++SI+A G SV+VSA TS+GKT +A A + ++R+ YT+P+K
Sbjct: 21 AITFPYELDTFQKASIDALEDGDSVLVSAHTSAGKTTVALYAIAKALREKKRVIYTSPIK 80
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFREF E F ++VGL+TGD+ I ++ L+MTTEILR+MLY+ M L
Sbjct: 81 ALSNQKFREFSEKF--DSVGLMTGDTTIKADSDCLVMTTEILRSMLYRGTEM------LR 132
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH--GK 330
+V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH K
Sbjct: 133 EVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFADWVESIHPTTK 192
Query: 331 TELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
+I ++ RPVPL Y A + ++DEKGK N+ + TS G+
Sbjct: 193 VHVIHTNYRPVPLQHYLYPAGADGIFLIVDEKGKFRED----NFGKAMTSM-------GA 241
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
+ A + N+ + ++ SQ +++ + + R+M P I F
Sbjct: 242 EGSANGAGAAVPGNSASSGPRGNKGGGGGHRRGGSSQ--SMMEIVKLVMDRNMYPVIVFS 299
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KGVA 503
F + C+ L N + E + V E+ L + + PAI+ LL +GV
Sbjct: 300 FAKAECERNALALSRLNFNNTEEDALVMEVFGNAMESLAEEDRKLPAIEHLLPLLKRGVG 359
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K LT
Sbjct: 360 IHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRYLT 419
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E QM+GRAGRRG+D G V+ + + +L G + L+S F +Y MVLNL
Sbjct: 420 GGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPDTLKQLTGGGADVLLSSFHLTYNMVLNL 479
Query: 624 L 624
L
Sbjct: 480 L 480
>gi|156085204|ref|XP_001610085.1| DSHCT (NUC185) domain containing DEAD/DEAH box helicase family
protein [Babesia bovis]
gi|154797337|gb|EDO06517.1| DSHCT (NUC185) domain containing DEAD/DEAH box helicase family
protein [Babesia bovis]
Length = 986
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 260/480 (54%), Gaps = 49/480 (10%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A Y F +D FQ+ SIE +G SV+V A TS+GKT++AE A + ++RRI YT+P
Sbjct: 75 EPARSYPFTLDDFQKRSIECLEKGESVLVCAHTSAGKTVVAEYAIAMGLRDKRRIIYTSP 134
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+R + F D VGL+TGD +N +A +++MTTEILR+MLY+ +V
Sbjct: 135 IKALSNQKYRNLCDEFVD--VGLMTGDVTLNPDASVMVMTTEILRSMLYRGSEIVQ---- 188
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG- 329
++ ++ DEVHY+ D RG VWEE II P++V ++ LSAT+ N+ E A WI +I
Sbjct: 189 --EMKWVIFDEVHYMRDAERGVVWEETIILIPQKVNLVFLSATIPNSIEFAEWICRIKNM 246
Query: 330 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
+I + RP PL Y T+ LN + L D G
Sbjct: 247 PCNVIATDYRPTPLQHYIYTQ------------------KLNGINLVLD------DSGRF 282
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R+++ +A +NI G+ + +N+ ++ +VI T+ H + PAI F F
Sbjct: 283 RQDAFNNAMKTIDNI--EEGRRKRVRNT------KEIEEVI-TMCH--EKKFTPAIVFAF 331
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KGVAA 504
++ C+A L+ ++ DE E + + E+ L D + P +L +G+
Sbjct: 332 SKSECEANATVLKSLDMTDEAEKTLITEIYQNAMATLADDDRKLPQTVFMLPLLRRGIGI 391
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH G LPI K IE LFQ GL+KV+F+TET + G+NMPAR V ++LSK +TS
Sbjct: 392 HHGGLLPIIKEIIEILFQEGLIKVLFSTETFSMGVNMPARCVVFTNLSKWDGQTNRLITS 451
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QMAGRAGRRG+D G V+++ EE + L S F Y M+LNL+
Sbjct: 452 GEYIQMAGRAGRRGLDEHGLVIIMMDRGIKPEEAKAIFMGKANRLDSSFHLGYNMLLNLM 511
>gi|407407933|gb|EKF31542.1| RNA helicase, putative [Trypanosoma cruzi marinkellei]
Length = 948
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 187/484 (38%), Positives = 260/484 (53%), Gaps = 41/484 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + + +D FQ+ SI+A G SV+VSA TS+GKT +A A + +RR+ YT+P+K
Sbjct: 19 AMTFPYELDSFQKLSIDALEDGDSVLVSAHTSAGKTTVALYAIAKALREKRRVIYTSPIK 78
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFREF E F ++VGL+TGD+ I ++ L+MTTEILR+MLY+ M L
Sbjct: 79 ALSNQKFREFSEKF--DSVGLMTGDTTIKADSDCLVMTTEILRSMLYRGTEM------LR 130
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
+V ++ DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH T
Sbjct: 131 EVGCVIFDEVHYMRDKSRGVVWEETITLLPEGCQYVFLSATIPNAREFADWVESIHPGTN 190
Query: 332 -ELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
+I + RPVPL Y A + ++DE+GK + +S+ + GG+
Sbjct: 191 VHVIHTDYRPVPLQHYLYPCGADGIFLIVDEQGKFRDDNFRR---AMSSMGAMDAEAGGA 247
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
+ K A TS ++ R+ P +++ + +M P I F
Sbjct: 248 NGADVSKAA--------TS------TRGKRKPFRKGTQP-IMEIIKLTMDHNMYPIIVFS 292
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF----RILYPDAVREPAIKGLL----K 500
F++ C+ L N + M E L + F L D + PAI+ LL +
Sbjct: 293 FSKAECERNALALSKLNFNN---MEEDALVTEVFSNAMECLAEDDRQLPAIEHLLPLLKR 349
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
GV HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K
Sbjct: 350 GVGIHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNR 409
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
LT E QM+GRAGRRG+D G V+ + E +L G + L S F +Y MV
Sbjct: 410 YLTGGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPETLKQLTGGGADVLNSSFHLTYNMV 469
Query: 621 LNLL 624
LNLL
Sbjct: 470 LNLL 473
>gi|340794380|ref|YP_004759843.1| ATP-dependent DNA helicase [Corynebacterium variabile DSM 44702]
gi|340534290|gb|AEK36770.1| ATP-dependent DNA helicase [Corynebacterium variabile DSM 44702]
Length = 874
Score = 289 bits (740), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 186/567 (32%), Positives = 282/567 (49%), Gaps = 98/567 (17%)
Query: 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGL 233
G V+V APT SGKT++ E A + FYTTP+KALSNQK+ + +G++ VGL
Sbjct: 10 GRGVLVCAPTGSGKTVVGEFAVHLALERGGACFYTTPIKALSNQKYHDLVARYGEDKVGL 69
Query: 234 LTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTV 293
LTGD +IN +A +++MTTE+LRNM+Y + L ++ +V+DEVH+L+D SRG V
Sbjct: 70 LTGDVSINGDAPVVVMTTEVLRNMVY------AGSDRLDNLTHVVMDEVHFLADPSRGPV 123
Query: 294 WEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTAL 353
WEE+I+ V ++ LSATV+NA+E GW+ + G+T+LI ++ RPVPL + +
Sbjct: 124 WEEVILNLDPSVVLVSLSATVSNAEEFGGWLTTVRGETDLIITTHRPVPLDQFMMVDKQI 183
Query: 354 LPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQL 413
LPL D KH + +E + G
Sbjct: 184 LPLNDP--KHPEEANRAVIAAAARAEETGRRTG--------------------------- 214
Query: 414 SKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--EDCNLLDECE 471
P+ D + + + MLPAI+FIF+R GCD AV+ L + L + +
Sbjct: 215 -------------PKRTDVVHRMGAAGMLPAIYFIFSRAGCDGAVRQLLVDRVRLTTDAD 261
Query: 472 MSEV--------------ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 517
E+ +L + FR + L G AAHHAG LP ++ +
Sbjct: 262 RDEILRTVDEGVQDIPTDDLGVLGFRQWR---------RALGNGYAAHHAGMLPAFRHIV 312
Query: 518 EELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRR 577
E+LF RGL+KV FATETLA GINMPAR+ VL L K ++LT + Q+ GRAGRR
Sbjct: 313 EDLFTRGLLKVCFATETLALGINMPARSVVLEKLVKYNGEAHVELTPGQYTQLTGRAGRR 372
Query: 578 GIDNRGHVVLVQTPYEGAEECCKLLFAGVE--PLVSQFTASYGMVLNLLAGAKVMHLSNE 635
GID +G+ V++ + G E AG PL S F Y M +NL+
Sbjct: 373 GIDTQGNAVVLWS--RGIEPHSVAHLAGTRTYPLDSTFRPGYNMAVNLI----------- 419
Query: 636 SDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAID 695
A + +A++++++SF Y + ++ +L + +++ L +++ +
Sbjct: 420 --------ATKGYTDAQRILDRSFAQYQTATHVVEQATQLTRRRRDLAGLEKDLAAEL-- 469
Query: 696 RKSRRLLSEAAYKEMANLQEELKAEKR 722
R L+ E A L+ +L +R
Sbjct: 470 RSQHTGLTATDVIEYAGLRRDLALAER 496
Score = 48.9 bits (115), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 1067
G + I E++L +A LR I DL PA+LAA +++V E + ++ + + P+
Sbjct: 705 GHRLSRIHHESDLLVAQCLRRGIWDDLDPAELAAAVSTVVFENRRETTGRHTTEV--PTE 762
Query: 1068 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM-----MDC 1122
+ + + + +E+HG+ + + F+ + W +G +
Sbjct: 763 ALAAAVTAVGRIHGELVSDEERHGLPLTREPQTGFATALHQWTAGAPLDYCLRAAEAAGA 822
Query: 1123 ALDDGDLARLLRRTIDLLAQI 1143
L GD R R IDLL QI
Sbjct: 823 QLTPGDFVRWCTRVIDLLEQI 843
>gi|240255527|ref|NP_190280.5| antiviral helicase SKI2 [Arabidopsis thaliana]
gi|332644703|gb|AEE78224.1| antiviral helicase SKI2 [Arabidopsis thaliana]
Length = 1347
Score = 289 bits (740), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 182/502 (36%), Positives = 269/502 (53%), Gaps = 39/502 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V ++A + F +D FQ+ +I +G SV V+A TS+GKT++AE A + R YT
Sbjct: 350 VPDMAIEFPFELDNFQKEAICCLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 409
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
P+K +SNQK+R+F F +VGLLTGD +I EA LIMTTEILR+MLY+ ++
Sbjct: 410 APIKTISNQKYRDFCGKF---DVGLLTGDVSIRPEASCLIMTTEILRSMLYRGADIIR-- 464
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D+ RG VWEE+II P+ + + LSATV N E A WIG+
Sbjct: 465 ----DIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTFEFADWIGRTK 520
Query: 329 GKTELIT-SSRRPVPLTWYFSTKTALLPLLDEK---------GKHMNRKLSLNYLQLSTS 378
K +T +++RPVPL L + + + K +K + N + ++
Sbjct: 521 QKEIRVTGTTKRPVPLEHCLFYSGELYKVCENEVFLSKGIKDAKDSQKKKNSNAVSVAPK 580
Query: 379 E---VKPYKDGG-SRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN--AIRRSQVPQVIDT 432
+ ++DG S++ + N ++ V G+ S NS N A RRS +
Sbjct: 581 QQMGSSAHQDGSKSQKHEAHSRGKQNKHSSVKDVGKSSYSGNSQNNGAFRRSAASNWLLL 640
Query: 433 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRIL------ 485
+ L +LP + F F++ CD L +L E SE+ + K F L
Sbjct: 641 INKLSKMSLLPVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRN 700
Query: 486 YPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
P +R ++ L +G+ HHAG LPI K +E LF RG++KV+F+TET A G+N PART
Sbjct: 701 LPQVLRLQSL--LHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPART 758
Query: 546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLL 602
V +L K QL E QMAGRAGRRG+D G VV++ + P E + +++
Sbjct: 759 VVFDALRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDEVPDES--DLRRVI 816
Query: 603 FAGVEPLVSQFTASYGMVLNLL 624
L SQF +Y M+L+LL
Sbjct: 817 VGSATRLESQFRLTYIMILHLL 838
>gi|359772313|ref|ZP_09275745.1| putative helicase, partial [Gordonia effusa NBRC 100432]
gi|359310546|dbj|GAB18523.1| putative helicase, partial [Gordonia effusa NBRC 100432]
Length = 432
Score = 289 bits (740), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 168/452 (37%), Positives = 247/452 (54%), Gaps = 27/452 (5%)
Query: 146 MIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205
M +D+ + F +D FQ + +A G V+V APT +GKT++ E A +A +
Sbjct: 1 MTHLDDFLARQAFALDPFQLRACDALQAGHGVLVCAPTGAGKTIVGEFAVHLALAQGTKC 60
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
FYTTP+KALSNQKF + G + VGLLTGD++IN +A +++MTTE++RNM+Y
Sbjct: 61 FYTTPIKALSNQKFNDLVAVHGADAVGLLTGDNSINPDADVVVMTTEVVRNMIY------ 114
Query: 266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325
++ L + +V+DEVH+L+D RG VWEE+I++ V ++ LSATV+NA+E W+
Sbjct: 115 ANSPALQGLSHVVMDEVHFLADRFRGAVWEEVILHLDPSVSVVALSATVSNAEEFGDWMQ 174
Query: 326 QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
+ G T +I RPVPL + T L L D + K + ++ ++ K
Sbjct: 175 TVRGDTTVIVDDHRPVPLQQHMMVGTRLFDLFDPREKRSGKGGKAKNPGVNPELIRFIK- 233
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
R + + G+ + + + R + + +D +LPAI
Sbjct: 234 -------HRALMADDYDERSRGRGRGRPNNRRGTVVPRPNLVRQLD------REGLLPAI 280
Query: 446 WFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRI-LYPDAVREPAI----KGL 498
FIF+R GCD A+ NLLD + ++V+ + R+ L P + + GL
Sbjct: 281 GFIFSRAGCDGALHQCLRSGINLLDGQQSAQVDDVVDRYVAELSPADIDILGVAEWRTGL 340
Query: 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G AAHHAG LP ++ +EELF GLV++VFATETLA GINMPAR+ VL L K
Sbjct: 341 RRGFAAHHAGLLPTFRHCVEELFTLGLVRMVFATETLALGINMPARSVVLERLVKYNGEA 400
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 590
+ LT E Q+ GRAGRRGID GH V++ T
Sbjct: 401 HVDLTPGEFTQLTGRAGRRGIDVEGHAVVLWT 432
>gi|328784274|ref|XP_397131.4| PREDICTED: helicase SKI2W [Apis mellifera]
Length = 1225
Score = 289 bits (740), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 200/566 (35%), Positives = 296/566 (52%), Gaps = 77/566 (13%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ ELA + + +D FQ+ +I G +V V+A TS+GKT +AE A + + ++ YT
Sbjct: 276 IPELAMSFPYELDIFQKQAILKLEEGCNVFVAAHTSAGKTTVAEYAIALSQKHMTKVIYT 335
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQK+RE + F +VGLLTGD IN A LI+TTEIL++MLY +
Sbjct: 336 SPIKALSNQKYRELKRKF--ESVGLLTGDLQINPNASCLIITTEILQSMLY------CAS 387
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L D++ ++ DEVHY+++ RG VWEE +I P+ V I+ LSATV N A W+G+
Sbjct: 388 EVLRDLEFVIFDEVHYINNDERGHVWEESVILLPQTVTIVMLSATVPNPLVFADWVGRTK 447
Query: 329 GK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
K T +I++ +RPVPL Y T T GK + K +L L S + DG
Sbjct: 448 KKKTYVISTLKRPVPLQHYLYTGT--------DGKTKDDK----FLVLGESG-QFLLDGW 494
Query: 388 SRRRNSRKHADMNSNNI--VTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----HLRSRD 440
+ NS+ + + NI V HQ P+ LW HL++++
Sbjct: 495 YKATNSKNSKNQVNKNIKDVKKISIHQ-----------QMTPKQEQVLWSAFISHLKTQN 543
Query: 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG--- 497
MLP + F+ +R+ CD + L + +L E E + R + + +R +KG
Sbjct: 544 MLPVVVFMLSRKRCDMSAVLLRNVDLTTETEKHTI-------RAFFQNNIRH--LKGTDR 594
Query: 498 -----------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
L G+ HH+G LPI K +E LFQ G+VK++FATET A G+NMPART
Sbjct: 595 QLPQVLMMQELLESGIGIHHSGILPILKEIVEMLFQTGVVKLLFATETFAMGVNMPARTV 654
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAG 605
V S+ K + L +E QMAGRAGRRG D G V+++ +T E ++
Sbjct: 655 VFDSIKKYDGNNFRILYPSEYVQMAGRAGRRGHDTTGMVIIMCRTSVPHFNELKNMMCGQ 714
Query: 606 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665
+ L S+F +Y MVLNL NES ++A+ RS +E+ ++ Q+ NY
Sbjct: 715 AQNLESKFKVTYSMVLNL-------RRLNESVTVEAMMR-RSFKESPVVINQN--NYKMQ 764
Query: 666 NVMLAAKDELCKIQKETDVLTSEISD 691
+ ++EL K+ TD L ++SD
Sbjct: 765 --LQEVENELSKLPPLTD-LQKKLSD 787
>gi|6522577|emb|CAB61942.1| putative helicase [Arabidopsis thaliana]
Length = 1347
Score = 289 bits (739), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 182/502 (36%), Positives = 269/502 (53%), Gaps = 39/502 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V ++A + F +D FQ+ +I +G SV V+A TS+GKT++AE A + R YT
Sbjct: 341 VPDMAIEFPFELDNFQKEAICCLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 400
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
P+K +SNQK+R+F F +VGLLTGD +I EA LIMTTEILR+MLY+ ++
Sbjct: 401 APIKTISNQKYRDFCGKF---DVGLLTGDVSIRPEASCLIMTTEILRSMLYRGADIIR-- 455
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D+ RG VWEE+II P+ + + LSATV N E A WIG+
Sbjct: 456 ----DIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTFEFADWIGRTK 511
Query: 329 GKTELIT-SSRRPVPLTWYFSTKTALLPLLDEK---------GKHMNRKLSLNYLQLSTS 378
K +T +++RPVPL L + + + K +K + N + ++
Sbjct: 512 QKEIRVTGTTKRPVPLEHCLFYSGELYKVCENEVFLSKGIKDAKDSQKKKNSNAVSVAPK 571
Query: 379 E---VKPYKDGG-SRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN--AIRRSQVPQVIDT 432
+ ++DG S++ + N ++ V G+ S NS N A RRS +
Sbjct: 572 QQMGSSAHQDGSKSQKHEAHSRGKQNKHSSVKDVGKSSYSGNSQNNGAFRRSAASNWLLL 631
Query: 433 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRIL------ 485
+ L +LP + F F++ CD L +L E SE+ + K F L
Sbjct: 632 INKLSKMSLLPVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRN 691
Query: 486 YPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 545
P +R ++ L +G+ HHAG LPI K +E LF RG++KV+F+TET A G+N PART
Sbjct: 692 LPQVLRLQSL--LHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPART 749
Query: 546 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLL 602
V +L K QL E QMAGRAGRRG+D G VV++ + P E + +++
Sbjct: 750 VVFDALRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDEVPDES--DLRRVI 807
Query: 603 FAGVEPLVSQFTASYGMVLNLL 624
L SQF +Y M+L+LL
Sbjct: 808 VGSATRLESQFRLTYIMILHLL 829
>gi|380494794|emb|CCF32889.1| DSHCT domain-containing protein [Colletotrichum higginsianum]
Length = 1282
Score = 289 bits (739), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 187/515 (36%), Positives = 269/515 (52%), Gaps = 51/515 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V ++A + F +D FQ+ +I G SV V+A TS+GKT++AE A + + YT
Sbjct: 304 VPDMARDWPFELDTFQKEAIYHLESGDSVFVAAHTSAGKTVVAEYAIALASKHMTKAIYT 363
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR+TF + VG+LTGD IN EA LIMTTEILR+MLY+ ++
Sbjct: 364 SPIKALSNQKFRDFRQTF--DEVGILTGDVQINPEASCLIMTTEILRSMLYRGADLIR-- 419
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D RG VWEE+II P+ V +I LSATV N E A W+G+
Sbjct: 420 ----DVEFVIFDEVHYVNDFERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWVGRTK 475
Query: 329 GK-TELITSSRRPVPLTWYFSTKTALLPLLD------EKG-KHMNRKL-SLNYLQLSTSE 379
K +I++ +RP+PL Y + ++D EKG K N+ + + +++ S
Sbjct: 476 QKDIYVISTPKRPIPLEHYLWAGKNIHKIVDSDKKFIEKGWKEANQAIQGKDKMKIPESS 535
Query: 380 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI--------- 430
P GG +R + + G + A R S P +
Sbjct: 536 NAPR--GGGGQRGAPRGGIQRGGQRGGQRGGGSQQRGRGGAPRASHNPGHMGRIGRQGGF 593
Query: 431 ------DTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL 479
LW L+ ++LP+ F+F+++ C+ L + + E S + + +
Sbjct: 594 TSAAQDKNLWVHLVQFLKKDNLLPSCIFVFSKKRCEENADALSNQDFCTANEKSAIHMTI 653
Query: 480 -KRFRILYPDAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 534
K L P+ P I + L +G+A HH G LPI K +E LF + LVKV+FATET
Sbjct: 654 EKSIARLKPEDRTLPQIIRLRELLSRGIAVHHGGLLPIVKEIVEILFAQTLVKVLFATET 713
Query: 535 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 594
A G+N+P RT V S K L E QMAGRAGRRG+D G V++V P G
Sbjct: 714 FAMGLNLPTRTVVFSGYRKHDGHSFRNLLPGEYTQMAGRAGRRGLDTVGSVIIV--PPGG 771
Query: 595 AE-----ECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E + K++ L SQF +Y M+LNLL
Sbjct: 772 DEAPPVADLQKMILGEPSKLRSQFRLTYNMILNLL 806
>gi|255949946|ref|XP_002565740.1| Pc22g18350 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592757|emb|CAP99123.1| Pc22g18350 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1078
Score = 289 bits (739), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 173/481 (35%), Positives = 265/481 (55%), Gaps = 37/481 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F +D FQ+ ++ + R SV+VSA TS+GKT++AE A ++ +R+ YT+P+K
Sbjct: 150 AKTWPFTLDPFQQVAVSSIQREESVLVSAHTSAGKTVVAEYAIAQSLKQNQRVIYTSPIK 209
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 210 ALSNQKYREFAAEFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR------ 261
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
+V +V DE+HY+ D++RG VWEE II P +V+ + LSAT+ NA + A WI ++H +
Sbjct: 262 EVQWVVFDEIHYMRDVNRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWIVKMHDQPC 321
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ ++ RP PL YF + + ++DEKG ++ + D ++
Sbjct: 322 HVVYTNYRPTPLQNYFFPAGGEGIHLVVDEKGVFREENFQKAMSAIADKKGDDPADALAK 381
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R+ K +N I + I I R + ++ P I F F
Sbjct: 382 RKGKGKDKQINKGGI--------KGPSDIYKIVR-----------MIMLKNYNPVIVFSF 422
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAA 504
++R C+A + D+ E + V + +L P+ + P I+ +L +G+
Sbjct: 423 SKRECEAGALQMSKLTFNDDSEKNMVSKVFESAIEMLSPEDRQLPQIQNILPLLQQGIGV 482
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K + + +T
Sbjct: 483 HHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGTSQRWVTP 542
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNL 623
+E QM+GRAGRRG+D+RG +V++ E K + G + L S F Y M+LNL
Sbjct: 543 SEFIQMSGRAGRRGLDDRG-IVIMMVGEEMDPAVAKEIVRGEQDRLNSAFHLGYNMILNL 601
Query: 624 L 624
+
Sbjct: 602 M 602
>gi|340713859|ref|XP_003395452.1| PREDICTED: helicase SKI2W-like [Bombus terrestris]
Length = 1232
Score = 288 bits (738), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 213/656 (32%), Positives = 326/656 (49%), Gaps = 100/656 (15%)
Query: 72 EAADEYD---DDIDD--DDDEEAADEYDDVSGEVSDEIQQSDDEFEVSS-DSSPAPSWRE 125
E DE+D +I + + EE + D+ DEI +E ++ + S P
Sbjct: 201 EEQDEFDFWKSEIKEIKETKEETKIKTSDIEQAAFDEIASFLEEADIPILNISKIPVETA 260
Query: 126 EFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSS 185
+ KW + + +F + ELA + + +D FQ+ +I G +V V+A TS+
Sbjct: 261 KSKWAEQIDVSVPITDFEKR---IPELAMSFPYELDTFQKQAILKLEEGCNVFVAAHTSA 317
Query: 186 GKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQ 245
GKT +AE A + + ++ YT+P+KALSNQK+R+ + F ++VGLLTGD IN A
Sbjct: 318 GKTTVAEYAIALSQKHMTKVIYTSPIKALSNQKYRDLKRKF--DSVGLLTGDLQINPNAS 375
Query: 246 ILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEV 305
LI+TTEIL++MLY + L D++ ++ DEVHY+++ RG VWEE +I P+ V
Sbjct: 376 CLIITTEILQSMLY------CASEILRDLEFVIFDEVHYINNDERGHVWEESVILLPQTV 429
Query: 306 QIICLSATVANADELAGWIGQI-HGKTELITSSRRPVPLTWYF------STKTALLPLLD 358
++ LSATV N A W+G+ KT +I++ +RPVPL Y TK +LD
Sbjct: 430 TLVMLSATVPNPLIFADWVGRTKKKKTYVISTLKRPVPLQHYLYTGTDGKTKDNKFLVLD 489
Query: 359 EKGKHMNRKLSLNYLQLSTSEVKPYKDG---GSRRRNSRKHADMNSNNIVTSFGQHQLSK 415
E G + DG + +N + ++ N+ ++ Q Q++
Sbjct: 490 ESGHFL-------------------LDGWYKATTTQNPKNQSNKNAKDVKRKPMQRQMT- 529
Query: 416 NSINAIRRSQVPQVIDTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDEC 470
P+ LW HLR+++MLP + F+ +R+ CD + L + +L E
Sbjct: 530 -----------PKQEQVLWNAFISHLRTQNMLPVVVFMLSRKRCDMSAVLLRNVDLTTET 578
Query: 471 EMSEVELALKRFRILYPDAVREPAIKG--------------LLKGVAAHHAGCLPIWKSF 516
E + R + + +R +KG L G+ HH+G LPI K
Sbjct: 579 EKHTI-------RTFFQNNIRH--LKGTDRQLPQVLMMRELLESGIGIHHSGILPILKEI 629
Query: 517 IEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGR 576
+E LFQ G+VK++FATET A G+NMPART V S+ K + L +E QMAGRAGR
Sbjct: 630 VEMLFQTGVVKLLFATETFAMGVNMPARTVVFDSIKKYDGTNFRILYPSEYVQMAGRAGR 689
Query: 577 RGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNE 635
RG D G V V+ QT E ++ + L S+F +Y MVLNL NE
Sbjct: 690 RGHDTAGMVIVMCQTLVPHFNELQNMMCGQAQNLESKFKVTYSMVLNL-------RRLNE 742
Query: 636 SDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISD 691
S ++A+ RS +E+ ++ Q+ NY + ++EL K+ TD L +SD
Sbjct: 743 SVTVEAMMR-RSFKESPVVINQN--NYKIQ--LQRLENELSKLPPLTD-LQKNLSD 792
>gi|358378415|gb|EHK16097.1| hypothetical protein TRIVIDRAFT_39829 [Trichoderma virens Gv29-8]
Length = 1037
Score = 288 bits (738), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 218/647 (33%), Positives = 323/647 (49%), Gaps = 74/647 (11%)
Query: 70 ADEAADEYDDDIDDDDDEEAADEYD-------DVSGEVSDEIQQSDDEFEV-------SS 115
AD A D+D + +DD + ++ D D +G V + Q+ + EV S
Sbjct: 2 ADAADASRDEDSEGEDDSDTPEQQDKKRRKKADGAGPVMTDNFQTAESREVAGASTFVSQ 61
Query: 116 DSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGS 175
DSS S + + L E +E +E A Y F++D FQ S+ + R
Sbjct: 62 DSSLVLSHNIQHQVALPPDLNYEYIPL-SEHKSPEEPARTYPFKLDPFQSLSVASIEREE 120
Query: 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLT 235
SV+VSA TS+GKT++AE A + +R+ YT+P+KALSNQK+R+F FGD VGL+T
Sbjct: 121 SVLVSAHTSAGKTVVAEYAVAQCLKRNQRVIYTSPIKALSNQKYRDFEAIFGD--VGLMT 178
Query: 236 GDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWE 295
GD IN A L+MTTEILR+MLY+ ++ +V +V DEVHY+ D +RG VWE
Sbjct: 179 GDVTINPTASCLVMTTEILRSMLYRGSEIMR------EVAWVVFDEVHYMRDKTRGVVWE 232
Query: 296 EIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYF---STKT 351
E II P +V+ + LSAT+ NA + A WI +IH + ++ + RP PL YF K
Sbjct: 233 ETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFYPAGGKG 292
Query: 352 ALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQH 411
A + ++DEKG + + +EV+ +K AD
Sbjct: 293 ARM-VVDEKGN-----FNAENFNIVMAEVE-----------EKKGADPADPTAKMKGKGK 335
Query: 412 QLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECE 471
N A S + ++I ++ P I F F++R C+ + + N D+ E
Sbjct: 336 NKKTNKGGADEGSDINKIIRMTI---KKNYNPVIVFNFSKRECENMALKISNLNFNDDSE 392
Query: 472 MSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLV 526
+ V + + RE P I LL KGV HH+G LPI K IE LFQ L+
Sbjct: 393 KAMVNKVFRSAIDSLSEQDRELPQIMNLLPLLEKGVGVHHSGLLPILKETIEILFQESLI 452
Query: 527 KVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVV 586
KV+FATET + G+NMPA+T V + ++K R +TS+E QMAGRAGRRG+D RG V+
Sbjct: 453 KVLFATETFSIGLNMPAKTVVFTQVTKWDGIKRRPITSSEYIQMAGRAGRRGLDARGIVI 512
Query: 587 LVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGR 646
++ E ++ + L S F Y M+LNLL ++ +S E
Sbjct: 513 MMIDDKLEPEVAKDIVTGHQDKLNSAFYLGYNMILNLL---RIEAISPEF---------- 559
Query: 647 SLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDA 693
++E+ F + + + + + +L +Q+E D LT I D+A
Sbjct: 560 -------MLERCFHQFQNAASVPSLEKDLMALQQEKDALT--IPDEA 597
>gi|402219586|gb|EJT99659.1| antiviral helicase [Dacryopinax sp. DJM-731 SS1]
Length = 1000
Score = 288 bits (738), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 183/483 (37%), Positives = 262/483 (54%), Gaps = 45/483 (9%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
Y F +D FQ+ S+ A R SV+VSA TS+GKT++AE A + +++R+ YT+P+KALS
Sbjct: 67 YKFVLDPFQKVSVHAIERNESVLVSAHTSAGKTVVAEYAIAQCLRDKQRVIYTSPIKALS 126
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+R+F E FGD VGL+TGD IN A L+MTTEILR+MLY+ +V +V
Sbjct: 127 NQKYRDFAEVFGD--VGLMTGDVTINPSATCLVMTTEILRSMLYRGSEIVR------EVA 178
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
++ DE+HY+ D RG VWEE II P +V + LSAT+ NA E A WI ++H + ++
Sbjct: 179 WVIFDEIHYMRDKERGVVWEETIILLPHKVHFVFLSATIPNALEFAQWISKLHNQPCHVV 238
Query: 335 TSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD---GGSR 389
+ RP PL Y + + +++EK + ++ ++ D G R
Sbjct: 239 YTDFRPTPLQHYLYPAGSNGIFLVVNEKSEFKEDNFQRAMAAIADAKGDDPSDPNAGSGR 298
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
+ S+K D G S++ I+ + + + + P I F F
Sbjct: 299 KGKSKKGVDR---------GMCYSSQSDIHKLVK-----------MISQKGYGPVIVFSF 338
Query: 450 NRRGCDAAVQYLE--DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVA 503
N+R C+A + D N DE M E E+ K L + + P I+ LL +G+
Sbjct: 339 NKRECEALAMAISKLDFNTDDEANMVE-EVYKKAINALTEEDRKLPQIQHLLPLLKRGIG 397
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH G LPI K +E LFQ L+KV+FATET + G+NMPART V +++ K L+
Sbjct: 398 VHHGGLLPILKEVVEVLFQEALIKVLFATETFSIGLNMPARTVVFTTVRKYDGREFRSLS 457
Query: 564 SNELFQMAGRAGRRGIDNRGHVV-LVQTPYEGAEECCKLLFAG-VEPLVSQFTASYGMVL 621
S E QM+GRAGRRG+D+RG VV +V E A K + G + L S F Y MVL
Sbjct: 458 SGEYIQMSGRAGRRGLDDRGIVVMMVDEKLEPA--VAKNMVKGEADRLNSAFHLGYNMVL 515
Query: 622 NLL 624
NL+
Sbjct: 516 NLM 518
>gi|242017221|ref|XP_002429090.1| Helicase, putative [Pediculus humanus corporis]
gi|212513954|gb|EEB16352.1| Helicase, putative [Pediculus humanus corporis]
Length = 1184
Score = 288 bits (738), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 192/560 (34%), Positives = 286/560 (51%), Gaps = 44/560 (7%)
Query: 72 EAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAPSWREEFKWQR 131
E +E D + +D EE + E DV + +E+ +S D +P +W
Sbjct: 156 ELENEEDKHENKNDTEEISVEESDVISSIPNEVAFKAPVIRLS-DVTPLKGVTST-EWAE 213
Query: 132 VEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIA 191
V + V +F ++ D +A Y+F +D FQ+ +I SV+V+A TS+GKT+IA
Sbjct: 214 VIDVSLPVTDFYEKIPD---MAFKYNFELDTFQKQAILKLEEHCSVLVAAHTSAGKTVIA 270
Query: 192 EAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTT 251
E A + + R YT+P+KALSNQK+R+FR TF D VGL+TGD +N+ LIMTT
Sbjct: 271 EYAIALSQRHMTRTIYTSPIKALSNQKYRDFRNTFKD--VGLITGDFQVNQTGTCLIMTT 328
Query: 252 EILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311
EIL++ML ++ D++ ++ DEVHY++D RG VWEE++I P V I+ LS
Sbjct: 329 EILKSMLLAQNDIIR------DLEYVIFDEVHYINDFKRGHVWEEVVILLPSHVSIVMLS 382
Query: 312 ATVANADELAGWIGQI-HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 370
ATV N + A W+G+ K +I++++RPVPL + T G N K
Sbjct: 383 ATVPNTLQFADWVGRTKQQKMYVISTTQRPVPLEHFLYT-----------GSGGNSKDER 431
Query: 371 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 430
+ +T+E + K G ++K + N+V Q R+ +
Sbjct: 432 FLILSATNEFQ--KKGYLEAVEAKKKRESKQKNVVKERPQ---------TGRKQDTTMWV 480
Query: 431 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF--RILYPD 488
+ HL+ D LP + FI +++ CD L +L E S V ++ ++ PD
Sbjct: 481 ALIEHLQKHDKLPIVAFILSQKRCDENASSLMSVDLTTAKEKSHVRHFFQQSIQKLKEPD 540
Query: 489 AVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 544
P I K L G+ HH G LPI K +E LFQ VK++FATET A G+NMPA+
Sbjct: 541 QTL-PQILKMQKLLENGIGIHHKGILPILKEIVEMLFQERCVKILFATETFAMGVNMPAK 599
Query: 545 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 604
T V S+ K S + L +E QMAGRAGRRG+D G V+++ E L
Sbjct: 600 TVVFDSIHKYDGSEKRMLLPSEYIQMAGRAGRRGLDKTGTVIIICREDMPTENNLIQLMK 659
Query: 605 GV-EPLVSQFTASYGMVLNL 623
G+ + + SQF +Y ++L L
Sbjct: 660 GIPKKIESQFRLTYSVILKL 679
>gi|261332826|emb|CBH15821.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
gambiense DAL972]
Length = 950
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 186/481 (38%), Positives = 259/481 (53%), Gaps = 36/481 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + + +D FQR SI A G SV+VSA TS+GKT +A A V ++R+ YT+P+K
Sbjct: 23 AMTFPYELDAFQRDSINALENGDSVLVSAHTSAGKTTVALYAIAKAVREKKRVIYTSPIK 82
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFREF + F ++VGL+TGD+ I ++ L+MTTEILR+MLY+ M L
Sbjct: 83 ALSNQKFREFTDKF--DSVGLMTGDTTIKVDSDCLVMTTEILRSMLYRGTEM------LR 134
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH--GK 330
+V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH K
Sbjct: 135 EVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFAEWVESIHPGTK 194
Query: 331 TELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
+I + RPVPL Y A + ++DE GK + + + + V GG
Sbjct: 195 VHVIHTDYRPVPLHHYVYPCGADGIFLIVDELGKFRE-----DNFRRAMASVGAGNKGGD 249
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
N S S+ ++R+S P +++ + + +R+M P I F
Sbjct: 250 -------------ANGAESTEVAAASRGKQRSMRKSTEP-IMEIIKLVMNRNMYPIIVFS 295
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KGVA 503
F + C+ L N + E + V E+ L + + PAI+ LL +GV
Sbjct: 296 FAKAECERNALALSKLNFNNTEEDALVTEVFNNAMECLATEDRKLPAIEHLLPLLKRGVG 355
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K LT
Sbjct: 356 IHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGETNRYLT 415
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E QM+GRAGRRG+D G V+ + E ++ G + L S F +Y MVLNL
Sbjct: 416 GGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPEILKQVTGGGADVLNSSFHLTYNMVLNL 475
Query: 624 L 624
L
Sbjct: 476 L 476
>gi|320593806|gb|EFX06209.1| ATP-dependent RNA helicase dob1 [Grosmannia clavigera kw1407]
Length = 1133
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 180/484 (37%), Positives = 264/484 (54%), Gaps = 37/484 (7%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A +Y F +D FQ SI + R SV+VSA TS+GKT++AE A +R+ YT+P
Sbjct: 159 EPARVYPFPLDPFQSLSIASIEREESVLVSAHTSAGKTVVAEYAIAQCFKRNQRVIYTSP 218
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQKFR+F+ FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 219 IKALSNQKFRDFQAEFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR---- 272
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V +V DE+HYL D SRG VWEE II P +V + LSAT+ NA + A WI +IH +
Sbjct: 273 --EVAWVVFDEIHYLRDKSRGVVWEETIILLPDKVHYVFLSATIPNAFQFAEWIAKIHRQ 330
Query: 331 T-ELITSSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKD 385
++ + RP PL Y + +L ++DE+G K N +++ ++
Sbjct: 331 ACHVVYTDFRPTPLQNYCFPAGGNGILLVVDERGVFKEKNFNMAMALVE----------- 379
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
+ AD+N+ + G+++ + + + + + ++ P I
Sbjct: 380 ----QNKGADPADINAK--MKGHGKNKKTNKGGGSGGNESSSDIYKIIRMIMKKNFHPVI 433
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----K 500
F F++R C+ + N +E E + V + +A RE I LL K
Sbjct: 434 VFNFSKRECEMLALKISGMNFNNESEQALVTRVFENAIDTLSEADRELSQITHLLPLLRK 493
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+ HH+G LPI K +E LFQ L+KV+FATET + G+NMPART V +++ K
Sbjct: 494 GIGVHHSGLLPILKEIVEILFQENLIKVLFATETFSIGLNMPARTVVFTTVRKFDGVSMR 553
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGM 619
LTS+E QM+GRAGRRG+D+RG +V++ + E K + AG + L S F Y M
Sbjct: 554 PLTSSEYVQMSGRAGRRGLDDRG-IVIMMLDDKLEPETAKAIVAGKQDRLNSAFHLGYNM 612
Query: 620 VLNL 623
+LNL
Sbjct: 613 ILNL 616
>gi|68531943|ref|XP_723656.1| antiviral protein ski2 [Plasmodium yoelii yoelii 17XNL]
gi|23478020|gb|EAA15221.1| antiviral protein ski2 [Plasmodium yoelii yoelii]
Length = 1358
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 182/533 (34%), Positives = 283/533 (53%), Gaps = 55/533 (10%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
Y+F +D FQ+ S++ V V+A TS+GKTLIAE A ++ ++ YT+P+KALS
Sbjct: 301 YNFELDDFQKRSVKHINNFKHVFVAAHTSAGKTLIAEHAIALSIKLNKKAIYTSPIKALS 360
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+ EF+ F NVG++TGD +N A LIMTTEILRN+LY + +++ ++
Sbjct: 361 NQKYYEFKNIFK--NVGIITGDVKMNVNANCLIMTTEILRNLLYLNDNIIN------NIH 412
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL-I 334
++ DEVHY++D RG +WEE II P VQI+ LSATV N + A W+G K + I
Sbjct: 413 CVIFDEVHYVNDEFRGVIWEESIIMLPPHVQIVLLSATVPNYLQFADWVGFTKQKEVIAI 472
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK--------DG 386
++ +RPVPL Y +L ++DEK K + Y+++ E K G
Sbjct: 473 STKKRPVPLLHYIYAHDSLFLIMDEKNKFYSSAFKEIYIKIREKEEAGKKGKELMGSSHG 532
Query: 387 GSRR------RNSR--------KHADMNS-----NNIVTSFGQH-------QLSKNSINA 420
G ++ +N++ K N+ N+ V + Q+ ++ +N N
Sbjct: 533 GKKKMYYSDPKNNKDNQMEKQNKTGTTNNLGDKQNDTVKGYYQYCKQKQKQRMFQNEANM 592
Query: 421 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK 480
++++ ++ + L + LP + F F+R C+ + + N LD + S+V L +K
Sbjct: 593 --KTEIQKLQALIKKLDEDNKLPVVLFCFSRIKCETYAKSMPHLNFLDNKKKSKVHLFIK 650
Query: 481 RFRILYPDAVRE-PAIKGLLK----GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 535
D RE IK L K G+ HH+G LPI K +E LF +GL+KV+FATET
Sbjct: 651 ESASKLCDQDRELNQIKILSKLLENGIGVHHSGLLPILKEIVEILFSKGLIKVLFATETF 710
Query: 536 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEG 594
A GINMPA++ + +S+ K + LTS+E QM+GRAGRR D+ G+V +
Sbjct: 711 AMGINMPAKSVIFTSIYKHDHLKKRILTSSEYTQMSGRAGRRSSDSYGYVYIYCSDNIPD 770
Query: 595 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV----MHLSNESDDMKALQ 643
+ +++ L S+F +Y M+L LL ++ M S+ + +ALQ
Sbjct: 771 QVQLTEMMMQKAVSLKSKFKVTYNMILKLLINKQINIEKMLFSSFLESCRALQ 823
>gi|71747848|ref|XP_822979.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70832647|gb|EAN78151.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 950
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 186/481 (38%), Positives = 259/481 (53%), Gaps = 36/481 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + + +D FQR SI A G SV+VSA TS+GKT +A A V ++R+ YT+P+K
Sbjct: 23 AMTFPYELDAFQRDSINALENGDSVLVSAHTSAGKTTVALYAIAKAVREKKRVIYTSPIK 82
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFREF + F ++VGL+TGD+ I ++ L+MTTEILR+MLY+ M L
Sbjct: 83 ALSNQKFREFTDKF--DSVGLMTGDTTIKVDSDCLVMTTEILRSMLYRGTEM------LR 134
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH--GK 330
+V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH K
Sbjct: 135 EVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFAEWVESIHPGTK 194
Query: 331 TELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
+I + RPVPL Y A + ++DE GK + + + + V GG
Sbjct: 195 VHVIHTDYRPVPLHHYVYPCGADGIFLIVDELGKFRE-----DNFRRAMASVGAGNKGGD 249
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
N S S+ ++R+S P +++ + + +R+M P I F
Sbjct: 250 -------------ANGAESTEVAAASRGKQRSMRKSTEP-IMEIIKLVMNRNMYPIIVFS 295
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KGVA 503
F + C+ L N + E + V E+ L + + PAI+ LL +GV
Sbjct: 296 FAKAECERNALALSKLNFNNTEEDALVTEVFNNAMECLATEDRKLPAIEHLLPLLKRGVG 355
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K LT
Sbjct: 356 IHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGETNRYLT 415
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E QM+GRAGRRG+D G V+ + E ++ G + L S F +Y MVLNL
Sbjct: 416 GGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPEILKQVTGGGADVLNSSFHLTYNMVLNL 475
Query: 624 L 624
L
Sbjct: 476 L 476
>gi|290984980|ref|XP_002675204.1| predicted protein [Naegleria gruberi]
gi|284088799|gb|EFC42460.1| predicted protein [Naegleria gruberi]
Length = 843
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 178/484 (36%), Positives = 259/484 (53%), Gaps = 59/484 (12%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
+A Y F +D FQ+ ++ SV VSA TS+GKT++AE A + R+ YT+P+
Sbjct: 1 MAIQYPFDLDIFQKEAVYHLENNESVFVSAHTSAGKTVVAEYAIALAQKHLTRVIYTSPI 60
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
K LSNQKFREF++TFGD VG+LTGD IN A LIMTTEILR+MLY+ ++
Sbjct: 61 KTLSNQKFREFKKTFGD--VGILTGDVQINPTATCLIMTTEILRSMLYKGADLIR----- 113
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGK 330
DV+ ++ DEVHY++D RG VWEE+II PK + +I LSAT+ N + A W+G+ K
Sbjct: 114 -DVEWVIFDEVHYVNDPERGVVWEEVIIMLPKHINLILLSATIPNTYDFADWVGRTKKKK 172
Query: 331 TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
+I + +RPVPL + + ++D K + G R
Sbjct: 173 IHVIQTFKRPVPLEHHLYYNGNIYKIVDSNSKFLA--------------------AGYRS 212
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
S + N S +++ ++I+T L +++LPA+ F+F+
Sbjct: 213 ALSAEEEKEEKN-------------KSRGGFKKTPYSKLIET---LNKKNLLPAVTFVFS 256
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEVEL-------ALKRFRILYPDAVREPAIKGLLK-GV 502
R+ C+ L++ +L + E +E+ LK P VR I LLK G+
Sbjct: 257 RKQCEDIAISLQNTDLNEAGEKNEIHRFINQSVSRLKGSDKELPQIVR---ISDLLKRGI 313
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH+G LPI K +E LF +GL+KV+FATET A G+N P +T V ++L K + L
Sbjct: 314 GIHHSGLLPIVKEIVEILFSKGLIKVLFATETFAMGVNSPTKTVVFNTLWKFDGRDKRDL 373
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC--KLLFAGVEPLVSQFTASYGMV 620
S E QM+GRAGRRG+D G+V+ + E EE +L+ L S+F SY M+
Sbjct: 374 LSGEYIQMSGRAGRRGLDTVGNVI-INCASEIPEEPLLQRLILGKATHLESKFKLSYNMI 432
Query: 621 LNLL 624
LNL+
Sbjct: 433 LNLM 436
>gi|400600826|gb|EJP68494.1| DSHCT domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 1098
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 199/595 (33%), Positives = 305/595 (51%), Gaps = 72/595 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A Y F++D FQ S+ + R SV+VSA TS+GKT++AE A + +R+ YT+P
Sbjct: 156 EPARTYPFKLDPFQSLSVASIERDESVLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTSP 215
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+R+F FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 216 IKALSNQKYRDFEALFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR---- 269
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH +
Sbjct: 270 --EVAWVVFDEIHYMRDKTRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHHQ 327
Query: 331 T-ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL YF + + ++DEKG + + + EV+
Sbjct: 328 ACHVVYTDFRPTPLQNYFYPAGGSGARIVVDEKGN-----FNEDNFNIVMKEVE------ 376
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+K AD N N T+ + A S + ++I + P I F
Sbjct: 377 -----DKKGADSNDINAKTTGKGKNKKTHKGGADEGSDMSKIIRMTIR---KSFNPVIVF 428
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGV 502
F++R C+ + +L D+ E + V + + R+ P IK LL +G+
Sbjct: 429 NFSKRECENMAISISKLSLNDDSEKAMVNKVFQSAIESLSEQDRDLPQIKNLLPLLVRGI 488
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH+G LPI K IE LFQ L+KV+FATET + G+NMPA+T V + ++K R L
Sbjct: 489 GVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVQRRPL 548
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
TS+E QMAGRAGRRG+D RG V+++ + +++ + L S F Y M+LN
Sbjct: 549 TSSEYVQMAGRAGRRGLDARGIVIMMIDDKLEPDTAKQIVTGQQDRLNSAFYLGYNMILN 608
Query: 623 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKET 682
LL ++ +S E ++E+ F + + + + EL IQ+E
Sbjct: 609 LL---RIEAISPEF-----------------MLERCFHQFQNAASVPTLERELMAIQQER 648
Query: 683 DVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFS 737
D T + EA K+ ++++L A + ++R ++L +S
Sbjct: 649 DGAT--------------IPDEATIKDYYQIRQQLNA---YTKDMRSVIQLPNYS 686
>gi|328700737|ref|XP_001948018.2| PREDICTED: helicase SKI2W-like [Acyrthosiphon pisum]
Length = 1181
Score = 288 bits (736), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 181/484 (37%), Positives = 266/484 (54%), Gaps = 53/484 (10%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
++F +D FQ+ ++ SSV V+A TS+GKT+IAE A +Q R YT+P+KALS
Sbjct: 241 WEFELDTFQKQAVLKLEEKSSVFVAAHTSAGKTVIAEYAIALAKKHQLRCIYTSPIKALS 300
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQKFR+F++ FGD VGL+TGD + EAQ LI+TTEIL +MLY S + + +
Sbjct: 301 NQKFRDFKKKFGD--VGLITGDFQVKPEAQCLIVTTEILCSMLY------SDSDKIKETE 352
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH-GKTELI 334
++LDEVHY++D RG +WE+I+I PK V+++ LSATV N + A WIG+ K ++
Sbjct: 353 FVILDEVHYVNDRDRGHIWEQILIMLPKRVKLVMLSATVTNVIDFANWIGRTRDSKIYVV 412
Query: 335 TSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 393
+ RPVPL Y + + + D H+ RK D G +
Sbjct: 413 FTLYRPVPLEHYLYIGSNTSMEMKD--NMHLIRK----------------ADSGFLIQGY 454
Query: 394 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453
RK AD+ N ++Q SKN + Q P+ ++ L L ++ P + FI +R+
Sbjct: 455 RKAADLLKKN--KEVKKYQESKNF-----KDQKPKWVNFLRFLDKNNLFPVVVFILSRKK 507
Query: 454 CDAAVQYLED-CNLL---DECEMSEVEL--ALKRFRILYPDAVREPAI----KGLLKGVA 503
CD + L++ N L E + +E A+K+ + P+ P + + L +G+A
Sbjct: 508 CDMMAESLKNSVNFLLNNKESQANEYFFNDAIKKLK---PEDRALPQVVLMKELLCQGIA 564
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K +E FQ+ LVK +FATET A GINMPART V +++K + L
Sbjct: 565 VHHSGILPILKEIVEMQFQKSLVKCLFATETFAIGINMPARTVVFEAINKFDGIEKRNLA 624
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
E QMAGRAGRRG D+ G V+++ Q P + E ++ L SQF SY ++
Sbjct: 625 PAEYTQMAGRAGRRGHDDSGTVIIMANDQLPND--RELTNMMLGKSAKLESQFKVSYSII 682
Query: 621 LNLL 624
LN+
Sbjct: 683 LNMF 686
>gi|170034314|ref|XP_001845019.1| antiviral helicase SKI2 [Culex quinquefasciatus]
gi|167875652|gb|EDS39035.1| antiviral helicase SKI2 [Culex quinquefasciatus]
Length = 1216
Score = 288 bits (736), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 185/511 (36%), Positives = 264/511 (51%), Gaps = 53/511 (10%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W + + V +F + + E+A Y F +D FQ+ +I + V V+A TS+GK
Sbjct: 239 EWAEILDVSKPVTDFHTK---IPEMAHRYPFELDIFQKQAIIKLEEHNHVFVAAHTSAGK 295
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A + + + YT+P+KALSNQK+R+F+ TF D VGL+TGD I+ A L
Sbjct: 296 TVVAEYAIALSKKHMTKTIYTSPIKALSNQKYRDFKSTFED--VGLITGDIQIDPTASCL 353
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY + D++ ++ DEVHY++D RG VWEE++I P V I
Sbjct: 354 IMTTEILRSMLYCGSDITR------DLEYVIFDEVHYITDADRGHVWEEVLILLPDHVCI 407
Query: 308 ICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366
+ LSATV N E A W+G+ K ++++ +RPVPL Y T GK
Sbjct: 408 VMLSATVPNTLEFANWVGKTKKKRVHVVSTPKRPVPLKHYLYTGCG--------GK---- 455
Query: 367 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV 426
S + + L E + G R+ A M+ N +KNS + +Q
Sbjct: 456 --SKDDMFLVVDEQSKFLIDGFRKAKEAITARMSKNA----------NKNSGRPAQFNQK 503
Query: 427 PQVIDTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECE----MSEVEL 477
+ TLW L+ D LP + F +R CD L C+L E S +L
Sbjct: 504 QE--QTLWVGLIDQLQKNDKLPVVAFTLSRNRCDNNANALMSCDLTTGREKYLITSFFQL 561
Query: 478 ALKRFRILYPDAVREPAIK---GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 534
L++ + PD + I+ L +G+ HH+G LPI K +E LF RGLVK++FATET
Sbjct: 562 CLQKLK--PPDRMLPQVIQVQNCLQRGIGIHHSGILPILKEIVEMLFARGLVKILFATET 619
Query: 535 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYE 593
A G+NMPART + S K L E QMAGRAGRRG+D G V+++ +
Sbjct: 620 FAMGVNMPARTVIFDSTKKFDGQTSRMLQPAEYTQMAGRAGRRGLDKNGTVIIICKMGVA 679
Query: 594 GAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G E ++ L SQF +Y M+L LL
Sbjct: 680 GESELQNMILGKPMRLESQFRLTYAMILYLL 710
Score = 43.1 bits (100), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 30/220 (13%)
Query: 960 KRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENE 1019
K+L+ + + L ++ S + ++ V+ E + +D QV G A + G+NE
Sbjct: 992 KQLETKLEDLKYQVSYKSMSLYPDYCNKLKVLQELKYIDDMQQVAMK-GRVACEM-GQNE 1049
Query: 1020 LWLA-MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDE 1078
L + +VLRN IL DL+PA++AA+ +SLV + + + EP +I L +
Sbjct: 1050 LMITELVLRN-ILTDLQPAEIAALLSSLVFQ---------SKTEVEP-----KMIETLKK 1094
Query: 1079 HRSSFLE-------LQEKHGVEIPCCLDSQFSGMVEA---WASGLTWREMMMDCALDDGD 1128
R+ F E +++ +GV D G+VE WA + E+M + +G
Sbjct: 1095 ARALFEEVERDIRSVEQMYGVTDLLERDKLNFGLVEVVYEWAQNKPFSEIMDLTDIKEGI 1154
Query: 1129 LARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDASNVMDR 1166
+ R +++ + L + + D L +ASN + R
Sbjct: 1155 IVRCIQQLNETLCNVKDAARIIGDPVLHSKMEEASNAIKR 1194
>gi|157877094|ref|XP_001686879.1| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
gi|68129954|emb|CAJ09262.1| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
Length = 968
Score = 288 bits (736), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 200/557 (35%), Positives = 279/557 (50%), Gaps = 45/557 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + + +D FQ++SI+A G SV+VSA TS+GKT +A A + ++R+ YT+P+K
Sbjct: 35 AITFPYELDTFQKTSIDALEEGDSVLVSAHTSAGKTTVALYAIAKALREKKRVIYTSPIK 94
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFREF E F ++VGL+TGD+ I +A L+MTTEILR+MLY+ M L
Sbjct: 95 ALSNQKFREFSEKF--DSVGLMTGDTTIKADADCLVMTTEILRSMLYRGTEM------LR 146
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH--GK 330
+V +V DEVHY+ D SRG VWEE I P+ Q + LSAT+ NA E A W+ IH K
Sbjct: 147 EVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREFADWVESIHPTTK 206
Query: 331 TELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
+I + RPVPL Y A + ++DEKGK + +
Sbjct: 207 VHVIHTDYRPVPLQHYLYPAGADGIFLIVDEKGKFRDDNFGKAIASMGAEGGANGVGAAG 266
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
S K G H+ + + +++ + R+M P I F
Sbjct: 267 PGNGSSKDPR----------GNHKGGGGRSHGGSSQSMMEIVKLVM---DRNMYPVIVFS 313
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKG----LLKGVA 503
F + C+ L N + E + V E+ L + + PAI+ L +GV
Sbjct: 314 FAKAECERNALALSRLNFNNAEEDALVMEVFNNAMESLAEEDRKLPAIEHLHPLLKRGVG 373
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K +E LFQ GLVKV+F+TET + G+NMPART V +S+ K LT
Sbjct: 374 IHHSGLLPILKEIVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRYLT 433
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E QM+GRAGRRG+D G V+ + +L G + L+S F +Y MVLNL
Sbjct: 434 GGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPNTLKQLTGGGADVLLSSFHLTYNMVLNL 493
Query: 624 LAGAKV-----MHLS----NESDDMKALQAG-----RSLEEARKLVEQSFGNYVGSNVML 669
L V M S D AL+ RS+EE E +F Y M+
Sbjct: 494 LRVEDVDPEFMMKRSFSQFQRLRDKPALEEKGAALRRSIEEINVAHESAFRQYTICEDMI 553
Query: 670 A-AKDELCKIQKETDVL 685
A K+E+ I ++ +L
Sbjct: 554 AKKKNEVSHILRQPKLL 570
>gi|124506747|ref|XP_001351971.1| helicase with Zn-finger motif, putative [Plasmodium falciparum 3D7]
gi|23504999|emb|CAD51782.1| helicase with Zn-finger motif, putative [Plasmodium falciparum 3D7]
Length = 1373
Score = 288 bits (736), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 183/547 (33%), Positives = 279/547 (51%), Gaps = 76/547 (13%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
YDF +D FQ+ SI+ V V+A TS+GKTLIAE A ++ Q++ YT+P+KALS
Sbjct: 298 YDFELDDFQKRSIKHLNNFKHVFVAAHTSAGKTLIAEHAIALSIKLQKKAIYTSPIKALS 357
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+ EF+ F D VG++TGD +N A +IMTTEILRN+LY + +++ ++
Sbjct: 358 NQKYYEFKNIFKD--VGIITGDVKMNVNANCIIMTTEILRNLLYLNDNIIN------NIH 409
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL-I 334
++ DEVHY++D RG +WEE II P VQI+ LSATV N E A W+G K + I
Sbjct: 410 CVIFDEVHYVNDEDRGVIWEESIIMLPHHVQILLLSATVPNYLEFADWVGFTKQKEVISI 469
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD-----GGSR 389
++ +RPVPL Y ++ ++DEK K + Y+++ + K+ GS
Sbjct: 470 STKKRPVPLLHYIYVYDSVYLVMDEKNKFYSSAFKEIYVKIREKQEANNKNTKQITSGSN 529
Query: 390 RRNSRKHADMN----SNNIVTS-----------------------FGQHQLSKN------ 416
+S + N N +T+ G ++ K
Sbjct: 530 NTSSNLKKNNNYYDSKNKYLTTTNNKENDNTQNNINNNNNNNNNVIGYYEYCKQKRKQKL 589
Query: 417 -SINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV 475
+ A ++++ ++ + L + LP + F F+R C+ + + N LD + S+V
Sbjct: 590 FANEASMKTEIQKLQTLIKKLDQDNKLPVVLFCFSRIKCETYAKCMPHLNFLDTNKKSKV 649
Query: 476 ELALKRFRILYPDAVRE----PAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVF 530
L +K P RE ++ LL KG+ HH+G LPI K +E LF +GL+KV+F
Sbjct: 650 HLFIKESISKLPKQDRELNQIQSLSKLLEKGIGVHHSGLLPILKEIVEILFSKGLIKVLF 709
Query: 531 ATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 590
ATET A GINMP ++ V +S+ K + LTS+E QM+GRAGRR D G+V +
Sbjct: 710 ATETFAMGINMPTKSVVFTSIYKHDHLRKRILTSSEYTQMSGRAGRRSSDKYGYVYIC-- 767
Query: 591 PYEGAEECC----------KLLFAGVEPLVSQFTASYGMVLNLLAGAKV----MHLSNES 636
CC +++ L S+F +Y M+L LL ++ M S+
Sbjct: 768 -------CCDNIPDQVQLTEMMMQKAVSLKSKFKVTYNMILKLLINKQINIEKMLFSSFL 820
Query: 637 DDMKALQ 643
+ +ALQ
Sbjct: 821 ESCRALQ 827
>gi|425781760|gb|EKV19706.1| ATP dependent RNA helicase (Dob1), putative [Penicillium digitatum
PHI26]
gi|425782939|gb|EKV20818.1| ATP dependent RNA helicase (Dob1), putative [Penicillium digitatum
Pd1]
Length = 1081
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 171/481 (35%), Positives = 266/481 (55%), Gaps = 37/481 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F +D FQ+ ++ + R SV+VSA TS+GKT++AE A ++ +R+ YT+P+K
Sbjct: 153 AKTWPFTLDPFQQVAVSSIQREESVLVSAHTSAGKTVVAEYAIAQSLKQNQRVIYTSPIK 212
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 213 ALSNQKYREFAAEFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR------ 264
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
+V +V DE+HY+ D++RG VWEE II P +V+ + LSAT+ NA + A WI ++H +
Sbjct: 265 EVQWVVFDEIHYMRDLNRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWIVKMHNQPC 324
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ ++ RP PL YF + + ++DEKG ++ + D ++
Sbjct: 325 HVVYTNYRPTPLQNYFFPAGGEGIHLVVDEKGVFREENFQKAMSAIADKKGDDPADALAK 384
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R+ K +N G ++ + +R + ++ P I F F
Sbjct: 385 RKGKGKDKQINK-------GGNKGPSDIFKIVR------------MIMLKNYNPVIVFSF 425
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAA 504
++R C+A + D+ E + V + +L P+ + P I+ +L +G+
Sbjct: 426 SKRECEAGALQMSKLTFNDDSEKNMVSKVFESAIEMLSPEDRQLPQIQNILPLLQQGIGV 485
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K + + +T
Sbjct: 486 HHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGTSQRWVTP 545
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNL 623
+E QM+GRAGRRG+D+RG +V++ E K + G + L S F Y M+LNL
Sbjct: 546 SEFIQMSGRAGRRGLDDRG-IVIMMVGEEMDPAVAKEIVRGEQDRLNSAFHLGYNMILNL 604
Query: 624 L 624
+
Sbjct: 605 M 605
>gi|383859905|ref|XP_003705432.1| PREDICTED: helicase SKI2W [Megachile rotundata]
Length = 1223
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 180/497 (36%), Positives = 256/497 (51%), Gaps = 64/497 (12%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ ELA + + +D FQ+ +I +V V+A TS+GKT +AE A + + R+ YT
Sbjct: 274 IPELAMSFSYELDTFQKQAILKLEENCNVFVAAHTSAGKTTVAEYAIALSQKHMTRVIYT 333
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQK+REF+ F ++VGLLTGD IN A LIMTTEIL++MLY +
Sbjct: 334 SPIKALSNQKYREFKRKF--DSVGLLTGDLQINSNASCLIMTTEILQSMLY------GAS 385
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L D++ ++ DEVHY+++ RG VWEE +I P+ V I+ LSATV N+ A W+G
Sbjct: 386 EVLRDLEFVIFDEVHYINNDERGHVWEESVILLPETVTIVMLSATVPNSIIFADWVGHTK 445
Query: 329 GKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK-DG 386
K + S+ +RPVPL Y T T GK N K L E + DG
Sbjct: 446 KKKMYVISTLKRPVPLQHYLYTGT--------DGKTQNDKF------LVVDERGLFLLDG 491
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----HLRSRDM 441
R N++ N+N + + P+ LW HL+S ++
Sbjct: 492 WYRAVNAKDAKSQNTNKDIKK-----------KRLPPQMTPKQEQVLWSAFINHLKSNNL 540
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG---- 497
LP + F+ +R+ CD + L + L E E + R + + +R +KG
Sbjct: 541 LPVVVFMLSRKRCDMSAVILRNVELTTETEKHAI-------RTFFQNNIRH--LKGSDRE 591
Query: 498 ----------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
L G+ HH+G LPI K +E LFQ G+VK++FATET A G+NMPART V
Sbjct: 592 LPQVLMMQELLQNGIGIHHSGILPILKEIVEMLFQNGVVKLLFATETFAMGVNMPARTVV 651
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGV 606
S+ K + L E QMAGRAGRRG D G V+++ +T E ++
Sbjct: 652 FDSIKKYDGTNFRILHPTEYIQMAGRAGRRGHDTAGMVIIMCRTAVPHFNELKTMMCGQA 711
Query: 607 EPLVSQFTASYGMVLNL 623
+ L S+F +Y MVLNL
Sbjct: 712 QNLESKFKVTYSMVLNL 728
>gi|219669097|ref|YP_002459532.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
gi|219539357|gb|ACL21096.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
DCB-2]
Length = 762
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 183/491 (37%), Positives = 265/491 (53%), Gaps = 66/491 (13%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
NE+I V E + + +D+FQ +++A G SV+V+APT +GKTL+A+ +A R
Sbjct: 8 NELIFVSE-RTYHGLVLDRFQEEALDAIDEGQSVIVAAPTGTGKTLVADYLVEKVMAEGR 66
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
RI YT P+KALSNQKF+++++ FG + VG+LTGD +N EA +LIMTTEI RN
Sbjct: 67 RIIYTAPIKALSNQKFKDYKQLFGVDQVGILTGDVVLNSEAPLLIMTTEIFRNQ------ 120
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+++++ L V I+ DE+H+L+D RGTVWEE II P ++++ LSAT+ANA +L W
Sbjct: 121 VITNDPSLESVSYIIFDEIHWLNDEERGTVWEESIILAPPHMKLLGLSATIANAQQLVDW 180
Query: 324 IGQIHGK-TELITSSRRPVPLT-WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
IG I + LI +RR VPL +YFS T L +NY +L
Sbjct: 181 IGTIRQEDVALIQENRRIVPLEYYYFSRDTGL----------------VNYEKLW----- 219
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
K+ + + G N ++ I+ Q +
Sbjct: 220 -------------KYYRQQIQSAPPTEGSLFAPTNHLDLIKVIQ-------------KQY 253
Query: 442 LPAIWFIFNRRGC-DAAVQYLEDCNLLDECEMSEVELA-LKRFRILYPDAVREPAIKGL- 498
LPA++F+F+R+ C D A + N L+ E +VE A L+ F P++ P+ + L
Sbjct: 254 LPALYFVFSRKQCADKASELAYLTNYLNPQEKRQVEDAFLEHFG---PESDWSPSTRLLR 310
Query: 499 ---LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
+KG+A HHAG +P K +EELF + LV V++ TET + GIN P R+ +L+K
Sbjct: 311 RLAVKGIAFHHAGLMPSQKVLVEELFLKRLVHVLYCTETFSVGINYPVRSVCFDTLNKFD 370
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFT 614
L ++E FQM+GRAGRRG+D RG+ LV Y + +EPL SQF
Sbjct: 371 GRNFRPLANHEFFQMSGRAGRRGLDERGYSFALVDLNYMEKSPPPRFNINRLEPLTSQFK 430
Query: 615 ASYGMVLNLLA 625
SY VLNL A
Sbjct: 431 LSYNTVLNLQA 441
Score = 41.6 bits (96), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 1099 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI---PKLPDVDQRLQ 1154
D + + +V +W+ G+++ E+ LD+GD+ ++RRTIDLL Q+ K P + QRL+
Sbjct: 688 DPRVAVIVYSWSQGVSFAEVQRLSNLDEGDIISVIRRTIDLLRQMRDAVKEPALLQRLK 746
>gi|391343562|ref|XP_003746078.1| PREDICTED: helicase SKI2W [Metaseiulus occidentalis]
Length = 1137
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 197/581 (33%), Positives = 299/581 (51%), Gaps = 68/581 (11%)
Query: 64 EHKLTDADEAADEYDDDIDDDDDEEAADEYDDVSG-EVSDEIQQSDD-EFEVSSDSSPAP 121
E++L + + D ++ +D +A+ + D+V E S+E+ + D + S P
Sbjct: 150 ENRLDNLQDILATLPDLVEVVEDSKASPDADNVVELEKSEELDRIPDVQLNEVLHISDMP 209
Query: 122 SWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSA 181
+ + +W V + V + E ++ + S + F +D FQ+ ++ +G +V VSA
Sbjct: 210 TLPTKTRWAEVVDISQPVTNY--EELNPNPAYS-WSFELDTFQKKAVLLMEKGENVFVSA 266
Query: 182 PTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAIN 241
TS+GKT++AE A + + + YT+P+K LSN+KFR+FRETF + VG++TGD IN
Sbjct: 267 HTSAGKTVVAEYAIALSRRHMTKAIYTSPIKTLSNEKFRDFRETF--DEVGIVTGDVQIN 324
Query: 242 REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC 301
R+A LIMTTEILR+MLY ++ D++ ++ DE HY++D RG VWEE++I
Sbjct: 325 RDAATLIMTTEILRSMLYNKASIID------DLEWVIFDECHYINDAERGVVWEEVLIML 378
Query: 302 PKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---------STKT 351
P V ++ LSATV NA LA WIG+I K +I +++RPVPL Y K
Sbjct: 379 PSHVNLVLLSATVPNALNLADWIGRIKQKRIHVIATTKRPVPLEHYLYVGRIGASSEQKQ 438
Query: 352 ALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQH 411
ALL +LD G+ S NYL++ + +
Sbjct: 439 ALL-ILDSAGQFK----SQNYLKVCAA-------------------------------KK 462
Query: 412 QLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECE 471
S N RS + + L +L+ +D PAI F +R+ CD L + ++ E
Sbjct: 463 STSNNWRGPDERS---RYLTLLQYLQKKDACPAILFTLSRKRCDDNAASLANVDMTTATE 519
Query: 472 MSEVELALKRFRI-LYPDAVREPAI---KGLLK-GVAAHHAGCLPIWKSFIEELFQRGLV 526
S++ + + L + R P + K LLK G+ HH+G LPI K +E LFQRGL+
Sbjct: 520 KSQIHRFIAQCTARLSSEDRRLPQVETLKLLLKNGIGVHHSGILPIMKEVVEMLFQRGLI 579
Query: 527 KVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV- 585
K++FATET A G+NMPART V + K L E QMAGRAGRRG D G V
Sbjct: 580 KILFATETFAMGVNMPARTVVFDRIRKYDGCQFRDLLPAEYIQMAGRAGRRGKDTVGTVL 639
Query: 586 VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 626
+++ + + ++ L S+F + M+LNL AG
Sbjct: 640 IMIHSDVPDSGSLQTMMMGKPHSLQSKFKVTTAMILNLKAG 680
>gi|302344032|ref|YP_003808561.1| DEAD/DEAH box helicase [Desulfarculus baarsii DSM 2075]
gi|301640645|gb|ADK85967.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
2075]
Length = 911
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 209/592 (35%), Positives = 302/592 (51%), Gaps = 62/592 (10%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F D FQ ++E G VVVSAPT SGKT IAE A +A +R +Y +PLKALSN
Sbjct: 53 FAADPFQAEAVEKLAEGD-VVVSAPTGSGKTWIAEQAIAQALAQGQRAWYASPLKALSNA 111
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
K+ EF FG VG+LTGD N +A +++ TTEILRN LY + M E+ D ++
Sbjct: 112 KYHEFGAIFGPERVGILTGDRKENSQAPLIVGTTEILRNQLYDA--MHRGEN--IDSSLV 167
Query: 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KTELITS 336
VLDE HYL D RG VWEE+IIY P V+++ LSATV NA++LA W+ + G + + S
Sbjct: 168 VLDEAHYLGDPDRGVVWEEVIIYLPPRVRLLLLSATVENAEQLARWLMFVRGNQCRTVRS 227
Query: 337 SRRPVPLTWYFSTKTA-LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 395
+RPVPL F L PL +G + K+S ++L+ + K G R+ NS
Sbjct: 228 DQRPVPLFPVFMFPDGELAPLKTRRG--LLGKIS-HFLEQEARQPK-----GGRQINS-- 277
Query: 396 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCD 455
PQ + L L MLPAI+F+ +R CD
Sbjct: 278 ------------------------------TPQFANILSALDHAAMLPAIFFLKSRADCD 307
Query: 456 AAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVREPAIKGLLK-GVAAHHAGCLPIW 513
A+ + L +D+ + + + F YP P ++ L + VAAHHAG LP W
Sbjct: 308 NALAHAAGARLAVDQAQGQRLNRFVDDFLAEYPFLADHPQLEPLRRLRVAAHHAGHLPHW 367
Query: 514 KSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGR 573
K +E L Q GL++ +F+T T+AAG+N PART V++ + + L + +L QM GR
Sbjct: 368 KLLVERLMQTGLLRAIFSTSTVAAGVNFPARTVVVTQSDRFNGREFVDLRATDLLQMTGR 427
Query: 574 AGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLS 633
AGRRG+DN G ++V PY+ LL A EP+ SQ ++ M LNLL LS
Sbjct: 428 AGRRGMDNIGFALIVPGPYQNVPLLAGLLNANPEPIESQLHINFSMALNLL-------LS 480
Query: 634 NESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDA 693
++K L G SL ++L E+ G M +L + ++ E +A
Sbjct: 481 QRPAEIKQL-LGCSLATFQRL-ERRGAKAAGEGGMAELMRQLAPLLAGSNCHGPE---EA 535
Query: 694 IDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRR-RMELKRFSALKDILK 744
+ R+ RR + + +A+ E ++ E+ L R R+ + F A+ +L+
Sbjct: 536 VVRRKRRRQLDGLRRRLAHELESMEQEQGLWAALTRGRVFIDMFGAMAAVLR 587
Score = 40.0 bits (92), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1083 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 1142
LE + G P S M AWA G + +++ +GDLA L+ RT D L Q
Sbjct: 822 LLERLRQWGFHTPALPMPAASAMF-AWALGQEFADVVALYGGAEGDLAALIYRTADNLRQ 880
Query: 1143 IPKLPDVDQRLQKNAVDASNVMDRPPI 1169
I L D L +A +A ++ RPP+
Sbjct: 881 IASLHDTHPALSASAREAVELLLRPPV 907
>gi|241957593|ref|XP_002421516.1| DEAD-box ATP-dependent RNA helicase, putative; mRNA export/exosome
component, putative [Candida dubliniensis CD36]
gi|223644860|emb|CAX40855.1| DEAD-box ATP-dependent RNA helicase, putative [Candida dubliniensis
CD36]
Length = 1068
Score = 287 bits (734), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 175/482 (36%), Positives = 267/482 (55%), Gaps = 40/482 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I R SV+VSA TS+GKT++AE A ++ +++R+ YT+P+K
Sbjct: 141 ARTYPFTLDPFQDTAISCIDRNESVLVSAHTSAGKTVVAEYAIAQSLRDKQRVIYTSPIK 200
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFRE + FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 201 ALSNQKFRELQAIFGD--VGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEVMR------ 252
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V +V DEVHY+ D SRG VWEE II P +V + LSAT+ NA E A WI +IH +
Sbjct: 253 EVAWVVFDEVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKIHNQPC 312
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL Y + + ++DEKG + N + ++ + ++ + D G
Sbjct: 313 HVVYTDFRPTPLQHYLFPAGGDGIHLVVDEKGTFREENFQKAMATISDNSGDDPAANDSG 372
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+ + T+ G++ K I I + + +++ + P I F
Sbjct: 373 RGNKKGK-----------TNKGRNHDGKGDIYKIVK---------MIYMKKYN--PVIVF 410
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGV 502
F++R C++ + + + E + + L P+A RE P IK +L +G+
Sbjct: 411 SFSKRDCESLALKMSKLDFNTDEERNSLTQIFYNAIELLPEADRELPQIKNILPLLKRGI 470
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K G +
Sbjct: 471 GIHHSGLLPILKEIIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGVGFRWV 530
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
+ E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LN
Sbjct: 531 SGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILN 590
Query: 623 LL 624
L+
Sbjct: 591 LM 592
Score = 41.6 bits (96), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 1067
G AA + +EL + +L + +L P Q+ + ++ + + L K + EP+
Sbjct: 900 GRVAAELSTGDELMITELLFSGFFNELTPQQICGLLSAFIFQERAKELPKLKPELAEPAK 959
Query: 1068 TVINVINVLDE-HRSSFLELQEKHGVEIPCCLDSQFS-GMVEA---WASGLTWREMMMDC 1122
+ N + + + S LE+ EK +E QF+ +VE W++G ++ +
Sbjct: 960 VIHETANKIAKISKQSGLEIVEKDYIE-------QFNLALVEVVFVWSNGASFSSICKMT 1012
Query: 1123 ALDDGDLARLLRRTIDLLAQI 1143
+ +G + R LRR I+L+ Q+
Sbjct: 1013 DIYEGSIIRALRREIELIKQL 1033
>gi|322696407|gb|EFY88200.1| ATP-dependent RNA helicase DOB1 [Metarhizium acridum CQMa 102]
Length = 1098
Score = 286 bits (733), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 188/552 (34%), Positives = 291/552 (52%), Gaps = 57/552 (10%)
Query: 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209
DE A ++F++D FQ S+ + R SV+VSA TS+GKT++AE A + +R+ YT+
Sbjct: 152 DEPARTWNFKLDPFQSLSVASIERDESVLVSAHTSAGKTVVAEYAVAQCLKRNQRVIYTS 211
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSES 269
P+KALSNQK+R+F FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 212 PIKALSNQKYRDFEAIFGD--VGLMTGDVTINSTASCLVMTTEILRSMLYRGSEIMR--- 266
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
+V ++ DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH
Sbjct: 267 ---EVAWVIFDEIHYMRDKTRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHH 323
Query: 330 KT-ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
+ ++ + RP PL YF S ++DEKG + +L ++ + D
Sbjct: 324 QACHVVYTDFRPTPLQNYFFPSGGKGARIVVDEKGNFNEQNFNLVMKEVEDKKGADSNDI 383
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
+++R K+ +N + H++ + +I + P I
Sbjct: 384 NAKQRGKGKNKKINKGGVDEGSDIHKIIRMTIK-------------------KKFNPVIV 424
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KG 501
F F++ C+ + + + D+ E + V+ + RE P I+ LL +G
Sbjct: 425 FNFSKAECENMALRISNLSFNDDSEKAMVKKVFHSAIESLTEQDRELPQIQHLLPLLERG 484
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
V HH+G LPI K IE LFQ L+KV+FATET + G+NMPA+T V + ++K R
Sbjct: 485 VGVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVKRRP 544
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
LTS+E QMAGRAGRRG+D RG V+++ + ++ + L S F Y M+L
Sbjct: 545 LTSSEYIQMAGRAGRRGLDARGIVIMMIDDKLEPDTAKDIVTGHQDKLNSAFYLGYNMIL 604
Query: 622 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKE 681
NLL ++ +S E ++E+ F + + + + + EL +Q+E
Sbjct: 605 NLL---RIEAISPEF-----------------MLERCFHQFQNAASVPSLEKELMSLQQE 644
Query: 682 TDVLTSEISDDA 693
D L+ I D+A
Sbjct: 645 RDGLS--IPDEA 654
>gi|50251266|dbj|BAD28046.1| putative Helicase SKI2W [Oryza sativa Japonica Group]
Length = 1281
Score = 286 bits (733), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 188/503 (37%), Positives = 269/503 (53%), Gaps = 38/503 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V ++A Y F +DKFQ+ +I +G SV V+A TS+GKT++AE A + R YT
Sbjct: 278 VPDMAIEYPFELDKFQKEAIYYLQKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 337
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
P+K +SNQK+R+F F +VGLLTGD +I EA LIMTTEILR+MLY+ ++
Sbjct: 338 APIKTISNQKYRDFCGKF---DVGLLTGDVSIRPEATCLIMTTEILRSMLYRGADIIR-- 392
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ ++ DEVHY++D RG VWEE+II PK + I+ LSATV N E A WIG+
Sbjct: 393 ----DIEWVIFDEVHYVNDAERGVVWEEVIIMLPKHINIVLLSATVPNTVEFADWIGRTK 448
Query: 329 GKTELITSS-RRPVPL---------TWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTS 378
K +TS+ +RPVPL + K A L + K + +K + + L +
Sbjct: 449 QKKIHVTSTNKRPVPLEHCLFYSGEVFKICEKDAFLTQGYREAKEVFKKKNSSKLGMKPG 508
Query: 379 EVKPYKD---GGSRRRN---SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 432
KP G++ RN S + D + + + S + RRS+ +
Sbjct: 509 S-KPGTTAVRAGTQGRNPDTSSRGRDQKNPKHHHASSSAAAVQQSTSGPRRSESSFWMPL 567
Query: 433 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVR 491
+ +L + ++P + F F++ CD + + + +L E SE+ L K F L
Sbjct: 568 INNLLKKSLVPVVIFCFSKNRCDRSAESMFGADLTSNSEKSEIRLFCDKAFSRLKGSDRN 627
Query: 492 EPAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART-- 545
P + G L +G+ HHAG LPI K +E LF RG++KV+F+TET A G+N PART
Sbjct: 628 LPQVVGIQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTLK 687
Query: 546 --AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 603
V SL K +L E QMAGRAGRRG+DN G V+++ E K L
Sbjct: 688 DLVVFDSLRKFDGKEHRKLLPGEYIQMAGRAGRRGLDNIGTVIVMCRDEIPEESDLKNLI 747
Query: 604 AGVEP--LVSQFTASYGMVLNLL 624
G +P L SQF +Y M+L+LL
Sbjct: 748 VG-KPTRLESQFRLTYTMILHLL 769
>gi|157137573|ref|XP_001664014.1| helicase [Aedes aegypti]
gi|108869679|gb|EAT33904.1| AAEL013825-PA [Aedes aegypti]
Length = 947
Score = 286 bits (733), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 184/497 (37%), Positives = 259/497 (52%), Gaps = 73/497 (14%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
+A Y F +D FQ+ +I + V V+A TS+GKT++AE A + + + YT+P+
Sbjct: 1 MAHKYPFELDIFQKQAIIKLEEHNHVFVAAHTSAGKTVVAEYAIALSKKHMTKTIYTSPI 60
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+R+F+ TF D VGL+TGD I+ A LIMTTEILR+MLY +
Sbjct: 61 KALSNQKYRDFKTTFQD--VGLITGDIQIDPTASCLIMTTEILRSMLYCGSDITR----- 113
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK- 330
D++ ++ DEVHYL+D RG VWEE++I P V I+ LSATV N E A W+G+ K
Sbjct: 114 -DLEYVIFDEVHYLTDADRGHVWEEVLILLPDHVCIVMLSATVPNTLEFANWVGKTKKKR 172
Query: 331 TELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 384
++++ +RPVPL Y TK L ++DEK N+L
Sbjct: 173 VYVVSTPKRPVPLEHYLYTGCGGKTKDDLFLVVDEKS---------NFLM---------- 213
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSI-NAIRRSQVPQVID-TLW-----HLR 437
DG + + ++ L+KN+ NA+R+ Q Q + TLW HL
Sbjct: 214 DGYRKAKEAK------------------LAKNTTKNAVRQGQFNQKQEQTLWVGLIHHLE 255
Query: 438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEM----SEVELALKRFRILYPDAVREP 493
+P + F +R CD L C+L E S +L L++ + PD +
Sbjct: 256 KNKKMPVVAFTLSRNRCDNNANALMSCDLTTPSEKYFINSFFQLCLQKLK--PPDRILPQ 313
Query: 494 AIK---GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
I+ L +G+ HH+G LPI K +E LF RGLVK++FATET A G+NMPA+T + S
Sbjct: 314 VIQVQNCLQRGIGIHHSGILPILKEIVEMLFARGLVKILFATETFAMGVNMPAKTVIFDS 373
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL---VQTPYEGAEECCKLLFAGVE 607
K L E QMAGRAGRRG+D G V++ V P E + ++
Sbjct: 374 TKKFDGQTSRLLQPAEYTQMAGRAGRRGLDKNGTVIIICKVDVPSES--DLRNMILGKPM 431
Query: 608 PLVSQFTASYGMVLNLL 624
L SQF +Y M+L LL
Sbjct: 432 RLESQFRLTYAMILYLL 448
>gi|123439993|ref|XP_001310762.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121892545|gb|EAX97832.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 965
Score = 286 bits (732), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 174/485 (35%), Positives = 259/485 (53%), Gaps = 39/485 (8%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
YDF D+FQ+ +I SV+VSA TS+GKT+IA+ A V+ + N R+ YT+P+KALS
Sbjct: 54 YDFEFDEFQKCAIACVHNKESVLVSAHTSAGKTVIAKYAIVSALQNNSRVVYTSPIKALS 113
Query: 216 NQKFRE----FRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
NQK++E F FG VGLLTGD IN A +L+MTTEILR ML+ ++
Sbjct: 114 NQKYKELADEFEPRFGKGCVGLLTGDVTINPSASVLVMTTEILRMMLFMQDTLIR----- 168
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
++ +V DEVHY+ D SRG VWEE II P +V+ + LSAT+ NA E + WI H +
Sbjct: 169 -ELSWVVYDEVHYMKDRSRGVVWEESIIMLPDDVRFVFLSATIPNAREFSEWIATTHKQV 227
Query: 332 -ELITSSRRPVPLTWYFSTKTALLPLL--DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ + RRPVPL +Y S P + + +G+ +++ +L + ++ G
Sbjct: 228 CHVVYTERRPVPLHFYLSPLGQPKPYMVRNAEGEINDQQFALACASVKSNAGASKTFGSV 287
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
+ ++S S + GQH ++I+ L++ ++ P I F+
Sbjct: 288 QVKSSETTKSKVSKK---ALGQHTC--------------KIIENLYN---SNLYPMIVFV 327
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE--PAIKGLLK----GV 502
F+R+ CD + L + L E V + P+ P IK + + G+
Sbjct: 328 FSRKECDNIHESLGERTFLKPEEKYYVTEVFQNAIQRIPNEADRNLPQIKHMKRLVERGI 387
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH G +PI K +E LFQ L+KV+FATET + G+NMPA+T V +SL K + +
Sbjct: 388 GVHHGGLMPILKEVVELLFQYHLIKVLFATETFSMGLNMPAKTVVFNSLQKFDGNELRTI 447
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
++E QMAGRAGRR D G VV+ + L+ +G +PL S+F +Y M+LN
Sbjct: 448 HTSEFIQMAGRAGRRNKDQFGAVVINYGGEPSPADLKALMTSGAQPLNSEFRVTYNMILN 507
Query: 623 LLAGA 627
L A
Sbjct: 508 SLTSA 512
>gi|357138765|ref|XP_003570958.1| PREDICTED: uncharacterized helicase C550.03c-like [Brachypodium
distachyon]
Length = 1274
Score = 286 bits (732), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 202/573 (35%), Positives = 294/573 (51%), Gaps = 51/573 (8%)
Query: 84 DDDEEAADEYDDVSGEVSD-------EIQQSDDEFEVSSDSSPAPSWREEFKWQRV---E 133
D D++ D DVS +D E+Q + E S D PA +E W E
Sbjct: 208 DTDKQEFDVIGDVSEAQTDLDKMLSSEVQDTHRELSGSVDDKPA---QEGMVWALAGGDE 264
Query: 134 KLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEA 193
+ F V ++A + F +DKFQ+ +I +G SV V+A TS+GKT++AE
Sbjct: 265 DIATNFHRF------VPDMAIEFPFELDKFQKEAIYYLEKGESVFVAAHTSAGKTVVAEY 318
Query: 194 AAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEI 253
A + R YT P+K +SNQK+R+F G +VGLLTGD +I EA LIMTTEI
Sbjct: 319 AFALATKHCTRAVYTAPIKTISNQKYRDF---CGKFDVGLLTGDVSIRPEATCLIMTTEI 375
Query: 254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSAT 313
LR+MLY+ ++ D++ ++ DEVHY++D RG VWEE+II PK + I+ LSAT
Sbjct: 376 LRSMLYRGADIIR------DIEWVIFDEVHYVNDAERGVVWEEVIIMLPKHINIVLLSAT 429
Query: 314 VANADELAGWIGQIHGKTELITSS-RRPVPL--TWYFSTKTALLPLLDEKGKHMNRKLSL 370
V NA E A WIG+ K +TS+ +RPVPL ++S +T + D R+
Sbjct: 430 VPNAVEFAEWIGRTKQKKIRVTSTNKRPVPLEHCLFYSGETYKVCEKDMFLTQGFREAKD 489
Query: 371 NYLQLSTSE--VKPYKDGGS---RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 425
+ ++++ VKP G+ R ++ D +S +H + + AI++S
Sbjct: 490 TFKMKNSNKLGVKPGSKSGTPATRPGTQGRNPDTSSRGKDQKHPKHHHTNSGAAAIQQSS 549
Query: 426 VPQVIDT--LW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELA 478
W +L + ++P + F F++ CD + + +L + SE+ +
Sbjct: 550 SGSKRSESSFWMPLINNLLKKSLVPVVIFCFSKNRCDRSADSMFGADLTSNSDKSEIRVF 609
Query: 479 L-KRFRILYPDAVREPAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE 533
K F L P + G L +G+ HHAG LPI K +E LF RG++KV+F+TE
Sbjct: 610 CDKAFSRLKGSDRNLPQVVGIQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTE 669
Query: 534 TLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593
T A G+N PART V SL K +L E QMAGRAGRRG+D G V+++
Sbjct: 670 TFAMGVNAPARTVVFDSLRKFDGKEHRKLLPGEYIQMAGRAGRRGLDTIGTVMIMCRDEI 729
Query: 594 GAEECCKLLFAGVEP--LVSQFTASYGMVLNLL 624
E K L G +P L SQF +Y M+L+LL
Sbjct: 730 PEESDLKNLIVG-KPTRLESQFRLTYTMILHLL 761
>gi|336263716|ref|XP_003346637.1| hypothetical protein SMAC_04070 [Sordaria macrospora k-hell]
gi|380091343|emb|CCC10839.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1079
Score = 286 bits (732), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 187/489 (38%), Positives = 265/489 (54%), Gaps = 47/489 (9%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A Y F++D FQ S+ + R SV+VSA TS+GKT++AE A + +R+ YT+P
Sbjct: 163 EPARTYSFKLDPFQALSVASIEREESVLVSAHTSAGKTVVAEYAIAQCLKKNQRVIYTSP 222
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+R+F+ FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 223 IKALSNQKYRDFQAEFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR---- 276
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V +V DE+HY+ D RG VWEE II P +V+ + LSAT+ NA + A WI +IH +
Sbjct: 277 --EVAWVVFDEIHYMRDKIRGVVWEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHRQ 334
Query: 331 T-ELITSSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKD 385
++ + RP PL YF + +L ++DEKG K N ++ ++
Sbjct: 335 ACHVVYTDFRPTPLQNYFFPAGGKGILLIVDEKGNFKENNFNQAMAMIE----------- 383
Query: 386 GGSRRRNSRKHADMN--SNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 443
+K D N S + +K A ++ + ++I + ++ P
Sbjct: 384 -------EKKGTDSNDWSAKQKGKGKNKKTNKGGEAANEKADIAKIIKMIL---KKNFQP 433
Query: 444 AIWFIFNRRGCD--AAVQYLEDCNLLDECEMSE--VELALKRFRILYPDAVREPAIKGLL 499
I F F++R C+ A N DE M E AL + L D P I +L
Sbjct: 434 VIVFNFSKRECEQMALASSTMKFNAPDEENMVNKVFENALAQ---LSEDDKNLPQIANIL 490
Query: 500 ----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
KG+ HH+G LPI K IE LFQ GL+KV+FATET + G+NMPART V + ++K
Sbjct: 491 PLLRKGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFTQVTKWD 550
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 615
R LTS+E QMAGRAGRRG+D+RG V+++ E ++ + L S F
Sbjct: 551 GQQRRPLTSSEYIQMAGRAGRRGLDDRGIVIMMVDDKLEPETARAIVVGNQDKLNSAFHL 610
Query: 616 SYGMVLNLL 624
Y MVLNLL
Sbjct: 611 GYNMVLNLL 619
>gi|357617976|gb|EHJ71092.1| hypothetical protein KGM_14675 [Danaus plexippus]
Length = 1252
Score = 286 bits (731), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 185/510 (36%), Positives = 261/510 (51%), Gaps = 59/510 (11%)
Query: 145 EMIDVD-----------ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEA 193
EMIDV ++A Y F +D FQ+ +I G V V+A TS+GKT++AE
Sbjct: 281 EMIDVSLPVPDFKEKIKDMAHSYPFELDSFQKQAILKLEEGHHVFVAAHTSAGKTVVAEY 340
Query: 194 AAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEI 253
A + N R YT+P+KALSNQK+ +F + FG+ VGLLTGD IN A L+MTTEI
Sbjct: 341 AIAMSRRNCTRAIYTSPIKALSNQKYNDFNKMFGE--VGLLTGDLQINATASCLVMTTEI 398
Query: 254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSAT 313
LR+MLY + D++ ++ DEVHY+++ RG VWEE++I P V I+ LSAT
Sbjct: 399 LRSMLYCGSDVTR------DLEFVIFDEVHYINNTERGYVWEEVLILLPAHVSIVMLSAT 452
Query: 314 VANADELAGWIGQIHG-KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 372
V N + A W+G+ K ++++ +RPVPL Y T + GK N + L
Sbjct: 453 VPNTLQFADWVGRTKKRKVYVVSTPKRPVPLCHYLYTGSG--------GKSKNERF-LVV 503
Query: 373 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 432
Q +++ Y + + N SFG ++ P+ T
Sbjct: 504 DQEGAFQLRGYNE-------AAAAKKARENEYKKSFGP--------KGGKQFGNPKAEQT 548
Query: 433 LW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF--RIL 485
+W HLRS D LP + F +R CD + L +L E S ++ R R+
Sbjct: 549 MWVAFIDHLRSCDKLPVVAFTLSRNRCDQNAENLMSVDLTTAKEKSHIKSFFMRCLQRLK 608
Query: 486 YPDAVREPAIK---GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 542
PD I+ L G+ HH+G LP+ K +E LFQ G VK++FATET A G+NMP
Sbjct: 609 EPDRKLPQVIRLQRVLENGIGVHHSGILPLLKEIVEMLFQSGHVKILFATETFAMGVNMP 668
Query: 543 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL- 601
ART V ++K L E QMAGRAGRRG+D+ G V+++ EG + L
Sbjct: 669 ARTVVFDDITKFDGIQSRSLAPAEYIQMAGRAGRRGLDDTGTVIILCK--EGVPDQVTLK 726
Query: 602 --LFAGVEPLVSQFTASYGMVLNLLAGAKV 629
+ + L SQF +Y M+L+LL A V
Sbjct: 727 GMMLGTPQKLSSQFRLTYAMILSLLRVATV 756
>gi|357110946|ref|XP_003557276.1| PREDICTED: superkiller viralicidic activity 2-like 2-like
[Brachypodium distachyon]
Length = 993
Score = 286 bits (731), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 170/478 (35%), Positives = 252/478 (52%), Gaps = 40/478 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F++D FQ +I G SV+VSA TS+GKT++A ++ NQ+R+ YT+P+K
Sbjct: 69 AKTFPFKLDPFQSEAIRCLDNGESVMVSAHTSAGKTVVALYVIAMSLRNQQRVIYTSPIK 128
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF+E F D VGL+TGD I A L+MTTEI R+M Y+ ++
Sbjct: 129 ALSNQKYREFKEEFSD--VGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEVMR------ 180
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H +
Sbjct: 181 EVAWVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQPC 240
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y S L ++DE GK + Q S + + P G +
Sbjct: 241 HIVYTDYRPTPLQHYVFPSGGDGLYLVVDENGKFRE-----DSFQKSLNVLAPASGGDKK 295
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R N ++ + I+A + + + + + R P I F F
Sbjct: 296 RENGKR-------------------QKGISAGKPGEESDIFKMVKMIIQRQYDPVILFSF 336
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL----KGVAA 504
++R C+ + +L ++ E +E +L D + P + +L +G+
Sbjct: 337 SKRECEFLAMQMAKMDLNEDDEKVNIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGV 396
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K L+S
Sbjct: 397 HHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSS 456
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
E QM+GRAGRRGID+RG +L+ +L G + L S F SY M+LN
Sbjct: 457 GEYIQMSGRAGRRGIDDRGICILMVDDKMEPSTAKMMLKGGADSLNSAFHLSYNMLLN 514
>gi|378756169|gb|EHY66194.1| ATP-dependent DEAD/H RNA helicase [Nematocida sp. 1 ERTm2]
Length = 970
Score = 286 bits (731), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 179/479 (37%), Positives = 256/479 (53%), Gaps = 40/479 (8%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
Y F++DKFQ +++ R S++VSA TS+GKTL+AE + ++ ++R+ YT+P+KALS
Sbjct: 69 YPFKLDKFQEIALQCLERDESLLVSAHTSAGKTLVAEYSIHLSIQRKQRVIYTSPIKALS 128
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+RE E FGD VGL+TGD +N ++ ++MTTEILRNM+Y+ + L +
Sbjct: 129 NQKYRELNEKFGD--VGLMTGDVTLNPDSTCIVMTTEILRNMIYRGTEI------LRETH 180
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
+V DEVHY+ D RG +WEE II P ++ I LSAT+ NA+E A WI IH + +I
Sbjct: 181 FVVFDEVHYMRDRERGVIWEETIILLPPSIRFIFLSATIPNAEEFARWIVSIHKQPCHVI 240
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
+ +RP PL Y T K H N T ++K D +
Sbjct: 241 YTEKRPTPLEHYIYVNTP-----GNKITHRN-----------TDQLKTVSDQLFVIVD-- 282
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
K + NI + ++S+ RR + V+D L LR + LP I F F R+ C
Sbjct: 283 KEGTFQTKNIPRIQRRPEISQ---GYNRRRETINVVDILRILRQTNNLPTIIFSFRRKEC 339
Query: 455 DAAVQYLE---DCNLLDECEMSEVELALKRFRILYPDAVREPAIKG----LLKGVAAHHA 507
++ E D N E +M + L + P I G LL+G+ HH+
Sbjct: 340 ESYAMLTEKEFDFNTDKEKDMISTIFS-NALNTLREEDRTLPQIVGLKALLLRGIGVHHS 398
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
G +PI K IE LFQ L+KV+FATET + G+NMPA++ + +S+ K +TS E
Sbjct: 399 GLMPIVKEIIEILFQENLLKVLFATETFSIGLNMPAKSVIFTSIKKFDGVQTRFITSGEY 458
Query: 568 FQMAGRAGRRGIDNRGHVVLV--QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
QM+GRAGRRG D G+V+L T +E K+L L S F SY +LN+L
Sbjct: 459 IQMSGRAGRRGTDRIGNVILALESTMTLTEKEIRKVLHGPSNTLDSAFKLSYNTILNIL 517
>gi|269860278|ref|XP_002649861.1| helicase, predicted [Enterocytozoon bieneusi H348]
gi|220066701|gb|EED44174.1| helicase, predicted [Enterocytozoon bieneusi H348]
Length = 952
Score = 286 bits (731), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 179/482 (37%), Positives = 261/482 (54%), Gaps = 71/482 (14%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A +Y F +D FQ+ +I A S++VSA TS GKT++AE A ++ N +R+ YT+P+K
Sbjct: 59 AKVYPFELDTFQKIAIAAIEADRSILVSAHTSCGKTVVAEYAIAKSIQNNQRVIYTSPIK 118
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFRE +E F D VGL+TGD +N EA L+MTTEILRNM+Y+ ++
Sbjct: 119 ALSNQKFRELQEEFED--VGLMTGDVTLNPEATCLVMTTEILRNMMYRESEIIK------ 170
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
++ I+ DE+HYL D RG VWEE +I V+++ LSAT+ NA E A WI IH +
Sbjct: 171 EIHWIIFDEIHYLKDRERGVVWEETLILAKNYVRMVFLSATIPNAREFAEWICTIHKQIV 230
Query: 332 ELITSSRRPVPLT-WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
++ + +R +PL ++FS K L+ K+ + KLS+N + S+ +K G +
Sbjct: 231 HVVYTEKRIIPLKHYFFSDKQYLI-------KNKDEKLSMN--NFNASQKLIFK--GKKE 279
Query: 391 RNSRKHADMNSNN---IVTSFGQ---HQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
A +NS N +V SF + Q +K+ I + ++D
Sbjct: 280 TVKGLLACLNSVNLPAVVFSFARVKCEQFAKSIIKS---------------YLTKDEYKL 324
Query: 445 IWFIFNRRGCDAAVQYL--EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGV 502
IFN A+Q L ED NL+ M E+ LKG+
Sbjct: 325 AQMIFNN-----AIQSLSDEDQNLIAVTTMKEL----------------------FLKGI 357
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH+G LPI K E LFQ GL+K++FATE+ + G+NMPA+T + +SL K L
Sbjct: 358 GVHHSGLLPIVKEIGEILFQEGLIKILFATESFSIGLNMPAKTVIFTSLKKFDGHEERIL 417
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
TS E QM+GRAGRRG+D G +V + + E ++ + +PL+S F +Y M+LN
Sbjct: 418 TSGEYCQMSGRAGRRGLDKEGIIVSLCSEKISIGEVTQMFHSACDPLISAFRLTYNMILN 477
Query: 623 LL 624
L+
Sbjct: 478 LM 479
>gi|341038500|gb|EGS23492.1| ATP dependent RNA helicase (dob1)-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 1097
Score = 285 bits (730), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 199/555 (35%), Positives = 292/555 (52%), Gaps = 62/555 (11%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A Y F++D FQ S+ + R SV+VSA TS+GKT++AE A + +R+ YT+P
Sbjct: 154 EPARTYPFKLDPFQAMSVASIERDESVLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTSP 213
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQKFR+F+ FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 214 IKALSNQKFRDFQAEFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR---- 267
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V ++ DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH +
Sbjct: 268 --EVAWVIFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAYQFAEWIAKIHRQ 325
Query: 331 T-ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL YF + + ++DEKG N+ Q + S ++ K
Sbjct: 326 ACHVVYTDFRPTPLQNYFFPAGGKGIYLIVDEKGNFKEH----NFNQ-AMSAIEQSKGAD 380
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
S N+R + I T G+ K+ I I + + ++ P I F
Sbjct: 381 SADPNARMKGRGKNKRIHT--GEATDGKSDIAKIIKLII-----------KKNFQPVIVF 427
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFR----ILYPDAVREPAIKGLL---- 499
F++R C+ Q + L E EL F L D + P I +L
Sbjct: 428 NFSKRECE---QLALATSSLKFNSPQEEELVNSVFGNAIGQLSEDDRQLPQISNILPLLR 484
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
KG+ HH+G LPI K IE LFQ GL+KV+FATET + G+NMPART V S ++K R
Sbjct: 485 KGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFSQVTKWDGKTR 544
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
LT +E QMAGRAGRRG+D+RG V+++ E ++ + L S F Y M
Sbjct: 545 RPLTPSEYIQMAGRAGRRGLDDRGIVIMMVDEKLEPEVARSVVVGQQDRLNSAFHLGYNM 604
Query: 620 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 679
+LNLL ++ +S E ++E+ F + ++ + + EL +Q
Sbjct: 605 ILNLL---RIEAISPEY-----------------MLERCFFQFQTAHSIPQLERELAALQ 644
Query: 680 KETDVLTSEISDDAI 694
+E D + I D+A+
Sbjct: 645 QERDSMI--IPDEAL 657
>gi|171688888|ref|XP_001909384.1| hypothetical protein [Podospora anserina S mat+]
gi|170944406|emb|CAP70516.1| unnamed protein product [Podospora anserina S mat+]
Length = 1082
Score = 285 bits (730), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 197/579 (34%), Positives = 301/579 (51%), Gaps = 71/579 (12%)
Query: 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209
+E A +Y F++D FQ S+ + RG SV+VSA TS+GKT++AE A + +R+ YT+
Sbjct: 139 EEPARVYPFKLDPFQALSVASIERGESVLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTS 198
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSES 269
P+KALSNQK+R+F+ FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 199 PIKALSNQKYRDFQAEFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR--- 253
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH
Sbjct: 254 ---EVAWVVFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHR 310
Query: 330 KT-ELITSSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYK 384
+ ++ + RP PL YF + + ++DEKG K N + ++N ++
Sbjct: 311 QACHVVYTDFRPTPLQNYFFPAGGKGIFLIVDEKGNFKENNFQHAMNLIE---------A 361
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
+ GS AD ++ + ++ + + + + P
Sbjct: 362 NKGS------DPADWSAKRKGKGKDKKTNKGGDAP----NETADIAKIIRMIVKKKFQPV 411
Query: 445 IWFIFNRRGCD--AAVQYLEDCNLLDECEMSE--VELALKRFRILYPDAVREPAIKGLL- 499
I F F++R C+ A N DE M + E AL++ + + I LL
Sbjct: 412 IVFNFSKRDCEQMALKSSHMKFNAPDEELMVDKVFENALQQLSDEDKNLAQITNILPLLR 471
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
KG+ HH+G LPI K IE LFQ GL+KV+FATET + G+NMPART V + ++K R
Sbjct: 472 KGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFTQVTKWDGVAR 531
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
LTS+E QMAGRAGRRG+D+RG V+++ + ++ + L S F Y M
Sbjct: 532 RPLTSSEYIQMAGRAGRRGLDDRGIVIMMVDDKLDPDTAKSVVVGHQDRLNSAFHLGYNM 591
Query: 620 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 679
+LNLL ++ +S E ++E+ F + + + + EL +Q
Sbjct: 592 ILNLL---RIEAISPEF-----------------MLERCFFQFQNAASVPQLEKELTALQ 631
Query: 680 KETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELK 718
+E D + L E+ K+ +L+E+LK
Sbjct: 632 EEKDAML--------------LPDESTVKDYYHLREQLK 656
>gi|350409639|ref|XP_003488801.1| PREDICTED: helicase SKI2W-like [Bombus impatiens]
Length = 1232
Score = 285 bits (730), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 178/505 (35%), Positives = 264/505 (52%), Gaps = 78/505 (15%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ ELA + + +D FQ+ +I G +V V+A TS+GKT +AE A + + ++ YT
Sbjct: 281 IPELAMSFPYELDTFQKQAILKLEEGCNVFVAAHTSAGKTTVAEYAIALSQKHMTKVIYT 340
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQK+R+ + FG +VGLLTGD IN A LI+TTEIL++MLY +
Sbjct: 341 SPIKALSNQKYRDLKRKFG--SVGLLTGDLQINPNASCLIITTEILQSMLY------CAS 392
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI- 327
L D++ ++ DEVHY+++ RG VWEE +I P+ V ++ LSATV N A W+G+
Sbjct: 393 EVLRDLEFVIFDEVHYINNDERGHVWEESVILLPQTVTLVMLSATVPNPLIFADWVGRTK 452
Query: 328 HGKTELITSSRRPVPLTWYF------STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
KT +I++ +RPVPL Y TK +LDE G +
Sbjct: 453 KKKTYVISTLKRPVPLQHYLYTGTDGKTKDNKFLVLDESGHFL----------------- 495
Query: 382 PYKDG---GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW---- 434
DG + +N + ++ N+ ++ Q Q++ P+ LW
Sbjct: 496 --LDGWYKATTAQNPKNQSNKNAKDVKRIPTQRQMT------------PKQEQVLWNAFI 541
Query: 435 -HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP 493
HLR+++MLP + F+ +R+ CD + L + +L E E + R + + +R
Sbjct: 542 SHLRTQNMLPVVVFMLSRKRCDMSAILLRNVDLTTETEKHTI-------RTFFQNNIRH- 593
Query: 494 AIKG--------------LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 539
+KG L G+ HH+G LPI K +E LFQ G+VK++FATET A G+
Sbjct: 594 -LKGTDRQLPQVLMMQELLESGIGIHHSGILPILKEIVEMLFQTGVVKLLFATETFAMGV 652
Query: 540 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEEC 598
NMPART V S+ K + L +E QMAGRAGRRG D G V V+ +T E
Sbjct: 653 NMPARTVVFDSIKKYDGTNFRILYPSEYVQMAGRAGRRGHDTAGMVIVMCRTLVPHFNEL 712
Query: 599 CKLLFAGVEPLVSQFTASYGMVLNL 623
++ + L S+F +Y MVLNL
Sbjct: 713 QNMMCGQAQNLESKFKVTYSMVLNL 737
>gi|392597771|gb|EIW87093.1| translation repressor [Coniophora puteana RWD-64-598 SS2]
Length = 1253
Score = 285 bits (730), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 207/625 (33%), Positives = 303/625 (48%), Gaps = 102/625 (16%)
Query: 74 ADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSD-DEFEVSSDS-----SPAPSWREEF 127
+E DDD+ D E ++++G + + +D DE ++ S SP S
Sbjct: 176 GEEVDDDLFD-----LVPENEELNGAIPSTREATDIDELLPTTRSKRLTQSPQRSHLRPA 230
Query: 128 KWQRVEKLCNEVKEFGNEMIDVD-----------ELASIYDFRIDKFQRSSIEAFLRGSS 176
K + K VK ++D++ E+A Y F +D FQ+ ++ G S
Sbjct: 231 KRNQRAKKTTAVKRDWAHVVDINKPMTNFHELVPEMAHKYPFELDTFQKEAVYHLEMGDS 290
Query: 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236
V V+A TS+GKT++AE A + R YT+P+KALSNQKFR+F++TF ++VG+LTG
Sbjct: 291 VFVAAHTSAGKTVVAEYAIALAEKHMTRAIYTSPIKALSNQKFRDFKQTFSSSSVGILTG 350
Query: 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD--------- 287
D IN EA L+MTTEILR+MLY+ ++ DV+ ++ DEVHY++D
Sbjct: 351 DVQINPEASCLVMTTEILRSMLYKGADLIR------DVEFVIFDEVHYVNDAEVPPFACT 404
Query: 288 --------ISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSR 338
+ RG VWEE+II P V II LSATV N E A W+G+ K +I++++
Sbjct: 405 LSSPFIHHLQRGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTKKKDIYVISTAQ 464
Query: 339 RPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS--RRRN--SR 394
RPVPL Y ++D K +++ YK+ G RR+ R
Sbjct: 465 RPVPLEHYLYAGRDTFKIVDASRKFLSQG---------------YKEAGEALRRKQDKER 509
Query: 395 KHADMNSNNIV------------------TSFGQHQLSKNSINAIRRSQVPQVIDTLWHL 436
+ A + V G +IN + + L HL
Sbjct: 510 EAAGLAPVQRVGARGAAARGGQRGGGPNRGGGGGRGGPPRTINTGMDKNL--YVHLLSHL 567
Query: 437 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAI 495
+ + +LP + F +++ C+ L + NL + E SEV +A+ K L + P I
Sbjct: 568 QKKALLPVVVFTLSKKRCEENASTLTNANLCNAVERSEVHVAIEKAISRLKGTDKKLPQI 627
Query: 496 ---KGLL-KGVAAHHAGCLPIWK-----SF------IEELFQRGLVKVVFATETLAAGIN 540
+ LL +G+ HH G LPI K SF +E LF RGLVK++FATET A G+N
Sbjct: 628 ARMRDLLSRGIGVHHGGLLPIVKEVRSMSFLPLLWVVEILFARGLVKILFATETFAMGVN 687
Query: 541 MPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK 600
MPA+ V S + K + E QMAGRAGRRG+D G V++V + +
Sbjct: 688 MPAKCVVFSGIRKHDGKSFRDILPGEYTQMAGRAGRRGLDPTGTVIIVTQNELPEQTALQ 747
Query: 601 LLFAGVEP-LVSQFTASYGMVLNLL 624
+ GV L SQF +Y M+LNLL
Sbjct: 748 HMMLGVPAKLSSQFRLTYNMILNLL 772
>gi|303285234|ref|XP_003061907.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456318|gb|EEH53619.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 979
Score = 285 bits (730), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 181/489 (37%), Positives = 261/489 (53%), Gaps = 41/489 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQR S+E G SV+V+A TS+GKT++AE A + +++R+ YT+PLK
Sbjct: 50 AKHYKFELDTFQRKSVEVMEMGESVMVAAHTSAGKTVVAEYAIAMALRDRQRVVYTSPLK 109
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFRE R+ F D VGL+TGD+ IN +A L+MTTE+LR+MLY+ G V E G
Sbjct: 110 ALSNQKFRELRDEFAD--VGLMTGDTTINTDASCLVMTTEVLRSMLYKG-GEVMREVGW- 165
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
++ DE+HY+ D RG VWEE I P V+ LSAT+ NA E A WI + H
Sbjct: 166 ----VIFDEIHYMRDPERGVVWEETIAMLPSAVRYAFLSATIPNAREFAEWIVKTHAHPC 221
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
L+ + RP PL Y S + D N+ + N+++ + + V P +DG +
Sbjct: 222 HLVYTDFRPTPLEHYVHPSGGDGVYLCYDRD----NKFRADNFVK-AINAVAPKEDGYAA 276
Query: 390 RRNSRKHADMNSNNIVTSFG---------QHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 440
R + A+ + G + + I+ I R V + D
Sbjct: 277 GRTAHNKANAGDGSGGGGGGGGNNGKAGGEDTAANRDIHKIIRMVVEKNYD--------- 327
Query: 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL 499
P I F F++R C + + L +L DE E ++ L + R P ++ LL
Sbjct: 328 --PCIVFSFSKRECQSMAESLHKLDLCDENEKDVIDTVYWSGLDALKDEDKRLPQVQNLL 385
Query: 500 ----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
+G+ HH+G LPI K +E LFQ G +KV+ ATET++ G+NMPAR V +S K
Sbjct: 386 PLLKRGIGVHHSGMLPILKETVELLFQEGFLKVLIATETMSTGLNMPARCVVFTSPRKYD 445
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 615
+G +TS E QM+GRAGRRG+D+RG VVL+ +L +PL S F
Sbjct: 446 GAGYRWITSGEYVQMSGRAGRRGLDDRGLVVLMMDERMDPAVAKDMLHGRSDPLNSAFHV 505
Query: 616 SYGMVLNLL 624
+YG ++N++
Sbjct: 506 TYGSMINMM 514
>gi|150866387|ref|XP_001385966.2| Dead-box family helicase required for mRNA export from nucleus
[Scheffersomyces stipitis CBS 6054]
gi|149387643|gb|ABN67937.2| Dead-box family helicase required for mRNA export from nucleus
[Scheffersomyces stipitis CBS 6054]
Length = 1068
Score = 285 bits (730), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 174/480 (36%), Positives = 261/480 (54%), Gaps = 37/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I R SV+VSA TS+GKT++AE A ++ +++R+ YT+P+K
Sbjct: 142 ARTYPFILDPFQDTAISCIDRDESVLVSAHTSAGKTVVAEYAIAQSLRDKQRVIYTSPIK 201
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 202 ALSNQKYRELLAEFGD--VGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEIMR------ 253
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D SRG VWEE II P +V + LSAT+ NA E A WI +IH +
Sbjct: 254 EVAWVIFDEVHYMRDKSRGVVWEETIILLPDKVHHVFLSATIPNAMEFAEWIVKIHAQPC 313
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y + + ++DEKG +S + GG
Sbjct: 314 HVVYTDFRPTPLQHYLFPAAGDGIHLVVDEKGTFREENFQKAMASISDA-------GGDD 366
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
+ K S G+ + N +S + +++ ++ R P I F F
Sbjct: 367 PASGDK-----------SKGKKGQTYKGGNKDGKSDIYKIVKMIYMKRYN---PVIVFSF 412
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C++ + + ++ E + L P+A +E P IK +L +G+
Sbjct: 413 SKRDCESLALKMSKLDFNNDDERDALTKIFNNAINLLPEADKELPQIKNILPLLKRGIGI 472
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K G ++
Sbjct: 473 HHSGLLPILKEIIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTSVRKWDGVGFRWVSG 532
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 533 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 592
>gi|399216377|emb|CCF73065.1| unnamed protein product [Babesia microti strain RI]
Length = 988
Score = 285 bits (729), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 172/480 (35%), Positives = 251/480 (52%), Gaps = 50/480 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F++D+FQ SI+ SV+V+A TS+GKT++AE A + + R+ YT+P+K
Sbjct: 67 AKQYKFKLDEFQLRSIQCLENNQSVLVAAHTSAGKTVVAEYAIAMGILYKHRVIYTSPIK 126
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+R+ + F D VGL+TGD +N A +++MTTEILR+MLY+ ++
Sbjct: 127 ALSNQKYRDLSDEFKD--VGLMTGDITLNPTASVMVMTTEILRSMLYRGNELIQ------ 178
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKT 331
++ ++ DE+HY+ D RG VWEE II P V + LSAT++N E A WI +I H
Sbjct: 179 EMKYVIFDEIHYMRDRERGVVWEETIIMLPDTVTFVFLSATLSNTTEFAEWICRIKHQPC 238
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
+I + RP PL Y + + +LDE H N K Y L+T ++P G R
Sbjct: 239 HVIYTDFRPTPLQHYIFPANGDGIFMILDE---HKNFKQQAFYQALAT--LRPSSSGIDR 293
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
++ +R P + + +R P I F F
Sbjct: 294 KQ-----------------------------MRSRANPDIAKIVTMCENRKYTPIIIFCF 324
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAA 504
++ C+A +L+ ++ E E S +E + L D + P +L +G+
Sbjct: 325 SKNECEANATFLKQLDITSESEKSMIEEIFQNAMATLADDDRKLPQAVSILPMLKRGIGI 384
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH G LPI K IE LFQ L++V+F+TET + GINMPA+T V + L K +TS
Sbjct: 385 HHGGLLPIIKEVIEILFQESLIRVLFSTETFSMGINMPAKTVVFTGLKKWDGQTHRIITS 444
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QMAGRAGRRG+D+RG V+++ EE KL L S+F Y M+LNL+
Sbjct: 445 GEYIQMAGRAGRRGLDDRGLVIVMIDESMKIEEMKKLFLGDACRLDSKFYLGYNMLLNLI 504
>gi|336468765|gb|EGO56928.1| hypothetical protein NEUTE1DRAFT_84510 [Neurospora tetrasperma FGSC
2508]
gi|350288944|gb|EGZ70169.1| putative ATP dependent RNA helicase [Neurospora tetrasperma FGSC
2509]
Length = 1066
Score = 285 bits (729), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 199/559 (35%), Positives = 291/559 (52%), Gaps = 69/559 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A Y F++D FQ S+ + R SV+VSA TS+GKT++AE A + +R+ YT+P
Sbjct: 132 EPARTYSFKLDPFQALSVASIEREESVLVSAHTSAGKTVVAEYAIAQCLKKNQRVIYTSP 191
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+R+F+ FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 192 IKALSNQKYRDFQAEFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR---- 245
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V +V DE+HY+ D RG VWEE II P +V+ + LSAT+ NA + A WI +IH +
Sbjct: 246 --EVAWVVFDEIHYMRDKIRGVVWEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHRQ 303
Query: 331 T-ELITSSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKD 385
++ + RP PL YF + +L ++DEKG K N ++ ++
Sbjct: 304 ACHVVYTDFRPTPLQNYFFPAGGKGILLIVDEKGNFKENNFNQAMAMIE----------- 352
Query: 386 GGSRRRNSRKHADMN--SNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 443
+K D N S + +K A ++ + ++I + ++ P
Sbjct: 353 -------EKKGTDSNDWSAKQKGKGKNKKTNKGGEAADEKADIAKIIKMIL---KKNFQP 402
Query: 444 AIWFIFNRRGCD--AAVQYLEDCNLLDECEMSE--VELALKRFRILYPDAVREPAIKGLL 499
I F F++R C+ A N DE M E AL L D P I +L
Sbjct: 403 VIVFNFSKRECEQMALASSSMKFNAPDEENMVNKVFENALAS---LSEDDKNLPQISNIL 459
Query: 500 ----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
KG+ HH+G LPI K IE LFQ GL+KV+FATET + G+NMPART V + ++K
Sbjct: 460 PLLRKGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFTQVTKWD 519
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 615
R LTS+E QMAGRAGRRG+D+RG V+++ E ++ + L S F
Sbjct: 520 GQQRRPLTSSEYIQMAGRAGRRGLDDRGIVIMMVDDKLEPETARAIVVGNQDKLNSAFHL 579
Query: 616 SYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDEL 675
Y MVLNLL ++ +S E ++E+ F + + + + EL
Sbjct: 580 GYNMVLNLL---RIEAISPEY-----------------MLERCFFQFQNAASVPQLEREL 619
Query: 676 CKIQKETDVLTSEISDDAI 694
+Q+E D + I D++I
Sbjct: 620 ISLQQERDAII--IPDESI 636
>gi|429329445|gb|AFZ81204.1| DEAD/DEAH box helicase domain-containing protein [Babesia equi]
Length = 1116
Score = 285 bits (729), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 167/478 (34%), Positives = 251/478 (52%), Gaps = 53/478 (11%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F +D FQ+ +I + VSA TS+GKT+IAE A + + YT+P+KALS
Sbjct: 213 FPFELDDFQKRAIYQLTNLKHIFVSAHTSAGKTVIAEYAIALALTRGEKAIYTSPIKALS 272
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+REF++ FG +VG++TGD + N A LI+TTEILRN+LY+ ++S +
Sbjct: 273 NQKYREFKKKFGAESVGIVTGDVSCNPGASCLIVTTEILRNLLYRGDSVISQ------LG 326
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
V++ DE+HY+SD+SRG VWEE+II PK +Q++ LSATV N E A WIG I K ++
Sbjct: 327 VVIFDEIHYISDLSRGVVWEEVIIMLPKTIQLVMLSATVPNYSEFADWIGNIMQKEVVIV 386
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
++ RP PL Y L++ KG
Sbjct: 387 VTNHRPTPLVHYLYIYNRFFLLVNPKG--------------------------------- 413
Query: 395 KHADMNSNNIVTSFGQHQLSKNSIN--AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
N + T + ++ K +IN + V ++ + L S LP + F FNR
Sbjct: 414 ----FNKDAYHTMYRYSKMIKTTINKKPTFKGHVQKLQKLVKILESEKKLPVVLFCFNRA 469
Query: 453 GCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVRE-PAIKGLLK----GVAAHH 506
C+ + + + NL E S++ L LK + + P ++ ++K G+ HH
Sbjct: 470 KCEVYAKEMPNLNLAYTRAERSKIHLFLKESLSNISEGDKNIPQLRSIIKLLHRGIGIHH 529
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
+G LPI K +E LF +GL+KV+FATET A G+NMPAR+ V +S+ K LT++E
Sbjct: 530 SGLLPIIKEIVEILFSKGLIKVLFATETFAMGVNMPARSVVFTSIYKHDGQKGRYLTASE 589
Query: 567 LFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
QMAGRAGRRG+D+ G V + ++ ++ L S+F +Y M+L +
Sbjct: 590 YTQMAGRAGRRGLDSFGSVYIFCSDDPPDLQDLTAMMIEKSTRLESRFRITYNMLLQI 647
>gi|336464994|gb|EGO53234.1| hypothetical protein NEUTE1DRAFT_73666 [Neurospora tetrasperma FGSC
2508]
Length = 1294
Score = 285 bits (729), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 202/604 (33%), Positives = 296/604 (49%), Gaps = 74/604 (12%)
Query: 79 DDIDDDDDEEAAD---EYDDVSGEVSDEIQQSDDEFE-----------------VSSDSS 118
+D+ + E+A D E D+V+G +E + S D+ E + SS
Sbjct: 230 EDVLGQEPEDAPDGEGERDEVNGVKREESEDSQDDLEDIDAILPVEFPALEPRGTLTASS 289
Query: 119 PAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVV 178
+ RE W + + E+ F E+ V ++A + F +D FQ+ ++ G SV
Sbjct: 290 ARKAGRE---WAHMVDIRREIPNF-REL--VPDMAREWPFELDTFQKEAVYHLENGDSVF 343
Query: 179 VSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDS 238
V+A TS+GKT++AE A + + YT+P+KALSNQKFR+FR+TF + VG+LTGD
Sbjct: 344 VAAHTSAGKTVVAEYAIALAAKHMTKAIYTSPIKALSNQKFRDFRQTF--DEVGILTGDV 401
Query: 239 AINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII 298
IN EA LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+I
Sbjct: 402 QINPEASCLIMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDYERGVVWEEVI 455
Query: 299 IYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLL 357
I P+ V +I LSATV N E A W+G+ K +I++ +RPVPL Y + ++
Sbjct: 456 IMLPEHVSLILLSATVPNTYEFASWVGRTKQKDIYVISTPKRPVPLEHYLWAGKKIHKIV 515
Query: 358 DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS-------RRRNSRKHADMNSNNIVTSFGQ 410
D + K + L + + P S + R A +N
Sbjct: 516 DSEKKFIETGWKEANLAIQGKDKPPKAIEASTGPARGGGNQRGRGGAQRGANQPRGGARG 575
Query: 411 HQLSKNSINAIRRSQVPQVI---------------DTLW-----HLRSRDMLPAIWFIFN 450
+ R S P + LW L+ ++LPA F+F+
Sbjct: 576 GGQQRGRGGPPRASHTPGHMGRTGRPGGFTSAAQDKNLWVHLVQFLKKDNLLPACIFVFS 635
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAI----KGLLKGVAAH 505
++ C+ L + + E S + + ++R L P+ P I + L +G+A H
Sbjct: 636 KKRCEENADALSNQDFCTAQEKSHIHMIIERSIARLKPEDRVLPQIIRLRELLSRGIAVH 695
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
H G LPI K +E LF LVKV+FATET A G+N+P RT V S K L
Sbjct: 696 HGGLLPIVKEMVEILFAETLVKVLFATETFAMGLNLPTRTVVFSGYRKHDGHQFRNLLPG 755
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE-----ECCKLLFAGVEPLVSQFTASYGMV 620
E QMAGRAGRRG+D G V++V P G E + +++ L SQF +Y M+
Sbjct: 756 EYTQMAGRAGRRGLDTVGSVIIV--PPGGDEAPPVTDLRQMILGEPSKLRSQFRLTYNMI 813
Query: 621 LNLL 624
LNLL
Sbjct: 814 LNLL 817
>gi|407276971|ref|ZP_11105441.1| ATP-dependent RNA helicase [Rhodococcus sp. P14]
Length = 771
Score = 285 bits (729), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 179/488 (36%), Positives = 251/488 (51%), Gaps = 54/488 (11%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217
F +D FQ + A V+V APT +GKT++ E A A + FYTTP+KALSNQ
Sbjct: 18 FTLDDFQVRACRALDEDRDVLVCAPTGAGKTVVGEFAVHLARAAGGKCFYTTPIKALSNQ 77
Query: 218 KFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD-VDV 276
K+ + GD VGLLTGD +++ A +++MTTE+LR+ML+ S L D +
Sbjct: 78 KYADLVARLGDEQVGLLTGDVSLDPHAPVVVMTTEVLRSMLH-------GRSPLLDGLTH 130
Query: 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
+V+DEVH+L+D RG VWEE I+Y P V+++ LSATV+NA+E W+G + G T ++
Sbjct: 131 VVMDEVHFLADRERGAVWEEAILYLPAPVRLVSLSATVSNAEEFGAWLGLVRGATTVVVE 190
Query: 337 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH 396
RPVPL + L L ++ L + P RRR S
Sbjct: 191 ETRPVPLHQHVLAGGRLFDLFSPTTGAIDENLVRYVAHRQLVDAAPAVPSRRRRRRSATP 250
Query: 397 ADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456
+ P+++ L + +LPAIWF F+R GCD
Sbjct: 251 GPAGVDR-----------------------PELVA---RLEAESLLPAIWFRFSRSGCDE 284
Query: 457 AVQYLEDCNLLDECEMSEVELALKRFRIL-YPDAVREPA----------IKGLLKGVAAH 505
AV +C L ++E + RI+ A PA + GL +G AAH
Sbjct: 285 AVA---EC-LRSSLRLTEAADVTRIRRIVDRHTAGVSPADLDALGFADWLDGLERGFAAH 340
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG +P+++ +EELF GLV++VFATETLA G+NMPART VL L K TA+G ++LT+
Sbjct: 341 HAGMVPVFRHAVEELFGLGLVRIVFATETLAVGVNMPARTVVLERLVKHTAAGPVRLTAG 400
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL-- 623
E Q+ GRAGRRG+D GH V++ +P L PL S Y +NL
Sbjct: 401 EYTQLTGRAGRRGVDREGHAVVLWSPEVQPATVAGLASTRTYPLNSSLRVGYNTAVNLVD 460
Query: 624 ---LAGAK 628
+AGA+
Sbjct: 461 RLGVAGAR 468
>gi|361127209|gb|EHK99185.1| putative Uncharacterized helicase C6F12.16c [Glarea lozoyensis
74030]
Length = 1078
Score = 285 bits (729), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 190/550 (34%), Positives = 289/550 (52%), Gaps = 57/550 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F +D FQ+ SI + R SV+VSA TS+GKT++AE A + N +R+ YT+P+K
Sbjct: 150 ARTWPFELDPFQKVSIASIERNESVLVSAHTSAGKTVVAEYAIAQCLKNNQRVIYTSPIK 209
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 210 ALSNQKYREFAAEFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR------ 261
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V +V DE+HY+ D SRG VWEE II P +V+ + LSAT+ NA + A WI + H +
Sbjct: 262 EVAWVVFDEIHYMRDKSRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKTHQQPC 321
Query: 332 ELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL YF A + ++DEKG + Q + + ++ K
Sbjct: 322 HIVYTDFRPTPLQHYFFPAGADGIHLIVDEKGNFRE-----DNFQKAMATIEEKKGSDPS 376
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
N+R+ N T+ G ++ + + +R + L H P I F F
Sbjct: 377 DINARQKG--RGKNKKTNTGGNKDTSDIYKIVR-------MIMLKHYN-----PVIVFSF 422
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAA 504
++R C+A + D+ E + V + L + P I+ +L +G+
Sbjct: 423 SKRECEAYALQMSTMAFNDDSEKAMVSKVFESAIESLSEEDKTLPQIQHILPLLRRGIGV 482
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ L+KV+FATET + G+NMPA+T V +S+ K + + LT
Sbjct: 483 HHSGLLPILKETIEILFQENLIKVLFATETFSIGLNMPAKTVVFTSVQKFDGTSQRYLTP 542
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+E QM+GRAGRRG+D+RG V+++ +++ + L S F Y M+LNL+
Sbjct: 543 SEFVQMSGRAGRRGLDDRGIVIMMINDKMDPPTAKEIVRGEQDKLNSAFYLGYNMILNLM 602
Query: 625 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDV 684
+V +S E ++E F + ++ + + +L +Q E D
Sbjct: 603 ---RVEGISPEF-----------------MLEHCFYQFQNTSGVSGLEKDLHDLQIERD- 641
Query: 685 LTSEISDDAI 694
+ EI D+AI
Sbjct: 642 -SVEIPDEAI 650
>gi|363754569|ref|XP_003647500.1| hypothetical protein Ecym_6303 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891137|gb|AET40683.1| hypothetical protein Ecym_6303 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1075
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 175/480 (36%), Positives = 255/480 (53%), Gaps = 36/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I RG SV+VSA TS+GKT++AE A ++ ++R+ YT+P+K
Sbjct: 145 ARTYPFNLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAKSLREKQRVIYTSPIK 204
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 205 ALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 256
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V +V DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH +
Sbjct: 257 EVAWVVFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 316
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y + + ++DEKG +S
Sbjct: 317 HIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGAFREENFQKAMASIS------------- 363
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
S+ D NS N GQ + + + +++ +W + P I F F
Sbjct: 364 ---SQTGDDPNSVNSKGGKGQ-TFKGGAAKGDSKGDIYKIVKMIWKKKYN---PVIVFSF 416
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + + E + K L P+ RE P IK LL +G+
Sbjct: 417 SKRDCEELALKMSKLDFNSDDEKDSLAKIFKNAIDLLPETDRELPQIKHLLPLLKRGIGI 476
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 477 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKQFRWVSG 536
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 537 GEYIQMSGRAGRRGLDDRGVVIMMLDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 596
>gi|320169748|gb|EFW46647.1| RNA helicase [Capsaspora owczarzaki ATCC 30864]
Length = 1332
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 187/503 (37%), Positives = 272/503 (54%), Gaps = 42/503 (8%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V ++A + F++D FQ+ +I + SV ++A TS+GKT+IAE A + + YT
Sbjct: 360 VPDMAYRWPFKLDTFQQQAILLLEKHESVFIAAHTSAGKTVIAEYAIALAAKHLTKAIYT 419
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+FR TF D VGLLTGD I EA ++MTTEILR+MLY+ M+
Sbjct: 420 SPIKALSNQKFRDFRNTFHD--VGLLTGDVQIRPEASCVVMTTEILRSMLYRGADMIR-- 475
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D+ RG VWEE+II P V II LSATV N E AGW+G+
Sbjct: 476 ----DVEWVIFDEVHYVNDVDRGVVWEEVIIMLPPHVNIIMLSATVPNTMEFAGWVGRTK 531
Query: 329 GK-TELITSSRRPVPLTWYF----STKTA--LLPLLDEKGKHMNR--KLSLNYLQLSTSE 379
K +I++ +RPVPL + STKT+ L ++D + K ++ + ++
Sbjct: 532 RKRIHVISTLKRPVPLEHFLYTGNSTKTSNELFKIVDANKNFLQAGYKQAVETIAQRKAQ 591
Query: 380 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW----- 434
+ + GG ++ N+ R + PQ +W
Sbjct: 592 AQDNQQGGGSGGRGGGARGGAAHRGGGGGRGGGGGHFGGNSYRGN--PQQDRNIWMSLIE 649
Query: 435 HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE----VELALKRFR---ILYP 487
L+ + +LP + F F+++ C++ + +L E S +E ++ R R P
Sbjct: 650 MLQKKSLLPMVAFTFSKKRCESNADGILTLDLTTGDEKSAIHVFIENSVSRLRGNDRNLP 709
Query: 488 DAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
+R ++ +L +GVA HH G LPI K +E LFQRGLVKV++ATET A G+NMP RT
Sbjct: 710 QVLR---MRDMLRRGVAVHHGGLLPIIKEMVELLFQRGLVKVLYATETFAMGVNMPTRTV 766
Query: 547 VLSSLSKRTA-SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKL 601
V S K +G L E QMAGRAGRRG+D+ G V+L+ + P G +
Sbjct: 767 VFDSTRKPDGQAGFRDLLPGEYVQMAGRAGRRGLDDTGTVILLVKGDEVPDAGG--LINM 824
Query: 602 LFAGVEPLVSQFTASYGMVLNLL 624
L L S+F +Y M+LNLL
Sbjct: 825 LLGKATTLESRFRLTYNMILNLL 847
>gi|403340622|gb|EJY69602.1| Superfamily II RNA helicase [Oxytricha trifallax]
Length = 1110
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 165/480 (34%), Positives = 256/480 (53%), Gaps = 40/480 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +DKFQ ++E R SV+V+A TS+GKT +AE A + +++R+ YT+P+K
Sbjct: 173 AKEYKFTLDKFQERAVECIERNESVLVAAHTSAGKTAVAEYAIALALNSKQRVIYTSPIK 232
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE +E F D VGL+TGD IN A ++MTTEILR+MLY +
Sbjct: 233 ALSNQKYRELQEEFVD--VGLMTGDVTINESASCIVMTTEILRSMLYNGSEITR------ 284
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
++ ++ DEVHY+ D RG VWEE +I P V+ + LSAT+ NA E A WI +I +
Sbjct: 285 EMAWVIFDEVHYMRDKERGVVWEETMILLPTTVKYVFLSATIPNAREFAEWIVKIKKQPC 344
Query: 332 ELITSSRRPVPLTWYFSTK--TALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL + + ++D+ G+ +K+
Sbjct: 345 SVVYTDYRPTPLQHFIYPMGGEGIYCVVDQNGQ--------------------FKEQNFT 384
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
+ S DMN + I+ + ++N + +Q ++ + + + + P I F F
Sbjct: 385 KAISVLENDMNLDKILDD----KKNRNKTTQQKTTQNSEMKKIITLIVDKGLDPCIVFSF 440
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAA 504
++R C+A L+ C+ + E +++L L + + P I+ +L +G+
Sbjct: 441 SKRDCEAYAMALKGCDFNKDEEKDQIKLIFNNAMSSLAEEDAQLPTIQSMLPLLQRGIGI 500
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH G LPI K IE LFQ GL+K++F TET + GINMPART V +S+ K +T
Sbjct: 501 HHGGLLPIVKEVIELLFQEGLLKILFTTETFSMGINMPARTVVFTSIEKFDGDEYRWITG 560
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG +++ + +L +PL S F Y M+LN++
Sbjct: 561 GEFIQMSGRAGRRGLDDRGVTIMIANKKLEPDVAKNILKGQSDPLYSAFHLGYNMLLNMM 620
>gi|302775370|ref|XP_002971102.1| hypothetical protein SELMODRAFT_441420 [Selaginella moellendorffii]
gi|300161084|gb|EFJ27700.1| hypothetical protein SELMODRAFT_441420 [Selaginella moellendorffii]
Length = 1311
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 185/498 (37%), Positives = 261/498 (52%), Gaps = 45/498 (9%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ ++A + F +DKFQ+ +I + SV V+A TS+GKT++AE A + + R YT
Sbjct: 326 IPDMAIQFPFELDKFQKEAIYHLEKNESVFVAAHTSAGKTVVAEYAFALSAKHCTRAVYT 385
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+K +SNQK+R+F E F +VGLLTGD +I EA LIMTTEILR+MLY+ +V
Sbjct: 386 SPIKTISNQKYRDFSEKF---DVGLLTGDVSIRPEASCLIMTTEILRSMLYKGADLVR-- 440
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ +V DEVHY++D RG VWEE+II P+ V ++ LSATV N E A W+G+
Sbjct: 441 ----DIEWVVFDEVHYVNDAERGVVWEEVIIMLPQHVNLVLLSATVPNIREFADWVGRTK 496
Query: 329 GKTELIT-SSRRPVPL--TWYFS-------TKTALLPLLDEKGKHMNRKLSLNYLQLSTS 378
K +T +++RPVPL ++S LPL G + L +
Sbjct: 497 QKKIYVTGTTKRPVPLEHCLFYSGELHRICANETFLPL----GVKAAKDAHLAKTAVKKG 552
Query: 379 EVKPYKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437
V P + G G+ + N V KNS RS+ Q + L
Sbjct: 553 PVAPTQGGRGNVQGRGGPGGRGGRGNKVIP-----EEKNSRGGPWRSETSQWYGLINVLS 607
Query: 438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRIL---YPDAV 490
+++LP + F F++ CD + L +L E + + A R + P +
Sbjct: 608 KKNLLPVVVFCFSKSRCDQSADSLTGSDLTTSTEKGVIRVFCNKAFSRLKGTDRQLPQVL 667
Query: 491 REPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
R I+ LLK G+ HHAG LPI K +E LF RG++KV+F+TET A G+N PART
Sbjct: 668 R---IEELLKRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVAFH 724
Query: 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGV 606
K QL E QMAGRAGRRG+D G V+++ P EG + +LL
Sbjct: 725 GFRKHDGKSFRQLYPGEYTQMAGRAGRRGLDTVGTVIVMCWDDIPDEG--DLRRLLTGKA 782
Query: 607 EPLVSQFTASYGMVLNLL 624
L SQF +Y M+LNLL
Sbjct: 783 TKLESQFRLTYTMILNLL 800
>gi|85079176|ref|XP_956298.1| ATP-dependent RNA helicase DOB1 [Neurospora crassa OR74A]
gi|28881140|emb|CAD70310.1| probable ATP dependent RNA helicase [Neurospora crassa]
gi|28917356|gb|EAA27062.1| ATP-dependent RNA helicase DOB1 [Neurospora crassa OR74A]
gi|57019005|gb|AAW32908.1| FRQ-interacting RNA helicase [Neurospora crassa]
Length = 1106
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 199/559 (35%), Positives = 291/559 (52%), Gaps = 69/559 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A Y F++D FQ S+ + R SV+VSA TS+GKT++AE A + +R+ YT+P
Sbjct: 172 EPARTYSFKLDPFQALSVASIEREESVLVSAHTSAGKTVVAEYAIAQCLKKNQRVIYTSP 231
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+R+F+ FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 232 IKALSNQKYRDFQAEFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR---- 285
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V +V DE+HY+ D RG VWEE II P +V+ + LSAT+ NA + A WI +IH +
Sbjct: 286 --EVAWVVFDEIHYMRDKIRGVVWEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHRQ 343
Query: 331 T-ELITSSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKD 385
++ + RP PL YF + +L ++DEKG K N ++ ++
Sbjct: 344 ACHVVYTDFRPTPLQNYFFPAGGKGILLIVDEKGNFKENNFNQAMAMIE----------- 392
Query: 386 GGSRRRNSRKHADMN--SNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 443
+K D N S + +K A ++ + ++I + ++ P
Sbjct: 393 -------EKKGTDSNDWSAKQKGKGKNKKTNKGGEAADEKADIAKIIKMIL---KKNFQP 442
Query: 444 AIWFIFNRRGCD--AAVQYLEDCNLLDECEMSE--VELALKRFRILYPDAVREPAIKGLL 499
I F F++R C+ A N DE M E AL L D P I +L
Sbjct: 443 VIVFNFSKRECEQMALASSSMKFNAPDEENMVNKVFENALAS---LSEDDKNLPQISNIL 499
Query: 500 ----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
KG+ HH+G LPI K IE LFQ GL+KV+FATET + G+NMPART V + ++K
Sbjct: 500 PLLRKGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFTQVTKWD 559
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 615
R LTS+E QMAGRAGRRG+D+RG V+++ E ++ + L S F
Sbjct: 560 GQQRRPLTSSEYIQMAGRAGRRGLDDRGIVIMMVDDKLEPETARAIVVGNQDKLNSAFHL 619
Query: 616 SYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDEL 675
Y MVLNLL ++ +S E ++E+ F + + + + EL
Sbjct: 620 GYNMVLNLL---RIEAISPEY-----------------MLERCFFQFQNAASVPQLEREL 659
Query: 676 CKIQKETDVLTSEISDDAI 694
+Q+E D + I D++I
Sbjct: 660 ISLQQERDAII--IPDESI 676
>gi|356569566|ref|XP_003552970.1| PREDICTED: helicase SKI2W-like [Glycine max]
Length = 1342
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 209/620 (33%), Positives = 315/620 (50%), Gaps = 66/620 (10%)
Query: 43 LSSNSIQFQASYKSPKSFFPTEHKLTDADEAADEYDDDIDDDDDEEAADEYDDVSGEVSD 102
LS S+QF +K K D D D+ D + + E E + + EVS
Sbjct: 239 LSGLSVQFDDLFK----------KAWDEDAVGDQEDGHLSEV--ETITLEAEVGTTEVSS 286
Query: 103 EIQQSDDEFE--VSSDSSPAP----SWREEFKWQRVEKLCNEVKEFGNEMID-----VDE 151
+S+ + +S+DS + + +E Q+ E + E +++D V +
Sbjct: 287 RAHESEMSLDDILSADSEGSKLHLDGFNDEIGQQKKEAWA--IHETSEQIVDSFHELVPD 344
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
+A + F +D FQ+ +I +G SV V+A TS+GKT++AE A + R YT P+
Sbjct: 345 MALEFPFELDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPI 404
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
K +SNQK+R+ G +VGLLTGD ++ EA LIMTTEILR+MLY+ ++
Sbjct: 405 KTISNQKYRDL---CGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIR----- 456
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
D++ ++ DEVHY++D+ RG VWEE+II P+ + I+ LSATV N E A WIG+ K
Sbjct: 457 -DIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINIVLLSATVPNTIEFADWIGRTKQKE 515
Query: 332 ELIT-SSRRPVPLT---------WYFSTKTALLPL-LDEKGKHMNRKLSLNYLQLSTSE- 379
+T +++RPVPL + LP L K +RK +L S +
Sbjct: 516 IRVTGTTKRPVPLEHCLFYSGELYKICESEKFLPQGLKAAKKEASRKKNLTAGGGSGPKP 575
Query: 380 -VKPYKDGGS-RRRNSRKHADMNSNNIVTSFGQHQLSKNSIN--AIRRSQVPQVIDTLWH 435
+ P D ++R + H + N + +Q + N + +RR+ ++ +
Sbjct: 576 GISPGHDKARVQKRENTSHTKHHGANFYGTGRGYQNNGNGQSNWELRRADASMLLMLINK 635
Query: 436 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRIL------YPD 488
L + +LP + F F++ CD + L +L E SE+ L K F L P
Sbjct: 636 LSKKSLLPVVIFCFSKNRCDKSADSLTGTDLTSSSEKSEIRLFCDKAFSRLKGSDKNLPQ 695
Query: 489 AVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
VR ++ LL+ G+ HHAG LPI K +E LF RG++KV+F+TET A G+N PART V
Sbjct: 696 VVR---VQNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVV 752
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFA 604
+L K QL + E QMAGRAGRRG+D G V+L+ + P E E ++
Sbjct: 753 FDTLRKFDGKEFRQLLAGEYTQMAGRAGRRGLDKIGTVILMCRDELPEESDLE--PVIVG 810
Query: 605 GVEPLVSQFTASYGMVLNLL 624
L SQF +Y M+L+LL
Sbjct: 811 SATRLESQFRLTYIMILHLL 830
>gi|325182407|emb|CCA16860.1| mCG15924 putative [Albugo laibachii Nc14]
Length = 1436
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 175/480 (36%), Positives = 263/480 (54%), Gaps = 29/480 (6%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
Y F +D FQ+ I +V V+A TS+GKT+IAE A + + R YT+P+KALS
Sbjct: 428 YPFELDTFQKRCIIHLENHENVFVAAHTSAGKTVIAEYAIALSQKHMTRSVYTSPIKALS 487
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+R+FRE FG + VGL+TGD +IN EA LIMTTEILR+MLY M+ D++
Sbjct: 488 NQKYRDFREKFGVDQVGLITGDVSINPEASCLIMTTEILRSMLYLGADMIR------DIE 541
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKTELI 334
++ DE+HY++D RG VWEE+II P V ++ LSAT N E + WIG+I K ++
Sbjct: 542 WVIFDEIHYINDSERGAVWEEVIIMLPYHVGMVFLSATTPNHLEFSDWIGRIKQKKIHVV 601
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
++ RP+PL + T +LD G+H +L + + ++ G + N +
Sbjct: 602 STLHRPIPLQHHIYTNKKFFKILD--GEHAKEGFNLKEYKAAQGLLR----GETPNDNKQ 655
Query: 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454
K A ++ S H +S ++ ++ V L+++ +LPA+ F F++R C
Sbjct: 656 KDAKRSNRGGQPSRSVHSSRASSGDSSDWTKFINV------LQTKSLLPAVVFAFSKRVC 709
Query: 455 DAAVQYLEDCNLL-DECEMSEVELAL-----KRFRILYPDAVREPAIKGLL-KGVAAHHA 507
+ + L + + + E S++ + L +R + + + +IK +L +G+ HH
Sbjct: 710 QESAEKLRNFDFCANSTERSQIHVFLEHSIKQRLQGSDRELPQVLSIKSMLQRGIGIHHG 769
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
G LPI K +E LF RGLV+V+FATET A G+NMPART V + + K +L E
Sbjct: 770 GLLPILKELVEILFARGLVRVLFATETFAMGVNMPARTVVFNGIHKHDGKVYRELLPGEY 829
Query: 568 FQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
QMAGRAGRRG+D G VV+ + +L L SQF + M+L+LL
Sbjct: 830 TQMAGRAGRRGLDTVGTVVIPCWQEANLPDLSLLQSMLTGSALRLTSQFRLTSNMILSLL 889
>gi|399215847|emb|CCF72535.1| unnamed protein product [Babesia microti strain RI]
Length = 1024
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 207/609 (33%), Positives = 316/609 (51%), Gaps = 98/609 (16%)
Query: 38 IPKPLLSSNSIQFQASYKSPKSFFPTEHKLTDADEAA---DEYDDDIDDDDDEEAADEYD 94
IP P SI SP+ P T A+ + DE+D ++ D+ A E
Sbjct: 42 IPVP----GSIPIANLDNSPQIHRPNIDSRTTAEVQSFDFDEFDTNVYTYDN--GAPELY 95
Query: 95 DVSGE--VSDEIQQSDDEFEVSSDSSPAPSWREEFKWQ------RVEKLCNEVKEFGNEM 146
+ G+ +SD ++ ++ + P +E+ Q R+ +L VK+ G +
Sbjct: 96 NFGGQTYISDGLRFK----SITDNKHDYPKCPDEYIKQPKDTKSRLIRLNWAVKDDGPVV 151
Query: 147 -IDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205
I +EL Y F++D FQ+ +I RG V V+A TS+GKT++AE A ++ R+
Sbjct: 152 EIPDNELLIEYPFKLDDFQKKAIYHVSRGKHVFVAAHTSAGKTIVAEYAIAMALSKGRKA 211
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
YT+P+KALSNQK+REF+ F ++VG++TGD N A L+MTTE+LRN+LY+ ++
Sbjct: 212 VYTSPIKALSNQKYREFKNIF--DSVGIITGDICCNPAASCLVMTTEVLRNLLYRGDSLI 269
Query: 266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325
++DV++ DEVHY+SD+SRG VWEE+II PK ++++ LSATV N E + WIG
Sbjct: 270 G------ELDVVIFDEVHYISDLSRGVVWEEVIIMLPKVLRLLMLSATVPNYMEFSDWIG 323
Query: 326 Q-IHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 384
+ + + I + +RP PL Y H++ K N+L ++
Sbjct: 324 RTMQREVVAIVTKKRPTPLVHYL---------------HIHSK---NFLLFNS------- 358
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
DG N N G+ Q + A+ +S L D LP
Sbjct: 359 DG------------FNQN------GEIQ----KLQALIKS-----------LEQNDKLPV 385
Query: 445 IWFIFNRRGCDAAVQYLEDCNLLD-ECEMSEVELALKRFRILYPDAVRE-PAIKGLL--- 499
I F F+R C+ + + +L + E S++ L +K D R P +K ++
Sbjct: 386 ILFSFSRAKCETYAKCMPKLDLSKTQSERSKIHLFIKESLETLSDTDRNIPQLKFIISLL 445
Query: 500 -KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+GV HH+G LPI K +E LF RGLVKV+FATET A G+NMPAR+ V +S+ K
Sbjct: 446 ERGVGVHHSGLLPIIKEIVEILFSRGLVKVLFATETFAMGVNMPARSVVFTSIRKHDGLK 505
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVL--VQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
LTS+E QMAGRAGRRG+D+ G+V + V +P + ++ +L PL S+F +
Sbjct: 506 NRILTSSEYTQMAGRAGRRGLDSVGNVFIFCVDSPPD-LQDLTMMLIEKSTPLKSRFRIT 564
Query: 617 YGMVLNLLA 625
Y M+L +++
Sbjct: 565 YSMLLQVMS 573
Score = 42.0 bits (97), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 13/169 (7%)
Query: 980 GWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQL 1039
+ E + NV+ + LD + V G A I +E+ L VL IL +L P +
Sbjct: 828 AYPEMMARVNVLKQMGFLD-SENVPTIKGRVATYITTTDEITLTQVLFQNILKELDPPEC 886
Query: 1040 AAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI-NVLDEHRSSFLELQEKHGVEIPC-- 1096
AA+ ++ +S + N P+ + N N+ + HR ++ LQ G+ P
Sbjct: 887 AAILSAFISTD------RCNDEAPIPTLKLQNARDNIFEIHRKIYI-LQNSLGIHTPIED 939
Query: 1097 -CLDSQFS-GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 1143
L FS + WA G + E+M L +G++ R + R +L ++
Sbjct: 940 FDLLCNFSLQICYQWACGSPFPEIMEMTTLQEGNIVRAIIRLEELCKKV 988
>gi|308805252|ref|XP_003079938.1| ATP-dependent RNA helicase, putative (ISS) [Ostreococcus tauri]
gi|116058395|emb|CAL53584.1| ATP-dependent RNA helicase, putative (ISS) [Ostreococcus tauri]
Length = 1018
Score = 285 bits (728), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 189/555 (34%), Positives = 275/555 (49%), Gaps = 70/555 (12%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ+ ++E R SV+VSA TS+GKT++AE A + + +R+ YT+PLK
Sbjct: 75 AKSYPFELDTFQQKAVEVLERKESVLVSAHTSAGKTVVAEYAIAMAIRDGQRVVYTSPLK 134
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE RE F D VGL+TGD IN A L+MTTE+LR+MLY+ G V E G
Sbjct: 135 ALSNQKYRELREEFED--VGLMTGDVVINPSASCLVMTTEVLRSMLYKG-GEVMREVGW- 190
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
++ DE+HY+ D RG VWEE I+ P V+ + LSAT+ NA E A W+ + H +
Sbjct: 191 ----VIYDEIHYMRDSERGVVWEESIVLLPDMVKYVFLSATIPNAREFAEWVCKTHNQPC 246
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS- 388
++ + RP PL Y + + ++D + + +S S GG+
Sbjct: 247 HIVYTDFRPTPLEHYIFPANGEGIFLVMDRQSNFRDSNFEQAVTVISDS-------GGTA 299
Query: 389 -RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
R +R D N V + + + R+ P I F
Sbjct: 300 AARVANRGRGDDGKNEAVNQ--------------------DIFKIIRMVVERNYDPVIVF 339
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVEL-------ALKRFRILYPDAVREPAIKGLLK 500
FN+ C+ L +L D+ E ++ AL P P + L +
Sbjct: 340 AFNKHECEKMANSLHKVDLCDDDEKKLIDTIYWNAMDALSEEDKRLPQVANLPNL--LRR 397
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+ HH+G LPI K IE LFQ GL+KV+FATET++ G+NMPART V S K +G
Sbjct: 398 GLGVHHSGLLPILKEVIEILFQEGLIKVLFATETMSVGLNMPARTVVFCSPRKFDGAGFR 457
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
+TS E QM+GRAGRRG D+RG V+L+ +L + L S F +Y M+
Sbjct: 458 WITSGEYIQMSGRAGRRGKDDRGLVILMMDERMDPPVAKNMLHGQSDTLDSAFRLNYAMI 517
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
LNL+ +V ES L++ SF + + + ++ +I+K
Sbjct: 518 LNLM---RVEGADPES-----------------LIQSSFAQFQNDRALPGIEAKIVEIEK 557
Query: 681 ETDVLTSEISDDAID 695
E D + E ++A+D
Sbjct: 558 ERDAVHIE-DENAVD 571
>gi|401404381|ref|XP_003881710.1| putative DEAD/DEAH box helicase domain-containing protein [Neospora
caninum Liverpool]
gi|325116123|emb|CBZ51677.1| putative DEAD/DEAH box helicase domain-containing protein [Neospora
caninum Liverpool]
Length = 1366
Score = 284 bits (727), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 174/451 (38%), Positives = 250/451 (55%), Gaps = 25/451 (5%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
LA + F +D FQ+ +I + +V V+A TS+GKT++AE A V RR YT+PL
Sbjct: 466 LALEFPFPLDDFQKRAILHLEKYQTVFVAAHTSAGKTVVAEYAIALAVRRNRRCIYTSPL 525
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+REFR F +VG++TGD IN +A LI+TTEILR++LY ++
Sbjct: 526 KALSNQKYREFRLKF--PSVGIVTGDVCINPDANCLIVTTEILRSLLYLGDALIGQ---- 579
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
VD ++ DE HY++DI RG VWEE II PKEV +I LSAT+ N + A WIG + +
Sbjct: 580 --VDSVIFDEAHYINDIERGVVWEEAIILLPKEVNMILLSATLPNYRQFADWIGAVKQRE 637
Query: 332 EL-ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQL-----STSEVKPYKD 385
+++ RRP PL + L+D KG+ + + + + KP +
Sbjct: 638 VFTLSTDRRPTPLRHFLFFHDKAFLLMDAKGRFQAGAYNEAFKHVRDKGNPPAARKPPLN 697
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKN---SINAIRRSQVPQVIDTLWHLRSRDML 442
+R + ++ G HQ SK + A ++++ ++ + L + L
Sbjct: 698 NAPQRGRGGARGGARATSVQD--GAHQSSKGVYQTAEAKLKTEIHRLQGMIAKLEKDNEL 755
Query: 443 PAIWFIFNRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVRE-PAIKGLL- 499
P + F F+RR C+ Q + N+ L + S++ L +K + A RE P I+ +
Sbjct: 756 PVVVFCFSRRKCETYAQAMRKLNVVLSHNDRSKIHLFVKDCLMALSPADRELPQIRFVCS 815
Query: 500 ---KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
+GV HH G LPI K +E LFQRGLV+V+FATETLA G+NMPAR+ V S+L K
Sbjct: 816 LVQRGVGIHHGGLLPIIKEMVEILFQRGLVRVLFATETLAIGLNMPARSVVFSALKKHDG 875
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVL 587
L ++E QMAGRAGRRGID GHV +
Sbjct: 876 QRSRMLLASEYTQMAGRAGRRGIDTFGHVYI 906
>gi|301107962|ref|XP_002903063.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262098181|gb|EEY56233.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 1049
Score = 284 bits (727), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 251/480 (52%), Gaps = 34/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ+ +++ G SV+VSA TS+GKT +AE A ++ +++R+ YT+P+K
Sbjct: 122 AKTYPFTLDPFQQQAVDYIESGESVLVSAHTSAGKTAVAEYAIAKSLRDKQRVIYTSPIK 181
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+R+ E FGD VGL+TGD IN A LIMTTEILR+MLY+ ++
Sbjct: 182 ALSNQKYRDLEEEFGD--VGLMTGDITINPSATCLIMTTEILRSMLYRGSEVMR------ 233
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HY+ D RG VWEE II P +V+ + LSAT+ N+ E AGWI IH +
Sbjct: 234 EVAWVIYDEIHYMRDKERGVVWEESIILLPHKVRFVFLSATIPNSKEFAGWICHIHHQPC 293
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y + + L ++DEKGK LS S + S
Sbjct: 294 HVVYTDYRPTPLQHYLFPAGGSGLHLVVDEKGKFREDNFQKAIATLSASTDDAAAELASY 353
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
N+++ SN K + V + + R P I F F
Sbjct: 354 GSNTKRRKAQKSN-----------PKKKVGT-------DVFRIVKLIMERQYDPVIIFSF 395
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+A + + E E V+ K D R P + +L +G+
Sbjct: 396 SKRECEAYALLMSKLDFNTEEEKQSVDQLFKNAMDSLSDDDRALPQVDSILPLLRRGIGI 455
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH G LPI K IE LF GL+K +FATET + G+NMPA+T V ++ K +T+
Sbjct: 456 HHGGLLPILKEVIEILFGEGLLKCLFATETFSMGLNMPAKTVVFTNCRKYDGKDFRWITA 515
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRR +D RG V+ + + + +L+ +PL S F Y M+LNL+
Sbjct: 516 GEYIQMSGRAGRRSLDARGIVIQMLSEQMEPQVAKGILYGQADPLFSTFHLGYNMLLNLM 575
>gi|452822286|gb|EME29307.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 1249
Score = 284 bits (727), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 176/482 (36%), Positives = 266/482 (55%), Gaps = 56/482 (11%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F++D FQ+ I R +V V+A TS+GKT+IAE A + +Q R YT+P+K
Sbjct: 346 ARTFPFKLDDFQKRGILHLEREENVFVTAHTSAGKTVIAEYAIALAIQHQTRAIYTSPIK 405
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
+LSNQK+R+F + F D VG++TGD +I+ EA LIMTTEILR+MLY+ ++
Sbjct: 406 SLSNQKYRDFLDNFRD--VGIVTGDVSIHPEASCLIMTTEILRSMLYKGADLIR------ 457
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH-GKT 331
D++ ++ DEVHY++D RG VWEE+II P +++I LSATV NA + A W+G I K
Sbjct: 458 DIEFVIFDEVHYINDEERGVVWEEVIIMLPSYIKLIMLSATVPNAMDFAKWVGAIRKSKV 517
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
++ + RPVPL + L L+ +GK M TS K K+
Sbjct: 518 FVVGTHLRPVPLQHCIFFRKHLYTLVTAEGKFM------------TSVYKQLKELA---- 561
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
K+ + S++I TS G H + +++L +++PA+ F F +
Sbjct: 562 ---KYKMIPSSDIRTS-GAHPWR----------------ELVYYLNESNLVPAVIFCFAK 601
Query: 452 RGCDAAVQYLEDCNL-LDECE----MSEVELALKRFRI---LYPDAVREPAIKGLLKGVA 503
+ CD L + +L +D E +S ++ ++ R + + P R + L +G+
Sbjct: 602 KRCDELANLLSNVDLTIDSSEKFHIISFIDKSISRLQAEDRIIPQIERLREM--LSRGIG 659
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HHAG +P+ K +E LFQ+G V+V+FATET A G+NMPA+T + SS+ K +
Sbjct: 660 IHHAGIIPLMKEVVEILFQKGFVRVLFATETFAMGVNMPAKTVIFSSIRKHDGRKFRWMQ 719
Query: 564 SNELFQMAGRAGRRGIDNRGHVVL-VQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
E QMAGRAGRRGID+ G V+L ++ K++ L+SQF +Y M+LN
Sbjct: 720 PGEYIQMAGRAGRRGIDSVGTVLLFLEEDLPEMNILRKVMIGQPVNLLSQFRLTYNMILN 779
Query: 623 LL 624
LL
Sbjct: 780 LL 781
>gi|366988167|ref|XP_003673850.1| hypothetical protein NCAS_0A09110 [Naumovozyma castellii CBS 4309]
gi|342299713|emb|CCC67469.1| hypothetical protein NCAS_0A09110 [Naumovozyma castellii CBS 4309]
Length = 1064
Score = 284 bits (727), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 174/480 (36%), Positives = 254/480 (52%), Gaps = 36/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I RG SV+VSA TS+GKT++AE A ++ ++R+ YT+P+K
Sbjct: 135 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLREKQRVIYTSPIK 194
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 195 ALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 246
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V +V DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH +
Sbjct: 247 EVAWVVFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHTQPC 306
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ ++ RP PL Y + + ++DEK +ST E
Sbjct: 307 HIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISTQE---------- 356
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
D NS N GQ + + + +++ +W + P I F F
Sbjct: 357 ------GDDPNSINSRGKKGQ-TFKGGAAKGDAKGDIYKIVKMIWKKKYN---PVIVFSF 406
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + E E + L P+ RE P IK +L +G+
Sbjct: 407 SKRDCEELALKMSKLDFNSEDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 466
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 467 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 526
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 527 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 586
>gi|328353048|emb|CCA39446.1| ATP-dependent RNA helicase DOB1 [Komagataella pastoris CBS 7435]
Length = 1064
Score = 284 bits (727), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 183/541 (33%), Positives = 281/541 (51%), Gaps = 44/541 (8%)
Query: 94 DDVSGEVSDEIQQSDDEFEVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELA 153
DDV E S E+ S S+D + + + Q + G + A
Sbjct: 80 DDVEIEASREVAASSGLMGTSTDGPQPLKLKHQVRHQVALPTDYKYTPIGQH--ERTNEA 137
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
Y F +D FQ +SI R SV+VSA TS+GKT++AE A ++ ++R+ YT+P+KA
Sbjct: 138 RTYPFTLDPFQDTSISCIDRNESVLVSAHTSAGKTVVAEYAIAQSLREKQRVIYTSPIKA 197
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD 273
LSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++ +
Sbjct: 198 LSNQKYRELLAEFGD--VGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEVMR------E 249
Query: 274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TE 332
V ++ DEVHY+ D +RG VWEE II P +V + LSAT+ NA E A WI IH +
Sbjct: 250 VAWVIFDEVHYMRDKARGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWICTIHSQPCH 309
Query: 333 LITSSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ + RP PL Y + + ++DEK + N + +++ + + E +G
Sbjct: 310 VVYTDFRPTPLQHYLFPAGGDGIHLVVDEKSNFREENFQKAMSTISDKSGEDSGAVNGKG 369
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
++ S K NS +S + +++ +W + P I F
Sbjct: 370 KKGESFKGGPNNS---------------------KSDIYKIVKMIW---IKKYNPVIVFS 405
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVA 503
F++R C++ + + + E + + + L PDA ++ P IK +L +G+
Sbjct: 406 FSKRDCESLALKMSKLDFNTDEERTALTKIFENAIGLLPDADKDLPQIKHILPLLRRGIG 465
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K G ++
Sbjct: 466 IHHSGLLPILKEIIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKGFRWVS 525
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL
Sbjct: 526 GGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNL 585
Query: 624 L 624
+
Sbjct: 586 M 586
>gi|167377514|ref|XP_001734425.1| helicase [Entamoeba dispar SAW760]
gi|165904038|gb|EDR29400.1| helicase, putative [Entamoeba dispar SAW760]
Length = 977
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 183/485 (37%), Positives = 248/485 (51%), Gaps = 56/485 (11%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A Y F +D FQR SI + SV+VSA TS+GKT +AE A + + N +R+ YT+P
Sbjct: 87 EPAKTYPFTLDDFQRLSISCIGQNESVLVSAHTSAGKTAVAEYAIASALKNNQRVIYTSP 146
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+R+ +E F D VGL+TGD IN EA L+MTTEILRNMLY+ ++
Sbjct: 147 IKALSNQKYRDLQEQFTD--VGLITGDITINEEASCLVMTTEILRNMLYRGNDVMR---- 200
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V ++ DEVHY+ D RG VWEE II P V + LSAT+ NA E A WI IH +
Sbjct: 201 --EVAWVIFDEVHYMRDKERGVVWEESIILLPDTVHYVFLSATIPNAFEFASWISNIHKQ 258
Query: 331 T-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y L P N + L + +++ G
Sbjct: 259 VCHVVYTDYRPTPLCHY------LFP------------AGGNGIYLVVDKECKFREEG-- 298
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR--SQVPQVIDTLWHLRSRDMLPAIWF 447
N +T+ G L I R+ + P VI + + ++ P I F
Sbjct: 299 -----------FNKALTTLG---LDAVGIKTTRKQMNNKPDVIKIITMIMKNNLAPVIIF 344
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF----RILYPDAVREPAIKG----LL 499
FNR+ + + CN +D E + K F + L + + I LL
Sbjct: 345 SFNRKELEIMAK---TCNRMDLTSDDEKTIIGKIFNNAIQCLNAEDRKLEQITELLPLLL 401
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
KGV HH+G LPI K +E LFQ GL+K +FATET A G+NMPART V + + K
Sbjct: 402 KGVGMHHSGLLPIMKETVEILFQEGLIKCLFATETFAMGLNMPARTVVFTKVKKYDGKET 461
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
L E QM+GRAGRRG D +G V+L+ ++F +PL S F Y M
Sbjct: 462 RYLRPGEYIQMSGRAGRRGKDEQGTVILMVDQKIEPTVLKNMIFGKADPLTSSFYLGYNM 521
Query: 620 VLNLL 624
VLNL+
Sbjct: 522 VLNLM 526
>gi|85118702|ref|XP_965488.1| hypothetical protein NCU01857 [Neurospora crassa OR74A]
gi|28927298|gb|EAA36252.1| hypothetical protein NCU01857 [Neurospora crassa OR74A]
Length = 1294
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 201/604 (33%), Positives = 296/604 (49%), Gaps = 74/604 (12%)
Query: 79 DDIDDDDDEEAAD---EYDDVSGEVSDEIQQSDDEFE-----------------VSSDSS 118
+D+ + E+A D E D+V+G +E + + D+ E + SS
Sbjct: 230 EDVLGQEPEDAPDGEGERDEVNGVKREESEDNQDDLEDIDAILPVEFPALEPRGTLAASS 289
Query: 119 PAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVV 178
+ RE W + + E+ F E+ V ++A + F +D FQ+ ++ G SV
Sbjct: 290 ARKAGRE---WAHMVDIRREIPNF-REL--VPDMAREWPFELDTFQKEAVYHLENGDSVF 343
Query: 179 VSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDS 238
V+A TS+GKT++AE A + + YT+P+KALSNQKFR+FR+TF + VG+LTGD
Sbjct: 344 VAAHTSAGKTVVAEYAIALAAKHMTKAIYTSPIKALSNQKFRDFRQTF--DEVGILTGDV 401
Query: 239 AINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII 298
IN EA LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+I
Sbjct: 402 QINPEASCLIMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDYERGVVWEEVI 455
Query: 299 IYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLL 357
I P+ V +I LSATV N E A W+G+ K +I++ +RPVPL Y + ++
Sbjct: 456 IMLPEHVSLILLSATVPNTYEFASWVGRTKQKDIYVISTPKRPVPLEHYLWAGKKIHKIV 515
Query: 358 DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS-------RRRNSRKHADMNSNNIVTSFGQ 410
D + K + L + + P S + R A +N
Sbjct: 516 DSEKKFIETGWKEANLAIQGKDKPPKAIEASTGPARGGGNQRGRGGAQRGANQPRGGARG 575
Query: 411 HQLSKNSINAIRRSQVPQVI---------------DTLW-----HLRSRDMLPAIWFIFN 450
+ R S P + LW L+ ++LPA F+F+
Sbjct: 576 GGQQRGRGGPPRASHTPGHMGRTGRPGGFTSAAQDKNLWVHLVQFLKKDNLLPACIFVFS 635
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAI----KGLLKGVAAH 505
++ C+ L + + E S + + ++R L P+ P I + L +G+A H
Sbjct: 636 KKRCEENADALSNQDFCTAQEKSHIHMIIERSIARLKPEDRVLPQIIRLRELLSRGIAVH 695
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
H G LPI K +E LF LVKV+FATET A G+N+P RT V S K L
Sbjct: 696 HGGLLPIVKEMVEILFAETLVKVLFATETFAMGLNLPTRTVVFSGYRKHDGHQFRNLLPG 755
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE-----ECCKLLFAGVEPLVSQFTASYGMV 620
E QMAGRAGRRG+D G V++V P G E + +++ L SQF +Y M+
Sbjct: 756 EYTQMAGRAGRRGLDTVGSVIIV--PPGGDEAPPVTDLRQMILGEPSKLRSQFRLTYNMI 813
Query: 621 LNLL 624
LNLL
Sbjct: 814 LNLL 817
>gi|440798984|gb|ELR20045.1| hypothetical protein ACA1_113910 [Acanthamoeba castellanii str.
Neff]
Length = 1345
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 191/534 (35%), Positives = 281/534 (52%), Gaps = 65/534 (12%)
Query: 102 DEIQQSDDEFEVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRID 161
D + DD V + AP R++ +W ++ ++V F E I V E+A Y F +D
Sbjct: 350 DHLLGEDDLLSVLRRPTGAPRKRKD-EWAIMDN--SDVSNF--EEI-VPEMALEYPFDLD 403
Query: 162 KFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFRE 221
FQ+ ++ G SV V+A TS+GKT++AE A + R YT+P+KALSNQK+R+
Sbjct: 404 VFQKRAVCHLENGESVFVAAHTSAGKTVVAEYAIALASKHMTRTIYTSPIKALSNQKYRD 463
Query: 222 FRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDE 281
F+ETFGD VGL+TGD +I EA LI+TTEILR+MLY+ ++ DV+ ++ DE
Sbjct: 464 FKETFGD--VGLITGDVSIKPEASCLILTTEILRSMLYRGADLIR------DVEWVIFDE 515
Query: 282 VHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE-LITSSRRP 340
VHY++DI RG VWEE+II P V +I LSATV N E A WIG+ K +IT+++RP
Sbjct: 516 VHYVNDIERGVVWEEVIIMLPDHVNLILLSATVPNTLEFADWIGRTKKKNIFVITTNKRP 575
Query: 341 VPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMN 400
VPL Y ++D + N+L + Y+ + + +
Sbjct: 576 VPLEHYLWVSNERYKIVDNRS---------NFL------MGGYQSAMQAAKQKQTKSAGA 620
Query: 401 SNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQY 460
+ + G Q +R++ ++ID LR + +LP + F F+++ C+
Sbjct: 621 TAKAARASGVKQ---------QRTKWVKMID---QLRVKGLLPVVVFAFSKKKCEDVAHG 668
Query: 461 LEDCNLLDECEMSEV----ELALKRFR---ILYPDAVREPAIKGLLK-GVAAHHAGCLPI 512
L +L E E+ E AL R + P +R IK LLK G+ HH G LPI
Sbjct: 669 LTSTDLTTSVEKHEIHVFMEAALDRLKGPDRKLPQVLR---IKDLLKRGIGVHHGGLLPI 725
Query: 513 WKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAG 572
K +E LF RG +KV+FATET A G+NMPART V ++ K +L
Sbjct: 726 IKEMVEILFGRGKIKVLFATETFAMGVNMPARTVVFENVQKHDGRAFREL---------- 775
Query: 573 RAGRRGIDNRGHVVLV--QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
AGRRG+D G V+++ + + + ++ + L SQF +Y M+LNLL
Sbjct: 776 HAGRRGLDTVGTVIIMTKEDKFPPSAGLQTMILGKPQKLESQFRLTYNMILNLL 829
>gi|413953571|gb|AFW86220.1| hypothetical protein ZEAMMB73_184778 [Zea mays]
Length = 1000
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 181/525 (34%), Positives = 271/525 (51%), Gaps = 54/525 (10%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
D E A + F++D FQ +I G SV+VSA TS+GKT++A A ++ NQ+R+ Y
Sbjct: 71 DASEPAKKFPFQLDPFQAEAIRCLDNGESVMVSAHTSAGKTVVALYAIAMSLRNQQRVIY 130
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
T+P+KALSNQK+REF+E F D VGL+TGD I A L+MTTEI R+M Y+ ++
Sbjct: 131 TSPIKALSNQKYREFKEEFSD--VGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEVMR- 187
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
+V ++ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++
Sbjct: 188 -----EVAWVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKV 242
Query: 328 HGK-TELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 384
H + ++ + RP PL Y S L ++DEKGK + Q + + + P
Sbjct: 243 HKQPCHIVYTDYRPTPLQHYVFPSGGDGLYLVVDEKGKFRE-----DSFQKALNALVPAS 297
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
D ++ N ++ + ++ S S+ + + + R P
Sbjct: 298 DSAKKKENGKRQ-------------KFTMAGTS------SEESDIFKMVKMIIQRQYDPV 338
Query: 445 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL---- 499
I F F++R C+ + +L ++ E + +E +L D + P + +L
Sbjct: 339 ILFSFSKRECEFLAMQMAKMDLNEDDEKANIETIFWSAMDMLSDDDKKLPQVSNMLPLLK 398
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+G+ HH+G LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K
Sbjct: 399 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRF 458
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
L+S E QM+GRAGRRGID RG +L+ +L + L S F SY M
Sbjct: 459 RWLSSGEYIQMSGRAGRRGIDLRGICILMVDEKMEPSTAKMMLKGSADSLNSAFHLSYNM 518
Query: 620 VLNLLAGAKVMHLSNESDDMKAL-------QAGRSLEEARKLVEQ 657
+LN + S + D K L QA RSL + K +++
Sbjct: 519 LLNQMR-------SEDGDPEKLLRHSFYQFQADRSLPDLEKQIKE 556
>gi|449708424|gb|EMD47888.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica KU27]
Length = 977
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 178/487 (36%), Positives = 250/487 (51%), Gaps = 60/487 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A Y F +D FQR S+ + SV+VSA TS+GKT +AE A + + N +R+ YT+P
Sbjct: 87 EPAKTYPFTLDDFQRLSVSCIGQNESVLVSAHTSAGKTAVAEYAIASALKNNQRVIYTSP 146
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+R+ +E F D VGL+TGD IN EA L+MTTEILRNMLY+ ++
Sbjct: 147 IKALSNQKYRDLQEQFTD--VGLITGDITINEEASCLVMTTEILRNMLYRGNDVMR---- 200
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V ++ DEVHY+ D RG VWEE II P V + LSAT+ NA E A WI IH +
Sbjct: 201 --EVAWVIFDEVHYMRDKERGVVWEESIILLPDTVHYVFLSATIPNAFEFASWIANIHKQ 258
Query: 331 T-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y L G N + L + +++ G
Sbjct: 259 ACHVVYTDYRPTPLCHY---------LFPAGG---------NGIYLVVDKECKFREEG-- 298
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
N +TS G + + + + + P VI + + ++ P I F F
Sbjct: 299 -----------FNKALTSLGLDAVGIKTTSK-QMNNKPDVIKIITMVMKNNLAPVIVFSF 346
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVR------------EPAIKG 497
NR+ + + CN +D E + K F +A++ +
Sbjct: 347 NRKELEVMAK---TCNRMDLTSDDEKTIIAKIFN----NAIQCLNAEDRKLEQITELLPL 399
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
LLKGV HH+G LPI K +E LFQ GL+K +FATET A G+NMPART V +++ K
Sbjct: 400 LLKGVGMHHSGLLPIMKETVEILFQEGLIKCLFATETFAMGLNMPARTVVFTNVKKYDGK 459
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
L E QM+GRAGRRG D++G V+L+ ++F +PL S F Y
Sbjct: 460 ETRYLRPGEYIQMSGRAGRRGKDDQGTVILMVDQKIEPTVLKNMIFGKADPLTSSFYLGY 519
Query: 618 GMVLNLL 624
M+LNL+
Sbjct: 520 NMLLNLM 526
>gi|320580337|gb|EFW94560.1| Dead-box family helicase [Ogataea parapolymorpha DL-1]
Length = 1045
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 184/484 (38%), Positives = 267/484 (55%), Gaps = 48/484 (9%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ +SI R SV+VSA TS+GKT++AE A ++ +++R+ YT+P+K
Sbjct: 121 ARTYPFTLDPFQDTSISCIDRQESVLVSAHTSAGKTVVAEYAIAQSLRDKQRVIYTSPIK 180
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE + FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 181 ALSNQKYRELQADFGD--VGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEIMR------ 232
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D SRG VWEE II P V + LSAT+ NA E A WI ++H +
Sbjct: 233 EVAWVIFDEVHYMRDKSRGVVWEETIILLPDNVHHVFLSATIPNAMEFAEWICKVHNQPC 292
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
++ + RP PL Y L P D +G H L E G R
Sbjct: 293 HVVYTDFRPTPLQHY------LFP-ADGEGIH-----------LVVDE-----KGTFREE 329
Query: 392 NSRKHADMNSNNIVTSFG--QHQLSKNSINAIR--RSQVPQVIDTLWHLRSRDMLPAIWF 447
N +K SN + G + + K+ ++ +S + +++ +W + P I F
Sbjct: 330 NFQKAMASISNKMGDDPGAIETKNGKSWKGGVKEGKSDIYKIVKMIWMKKYN---PVIVF 386
Query: 448 IFNRRGCDAAVQYLE--DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KG 501
F++R C+A + D N +E EM ++ IL D P IK +L +G
Sbjct: 387 SFSKRDCEALAMKMSKLDFNTDEEREML-TKIFNNAISILSDDDKELPQIKHILPLLRRG 445
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+ HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K +G
Sbjct: 446 IGIHHSGLLPILKEIIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGNGFRW 505
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV-EPLVSQFTASYGMV 620
++ E QM+GRAGRRG+D+RG +V++ + + K + GV + L S F Y M+
Sbjct: 506 VSGGEYIQMSGRAGRRGLDDRG-IVIMMIDEKMEPQVAKGMVKGVADRLDSAFHLGYNMI 564
Query: 621 LNLL 624
LNL+
Sbjct: 565 LNLM 568
>gi|320037994|gb|EFW19930.1| ATP-dependent RNA helicase DOB1 [Coccidioides posadasii str.
Silveira]
Length = 1074
Score = 284 bits (726), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 196/573 (34%), Positives = 306/573 (53%), Gaps = 72/573 (12%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F++D FQ+ SI + RG SV+VSA TS+GKT++AE A + N +R+ YT+P+K
Sbjct: 146 ARTWPFKLDPFQQVSIASIERGESVLVSAHTSAGKTVVAEYAIAHCLKNNQRVIYTSPIK 205
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 206 ALSNQKYREFASEFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR------ 257
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI + H +
Sbjct: 258 EVAWVVFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKTHNQPC 317
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL Y + + +++EKG K N + ++ G
Sbjct: 318 HVVYTDFRPTPLQHYLFPAGGEGIFLVVNEKGNFKEENFQKAM---------------GA 362
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+ AD N+ + S V +++ + ++S + P I F
Sbjct: 363 IADKKGDDPADANARGKGKGKNKKTNKGGEKGP---SDVFKIVRMIM-MKSYN--PVIVF 416
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF----RILYPDAVREPAIKGLL---- 499
F++R C+A L++ + D+ SE E+ K F +L + + P I+ +L
Sbjct: 417 SFSKRECEAHALTLKNLSFNDD---SEKEMVTKVFNSAIEMLSDEDKKLPQIENILPLLR 473
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+G+ HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +++ K + +
Sbjct: 474 RGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTNVRKFDGTSQ 533
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
LT +E QM+GRAGRRG+D+RG V+++ +++ + L S F Y M
Sbjct: 534 RWLTPSEFVQMSGRAGRRGLDDRGIVIMMVNEEMDPTVVKEIVRGEQDKLNSAFYLGYNM 593
Query: 620 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 679
+LNLL +V +S E ++E+ F + ++ + + EL ++
Sbjct: 594 ILNLL---RVEGISPEF-----------------MLERCFAQFQSASSVGTLEKELEDLE 633
Query: 680 KETDVLTSEISDDAIDRK---SRRLLSEAAYKE 709
+ + +T ISD+ R+ SR+LL A Y E
Sbjct: 634 NQRENMT--ISDEGTIREYYDSRQLL--ATYNE 662
>gi|67472639|ref|XP_652111.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56468924|gb|EAL46725.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
Length = 977
Score = 284 bits (726), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 179/483 (37%), Positives = 250/483 (51%), Gaps = 52/483 (10%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A Y F +D FQR S+ + SV+VSA TS+GKT +AE A + + N +R+ YT+P
Sbjct: 87 EPAKTYPFTLDDFQRLSVSCIGQNESVLVSAHTSAGKTAVAEYAIASALKNNQRVIYTSP 146
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+R+ +E F D VGL+TGD IN EA L+MTTEILRNMLY+ ++
Sbjct: 147 IKALSNQKYRDLQEQFTD--VGLITGDITINEEASCLVMTTEILRNMLYRGNDVMR---- 200
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V ++ DEVHY+ D RG VWEE II P V + LSAT+ NA E A WI IH +
Sbjct: 201 --EVAWVIFDEVHYMRDKERGVVWEESIILLPDTVHYVFLSATIPNAFEFASWIANIHKQ 258
Query: 331 T-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y L G N + L + +++ G
Sbjct: 259 ACHVVYTDYRPTPLCHY---------LFPAGG---------NGIYLVVDKECKFREEG-- 298
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
N +TS G + + + + + P VI + + ++ P I F F
Sbjct: 299 -----------FNKALTSLGLDAVGIKTTSK-QMNNKPDVIKIITMVMKNNLAPVIVFSF 346
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRF----RILYPDAVREPAIKG----LLKG 501
NR+ + + CN +D E + K F + L + + I LLKG
Sbjct: 347 NRKELEVMAK---TCNRMDLTSDDEKTIIAKIFNNAIQCLNAEDRKLEQITELLPLLLKG 403
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
V HH+G LPI K +E LFQ GL+K +FATET A G+NMPART V +++ K
Sbjct: 404 VGMHHSGLLPIMKETVEILFQEGLIKCLFATETFAMGLNMPARTVVFTNVKKYDGKETRY 463
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
L E QM+GRAGRRG D++G V+L+ ++F +PL S F Y M+L
Sbjct: 464 LRPGEYIQMSGRAGRRGKDDQGTVILMVDQKIEPTVLKNMIFGKADPLTSSFYLGYNMLL 523
Query: 622 NLL 624
NL+
Sbjct: 524 NLM 526
>gi|225560526|gb|EEH08807.1| ATP-dependent RNA helicase DOB1 [Ajellomyces capsulatus G186AR]
Length = 1081
Score = 284 bits (726), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 190/558 (34%), Positives = 294/558 (52%), Gaps = 57/558 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F +D FQ+ SI + RG SV+VSA TS+GKT++AE A ++ N +R+ YT+P+K
Sbjct: 149 ARTWSFTLDPFQQVSIASIERGESVLVSAHTSAGKTVVAEYAIAQSLRNNQRVIYTSPIK 208
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 209 ALSNQKYREFAAEFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR------ 260
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
+V ++ DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI ++H +
Sbjct: 261 EVAWVIFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKMHNQPC 320
Query: 332 ELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL YF A + ++DEKG + R+ + + + +E
Sbjct: 321 HVVYTDFRPTPLQHYFFPAGADGIHLVVDEKG--VFREENFHKAMETIAE---------- 368
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ-VIDTLWHLRSRDMLPAIWFI 448
K D + N++ K + ++ P + + + ++ P I F
Sbjct: 369 -----KQGD-DPANVMAKRKGKGKDKKTNKGGESNKGPSDIYKIVKMIMLKNYNPVIVFS 422
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLLK----GVA 503
F++R C+A + DE E V + D +E P IK +L G+
Sbjct: 423 FSKRECEAFALQMSKMAFNDESEKEMVSKVFNSAIEMLSDEDKELPQIKHILPLLRLGIG 482
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K + +T
Sbjct: 483 VHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVSQRWIT 542
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
+E QM+GRAGRRG+D+RG V+++ +++ + L S F Y M+LNL
Sbjct: 543 PSEFVQMSGRAGRRGLDDRGIVIMMINEEMDPTVAKEIVRGEQDKLNSAFYLGYNMILNL 602
Query: 624 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 683
L +V +S E ++E+ F + + ++ + EL +++ E
Sbjct: 603 L---RVEGISPEF-----------------MLERCFYQFQNAASVVGLERELAELENEYA 642
Query: 684 VLTSEISDDAIDRKSRRL 701
V+T I D+ R+ L
Sbjct: 643 VMT--IPDEGTIREYYEL 658
>gi|346324289|gb|EGX93886.1| ATP-dependent RNA helicase DOB1 [Cordyceps militaris CM01]
Length = 1093
Score = 283 bits (725), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 180/482 (37%), Positives = 261/482 (54%), Gaps = 35/482 (7%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A Y F++D FQ S+ + R SV+VSA TS+GKT++AE A + +R+ YT+P
Sbjct: 151 EPARSYPFKLDPFQSLSVASIERDESVLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTSP 210
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+R+F FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 211 IKALSNQKYRDFEALFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR---- 264
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH +
Sbjct: 265 --EVAWVVFDEIHYMRDKTRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHHQ 322
Query: 331 T-ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL YF + + ++DEKG + + + EV+ K
Sbjct: 323 ACHVVYTDFRPTPLQNYFYPAGGSGARIVVDEKGN-----FNEDNFNIVMKEVEEKKGAD 377
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
N+++ N T G + IR + +R + P I F
Sbjct: 378 PNDINAKQTG--KGKNKKTHKGGSDDGSDMSKIIRMT-----------IR-KSFNPVIVF 423
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGV 502
F++R C+ + +L D+ E + V + R+ P IK LL +G+
Sbjct: 424 NFSKRECENMAISISKLSLNDDSEKAMVNKVFHSAIESLSEQDRDLPQIKNLLPLLVRGI 483
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH+G LPI K IE LFQ L+KV+FATET + G+NMPA+T V S ++K R L
Sbjct: 484 GVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFSQITKWDGVKRRPL 543
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
TS+E QMAGRAGRRG+D RG V+++ + +++ + L S F Y M+LN
Sbjct: 544 TSSEYVQMAGRAGRRGLDARGIVIMMIDDKLEPDTAKEIVTGQQDRLNSAFYLGYNMILN 603
Query: 623 LL 624
LL
Sbjct: 604 LL 605
>gi|296412548|ref|XP_002835986.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629783|emb|CAZ80143.1| unnamed protein product [Tuber melanosporum]
Length = 1195
Score = 283 bits (725), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 184/519 (35%), Positives = 266/519 (51%), Gaps = 87/519 (16%)
Query: 117 SSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSS 176
SS P +E W + + E+ F E+ V LA + F +D FQ+ ++ G S
Sbjct: 262 SSLRPKAKE---WAHMVDVNQEITNF-REL--VPNLAKEWPFELDTFQKEAVYHLENGDS 315
Query: 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236
V V+A TS+GKT++AE A + + YT+P+KALSNQKFR+FR F D VG+LTG
Sbjct: 316 VFVAAHTSAGKTVVAEYAIALATKHMTKAIYTSPIKALSNQKFRDFRHVFED--VGILTG 373
Query: 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEE 296
D IN EA LIMTTEILR+MLY+ ++ DV+ ++ DEVHY+++ RG VWEE
Sbjct: 374 DVQINPEASCLIMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNNQERGVVWEE 427
Query: 297 IIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLP 355
+II P+ V +I LSATV N E A W+G+ K +I++ +RPVPL + A+
Sbjct: 428 VIIMLPEHVNLILLSATVPNPYEFASWVGRTKKKDIYVISTPKRPVPLEHFIWANKAMYK 487
Query: 356 LLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSK 415
+++ + K+GG + NI H L K
Sbjct: 488 IVNSEK----------------------KEGGHK-------------NIWVHL-VHHLKK 511
Query: 416 NSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV 475
++ LPA+ F+F+++ C+ V L + ++ E S +
Sbjct: 512 ETL-----------------------LPAVIFVFSKKRCEENVDALSAVDFSNQTEKSAI 548
Query: 476 ELALKR--FRI-----LYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKV 528
+ +++ R+ L P +R + G +G+A HH G LPI K +E LF + LVKV
Sbjct: 549 HMIIEKSVARLKPEDRLLPQILRMRELLG--RGLAVHHGGLLPIVKEIVEILFAKTLVKV 606
Query: 529 VFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
+FATET A G+N+P RT V S K L +E QMAGRAGRRG+D RG +V++
Sbjct: 607 LFATETFAMGLNLPTRTVVFSGYRKHDGKSFRDLHPDEYIQMAGRAGRRGLDERG-IVII 665
Query: 589 QTPYEGAEECCKL---LFAGVEPLVSQFTASYGMVLNLL 624
+P + A L L L SQF +Y M+LNL
Sbjct: 666 ISPMDEAPPAATLKHMLLGQPTRLQSQFRLTYNMILNLF 704
>gi|303316466|ref|XP_003068235.1| RNA helicase, putative [Coccidioides posadasii C735 delta SOWgp]
gi|240107916|gb|EER26090.1| RNA helicase, putative [Coccidioides posadasii C735 delta SOWgp]
Length = 1074
Score = 283 bits (725), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 196/573 (34%), Positives = 306/573 (53%), Gaps = 72/573 (12%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F++D FQ+ SI + RG SV+VSA TS+GKT++AE A + N +R+ YT+P+K
Sbjct: 146 ARTWPFKLDPFQQVSIASIERGESVLVSAHTSAGKTVVAEYAIAHCLKNNQRVIYTSPIK 205
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 206 ALSNQKYREFASEFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR------ 257
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI + H +
Sbjct: 258 EVAWVVFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKTHNQPC 317
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL Y + + +++EKG K N + ++ G
Sbjct: 318 HVVYTDFRPTPLQHYLFPAGGEGIFLVVNEKGNFKEENFQKAM---------------GA 362
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+ AD N+ + S V +++ + ++S + P I F
Sbjct: 363 IADKKGDDPADANARGKGKGKNKKTNKGGEKGP---SDVFKIVRMIM-MKSYN--PVIVF 416
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF----RILYPDAVREPAIKGLL---- 499
F++R C+A L++ + D+ SE E+ K F +L + + P I+ +L
Sbjct: 417 SFSKRECEAHALTLKNLSFNDD---SEKEMVTKVFNSAIEMLSDEDKKLPQIENILPLLR 473
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+G+ HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +++ K + +
Sbjct: 474 RGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTNVRKFDGTSQ 533
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
LT +E QM+GRAGRRG+D+RG V+++ +++ + L S F Y M
Sbjct: 534 RWLTPSEFVQMSGRAGRRGLDDRGIVIMMVNEEMDPTVVKEIVRGEQDKLNSAFYLGYNM 593
Query: 620 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 679
+LNLL +V +S E ++E+ F + ++ + + EL ++
Sbjct: 594 ILNLL---RVEGISPEF-----------------MLERCFAQFQSASSVGTLEKELEDLE 633
Query: 680 KETDVLTSEISDDAIDRK---SRRLLSEAAYKE 709
+ + +T ISD+ R+ SR+LL A Y E
Sbjct: 634 NQRENMT--ISDEGTIREYYDSRQLL--ATYNE 662
>gi|350297103|gb|EGZ78080.1| antiviral helicase [Neurospora tetrasperma FGSC 2509]
Length = 1294
Score = 283 bits (725), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 200/601 (33%), Positives = 295/601 (49%), Gaps = 68/601 (11%)
Query: 79 DDIDDDDDEEAAD---EYDDVSGEVSDEIQQSDDEFE----VSSDSSPAPSWREEF---- 127
+D+ + E+A D E D+V+G +E + + D+ E + PA R
Sbjct: 230 EDVLGQEPEDAPDGEGERDEVNGVKREESEDNQDDLEDIDAILPVEFPALEPRGTLAASN 289
Query: 128 ------KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSA 181
+W + + E+ F E+ V ++A + F +D FQ+ ++ G SV V+A
Sbjct: 290 ARKAGREWAHMVDIRREIPNF-REL--VPDMAREWPFELDTFQKEAVYHLENGDSVFVAA 346
Query: 182 PTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAIN 241
TS+GKT++AE A + + YT+P+KALSNQKFR+FR+TF + VG+LTGD IN
Sbjct: 347 HTSAGKTVVAEYAIALAAKHMTKAIYTSPIKALSNQKFRDFRQTF--DEVGILTGDVQIN 404
Query: 242 REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC 301
EA LIMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II
Sbjct: 405 PEASCLIMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDYERGVVWEEVIIML 458
Query: 302 PKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEK 360
P+ V +I LSATV N E A W+G+ K +I++ +RPVPL Y + ++D +
Sbjct: 459 PEHVSLILLSATVPNTYEFASWVGRTKQKDIYVISTPKRPVPLEHYLWAGKKIHKIVDSE 518
Query: 361 GKHMNRKLSLNYLQLSTSEVKPYKDGGS-------RRRNSRKHADMNSNNIVTSFGQHQL 413
K + L + + P S + R A +N
Sbjct: 519 KKFIETGWKEANLAIQGKDKPPKAIEASTGPARGGGNQRGRGGAQRGANQPRGGARGGGQ 578
Query: 414 SKNSINAIRRSQVPQVI---------------DTLW-----HLRSRDMLPAIWFIFNRRG 453
+ R S P + LW L+ ++LPA F+F+++
Sbjct: 579 QRGRGGPPRASHTPGHMGRTGRPGGFTSAAQDKNLWVHLVQFLKKDNLLPACIFVFSKKR 638
Query: 454 CDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAI----KGLLKGVAAHHAG 508
C+ L + + E S + + ++R L P+ P I + L +G+A HH G
Sbjct: 639 CEENADALSNQDFCTAQEKSHIHMIIERSIARLKPEDRVLPQIIRLRELLSRGIAVHHGG 698
Query: 509 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 568
LPI K +E LF LVKV+FATET A G+N+P RT V S K L E
Sbjct: 699 LLPIVKEMVEILFAETLVKVLFATETFAMGLNLPTRTVVFSGYRKHDGHQFRNLLPGEYT 758
Query: 569 QMAGRAGRRGIDNRGHVVLVQTPYEGAE-----ECCKLLFAGVEPLVSQFTASYGMVLNL 623
QMAGRAGRRG+D G V++V P G E + +++ L SQF +Y M+LNL
Sbjct: 759 QMAGRAGRRGLDTVGSVIIV--PPGGDEAPPVTDLRQMILGEPSKLRSQFRLTYNMILNL 816
Query: 624 L 624
L
Sbjct: 817 L 817
>gi|66359948|ref|XP_627152.1| Mtr4p like SKI family SFII helicase [Cryptosporidium parvum Iowa
II]
gi|46228571|gb|EAK89441.1| Mtr4p like SKI family SFII helicase [Cryptosporidium parvum Iowa
II]
Length = 1280
Score = 283 bits (725), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 179/496 (36%), Positives = 268/496 (54%), Gaps = 48/496 (9%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F++D FQ SI G SV++SA TS+GKT +AE A + + +R+ YT+P+K
Sbjct: 93 AKEYSFKLDTFQAVSIGCLEIGESVLISAHTSAGKTCVAEYAIAMALKSNQRVVYTSPIK 152
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+R+ R TFGDNNVGLLTGD +N I++MTTEILR+MLY+ +V
Sbjct: 153 ALSNQKYRDLRTTFGDNNVGLLTGDVTVNPLGSIMVMTTEILRSMLYRGSELVR------ 206
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKT 331
++ ++ DE+HY+ D RG VWEE II P V+++ LSAT+ N E A WI + H
Sbjct: 207 EIAWVIFDEIHYMRDKERGVVWEESIILLPDTVRLVFLSATIPNHLEFAEWICRTKHQPC 266
Query: 332 ELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
++ + RPVPL + F + L+ ++ K + NY++ + S +K + S +
Sbjct: 267 HVVYTDYRPVPLQHFIFPAGGNGVYLVMDENKVFKQD---NYMK-ALSALKIAAESNSSQ 322
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
+ +KHA G+ QL R + +++ + R LP I F F+
Sbjct: 323 KEQKKHA-----------GKAQL---------RVDLESIVNM---CQERSYLPIIVFSFS 359
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAH 505
++ C+ L++ +L E E ++ + R P + G+L +G+ H
Sbjct: 360 KKDCELNALSLKNIDLSTEEEKESIDFIFNSALATLAEEDRNIPQVVGMLPLLRRGIGIH 419
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
H G LP+ K +E LF +KV+F+TET + GINMPA+T + +SL K + S
Sbjct: 420 HGGLLPVVKEIVELLFGESFIKVLFSTETFSMGINMPAKTVIFTSLRKFDGKEYRIVNSG 479
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEE-CCKLLFAGVEPLV--SQFTASYGMVLN 622
E QM+GRAGRRG+D+RG + + E A+ K + G +PL SQF Y M+LN
Sbjct: 480 EFIQMSGRAGRRGLDDRG--ITITMIDELADPWAIKSMLTG-QPLRIDSQFYIGYNMLLN 536
Query: 623 L--LAGAKVMHLSNES 636
L L GA ++ N S
Sbjct: 537 LLRLEGADPEYMINRS 552
>gi|154278623|ref|XP_001540125.1| ATP-dependent RNA helicase DOB1 [Ajellomyces capsulatus NAm1]
gi|150413710|gb|EDN09093.1| ATP-dependent RNA helicase DOB1 [Ajellomyces capsulatus NAm1]
Length = 1081
Score = 283 bits (725), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 191/558 (34%), Positives = 293/558 (52%), Gaps = 57/558 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F +D FQ+ SI + RG SV+VSA TS+GKT++AE A ++ N +R+ YT+P+K
Sbjct: 149 ARTWSFTLDPFQQVSIASIERGESVLVSAHTSAGKTVVAEYAIAQSLRNNQRVIYTSPIK 208
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 209 ALSNQKYREFAAEFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR------ 260
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI ++H +
Sbjct: 261 EVAWVVFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKMHNQPC 320
Query: 332 ELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL YF A + ++DEKG + R+ + + + +E
Sbjct: 321 HVVYTDFRPTPLQHYFFPAGADGIHLVVDEKG--VFREENFHKAMETIAE---------- 368
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ-VIDTLWHLRSRDMLPAIWFI 448
K D + N++ K + ++ P + + + ++ P I F
Sbjct: 369 -----KQGD-DPANVMAKRKGKGKDKKTNKGGESNKGPSDIYKIVKMIMLKNYNPVIVFS 422
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLLK----GVA 503
F++R C+A + DE E V + D +E P IK +L G+
Sbjct: 423 FSKRECEAFALQMSKMAFNDESEKEMVSKVFNSAIEMLSDEDKELPQIKHILPLLRLGIG 482
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K + +T
Sbjct: 483 VHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVSQRWIT 542
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
+E QM+GRAGRRG+D+RG V+++ +++ + L S F Y M+LNL
Sbjct: 543 PSEFVQMSGRAGRRGLDDRGIVIMMINEEMDPTVAKEIVRGEQDKLNSAFYLGYNMILNL 602
Query: 624 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 683
L +V +S E ++E+ F + + + + EL +++ E
Sbjct: 603 L---RVEGISPEF-----------------MLERCFYQFQNAASVAGLERELAELENEYA 642
Query: 684 VLTSEISDDAIDRKSRRL 701
V+T I D+ R+ L
Sbjct: 643 VMT--IPDEGTIREYYEL 658
>gi|449445443|ref|XP_004140482.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Cucumis
sativus]
Length = 994
Score = 283 bits (725), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 172/480 (35%), Positives = 253/480 (52%), Gaps = 39/480 (8%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A ++ F +D FQ +I+ G SV+VSA TS+GKT++A A ++ N++R+ YT+P
Sbjct: 63 EPAKVFPFSLDPFQSEAIKCLETGESVMVSAHTSAGKTVVALYAIAMSLRNKQRVIYTSP 122
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+REF+E F D VGL+TGD I+ A L+MTTEI R+M Y+ +
Sbjct: 123 IKALSNQKYREFKEEFSD--VGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTR---- 176
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V I+ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H +
Sbjct: 177 --EVAWIIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWVAKVHHQ 234
Query: 331 -TELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL Y S L ++DEKG H + Q + + + P DG
Sbjct: 235 PCHIVYTDYRPTPLQHYIFPSGSEGLYLVVDEKG-HFRE----DSFQKALNALVPVSDGD 289
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
++ N+ K + S+ + + + + + R P I F
Sbjct: 290 KKKENNGKW------------------QKSLTLGKTGEDSDIFKMVKMIIQRQYDPVILF 331
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL----KGV 502
F++R C+ + +L + E +E +L D + P + +L +G+
Sbjct: 332 SFSKRECEFLAMQMAKLDLNGDDEKVNIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGI 391
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH+G LPI K IE LFQ GL+K +FATET + G+NMPA+T V S++ K L
Sbjct: 392 GVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFSNVRKFDGDKFRWL 451
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
+S E QM+GRAGRRGID RG +L+ +L + L S F SY M+LN
Sbjct: 452 SSGEYIQMSGRAGRRGIDKRGICILMVDEKLEPSTAKMMLKGNADCLNSAFHLSYNMLLN 511
>gi|67623323|ref|XP_667944.1| ATP-dependent RNA helicase; ATP-dependent RNA helicase
[Cryptosporidium hominis TU502]
gi|54659130|gb|EAL37723.1| ATP-dependent RNA helicase; ATP-dependent RNA helicase
[Cryptosporidium hominis]
Length = 1280
Score = 283 bits (725), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 179/496 (36%), Positives = 268/496 (54%), Gaps = 48/496 (9%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F++D FQ SI G SV++SA TS+GKT +AE A + + +R+ YT+P+K
Sbjct: 93 AKEYSFKLDTFQAVSIGCLEIGESVLISAHTSAGKTCVAEYAIAMALKSNQRVVYTSPIK 152
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+R+ R TFGDNNVGLLTGD +N I++MTTEILR+MLY+ +V
Sbjct: 153 ALSNQKYRDLRTTFGDNNVGLLTGDVTVNPLGSIMVMTTEILRSMLYRGSELVR------ 206
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKT 331
++ ++ DE+HY+ D RG VWEE II P V+++ LSAT+ N E A WI + H
Sbjct: 207 EIAWVIFDEIHYMRDKERGVVWEESIILLPDTVRLVFLSATIPNHLEFAEWICRTKHQPC 266
Query: 332 ELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
++ + RPVPL + F + L+ ++ K + NY++ + S +K + S +
Sbjct: 267 HVVYTDYRPVPLQHFIFPAGGNGVYLVMDENKVFKQD---NYMK-ALSALKIAAESNSSQ 322
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
+ +KHA G+ QL R + +++ + R LP I F F+
Sbjct: 323 KEQKKHA-----------GKAQL---------RVDLESIVNM---CQERSYLPIIVFSFS 359
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAH 505
++ C+ L++ +L E E ++ + R P + G+L +G+ H
Sbjct: 360 KKDCELNALSLKNIDLSTEEEKESIDFIFNSALATLAEEDRNIPQVVGMLPLLRRGIGIH 419
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
H G LP+ K +E LF +KV+F+TET + GINMPA+T + +SL K + S
Sbjct: 420 HGGLLPVVKEIVELLFGESFIKVLFSTETFSMGINMPAKTVIFTSLRKFDGKEYRIVNSG 479
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEE-CCKLLFAGVEPLV--SQFTASYGMVLN 622
E QM+GRAGRRG+D+RG + + E A+ K + G +PL SQF Y M+LN
Sbjct: 480 EFIQMSGRAGRRGLDDRG--ITITMIDELADPWAIKSMLTG-QPLRIDSQFYIGYNMLLN 536
Query: 623 L--LAGAKVMHLSNES 636
L L GA ++ N S
Sbjct: 537 LLRLEGADPEYMINRS 552
>gi|239610801|gb|EEQ87788.1| ATP-dependent RNA helicase DOB1 [Ajellomyces dermatitidis ER-3]
Length = 1081
Score = 283 bits (724), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 177/480 (36%), Positives = 263/480 (54%), Gaps = 33/480 (6%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F +D FQ+ SI + RG SV+VSA TS+GKT++AE A ++ N +R+ YT+P+K
Sbjct: 149 ARTWSFTLDPFQQVSIASIERGESVLVSAHTSAGKTVVAEYAIAQSLKNNQRVIYTSPIK 208
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 209 ALSNQKYREFAAEFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR------ 260
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
+V ++ DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI ++H +
Sbjct: 261 EVAWVIFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKMHNQPC 320
Query: 332 ELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL YF A + ++DEKG + R+ + + + +E
Sbjct: 321 HVVYTDFRPTPLQHYFFPAGADGIHLVVDEKG--VFREENFHKAMETIAE---------- 368
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
K D +N + G+ + K + + + + ++ P I F F
Sbjct: 369 -----KQGDDPANAMAKRKGKGKDKKTNKGGDGNKGPSDIYKIVKMIMLKNYNPVIVFSF 423
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLLK----GVAA 504
++R C+A + DE E V + D +E P IK +L G+
Sbjct: 424 SKRECEAFALQMSKMAFNDESEKEMVSKVFNSAIEMLSDEDKELPQIKHILPLLRLGIGV 483
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K + +T
Sbjct: 484 HHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVSQRWITP 543
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+E QM+GRAGRRG+D+RG V+++ +++ + L S F Y MVLNLL
Sbjct: 544 SEFVQMSGRAGRRGLDDRGIVIMMINEEMDPTVAKEIVRGEQDKLNSAFYLGYNMVLNLL 603
>gi|240280087|gb|EER43591.1| ATP-dependent RNA helicase DOB1 [Ajellomyces capsulatus H143]
gi|325088808|gb|EGC42118.1| ATP-dependent RNA helicase DOB1 [Ajellomyces capsulatus H88]
Length = 1081
Score = 283 bits (724), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 191/558 (34%), Positives = 294/558 (52%), Gaps = 57/558 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F +D FQ+ SI + RG SV+VSA TS+GKT++AE A ++ N +R+ YT+P+K
Sbjct: 149 ARTWSFTLDPFQQVSIASIERGESVLVSAHTSAGKTVVAEYAIAQSLRNNQRVIYTSPIK 208
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 209 ALSNQKYREFAAEFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR------ 260
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI ++H +
Sbjct: 261 EVAWVVFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKMHNQPC 320
Query: 332 ELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL YF A + ++DEKG + R+ + + + +E
Sbjct: 321 HVVYTDFRPTPLQHYFFPAGADGIHLVVDEKG--VFREENFHKAMETIAE---------- 368
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ-VIDTLWHLRSRDMLPAIWFI 448
K D + N++ K + ++ P + + + ++ P I F
Sbjct: 369 -----KQGD-DPANVMAKRKGKGKDKKTNKGGESNKGPSDIYKIVKMIILKNYNPVIVFS 422
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLLK----GVA 503
F++R C+A + DE E V + D +E P IK +L G+
Sbjct: 423 FSKRECEAFALQMSKMAFNDESEKEMVSKVFNSAIEMLSDEDKELPQIKHILPLLRLGIG 482
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K + +T
Sbjct: 483 VHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVSQRWIT 542
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
+E QM+GRAGRRG+D+RG V+++ +++ + L S F Y M+LNL
Sbjct: 543 PSEFVQMSGRAGRRGLDDRGIVIMMINEEMDPTVAKEIVRGEQDKLNSAFYLGYNMILNL 602
Query: 624 LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETD 683
L +V +S E ++E+ F + + ++ + EL +++ E
Sbjct: 603 L---RVEGISPEF-----------------MLERCFYQFQNAASVVGLERELAELENEYA 642
Query: 684 VLTSEISDDAIDRKSRRL 701
V+T I D+ R+ L
Sbjct: 643 VMT--IPDEGTIREYYEL 658
>gi|261206458|ref|XP_002627966.1| ATP-dependent RNA helicase DOB1 [Ajellomyces dermatitidis SLH14081]
gi|239593025|gb|EEQ75606.1| ATP-dependent RNA helicase DOB1 [Ajellomyces dermatitidis SLH14081]
gi|327350333|gb|EGE79190.1| ATP-dependent RNA helicase DOB1 [Ajellomyces dermatitidis ATCC
18188]
Length = 1081
Score = 283 bits (724), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 177/480 (36%), Positives = 263/480 (54%), Gaps = 33/480 (6%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F +D FQ+ SI + RG SV+VSA TS+GKT++AE A ++ N +R+ YT+P+K
Sbjct: 149 ARTWSFTLDPFQQVSIASIERGESVLVSAHTSAGKTVVAEYAIAQSLKNNQRVIYTSPIK 208
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 209 ALSNQKYREFAAEFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR------ 260
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
+V ++ DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI ++H +
Sbjct: 261 EVAWVIFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKMHNQPC 320
Query: 332 ELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL YF A + ++DEKG + R+ + + + +E
Sbjct: 321 HVVYTDFRPTPLQHYFFPAGADGIHLVVDEKG--VFREENFHKAMETIAE---------- 368
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
K D +N + G+ + K + + + + ++ P I F F
Sbjct: 369 -----KQGDDPANAMAKRKGKGKDKKTNKGGDGNKGPSDIYKIVKMIMLKNYNPVIVFSF 423
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLLK----GVAA 504
++R C+A + DE E V + D +E P IK +L G+
Sbjct: 424 SKRECEAFALQMSKMAFNDESEKEMVSKVFNSAIEMLSDEDKELPQIKHILPLLRLGIGV 483
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K + +T
Sbjct: 484 HHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVSQRWITP 543
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+E QM+GRAGRRG+D+RG V+++ +++ + L S F Y MVLNLL
Sbjct: 544 SEFVQMSGRAGRRGLDDRGIVIMMINEEMDPTVAKEIVRGEQDKLNSAFYLGYNMVLNLL 603
>gi|256371712|ref|YP_003109536.1| DEAD/DEAH box helicase domain-containing protein [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008296|gb|ACU53863.1| DEAD/DEAH box helicase domain protein [Acidimicrobium ferrooxidans
DSM 10331]
Length = 815
Score = 283 bits (724), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 182/483 (37%), Positives = 259/483 (53%), Gaps = 68/483 (14%)
Query: 160 IDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKF 219
+D+FQ ++EA GSSV+VSAPT SGKT++A + RR FYT+PLKALSNQK+
Sbjct: 1 MDRFQDEALEALDEGSSVLVSAPTGSGKTIVALYGMAQALRQGRRAFYTSPLKALSNQKY 60
Query: 220 REFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVL 279
E FG +VGLLTGD+ +N +A ++MTTE+LRNM+Y +S + + DVDV+VL
Sbjct: 61 HELARFFGPQHVGLLTGDTTLNPDAPAVVMTTEVLRNMIY------ASPAAIDDVDVVVL 114
Query: 280 DEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRR 339
DEVHYL + RG+VWEE+II+ P+ V+++ LSATV+N E AGW+ + G T ++ ++ R
Sbjct: 115 DEVHYLQNPYRGSVWEEVIIHLPRRVRLVSLSATVSNVAEFAGWLAAVRGTTRVVEATHR 174
Query: 340 PVPL--TWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
PVPL + ++ + + P+ P GG R + + A
Sbjct: 175 PVPLEHRYLYTPRRSETPV-----------------------AIPVLVGG---RENPQGA 208
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAA 457
++ + S + L +++ I ++++ L H LPAI FIF+R GC+ A
Sbjct: 209 QLDPPWLARSRYRDGLRARTVHRI------ELVEFLAH---EGDLPAIVFIFSRAGCERA 259
Query: 458 VQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE----------------PAIKGLLKG 501
DE S + L R+ V E P + GL G
Sbjct: 260 ---------RDEVVASGIRLTTAAERVAIRRIVDERLDGLAERDLAAVGFAPFLAGLEAG 310
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+A HHAG +P ++ +E F+R LVKVVFATETL+ GINMPAR+ V+ L K
Sbjct: 311 IAPHHAGMIPPFREVVEACFERALVKVVFATETLSLGINMPARSVVIERLVKFDGESHQL 370
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
L E Q AGRAGRRGID RG +V P + ++ A P+ S F +Y M
Sbjct: 371 LKPGEYTQFAGRAGRRGIDERGTSYVVWGPQVAFSDVAHVVRADFYPITSSFRPTYNMAA 430
Query: 622 NLL 624
NL+
Sbjct: 431 NLV 433
>gi|50419435|ref|XP_458244.1| DEHA2C13068p [Debaryomyces hansenii CBS767]
gi|49653910|emb|CAG86320.1| DEHA2C13068p [Debaryomyces hansenii CBS767]
Length = 1062
Score = 283 bits (724), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 187/541 (34%), Positives = 279/541 (51%), Gaps = 40/541 (7%)
Query: 93 YDDVSGEVSDEIQQSDDEFEVSSDSSPAP-SWREEFKWQRVEKLCNEVKEFGNEMIDVDE 151
+D V E S E+ SD +SD+ P R + + Q G +
Sbjct: 75 FDAVEIEASREVAVSDGLMGKTSDAKPGQLQLRHQVRHQVAIPPEYPYVPIGEHKRQNE- 133
Query: 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211
A Y F +D FQ ++I R SV+VSA TS+GKT++AE A ++ ++R+ YT+P+
Sbjct: 134 -ARTYPFVLDPFQDTAISCIDRSESVLVSAHTSAGKTVVAEYAIAQSLREKQRVIYTSPI 192
Query: 212 KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGL 271
KALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 193 KALSNQKYRELLAEFGD--VGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEVMR----- 245
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK- 330
+V ++ DEVHY+ D +RG VWEE II P +V + LSAT+ NA E A WI +IH +
Sbjct: 246 -EVAWVIFDEVHYMRDKARGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKIHAQP 304
Query: 331 TELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ + RP PL Y + + ++DEKG N+ + S D S
Sbjct: 305 CHVVYTDFRPTPLQHYLFPAAGDGIHLVVDEKGTFREE----NFQKAMASISDNVGDDPS 360
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
S+ G+ + N +S + +++ ++ R P I F
Sbjct: 361 SADKSK--------------GKKGQTYKGGNKDGKSDIYKIVKMIYMKRYN---PVIVFS 403
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVA 503
F++R C++ + + + E + L PDA +E P IK +L +G+
Sbjct: 404 FSKRDCESLALKMSKLDFNTDDEREALTKIFNNAIELLPDADKELPQIKNILPLLRRGIG 463
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K G ++
Sbjct: 464 IHHSGLLPILKEIIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKGFRWVS 523
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL
Sbjct: 524 GGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNL 583
Query: 624 L 624
+
Sbjct: 584 M 584
>gi|452984270|gb|EME84027.1| hypothetical protein MYCFIDRAFT_202861 [Pseudocercospora fijiensis
CIRAD86]
Length = 1085
Score = 283 bits (724), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 180/483 (37%), Positives = 263/483 (54%), Gaps = 34/483 (7%)
Query: 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209
+E A ++ F++D FQ SI + R SV+VSA TS+GKT++AE A + N +RI YT+
Sbjct: 151 EEPARVWPFQLDPFQEVSIASIERNESVLVSAHTSAGKTVVAEYAIAQCLKNNQRIIYTS 210
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSES 269
P+KALSNQK+REF+ FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 211 PIKALSNQKYREFQAEFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR--- 265
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
+V +V DEVHY+ D SRG VWEE II P +V+ + LSAT+ NA + A WI + H
Sbjct: 266 ---EVAWVVFDEVHYMRDKSRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKTHN 322
Query: 330 K-TELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
+ ++ + RP PL YF A + ++DEKG + R+ + N + +E K DG
Sbjct: 323 QPCHVVYTDFRPTPLQHYFFPAGAEGIHLVVDEKG--VFREENFNKAMAAIAE-KAGDDG 379
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
+ + T+ G + I I + + ++ P I
Sbjct: 380 S----DPMAKRKGRGKDKKTNKGGKKEGPTDIYKIVKM-----------IMMKNYNPVIV 424
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KG 501
F F++R C+ + D+ E V+ +L + + P I LL +G
Sbjct: 425 FSFSKRECETYALQMSQLAFNDDSEKQMVQKVFDSAIEMLSEEDKQLPQILHLLPLLRRG 484
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+ HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K +
Sbjct: 485 IGIHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVTQRW 544
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
+T +E QM+GRAGRRG+D RG V+++ +++ + L S F Y MVL
Sbjct: 545 VTPSEFIQMSGRAGRRGLDERGIVIMMIDEKMDPTVAKEIVRGEQDKLNSAFHLGYNMVL 604
Query: 622 NLL 624
NL+
Sbjct: 605 NLI 607
>gi|89894658|ref|YP_518145.1| hypothetical protein DSY1912 [Desulfitobacterium hafniense Y51]
gi|89334106|dbj|BAE83701.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 750
Score = 283 bits (724), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 177/475 (37%), Positives = 257/475 (54%), Gaps = 65/475 (13%)
Query: 160 IDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKF 219
+D+FQ +++A G SV+V+APT +GKTL+A+ +A RRI YT P+KALSNQKF
Sbjct: 11 LDRFQEEALDAIDEGQSVIVAAPTGTGKTLVADYLVEKVMAEGRRIIYTAPIKALSNQKF 70
Query: 220 REFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVL 279
+++++ FG + VG+LTGD +N EA +LIMTTEI RN +++++ L V I+
Sbjct: 71 KDYKQLFGVDQVGILTGDVVLNSEAPLLIMTTEIFRNQ------VITNDPSLESVSYIIF 124
Query: 280 DEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSR 338
DE+H+L+D RGTVWEE II P ++++ LSAT+ANA +L WIG I + LI +R
Sbjct: 125 DEIHWLNDEERGTVWEESIILAPPHMKLLGLSATIANAQQLVDWIGTIRQEDVALIQENR 184
Query: 339 RPVPLT-WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397
R VPL +YFS T L +NY +L K+
Sbjct: 185 RIVPLEYYYFSRDTGL----------------VNYEKLW------------------KYY 210
Query: 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC-DA 456
+ + G N ++ I+ Q + LPA++F+F+R+ C D
Sbjct: 211 RQQIQSAPPTEGSLFAPTNHLDLIKVIQ-------------KQYLPALYFVFSRKQCADK 257
Query: 457 AVQYLEDCNLLDECEMSEVELA-LKRFRILYPDAVREPAIKGL----LKGVAAHHAGCLP 511
A + N L+ E +VE A L+ F P++ P+ + L +KG+A HHAG +P
Sbjct: 258 ASELAYLTNYLNPQEKRQVEDAFLEHFG---PESDWYPSTRLLRRLAVKGIAFHHAGLMP 314
Query: 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMA 571
K +EELF + L+ V++ TET + GIN P R+ +L+K L ++E FQM+
Sbjct: 315 SQKVLVEELFLKRLIHVLYCTETFSVGINYPVRSVCFDTLNKFDGRNFRPLANHEFFQMS 374
Query: 572 GRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
GRAGRRG+D RG+ LV Y + +EPL SQF SY VLNL A
Sbjct: 375 GRAGRRGLDERGYSFALVDLNYMEKSPPPRFNINRLEPLTSQFKLSYNTVLNLQA 429
Score = 41.6 bits (96), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 1099 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI---PKLPDVDQRLQ 1154
D + + +V +W+ G+++ E+ LD+GD+ ++RRTIDLL Q+ K P + QRL+
Sbjct: 676 DPRVAVIVYSWSQGVSFAEVQRLSNLDEGDIISVIRRTIDLLRQMRDAVKEPALLQRLK 734
>gi|255088573|ref|XP_002506209.1| predicted protein [Micromonas sp. RCC299]
gi|226521480|gb|ACO67467.1| predicted protein [Micromonas sp. RCC299]
Length = 1047
Score = 283 bits (724), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 198/567 (34%), Positives = 280/567 (49%), Gaps = 63/567 (11%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A Y F +D FQ +S+ R SV+V+A TS+GKT++AE A + +R+ YT+P
Sbjct: 74 ERAKTYPFVLDAFQETSVSVLERNESVLVAAHTSAGKTVVAEYAIAMAFRDNQRVVYTSP 133
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
LKALSNQKFRE E FGD VGL+TGD IN A ++MTTE+LR MLY+ +V
Sbjct: 134 LKALSNQKFRELTEEFGD--VGLMTGDVCINPNASCIVMTTEVLRGMLYRGSDVVR---- 187
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V I+ DEVHY+ D RG VWEE II+ P + + LSAT+ NA E A WI +H
Sbjct: 188 --EVKWIIFDEVHYMRDRERGVVWEESIIFAPAGCKFVFLSATLPNAHEFAEWITHLHNH 245
Query: 331 -TELITSSRRPVPLTWYFSTK--TALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL Y K ++ +++E+ + L NY +L +
Sbjct: 246 PCHVVYTDYRPTPLQHYGFPKGGNGMVMIVNERKEF----LEANYAELEAKIDALTQSAK 301
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSK----------NSINAIRRSQVPQVIDTLWHLR 437
R+R+ R AD G +S + +++ T+ R
Sbjct: 302 KRKRDERVKADGGRGRGGGGRGGGGRGGRWGRGGGRGGDSGEDASEVDIKKIMKTI---R 358
Query: 438 SRDMLPAIWFIFNRRGCDA-AVQYLEDCNLLDECEMSEVELALKRFRILYPDAV------ 490
+RD+ P I F F+RR C+ A + LD + EL R +Y +A+
Sbjct: 359 ARDLYPVIVFSFSRRACETHANDLMTGKTQLDFTTQEQKEL----IRQIYDNALLCMAEE 414
Query: 491 -REPA-----IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 544
RE A L +G+ HH G LPI K +E LF LVK +FATET A G+NMPAR
Sbjct: 415 DRELACVQKIFPMLERGIGIHHGGLLPIIKELVEILFGESLVKCLFATETFAMGLNMPAR 474
Query: 545 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 604
T V + + K L E QMAGRAGRRG D+RG +L+ EE +
Sbjct: 475 TCVFTEVEKFDGKEMRVLQPGEYTQMAGRAGRRGKDDRGTCILMLDKKLDKEELVHMTCG 534
Query: 605 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 664
L+S+F +Y +LNLL A S E E+A ++++SF +
Sbjct: 535 TGSALMSEFKLTYYSILNLLRRA-----SGE-------------EDAEYVIQRSFHQFQH 576
Query: 665 SNVMLAAKDELCKIQKETDVLTSEISD 691
+ + K EL +I E D + ++SD
Sbjct: 577 TREVPRKKLELQEITAEADGIQLDMSD 603
>gi|145347614|ref|XP_001418258.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578487|gb|ABO96551.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 933
Score = 283 bits (724), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 194/560 (34%), Positives = 282/560 (50%), Gaps = 67/560 (11%)
Query: 147 IDVDEL-ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205
I+V E+ A Y F +D FQ+ ++E RG SV+VSA TS+GKT++AE A + + +R+
Sbjct: 8 IEVPEVPAKSYAFELDTFQQKAVECLERGESVLVSAHTSAGKTVVAEYAIAMAIRDGQRV 67
Query: 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMV 265
YT+PLKALSNQK+RE +E F D VGL+TGD IN A L+MTTE+LR+MLY+ G V
Sbjct: 68 VYTSPLKALSNQKYRELKEEFED--VGLMTGDVVINPSASCLVMTTEVLRSMLYRG-GEV 124
Query: 266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325
E G ++ DE+HY+ D RG VWEE I+ P V+ + LSAT+ NA E A W+
Sbjct: 125 MREVGW-----VIYDEIHYMRDSERGVVWEESIVLLPDMVKYVFLSATIPNAREFAEWVC 179
Query: 326 QIHGK-TELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 382
+ H + ++ + RP PL Y + + ++D + K + N+ Q T
Sbjct: 180 KTHNQPCHIVYTDFRPTPLEHYVFPANGEGIFLVMDRQSKFRDS----NFEQAVTVIADG 235
Query: 383 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
+R N + D G+ + I I R V R+
Sbjct: 236 GGAAAARVANRARGDD----------GKKEAVNQDIFKIIRMVV-----------ERNYD 274
Query: 443 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAIKG---- 497
P I F FN+ C+ L +L DE E ++ + L + R P +
Sbjct: 275 PVIVFAFNKHECEKMANSLHKVDLCDEDEKKLIDTIYWNAMDSLSDEDKRLPQVANLPNL 334
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
L +G+ HH+G LPI K IE LFQ GL+KV+FATET++ G+NMPART V S K +
Sbjct: 335 LRRGLGVHHSGLLPILKEVIEILFQEGLIKVLFATETMSVGLNMPARTVVFCSPRKFDGA 394
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
G +TS E QM+GRAGRRG D+RG V+L+ +L + L S F +Y
Sbjct: 395 GFRWITSGEYIQMSGRAGRRGKDDRGLVILMMDERMDPPVAKNMLHGQSDTLDSAFHLNY 454
Query: 618 GMVLNLL--AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDEL 675
M+LNL+ GA E L++ SF + + + ++
Sbjct: 455 AMILNLMRVEGA----------------------EPESLIQSSFAQFQNDRALPGLEAKI 492
Query: 676 CKIQKETDVLTSEISDDAID 695
+IQK+ D + +D++D
Sbjct: 493 VEIQKDRDAVKIH-DEDSVD 511
>gi|119188221|ref|XP_001244717.1| hypothetical protein CIMG_04158 [Coccidioides immitis RS]
gi|392871432|gb|EAS33347.2| ATP-dependent RNA helicase DOB1 [Coccidioides immitis RS]
Length = 1074
Score = 283 bits (724), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 193/567 (34%), Positives = 304/567 (53%), Gaps = 70/567 (12%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F++D FQ+ SI + RG SV+VSA TS+GKT++AE A + N +R+ YT+P+K
Sbjct: 146 ARTWPFKLDPFQQVSIASIERGESVLVSAHTSAGKTVVAEYAIAHCLKNNQRVIYTSPIK 205
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 206 ALSNQKYREFASEFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR------ 257
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI + H +
Sbjct: 258 EVAWVVFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKTHSQPC 317
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL Y + + +++EKG K N + ++ G
Sbjct: 318 HVVYTDFRPTPLQHYLFPAGGEGIFLVVNEKGNFKEENFQKAM---------------GA 362
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+ AD N+ + S V +++ + ++S + P I F
Sbjct: 363 IADKKGDDPADANARGKGKGKNKKTNKGGEKGP---SDVFKIVRMIM-MKSYN--PVIVF 416
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF----RILYPDAVREPAIKGLL---- 499
F++R C+A L++ + D+ SE E+ K F +L + + P I+ +L
Sbjct: 417 SFSKRECEAHALTLKNLSFNDD---SEKEMVTKVFNSAIEMLSDEDKKLPQIENILPLLR 473
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+G+ HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +++ K + +
Sbjct: 474 RGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTNVRKFDGTSQ 533
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
LT +E QM+GRAGRRG+D+RG V+++ +++ + L S F Y M
Sbjct: 534 RWLTPSEFVQMSGRAGRRGLDDRGIVIMMVNEEMDPTVVKEIVRGEQDKLNSAFYLGYNM 593
Query: 620 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 679
+LNLL +V +S E ++E+ F + ++ + + EL ++
Sbjct: 594 ILNLL---RVEGISPEF-----------------MLERCFAQFQSASSVGTLEKELEDLE 633
Query: 680 KETDVLTSEISDDAIDRK---SRRLLS 703
+ + +T ISD+ R+ SR+LL+
Sbjct: 634 NQRENMT--ISDEGTIREYYDSRQLLA 658
>gi|260946459|ref|XP_002617527.1| hypothetical protein CLUG_02971 [Clavispora lusitaniae ATCC 42720]
gi|238849381|gb|EEQ38845.1| hypothetical protein CLUG_02971 [Clavispora lusitaniae ATCC 42720]
Length = 1066
Score = 283 bits (724), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 183/486 (37%), Positives = 264/486 (54%), Gaps = 49/486 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I R SV+VSA TS+GKT++AE A ++ +++R+ YT+P+K
Sbjct: 138 ARTYPFTLDPFQDTAISCIDRDESVLVSAHTSAGKTVVAEYAIAQSLRDKQRVIYTSPIK 197
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 198 ALSNQKYRELLAEFGD--VGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEVMR------ 249
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D SRG VWEE II P +V + LSAT+ NA E A WI +IH +
Sbjct: 250 EVAWVIFDEVHYMRDKSRGVVWEETIILLPDKVHHVFLSATIPNAMEFAEWIVKIHNQPC 309
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
++ + RP PL Y L P + G H L E+ G R
Sbjct: 310 HVVYTDFRPTPLQHY------LFPAAGD-GIH-----------LVVDEM-----GTFREE 346
Query: 392 NSRKHADMNSNNI------VTSFGQH--QLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 443
N +K SNNI S G+ Q K N +S + +++ ++ R P
Sbjct: 347 NFQKAMSSISNNIGDDPAATESRGKKNGQTFKGG-NKDGKSDIYKIVKMIYMKRYN---P 402
Query: 444 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL--- 499
I F F++R C++ + + ++ E S + L P+ RE P IK +L
Sbjct: 403 VIVFSFSKRDCESLALKMSKLDFNNDDERSALTKIFDNAISLLPEGDRELPQIKNILPLL 462
Query: 500 -KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+ HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K G
Sbjct: 463 RRGIGIHHSGLLPILKEIIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKG 522
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
++ E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y
Sbjct: 523 FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYN 582
Query: 619 MVLNLL 624
M+LNL+
Sbjct: 583 MILNLM 588
>gi|440637545|gb|ELR07464.1| ATP-dependent RNA helicase DOB1 [Geomyces destructans 20631-21]
Length = 1079
Score = 283 bits (724), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 174/480 (36%), Positives = 261/480 (54%), Gaps = 35/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A ++ F +D FQ+ +I + RG SV+VSA TS+GKT+ AE A ++ N +R+ YT+P+K
Sbjct: 150 ARVWPFELDPFQKVAIASIQRGESVLVSAHTSAGKTVTAEYAIAQSLQNNQRVIYTSPIK 209
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 210 ALSNQKYREFAAEFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR------ 261
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ N+ + A WI + H +
Sbjct: 262 EVGWVVFDEIHYMRDKARGVVWEETIILLPDKVRYVFLSATIPNSMQFAEWITKTHNQPC 321
Query: 332 ELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL YF A + ++DEKG +ST E K D
Sbjct: 322 HIVYTDFRPTPLQHYFFPAGADGIHLIVDEKGNFRQDNFD---KAMSTIEDKKGSDP--- 375
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
AD+N+ G+ + + N + + + + + P I F F
Sbjct: 376 -------ADINAKQ--KGRGKDKKTNKGGN----KETTDIYKIVRMIMVKHYNPVIVFSF 422
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+A + D+ E + V + D ++ P I+ +L +G+
Sbjct: 423 SKRECEAYALQMSSMAFNDDSEKAMVSKVFDSAIEMLSDEDKQLPQIQHILPLLRRGIGV 482
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ L+KV+FATET + G+NMPA+T V +S+ K + LT
Sbjct: 483 HHSGLLPILKETIEILFQENLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVSQRYLTP 542
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+E QM+GRAGRRG+D+RG V+++ +++ + L S F Y M+LNL+
Sbjct: 543 SEFVQMSGRAGRRGLDDRGIVIMMIDDKMEPAVAKEIVRGEQDKLNSAFYLGYNMILNLM 602
>gi|385302494|gb|EIF46623.1| dead-box family helicase required for mrna export from nucleus
[Dekkera bruxellensis AWRI1499]
Length = 991
Score = 283 bits (724), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 176/480 (36%), Positives = 256/480 (53%), Gaps = 39/480 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F++D FQ +SI R SV+VSA TS+GKT++AE A ++ +++R+ YT P+K
Sbjct: 65 AKTYPFKLDPFQDTSISCIDRNESVLVSAHTSAGKTVVAEYAIAQSLRDKQRVIYTAPIK 124
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE + FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 125 ALSNQKYRELQAEFGD--VGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEVMR------ 176
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P +V + LSAT+ NA E A WI +IH +
Sbjct: 177 EVAWVIFDEVHYMRDKIRGVVWEETIIMLPDKVHYVFLSATIPNAMEFAQWICKIHNQPC 236
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y + + ++DEK ++ E D GS
Sbjct: 237 HIVYTDFRPTPLQHYLFPANGDGIYLVVDEKSNFREENFQRAMACITNHE---GDDPGSI 293
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
NSRK + S +S + +++ +W + P I F F
Sbjct: 294 --NSRKGGKSWKGGVHDS---------------KSDIYKIVKMIWMKKYN---PVIVFSF 333
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+A + + E E + L D +E P IK +L +G+
Sbjct: 334 SKRDCEALAMKMSKLDFNTEDEKKMLTKIFHNAIDLLSDEDKELPQIKNILPLLKRGIGI 393
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K + ++
Sbjct: 394 HHSGLLPILKEIIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGTEFRWVSG 453
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + +L + L S F Y M+LNLL
Sbjct: 454 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMLKGQADRLDSAFHLGYNMILNLL 513
Score = 40.0 bits (92), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 102/246 (41%), Gaps = 24/246 (9%)
Query: 908 VLHMSFEYHDAVENYKEQRTKVARLKKKIARTEG---------FKEYKKIVDTVKFTEEK 958
+L+ + H +++ + K++ LKKK++ T +Y K V +
Sbjct: 725 ILNAINKMHINDKDFLQLEKKISILKKKVSSTSIANSPDLEXLVXQYSKFVSX----KNN 780
Query: 959 IKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGEN 1018
IK L+ + K + I+ + K LR I + + + G A I +
Sbjct: 781 IKILETKXKEVQSIIQLDDLKHRKRVLRRLGFISQDDVVQMK-------GRVACEISTGD 833
Query: 1019 ELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV-INVLD 1077
EL L ++ N +LKP Q AA+ + V E + + + EP T+ + +
Sbjct: 834 ELLLTELIFNGXFNELKPEQCAALLSCFVFEERSNEVPRLTPELAEPLKTLREMATKIAK 893
Query: 1078 EHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTI 1137
R +++ EK VE + +V +W G T+ ++ + +G L R+ RR
Sbjct: 894 VSRECKIDMIEKDYVE---SFRYELMEVVLSWCKGATFTQICKMTDVYEGSLIRMFRRLE 950
Query: 1138 DLLAQI 1143
+++ Q+
Sbjct: 951 EMIKQL 956
>gi|320162936|gb|EFW39835.1| SKIV2L2 protein [Capsaspora owczarzaki ATCC 30864]
Length = 997
Score = 283 bits (724), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 180/481 (37%), Positives = 254/481 (52%), Gaps = 33/481 (6%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQR ++ SV+VSA TS+GKT++AE A ++ +++R YTTP+K
Sbjct: 71 AKSYPFTLDPFQREAVRCLEHHESVLVSAHTSAGKTVVAEYAIAMSLRDKQRCIYTTPIK 130
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE E FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 131 ALSNQKYRELNEEFGD--VGLMTGDVTINPGASCLVMTTEILRSMLYRGSEVMR------ 182
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE +I P V + LSAT+ NA E A WI +H +
Sbjct: 183 EVAWVIFDEVHYMRDKERGVVWEETMILLPDNVHYVFLSATIPNAREFAQWICHLHRQPC 242
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLS-TSEVKPYKDGGS 388
++ +S RP PL Y L ++DEKG+ + + L+ T E GS
Sbjct: 243 HVVYTSFRPTPLQHYIFPGGGEGLYLVVDEKGEFRDDNFAKAMAILADTPEANALAASGS 302
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
+NS+ + G + K V ++D R P I F
Sbjct: 303 SNKNSKGGPGGKRKGAGGTGGPSDIFK---------IVKMIMD-------RSYQPVIVFS 346
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KGVA 503
F++R C+ + + ++ E V E+ L D + P + +L +G+
Sbjct: 347 FSKRECEEYALQMSKLDFNNDAEKKLVDEVFSNAIDSLSEDDRKLPQVDNILPLLRRGIG 406
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K IE LFQ GL+K +FATET + G+NMPA+T V +S+ K ++
Sbjct: 407 IHHSGLLPILKEVIEILFQEGLLKALFATETFSMGLNMPAKTVVFTSVRKFDGKDFRWVS 466
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
S E QM+GRAGRRG+D+RG V+L+ LL +PL S F SY M+LNL
Sbjct: 467 SGEYIQMSGRAGRRGLDDRGIVILMVDEKMEPAVAKNLLKGEADPLNSAFYLSYNMILNL 526
Query: 624 L 624
L
Sbjct: 527 L 527
>gi|307102833|gb|EFN51100.1| hypothetical protein CHLNCDRAFT_141429 [Chlorella variabilis]
Length = 1049
Score = 283 bits (724), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 174/477 (36%), Positives = 251/477 (52%), Gaps = 35/477 (7%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
Y F +D FQ++++ A G SV+V+A TS+GKT++AE A + + ++ YT+PLKALS
Sbjct: 66 YPFPLDPFQQTAVNALEAGHSVLVAAHTSAGKTVVAEYAFGMALRDGHKVVYTSPLKALS 125
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+RE +E FGD VGL+TGD IN A L+MTTEILR+M+Y+ +V +
Sbjct: 126 NQKYRELQEQFGD--VGLMTGDVTINPNASCLVMTTEILRSMMYRGTELVR------QLA 177
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KTELI 334
+IV DE+HYL D RG VWEE II PK + LSAT+ N+ E A W+ + HG ++
Sbjct: 178 LIVYDEIHYLRDKERGVVWEESIILAPKTARFAFLSATIPNSREFADWVAKTHGSPCHVV 237
Query: 335 TSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
+ RP PL Y + L ++D KG QL +EVK +R
Sbjct: 238 YTDYRPTPLEHYIFPAGGDGLFLVVDNKGTFREDNFQKAVAQLQEAEVK-------AKRP 290
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+ V G + + +R + R P I F F+++
Sbjct: 291 AGGGGGKGKKGGVQEAGAPKEESDIFKIVR------------MIAERRFDPVIVFSFSKK 338
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHHA 507
C+A + ++ +L +E E V+ + DA R P I G L +GV HH+
Sbjct: 339 ECEALAKQMQGLDLNEEAEKKLVDGIFSSAIDVLSDADRRLPQIAGALPMLRRGVGVHHS 398
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
G LPI K +E LFQ GL+KV+FATET + G+NMPA+T V + + K G + S E
Sbjct: 399 GLLPILKEVVEILFQEGLLKVLFATETFSTGLNMPAKTVVFTHVRKFDGGGFRWVRSGEY 458
Query: 568 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
QM+GRAGRRG+D++G +L+ ++ + L S+F Y M+LNLL
Sbjct: 459 IQMSGRAGRRGLDDKGVAILMMDEKLEPAVAKDMIKGAPDTLHSEFHLEYSMLLNLL 515
>gi|295659474|ref|XP_002790295.1| ATP-dependent RNA helicase DOB1 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226281747|gb|EEH37313.1| ATP-dependent RNA helicase DOB1 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 1080
Score = 283 bits (723), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 177/480 (36%), Positives = 265/480 (55%), Gaps = 34/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F +D FQ+ SI + RG SV+VSA TS+GKT++AE A ++ N +R+ YT+P+K
Sbjct: 149 AKTWSFTLDPFQQVSIASIERGESVLVSAHTSAGKTVVAEYAIAQSLRNNQRVIYTSPIK 208
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 209 ALSNQKYREFAAEFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR------ 260
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI ++H +
Sbjct: 261 EVAWVVFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKMHNQPC 320
Query: 332 ELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL YF A + ++DEKG + R+ + + S +E
Sbjct: 321 HVVYTDFRPTPLQHYFFPAGADGIHLIVDEKG--VFREENFHKAMESIAE---------- 368
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
K + +N + G+ + K + + + + + + ++ P I F F
Sbjct: 369 -----KQGEDPANPMAKRKGKGKDKKINKGEVSKGPS-DIFKIVRMIVMKNYNPVIVFSF 422
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLLK----GVAA 504
++R C+A + DE E V + D +E P IK +L G+
Sbjct: 423 SKRECEAFALQMSKMAFNDESEKDMVSKVFNSAIEMLSDEDKELPQIKHILPLLRLGIGV 482
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K + +T
Sbjct: 483 HHSGLLPILKETIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTSVRKFDGVSQRWITP 542
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+E QM+GRAGRRG+D+RG V+++ +++ + L S F Y M+LNLL
Sbjct: 543 SEFVQMSGRAGRRGLDDRGIVIMMINEEMDPTVAKEIVRGEQDKLNSAFHLGYNMILNLL 602
>gi|449505096|ref|XP_004162375.1| PREDICTED: LOW QUALITY PROTEIN: superkiller viralicidic activity
2-like 2-like [Cucumis sativus]
Length = 993
Score = 283 bits (723), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 174/480 (36%), Positives = 252/480 (52%), Gaps = 40/480 (8%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A ++ F +D FQ +I+ G SV+VSA TS+GKT++A A ++ N++R+ YT+P
Sbjct: 63 EPAKVFPFSLDPFQSEAIKCLETGESVMVSAHTSAGKTVVALYAIAMSLRNKQRVIYTSP 122
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+REF+E F D VGL+TGD I+ A L+MTTEI R+M Y+ +
Sbjct: 123 IKALSNQKYREFKEEFSD--VGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTR---- 176
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V I+ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H +
Sbjct: 177 --EVAWIIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWVAKVHHQ 234
Query: 331 -TELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL Y S L ++DEKG H + Q + + + P DG
Sbjct: 235 PCHIVYTDYRPTPLQHYIFPSGSEGLYLVVDEKG-HFRE----DSFQKALNALVPVSDGD 289
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
++ N + + L K ++ V +I R P I F
Sbjct: 290 KKKENGKWQKSLT------------LGKTGEDSDIFKMVKMII-------QRQYDPVILF 330
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL----KGV 502
F++R C+ + +L + E +E +L D + P + +L +G+
Sbjct: 331 SFSKRECEFLAMQMAKLDLNGDDEKVNIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGI 390
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH+G LPI K IE LFQ GL+K +FATET + G+NMPA+T V S++ K L
Sbjct: 391 GVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFSNVRKFDGDKFRWL 450
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
+S E QM+GRAGRRGID RG +L+ +L + L S F SY M+LN
Sbjct: 451 SSGEYIQMSGRAGRRGIDKRGICILMVDEKLEPSTAKMMLKGNADCLNSAFHLSYNMLLN 510
>gi|225680215|gb|EEH18499.1| ATP-dependent RNA helicase DOB1 [Paracoccidioides brasiliensis
Pb03]
Length = 1079
Score = 283 bits (723), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 262/480 (54%), Gaps = 34/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F +D FQ+ SI + RG SV+VSA TS+GKT++AE A ++ N +R+ YT+P+K
Sbjct: 149 AKTWSFTLDPFQQVSIASIERGESVLVSAHTSAGKTVVAEYAIAQSLRNNQRVIYTSPIK 208
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 209 ALSNQKYREFAAEFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR------ 260
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 331
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI ++H +
Sbjct: 261 EVAWVVFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKMHNQPC 320
Query: 332 ELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL YF A + ++DEKG + R+ + + S +E + G
Sbjct: 321 HVVYTDFRPTPLQHYFFPAGADGIHLIVDEKG--VFREENFHKAMESIAEKQ-----GED 373
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
N + + G+ + I I R V ++ P I F F
Sbjct: 374 PANPMAKRKGKGKDKKINKGEGSKGPSDIFKIVRMIV-----------MKNYNPVIVFSF 422
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLLK----GVAA 504
++R C+A + DE E V + D +E P IK +L G+
Sbjct: 423 SKRECEAFALQMSKMAFNDESEKDMVSKVFNSAIEMLSDEDKELPQIKHILPLLRLGIGV 482
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K + +T
Sbjct: 483 HHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVSQRWITP 542
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+E QM+GRAGRRG+D+RG V+++ +++ + L S F Y M+LNLL
Sbjct: 543 SEFVQMSGRAGRRGLDDRGIVIMMINEEMDPTVAKEIVRGEQDKLNSAFHLGYNMILNLL 602
>gi|302907162|ref|XP_003049585.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730521|gb|EEU43872.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1090
Score = 283 bits (723), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 187/552 (33%), Positives = 286/552 (51%), Gaps = 57/552 (10%)
Query: 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209
DE A ++F++D FQ S+ + R SV+VSA TS+GKT++AE A + +R+ YT+
Sbjct: 146 DEPARTWNFKLDPFQSLSVASIEREESVLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTS 205
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSES 269
P+KALSNQK+R+F FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 206 PIKALSNQKYRDFEAIFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR--- 260
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH
Sbjct: 261 ---EVAWVVFDEIHYMRDKTRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHH 317
Query: 330 KT-ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
+ ++ + RP PL YF + + ++DEK + +L ++
Sbjct: 318 QACHVVYTDFRPTPLQNYFFPAGGSGARLIVDEKSNFNEQNFNLVMQEV----------- 366
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
+K AD N N A S + ++I + P I
Sbjct: 367 -----EEKKGADPNDPTARQKGKGKNKKTNKGGADSGSDIAKIIRMTI---KKKFNPVIV 418
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KG 501
F F++R C+ + + D+ E + V+ + RE P I LL +G
Sbjct: 419 FNFSKRECENMAMNISSLSFNDDSEKAMVKKVFHSAIESLSEQDRELPQIVNLLPLLERG 478
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+ HH+G LPI K IE LFQ L+KV+FATET + G+NMPA+T V + ++K R
Sbjct: 479 IGVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVKRRP 538
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
LTS+E QMAGRAGRRG+D RG V+++ + +++ + L S F Y M+L
Sbjct: 539 LTSSEYIQMAGRAGRRGLDARGIVIMMIDDKLEPDTAKEIVTGHQDRLNSAFYLGYNMIL 598
Query: 622 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKE 681
NLL ++ +S E ++E+ F + + + + + +L +Q+E
Sbjct: 599 NLL---RIEAISPEF-----------------MLERCFHQFQNAASVPSLEKDLMSLQQE 638
Query: 682 TDVLTSEISDDA 693
D ++ I D+A
Sbjct: 639 RDTMS--IPDEA 648
>gi|300707105|ref|XP_002995775.1| hypothetical protein NCER_101250 [Nosema ceranae BRL01]
gi|239604987|gb|EEQ82104.1| hypothetical protein NCER_101250 [Nosema ceranae BRL01]
Length = 928
Score = 283 bits (723), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 197/526 (37%), Positives = 268/526 (50%), Gaps = 86/526 (16%)
Query: 137 NEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAV 196
NE +EF A Y+F +D FQ+ S+ A R SV+VSA TSSGKT++AE A
Sbjct: 56 NEFQEFT---------AKTYNFELDIFQKISLCALERDESVLVSAHTSSGKTVVAEYAIA 106
Query: 197 ATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRN 256
++ + +R+ YT+P+KALSNQK+RE E F D VGL+TGD IN A L+MTTEILRN
Sbjct: 107 MSLRDNQRVVYTSPIKALSNQKYRELLEEFTD--VGLMTGDVTINPGASCLVMTTEILRN 164
Query: 257 MLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316
MLY+ ++ ++ I+ DE+HY+ D RG VWEE II P V++I LSAT+ N
Sbjct: 165 MLYRGSEVIR------EIHWIIFDEIHYMRDRERGVVWEETIILLPSHVRMIFLSATIPN 218
Query: 317 ADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQL 375
A E A WI I + ++ + +R PL YF KT L + + H N
Sbjct: 219 ALEFAEWISYIQKQVVHVVYTEKRITPLVHYF--KTDKLYTIKDSEFHKNE--------- 267
Query: 376 STSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH 435
+K K G R N R N I+ IR
Sbjct: 268 FYKAMKTVKKG---RINER---------------------NIISVIRDVS---------- 293
Query: 436 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE--- 492
LPA+ F F R+ C+ L D L DE E E FR D++R+
Sbjct: 294 ------LPAVIFSFRRKDCEYFAIRLIDDYLNDE----EKEAVNTVFRNAI-DSLRKEDR 342
Query: 493 --PAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
P I LL+G+ HH+G LPI K +E LFQ GL+KV+FATET + G+NMPA++
Sbjct: 343 ELPIINNILPLLLRGIGIHHSGLLPIIKEIVEILFQEGLLKVLFATETFSIGLNMPAKSV 402
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606
+ +SL K LTS E QM+GRAGRRGID +G VV + + E L
Sbjct: 403 IFTSLKKFDGVKTRHLTSAEYIQMSGRAGRRGIDEKGIVVSLLSDVMTYAELKDLFSCSK 462
Query: 607 EPLVSQFTASYGMVLNLL--AGAKVMHLSNES-DDMKALQAGRSLE 649
+ L+S F +Y M+LNL+ G ++L + S +A + G+ E
Sbjct: 463 DNLISAFRLTYNMILNLMRVEGLDPLYLISRSFHHFQAFKKGKEKE 508
>gi|66819831|ref|XP_643574.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
gi|60471611|gb|EAL69567.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
Length = 1128
Score = 283 bits (723), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 178/482 (36%), Positives = 253/482 (52%), Gaps = 49/482 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F++D FQ +SI R SV+VSA TS+GKT++AE + + + +R+ YT+P+K
Sbjct: 205 ARTYPFKLDPFQATSIACIERNESVLVSAHTSAGKTVVAEYSIATALRDGQRVIYTSPIK 264
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFR+ +ETF D VGL+TGD IN A L+MTTEILR+MLY+ SE+ +
Sbjct: 265 ALSNQKFRDLQETFQD--VGLMTGDITINANASCLVMTTEILRSMLYR-----GSET-MR 316
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HYL D RG VWEE II P V+ + LSAT+ NA E A WI +IH +
Sbjct: 317 EVSWVIFDEIHYLRDKERGVVWEETIILLPDSVKFVFLSATIPNAREFAAWIAKIHKQPC 376
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP+PL Y S L ++DE G + L E+ + G SR
Sbjct: 377 HVVYTEYRPIPLQHYIFPSGGDGLHLVVDENGVFREENFLKSLSNLQQPEMGG-QSGASR 435
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
+R + IV + R+ P I F F
Sbjct: 436 KRGGGNKGPSDCYKIVK----------------------------MIMERNYQPVIIFSF 467
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAA 504
+++ C+ + + ++ E + VE L + PA+ +L +G+
Sbjct: 468 SKKECETYALQMSKLDFNNDDEKNAVETIFNNAIDSLSESDKQLPAVINILPLLKRGIGI 527
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HHAG LPI K IE LFQ G +K +FATET + G+NMPA+T + +S+ K G ++
Sbjct: 528 HHAGLLPILKEIIEILFQYGYIKALFATETFSIGLNMPAKTVIFTSVRKFDGEGMRWISG 587
Query: 565 NELFQMAGRAGRRGIDNRGHVVL-VQTPYEGAEECCKLLFAG-VEPLVSQFTASYGMVLN 622
E QM+GRAGRRG+D RG V+L V E A K + G + L S F Y M+LN
Sbjct: 588 GEYIQMSGRAGRRGLDERGIVILMVDEKMEPA--IAKGMVKGQADRLTSSFWIGYSMLLN 645
Query: 623 LL 624
+L
Sbjct: 646 ML 647
>gi|359478571|ref|XP_002279903.2| PREDICTED: helicase SKI2W-like [Vitis vinifera]
Length = 1379
Score = 283 bits (723), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 198/574 (34%), Positives = 292/574 (50%), Gaps = 49/574 (8%)
Query: 85 DDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGN 144
D+ EA+ D+ V DEI + + D + R++ + V + + +
Sbjct: 308 DEVEASSNVGDLESSVLDEILSVESGSKPGLDGTSDDGGRQKKEAWAVSGGNEGIADHFH 367
Query: 145 EMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRR 204
E+ V ++A + F +D FQ+ +I +G SV V+A TS+GKT++AE A + R
Sbjct: 368 EL--VPDMALDFPFELDTFQKEAIYYLEKGDSVFVAAHTSAGKTVVAEYAFALASKHCTR 425
Query: 205 IFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGM 264
YT P+K +SNQK+R+F F +VGLLTGD ++ EA LIMTTEILR+MLY+ +
Sbjct: 426 AVYTAPIKTISNQKYRDFCGKF---DVGLLTGDVSLRPEASCLIMTTEILRSMLYKGADI 482
Query: 265 VSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324
+ D++ ++ DEVHY++D+ RG VWEE+II P+ + I+ LSATV N E A WI
Sbjct: 483 IR------DIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINIVLLSATVPNTIEFADWI 536
Query: 325 GQIHGKTELIT-SSRRPVPLT---------WYFSTKTALLP--LLDEKGKHMNRKLSLNY 372
G+ K +T +++RPVPL + LP L K H + LS
Sbjct: 537 GRTKQKQIRVTGTTKRPVPLEHCIFYSGELYKICESETFLPQGLKTAKDVHKKKNLSTGG 596
Query: 373 LQLSTSEVKP--YKDGG-SRRRNSRKHADMNS-------NNIVTSFGQHQLSKNSIN--A 420
T P DG ++RR + N N + G +Q S S +
Sbjct: 597 GGSGTYSGPPSAAHDGARAQRRENPGRGKQNKYSGSQKVGNFYGTGGGNQNSSGSQSNWG 656
Query: 421 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK 480
RRS+ + + L + +LP + F F++ CD + + +L E E+ + +
Sbjct: 657 SRRSEASLWLLLINKLSKKSLLPVVIFCFSKNRCDISADKMTGIDLTSSSEKHEIHVFCE 716
Query: 481 R-FRIL------YPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE 533
R F L P +R ++ L +G+ HHAG LPI K +E LF RG+VKV+F+TE
Sbjct: 717 RAFSRLKGSDRNLPQVIRVQSL--LRRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTE 774
Query: 534 TLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QT 590
T A G+N PART V SL K QL E QMAGRAGRRG+D G VV++ +
Sbjct: 775 TFAMGVNAPARTVVFDSLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVMCRDEI 834
Query: 591 PYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
P E + ++ L SQF +Y M+L+LL
Sbjct: 835 PDE--RDLKHVIVGSATRLASQFRLTYIMILHLL 866
>gi|326436235|gb|EGD81805.1| DEAD/DEAH box helicase [Salpingoeca sp. ATCC 50818]
Length = 1034
Score = 282 bits (722), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 186/497 (37%), Positives = 256/497 (51%), Gaps = 57/497 (11%)
Query: 143 GNEMIDVDEL------ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAV 196
G+E DE A Y F +D FQR S++ R SV+VSA TS+GKT++AE A
Sbjct: 114 GHEYTPFDETPAPEKPAKTYPFTLDPFQRVSVQCLERNESVLVSAHTSAGKTVVAEYAIA 173
Query: 197 ATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRN 256
++ + +R+ YT+P+KALSNQK+RE E F D VGL+TGD+ IN A L+MTTEILR+
Sbjct: 174 MSLRDGQRVIYTSPIKALSNQKYRELAEEFKD--VGLMTGDTTINPSASCLVMTTEILRS 231
Query: 257 MLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316
MLY+ ++ +V +V DE+HY+ D +RG VWEE +I P V + LSAT+ N
Sbjct: 232 MLYRGSEIMR------EVGWVVFDEIHYMRDANRGVVWEETLILLPDNVHYVFLSATIPN 285
Query: 317 ADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQL 375
A + A WI IH + ++ + RP PL Y A +G ++
Sbjct: 286 ALQFAQWISHIHNQPCHVVYTDYRPTPLQHYIYPSGA-------EGLYLI---------- 328
Query: 376 STSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLS--KNSINAIRRSQVPQVIDTL 433
V P DGG R +N + Q+S N A RS+ I +
Sbjct: 329 ----VGP--DGGFR-----------DDNFTKAMASMQISGAANKGRAKGRSKGQSNISAI 371
Query: 434 -WHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 492
+ R + P I F F++R C+ L + E E +EL + R
Sbjct: 372 VGMIMKRKLHPCIVFSFSKRECETYAMDLSKLDFNTEDEKKNIELIFTNAIASLSEEDRA 431
Query: 493 -PAIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
P+I+ LL +GV HH+G LPI K E LF GLVKV+FATET A G+NMPA+T V
Sbjct: 432 LPSIENLLPLMKRGVGVHHSGLLPIMKEVTELLFGEGLVKVLFATETFAMGLNMPAKTVV 491
Query: 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
S++ K L+S E QM+GRAGRRG+D G V+L+ + +L +
Sbjct: 492 FSNVKKFDGKEFRPLSSGEYIQMSGRAGRRGLDTNGIVILMMQEKLEPQNAKGMLQGQAD 551
Query: 608 PLVSQFTASYGMVLNLL 624
L S F +Y MVLNLL
Sbjct: 552 KLNSAFRLTYNMVLNLL 568
>gi|195115276|ref|XP_002002190.1| GI13953 [Drosophila mojavensis]
gi|193912765|gb|EDW11632.1| GI13953 [Drosophila mojavensis]
Length = 1063
Score = 282 bits (722), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 190/577 (32%), Positives = 295/577 (51%), Gaps = 61/577 (10%)
Query: 70 ADEAADEYDDDIDDDDDEEAADEYDDVSGEVSD-EIQQSDDEFEVSSDSSPAPSWREEFK 128
+D+ E +D ++D + E D+++ + SD E++ ++ D + R
Sbjct: 60 SDKEQTEENDVKEEDAKRQRVKEVDEIANDTSDNEVKNEKEDNPEELDDCAVDALRVRIV 119
Query: 129 WQRV---EKLCNEVKEFGN-EMIDVDELASI----YDFRIDKFQRSSIEAFLRGSSVVVS 180
++ E +EV + E I + + Y F +D FQ+ +I SV+VS
Sbjct: 120 THQLVSPESCTHEVAAHPDQEYIPLQPFTGVPAKQYPFVLDPFQKQAILCIDNSQSVLVS 179
Query: 181 APTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI 240
A TS+GKT++AE A ++A ++R+ YTTP+KALSNQKFREF + F D VGL+TGD I
Sbjct: 180 AHTSAGKTVVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFED--VGLVTGDVTI 237
Query: 241 NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY 300
N A LIMTTEILRNMLY+ ++ +V ++ DE+HY+ D RG VWEE +I
Sbjct: 238 NPSASCLIMTTEILRNMLYRGSEIMR------EVGWVIFDEIHYMRDKERGVVWEETLIL 291
Query: 301 CPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF--STKTALLPLL 357
P V+ + LSAT+ NA + A W+ +H + ++ + RP PL Y + + ++
Sbjct: 292 LPDNVRYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIV 351
Query: 358 DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNS 417
DEKG+ + L+ + D R+ + H + +N
Sbjct: 352 DEKGQFKEENFTTAMAVLANAGEAAKGDQKGRKGGIKGHNEGQTN--------------- 396
Query: 418 INAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEV 475
+ + + R P I F F+++ C+ A+Q + D N +DE ++ +
Sbjct: 397 -----------IFKIVKMIMERHFAPVIIFSFSKKDCEVYAMQMAKLDFNTVDEKKLVD- 444
Query: 476 ELALKRFRILYPDAVREPAIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 531
E+ +L D R P ++ +L +G+ HH G LPI K IE LF GL+K +FA
Sbjct: 445 EVFKNAMDVLSEDDRRLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFA 504
Query: 532 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV--- 588
TET A G+NMPART + ++ K ++S E QMAGRAGRRG+D++G V+L+
Sbjct: 505 TETFAMGLNMPARTVLFTAPRKFDGKDFRWISSGEYIQMAGRAGRRGLDDKGIVILMIDE 564
Query: 589 -QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+P G E ++ + L S F +Y MVLNLL
Sbjct: 565 KVSPVVGRE----IVQGQADTLNSAFHLTYNMVLNLL 597
>gi|358399456|gb|EHK48799.1| hypothetical protein TRIATDRAFT_53649 [Trichoderma atroviride IMI
206040]
Length = 1037
Score = 282 bits (722), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 194/553 (35%), Positives = 291/553 (52%), Gaps = 59/553 (10%)
Query: 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209
+E A Y F++D FQ S+ + R SV+VSA TS+GKT++AE A + +R+ YT+
Sbjct: 95 EEPARTYPFKLDPFQSLSVASIERDESVLVSAHTSAGKTVVAEYAVAQCLKRNQRVIYTS 154
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSES 269
P+KALSNQK+R+F FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 155 PIKALSNQKYRDFEAIFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR--- 209
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH
Sbjct: 210 ---EVAWVVFDEIHYMRDKTRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHH 266
Query: 330 KT-ELITSSRRPVPLTWYF---STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
+ ++ + RP PL YF K A + ++DEKG + N + N+ L +EV+ K
Sbjct: 267 QACHVVYTDFRPTPLQNYFYPAGGKGARM-VVDEKG-YFNEE---NF-NLVMAEVEEKKG 320
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
++ + + IN I R + R+ P I
Sbjct: 321 SDPADFTAKMKGKGKNKKTNKGGADE---GSDINKIIRMTI-----------KRNFNPVI 366
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----K 500
F F++R + + + N D+ E + V + + RE P I+ LL K
Sbjct: 367 VFNFSKREVENMAVKISNLNFNDDSEKAMVNKVFQSAIESLSEQDRELPQIQNLLPLLQK 426
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
GV HH+G LPI K IE LFQ L+KV+FATET + G+NMPA+T V + ++K
Sbjct: 427 GVGVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVNIR 486
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
+TS+E QMAGRAGRRG+D RG V+++ + +++ + L S F Y M+
Sbjct: 487 PITSSEYVQMAGRAGRRGLDARGVVIMMIDDKLEPDTAKQIVTGQQDRLNSAFYLGYNMI 546
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
LNLL ++ +S E ++E+ F + + + + + +L +Q+
Sbjct: 547 LNLL---RIEAISPEF-----------------MLERCFHQFQNAASVPSLEKDLMALQQ 586
Query: 681 ETDVLTSEISDDA 693
E D LT I D+A
Sbjct: 587 EKDALT--IPDEA 597
>gi|322704335|gb|EFY95931.1| ATP-dependent RNA helicase DOB1 [Metarhizium anisopliae ARSEF 23]
Length = 1098
Score = 282 bits (722), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 190/552 (34%), Positives = 288/552 (52%), Gaps = 57/552 (10%)
Query: 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209
DE A ++F++D FQ S+ + R S++VSA TS+GKT++AE A + +R+ YT+
Sbjct: 152 DEPARTWNFKLDPFQSLSVASIERDESILVSAHTSAGKTVVAEYAVAQCLKRNQRVIYTS 211
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSES 269
P+KALSNQK+R+F FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 212 PIKALSNQKYRDFEAIFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR--- 266
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH
Sbjct: 267 ---EVAWVVFDEIHYMRDKTRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHH 323
Query: 330 KT-ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
+ ++ + RP PL YF S ++DEKG + + L E++ K
Sbjct: 324 QACHVVYTDFRPTPLQNYFYPSGGKGARIVVDEKGN-----FNEHNFNLVMKEIEDKKGA 378
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
GS N+++ + I + I+ I R + + + P I
Sbjct: 379 GSNDINAKQRGKGKNKKINKGGVDE---GSDIHKIIRMTIKKKFN-----------PVIV 424
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KG 501
F F++ C+ + + D+ E + V + RE P IK LL +G
Sbjct: 425 FNFSKAECENMALNISSLSFNDDSEKAMVRKVFHSAIESLSEQDRELPQIKNLLPLLERG 484
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
V HH+G LPI K IE LFQ L+KV+ ATET + G+NMPA+T V + ++K R
Sbjct: 485 VGVHHSGLLPILKETIEILFQESLLKVLVATETFSIGLNMPAKTVVFTQVTKWDGVKRRP 544
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
+TS+E QMAGRAGRRG+D RG V+++ + ++ + L S F Y M+L
Sbjct: 545 ITSSEYIQMAGRAGRRGLDARGVVIMMIDDKLEPDTAKGIVTGHQDKLNSAFYLGYNMIL 604
Query: 622 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKE 681
NLL ++ +S E ++E+ F + + + + + EL +Q+E
Sbjct: 605 NLL---RIEAISPEF-----------------MLERCFHQFQNAASVPSLEKELMSLQQE 644
Query: 682 TDVLTSEISDDA 693
D L+ I D+A
Sbjct: 645 RDGLS--IPDEA 654
>gi|401886988|gb|EJT50996.1| hypothetical protein A1Q1_07790 [Trichosporon asahii var. asahii
CBS 2479]
Length = 1201
Score = 282 bits (722), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 193/565 (34%), Positives = 279/565 (49%), Gaps = 97/565 (17%)
Query: 108 DDEFEVSSDSSPAPSWREEFK-------WQRVEKLCNEVKEFGNEMIDVDELASIYDFRI 160
DD + +P P+ R++F+ W V + E+ F +E+ V E+A Y F +
Sbjct: 234 DDLLPIGRLPAPPPA-RKQFEKVAGKQEWAHVVDVNKELVNF-HEL--VPEMARQYPFEL 289
Query: 161 DKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFR 220
D FQ+ ++ G SV V+A TS+GKT++AEA YT+P+KALSNQKFR
Sbjct: 290 DNFQKEAVYRLEMGDSVFVAAHTSAGKTVVAEA------------IYTSPIKALSNQKFR 337
Query: 221 EFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLD 280
+F++TF + VG+LTGD IN E LIMTTEILR+MLY+ ++ DV+ ++ D
Sbjct: 338 DFKQTFDPSTVGILTGDVQINPEGSCLIMTTEILRSMLYKGADLIR------DVEFVIFD 391
Query: 281 EVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELITSSRR 339
EVHY++D RG VWEE+II P+ V II LSATV N E A W+G+ K +I++ R
Sbjct: 392 EVHYVNDAERGVVWEEVIIMLPEHVNIILLSATVPNTKEFADWVGRTKRKNIYVISTPMR 451
Query: 340 PVPLTWYFSTKTALLPLLDEKGKHMN-----------RK--------------------- 367
PVPL Y + ++D KG+ + RK
Sbjct: 452 PVPLEHYLWAGKEIHKIVDSKGQFLGSGYKSAGDALRRKQDKEREAAGLPPLTRTGGRGG 511
Query: 368 LSLNYLQLSTSEVKPY-KDGGSRRRNSR---KHADMNSNNIVTSFGQHQLSKNSINAIRR 423
+ L T P+ + GG R +R + A +N G + + R
Sbjct: 512 APVKARDLPTGRSAPFSRVGGGRSHTNRGGGQGAPAPANGGRGGGGGGRGGRGGGRPGGR 571
Query: 424 SQVPQVIDT--LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR 481
Q+ Q + T + +LR +LP + F+F+++ C+ Q L +L D E SEV + +R
Sbjct: 572 GQLDQNVWTHLIAYLRKNHLLPVVNFVFSKKRCEEYAQTLSTTDLCDSKEKSEVHVTWER 631
Query: 482 FRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 541
L K +E LF RGLVKV+FATET A G+NM
Sbjct: 632 ---------------------------ALTRLKEVVEILFARGLVKVLFATETFAMGVNM 664
Query: 542 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE--GAEECC 599
PA++ V S + K + L E QMAGRAGRRG+D G V+++ E +E
Sbjct: 665 PAKSVVFSGIRKHDGTTFRNLLPGEYTQMAGRAGRRGLDTTGTVIILNGGDELPAQQELQ 724
Query: 600 KLLFAGVEPLVSQFTASYGMVLNLL 624
+++ L SQF +Y M+LNLL
Sbjct: 725 EMMLGVPNRLTSQFRLTYNMILNLL 749
>gi|406695222|gb|EKC98533.1| hypothetical protein A1Q2_07129 [Trichosporon asahii var. asahii
CBS 8904]
Length = 1201
Score = 282 bits (722), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 193/565 (34%), Positives = 279/565 (49%), Gaps = 97/565 (17%)
Query: 108 DDEFEVSSDSSPAPSWREEFK-------WQRVEKLCNEVKEFGNEMIDVDELASIYDFRI 160
DD + +P P+ R++F+ W V + E+ F +E+ V E+A Y F +
Sbjct: 234 DDLLPIGRLPAPPPA-RKQFEKVAGKQEWAHVVDVNKELVNF-HEL--VPEMARQYPFEL 289
Query: 161 DKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFR 220
D FQ+ ++ G SV V+A TS+GKT++AEA YT+P+KALSNQKFR
Sbjct: 290 DNFQKEAVYRLEMGDSVFVAAHTSAGKTVVAEA------------IYTSPIKALSNQKFR 337
Query: 221 EFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLD 280
+F++TF + VG+LTGD IN E LIMTTEILR+MLY+ ++ DV+ ++ D
Sbjct: 338 DFKQTFDPSTVGILTGDVQINPEGSCLIMTTEILRSMLYKGADLIR------DVEFVIFD 391
Query: 281 EVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELITSSRR 339
EVHY++D RG VWEE+II P+ V II LSATV N E A W+G+ K +I++ R
Sbjct: 392 EVHYVNDAERGVVWEEVIIMLPEHVNIILLSATVPNTKEFADWVGRTKRKNIYVISTPMR 451
Query: 340 PVPLTWYFSTKTALLPLLDEKGKHMN-----------RK--------------------- 367
PVPL Y + ++D KG+ + RK
Sbjct: 452 PVPLEHYLWAGKEIHKIVDSKGQFLGSGYKSAGDALRRKQDKEREAAGLPPLTRTGGRGG 511
Query: 368 LSLNYLQLSTSEVKPY-KDGGSRRRNSR---KHADMNSNNIVTSFGQHQLSKNSINAIRR 423
+ L T P+ + GG R +R + A +N G + + R
Sbjct: 512 APVKARDLPTGRSAPFSRVGGGRSHTNRGGGQGAPAPANGGRGGGGGGRGGRGGGRPGGR 571
Query: 424 SQVPQVIDT--LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR 481
Q+ Q + T + +LR +LP + F+F+++ C+ Q L +L D E SEV + +R
Sbjct: 572 GQLDQNVWTHLIAYLRKNHLLPVVNFVFSKKRCEEYAQTLSTTDLCDSKEKSEVHVTWER 631
Query: 482 FRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 541
L K +E LF RGLVKV+FATET A G+NM
Sbjct: 632 ---------------------------ALTRLKEVVEILFARGLVKVLFATETFAMGVNM 664
Query: 542 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE--GAEECC 599
PA++ V S + K + L E QMAGRAGRRG+D G V+++ E +E
Sbjct: 665 PAKSVVFSGIRKHDGTTFRNLLPGEYTQMAGRAGRRGLDTTGTVIILNGGDELPAQQELQ 724
Query: 600 KLLFAGVEPLVSQFTASYGMVLNLL 624
+++ L SQF +Y M+LNLL
Sbjct: 725 EMMLGVPNRLTSQFRLTYNMILNLL 749
>gi|281209286|gb|EFA83459.1| DEAD/DEAH box helicase [Polysphondylium pallidum PN500]
Length = 1275
Score = 282 bits (722), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 197/556 (35%), Positives = 286/556 (51%), Gaps = 42/556 (7%)
Query: 82 DDDDDEEAADEYDDVSGEVSDEIQQSDDEF---EVSSDSSPAPSWREEFKWQRVEKLCNE 138
D + E D D V GE S ++ + E+ + +S A + E +R + N+
Sbjct: 286 DKESSETVDDSLDKVIGESSSSLENKLESLSIEEIKAKASEATTAISE-NVERKQWAFND 344
Query: 139 VKEFGNEMIDVDELASI-YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVA 197
KE ++ +I Y F +D FQ+ +I +G SV +SA TS+GKT+IAE A
Sbjct: 345 TKEITTPFKELITNPAIEYPFELDSFQKQAIYHMEKGDSVFISAHTSAGKTVIAEYAIAM 404
Query: 198 TVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNM 257
N R YT+P+KALSNQKFR+F+ TF ++VGL+TGD ++N A L++TTEILR+M
Sbjct: 405 AAKNMTRAIYTSPIKALSNQKFRDFKNTF--SSVGLITGDVSVNPSAACLVLTTEILRSM 462
Query: 258 LYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA 317
LY+ ++ D++ ++ DEVHYL+DI RG VWEE+II P V+I+ LSATV+N
Sbjct: 463 LYKGADLIR------DIEWVIFDEVHYLNDIDRGVVWEEVIIMLPAHVKIVLLSATVSNP 516
Query: 318 DELAGWIGQIHG-KTELITSSRRPVPLTWYFSTKTA-LLPLLDEKGKHMNRKLSLNYLQL 375
E A WIG+ +I +++RPVPL Y T++ L ++D + L
Sbjct: 517 LEFADWIGRTKKMHIYVIGTTKRPVPLEHYIHTQSNDLFKIVDSSRRF-----------L 565
Query: 376 STSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH 435
S K Y N + G +K R S ++I
Sbjct: 566 SDGYNKAYASIFKETTNQPGGGNRGGGRGGNMAGGGGGAK------RSSGWSKLI---MM 616
Query: 436 LRSRDMLPAIWFIFNRRGC-DAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAV 490
L+ ++ LP I F F++ C D A + L E S +++ +L R R +
Sbjct: 617 LKEKNQLPVIVFSFSKAKCQDYAFSLGSNVILTTSGERSIIKVFIEESLARLRAEDKELP 676
Query: 491 REPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
+ I+ L +G+ HH G LPI K +E LF + LVKV+FATET A G+NMPA+T V S
Sbjct: 677 QILQIRDFLERGIGVHHGGLLPIVKELVEILFSKSLVKVLFATETFAMGVNMPAKTVVYS 736
Query: 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV-EP 608
+ K + L E QM+GRAGRRG+D G V+L + + + GV
Sbjct: 737 HIRKHDGTQFRDLLPGEYTQMSGRAGRRGLDAVGTVILACWKDLPEQTTMESMILGVPSK 796
Query: 609 LVSQFTASYGMVLNLL 624
L SQF +Y M+LNLL
Sbjct: 797 LHSQFRLTYNMILNLL 812
>gi|242009954|ref|XP_002425746.1| helicase, putative [Pediculus humanus corporis]
gi|212509650|gb|EEB13008.1| helicase, putative [Pediculus humanus corporis]
Length = 1011
Score = 282 bits (722), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 178/487 (36%), Positives = 265/487 (54%), Gaps = 62/487 (12%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ +I SV+VSA TS+GKT++AE + ++ +++R+ YTTP+K
Sbjct: 108 AKEYKFVLDAFQEEAILCIENNQSVLVSAHTSAGKTVVAEYSIAKSLRDKQRVIYTTPIK 167
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFREF E FG+ VGL+TGD IN+ A +LIMTTEILRNMLY+ ++
Sbjct: 168 ALSNQKFREFTEEFGE--VGLITGDVTINQNASLLIMTTEILRNMLYRGSEVMR------ 219
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HY+ D RG VWEE +I P V + LSAT+ NA + A W+ +H +
Sbjct: 220 EVGWVIFDEIHYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVAHLHNQPC 279
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHM--NRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL Y + + +LDE GK N ++ LQ + G
Sbjct: 280 HVVYTDYRPTPLQHYIFPAGGDGIHLVLDENGKFKEDNFNTAMAVLQ----------NAG 329
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+ R +N NN R S +++ + R+ P I F
Sbjct: 330 DAAKGDR----LNRNN-----------------ARGSNAFKIVKMIME---RNFAPVICF 365
Query: 448 IFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KG 501
F+++ C+A A+Q + D N ++E ++ + E+ +L + + P ++ +L +G
Sbjct: 366 SFSKKDCEAYALQMAKLDFNSVEEKKLVD-EVFNNAMDVLSEEDRKLPQVENVLPLLRRG 424
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+ HH G LPI K IE LF GL+K +FATET A G+NMPART + + K
Sbjct: 425 IGIHHGGLLPILKETIEILFAEGLIKALFATETFAMGLNMPARTVLFTGCRKFDGKDYRF 484
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASY 617
+TS E QM+GRAGRRG+D++G V+L+ +P G E ++ +P+ S F +Y
Sbjct: 485 VTSGEYIQMSGRAGRRGLDDKGIVILMIDEQVSPSVGRE----IVKGAPDPINSAFHLTY 540
Query: 618 GMVLNLL 624
MVLNLL
Sbjct: 541 NMVLNLL 547
>gi|312380113|gb|EFR26198.1| hypothetical protein AND_07887 [Anopheles darlingi]
Length = 1062
Score = 282 bits (721), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 176/486 (36%), Positives = 254/486 (52%), Gaps = 53/486 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQR +I SV+VSA TS+GKT++AE A ++A+++R+ YTTP+K
Sbjct: 130 AKEYPFVLDPFQREAILCIENNQSVLVSAHTSAGKTVVAEYAIAKSLADKQRVIYTTPIK 189
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF E F D VGL+TGD IN A LIMTTEILRNMLY+ ++
Sbjct: 190 ALSNQKYREFHEEFKD--VGLVTGDVTINPTASCLIMTTEILRNMLYRGSEIMR------ 241
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HY+ D RG VWEE +I P V + LSAT+ NA + A W+ +H +
Sbjct: 242 EVGWVIFDEIHYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCHLHKQPC 301
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL Y + ++DEKG K N ++N LQ + K
Sbjct: 302 HVVYTDYRPTPLQHYLFPVGGDGIHLVVDEKGQFKEDNFNTAMNVLQSAGEAAK------ 355
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
G + K + A S + + + R+ P I F
Sbjct: 356 ---------------------GDQKGRKGGLKATSSSGETNIFKIVKMIMERNFAPVIIF 394
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KGV 502
F+++ C+ + + E V E+ +L + + P ++ +L +G+
Sbjct: 395 SFSKKDCEVYAMQMAKLDFNSTVEKKLVDEVFNNAMDVLTEEDRQLPQVENVLPLLRRGI 454
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH G LPI K IE LF GL+K +FATET A G+NMPART + +S K +
Sbjct: 455 GIHHGGLLPILKETIEILFGEGLLKALFATETFAMGLNMPARTVLFTSPRKFDGKDFRWV 514
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
TS E QM+GRAGRRG+D++G V+L+ +P G E ++ +P+ S F +Y
Sbjct: 515 TSGEYIQMSGRAGRRGLDDKGIVILMIDEAVSPAVGKE----IVQGKADPINSAFHLTYN 570
Query: 619 MVLNLL 624
MVLNLL
Sbjct: 571 MVLNLL 576
>gi|357157387|ref|XP_003577781.1| PREDICTED: superkiller viralicidic activity 2-like 2-like
[Brachypodium distachyon]
Length = 1005
Score = 282 bits (721), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 176/487 (36%), Positives = 255/487 (52%), Gaps = 39/487 (8%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E+A Y F++D FQ SI R SV+VSA TS+GKT IAE A + +++R+ YT+P
Sbjct: 77 EMAKTYPFQLDPFQSVSIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSP 136
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
LKALSNQK+RE + F D VGL+TGD + A L+MTTEILR MLY+ ++
Sbjct: 137 LKALSNQKYRELSQEFSD--VGLMTGDVTLQPNATCLVMTTEILRAMLYRGSEVIK---- 190
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V ++ DE+HY+ D RG VWEE I++ P ++++ LSAT++NA E A WI +H +
Sbjct: 191 --EVGWVIFDEIHYMKDRERGVVWEESIVFLPTAIKMVFLSATMSNATEFAEWICNLHKQ 248
Query: 331 -TELITSSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK-PYKDG 386
++ + RP PL Y + L ++DE G+ N+L+L + K P +
Sbjct: 249 PCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFRED----NFLKLQDTFAKQPSQQD 304
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
G RN G + S + S + + + R P I
Sbjct: 305 G---RNG---------------GGPKASGRIAKGGKASGTSDIYRIVKMIMERKFQPVII 346
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KG 501
F F+RR C+ + + E E +E + + R PAI+ +L +G
Sbjct: 347 FSFSRRECEHHAMSMSKLDFNTEEEKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRG 406
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+A HH+G LP+ K +E LFQ GLVK +FATET A G+NMPA+T V +S+ K
Sbjct: 407 IAVHHSGLLPLIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRY 466
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
+ S E QM+GRAGRRG D RG V++ ++ PL+S F SY +L
Sbjct: 467 IASGEYIQMSGRAGRRGKDERGICVIMIDEKMEMSVIKDMVLGKPAPLISTFRLSYYTIL 526
Query: 622 NLLAGAK 628
NLL+ A+
Sbjct: 527 NLLSRAE 533
>gi|405119973|gb|AFR94744.1| ATP-dependent RNA helicase DOB1 [Cryptococcus neoformans var.
grubii H99]
Length = 1068
Score = 282 bits (721), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 205/610 (33%), Positives = 309/610 (50%), Gaps = 52/610 (8%)
Query: 40 KPLLSSNSIQFQASYKSPK------SFFPTEHKLTDADEAADEYDDDIDDDDDEEAADEY 93
+P LS++S+ + +S K S P++ D ++ AD+ D ++ D + D
Sbjct: 8 EPPLSASSLTVKQKKRSSKDKSGTPSPRPSKSARLDHEDGADDSMDVLEKGTDGQPRDPM 67
Query: 94 ----DDVSGEVSDEIQ-QSDDEFEVSSDSSPAPSWREEFKWQRVEKLCNEV---KEFG-- 143
D +V DE + Q++ E E + D + + +E K + V ++ ++V ++
Sbjct: 68 EALEDGAMPKVEDEYEVQAEREVEAAKDFADVTAPGQEAKLKLVHQVRHQVAIPPDYPYI 127
Query: 144 --NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN 201
N+ D A Y F +D FQ S R SV+VSA TS+GKT++AE A +
Sbjct: 128 PINQHKRKDPPARTYKFELDPFQFVSTSCIERNESVLVSAHTSAGKTVVAEFAIATCLKE 187
Query: 202 QRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQS 261
RR+ YT+P+KALSNQKFREF ETFGD VGL+TGD IN EA L+MTTEILR+MLY+
Sbjct: 188 GRRVVYTSPIKALSNQKFREFTETFGD--VGLMTGDVTINPEASCLVMTTEILRSMLYRG 245
Query: 262 VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELA 321
++ +V +V DEVHY+ D RG VWEE II P V+ + LSAT+ N+ E A
Sbjct: 246 SEVMR------EVAWVVFDEVHYMRDKERGVVWEETIILLPHSVRYVFLSATIPNSMEFA 299
Query: 322 GWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 380
WI + H + ++ + RP PL Y L P E + L E
Sbjct: 300 EWICRTHEQPCHVVYTDFRPTPLQHY------LFPAGSEG------------IYLVVDEK 341
Query: 381 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 440
++D ++ + + S G+ + K + + + + + R+
Sbjct: 342 SNFRDDNFQKAMAALAQGQGEDPANPSGGKGKKGKTKKGGALKGETSDIYKIVQLIMRRN 401
Query: 441 MLPAIWFIFNRRGC-DAAVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL 498
+ P I F F++R C D A+Q + D N DE + ++ L D + I+G+
Sbjct: 402 LNPVIIFAFSKRECEDLAMQMQKFDFNTPDEA-ATVAQVFESAIGSLSEDDKKLSQIEGI 460
Query: 499 L----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554
L +G+ HH G LPI K IE LFQ GL+K +FATET + G+NMPA+T V +S+ K
Sbjct: 461 LPLLKRGIGIHHGGLLPILKEVIEILFQEGLIKALFATETFSIGLNMPAKTVVFTSVRKF 520
Query: 555 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 614
L+ E QM+GRAGRRG+D RG V+++ E ++ + L S F
Sbjct: 521 DGKDFRNLSGGEYIQMSGRAGRRGLDARGIVIMMCDEKIEPEAAKGMVKGQADRLDSAFH 580
Query: 615 ASYGMVLNLL 624
Y M++NL+
Sbjct: 581 LGYNMIINLM 590
>gi|190348463|gb|EDK40919.2| hypothetical protein PGUG_05017 [Meyerozyma guilliermondii ATCC
6260]
Length = 1060
Score = 282 bits (721), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 173/481 (35%), Positives = 257/481 (53%), Gaps = 40/481 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I R SV+VSA TS+GKT++AE A ++ +R+ YT+P+K
Sbjct: 133 ARTYPFTLDPFQDTAISCIDRNESVLVSAHTSAGKTVVAEYAIAQSLREHQRVIYTSPIK 192
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 193 ALSNQKYRELLAEFGD--VGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEVMR------ 244
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V +V DEVHY+ D SRG VWEE II P +V + LSAT+ NA + A WI IH +
Sbjct: 245 EVAWVVFDEVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMQFAEWIVDIHAQPC 304
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLS-TSEVKPYKDGGS 388
++ + RP PL Y ++ + ++DEKG +S S P D
Sbjct: 305 HVVYTDFRPTPLQHYLFPASGDGIHLVVDEKGTFREENFQKAMASISDNSGDDPASD--- 361
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
TS G+ + +S + +++ ++ R P I F
Sbjct: 362 -----------------TSRGKKGQTYKGGQKDGKSDIYKIVKMIYMKRYN---PVIVFS 401
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVA 503
F++R C++ + + ++ E + L P++ +E P IK +L +G+
Sbjct: 402 FSKRDCESLALKMSKLDFNNDEERDALTQIFNNAISLLPESDKELPQIKNILPLLKRGIG 461
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K G ++
Sbjct: 462 IHHSGLLPILKEIIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKWDGKGFRWVS 521
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL
Sbjct: 522 GGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNL 581
Query: 624 L 624
+
Sbjct: 582 M 582
>gi|298711426|emb|CBJ32567.1| Superkiller viralicidic activity 2-like 2 (ATP-dependent helicase
SKIV2L2) conserved hypothetical pr [Ectocarpus
siliculosus]
Length = 1034
Score = 282 bits (721), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 176/482 (36%), Positives = 261/482 (54%), Gaps = 43/482 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ+ +IE R SV+VSA TS+GKT+ AE A + +++R+ YT+P+K
Sbjct: 106 AKEYPFTLDPFQKQAIEYIERNESVLVSAHTSAGKTVNAEYAIAKCLRDKQRVIYTSPIK 165
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFR+ +E FGD VGL+TGD IN A LIMTTEILR+MLY+ ++
Sbjct: 166 ALSNQKFRDLQEEFGD--VGLMTGDITINPSATCLIMTTEILRSMLYRGSEVMR------ 217
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HY+ D +RG VWEE II P +V+ + LSAT+ N+ E GWI + H +
Sbjct: 218 EVAWVIYDEIHYMRDKNRGVVWEESIILLPHKVRFVFLSATIPNSKEFCGWIAKTHHQPC 277
Query: 332 ELITSSRRPVPLTWYFST--KTALLPLLDEKGK--HMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RPVPL Y L ++D KG+ N + ++ LQ +T E + +G
Sbjct: 278 HVVYTDYRPVPLEHYIFPFGGEGLHLVVDNKGRFRENNFQKAMAKLQ-ATPEEQAVAEGK 336
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+FG + +K ++ + + + + R + PAI F
Sbjct: 337 K------------------TFGAKKQAK------KQGEGSDLYKIVRLVMDRSLDPAIVF 372
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGV 502
F ++ C+ + + D+ E VE D R+ P ++ +L +GV
Sbjct: 373 SFAKKECEGNALQMSKLDFNDDSEKLLVEQVFGNAMESLADEDRQLPQVEAILPLLKRGV 432
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH G LPI K IE LFQ GL+K++FATET + G+NMPART V ++ K +
Sbjct: 433 GIHHGGLLPILKEVIEILFQEGLIKILFATETFSIGLNMPARTVVFTNTRKFDGQDFRWI 492
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
TS E QM+GRAGRRG D+RG V+ + + +L+ + L S + SY M+LN
Sbjct: 493 TSGEYIQMSGRAGRRGKDDRGIVIQMLDEKMDPQVAKGMLYGEADALNSSYHISYNMLLN 552
Query: 623 LL 624
+L
Sbjct: 553 ML 554
>gi|312385895|gb|EFR30287.1| hypothetical protein AND_00228 [Anopheles darlingi]
Length = 1749
Score = 282 bits (721), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 182/517 (35%), Positives = 265/517 (51%), Gaps = 59/517 (11%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W + + V +F + + +A + F +D FQ+ +I S V V+A TS+GK
Sbjct: 722 EWAEILDISKPVDDF---YVKIPVMAHRFPFELDIFQKQAILKLEEHSHVFVAAHTSAGK 778
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A + + + YT+P+KALSNQK+R+F+ TF D VGL+TGD I+ A L
Sbjct: 779 TVVAEYAIALSKKHLTKSIYTSPIKALSNQKYRDFKTTFQD--VGLMTGDIQIDPTASCL 836
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY + D++ ++ DEVHY++D RG VWEE++I P V I
Sbjct: 837 IMTTEILRSMLYCGSDITR------DLEYVIFDEVHYITDSERGHVWEEVLILLPDHVCI 890
Query: 308 ICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFST------KTALLPLLDEK 360
+ LSATV N E A W+G+ K ++++++RPVPL Y T K+ +++E
Sbjct: 891 VMLSATVPNTLEFANWVGKTKKKRVYVVSTAKRPVPLEHYLYTGFGGKSKSDCFLIVNEH 950
Query: 361 GKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA 420
+ + K GG RN ++ + Q Q
Sbjct: 951 SAFTQEGYRKAKECMEVKQAKASGGGGPVMRNQKRTG---------PYSQKQE------- 994
Query: 421 IRRSQVPQVIDTLW-----HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV 475
TLW HL+S+D LP + F +R CD+ L C+L E +
Sbjct: 995 ----------QTLWVGLIHHLKSQDKLPVVAFTLSRNRCDSNADALLSCDLTTAREKYVI 1044
Query: 476 ELALKR--FRILYPDAVREPAIK----GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVV 529
++ R++ PD P ++ L +G+ HH+G LPI K +E LF RGLVK++
Sbjct: 1045 NSFFQQCLHRLIPPDRAL-PQVRQMQSCLERGIGIHHSGILPILKEIVEMLFARGLVKIL 1103
Query: 530 FATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ 589
FATET A G+NMPART + S K L +E QMAGRAGRRG+D G V+++
Sbjct: 1104 FATETFAMGVNMPARTVIFDSTRKFDGQCVRPLQPSEYTQMAGRAGRRGLDKTGTVIIIC 1163
Query: 590 TPYEGAEECCKLLFAGVEP--LVSQFTASYGMVLNLL 624
AE K + G +P L SQF +Y M+L LL
Sbjct: 1164 KNEVPAESELKTMIMG-KPVRLESQFRLTYAMMLYLL 1199
>gi|91092470|ref|XP_970408.1| PREDICTED: similar to helicase [Tribolium castaneum]
Length = 1052
Score = 282 bits (721), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 184/488 (37%), Positives = 260/488 (53%), Gaps = 54/488 (11%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A Y F +D FQ+ SI SV+VSA TS+GKT+IAE A ++ N++R+ YTTP
Sbjct: 129 EPAKTYPFVLDSFQKESILCVDNNQSVLVSAHTSAGKTVIAEYAIALSLKNKQRVIYTTP 188
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+REF + F D VGL+TGD IN A LIMTTEILRNMLY+ ++
Sbjct: 189 IKALSNQKYREFLDEFKD--VGLITGDVTINPSASCLIMTTEILRNMLYRGSEVMR---- 242
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V +V DE+HY+ D RG VWEE +I P V + LSAT+ NA + A W+ +H +
Sbjct: 243 --EVGWVVFDEIHYMRDKERGVVWEETLILLPHNVHFVFLSATIPNARQFAEWVAHLHDQ 300
Query: 331 -TELITSSRRPVPLTW--YFSTKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKD 385
++ + RP PL Y + + + ++DE G K + ++ LQ S K +
Sbjct: 301 PCHVVYTDYRPTPLQHFIYPAGGSGIHMVVDETGTFKDDSYNAAMAVLQNSGDAAKGDEK 360
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
G RR K+ D +I +VI + R+ P I
Sbjct: 361 G---RRGGIKNKDATQTDIF----------------------KVIKMIM---ERNFAPVI 392
Query: 446 WFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL---- 499
F F+++ C+ A+Q + D N E + + E+ +L D P ++ LL
Sbjct: 393 VFSFSKKDCEVFAMQMTKLDFNTTAEKHLVD-EVFNNAMDVLSDDDRHLPQVENLLPLLR 451
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+G+ HH G LPI K IE LF GL+K +FATET A G+NMPART + + + K
Sbjct: 452 RGIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTGMRKFDGHEY 511
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFTAS 616
+TS E QM+GRAGRRG+D++G V+L+ + P K L +P+ S F +
Sbjct: 512 RWITSGEYIQMSGRAGRRGLDDKGIVILMVDEKVPPAAGRNIVKGL---PDPINSAFHLT 568
Query: 617 YGMVLNLL 624
Y MVLNLL
Sbjct: 569 YNMVLNLL 576
>gi|344233814|gb|EGV65684.1| antiviral helicase [Candida tenuis ATCC 10573]
Length = 1063
Score = 282 bits (721), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 170/478 (35%), Positives = 261/478 (54%), Gaps = 39/478 (8%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
Y F++D FQ +SI R SV+VSA TS+GKT++AE A ++ +++R+ YT+P+KALS
Sbjct: 138 YPFKLDPFQDTSISCIDRNESVLVSAHTSAGKTVVAEYAIAQSLRDKQRVIYTSPIKALS 197
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+RE + FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++ +V
Sbjct: 198 NQKYRELQAEFGD--VGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEVMR------EVA 249
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
++ DEVHY+ D SRG VWEE +I P +V + LSAT+ NA E A WI +IH + ++
Sbjct: 250 WVIFDEVHYMRDKSRGVVWEETMILLPDKVHYVFLSATIPNAMEFAEWIVKIHEQPCHVV 309
Query: 335 TSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK-PYKDGGSRRR 391
+ RP PL Y + + ++DEKG Q+S + P G + +
Sbjct: 310 YTDFRPTPLQHYLFPAGGDGIHLVVDEKGTFREENFQKAMAQISDGMGEDPGAVDGKKGK 369
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
+ N++ ++ + +++ ++ R P I F F++
Sbjct: 370 KGQTWKGGNNDG-------------------KTDIYKIVKMIYMKRYN---PVIVFSFSK 407
Query: 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAHH 506
R C+ + + ++ E + L P++ RE P IK +L +G+ HH
Sbjct: 408 RDCETLALKMSRLDFNNDDERDALTKIFNNAIGLLPESDRELPQIKNILPLLRRGIGIHH 467
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566
+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K G ++ E
Sbjct: 468 SGLLPILKEIIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTSVRKWDGVGFRWVSGGE 527
Query: 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 528 YIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMLLNLM 585
>gi|270004784|gb|EFA01232.1| hypothetical protein TcasGA2_TC010559 [Tribolium castaneum]
Length = 1126
Score = 282 bits (721), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 181/487 (37%), Positives = 255/487 (52%), Gaps = 52/487 (10%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A Y F +D FQ+ SI SV+VSA TS+GKT+IAE A ++ N++R+ YTTP
Sbjct: 110 EPAKTYPFVLDSFQKESILCVDNNQSVLVSAHTSAGKTVIAEYAIALSLKNKQRVIYTTP 169
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+REF + F D VGL+TGD IN A LIMTTEILRNMLY+ ++
Sbjct: 170 IKALSNQKYREFLDEFKD--VGLITGDVTINPSASCLIMTTEILRNMLYRGSEVMR---- 223
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V +V DE+HY+ D RG VWEE +I P V + LSAT+ NA + A W+ +H +
Sbjct: 224 --EVGWVVFDEIHYMRDKERGVVWEETLILLPHNVHFVFLSATIPNARQFAEWVAHLHDQ 281
Query: 331 -TELITSSRRPVPLTW--YFSTKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKD 385
++ + RP PL Y + + + ++DE G K + ++ LQ S K +
Sbjct: 282 PCHVVYTDYRPTPLQHFIYPAGGSGIHMVVDETGTFKDDSYNAAMAVLQNSGDAAKGDEK 341
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
G RR K+ D +I +VI + R+ P I
Sbjct: 342 G---RRGGIKNKDATQTDIF----------------------KVIKMIM---ERNFAPVI 373
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----K 500
F F+++ C+ + + E V E+ +L D P ++ LL +
Sbjct: 374 VFSFSKKDCEVFAMQMTKLDFNTTAEKHLVDEVFNNAMDVLSDDDRHLPQVENLLPLLRR 433
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+ HH G LPI K IE LF GL+K +FATET A G+NMPART + + + K
Sbjct: 434 GIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTGMRKFDGHEYR 493
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFTASY 617
+TS E QM+GRAGRRG+D++G V+L+ + P K L +P+ S F +Y
Sbjct: 494 WITSGEYIQMSGRAGRRGLDDKGIVILMVDEKVPPAAGRNIVKGL---PDPINSAFHLTY 550
Query: 618 GMVLNLL 624
MVLNLL
Sbjct: 551 NMVLNLL 557
>gi|213405633|ref|XP_002173588.1| ATP-dependent RNA helicase DOB1 [Schizosaccharomyces japonicus
yFS275]
gi|212001635|gb|EEB07295.1| ATP-dependent RNA helicase DOB1 [Schizosaccharomyces japonicus
yFS275]
Length = 1002
Score = 282 bits (721), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 173/482 (35%), Positives = 257/482 (53%), Gaps = 53/482 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y+F +D FQ +SI R S++VSA TS+GKT++AE A + N R+ YT+P+K
Sbjct: 91 ARSYEFSLDPFQAASIACVERKESIIVSAHTSAGKTVVAEYAIAQALKNGERVVYTSPIK 150
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
+LSNQK+REF FGD VGL+TGD +N A L+MTTEILR+MLY+S +
Sbjct: 151 SLSNQKYREFLAEFGD--VGLMTGDVTLNPNAGCLVMTTEILRSMLYKSSELTR------ 202
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P V+ I LSAT+ NA E A WI +IH +
Sbjct: 203 EVSWVIFDEVHYMRDKDRGVVWEETIILLPDAVRYIFLSATLPNAKEFADWICKIHNQPC 262
Query: 332 ELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ +S RP PL + + A + ++DE GK M Q + S + + SR
Sbjct: 263 HVVYTSYRPTPLQHFLFPRGANGIYMIVDEHGKLME-----GNFQKAMSILNEQDETSSR 317
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
++ + + VP++ + + + D P I F F
Sbjct: 318 KKQKQNKS----------------------------VPELFRLVKMITANDYDPLIIFCF 349
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVR-EPAIKGLL----KGVAA 504
+++ C+A + ++D+ + V+ + R P I +L +G+
Sbjct: 350 SKKECEAGAVSISSLEVIDDKKKELVDQVFNSAMNQLSETDRCIPQITNMLPLLRRGIGI 409
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI + +E LFQ GL+ ++FATET + G+NMPART + + + K + + S
Sbjct: 410 HHSGMLPILREVVEILFQEGLITILFATETFSIGLNMPARTVLFTEMQKFSGESFRWINS 469
Query: 565 NELFQMAGRAGRRGIDNRG-HVVLVQTPYEGAEECCKLLFAGVE-PLVSQFTASYGMVLN 622
+E QM+GRAGRRG+D RG +V+ ++ A K +F G L S F SY M+LN
Sbjct: 470 SEYTQMSGRAGRRGLDERGLSIVMANKNFDLA--TAKAIFTGPPAALNSAFRISYNMILN 527
Query: 623 LL 624
LL
Sbjct: 528 LL 529
>gi|226467528|emb|CAX69640.1| putative RIKEN cDNA 2610528A15 [Schistosoma japonicum]
Length = 615
Score = 282 bits (721), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 173/485 (35%), Positives = 254/485 (52%), Gaps = 47/485 (9%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
D A + F +D FQ+ +I SV++SA TS+GKT++AE A + ++R+ Y
Sbjct: 109 DCGSPARTFPFTLDAFQQQAIICIDNNQSVLLSAHTSAGKTVVAEYAIATALREKQRVIY 168
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
TTP+KALSNQK+REF E F + VGLLTGD+ IN A +LIMTTEIL++MLY+ MV
Sbjct: 169 TTPIKALSNQKYREFFEAFPE--VGLLTGDATINPSASVLIMTTEILQSMLYKGASMVR- 225
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
+V ++ DE+HY+ D RG VWEE I+ P V+ + LSAT+ NA + A WI +
Sbjct: 226 -----EVGWVIFDEIHYMRDPERGVVWEETIVLLPDSVRYVFLSATIPNARQFAEWISHL 280
Query: 328 HGK-TELITSSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 384
H + +++S RPVPL Y L +LDE GK++ + ++ +
Sbjct: 281 HHQPCHVVSSDCRPVPLRHYLYPLGSEGLFLVLDE-GKYLEQNFE--------RAMRSFL 331
Query: 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444
S R + D N S+N++ I R ++ R + P
Sbjct: 332 SDESSNRRQKSQVDYNKR-----------SENNVIQIVRL-----------VKHRSLEPI 369
Query: 445 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL---- 499
I F F+++ C+ L + + E V+ + L P+ P ++ +L
Sbjct: 370 IVFSFSKKECEIYALQLAKFDFTTDAEKKVVDEVFRNAIDGLSPEDRSLPQVESVLPLLK 429
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+G+ HH G LP+ K IE LF L+K +FATET A G+NMPART + +S K
Sbjct: 430 RGIGIHHGGLLPLLKETIEILFSENLIKCLFATETFAMGLNMPARTVLFTSARKYDGHSY 489
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
+TS E QM+GRAGRRG D+ G V+L+ +E +++ PL S F +Y M
Sbjct: 490 RWITSGEYIQMSGRAGRRGKDDSGTVILMVDESMTSELAHQIMMGPPPPLNSAFHITYNM 549
Query: 620 VLNLL 624
+LNLL
Sbjct: 550 LLNLL 554
>gi|389644602|ref|XP_003719933.1| FRQ-interacting RNA helicase [Magnaporthe oryzae 70-15]
gi|351639702|gb|EHA47566.1| FRQ-interacting RNA helicase [Magnaporthe oryzae 70-15]
gi|440473029|gb|ELQ41852.1| ATP-dependent RNA helicase DOB1 [Magnaporthe oryzae Y34]
gi|440484809|gb|ELQ64829.1| ATP-dependent RNA helicase DOB1 [Magnaporthe oryzae P131]
Length = 1102
Score = 282 bits (721), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 182/483 (37%), Positives = 259/483 (53%), Gaps = 38/483 (7%)
Query: 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209
+E A Y F++D FQ S+ + R SV+VSA TS+GKT++AE A + +R+ YT+
Sbjct: 167 EEPARKYAFKLDPFQSISVASIERDESVLVSAHTSAGKTVVAEYAIAHCLKRNQRVIYTS 226
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSES 269
P+KALSNQKFR+F+ FGD VGL+TGD IN A L+MTTEILR+MLY+ ++ E
Sbjct: 227 PIKALSNQKFRDFQAEFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRG-SEITREV 283
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
G +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH
Sbjct: 284 GW-----VVFDEIHYMRDATRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHR 338
Query: 330 KT-ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
+ ++ + RP PL Y + + ++DEKG +K +++ S D
Sbjct: 339 QACHVVYTDFRPTPLQNYVFPAGGDGIYIMVDEKGVFREKK----FMEAIGSIAGKNDDD 394
Query: 387 GSRRRNSRKHADMNS-NNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
S R K + + N V SK I I + ++ +H P I
Sbjct: 395 DSMPRQKGKGKNKKAVKNTVPD------SKADITKI----IKMIMRRAYH-------PVI 437
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI-LYPDAVREPAIKGLL----K 500
F F++R C+ + N E E VE + + L + P I+ LL K
Sbjct: 438 VFNFSKRECENLALKVSTLNFNHESEQKLVEDIFRNAIMSLSEEDQGLPQIQHLLPLLKK 497
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+ HH+G LPI K IE LFQ L+KV+FATET + G+NMPA+T V S + K
Sbjct: 498 GIGVHHSGLLPILKETIEILFQENLIKVLFATETFSIGLNMPAKTVVFSQVKKFDGVKER 557
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
LT +E QM+GRAGRRG+D+RG V+++ E ++ + L S F Y M+
Sbjct: 558 PLTPSEYIQMSGRAGRRGLDDRGIVIMMIDDKLDPETAKGMVCGQQDRLNSAFHLGYNMI 617
Query: 621 LNL 623
LNL
Sbjct: 618 LNL 620
>gi|330794782|ref|XP_003285456.1| hypothetical protein DICPUDRAFT_53548 [Dictyostelium purpureum]
gi|325084631|gb|EGC38055.1| hypothetical protein DICPUDRAFT_53548 [Dictyostelium purpureum]
Length = 1118
Score = 282 bits (721), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 180/484 (37%), Positives = 261/484 (53%), Gaps = 56/484 (11%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F++D FQ +S+ R SV+VSA TS+GKT++AE A + +R YT+P+K
Sbjct: 207 ARQYPFKLDPFQATSVACIERNESVLVSAHTSAGKTVVAEYAIATALRGGQRCIYTSPIK 266
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+R+ +ETF N+VGL+TGD IN A L+MTTEILR+MLY+ SE+ +
Sbjct: 267 ALSNQKYRDLQETF--NDVGLMTGDITINPNASCLVMTTEILRSMLYR-----GSET-MR 318
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HYL D RG VWEE II P ++ + LSAT+ NA E A WI +IH +
Sbjct: 319 EVSWVIFDEIHYLRDKERGVVWEETIILLPDSIKFVFLSATIPNAREFAAWIAKIHKQPC 378
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP+PL Y S L ++DE G + N SL+ LQ + + GG
Sbjct: 379 HVVYTEYRPIPLQHYIFPSGGDGLHLVVDENGVFREENFLKSLSNLQQTEDTGR----GG 434
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+R +R +D +++ K + R+ P I F
Sbjct: 435 RGKRQNRGPSDC-----------YKIVK-------------------MIMERNYQPVIVF 464
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGV 502
F+++ C+ + + +E E + VE L + + PA+ +L +G+
Sbjct: 465 SFSKKECELYALQMSKLDFNNEEEKNAVETIFNNAIDSLSEEDKKLPAVINILPLLKRGI 524
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HHAG LPI K IE LFQ G +K +FATET + G+NMPA+T + +S+ K G +
Sbjct: 525 GIHHAGLLPILKEIIEILFQYGYIKALFATETFSIGLNMPAKTVIFTSVRKFDGEGTRWV 584
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVL-VQTPYEGAEECCKLLFAG-VEPLVSQFTASYGMV 620
T E QM+GRAGRRG+D RG V+L V E A K + G + L S F Y M+
Sbjct: 585 TGGEYIQMSGRAGRRGLDERGIVILMVDEKMEPA--VAKGMVKGQADRLTSSFWIGYSML 642
Query: 621 LNLL 624
LN++
Sbjct: 643 LNMI 646
>gi|255573838|ref|XP_002527838.1| helicase, putative [Ricinus communis]
gi|223532762|gb|EEF34541.1| helicase, putative [Ricinus communis]
Length = 991
Score = 282 bits (721), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 170/478 (35%), Positives = 250/478 (52%), Gaps = 40/478 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F +D FQ +I+ G SV+VSA TS+GKT++A A ++ NQ+R+ YT+P+K
Sbjct: 64 AKEFPFTLDPFQSEAIKCLNNGESVMVSAHTSAGKTVVALYAIAMSLRNQQRVIYTSPIK 123
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF+E F D VGL+TGD I A L+MTTEI R+M Y+ +
Sbjct: 124 ALSNQKYREFKEEFSD--VGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEITR------ 175
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H +
Sbjct: 176 EVAWVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPC 235
Query: 332 ELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y A L ++DEKGK + Q + + + P +G +
Sbjct: 236 HIVYTDYRPTPLQHYIFPAGADGLYLVVDEKGKFRE-----DSFQKAVNALVPKSEGEKK 290
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R N + + ++ G+ + + + R P I F F
Sbjct: 291 RENGKWQKGL----VMGKLGEES---------------DIFKMVKMIIERQYDPVILFSF 331
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL----KGVAA 504
++R C+ + +L ++ E +E +L D + P + +L +G+
Sbjct: 332 SKRECEFLAMQMAKMDLNEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGV 391
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ GL+K +FATET + G+NMPA+T V S++ K L+S
Sbjct: 392 HHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFSNVRKFDGDKFRWLSS 451
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
E QM+GRAGRRGID RG +L+ +L + L S F SY M+LN
Sbjct: 452 GEYIQMSGRAGRRGIDERGICILMVDEKLEPSTAKMMLKGSADSLNSAFHLSYNMLLN 509
>gi|297837559|ref|XP_002886661.1| hypothetical protein ARALYDRAFT_893587 [Arabidopsis lyrata subsp.
lyrata]
gi|297332502|gb|EFH62920.1| hypothetical protein ARALYDRAFT_893587 [Arabidopsis lyrata subsp.
lyrata]
Length = 988
Score = 282 bits (721), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 170/480 (35%), Positives = 255/480 (53%), Gaps = 40/480 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F +D FQ +I+ G SV+VSA TS+GKT++A A ++ +R+ YT+P+K
Sbjct: 61 AKNFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSLKENQRVIYTSPIK 120
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+R+F+E F D VGL+TGD I+ A L+MTTEILR+M Y+ ++
Sbjct: 121 ALSNQKYRDFKEEFSD--VGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEIMR------ 172
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V I+ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H +
Sbjct: 173 EVAWIIFDEVHYMRDSERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPC 232
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y + L ++DEK K + Q S + + P +G +
Sbjct: 233 HIVYTDYRPTPLQHYVFPAGGNGLYLVVDEKAKFHE-----DSFQKSLNALVPTNEGDKK 287
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R N + + ++ G+ S + +++ + R P I F F
Sbjct: 288 RDNGKSQKGL----VMGKLGEE------------SDIFKLVKMIIQ---RQYDPVILFSF 328
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAIKGLL----KGVAA 504
+++ C+A + +L + E VE + +L D + P + +L +G+
Sbjct: 329 SKKECEALAMQMSKMDLNSDDEKDAVETIFTSAIDMLSDDDKKLPQVSNILPILKRGIGV 388
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K L+S
Sbjct: 389 HHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSS 448
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRGID RG +L+ +L + L S F SY M+LN L
Sbjct: 449 GEYIQMSGRAGRRGIDKRGICILMVDEKMEPAVAKSMLKGSADSLNSAFHLSYNMLLNQL 508
>gi|70952427|ref|XP_745382.1| helicase [Plasmodium chabaudi chabaudi]
gi|56525688|emb|CAH74731.1| helicase with Zn-finger motif, putative [Plasmodium chabaudi
chabaudi]
Length = 889
Score = 281 bits (720), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 171/515 (33%), Positives = 270/515 (52%), Gaps = 52/515 (10%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
YDF +D FQ+ +++ V ++A TS+GKTLIAE A ++ ++ YT+P+KALS
Sbjct: 292 YDFELDNFQKRAVKHINNFKHVFIAAHTSAGKTLIAEHAIALSIKLNKKAIYTSPIKALS 351
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+ EF+ F NVG++TGD +N A IMTTEILRN+LY + +++ ++
Sbjct: 352 NQKYYEFKNIFK--NVGIITGDVKMNVNAN-CIMTTEILRNLLYLNDNIIN------NIH 402
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL-I 334
++ DEVHY++D RG +WEE II P VQI+ LSATV N + A W+G K + I
Sbjct: 403 CVIFDEVHYVNDEFRGVIWEESIIMLPPHVQIVLLSATVPNYLQFADWVGFTKQKEVIAI 462
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLST----------------- 377
++ +RP+PL Y +L ++DEK K + Y+++
Sbjct: 463 STKKRPIPLLHYIYAHDSLFLIMDEKNKFYSSAFKEIYIKIREKEEAGKKGKELSGSSHG 522
Query: 378 -------SEVKPYKDGGSRRRN---SRKHADMNSNNIVTSFGQH-------QLSKNSINA 420
S+ K KD ++N + + N+ V + Q+ ++ +N N
Sbjct: 523 GKKKIYYSDAKNNKDNQMEKQNKTGTTNNTGDKQNDTVKGYYQYCKQKQKQRMFQNEANM 582
Query: 421 IRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALK 480
++++ ++ + L + LP + F F+R C+ + + N LD + S+V L +K
Sbjct: 583 --KTEIQKLQALIKKLDEDNKLPVVLFCFSRIKCETYAKSMPHLNFLDNKKKSKVHLFIK 640
Query: 481 RFRILYPDAVRE-PAIKGLLK----GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETL 535
D R+ IK L K G+ HH+G LPI K +E LF +GL+KV+FATET
Sbjct: 641 ESASKLCDQDRDLNQIKILSKLLENGIGVHHSGLLPILKEIVEILFSKGLIKVLFATETF 700
Query: 536 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEG 594
A GINMPA++ + +S+ K + LTS+E QM+GRAGRR D G+V +
Sbjct: 701 AMGINMPAKSVIFTSIYKHDHLKKRILTSSEYTQMSGRAGRRSSDTHGYVYIYCSDNIPD 760
Query: 595 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKV 629
+ +++ L S+F +Y M+L LL ++
Sbjct: 761 QVQLTEMMMQKAVSLKSKFKVTYNMILKLLINKQI 795
>gi|347842134|emb|CCD56706.1| similar to ATP-dependent RNA helicase DOB1 [Botryotinia fuckeliana]
Length = 951
Score = 281 bits (720), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 182/485 (37%), Positives = 261/485 (53%), Gaps = 41/485 (8%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A + F +D FQ+ +I + R SV+VSA TS+GKT+ AE A + N +R+ YT+P
Sbjct: 153 EPARTWPFELDPFQKVAIASIQRNESVLVSAHTSAGKTVTAEYAIAQCLKNNQRVIYTSP 212
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+REF FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 213 IKALSNQKYREFTADFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR---- 266
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V +V DE+HY+ D SRG VWEE II P +V+ + LSAT+ NA + A WI + H +
Sbjct: 267 --EVAWVVFDEIHYMRDKSRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKTHNQ 324
Query: 331 T-ELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL YF A + ++DEKG S ++T E K D
Sbjct: 325 PCHIVYTDFRPTPLQHYFFPAGADGIHLIVDEKGNFREDNFSK---AMATIEDKKGSDP- 380
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
AD+N+ G+ + K + A + I + L+ + P I F
Sbjct: 381 ---------ADINAKQK----GRGKDKKTNKGANKEGSDIYKIVRMIMLKHYN--PVIVF 425
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE----PAIKGLL---- 499
F++R C+A + D+ SE ++ K F E P I+ +L
Sbjct: 426 SFSKRECEAYALQMSSMAFNDQ---SEKDMVSKVFESAIESLSEEDRTLPQIQHILPLLR 482
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+G+ HH+G LPI K IE LFQ L+KV+FATET + G+NMPA+T V +S+ K
Sbjct: 483 RGIGVHHSGLLPILKETIEILFQENLIKVLFATETFSIGLNMPAKTVVFTSVEKFDGEKM 542
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
LT +E QM+GRAGRRG+D+RG V+++ E ++ + L S F Y M
Sbjct: 543 RYLTPSEFVQMSGRAGRRGLDDRGIVIMMINDKMEPESAKTIVRGEQDKLNSAFYLGYNM 602
Query: 620 VLNLL 624
+LNL+
Sbjct: 603 ILNLM 607
>gi|402468581|gb|EJW03718.1| hypothetical protein EDEG_01987 [Edhazardia aedis USNM 41457]
Length = 970
Score = 281 bits (720), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 178/531 (33%), Positives = 272/531 (51%), Gaps = 73/531 (13%)
Query: 106 QSDDEFEVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQR 165
SDD F ++ +++ + ++ K+++++ V++ N I E Y F +D FQ+
Sbjct: 30 NSDDHFTLN-NTTHISFYPKDVKYEKLD-----VEKMYNGTIFKKE----YPFELDTFQK 79
Query: 166 SSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFR-- 223
S+ A R ++++SA TS+GKT++AE A N +R YT+P+KALSNQKFRE
Sbjct: 80 LSVAAIDRNENLLISAHTSAGKTVVAEYAIAHCALNNQRCIYTSPIKALSNQKFRELSIY 139
Query: 224 ----ETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVL 279
T +VGL+TGD IN A IL+MTTEILRNMLY+ M+ +V+ ++
Sbjct: 140 ASSFPTVISPSVGLMTGDVTINPNASILVMTTEILRNMLYKGNTMLK------EVNYVIF 193
Query: 280 DEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSR 338
DE+HYL D RG VWEE II P + + LSAT+ NADE A W+ I +I + +
Sbjct: 194 DEIHYLKDAERGVVWEEAIILSPSHFRFVFLSATIPNADEFAKWVVSISKVCCHVIGTDK 253
Query: 339 RPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHAD 398
RP PL + T ++ EK + ++K+ L+ + K+ +R
Sbjct: 254 RPTPLEHFLWNSTKMVS--PEKTTYFDKKVFLSAI----------KNVSNR--------- 292
Query: 399 MNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV 458
+R++ V + + H+ S+ +LP I F F+R+ C+
Sbjct: 293 -----------------------KRTEENDVKNLIMHVSSQGLLPCIVFSFSRKECERYA 329
Query: 459 QYLEDCNLLDECEMSEVELALKRFRILYPDAVR-----EPAIKGLLKGVAAHHAGCLPIW 513
L+D D+ + ++ L D + + + L +GV HHAG LPI
Sbjct: 330 LTLQD-GFTDDNQKEKITLIFNAAIANLRDEEKNLDLIQSILPMLQRGVGIHHAGLLPII 388
Query: 514 KSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGR 573
K +E LFQ L+ V+FATET A G+NMPA+ V +SL K + ++S E QM+GR
Sbjct: 389 KEIVEILFQENLLFVLFATETFAIGLNMPAKCVVFTSLKKFDGESKRLVSSGEYIQMSGR 448
Query: 574 AGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
AGRR +D +G V + Y ++ KL + L S F SY M+LNL+
Sbjct: 449 AGRRNLDTKGIVFSLMNEYITLKKAVKLFSGQADKLSSAFKLSYNMILNLM 499
>gi|403216027|emb|CCK70525.1| hypothetical protein KNAG_0E02660 [Kazachstania naganishii CBS
8797]
Length = 1054
Score = 281 bits (720), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 172/480 (35%), Positives = 253/480 (52%), Gaps = 36/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I RG SV+VSA TS+GKT++AE A ++ ++R+ YT+P+K
Sbjct: 124 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLREKQRVIYTSPIK 183
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 184 ALSNQKYRELLADFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 235
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH +
Sbjct: 236 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 295
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ ++ RP PL Y S + ++DEK +S E
Sbjct: 296 HIVYTNFRPTPLQHYLFPSHGDGIYLVVDEKSTFREENFQKAMASISNQE---------- 345
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
D NS N GQ + + + +++ +W + P I F F
Sbjct: 346 ------GDDPNSVNARGKKGQ-TFKGGAAKGDSKGDIYKIVKMIWKKKYN---PVIVFSF 395
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + + E + L P+ RE P IK +L +G+
Sbjct: 396 SKRDCEELALKMSKLDFNSDDEKDALTKIFTNAIALLPETDRELPQIKHILPLLRRGIGI 455
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 456 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKQFRWVSG 515
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 516 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 575
>gi|444321068|ref|XP_004181190.1| hypothetical protein TBLA_0F01280 [Tetrapisispora blattae CBS 6284]
gi|387514234|emb|CCH61671.1| hypothetical protein TBLA_0F01280 [Tetrapisispora blattae CBS 6284]
Length = 1071
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 253/480 (52%), Gaps = 36/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I RG SV+VSA TS+GKT++AE A ++ ++R+ YT+P+K
Sbjct: 141 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLREKQRVIYTSPIK 200
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 201 ALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 252
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH +
Sbjct: 253 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHFQPC 312
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y + + ++DEK +S
Sbjct: 313 HIVYTDFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS------------- 359
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
++ D NS N GQ S R + +++ +W + P I F F
Sbjct: 360 ---NQSGDDPNSVNSRGKKGQ-TFKGGSSKGDARGDIYKIVKMIWKKKYN---PVIVFSF 412
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + E E + L P+ RE P IK +L +G+
Sbjct: 413 SKRDCEELALKMSKLDFNSEEEKDTLSKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 472
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 473 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 532
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 533 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 592
>gi|406601717|emb|CCH46678.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 1066
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 261/480 (54%), Gaps = 37/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I R SV+VSA TS+GKT++AE A ++ ++R+ YT+P+K
Sbjct: 138 ARTYPFTLDPFQDTAISCIDRSESVLVSAHTSAGKTVVAEYAIAQSLGEKQRVIYTSPIK 197
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 198 ALSNQKYRELLAEFGD--VGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEVMR------ 249
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P +V + LSAT+ NA E A WI +IH +
Sbjct: 250 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWICKIHSQPC 309
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y + + ++DEK R+ + S S+
Sbjct: 310 HVVYTDFRPTPLQHYLFPANGDGIHLVVDEKSTF--REENFQKAMASISD---------- 357
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
K D + + + S G+ + N +S + +++ +W + P I F F
Sbjct: 358 -----KQGD-DPSAVDKSKGKKGQTFKGGNKDGKSDIYKIVKMIW---IKKYNPVIVFSF 408
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C++ + + E E + + P++ RE P IK +L +G+
Sbjct: 409 SKRDCESLALKMSKLDFNTEEERDTLTKIFNNAVDVLPESDRELPQIKHILPLLRRGIGI 468
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K G ++
Sbjct: 469 HHSGLLPILKEIIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKGFRWVSG 528
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 529 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGEADRLDSAFHLGYNMILNLM 588
>gi|328768590|gb|EGF78636.1| hypothetical protein BATDEDRAFT_20298 [Batrachochytrium
dendrobatidis JAM81]
Length = 1115
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 180/488 (36%), Positives = 266/488 (54%), Gaps = 53/488 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F++D FQ +SI + RG SV+VSA TS+GKT++AE A ++ ++R+ YT+P+K
Sbjct: 176 ARTYPFKLDPFQATSITSIERGESVLVSAHTSAGKTVVAEYAIAKSLLQKQRVIYTSPIK 235
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE + FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 236 ALSNQKYRELLQEFGD--VGLMTGDVTINPGASCLVMTTEILRSMLYRGSEVMR------ 287
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HY+ D +RG VWEE +I P +V+ + LSAT+ NA + A WI +IH +
Sbjct: 288 EVAWVIFDEIHYMRDKARGVVWEETLIMLPDKVRFVFLSATIPNAMQFAEWICKIHKQPC 347
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYL-----QLSTSEVKP 382
++ + RP PL Y S + +DEK + N + +++ L +T
Sbjct: 348 HVVYTDYRPTPLQHYLFPSGGEGIYLAVDEKSVFRQANFQKAISALGDDATDPTTGASIK 407
Query: 383 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
G SR+R+ ++ G L K L + ++
Sbjct: 408 KSTGSSRKRDG------------STKGPSDLFK----------------ILRMIMVKNYH 439
Query: 443 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL-- 499
P I F F++R C+A L + D+ E V+ + L D P I+ +L
Sbjct: 440 PVIVFSFSKRECEANALQLSKLDFNDDDEKQLVKSVFENAITSLSEDDRGLPQIEHILPL 499
Query: 500 --KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
+G+ HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +++ K
Sbjct: 500 LKRGIGIHHSGLLPILKEVIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTAVRKFDGK 559
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV-EPLVSQFTAS 616
L+ E QM+GRAGRRG+D+RG VV++ + K + GV +PL S F +
Sbjct: 560 ETRWLSGGEYIQMSGRAGRRGLDDRG-VVILMIDEKMEPNVAKDMLKGVSDPLNSAFHLT 618
Query: 617 YGMVLNLL 624
Y M+LNLL
Sbjct: 619 YTMILNLL 626
>gi|326509011|dbj|BAJ86898.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 995
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 179/517 (34%), Positives = 264/517 (51%), Gaps = 53/517 (10%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F +D FQ +I G SV+VSA TS+GKT++A A ++ NQ+R+ YT+P+KALS
Sbjct: 74 FPFPLDPFQSEAIRCLDNGESVMVSAHTSAGKTVVALYAIAMSLRNQQRVIYTSPIKALS 133
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+REF+E F D VGL+TGD I A L+MTTEI R+M Y+ ++ +V
Sbjct: 134 NQKYREFKEEFSD--VGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEVMR------EVA 185
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
++ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H + ++
Sbjct: 186 WVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQPCHIV 245
Query: 335 TSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
+ RP PL Y + L ++DE GK + Q S + + P +R N
Sbjct: 246 YTDYRPTPLQHYVFPAGGDGLYLVVDENGKFRE-----DSFQKSLNVLAPASGNDKKREN 300
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
++ K ++A + ++ + + + R P I F F++R
Sbjct: 301 GKRQ------------------KGVVSAGKTNEESDIFKMVKMIIQRQYDPVILFSFSKR 342
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL----KGVAAHHA 507
C+ + +L + E +E +L D + P + +L +G+ HH+
Sbjct: 343 ECEFLAMQMAKMDLNGDDEKVNIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHS 402
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
G LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K L+S E
Sbjct: 403 GLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEY 462
Query: 568 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 627
QM+GRAGRRGID RG +L+ +L G + L S F SY M+LN L
Sbjct: 463 IQMSGRAGRRGIDQRGVCILMVDEKMEPSTAKMMLKGGADSLNSAFHLSYNMLLNQLR-- 520
Query: 628 KVMHLSNESDDMKAL-------QAGRSLEEARKLVEQ 657
S + D K L QA R+L + K V +
Sbjct: 521 -----SEDGDPEKLLRHSFYQFQADRALPDLEKQVRE 552
>gi|156059878|ref|XP_001595862.1| hypothetical protein SS1G_03952 [Sclerotinia sclerotiorum 1980]
gi|154701738|gb|EDO01477.1| hypothetical protein SS1G_03952 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1082
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 181/485 (37%), Positives = 261/485 (53%), Gaps = 41/485 (8%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A + F +D FQ+ +I + R SV+VSA TS+GKT+ AE A + N +R+ YT+P
Sbjct: 151 EPARTWPFELDPFQKVAIASIQRNESVLVSAHTSAGKTVTAEYAIAQCLKNNQRVIYTSP 210
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+REF FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 211 IKALSNQKYREFTADFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR---- 264
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI + H +
Sbjct: 265 --EVAWVVFDEIHYMRDKARGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKTHNQ 322
Query: 331 -TELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL YF A + ++DEKG S ++T E K D
Sbjct: 323 PCHIVYTDFRPTPLQHYFFPAGADGIHLIVDEKGNFREDNFSK---AMATIEEKKGSDP- 378
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
AD+N+ G+ + K + A + I + L+ + P I F
Sbjct: 379 ---------ADINAKQK----GRGKDKKTNKGANKEGSDIYKIVRMIMLKHYN--PVIVF 423
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE----PAIKGLL---- 499
F++R C+A + D+ SE ++ K F E P I+ +L
Sbjct: 424 SFSKRECEAYALQMSSMAFNDQ---SEKDMVSKVFESAIESLSEEDRTLPQIQHILPLLR 480
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+G+ HH+G LPI K IE LFQ L+KV+FATET + G+NMPA+T V +S+ K
Sbjct: 481 RGIGVHHSGLLPILKETIEILFQENLIKVLFATETFSIGLNMPAKTVVFTSVEKFDGEKM 540
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
LT +E QM+GRAGRRG+D+RG V+++ E ++ + L S F Y M
Sbjct: 541 RYLTPSEFVQMSGRAGRRGLDDRGIVIMMINDKMEPESAKTIVRGEQDKLNSAFYLGYNM 600
Query: 620 VLNLL 624
+LNL+
Sbjct: 601 ILNLM 605
>gi|429850926|gb|ELA26154.1| ATP-dependent RNA helicase dob1 [Colletotrichum gloeosporioides
Nara gc5]
Length = 1083
Score = 281 bits (719), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 192/578 (33%), Positives = 301/578 (52%), Gaps = 71/578 (12%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A Y+F++D FQ S+ + R SV+VSA TS+GKT++AE A + +R+ YT+P
Sbjct: 134 EPARKYNFKLDPFQALSVASIEREESVLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTSP 193
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+R+F FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 194 IKALSNQKYRDFEALFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR---- 247
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH +
Sbjct: 248 --EVAWVVFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHHQ 305
Query: 331 T-ELITSSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKD 385
++ + RP PL YF S + ++DEKG + N + ++ ++ + +
Sbjct: 306 ACHVVYTDFRPTPLQNYFFPSGGNGIFLVVDEKGVFREGNFQKTMALVEQGKGQDPSNAN 365
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
+ + ++K+ GQ K+ I+ I R ++ +H P I
Sbjct: 366 ANWKGKGAKKNTQKG--------GQAADMKSDISKIVR----MIMQKSFH-------PVI 406
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----K 500
F F+++ + + ++ E + V+ +A RE P I+ LL K
Sbjct: 407 IFNFSKKEVENLALNISHFQFNNDSEQAMVKTVFNNAIQSLSEADRELPQIQNLLPLLQK 466
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+ HH+G LPI K IE LFQ L+KV+ ATET + G+NMPA+T V + ++K R
Sbjct: 467 GIGVHHSGLLPILKETIEILFQESLIKVLVATETFSIGLNMPAKTVVFTQVTKWDGVKRR 526
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
LT +E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+
Sbjct: 527 PLTPSEYIQMSGRAGRRGLDSRGIVIMMIDDKMEPDTARAIVVGEQDRLNSAFYLGYNMI 586
Query: 621 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 680
LNLL ++ +S E ++E+ F + + A + +L +Q+
Sbjct: 587 LNLL---RIEAISPEF-----------------MLERCFHQFQTGASVPALERDLMALQQ 626
Query: 681 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELK 718
E D ++ I+D EA KE NL+ +L+
Sbjct: 627 ERDAMS--IAD------------EATVKEYYNLRNQLE 650
>gi|423074707|ref|ZP_17063432.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DP7]
gi|361854396|gb|EHL06467.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DP7]
Length = 762
Score = 281 bits (719), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 182/490 (37%), Positives = 265/490 (54%), Gaps = 64/490 (13%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
NE+I V E + + +D+FQ +++A G SV+V+APT +GKTL+A+ ++ R
Sbjct: 8 NELIFVSE-RTYHGLVLDRFQEEALDAIDEGQSVIVAAPTGTGKTLVADYLVEKVMSEGR 66
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
RI YT P+KALSNQKF+++++ FG + VG+LTGD +N EA +LIMTTEI RN
Sbjct: 67 RIIYTAPIKALSNQKFKDYKQLFGVDQVGILTGDVVLNSEAPLLIMTTEIFRNQ------ 120
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+++ + L V I+ DE+H+L+D RGTVWEE II P ++++ LSATVANA +L W
Sbjct: 121 VITGDPALESVSYIIFDEIHWLNDEERGTVWEESIILAPPHMKLLGLSATVANARQLVDW 180
Query: 324 IGQI-HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 382
IG I + LI + R VPL +Y+ K L +NY +L
Sbjct: 181 IGSIRQEEVALIQENHRIVPLEYYYFAKDTGL---------------VNYEKL------- 218
Query: 383 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
+K R +++ Q ++ SI A P L + + L
Sbjct: 219 WKYYRQRIQSA------------------QPTEGSIFA------PTHHLDLIKVIQKHYL 254
Query: 443 PAIWFIFNRRGC-DAAVQYLEDCNLLDECEMSEVELA-LKRFRILYPDAVREPAIKGL-- 498
PA++F+F+R+ C D A + N L E +VE A L+ F P++ P+ + L
Sbjct: 255 PALYFVFSRKQCADKASELALIANYLKPQEKRQVEDAFLEHFG---PESDWYPSTRLLRR 311
Query: 499 --LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
+KG+A HHAG +P K +EELF + L+ V++ TET + GIN P R+ +L+K
Sbjct: 312 LAVKGIAFHHAGLMPSQKVLVEELFLKRLIHVLYCTETFSVGINYPVRSVCFDTLNKFDG 371
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 615
L ++E FQM+GRAGRRG+D RG+ LV Y + +EPL SQF
Sbjct: 372 RNFRPLANHEFFQMSGRAGRRGLDERGYSFALVDLNYMEKNPPPRFNINRLEPLTSQFKL 431
Query: 616 SYGMVLNLLA 625
SY VLNL A
Sbjct: 432 SYNTVLNLQA 441
Score = 41.6 bits (96), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 1099 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP---KLPDVDQRLQ 1154
D + + +V +W+ G+++ E+ LD+GD+ ++RRTIDLL Q+ K P + QRL+
Sbjct: 688 DPRVAVIVYSWSQGVSFAEVQRLSNLDEGDIISVIRRTIDLLRQMRDAVKEPALLQRLK 746
>gi|348667405|gb|EGZ07230.1| hypothetical protein PHYSODRAFT_528925 [Phytophthora sojae]
Length = 1056
Score = 281 bits (719), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 172/480 (35%), Positives = 250/480 (52%), Gaps = 34/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ+ +++ G SV+VSA TS+GKT +AE A ++ +++R+ YT+P+K
Sbjct: 127 AKTYPFTLDPFQQQAVDYIEAGESVLVSAHTSAGKTAVAEYAIAKSLRDKQRVIYTSPIK 186
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+R+ E FGD VGL+TGD IN A LIMTTEILR+MLY+ ++
Sbjct: 187 ALSNQKYRDLEEEFGD--VGLMTGDITINPSATCLIMTTEILRSMLYRGSEIMR------ 238
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HY+ D RG VWEE II P +V+ + LSAT+ N+ E AGWI IH +
Sbjct: 239 EVAWVIYDEIHYMRDKERGVVWEESIILLPHKVRFVFLSATIPNSKEFAGWICHIHHQPC 298
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y + L ++DEKGK LS S + S
Sbjct: 299 HVVYTDYRPTPLQHYIFPAGGNGLHLVVDEKGKFREDNFQKAIATLSASVDDAAAELASY 358
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
N+++ SN K + V + + R P I F F
Sbjct: 359 GSNTKRRKAQKSN-----------PKKKVGT-------DVFRIVKLIMERQYDPVIIFSF 400
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C++ + + E E V+ K D R P + +L +G+
Sbjct: 401 SKRECESYALLMSKLDFNTEEEKQSVDQLFKNAMDSLSDDDRALPQVDSILPLLRRGIGI 460
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH G LPI K IE LF GL+K +FATET + G+NMPA+T V ++ K +T+
Sbjct: 461 HHGGLLPILKEVIEILFGEGLLKCLFATETFSMGLNMPAKTVVFTNCRKYDGKDFRWITA 520
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRR +D RG V+ + + + +L+ +PL S F Y M+LNL+
Sbjct: 521 GEYIQMSGRAGRRSLDARGIVIQMLSEQMEPQVAKGILYGQADPLFSTFHLGYNMLLNLM 580
>gi|405972024|gb|EKC36821.1| Helicase SKI2W [Crassostrea gigas]
Length = 1367
Score = 281 bits (719), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 207/590 (35%), Positives = 290/590 (49%), Gaps = 80/590 (13%)
Query: 56 SPKSFFPTEHKLTDADEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQ---------- 105
+PK PT L D AAD + ++ DD+DE + D G + E++
Sbjct: 192 APKQKEPTLLNLADLMSAADLDEFNLGDDEDEGESKNEDHDQGHILSEVKLEKSESLENL 251
Query: 106 -QSDDEFEVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQ 164
+ D+E E R E +W + + V +F + D +A ++F +D FQ
Sbjct: 252 VKIDEERETEQGVRVGGEGRRE-EWAVKVDVDHPVADFHQRIPD---MAYKWEFELDVFQ 307
Query: 165 RSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE 224
+ +I SV V+A TS+GKT+ ALSNQK+REF+
Sbjct: 308 KQAILHLENHESVFVAAHTSAGKTV-----------------------ALSNQKYREFKL 344
Query: 225 TFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284
TFGD VGL+TGD IN+ A LIMTTEILR+MLY ++ D++ +V DEVHY
Sbjct: 345 TFGD--VGLITGDVQINQTASCLIMTTEILRSMLYNGSDVIR------DLEWVVFDEVHY 396
Query: 285 LSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS-RRPVPL 343
++D RG VWEE++I P+ V II LSATV N E A WIG+ K + S+ +RPVPL
Sbjct: 397 INDAERGVVWEEVLIMLPQHVHIILLSATVPNTLEFADWIGRTKKKKIFVISTLKRPVPL 456
Query: 344 TWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNN 403
+ T T GK + N L L K + G + K S+
Sbjct: 457 EHHLYTGTT--------GK------TSNELFLIVDGKKNFLTSGYNKALEAKKEKSKSSQ 502
Query: 404 IVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED 463
FG N + + VID L + +D LPA+ F F+++ D Q L
Sbjct: 503 ---GFGPKGTRGGHPNKDKNIWI-SVIDML---KKKDKLPAVAFTFSKKKIDENAQNLLS 555
Query: 464 CNLLDECEMSEVEL----ALKRFRILYPDAVREPAI---KGLLK-GVAAHHAGCLPIWKS 515
+L E SE+ + A+K+ + P + P + + LLK G+ HH+G LPI K
Sbjct: 556 KDLTTASEKSEIHIFFHSAIKKLK---PPDQKLPQVLQMESLLKNGIGVHHSGILPILKE 612
Query: 516 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAG 575
+E LFQR LVK++F+TET A G+NMPART V S+ K + L E QMAGRAG
Sbjct: 613 VVEMLFQRALVKILFSTETFAMGVNMPARTVVFDSIRKNDGTCFRDLLPGEYIQMAGRAG 672
Query: 576 RRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
RRG+D G V +L + + K++ L SQF +Y M+LNLL
Sbjct: 673 RRGLDTTGTVIILCKGDVPEMSDLHKMMLGKPTKLESQFRLTYSMILNLL 722
>gi|349579147|dbj|GAA24310.1| K7_Mtr4p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1073
Score = 281 bits (719), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 171/480 (35%), Positives = 255/480 (53%), Gaps = 36/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I RG SV+VSA TS+GKT++AE A ++ N++R+ YT+P+K
Sbjct: 143 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 202
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 203 ALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 254
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH +
Sbjct: 255 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 314
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ ++ RP PL Y + + ++DEK +S
Sbjct: 315 HIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS------------- 361
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
++ D NS + GQ S + + +++ +W + P I F F
Sbjct: 362 ---NQIGDDPNSTDSRGKKGQ-TYKGGSAKGDAKGDIYKIVKMIWKKKYN---PVIVFSF 414
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + + E + L P+ RE P IK +L +G+
Sbjct: 415 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 474
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 475 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 534
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 535 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 594
>gi|302757121|ref|XP_002961984.1| hypothetical protein SELMODRAFT_403447 [Selaginella moellendorffii]
gi|300170643|gb|EFJ37244.1| hypothetical protein SELMODRAFT_403447 [Selaginella moellendorffii]
Length = 1310
Score = 281 bits (719), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 182/494 (36%), Positives = 258/494 (52%), Gaps = 37/494 (7%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
+ ++A + F +DKFQ+ +I + SV V+A TS+GKT++AE A + + R YT
Sbjct: 325 IPDMAIQFPFELDKFQKEAIYHLEKNESVFVAAHTSAGKTVVAEYAFALSAKHCTRAVYT 384
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+K +SNQK+R+F E F +VGLLTGD +I EA LIMTTEILR+MLY+ +V
Sbjct: 385 SPIKTISNQKYRDFSEKF---DVGLLTGDVSIRPEASCLIMTTEILRSMLYKGADLVR-- 439
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
D++ +V DEVHY++D RG VWEE+II P+ V ++ LSATV N E A W+G+
Sbjct: 440 ----DIEWVVFDEVHYVNDAERGVVWEEVIIMLPQHVNLVLLSATVPNIREFADWVGRTK 495
Query: 329 GKTELIT-SSRRPVPLTWYFSTKTALLPLLDEK-----GKHMNRKLSLNYLQLSTSEVKP 382
K +T +++RPVPL L + + G + L + V P
Sbjct: 496 QKKIYVTGTTKRPVPLEHCLFYSGELHRICANETFLSLGVKAAKDAHLAKTTVKKGPVAP 555
Query: 383 YKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
+ G G+ + N V KNS RS+ Q + L +++
Sbjct: 556 TQGGRGNVQGRGGPGGRGGRGNKVIP-----EEKNSRGGPWRSETSQWYGLINVLSKKNL 610
Query: 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRIL---YPDAVREPA 494
LP + F F++ CD + L +L E + + A R + P +R
Sbjct: 611 LPVVVFCFSKSRCDQSADSLTGSDLTTSTEKGVIRVFCNKAFSRLKGTDRQLPQVLR--- 667
Query: 495 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
I+ LLK G+ HHAG LPI K +E LF RG++KV+F+TET A G+N PART K
Sbjct: 668 IEELLKRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVAFHGFRK 727
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLV 610
QL E QMAGRAGRRG+D G V+++ P EG + +LL L
Sbjct: 728 HDGKSFRQLYPGEYTQMAGRAGRRGLDTVGTVIVMCWDDIPDEG--DLRRLLTGKATKLE 785
Query: 611 SQFTASYGMVLNLL 624
SQF +Y M+LNLL
Sbjct: 786 SQFRLTYTMILNLL 799
>gi|345862325|ref|ZP_08814554.1| type III restriction enzyme, res subunit [Desulfosporosinus sp. OT]
gi|344324612|gb|EGW36161.1| type III restriction enzyme, res subunit [Desulfosporosinus sp. OT]
Length = 749
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 198/606 (32%), Positives = 301/606 (49%), Gaps = 84/606 (13%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
+ ++F +D FQ +++A G SV+V+APT +GKTL+A+ + R+ YT P+KA
Sbjct: 5 TYHEFTLDSFQEEALDAIDAGKSVIVAAPTGTGKTLVADYLIEKAMNEHLRVIYTAPIKA 64
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD 273
LSNQK+R+F++ FG++ VG++TGD +N A +LIMTTE+ RN +++ + L
Sbjct: 65 LSNQKYRDFKKQFGEDAVGIMTGDVVLNPTAPLLIMTTEVFRNQ------VITEDPNLEF 118
Query: 274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKTE 332
+ IV DE+H+L+D RGTVWEE II P +++I+ LSAT+ANA L WI I H
Sbjct: 119 ISHIVFDEIHWLNDEERGTVWEESIILAPAKMKILGLSATIANAQHLVDWIKSIRHEDVA 178
Query: 333 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
LI ++R VPL +++ TK L +NY QL + KD
Sbjct: 179 LIEEAKRVVPLEYFYYTKDTGL---------------VNYDQLWHYYRQKLKD------- 216
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+N N + ++ IR Q RD LPA++F+F+R+
Sbjct: 217 -----RINDENPFS-------PTTHLDLIRTIQ-------------RDHLPALFFVFSRK 251
Query: 453 GCD-AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVAAHHA 507
C A++ N L E VE K F+ P+A + + L KG+A HHA
Sbjct: 252 QCALKAMELATLANYLKSPERRTVE--EKFFQQFGPEADWSSSTRQLKRLCSKGIAYHHA 309
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
G LP K +EELF L+KV++ TET + GIN P + SL+K L ++E
Sbjct: 310 GLLPSQKVIVEELFLERLIKVLYCTETFSVGINYPVKAVCFDSLNKYDGRNFRPLANHEF 369
Query: 568 FQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA- 625
FQM+GRAGRRG+D +G LV Y K +EPL SQF +Y VLNL A
Sbjct: 370 FQMSGRAGRRGLDKKGFSFALVDLAYMEKSPPPKFQLNRLEPLTSQFRLTYNTVLNLTAT 429
Query: 626 --------------GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAA 671
A LS++ + +Q + LE A+ + ++ G++
Sbjct: 430 LTQEQIEIYFQKSFAAYSYRLSSDHLHNELIQIQQQLEGAQHQLCEAVGSFNCPLKHHPK 489
Query: 672 KDELCKIQKETDVL----TSEISDDAIDRKSR---RLLSEAAYKEMANLQEELKAEKRFR 724
+ EL +++K L S + + RK R +LLS++ ++ QE K + +
Sbjct: 490 RKELERLRKTYKALGPRKQSRVYGREMARKIRSWEKLLSQSPKSCLSGRQESCKDQSKAY 549
Query: 725 TELRRR 730
+++R
Sbjct: 550 LAIQQR 555
Score = 46.6 bits (109), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 1099 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 1143
D + +G+ AW+ G T+ E+ C LD+GD+ + RRTIDL+ Q+
Sbjct: 675 DPRVAGITYAWSQGQTFVEVQALCNLDEGDIISVFRRTIDLMRQM 719
>gi|342886340|gb|EGU86207.1| hypothetical protein FOXB_03286 [Fusarium oxysporum Fo5176]
Length = 1094
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 190/552 (34%), Positives = 287/552 (51%), Gaps = 57/552 (10%)
Query: 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209
++ A ++F++D FQ S+ + R SV+VSA TS+GKT++AE A + +R+ YT+
Sbjct: 148 EQPARTWNFKLDPFQSLSVASIEREESVLVSAHTSAGKTVVAEYAVAQCLKRNQRVIYTS 207
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSES 269
P+KALSNQK+R+F FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 208 PIKALSNQKYRDFEAIFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR--- 262
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
+V +V DE+HY+ D RG VWEE II P +V+ + LSAT+ NA + A WI +IH
Sbjct: 263 ---EVAWVVFDEIHYMRDKIRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHH 319
Query: 330 KT-ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
+ ++ + RP PL YF S T ++DEK + N + + N + E
Sbjct: 320 QACHVVYTDFRPTPLQNYFFPSGGTGARLIVDEKS-NFNEQ-NFNKVMQEVEE------- 370
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
+K AD N N N A S + ++I + P I
Sbjct: 371 -------KKGADPNDPNARQKGKGKNKKTNKGGADSGSDISKIIRMTI---KKKFNPVIV 420
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KG 501
F F++R C+ + + D+ E + V + RE P I LL +G
Sbjct: 421 FNFSKRECENLAMNISSLSFNDDSEKAMVRKVFNSAIESLSEGDRELPQIINLLPLLERG 480
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+ HH+G LPI K IE LFQ L+KV+FATET + G+NMPA+T V + ++K R
Sbjct: 481 IGVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVKRRP 540
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
LTS+E QMAGRAGRRG+D RG V+++ + +++ + L S F Y M+L
Sbjct: 541 LTSSEYIQMAGRAGRRGLDARGIVIMMIDDKLEPDTAKEIVTGHQDRLNSAFYLGYNMIL 600
Query: 622 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKE 681
NLL ++ +S E ++E+ F + + + + + EL +Q+E
Sbjct: 601 NLL---RIEAISPEF-----------------MLERCFHQFQNAASVPSLEKELMSLQQE 640
Query: 682 TDVLTSEISDDA 693
D + I+D++
Sbjct: 641 RD--NTSIADES 650
>gi|224003637|ref|XP_002291490.1| helicase [Thalassiosira pseudonana CCMP1335]
gi|220973266|gb|EED91597.1| helicase, partial [Thalassiosira pseudonana CCMP1335]
Length = 947
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 173/482 (35%), Positives = 265/482 (54%), Gaps = 32/482 (6%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A +Y F++D FQ+++I + SV+V+A TS+GKT++AE A ++ + +R+ YT+P+K
Sbjct: 1 AKVYPFQLDPFQQTAINYVEKNESVLVAAHTSAGKTVVAEYAIAKSLRDGQRVVYTSPIK 60
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+R+ +E F D VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 61 ALSNQKYRDLQEEFED--VGLMTGDITINPSATCLVMTTEILRSMLYRGSEVMR------ 112
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P +V+ + LSAT+ NA + WI +IH +
Sbjct: 113 EVAWVIYDEVHYMRDKERGVVWEESIILLPHKVRFVFLSATIPNAKQFVNWIAKIHHQPC 172
Query: 332 ELITSSRRPVPLTWYFSTKTA--LLPLLDEKGK--HMNRKLSLNYLQLSTSEVKPYKDGG 387
++ ++ RP PL Y + L ++DEKGK N + +++ LQ GG
Sbjct: 173 HVVYTNYRPTPLQHYIFPQGGDGLHLVVDEKGKFREANFQKAMSTLQ-----------GG 221
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+ A M+S GQ + S + +++ + +R++ P I F
Sbjct: 222 GGTDGAIADAMMDSGGGKGGRGQKRKRGGPAGKGPNSDLHRIVKLVM---TRNLNPVIVF 278
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KGV 502
F+++ C+ L+ + DE E + ++ L D P ++ LL +G+
Sbjct: 279 SFSKKDCEKYALELKREDYTDEVEKDLITQVYSNAIESLSEDDRTLPQVEALLPLLKRGI 338
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH G LPI K +E LF GL+K +FATET A GINMPA+T V ++ K +
Sbjct: 339 GIHHGGLLPILKEIVEILFSEGLIKALFATETFAIGINMPAKTVVFTNTRKFDGKEIRWV 398
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
TS E QM+GRAGRRG D+RG V+ + C +L+ +PL S + SY M+LN
Sbjct: 399 TSGEYIQMSGRAGRRGKDDRGVVIQMMDEKMEPTVCKGILYGDPDPLNSSYKISYNMLLN 458
Query: 623 LL 624
++
Sbjct: 459 MM 460
>gi|256062195|ref|XP_002570288.1| helicase [Schistosoma mansoni]
Length = 1074
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 174/480 (36%), Positives = 253/480 (52%), Gaps = 47/480 (9%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F +D FQ+ +I SV++SA TS+GKT++AE A + ++R+ YTTP+K
Sbjct: 151 AKTFPFTLDAFQQQAIICIDNNQSVLLSAHTSAGKTVVAEYAIATALREKQRVIYTTPIK 210
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF E F + VGLLTGD+ IN A +LIMTTEIL++MLY+ MV
Sbjct: 211 ALSNQKYREFFEAFPE--VGLLTGDATINPSASVLIMTTEILQSMLYKGASMVR------ 262
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HY+ D RG VWEE I+ P V+ + LSAT+ NA + A WI +H +
Sbjct: 263 EVGWVIFDEIHYMRDPERGVVWEETIVLLPDSVRYVFLSATIPNARQFAEWIAHLHHQPC 322
Query: 332 ELITSSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
+++S RPVPL Y L +LDE GK++ +
Sbjct: 323 HVVSSDCRPVPLRHYLYPVGSEGLFLVLDE-GKYLEQNF--------------------- 360
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R R S+N + Q S+ N + V Q++ + H R + P I F F
Sbjct: 361 ERAMRSFLSDESSN------KRQKSQVDYNKRSENNVIQIVRLVKH---RSLEPIIVFSF 411
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAA 504
+++ C+ L + + E V+ + L P+ P ++ +L +G+
Sbjct: 412 SKKECEIYALQLAKFDFTTDAEKKVVDEVFRNAIDGLSPEDRALPQVESVLPLLKRGIGI 471
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH G LP+ K IE LF L+K +FATET A G+NMPART + +S K +TS
Sbjct: 472 HHGGLLPLLKETIEILFSENLIKCLFATETFAMGLNMPARTVLFTSARKYDGQSYRWITS 531
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG D+ G V+L+ +E +++ PL S F +Y M+LNLL
Sbjct: 532 GEYIQMSGRAGRRGKDDSGTVILMVDESMTSELAHQIMMGPPPPLNSAFHITYNMLLNLL 591
>gi|413947563|gb|AFW80212.1| hypothetical protein ZEAMMB73_030566 [Zea mays]
Length = 979
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 175/483 (36%), Positives = 257/483 (53%), Gaps = 37/483 (7%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E+A Y F++D FQ SI R SV+VSA TS+GKT++AE A +++R+ YT+P
Sbjct: 76 EMAKQYPFKLDPFQSVSIACLERNESVLVSAHTSAGKTVVAEYAIAMAFRDKQRVIYTSP 135
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
LKALSNQK+RE + F D VGL+TGD ++ A L+MTTEILR MLY+ ++
Sbjct: 136 LKALSNQKYRELSQEFTD--VGLMTGDVTLHPNATCLVMTTEILRAMLYRGSEVIK---- 189
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V ++ DE+HY+ D RG VWEE II+ P ++++ LSAT++NA E A WI +H +
Sbjct: 190 --EVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICSLHKQ 247
Query: 331 -TELITSSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL Y + L ++DE G+ N+ +L S KP
Sbjct: 248 PCHVVYTDFRPTPLQHYMFPIGGSGLYLVVDENGQFRED----NFAKLQDSFAKP----- 298
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+ + + RK ++ + G +A S + +++ + R P I F
Sbjct: 299 NNQLDGRKGGGPKASGRIAKGG---------SASGNSDIYRIVKMIME---RKFQPVIIF 346
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL----KGV 502
F+RR C+ + + E E +E L + PAI+ +L +G+
Sbjct: 347 SFSRRECEHHAMSMSKLDFSTEEEKECIEQVFCNAIGCLVEEDRSLPAIELMLPLLKRGI 406
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
A HH+G LPI K +E LFQ GLVK +FATET A G+NMPA+T V +S+ K +
Sbjct: 407 AVHHSGLLPIIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYI 466
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
S E QM+GRAGRRG D RG V++ ++ PLVS F SY +LN
Sbjct: 467 GSGEYIQMSGRAGRRGKDERGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSYYTILN 526
Query: 623 LLA 625
L++
Sbjct: 527 LMS 529
>gi|357507885|ref|XP_003624231.1| Helicase, putative [Medicago truncatula]
gi|355499246|gb|AES80449.1| Helicase, putative [Medicago truncatula]
Length = 983
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 171/480 (35%), Positives = 254/480 (52%), Gaps = 40/480 (8%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A + F +D FQ SI SV+VSA TS+GKT++A A ++ N++R+ YT+P
Sbjct: 52 EPAKTFPFTLDPFQSQSITCLENSESVMVSAHTSAGKTVVALYAIAMSLRNKQRVIYTSP 111
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+REF+E F D VGL+TGD I+ A L+MTTEI R+M Y+ +
Sbjct: 112 IKALSNQKYREFKEEFSD--VGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTR---- 165
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V I+ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H +
Sbjct: 166 --EVAWIIFDEVHYMRDRERGVVWEESIVMSPKNARFVFLSATVPNAKEFADWVAKVHQQ 223
Query: 331 -TELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL Y S L ++DEKGK + Q + + + P DG
Sbjct: 224 PCHIVYTDYRPTPLQHYIFPSGSEGLYLVVDEKGKFRE-----DSFQKALNALIPAADGD 278
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
++ N++ + G+ A S + +++ + R P I F
Sbjct: 279 RKKENAKWQKGL-------VLGK---------AAEESDIFKMVKMIIQ---RQYDPVILF 319
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAIKGLL----KGV 502
F++R C+ + +L + E +E + +L D + P + +L +G+
Sbjct: 320 SFSKRECEFLAMQMAKMDLNGDIEKDNIEKIFWCAMDMLSDDDKKLPQVSNMLPLLKRGI 379
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH+G LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K +
Sbjct: 380 GVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWI 439
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
TS E QM+GRAGRRGID+RG +L+ ++ + L S F SY M+LN
Sbjct: 440 TSGEYIQMSGRAGRRGIDDRGVCILMVDEKMEPSTAKNMVKGAADSLNSAFHLSYNMILN 499
>gi|297787672|pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear
Exosome
Length = 1108
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 171/480 (35%), Positives = 255/480 (53%), Gaps = 36/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I RG SV+VSA TS+GKT++AE A ++ N++R+ YT+P+K
Sbjct: 178 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 237
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 238 ALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 289
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH +
Sbjct: 290 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 349
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ ++ RP PL Y + + ++DEK +S
Sbjct: 350 HIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS------------- 396
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
++ D NS + GQ S + + +++ +W + P I F F
Sbjct: 397 ---NQIGDDPNSTDSRGKKGQ-TYKGGSAKGDAKGDIYKIVKMIWKKKYN---PVIVFSF 449
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + + E + L P+ RE P IK +L +G+
Sbjct: 450 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 509
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 510 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 569
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 570 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 629
>gi|190409449|gb|EDV12714.1| ATP-dependent RNA helicase DOB1 [Saccharomyces cerevisiae RM11-1a]
Length = 1073
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 171/480 (35%), Positives = 255/480 (53%), Gaps = 36/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I RG SV+VSA TS+GKT++AE A ++ N++R+ YT+P+K
Sbjct: 143 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 202
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 203 ALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 254
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH +
Sbjct: 255 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 314
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ ++ RP PL Y + + ++DEK +S
Sbjct: 315 HIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS------------- 361
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
++ D NS + GQ S + + +++ +W + P I F F
Sbjct: 362 ---NQIGDDPNSTDSRGKKGQ-TYKGGSAKGDAKGDIYKIVKMIWKKKYN---PVIVFSF 414
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + + E + L P+ RE P IK +L +G+
Sbjct: 415 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 474
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 475 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 534
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 535 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 594
>gi|350854524|emb|CAY19106.2| helicase, putative [Schistosoma mansoni]
Length = 1074
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 174/480 (36%), Positives = 253/480 (52%), Gaps = 47/480 (9%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F +D FQ+ +I SV++SA TS+GKT++AE A + ++R+ YTTP+K
Sbjct: 151 AKTFPFTLDAFQQQAIICIDNNQSVLLSAHTSAGKTVVAEYAIATALREKQRVIYTTPIK 210
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF E F + VGLLTGD+ IN A +LIMTTEIL++MLY+ MV
Sbjct: 211 ALSNQKYREFFEAFPE--VGLLTGDATINPSASVLIMTTEILQSMLYKGASMVR------ 262
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HY+ D RG VWEE I+ P V+ + LSAT+ NA + A WI +H +
Sbjct: 263 EVGWVIFDEIHYMRDPERGVVWEETIVLLPDSVRYVFLSATIPNARQFAEWIAHLHHQPC 322
Query: 332 ELITSSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
+++S RPVPL Y L +LDE GK++ +
Sbjct: 323 HVVSSDCRPVPLRHYLYPVGSEGLFLVLDE-GKYLEQNF--------------------- 360
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R R S+N + Q S+ N + V Q++ + H R + P I F F
Sbjct: 361 ERAMRSFLSDESSN------KRQKSQVDYNKRSENNVIQIVRLVKH---RSLEPIIVFSF 411
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAA 504
+++ C+ L + + E V+ + L P+ P ++ +L +G+
Sbjct: 412 SKKECEIYALQLAKFDFTTDAEKKVVDEVFRNAIDGLSPEDRALPQVESVLPLLKRGIGI 471
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH G LP+ K IE LF L+K +FATET A G+NMPART + +S K +TS
Sbjct: 472 HHGGLLPLLKETIEILFSENLIKCLFATETFAMGLNMPARTVLFTSARKYDGQSYRWITS 531
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG D+ G V+L+ +E +++ PL S F +Y M+LNLL
Sbjct: 532 GEYIQMSGRAGRRGKDDSGTVILMVDERMTSELAHQIMMGPPPPLNSAFHITYNMLLNLL 591
>gi|452822987|gb|EME30001.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 1258
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 195/551 (35%), Positives = 287/551 (52%), Gaps = 66/551 (11%)
Query: 87 EEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEM 146
EE YD + +V +Q ++F+ + E +W V+ V EF
Sbjct: 271 EEKRLTYDSLHEQVDRILQSQQNDFQSLILERKRSRFVTEEEWAIVDN--ESVSEFWK-- 326
Query: 147 IDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIF 206
V LA + F +D FQ+ +I R +V V+A TS+GKT++AE A + +Q +
Sbjct: 327 -SVPNLALEFPFELDDFQKRAILHLEREENVFVTAHTSAGKTVVAEYAIALAMQHQTKCI 385
Query: 207 YTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVS 266
YT+P+K LSNQK+R+F++ F D VG++TGD +I+ + LI+TTEILR+MLY+ +V
Sbjct: 386 YTSPIKTLSNQKYRDFQDKFSD--VGIITGDISIHPQGSCLIVTTEILRSMLYKGADVVR 443
Query: 267 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326
D++ +V DEVHY++D RG VWEE+II P ++II LSATV NA + A W+G+
Sbjct: 444 ------DIEFVVFDEVHYINDEERGVVWEEVIIMLPPRIKIIMLSATVPNALDFAKWVGR 497
Query: 327 I-HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
K +I++ RPVPL K ++ L+D KG R L +Y ++S + K+
Sbjct: 498 TRQSKVFVISTQYRPVPLQHSAFWKGDMITLVDAKG----RFLEESYRRIS----QIVKE 549
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
+ R S +T+F LR + + P +
Sbjct: 550 EKANRLGGSFGGKKGSWTKLTNF---------------------------LRKQQLTPTV 582
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDEC-------EMSEVELA-LKRFRILYPDAVREPAIKG 497
F F++R C+ A L+ + + + E +A LKR P R +K
Sbjct: 583 VFCFSKRRCEEAADSLQAVDFTEGASEKSNIHQFVEHSIARLKREDRQLPQIER---LKE 639
Query: 498 LLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
+LK G+A HHAG LPI K +E LFQ+GLV+++FATET A G+NMPART V SSL K
Sbjct: 640 MLKRGIAVHHAGILPIMKECVEILFQKGLVRILFATETFAMGVNMPARTVVFSSLRKHDG 699
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP---LVSQF 613
+ E QMAGRAGRRG+D G+V++ + E + L + P L S+F
Sbjct: 700 RSFRFVEPGEYIQMAGRAGRRGLDAVGNVLIYLS--EDIPDAATLKYILTGPPIRLSSRF 757
Query: 614 TASYGMVLNLL 624
+Y M+LNLL
Sbjct: 758 RLTYNMILNLL 768
>gi|151945035|gb|EDN63286.1| DEAD box family ATP dependent helicase required for mRNA export
from the nucleus [Saccharomyces cerevisiae YJM789]
Length = 1073
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 171/480 (35%), Positives = 255/480 (53%), Gaps = 36/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I RG SV+VSA TS+GKT++AE A ++ N++R+ YT+P+K
Sbjct: 143 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 202
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 203 ALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 254
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH +
Sbjct: 255 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 314
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ ++ RP PL Y + + ++DEK +S
Sbjct: 315 HIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS------------- 361
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
++ D NS + GQ S + + +++ +W + P I F F
Sbjct: 362 ---NQIGDDPNSTDSRGKKGQ-TYKGGSAKGDAKGDIYKIVKMIWKKKYN---PVIVFSF 414
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + + E + L P+ RE P IK +L +G+
Sbjct: 415 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 474
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 475 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 534
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 535 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 594
>gi|6322411|ref|NP_012485.1| Mtr4p [Saccharomyces cerevisiae S288c]
gi|1352980|sp|P47047.1|MTR4_YEAST RecName: Full=ATP-dependent RNA helicase DOB1; AltName: Full=mRNA
transport regulator MTR4
gi|1008185|emb|CAA89341.1| MTR4 [Saccharomyces cerevisiae]
gi|285812851|tpg|DAA08749.1| TPA: Mtr4p [Saccharomyces cerevisiae S288c]
gi|392298385|gb|EIW09482.1| Mtr4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1073
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 171/480 (35%), Positives = 255/480 (53%), Gaps = 36/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I RG SV+VSA TS+GKT++AE A ++ N++R+ YT+P+K
Sbjct: 143 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 202
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 203 ALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 254
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH +
Sbjct: 255 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 314
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ ++ RP PL Y + + ++DEK +S
Sbjct: 315 HIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS------------- 361
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
++ D NS + GQ S + + +++ +W + P I F F
Sbjct: 362 ---NQIGDDPNSTDSRGKKGQ-TYKGGSAKGDAKGDIYKIVKMIWKKKYN---PVIVFSF 414
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + + E + L P+ RE P IK +L +G+
Sbjct: 415 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 474
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 475 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 534
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 535 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 594
>gi|46109548|ref|XP_381832.1| hypothetical protein FG01656.1 [Gibberella zeae PH-1]
Length = 1094
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 187/552 (33%), Positives = 289/552 (52%), Gaps = 57/552 (10%)
Query: 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209
++ A ++F++D FQ S+ + R S++VSA TS+GKT++AE A + +R+ YT+
Sbjct: 150 EQPARTWNFKLDPFQSLSVASIEREESILVSAHTSAGKTVVAEYAVAQCLKRNQRVIYTS 209
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSES 269
P+KALSNQK+R+F FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 210 PIKALSNQKYRDFEAIFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR--- 264
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH
Sbjct: 265 ---EVAWVVFDEIHYMRDKTRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHH 321
Query: 330 KT-ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
+ ++ + RP PL YF + + ++DEK + N + + N + E
Sbjct: 322 QACHVVYTDFRPTPLQNYFFPAGGSGARLIVDEKS-NFNEQ-NFNKVMQEVEE------- 372
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
+K AD N N N A S + ++I + P I
Sbjct: 373 -------KKGADPNDPNARQKGKGKNKKTNKGGADNGSDIAKIIRMTI---KKKFNPVIV 422
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KG 501
F F++R C+ + + D+ E + V + RE P I LL +G
Sbjct: 423 FNFSKRECENMAMNISSLSFNDDSEKAMVRKVFHNAIESLSEQDRELPQIINLLPLLERG 482
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+ HH+G LPI K IE LFQ L+KV+FATET + G+NMPA+T V + ++K R
Sbjct: 483 IGVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVKRRP 542
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
LTS+E QMAGRAGRRG+D RG V+++ + +++ + L S F Y M+L
Sbjct: 543 LTSSEYIQMAGRAGRRGLDARGIVIMMIDDKLEPDTAKEIVTGHQDRLNSAFYLGYNMIL 602
Query: 622 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKE 681
NLL ++ +S E ++E+ F + + + + + EL +Q+E
Sbjct: 603 NLL---RIEAISPEF-----------------MLERCFHQFQNAASVPSLEKELMSLQQE 642
Query: 682 TDVLTSEISDDA 693
D ++ I+D++
Sbjct: 643 RD--STSIADES 652
>gi|328865723|gb|EGG14109.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum]
Length = 1058
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 189/592 (31%), Positives = 295/592 (49%), Gaps = 93/592 (15%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ +S+ R SV+VSA TS+GKT++AE A + + +R+ YT+P+K
Sbjct: 149 ARTYPFTLDPFQATSVACIERKESVLVSAHTSAGKTVVAEYAIATALRSGQRVIYTSPIK 208
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+R+ ETFGD VGL+TGD I+ A L+MTTEILR+MLY+ ++
Sbjct: 209 ALSNQKYRDLNETFGD--VGLMTGDITISPNASCLVMTTEILRSMLYRGSELMR------ 260
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HYL D RG VWEE II P V+ + LSAT+ NA E A WI +IH +
Sbjct: 261 EVAWVIFDEIHYLRDKERGVVWEETIILLPDSVKFVFLSATIPNAKEFAAWIAKIHSQPC 320
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP+PL Y S L ++DEKG + L+ E+ GG+
Sbjct: 321 HVVYTDYRPIPLQHYIFPSGGDGLHLVVDEKGVFREENFIKSLSGLNQPEL-----GGNN 375
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R+ +A N+ +++ K + R+ P I F F
Sbjct: 376 RKKGPNNAKKGPNDC------YKIVK-------------------MIMERNYQPVIIFSF 410
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP-----AIKGLL----K 500
+++ C+ + + +E E VE D++ E A+ +L +
Sbjct: 411 SKKDCETYALQMSKLDFNNEEERKAVETIFNN----AIDSLSESDKSLTAVVNILPLLKR 466
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+ HHAG LPI K IE LFQ G +K +FATET + G+NMPA+T + +++ K
Sbjct: 467 GIGIHHAGLLPILKEIIEILFQYGYIKALFATETFSIGLNMPAKTVIFTNVRKFDGDQLR 526
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV-EPLVSQFTASYGM 619
++ E QM+GRAGRRG+D RG +V++ + + K + GV + L S F Y M
Sbjct: 527 WVSGGEYIQMSGRAGRRGLDERG-IVIMMVDEKMEPDVAKGMVKGVADRLTSSFWIGYSM 585
Query: 620 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 679
+LN++ + + KL+++SF Y +++ D++ KI+
Sbjct: 586 LLNMMRVEDI--------------------DPEKLLKRSFHQYQQESIIPQLTDKVQKIE 625
Query: 680 KETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRM 731
E D + ++ +E A +E L+++L + R +R M
Sbjct: 626 AEKDQI--------------QIKNETAVQEFFGLKQQL---AKLRDGMREFM 660
>gi|256271011|gb|EEU06122.1| Mtr4p [Saccharomyces cerevisiae JAY291]
Length = 1073
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 171/480 (35%), Positives = 255/480 (53%), Gaps = 36/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I RG SV+VSA TS+GKT++AE A ++ N++R+ YT+P+K
Sbjct: 143 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 202
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 203 ALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 254
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH +
Sbjct: 255 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 314
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ ++ RP PL Y + + ++DEK +S
Sbjct: 315 HIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS------------- 361
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
++ D NS + GQ S + + +++ +W + P I F F
Sbjct: 362 ---NQIGDDPNSTDSRGKKGQ-TYKGGSAKGDAKGDIYKIVKMIWKKKYN---PVIVFSF 414
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + + E + L P+ RE P IK +L +G+
Sbjct: 415 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 474
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 475 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 534
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 535 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 594
>gi|402573154|ref|YP_006622497.1| superfamily II RNA helicase [Desulfosporosinus meridiei DSM 13257]
gi|402254351|gb|AFQ44626.1| superfamily II RNA helicase [Desulfosporosinus meridiei DSM 13257]
Length = 749
Score = 280 bits (717), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 174/481 (36%), Positives = 253/481 (52%), Gaps = 66/481 (13%)
Query: 154 SIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213
+ ++ +D FQ +++A G SV+V+APT +GKTL+A+ + R+ YT P+KA
Sbjct: 5 TYHEMSLDPFQEEALDAIDAGKSVIVAAPTGTGKTLVADYLIEKAMKEHLRVIYTAPIKA 64
Query: 214 LSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD 273
LSNQKFR+F++ FG+ VG++TGD +N A +LIMTTE+ RN + ++ + L
Sbjct: 65 LSNQKFRDFKKMFGEEAVGIMTGDVVLNPNAPLLIMTTEVFRNQV------ITEDPSLEF 118
Query: 274 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI-HGKTE 332
V IV DE+H+L+D RGTVWEE II P +++I+ LSAT+ANA L WI I H +
Sbjct: 119 VSHIVFDEIHWLNDEERGTVWEESIILAPPKMKILGLSATIANAKHLVDWIESIRHEEVA 178
Query: 333 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
LI R VPL +++ TK L D+ ++ RKL
Sbjct: 179 LIEEHNRVVPLEYFYYTKDTGLVDYDQLWRYYRRKLK----------------------- 215
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+ N FG ++ IR Q R LPA++F+F+RR
Sbjct: 216 -------DRTNDENPFG----PTTHLDLIRTIQ-------------RHHLPALFFVFSRR 251
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFRILY------PDAVREPAIKGLL-KGVAAH 505
C A++ +E N+ + + +E ++ RF L+ + R+ +K L KG+A H
Sbjct: 252 QC--AIKAMELANISNYLKPAERKIVEDRFIHLFGSEFDWSSSTRQ--LKRLCSKGIAYH 307
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP K +EELF L+KV++ TET + GIN P + SL+K L ++
Sbjct: 308 HAGLLPSQKVIVEELFLERLIKVLYCTETFSVGINYPVKAVCFDSLNKYDGRNFRPLANH 367
Query: 566 ELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E FQM+GRAGRRG+D +G+ LV Y K +EPL SQF +Y VLNL
Sbjct: 368 EFFQMSGRAGRRGLDEKGYSFALVDLGYMEKSPPPKFQLNRLEPLTSQFRLTYNTVLNLT 427
Query: 625 A 625
A
Sbjct: 428 A 428
Score = 47.8 bits (112), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 1098 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 1143
D + +G+ AW+ G T+ E+ C LD+GD+ + RRTIDL+ Q+
Sbjct: 674 FDPRVAGITHAWSQGSTFIEVQAMCNLDEGDIISVFRRTIDLMRQM 719
>gi|255581147|ref|XP_002531387.1| helicase, putative [Ricinus communis]
gi|223529017|gb|EEF31007.1| helicase, putative [Ricinus communis]
Length = 962
Score = 280 bits (717), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 188/575 (32%), Positives = 294/575 (51%), Gaps = 61/575 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ+ S+ R SV+VSA TS+GKT +AE A +++R+ YT+PLK
Sbjct: 67 AKTYPFELDPFQKVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLK 126
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE + F D VGL+TGD ++ A L+MTTEILR MLY+ + L
Sbjct: 127 ALSNQKYRELHQEFQD--VGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEI------LK 178
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HY+ D RG VWEE II+ P E++++ LSAT++NA E A WI +H +
Sbjct: 179 EVAWVIFDEIHYMKDRERGVVWEESIIFLPPEIKMVFLSATMSNATEFAEWICHLHKQPC 238
Query: 332 ELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 390
++ + RP PL Y F L L+ ++ + N+++L + K
Sbjct: 239 HVVYTDFRPTPLQHYVFPMGGVGLYLVVDENEQFRED---NFVKLQDTFTK--------- 286
Query: 391 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450
+K D N ++ G +++K NA S + +++ + R P I F F+
Sbjct: 287 ---QKVGDWNKSS--NGKGSGRIAKAG-NASAGSDIYKIVKMIM---ERKFQPVIVFSFS 337
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAAH 505
RR C+ + + + E VE K + + R+ PAI+ +L +G+A H
Sbjct: 338 RRECEQHAMSMSKLDFNTQEEKDVVEQVFKNAILCLNEEDRDLPAIELMLPLLQRGIAVH 397
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
H+G LP+ K +E LFQ GLVK +FATET A G+NMPA+T V +++ K + S
Sbjct: 398 HSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSG 457
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 625
E QM+GRAGRRG D+RG +++ ++ PLVS F SY +LNL+
Sbjct: 458 EYIQMSGRAGRRGKDDRGICIIMIDERMEMNTIKDMILGKPAPLVSTFRLSYYSILNLMR 517
Query: 626 GAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL 685
A+ A +++ SF + + ++ K+++E VL
Sbjct: 518 RAEGQFT------------------AEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAAVL 559
Query: 686 TSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAE 720
+ + + + +L EMA L++++ AE
Sbjct: 560 DASGEAEVAEYHNLKL-------EMAQLEKKMMAE 587
>gi|328711657|ref|XP_001949040.2| PREDICTED: superkiller viralicidic activity 2-like 2-like
[Acyrthosiphon pisum]
Length = 1021
Score = 280 bits (717), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 174/485 (35%), Positives = 258/485 (53%), Gaps = 53/485 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A +Y+F +D FQ+ +I SV+VSA TS+GKT++AE + ++ +R+ YTTP+K
Sbjct: 111 AKVYEFDLDPFQKEAIVCIENNQSVLVSAHTSAGKTVVAEYSIALSLRESKRVIYTTPIK 170
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF E F D VGL+TGD IN A LIMTTEILR+MLY+ + L
Sbjct: 171 ALSNQKYREFHEEFVD--VGLITGDVTINPSASCLIMTTEILRSMLYRGSEI------LK 222
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HY+ D RG VWEE +I P V+++ LSAT+ NA + A W+ +H +
Sbjct: 223 EVGWVIFDEIHYMRDKERGYVWEETLILLPDNVRLVFLSATIPNARQFAEWVAHLHNQPC 282
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHM--NRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL Y + L ++DE K N ++N L T +P K+ G
Sbjct: 283 HVVYTEYRPTPLQHYLYPAGGEGLHLIVDENNKFREDNFAAAMNVLSNVT---QPVKNWG 339
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
R + + D SN + + R+ P I F
Sbjct: 340 QPNRPTANNPDNESN--------------------------CFKLVKMIMERNFAPVIVF 373
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF----RILYPDAVREPAIKGLL---- 499
F+++ C+ Y + LD +E L K F ++L + + PA+ ++
Sbjct: 374 SFSKKDCE---NYAMQMSKLDFTSDTEKGLIDKLFENATKVLSEEDRKLPAVINIIPLIR 430
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+G+ HH G LPI K IE LF GL+KV++ATET A G+NMPART + ++ K R
Sbjct: 431 RGIGIHHGGLLPILKETIEILFGEGLLKVLYATETFAMGLNMPARTVLFTAPRKFDGKER 490
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
+TS E QM+GRAGRRG+D++G V+L+ + ++ + L S F +Y M
Sbjct: 491 RFITSGEYIQMSGRAGRRGLDDKGIVMLIIDEKVSPDTVRNIVQGKPDSLNSAFHLTYNM 550
Query: 620 VLNLL 624
VLNL+
Sbjct: 551 VLNLM 555
>gi|406880507|gb|EKD28844.1| hypothetical protein ACD_79C00185G0002 [uncultured bacterium]
Length = 639
Score = 280 bits (717), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 172/484 (35%), Positives = 259/484 (53%), Gaps = 70/484 (14%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
+ I+DF+ DKFQ +IE+ G S++VSAPT +GKT IAE +++ + I YT P+K
Sbjct: 4 SKIHDFQYDKFQLDAIESVNNGHSLIVSAPTGAGKTAIAEYVCHDSISKGKGIIYTAPIK 63
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+R+F +G + VG++TGD ++N AQILIMTTEI RN L + ES
Sbjct: 64 ALSNQKYRDFTTRYGKDKVGIVTGDVSLNPYAQILIMTTEIFRNRL------LEGESFYE 117
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI-GQIHGKT 331
+ ++ DE+HYL D+SRGTVWEE +I+ PK ++I+ LSAT+ N +L WI
Sbjct: 118 YKEWVIFDEIHYLDDVSRGTVWEESLIFFPKVLKILALSATIPNIFQLRDWIKSIHKIPI 177
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
++I +RPVPL++YF + + K N+ L QL S+
Sbjct: 178 DIIIEDKRPVPLSFYF--------MAENKFYTYNKNLK----QLLQSK------------ 213
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
H+ N I+ + + HL+ + + P I+F F+R
Sbjct: 214 ------------------NHKAPPNRIDTL-----------INHLKDQQLFPTIYFSFSR 244
Query: 452 RGCDAAVQYLEDCNLLDECEMSEV----ELALKRFRILY-PDAVR-EPAIKGLLKGVAAH 505
+ C+ + + NL+D E ++ + +K F++ P A+ P IK G+A H
Sbjct: 245 KRCEILARECKKFNLVDSDEQEKILQKYDELVKMFKVENDPHALELVPFIKC---GIAYH 301
Query: 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565
HAG LP K +E LF L+K++F TET A GINMP++T V L K + L +
Sbjct: 302 HAGMLPTLKEIVERLFTSRLIKLIFTTETFALGINMPSKTVVFDELRKFYGTNFDFLKTR 361
Query: 566 ELFQMAGRAGRRGIDNRGHVV-LVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+ +QMAGRAGRRG D G V +V + + + ++F EP++SQF ++Y +L+L
Sbjct: 362 DFYQMAGRAGRRGFDESGAVYSIVSSRRMSSRKLEDIIFGAPEPVLSQFNSNYATILSLY 421
Query: 625 AGAK 628
K
Sbjct: 422 GELK 425
>gi|154272421|ref|XP_001537063.1| antiviral helicase SKI2 [Ajellomyces capsulatus NAm1]
gi|150409050|gb|EDN04506.1| antiviral helicase SKI2 [Ajellomyces capsulatus NAm1]
Length = 1298
Score = 280 bits (717), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 174/509 (34%), Positives = 259/509 (50%), Gaps = 58/509 (11%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V + E+ F + + D +A + F +D FQ+ ++ G SV V+A TS+GK
Sbjct: 316 EWAHVVDINKEITNFYDLVPD---MAREWPFELDTFQKEAVYHLENGDSVFVAAHTSAGK 372
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A + + YT+P+KALSNQKFR+FR TF D VG+LTGD IN EA L
Sbjct: 373 TVVAEYAIALAAKHMTKAIYTSPIKALSNQKFRDFRNTFED--VGILTGDVQINPEASCL 430
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D+ RG VWEE+II P+ V +
Sbjct: 431 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTL 484
Query: 308 ICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLD------EK 360
I LSATV N E A W+G+ K +I++ +RPVPL Y ++ ++D EK
Sbjct: 485 ILLSATVPNTYEFASWVGRTKKKDIYVISTPKRPVPLEHYLWADKSMHKIVDSNKNFIEK 544
Query: 361 G----------------------KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHAD 398
G + N + + + GG +R +++
Sbjct: 545 GWKKVDDILSGRDKLRTQKATDAQSNNSRGGHGDRGRGGQAQRGNQRGGPQRGGTQRGGV 604
Query: 399 MNSNNIVTSFGQHQLSKNSINAIRRSQVPQV-----------IDTLWHLRSRDMLPAIWF 447
G+ Q + + I R+ + + HLR ++LPA F
Sbjct: 605 QQQRGCTQQRGRGQPAPHRTGNIARTGRGGGRTTVAQDRNVWVHLVQHLRKENLLPACVF 664
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR--FRILYPDAVREPAIKG----LLKG 501
+F+++ C+ L + + E S + + +++ R+ D V P I+ L +G
Sbjct: 665 VFSKKRCEENADSLSNQDFCTAAEKSSIHMIIEKSLARLKAEDRVL-PQIRRVRELLSRG 723
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+ HH G LPI K +E LF + LVKV+FATET A G+N+P RT V S K
Sbjct: 724 IGVHHGGLLPIIKEIVEILFAKTLVKVLFATETFAMGLNLPTRTVVFSGFRKHDGRSFRD 783
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQT 590
L E QMAGRAGRRG+D G V++V +
Sbjct: 784 LLPGEYTQMAGRAGRRGLDTVGSVIIVTS 812
>gi|194758417|ref|XP_001961458.1| GF14920 [Drosophila ananassae]
gi|190615155|gb|EDV30679.1| GF14920 [Drosophila ananassae]
Length = 1047
Score = 280 bits (717), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 196/572 (34%), Positives = 289/572 (50%), Gaps = 58/572 (10%)
Query: 76 EYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDS-SPAPSWREEFKWQRV-- 132
E D + DDEE ++ + SDE Q+ D + E ++D P + E R+
Sbjct: 46 EADQKEEPSDDEEKVNKRAKQDPKSSDEEQEDDKKDEDANDEVDPEDTADLEALRTRIVT 105
Query: 133 ------EKLCNEVKEFGN-EMIDVDELASI----YDFRIDKFQRSSIEAFLRGSSVVVSA 181
E +EV + E I + + Y F +D FQR +I SV+VSA
Sbjct: 106 HLLESPESCTHEVAAHPDHEYIPLKPFTGVPAKEYPFVLDPFQRQAILCIDNSQSVLVSA 165
Query: 182 PTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAIN 241
TS+GKT++AE A ++A ++R+ YTTP+KALSNQKFREF + F D VGL+TGD IN
Sbjct: 166 HTSAGKTVVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFKD--VGLVTGDVTIN 223
Query: 242 REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC 301
A LIMTTEILRNMLY+ ++ +V ++ DE+HY+ D RG VWEE +I
Sbjct: 224 PSASCLIMTTEILRNMLYRGSEIMR------EVGWVIFDEIHYMRDKERGVVWEETLILL 277
Query: 302 PKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF--STKTALLPLLD 358
P V+ + LSAT+ NA + A W+ +H + ++ + RP PL Y + + ++D
Sbjct: 278 PDNVRYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVD 337
Query: 359 EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSI 418
EKG S L+ + D S R+ K A+ NI
Sbjct: 338 EKGHFKEDNFSTAMAVLANAGEAAKGDQKS-RKGGIKGANAGQTNI-------------- 382
Query: 419 NAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVE 476
+ + R+ P I F F+++ C+ A+Q + D N DE ++ + E
Sbjct: 383 -----------FKIVKMIMERNFAPVIIFSFSKKDCEIYAMQMAKLDFNTADEKKLVD-E 430
Query: 477 LALKRFRILYPDAVREPAIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT 532
+ +L + R P ++ +L +G+ HH G LPI K IE LF GL+K +FAT
Sbjct: 431 VFNNAMDVLSAEDRRLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFAT 490
Query: 533 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592
ET A G+NMPART + ++ K ++S E QMAGRAGRRG+D++G V+L+
Sbjct: 491 ETFAMGLNMPARTVLFTAPRKFDGKDFRWISSGEYIQMAGRAGRRGLDDKGIVILMIDEK 550
Query: 593 EGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
++ +P+ S F +Y MVLNLL
Sbjct: 551 VSPAVGRGIVQGKADPINSAFHLTYNMVLNLL 582
>gi|365764987|gb|EHN06505.1| Mtr4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1031
Score = 280 bits (717), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 256/480 (53%), Gaps = 36/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I RG SV+VSA TS+GKT++AE A ++ N++R+ YT+P+K
Sbjct: 101 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 160
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 161 ALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 212
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH +
Sbjct: 213 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 272
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ ++ RP PL Y + + ++DEK N+ + S D
Sbjct: 273 HIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREE----NFQKAMASISNQIGD---- 324
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
D NS + GQ S + + +++ +W + P I F F
Sbjct: 325 --------DPNSTDSRGKKGQ-TYKGGSAKGDAKGDIYKIVKMIWKKKYN---PVIVFSF 372
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + + E + L P+ RE P IK +L +G+
Sbjct: 373 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 432
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 433 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 492
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 493 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 552
>gi|242056171|ref|XP_002457231.1| hypothetical protein SORBIDRAFT_03g003740 [Sorghum bicolor]
gi|241929206|gb|EES02351.1| hypothetical protein SORBIDRAFT_03g003740 [Sorghum bicolor]
Length = 1004
Score = 280 bits (716), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 182/488 (37%), Positives = 262/488 (53%), Gaps = 47/488 (9%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E+A Y F +D FQ +SI R SV+VSA TS+GKT++AE A +++R+ YT+P
Sbjct: 76 EMAKQYPFNLDPFQSTSIACLERNESVLVSAHTSAGKTVVAEYAIAMAFRDKQRVIYTSP 135
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
LKALSNQK+RE + F D VGL+TGD ++ A L+MTTEILR MLY+ ++
Sbjct: 136 LKALSNQKYRELSQEFTD--VGLMTGDVTLHPNATCLVMTTEILRAMLYRGSEVIK---- 189
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V ++ DE+HY+ D RG VWEE II+ P ++++ LSAT++NA E A WI +H +
Sbjct: 190 --EVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICSLHKQ 247
Query: 331 -TELITSSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL Y + L ++DE G+ R+ + + LQ S ++ DG
Sbjct: 248 PCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQF--REDNFSKLQDSFAKQNNQLDG- 304
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
RK ++ + G +A S + +++ + R P I F
Sbjct: 305 ------RKGGGPKASGRIAKGG---------SASGNSDIYRIVKMIME---RKFQPVIIF 346
Query: 448 IFNRRGCDAAVQYLE--DCNLLDECEMSEVELALKRFRILYPDAVRE----PAIKGLL-- 499
F+RR C+ + D N DE E E + FR V E PAI+ +L
Sbjct: 347 SFSRRECEHHAMSMSKLDFNTEDEKECIE-----QVFRNAIGCLVEEDRSLPAIELMLPL 401
Query: 500 --KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
+G+A HH+G LPI K +E LFQ GLVK +FATET A G+NMPA+T V +S+ K
Sbjct: 402 LKRGIAVHHSGLLPIIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGD 461
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617
+ S E QM+GRAGRRG D RG V++ ++ PLVS F SY
Sbjct: 462 TNRYIGSGEYIQMSGRAGRRGKDERGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSY 521
Query: 618 GMVLNLLA 625
+LNL++
Sbjct: 522 YTILNLMS 529
>gi|359484919|ref|XP_002266524.2| PREDICTED: superkiller viralicidic activity 2-like 2-like [Vitis
vinifera]
Length = 995
Score = 280 bits (716), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 172/485 (35%), Positives = 260/485 (53%), Gaps = 36/485 (7%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
++A Y F +D FQ+ S+ R SV+VSA TS+GKT +AE + +++R+ YT+P
Sbjct: 69 KMAKTYPFTLDPFQQVSVACLERNESVLVSAHTSAGKTAVAEYSIAMAFRDKQRVIYTSP 128
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
LKALSNQK+RE + F D VGL+TGD ++ A L+MTTEILR MLY+ +
Sbjct: 129 LKALSNQKYRELSQEFSD--VGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEV------ 180
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L +V ++ DE+HY+ D RG VWEE II+ P ++++ LSAT++NA E A WI +H +
Sbjct: 181 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPTAIKMVFLSATMSNATEFAEWICNLHKQ 240
Query: 331 -TELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ + RP PL Y F + L L+ ++ + N+++L S K + GS
Sbjct: 241 PCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENEQFRED---NFVKLQDSFTKQKQGVGS 297
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
+ NS+ + NA S + +++ + R P I F
Sbjct: 298 KSVNSKTSGRIAKGG---------------NASGGSDIFKIVKMIME---RKFQPVIIFS 339
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVA 503
F+RR C+ + + + E VE + + + R PAI+ +L +G+A
Sbjct: 340 FSRRECEQHAMSMSKLDFNTKEEKDVVEQVFRNAVLCLNEEDRNLPAIELMLPLLQRGIA 399
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K +E LFQ GLVK +FATET A G+NMPA+T V +++ K +
Sbjct: 400 VHHSGLLPIIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRFIG 459
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
S E QM+GRAGRRG D+RG +++ ++ PLVS F SY +LNL
Sbjct: 460 SGEYIQMSGRAGRRGKDDRGICIIMIDEQMEMNTLRDMVLGKPAPLVSTFRLSYYSILNL 519
Query: 624 LAGAK 628
++ A+
Sbjct: 520 MSRAE 524
>gi|408388817|gb|EKJ68496.1| hypothetical protein FPSE_11504 [Fusarium pseudograminearum CS3096]
Length = 1094
Score = 280 bits (716), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 188/552 (34%), Positives = 288/552 (52%), Gaps = 57/552 (10%)
Query: 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209
++ A ++F++D FQ S+ + R S++VSA TS+GKT++AE A + +R+ YT+
Sbjct: 150 EQPARTWNFKLDPFQSLSVASIEREESILVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTS 209
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSES 269
P+KALSNQK+R+F FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 210 PIKALSNQKYRDFEAIFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR--- 264
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG 329
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH
Sbjct: 265 ---EVAWVVFDEIHYMRDKTRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHH 321
Query: 330 KT-ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
+ ++ + RP PL YF + + ++DEK + N + + N + E
Sbjct: 322 QACHVVYTDFRPTPLQNYFFPAGGSGARLIVDEKS-NFNEQ-NFNKVMQEVEE------- 372
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
+K AD N N N A S + ++I + P I
Sbjct: 373 -------KKGADPNDPNARQKGKGKNKKTNKGGADNGSDIAKIIRMTI---KKKFNPVIV 422
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KG 501
F F++R C+ + + D+ E + V + RE P I LL +G
Sbjct: 423 FNFSKRECENMAMNISSLSFNDDSEKAMVRKVFHNAIESLSEQDRELPQIINLLPLLERG 482
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+ HH+G LPI K IE LFQ L+KV+FATET + G+NMPA+T V + ++K R
Sbjct: 483 IGVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVKRRP 542
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
LTS+E QMAGRAGRRG+D RG V+++ + +++ + L S F Y M+L
Sbjct: 543 LTSSEYIQMAGRAGRRGLDARGIVIMMIDDKLEPDTAKEIVTGHQDRLNSAFYLGYNMIL 602
Query: 622 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKE 681
NLL ++ +S E ++E+ F + + + + + EL +Q+E
Sbjct: 603 NLL---RIEAISPEF-----------------MLERCFHQFQNAASVPSLEKELMSLQQE 642
Query: 682 TDVLTSEISDDA 693
D T I+D++
Sbjct: 643 RDSTT--IADES 652
>gi|260811728|ref|XP_002600574.1| hypothetical protein BRAFLDRAFT_205455 [Branchiostoma floridae]
gi|229285861|gb|EEN56586.1| hypothetical protein BRAFLDRAFT_205455 [Branchiostoma floridae]
Length = 961
Score = 280 bits (716), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 178/481 (37%), Positives = 261/481 (54%), Gaps = 48/481 (9%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A +Y F +D FQ+ ++ SV+VSA TS+GKT++AE A ++ +++R+ YTTP+K
Sbjct: 49 AKVYPFVLDPFQKEALRCLESNQSVLVSAHTSAGKTVVAEYAIAMSLRDKQRVIYTTPIK 108
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE E F D VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 109 ALSNQKYRELYEEFQD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSELMR------ 160
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V +V DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H +
Sbjct: 161 EVAWVVFDEIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICWLHKQPC 220
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RPVPL Y + L ++DE G R+ + N + + +DGG
Sbjct: 221 HVVYTDYRPVPLQHYIFPAGGDGLHLVVDETGSF--REDNFN------TAMAVLRDGGDN 272
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
+ R + + +K NA + ++ + R+ P I F F
Sbjct: 273 SKGDR-------------WSKKGFTKGPSNAFKIVKM---------IMERNFAPVIAFSF 310
Query: 450 NRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVA 503
+++ C+A A+Q + D N +E ++ E E+ L + + P ++ +L +G+
Sbjct: 311 SKKECEAYALQMSKLDFNTDEEKKLVE-EVFFNAIDCLSDEDKKLPQVEHVLPLLKRGIG 369
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH G LPI K IE LF GL+K +FATET + G+NMPART + +S K ++
Sbjct: 370 IHHGGLLPILKETIEILFSEGLIKALFATETFSMGLNMPARTVLFTSARKFDGKDFRWVS 429
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
S E QM+GRAGRRG+D RG V+L+ G LL +PL S F +Y MVLNL
Sbjct: 430 SGEYIQMSGRAGRRGLDERGIVILMIDEKMGPSVGKNLLKGAPDPLNSAFHLTYNMVLNL 489
Query: 624 L 624
L
Sbjct: 490 L 490
>gi|413953570|gb|AFW86219.1| hypothetical protein ZEAMMB73_184778 [Zea mays]
Length = 1004
Score = 280 bits (716), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 182/529 (34%), Positives = 271/529 (51%), Gaps = 58/529 (10%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
D E A + F++D FQ +I G SV+VSA TS+GKT++A A ++ NQ+R+ Y
Sbjct: 71 DASEPAKKFPFQLDPFQAEAIRCLDNGESVMVSAHTSAGKTVVALYAIAMSLRNQQRVIY 130
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
T+P+KALSNQK+REF+E F D VGL+TGD I A L+MTTEI R+M Y+ ++
Sbjct: 131 TSPIKALSNQKYREFKEEFSD--VGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEVMR- 187
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG-- 325
+V ++ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+
Sbjct: 188 -----EVAWVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKV 242
Query: 326 --QIHGK-TELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 380
Q+H + ++ + RP PL Y S L ++DEKGK + Q + + +
Sbjct: 243 CSQVHKQPCHIVYTDYRPTPLQHYVFPSGGDGLYLVVDEKGKFRE-----DSFQKALNAL 297
Query: 381 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 440
P D ++ N ++ + ++ S S+ + + + R
Sbjct: 298 VPASDSAKKKENGKRQ-------------KFTMAGTS------SEESDIFKMVKMIIQRQ 338
Query: 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL 499
P I F F++R C+ + +L ++ E + +E +L D + P + +L
Sbjct: 339 YDPVILFSFSKRECEFLAMQMAKMDLNEDDEKANIETIFWSAMDMLSDDDKKLPQVSNML 398
Query: 500 ----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
+G+ HH+G LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K
Sbjct: 399 PLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFD 458
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 615
L+S E QM+GRAGRRGID RG +L+ +L + L S F
Sbjct: 459 GDRFRWLSSGEYIQMSGRAGRRGIDLRGICILMVDEKMEPSTAKMMLKGSADSLNSAFHL 518
Query: 616 SYGMVLNLLAGAKVMHLSNESDDMKAL-------QAGRSLEEARKLVEQ 657
SY M+LN + S + D K L QA RSL + K +++
Sbjct: 519 SYNMLLNQMR-------SEDGDPEKLLRHSFYQFQADRSLPDLEKQIKE 560
>gi|326502430|dbj|BAJ95278.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1004
Score = 280 bits (716), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 173/486 (35%), Positives = 258/486 (53%), Gaps = 37/486 (7%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
++A Y F++D FQ SI R SV+VSA TS+GKT +AE A + +++R+ YT+P
Sbjct: 76 KMAKTYPFQLDPFQSVSIACLERNESVLVSAHTSAGKTAVAEYAIAMSFRDKQRVIYTSP 135
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
LKALSNQK+RE + F D VGL+TGD + A L+MTTEILR MLY+ ++
Sbjct: 136 LKALSNQKYRELSQEFSD--VGLMTGDVTLQPNATCLVMTTEILRAMLYRGSEVIK---- 189
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V ++ DE+HY+ D RG VWEE I++ P ++++ LSAT++NA E A WI +H +
Sbjct: 190 --EVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQ 247
Query: 331 -TELITSSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL Y + L ++DE G+ N+L+L + K
Sbjct: 248 PCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFRED----NFLKLQDTFAK-----Q 298
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+ + +K ++ + G NA S + +++ + R P I F
Sbjct: 299 PSQLDGKKSGGPKASGRIAKGG---------NASGTSDIYRIVKMIME---RKFQPVIIF 346
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGV 502
F+RR C+ + + E E +E + + R PAI+ +L +G+
Sbjct: 347 SFSRRECEHHAMSMSKLDFNTEEEKDSIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGI 406
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
A HH+G LPI K +E LFQ GLVK +FATET A G+NMPA+T V +S+ K +
Sbjct: 407 AVHHSGLLPIIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRFI 466
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
S E QM+GRAGRRG D RG V++ ++ PL+S F SY +LN
Sbjct: 467 GSGEYIQMSGRAGRRGKDERGICVIMIDEKMEMSVIKDMVLGKPAPLISTFRLSYYTILN 526
Query: 623 LLAGAK 628
LL+ A+
Sbjct: 527 LLSRAE 532
>gi|299688859|pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
gi|299688860|pdb|2XGJ|B Chain B, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
Length = 1010
Score = 280 bits (716), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 256/480 (53%), Gaps = 36/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I RG SV+VSA TS+GKT++AE A ++ N++R+ YT+P+K
Sbjct: 80 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 139
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 140 ALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 191
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH +
Sbjct: 192 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 251
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ ++ RP PL Y + + ++DEK N+ + S D
Sbjct: 252 HIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREE----NFQKAMASISNQIGD---- 303
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
D NS + GQ S + + +++ +W + P I F F
Sbjct: 304 --------DPNSTDSRGKKGQ-TYKGGSAKGDAKGDIYKIVKMIWKKKYN---PVIVFSF 351
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + + E + L P+ RE P IK +L +G+
Sbjct: 352 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 411
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 412 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 471
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 472 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 531
>gi|58266562|ref|XP_570437.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110500|ref|XP_776077.1| hypothetical protein CNBD1250 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258745|gb|EAL21430.1| hypothetical protein CNBD1250 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226670|gb|AAW43130.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1068
Score = 280 bits (715), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 203/609 (33%), Positives = 308/609 (50%), Gaps = 52/609 (8%)
Query: 41 PLLSSNSIQFQASYKSPK------SFFPTEHKLTDADEAADEYDDDIDDDDDEEAADEY- 93
P LS++S+ + +S K S P++ D ++ AD+ D +++ D + D
Sbjct: 9 PPLSASSLTVKHKKRSSKDKSGTPSPRPSKTARLDQEDGADDPMDVLEEGKDGRSRDPME 68
Query: 94 ---DDVSGEVSDEIQ-QSDDEFEVSSDSSPAPSWREEFKWQRVEKLCNEV---KEFG--- 143
D +V DE + Q++ E + + D + + +E K + V ++ ++V ++
Sbjct: 69 ALEDGAMPKVEDEYEVQAEREVDAAKDFADVTAPGQEAKLKLVHQVRHQVAIPPDYPYIP 128
Query: 144 -NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ 202
N+ D A Y F +D FQ S R SV+VSA TS+GKT++AE A +
Sbjct: 129 INQHKRKDPPARTYKFELDPFQFVSTSCIERNESVLVSAHTSAGKTVVAEFAIATCLKEG 188
Query: 203 RRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSV 262
RR+ YT+P+KALSNQKFREF ETFGD VGL+TGD IN EA L+MTTEILR+MLY+
Sbjct: 189 RRVVYTSPIKALSNQKFREFTETFGD--VGLMTGDVTINPEASCLVMTTEILRSMLYRGS 246
Query: 263 GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAG 322
++ +V ++ DEVHY+ D RG VWEE II P V+ + LSAT+ N+ E A
Sbjct: 247 EVMR------EVAWVIFDEVHYMRDKERGVVWEETIILLPHTVRYVFLSATIPNSMEFAE 300
Query: 323 WIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 381
WI H + ++ + RP PL Y L P E + L E
Sbjct: 301 WICATHEQPCHVVYTDFRPTPLQHY------LFPAGSEG------------IYLVVDEKS 342
Query: 382 PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
++D ++ + + S G+ + K + + + + + R++
Sbjct: 343 NFRDDNFQKAMAALAQGQGEDPANPSGGKGKKGKTKKGGALKGETSDIYKIVQLIMRRNL 402
Query: 442 LPAIWFIFNRRGC-DAAVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 499
P I F F++R C D A+Q + D N DE + ++ L D + I+G+L
Sbjct: 403 NPVIIFAFSKRECEDLAMQMQKFDFNTPDEA-ATVAQVFESAIGSLSEDDKKLSQIEGIL 461
Query: 500 ----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
+G+ HH G LPI K IE LFQ GL+K +FATET + G+NMPA+T V +S+ K
Sbjct: 462 PLLKRGIGIHHGGLLPILKEVIEILFQEGLIKALFATETFSIGLNMPAKTVVFTSVRKFD 521
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 615
L+ E QM+GRAGRRG+D RG V+++ E ++ + L S F
Sbjct: 522 GKDFRNLSGGEYIQMSGRAGRRGLDARGIVIMMCDEKIEPEAAKGMVKGQADRLDSAFHL 581
Query: 616 SYGMVLNLL 624
Y M++NL+
Sbjct: 582 GYNMIINLM 590
>gi|307201503|gb|EFN81266.1| Helicase SKI2W [Harpegnathos saltator]
Length = 1209
Score = 280 bits (715), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 179/487 (36%), Positives = 262/487 (53%), Gaps = 51/487 (10%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V + A +++ +D FQ+ +I +V V+A TS+GKT +AE A + + R+ YT
Sbjct: 273 VPDPAITFEYELDTFQKQAILKLEENCNVFVAAHTSAGKTTVAEYAIALSQKHMTRVIYT 332
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQK+R+F++ + +VGLLTGD IN+ A LIMTTEIL++MLY +
Sbjct: 333 SPIKALSNQKYRDFKKKY--ESVGLLTGDLQINQNASCLIMTTEILQSMLY------CAS 384
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L D++ ++ DEVHY+++ RG VWEEI+I P+ + I+ LSATV N A W+G+I
Sbjct: 385 DVLRDLEFVIFDEVHYINNEDRGHVWEEIVILLPQTINIVMLSATVPNPVVFADWVGRIK 444
Query: 329 G-KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
K +I++ +RP+PL Y T T GK + K +L L DG
Sbjct: 445 KRKMYVISTLKRPIPLLHYLYTGT--------DGKTKDDK----FLVL---------DGN 483
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-----HLRSRDML 442
+ N++N + SKN+ + R P+ + LW HL S DML
Sbjct: 484 GQFLLDGWFKATNASN--------KKSKNAKDC--RRMTPKQEEVLWRAFISHLNSNDML 533
Query: 443 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI----KG 497
P + F +R+ CD L + +L E +V + + + RE P + +
Sbjct: 534 PVVVFTLSRKRCDVNAATLRNLDLTTAREKHQVHVFFQNNIKNLKGSDRELPQVLMMQEL 593
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
L KGV HH+G LPI + +E LFQ G+VK++FATET A G+NMPART V S+ K +
Sbjct: 594 LQKGVGIHHSGILPILREIVEMLFQSGVVKLLFATETFAMGVNMPARTVVFDSIRKFDGN 653
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHV-VLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
L E QMAGRAGRRG D G V V+ + + ++ G + L S+F +
Sbjct: 654 QFRTLFPTEYIQMAGRAGRRGHDTTGTVMVMCRNEVPHFNDLKPMMCGGAQTLESKFKVT 713
Query: 617 YGMVLNL 623
Y M+LNL
Sbjct: 714 YSMLLNL 720
Score = 43.9 bits (102), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 86/177 (48%), Gaps = 13/177 (7%)
Query: 961 RLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENEL 1020
+L+++ ++L ++ + + +++ + ++ R +D + +V L A G NEL
Sbjct: 999 QLESKMRQLQLKLSDEGMTLYPDYMNMLTLLKHLRYIDSDERV--ALKGRVALQMGSNEL 1056
Query: 1021 WLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTV--INVINVLDE 1078
+ ++ +L L+PA++AA+ ++L+ + + I EP T+ IN NV+ E
Sbjct: 1057 LITELILKNVLTVLQPAEIAALLSALI--------FHQRTDI-EPQLTLNLINGRNVMKE 1107
Query: 1079 HRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRR 1135
+ L++ H + L+ +V WA ++ E+M + +G + R +++
Sbjct: 1108 VHAELEALEQSHELSTLSPLNCGLMEVVYEWAQAKSFAEIMKKTDVQEGIIVRCIQQ 1164
>gi|147792354|emb|CAN65767.1| hypothetical protein VITISV_043093 [Vitis vinifera]
Length = 836
Score = 280 bits (715), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 174/485 (35%), Positives = 261/485 (53%), Gaps = 36/485 (7%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
++A Y F +D FQ+ S+ R SV+VSA TS+GKT +AE + +++R+ YT+P
Sbjct: 107 KMAKTYPFTLDPFQQVSVACLERNESVLVSAHTSAGKTAVAEYSIAMAFRDKQRVIYTSP 166
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
LKALSNQK+RE + F D VGL+TGD ++ A L+MTTEILR MLY+ SE
Sbjct: 167 LKALSNQKYRELSQEFSD--VGLMTGDVTLSPNASCLVMTTEILRGMLYRG-----SEV- 218
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
L +V ++ DE+HY+ D RG VWEE II+ P ++++ LSAT++NA E A WI +H +
Sbjct: 219 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPTAIKMVFLSATMSNATEFAEWICNLHKQ 278
Query: 331 -TELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
++ + RP PL Y F + L L+ ++ + N+++L S K + GS
Sbjct: 279 PCHVVYTDFRPTPLQHYVFPIXGSGLYLVVDENEQFRED---NFVKLQDSFTKQKQGVGS 335
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
+ NS+ + NA S + +++ + R P I F
Sbjct: 336 KSVNSKTSGRIAKGG---------------NASGGSDIFKIVKMIME---RKFQPVIIFS 377
Query: 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVA 503
F+RR C+ + + + E VE + + + R PAI+ +L +G+A
Sbjct: 378 FSRRECEQHAMSMSKLDFNTKEEKDVVEQVFRNAVLCLNEEDRNLPAIELMLPLLQRGIA 437
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH+G LPI K +E LFQ GLVK +FATET A G+NMPA+T V +++ K +
Sbjct: 438 VHHSGLLPIIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRFIG 497
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 623
S E QM+GRAGRRG D+RG +++ ++ PLVS F SY +LNL
Sbjct: 498 SGEYIQMSGRAGRRGKDDRGICIIMIDEQMEMNTLRDMVLGKPAPLVSTFRLSYYSILNL 557
Query: 624 LAGAK 628
++ A+
Sbjct: 558 MSRAE 562
>gi|19114484|ref|NP_593572.1| TRAMP complex ATP-dependent RNA helicase (predicted)
[Schizosaccharomyces pombe 972h-]
gi|3219961|sp|O13799.1|YE02_SCHPO RecName: Full=Uncharacterized helicase C17H9.02
gi|2330709|emb|CAB11211.1| TRAMP complex ATP-dependent RNA helicase (predicted)
[Schizosaccharomyces pombe]
Length = 1030
Score = 280 bits (715), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 183/500 (36%), Positives = 268/500 (53%), Gaps = 70/500 (14%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
N+ I D A Y F +D FQ ++I+ R SV+VSA TS+GKT+IAE A + N++
Sbjct: 110 NKHIPSDPPAKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGKTVIAEYAIAQALKNRQ 169
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
R+ YT+P+K+LSNQK+RE FGD VGL+TGD +IN A LIMTTEILR MLY++
Sbjct: 170 RVIYTSPIKSLSNQKYRELLSEFGD--VGLMTGDVSINPSASCLIMTTEILRAMLYKNSE 227
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ + ++ ++ DEVHY+ D RG VWEE +I P ++ I LSAT+ NA + A W
Sbjct: 228 I------MHEIAWVIFDEVHYMRDKDRGVVWEETLILLPDAIRFIFLSATLPNALQFARW 281
Query: 324 IGQIHGK-TELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEV 380
I +IH + ++ + RP PL + + A + L+DEK K +V
Sbjct: 282 ISEIHKQPCHVVYTDYRPTPLQHFIYPQGADGIYMLVDEKNKFKTENF---------KKV 332
Query: 381 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 440
D +R+ N + + +++ R +I+ + R
Sbjct: 333 LEVLDHSTRQEN---------------YSKSSKKVKKSSSLER-----IINMVLSNRYD- 371
Query: 441 MLPAIWFIFNRRGCDA-AVQY-------LEDCNLLDEC------EMSEVELALKRFRILY 486
P I F F+++ C+ A Q+ E+ L+ E ++SE + L++F
Sbjct: 372 --PIIVFCFSKKECEINAHQFGKLDLNDTENKELVTEIFDSAINQLSEEDRGLRQF---- 425
Query: 487 PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
E LL+G+ HH+G LPI K +E LFQ GLV+++FATET + G+NMPART
Sbjct: 426 -----EEMRSLLLRGIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLNMPARTV 480
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH--VVLVQTPYEGAEECCKLLFA 604
+ + K + + LTS E QM+GRAGRRGID +G V+L Q+ E A C L+
Sbjct: 481 LFTKAQKFSGNNFRWLTSGEYMQMSGRAGRRGIDTKGLSIVILDQSIDEQAARC--LMNG 538
Query: 605 GVEPLVSQFTASYGMVLNLL 624
+ L S F SYGM+LNL+
Sbjct: 539 QADVLNSAFHLSYGMILNLM 558
>gi|195050120|ref|XP_001992832.1| GH13429 [Drosophila grimshawi]
gi|193899891|gb|EDV98757.1| GH13429 [Drosophila grimshawi]
Length = 1067
Score = 280 bits (715), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 175/485 (36%), Positives = 259/485 (53%), Gaps = 52/485 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ+ +I SV+VSA TS+GKT++AE A ++A ++R+ YTTP+K
Sbjct: 157 AKEYPFVLDPFQKQAILCIDNSQSVLVSAHTSAGKTVVAEYAIAKSLAAKQRVIYTTPIK 216
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFREF + F D VGL+TGD IN A LIMTTEILRNMLY+ ++
Sbjct: 217 ALSNQKFREFTDEFQD--VGLVTGDVTINPSASCLIMTTEILRNMLYRGSEVMR------ 268
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V +V DE+HY+ D RG VWEE +I P V+ + LSAT+ NA + A W+ +H +
Sbjct: 269 EVGWVVFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQFAEWVCHLHKQPC 328
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y + + ++DEKG+ + L+ + D R
Sbjct: 329 HVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQFKEDNFTTAMAVLANAGEAAKGDQKGR 388
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
+ + H +N + + + R+ P I F F
Sbjct: 389 KGGVKGHNSGQTN--------------------------IFKIVKMIMERNFAPVIIFSF 422
Query: 450 NRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVA 503
+++ C+ A+Q + D N +DE ++ + E+ +L + R P ++ +L +G+
Sbjct: 423 SKKDCEVYAMQMAKLDFNTVDEKKLVD-EVFHNAMDVLSEEDRRLPQVENVLPLLRRGIG 481
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH G LPI K IE LF GL+K +FATET A G+NMPART + ++ K ++
Sbjct: 482 IHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKDFRWIS 541
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
S E QMAGRAGRRG+D++G V+L+ +P G E ++ + L S F +Y M
Sbjct: 542 SGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPVVGRE----IVQGKADTLNSAFHLTYNM 597
Query: 620 VLNLL 624
VLNLL
Sbjct: 598 VLNLL 602
>gi|410730847|ref|XP_003980244.1| hypothetical protein NDAI_0G05850 [Naumovozyma dairenensis CBS 421]
gi|401780421|emb|CCK73568.1| hypothetical protein NDAI_0G05850 [Naumovozyma dairenensis CBS 421]
Length = 1087
Score = 280 bits (715), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 169/480 (35%), Positives = 254/480 (52%), Gaps = 36/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ +++ RG SV+VSA TS+GKT++AE A ++ ++R+ YT+P+K
Sbjct: 152 ARTYPFTLDPFQDTAVSCIDRGESVLVSAHTSAGKTVVAEYAIAQSLREKQRVIYTSPIK 211
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 212 ALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 263
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH +
Sbjct: 264 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 323
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ ++ RP PL Y + + ++DEK +S
Sbjct: 324 HIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS------------- 370
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
++ D NS N GQ + + + +++ +W + P I F F
Sbjct: 371 ---NQSGDDPNSTNSRGKKGQ-TFKGGAAKGDAKGDIYKIVKMIWKKKYN---PVIVFSF 423
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + + E + L P+ RE P IK +L +G+
Sbjct: 424 SKRDCEELALKMSKLDFNSDDEKDALSKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 483
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 484 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 543
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 544 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 603
>gi|116199875|ref|XP_001225749.1| hypothetical protein CHGG_08093 [Chaetomium globosum CBS 148.51]
gi|88179372|gb|EAQ86840.1| hypothetical protein CHGG_08093 [Chaetomium globosum CBS 148.51]
Length = 726
Score = 280 bits (715), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 180/485 (37%), Positives = 260/485 (53%), Gaps = 39/485 (8%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A Y FR+D FQ S+ + R SV+VSA TS+GKT++AE A + +R+ YT+P
Sbjct: 134 EPARTYPFRLDPFQAMSVASIERDESVLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTSP 193
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+R+F+ FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 194 IKALSNQKYRDFQADFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR---- 247
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V ++ DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH +
Sbjct: 248 --EVAWVIFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHRQ 305
Query: 331 T-ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL YF + + ++DEKG +L + +
Sbjct: 306 ACHVVYTDFRPTPLQNYFFPAGTNGIHLIVDEKGNFKENNFNLAMAAIES---------- 355
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+ AD ++ + +S + +VI + + P I F
Sbjct: 356 ---KKGSDPADWSAKQKGKGKNKKTNKGGEAPD-EKSDIAKVIKMII---KKSFQPVIVF 408
Query: 448 IFNRRGCD--AAVQYLEDCNLLDECEM--SEVELALKRFRILYPDAVREPAIKGLL---- 499
F +R C+ A + N DE M S + AL + L + P I +L
Sbjct: 409 NFAKRECEMMALKTSVMKFNAADEEAMVDSVFQNALGQ---LSDEDKNLPQISNILPLLR 465
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
KG+ HH+G LPI K IE LFQ GL+KV+FATET + G+NMPART V + ++K R
Sbjct: 466 KGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFTQVTKWDGVQR 525
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
LTS+E QMAGRAGRRG+D+RG V+++ + ++ + L S F Y M
Sbjct: 526 RPLTSSEYIQMAGRAGRRGLDDRGIVIMMIDDKLEPDVARGVVVGHQDRLNSAFHLGYNM 585
Query: 620 VLNLL 624
+LNLL
Sbjct: 586 ILNLL 590
>gi|198473097|ref|XP_001356169.2| GA17990 [Drosophila pseudoobscura pseudoobscura]
gi|198139299|gb|EAL33229.2| GA17990 [Drosophila pseudoobscura pseudoobscura]
Length = 1057
Score = 280 bits (715), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 181/510 (35%), Positives = 269/510 (52%), Gaps = 57/510 (11%)
Query: 133 EKLCNEVKEFGN-EMIDVDELASI----YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
E +EV + + E I + A I Y F +D FQR +I SV+VSA TS+GK
Sbjct: 122 ESCTHEVAAYPDQEYIPLQPFAGIPAKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAGK 181
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A ++A ++R+ YTTP+KALSNQKFREF + F D VGL+TGD IN A L
Sbjct: 182 TVVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFKD--VGLVTGDVTINPSASCL 239
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILRNMLY+ ++ +V +V DE+HY+ D RG VWEE +I P V+
Sbjct: 240 IMTTEILRNMLYRGSEIMR------EVGWVVFDEIHYMRDKERGVVWEETLILLPDNVRY 293
Query: 308 ICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF--STKTALLPLLDEKGKHM 364
+ LSAT+ NA + A W+ +H + ++ + RP PL Y + + ++DEKG+
Sbjct: 294 VFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQFK 353
Query: 365 NRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 424
+ L+ + D R+ + H +N
Sbjct: 354 EDNFTTAMAVLANAGEAGKGDQKGRKGGIKGHNSGQTN---------------------- 391
Query: 425 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRF 482
+ + + R+ P I F F+++ C+ A+Q + D N DE ++ + E+
Sbjct: 392 ----IFKIVKMIMERNFAPVIIFSFSKKDCEIFAMQMAKLDFNTADEKKLVD-EVFNNAM 446
Query: 483 RILYPDAVREPAIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 538
+L + R P ++ +L +G+ HH G LPI K IE LF GL+K +FATET A G
Sbjct: 447 DVLSDEDRRLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMG 506
Query: 539 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV----QTPYEG 594
+NMPART + ++ K ++S E QMAGRAGRRG+D++G V+L+ +P G
Sbjct: 507 LNMPARTVLFTAPRKFDGKDFRWISSGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPAVG 566
Query: 595 AEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
+ ++ +P+ S F +Y MVLNLL
Sbjct: 567 RD----IVQGKADPINSAFHLTYNMVLNLL 592
>gi|222616907|gb|EEE53039.1| hypothetical protein OsJ_35761 [Oryza sativa Japonica Group]
Length = 991
Score = 279 bits (714), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 169/478 (35%), Positives = 249/478 (52%), Gaps = 40/478 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F++D FQ +I G SV+VSA TS+GKT++A A ++ NQ+R+ YT+P+K
Sbjct: 77 AKTFPFQLDPFQAEAIRCLDNGESVMVSAHTSAGKTVVALYAIAMSLRNQQRVIYTSPIK 136
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF+E F D VGL+TGD I A L+MTTEI R+M Y+ ++
Sbjct: 137 ALSNQKYREFKEEFSD--VGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEVMR------ 188
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V I+ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H +
Sbjct: 189 EVAWIIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQPC 248
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y S L ++DEK K + Q + + P + +
Sbjct: 249 HIVYTDYRPTPLQHYVFPSGGDGLYLVVDEKSKFRE-----DSFQKGLNALVPASENDKK 303
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R N + + + + S+ + + + R P I F F
Sbjct: 304 RENGKWQKGLLTG-------------------KPSEDSDIFKMVKMIIQRQYDPVILFSF 344
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL----KGVAA 504
++R C+ + +L D+ E + +E +L D + P + +L +G+
Sbjct: 345 SKRECEFLAMQMAKMDLNDDDEKANIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGV 404
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K L+S
Sbjct: 405 HHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSS 464
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
E QM+GRAGRRGID RG +L+ +L + L S F SY M+LN
Sbjct: 465 GEYIQMSGRAGRRGIDQRGICILMVDEKMEPSTAKMILKGSADSLNSAFHLSYNMLLN 522
>gi|406860781|gb|EKD13838.1| ATP-dependent RNA helicase DOB1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1079
Score = 279 bits (714), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 189/555 (34%), Positives = 284/555 (51%), Gaps = 68/555 (12%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F +D FQ+ +I + RG SV+VSA TS+GKT++AE A ++ N +R+ YT+P+K
Sbjct: 147 ARTWPFELDPFQKVAIASIERGESVLVSAHTSAGKTVVAEYAIAQSLKNNQRVIYTSPIK 206
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+R+F FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 207 ALSNQKYRDFAADFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR------ 258
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HY+ D +RG VWEE II P +V+ + LSAT+ N+ + A WI + H +
Sbjct: 259 EVQWVIFDEIHYMRDKARGVVWEETIILLPDKVRYVFLSATIPNSMQFAEWITKTHQQPC 318
Query: 332 ELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL YF A + ++DEKG + Q + + ++ K
Sbjct: 319 HIVYTDFRPTPLQHYFFPAGADGIHLIVDEKGNFRE-----DNFQKAMATIEDQKGADP- 372
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLS------KNSINAIRRSQVPQVIDTLWHLRSRDMLP 443
AD+N+ + KN I I R + + P
Sbjct: 373 -------ADINAKQKGKGKNKKTNKGGVNDDKNDIYKIVR-----------MIMVKHYNP 414
Query: 444 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL--- 499
I F F++R C+A + DE E V L + P I+ +L
Sbjct: 415 VIVFSFSKRECEAYALKMSSLAFNDEAEKLVVTKVFNSAIESLSEEDKSLPQIQHILPLL 474
Query: 500 -KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 558
+G+ HH+G LPI K IE LFQ L+KV+FATET + G+NMPA+T V +S+ K +
Sbjct: 475 RRGIGVHHSGLLPILKETIEILFQENLIKVLFATETFSIGLNMPAKTVVFTSVEKFDGTS 534
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
LT +E QM+GRAGRRG+D RG V+++ +++ + L S F Y
Sbjct: 535 MRYLTPSEFVQMSGRAGRRGLDARGIVIMMINDKMEPATAKQIVRGEQDKLNSAFYLGYN 594
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKI 678
M+LNL+ +V +S E ++E F + S+ + + EL I
Sbjct: 595 MILNLI---RVEGISPEF-----------------MLEHCFYQFQNSSSVAGLERELVAI 634
Query: 679 QKETDVLTSEISDDA 693
Q+E D L EI+D++
Sbjct: 635 QQERDNL--EIADES 647
>gi|254578738|ref|XP_002495355.1| ZYRO0B09306p [Zygosaccharomyces rouxii]
gi|238938245|emb|CAR26422.1| ZYRO0B09306p [Zygosaccharomyces rouxii]
Length = 1065
Score = 279 bits (714), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 172/480 (35%), Positives = 255/480 (53%), Gaps = 36/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I RG SV+VSA TS+GKT++AE A ++ +++R+ YT+P+K
Sbjct: 135 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLRDKQRVIYTSPIK 194
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 195 ALSNQKYRELLADFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 246
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V +V DEVHY+ D RG VWEE II P +V + LSAT+ NA E A WI +IH +
Sbjct: 247 EVAWVVFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWICKIHVQPC 306
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y + + ++DEK +S+ + +D G+
Sbjct: 307 HIVYTDFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISS---QSGEDSGAV 363
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
+K GQ + + + +++ +W R P I F F
Sbjct: 364 DSKGKK-------------GQ-SFKGGASKGDSKGDIYKIVKMIWKRRYN---PVIIFSF 406
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + +E E + L P+ RE P I LL +G+
Sbjct: 407 SKRDCEELALKMSKLDFNNEDEKVALTKIFNNAVALLPETDRELPQIVHLLPLLKRGIGI 466
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 467 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 526
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 527 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 586
>gi|451855147|gb|EMD68439.1| hypothetical protein COCSADRAFT_178265 [Cochliobolus sativus
ND90Pr]
Length = 1060
Score = 279 bits (714), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 176/482 (36%), Positives = 261/482 (54%), Gaps = 35/482 (7%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A + F +D FQ+ SI + R SV+VSA TS+GKT++AE A + N +R+ YT+P
Sbjct: 133 EPARTWPFALDPFQQVSIASIQRNESVLVSAHTSAGKTVVAEYAIAQCLKNNQRVIYTSP 192
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+REF FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 193 IKALSNQKYREFMAEFGD--VGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR---- 246
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V +V DEVHYL D SRG VWEE II P +V+ + LSAT+ N+ + A WI + H +
Sbjct: 247 --EVAWVVFDEVHYLRDKSRGVVWEETIILLPDKVRYVFLSATIPNSMQFAEWITKTHSQ 304
Query: 331 -TELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL YF A + ++DEKG M R+ + S ++ G
Sbjct: 305 PCHVVYTDFRPTPLQHYFFPAGADGIHLVVDEKG--MFREENFQKAMSSIAD-----KAG 357
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
+ ++ + T+ G ++ + ++ V + P I F
Sbjct: 358 TDAKDFMAKRKGKGKDKKTNTGGNREQTDIYKIVKMIMV------------KSYNPVIVF 405
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGV 502
F++R C+ + DE E + V +L + + P I+ +L +GV
Sbjct: 406 SFSKRECENYALAMSSLAFNDESEKAMVTKVFNSAIEMLSEEDRQLPQIQNILPLLRRGV 465
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K + +
Sbjct: 466 GVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVSQRWV 525
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
T +E QM+GRAGRRG+D+RG V+++ +++ + L S F Y M+LN
Sbjct: 526 TPSEFIQMSGRAGRRGLDDRGIVIMMIDEQMEPAVAKEIVRGQQDNLNSAFHLGYNMILN 585
Query: 623 LL 624
L+
Sbjct: 586 LM 587
>gi|427785387|gb|JAA58145.1| Putative cytoplasmic exosomal rna helicase ski2 dead-box
superfamily [Rhipicephalus pulchellus]
Length = 1031
Score = 279 bits (714), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 179/485 (36%), Positives = 253/485 (52%), Gaps = 60/485 (12%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
Y F +D FQ+ +I SV+VSA TS+GKT++AE A ++R+ YTTP+KALS
Sbjct: 121 YPFILDPFQQEAILCLEHNQSVLVSAHTSAGKTVVAEYAISLAFQEKQRVIYTTPIKALS 180
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQKFREF + F D VGL+TGD IN A LIMTTEILR+MLY+ ++ +V
Sbjct: 181 NQKFREFTDDFTD--VGLMTGDVTINPSASCLIMTTEILRSMLYRGSEIMR------EVG 232
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
++ DE+HY+ D RG VWEE II P V+ + LSAT+ NA + A WI +H + ++
Sbjct: 233 WVIFDEIHYMRDKERGVVWEETIILLPDNVRYVFLSATIPNAKQFAEWICHLHKQPCHVV 292
Query: 335 TSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
+ RPVPL Y + + L ++DE G K + L + D + R
Sbjct: 293 YTEYRPVPLQHYIFPAGGSGLYLVVDESGNFKEDKFNEAMALLQNAGDAAKGDSALKGRK 352
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
+ N IV + RD P I F F+++
Sbjct: 353 GGFKGESNCYKIVKM----------------------------IMERDYAPVIVFSFSKK 384
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFR----ILYPDAVREPAIKGLL----KGVAA 504
C+A Y LD E +L ++ F+ L + + P ++ +L +G+A
Sbjct: 385 ECEA---YATQIARLDLTTFKEKKLVMEVFQNAMDSLSEEDQKLPQVEQVLPLLKRGIAV 441
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LF GLVK +FATET A G+NMPART + ++ K +TS
Sbjct: 442 HHSGLLPILKETIEILFAEGLVKALFATETFAMGLNMPARTVLFTNARKFDGKDFRWVTS 501
Query: 565 NELFQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGV-EPLVSQFTASYGM 619
E QM+GRAGRRG+D+RG V+L+ +P G K + G+ +P+ S F +Y M
Sbjct: 502 GEYIQMSGRAGRRGLDDRGIVILMVDEKMSPAAG-----KDIVKGLPDPINSAFHLTYNM 556
Query: 620 VLNLL 624
VLNL+
Sbjct: 557 VLNLM 561
>gi|17542826|ref|NP_501757.1| Protein MTR-4 [Caenorhabditis elegans]
gi|2495152|sp|Q23223.1|MTR4_CAEEL RecName: Full=mRNA transport homolog 4; AltName:
Full=Uncharacterized helicase W08D2.7
gi|3880559|emb|CAA94235.1| Protein MTR-4 [Caenorhabditis elegans]
Length = 1026
Score = 279 bits (714), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 178/482 (36%), Positives = 257/482 (53%), Gaps = 45/482 (9%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A Y F++D FQ+ +I SV+VSA TS+GKT++A A + ++R+ YT+P
Sbjct: 117 EPAKYYPFQLDAFQKQAILCIDNNQSVLVSAHTSAGKTVVATYAIAKCLREKQRVIYTSP 176
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+RE E F D VGL+TGD +N +A L+MTTEILR+MLY+ ++
Sbjct: 177 IKALSNQKYRELEEEFKD--VGLMTGDVTLNPDASCLVMTTEILRSMLYRGSEIMK---- 230
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V +V DE+HY+ D RG VWEE II K ++ LSAT+ NA + A W+ I +
Sbjct: 231 --EVGWVVYDEIHYMRDKERGVVWEETIILMSKNIKQAFLSATIPNARQFAQWVASIKQQ 288
Query: 331 -TELITSSRRPVPLT-WYFST-KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL W + + +++ KG+ K L+T+ G
Sbjct: 289 PVNVVYTDYRPTPLQHWIYPVGGEGMYEVVNVKGEFREDKFRDAMSGLATA-------GD 341
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
S S N + G Q N + IR + S D L I F
Sbjct: 342 S----------AGSFNKRRTGGGTQGDSNVLKIIR------------SVASNDGLNCIVF 379
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGV 502
F+R+ C++ L+D + + E V+ + L P+ + P I +L +G+
Sbjct: 380 SFSRKECESYAISLKDMDFNKDHEKGMVKSVYESAIAQLSPEDQKLPQILNILPLLRRGI 439
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH+G +PI K IE LF GLVKV+FATET + G+NMPART V +S K S +
Sbjct: 440 GVHHSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKFDGSDNRYI 499
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
TS E QMAGRAGRRG D+RG V+L+ A++ +++ +PL SQF +Y MVLN
Sbjct: 500 TSGEYIQMAGRAGRRGKDDRGTVILMVDSAMSADDAKQIIKGATDPLNSQFRLTYNMVLN 559
Query: 623 LL 624
L+
Sbjct: 560 LM 561
>gi|308799155|ref|XP_003074358.1| putative Helicase SKI2W (ISS) [Ostreococcus tauri]
gi|116000529|emb|CAL50209.1| putative Helicase SKI2W (ISS) [Ostreococcus tauri]
Length = 1701
Score = 279 bits (714), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 185/505 (36%), Positives = 261/505 (51%), Gaps = 41/505 (8%)
Query: 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207
+V E A + F +D+FQ+ +I + +V V+A TS+GKT++AE A + R Y
Sbjct: 678 EVPEPAHDFPFELDEFQKEAIVHLEKSENVFVAAHTSAGKTVVAEYAFALATKHCTRAIY 737
Query: 208 TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSS 267
T+P+K +SNQKFR+F F +VGLLTGD I EA LIMTTEILR+MLY+ ++
Sbjct: 738 TSPIKTISNQKFRDFGSKF---DVGLLTGDVQIRPEAACLIMTTEILRSMLYRGADLIR- 793
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327
DV+ ++ DEVHY++D RG VWEE+II P V +I LSATV N E A W+G+
Sbjct: 794 -----DVEWVIFDEVHYVNDAERGVVWEEVIIMLPAHVGLILLSATVPNVFEFADWVGRT 848
Query: 328 HGKTELITSS-RRPVPL--TWYFSTKT-----------ALLP----LLDE--KGKHMNRK 367
K +TS+ +RPVPL YF A LP + E K K + K
Sbjct: 849 KRKKIFVTSTKKRPVPLEHCIYFGGDKEKDFYKVGEHEAFLPSGYKIASEAFKKKQLGTK 908
Query: 368 LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 427
+ + + + GG + + + + S + NA R +
Sbjct: 909 AATGTPANAQAAKQVAGRGGRGVTQPGRGGRAGGRSGTPNVSAGRGSSSGPNAGRDKNM- 967
Query: 428 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF--RIL 485
++ + +L RD+LP + F F+++ CD V L +L E E+ + +R R+
Sbjct: 968 -WVELIRNLERRDLLPMVIFAFSKKRCDTLVDSLTSMDLTSSSEKHEIHIFCERALSRLS 1026
Query: 486 YPDAVREPAIKG---LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 542
PD ++ L +G+ HHAG LPI K +E LF RGL+KV++ TET A G+N P
Sbjct: 1027 APDRKLPQVLRVRELLRRGLGVHHAGLLPIVKEIVEMLFCRGLLKVLYCTETFAMGVNAP 1086
Query: 543 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECC 599
AR SL K L + E QMAGRAGRRG+D G V+L P E E
Sbjct: 1087 ARCVCFQSLRKHDGQDFRGLLTGEYTQMAGRAGRRGLDTVGTVILAAWDNFPQE--LELR 1144
Query: 600 KLLFAGVEPLVSQFTASYGMVLNLL 624
+LL L SQF +YGM+LNL+
Sbjct: 1145 QLLSGQATKLQSQFRLTYGMILNLM 1169
>gi|380491796|emb|CCF35066.1| DSHCT domain-containing protein [Colletotrichum higginsianum]
Length = 1110
Score = 279 bits (713), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 169/484 (34%), Positives = 264/484 (54%), Gaps = 37/484 (7%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A Y+F++D FQ S+ + R SV+VSA TS+GKT++AE A + +R+ YT+P
Sbjct: 163 EPARKYNFKLDPFQSLSVASIEREESVLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTSP 222
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+R+F FGD VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 223 IKALSNQKYRDFEALFGD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMR---- 276
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH +
Sbjct: 277 --EVAWVVFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHHQ 334
Query: 331 T-ELITSSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKD 385
++ + RP PL YF + + + ++DEKG + N + ++ ++ +
Sbjct: 335 ACHVVYTDFRPTPLQNYFFPAGGSGIFLVVDEKGVFREGNFQKTMALIEAGKGQDPSNAS 394
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
+ + ++K Q K A ++ + +++ + + P I
Sbjct: 395 ASWKGKGAKK----------------QTQKGGAAADMKADISKIVRMIMQ---KSFHPTI 435
Query: 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----K 500
F F+++ + + ++ E + V+ +A RE P I+ LL K
Sbjct: 436 IFNFSKKEVENLALQISHFQFNNDSEQAMVKTVFNNAIQSLSEADRELPQIQNLLPLLQK 495
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G+ HH+G LPI K IE LFQ L+KV+ ATET + G+NMPA+T V + ++K + R
Sbjct: 496 GIGVHHSGLLPILKETIEILFQESLIKVLVATETFSIGLNMPAKTVVFTQVTKWDGTQRR 555
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
LT +E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+
Sbjct: 556 PLTPSEYIQMSGRAGRRGLDSRGIVIMMIDDKMEPDTARAIVVGEQDRLNSAFYLGYNMI 615
Query: 621 LNLL 624
LNLL
Sbjct: 616 LNLL 619
>gi|158298455|ref|XP_318627.4| AGAP009600-PA [Anopheles gambiae str. PEST]
gi|157013889|gb|EAA14456.4| AGAP009600-PA [Anopheles gambiae str. PEST]
Length = 1036
Score = 279 bits (713), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 174/486 (35%), Positives = 256/486 (52%), Gaps = 54/486 (11%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ+ +I SV+VSA TS+GKT++AE A ++A+++R+ YTTP+K
Sbjct: 125 AKEYAFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIAKSLADKQRVIYTTPIK 184
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF E F D VGL+TGD IN A LIMTTEILRNMLY+ ++
Sbjct: 185 ALSNQKYREFHEEFKD--VGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMR------ 236
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HY+ D RG VWEE +I P V + LSAT+ NA + A W+ +H +
Sbjct: 237 EVGWVIFDEIHYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCHLHKQPC 296
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL Y + + ++DE+G K N ++N LQ + K + G
Sbjct: 297 HVVYTDYRPTPLQHYLFPAGGDGIHLVVDERGQFKEDNFNTAMNVLQTAGEAAKGDQKG- 355
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
R+ K ++ NI + + R P I F
Sbjct: 356 --RKGGLKASNAGETNI-------------------------FKIVKMIMERSFAPVIIF 388
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLL----KGV 502
F+++ C+ + + E V E+ +L + + P ++ +L +G+
Sbjct: 389 SFSKKDCEVYAMQMAKLDFNSSTEKKLVDEVFNNAMDVLTEEDRQLPQVENVLPLLRRGI 448
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH G LPI K IE LF GL+K +FATET A G+NMPART + +S K +
Sbjct: 449 GIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTSPRKFDGKDFRWV 508
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
TS E QM+GRAGRRG+D++G V+L+ +P G + ++ +P+ S F +Y
Sbjct: 509 TSGEYIQMSGRAGRRGLDDKGIVILMIDEAVSPAVGKD----IVQGRADPINSAFHLTYN 564
Query: 619 MVLNLL 624
MVLNLL
Sbjct: 565 MVLNLL 570
>gi|195579445|ref|XP_002079572.1| GD24019 [Drosophila simulans]
gi|194191581|gb|EDX05157.1| GD24019 [Drosophila simulans]
Length = 1051
Score = 279 bits (713), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 179/485 (36%), Positives = 262/485 (54%), Gaps = 52/485 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQR +I SV+VSA TS+GKT++AE A ++A ++R+ YTTP+K
Sbjct: 141 AKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAGKTVVAEYAIAKSLAAKQRVIYTTPIK 200
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFREF E F D VGL+TGD IN A LIMTTEILRNMLY+ ++
Sbjct: 201 ALSNQKFREFTEEFKD--VGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMR------ 252
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V +V DE+HY+ D RG VWEE +I P V+ + LSAT+ NA + A W+ +H +
Sbjct: 253 EVGWVVFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQFAEWVCHLHKQPC 312
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y + + ++DEKG+ + L+ + + G
Sbjct: 313 HVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQFKEDNFTTAMAVLANA-----GEAGKG 367
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
+ R N T+ GQ + K + + R+ P I F F
Sbjct: 368 DQKGR-----NGGIKGTNAGQTNIFK----------------IVKMIMERNFAPVIIFSF 406
Query: 450 NRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVA 503
+++ C+ A+Q + D N DE ++ + E+ +L + R P ++ +L +G+
Sbjct: 407 SKKDCEIYAMQMAKLDFNTPDEKKLVD-EVFNNAMDVLTEEDRRLPQVENVLPLLRRGIG 465
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH G LPI K IE LF GL+K +FATET A G+NMPART + ++ K ++
Sbjct: 466 IHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKNFRWIS 525
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
S E QMAGRAGRRG+D++G V+L+ +P G + ++ +P+ S F +Y M
Sbjct: 526 SGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPAVGRD----IVQGKADPINSAFHLTYNM 581
Query: 620 VLNLL 624
VLNLL
Sbjct: 582 VLNLL 586
>gi|156844001|ref|XP_001645065.1| hypothetical protein Kpol_1035p20 [Vanderwaltozyma polyspora DSM
70294]
gi|156115721|gb|EDO17207.1| hypothetical protein Kpol_1035p20 [Vanderwaltozyma polyspora DSM
70294]
Length = 1077
Score = 279 bits (713), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 167/480 (34%), Positives = 251/480 (52%), Gaps = 36/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I RG SV+VSA TS+GKT++AE A ++ ++R+ YT+P+K
Sbjct: 147 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLREKQRVIYTSPIK 206
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 207 ALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 258
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P +V+ + LSAT+ N+ E A WI +IH +
Sbjct: 259 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNSMEFAEWICKIHSQPC 318
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y + + ++DEK ++ S SR
Sbjct: 319 HIVYTDFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASITNSTGDDPNSADSR 378
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
+N + S + + +++ +W + P I F F
Sbjct: 379 GKNGK-----------------SFKGGSSKGDAKGDIYKIVKMIWKKKYN---PVIVFSF 418
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + + E + L P+ RE P IK +L +G+
Sbjct: 419 SKRDCEELALKMSKLDFNSDDEKDALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 478
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 479 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKQFRWVSG 538
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 539 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 598
>gi|156553729|ref|XP_001600961.1| PREDICTED: superkiller viralicidic activity 2-like 2-like isoform 1
[Nasonia vitripennis]
gi|345497584|ref|XP_003428027.1| PREDICTED: superkiller viralicidic activity 2-like 2-like isoform 2
[Nasonia vitripennis]
Length = 1001
Score = 279 bits (713), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 177/487 (36%), Positives = 260/487 (53%), Gaps = 58/487 (11%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ+ +I SV+VSA TS+GKT++AE A ++ +++R+ YTTP+K
Sbjct: 96 AKEYKFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIK 155
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF E F D VGL+TGD IN A ILIMTTEILRNMLY+ ++
Sbjct: 156 ALSNQKYREFYEEFKD--VGLVTGDVTINPTASILIMTTEILRNMLYRGSEVMR------ 207
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HY+ D RG VWEE +I P V + LSAT+ NA + A W+ +H +
Sbjct: 208 EVGWVIFDEIHYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVAHLHHQPC 267
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKG--KHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL Y + ++DE G K N ++ LQ ++ G
Sbjct: 268 HVVYTDYRPTPLQHYIFPVGGDGIHLVVDEHGQFKEDNFNRAMACLQGDAAK------GD 321
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
++ R H T+ GQ + K + + R+ P I F
Sbjct: 322 TKGRKGGMHK--------TNAGQTNIFK----------------VVKMIMERNFAPVIIF 357
Query: 448 IFNRRGCDAAVQYLE--DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KG 501
F+++ C+ L D N +E ++ + E+ +L D + P ++ +L +G
Sbjct: 358 SFSKKDCEVYAMQLAKLDLNTAEEKKLVD-EVFNNAMDVLNEDDRKLPQVENVLPLLRRG 416
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+ HH G LPI K IE LF GL+K +FATET A G+NMPART + ++ K
Sbjct: 417 IGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKDFRW 476
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASY 617
+TS E QM+GRAGRRG+D++G V+L+ +P G E ++ +P+ S F +Y
Sbjct: 477 ITSGEYIQMSGRAGRRGLDDKGIVILMIDEQVSPSVGKE----IVQGKADPINSAFHLTY 532
Query: 618 GMVLNLL 624
MVLNLL
Sbjct: 533 NMVLNLL 539
>gi|164658239|ref|XP_001730245.1| hypothetical protein MGL_2627 [Malassezia globosa CBS 7966]
gi|159104140|gb|EDP43031.1| hypothetical protein MGL_2627 [Malassezia globosa CBS 7966]
Length = 1046
Score = 279 bits (713), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 183/481 (38%), Positives = 264/481 (54%), Gaps = 45/481 (9%)
Query: 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215
+ F +D FQR+S+ R SV+VSA TS+GKT++AE A + + +R+ YT+P+KALS
Sbjct: 116 WPFELDPFQRTSVYCIERSESVLVSAHTSAGKTIVAEYAIAQALRDGQRVVYTSPIKALS 175
Query: 216 NQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
NQK+REF FGD VGL+TGD IN A L+MTTEILR+MLY+ ++ +V
Sbjct: 176 NQKYREFSAEFGD--VGLMTGDVTINPSASCLVMTTEILRSMLYRGSEIMR------EVA 227
Query: 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELI 334
+V DE+HY+ D RG VWEE II P++V + LSAT+ NA + A WI IH + ++
Sbjct: 228 WVVFDEIHYMRDKERGVVWEETIILLPRKVHYVFLSATIPNAMQFAEWIAHIHAQPCHVV 287
Query: 335 TSSRRPVPLTWYFSTK--TALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392
+ RP PL Y + + ++DEKG + R+ + + SEV+ +
Sbjct: 288 YTDFRPTPLQHYLFPEGGQGIHLVVDEKG--VFREDNFQKAMGALSEVRGDDPASTESGK 345
Query: 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452
RK GQ SK S + ++I + L+ + P I F F++R
Sbjct: 346 GRK-------------GQ---SKKGGGTSGPSDIYKIIKMIM-LKQYN--PVIVFAFSKR 386
Query: 453 GCDAAVQYLEDCNLLDECEMSEVELALKRFR----ILYPDAVREPAIKGLL----KGVAA 504
C+A L+ C L + E E+ FR L D P I+ +L +G+
Sbjct: 387 QCEALA--LQMCKLEFNTD-DEKEMVSTVFRNAIDALSEDDRNLPQIEQILPLLRRGIGI 443
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +++ K + L+S
Sbjct: 444 HHGGLLPILKEVIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTAVRKWDGNEFRNLSS 503
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG-VEPLVSQFTASYGMVLNL 623
E QM+GRAGRRG+D+RG +V++ + KL+ G + L S F Y M+LNL
Sbjct: 504 GEFIQMSGRAGRRGLDDRG-IVIMMFDEKLEPSAAKLMVKGEADRLNSAFHLGYNMILNL 562
Query: 624 L 624
+
Sbjct: 563 M 563
>gi|387219033|gb|AFJ69225.1| ATP-dependent RNA helicase DOB1 [Nannochloropsis gaditana CCMP526]
Length = 1061
Score = 279 bits (713), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 181/484 (37%), Positives = 258/484 (53%), Gaps = 54/484 (11%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ+++I +G SV+V+A TS+GKT+ AE A ++ ++R+ YT+P+K
Sbjct: 124 AKEYAFALDPFQQAAIGFIEKGESVLVAAHTSAGKTVTAEYAIAMSLQKKQRVIYTSPIK 183
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+R+ E FGD VGL+TGD IN A LIMTTEILR+MLY+ ++
Sbjct: 184 ALSNQKYRDMAEEFGD--VGLMTGDITINPSATCLIMTTEILRSMLYRGSEIMR------ 235
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HY+ D RG VWEE II P +V+ + LSAT+ N+ E AGWI IH +
Sbjct: 236 EVAWVIYDEIHYMRDKDRGVVWEESIILLPHKVRFVFLSATIPNSQEFAGWIATIHHQPC 295
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RPVPL Y S L ++DEK SR
Sbjct: 296 HVVYTDYRPVPLQHYIFPSGGEGLYLVVDEK---------------------------SR 328
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R M + K + ++S++ +++ + RS D P I F F
Sbjct: 329 FREDNFQKAMAVLQGEGGEEESGKKKKNGGKGQQSELGKIVRLIME-RSYD--PVIIFSF 385
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----PAIKGLL----K 500
++R C+A Y + LD E E EL + F D++ E P + LL +
Sbjct: 386 SKRECEA---YALKMSKLDFNEEGEKELVEQVFTNAI-DSLSEEDKTLPQVVSLLPLLKR 441
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
GV HH G LPI K IE LFQ GL+K +FATET + GINMPA+T V + +K
Sbjct: 442 GVGIHHGGLLPILKEIIEILFQEGLIKCLFATETFSIGINMPAKTVVFTQCTKFDGKDFR 501
Query: 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 620
+T E QM+GRAGRRG D+RG V+++ + C +L+ + L S + SY M+
Sbjct: 502 WVTPGEYIQMSGRAGRRGKDDRGIVIMMMDSKMEPDVCKAILYGEPDKLYSSYHVSYNML 561
Query: 621 LNLL 624
LN+L
Sbjct: 562 LNML 565
>gi|224129500|ref|XP_002328732.1| predicted protein [Populus trichocarpa]
gi|222839030|gb|EEE77381.1| predicted protein [Populus trichocarpa]
Length = 1012
Score = 279 bits (713), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 176/487 (36%), Positives = 252/487 (51%), Gaps = 49/487 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F +D FQ +I G SV+VSA TS+GKT++A A ++ NQ+R+ YT+P+K
Sbjct: 76 AKEFPFTLDPFQSEAISCLDSGQSVMVSAHTSAGKTVVALYAIAMSLKNQQRVVYTSPIK 135
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFREF+E F D VGL+TGD I+ A L+MTTEI R+M Y+ SE+
Sbjct: 136 ALSNQKFREFKEEFSD--VGLMTGDVTIDPNASCLVMTTEIWRSMQYKG-----SETTR- 187
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V I+ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H +
Sbjct: 188 EVAWIIFDEVHYMRDRERGVVWEESILMAPKNARFVFLSATVPNAKEFADWVAKVHQQPC 247
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y S L ++DEK K + Q + + + P +G +
Sbjct: 248 HIVYTDYRPTPLQHYIFPSGGEGLYLVVDEKAKFRE-----DSFQKAVNALVPKAEGEKK 302
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R N + +N V+ G+ + I R Q P I F F
Sbjct: 303 RENGKWQKGLN----VSRLGEESDIFKMVKMIIRRQYD---------------PVILFSF 343
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREP-------------AI 495
++R C+ + +L + E + +E +L D + P +
Sbjct: 344 SKRECEFLAMQMAKMDLNQDDEKANIETIFWSAMDMLSDDDKKLPQASCPPLLLCVSNML 403
Query: 496 KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 555
L +G+ HH+G LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K
Sbjct: 404 PLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFD 463
Query: 556 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 615
L+S E QM+GRAGRRGID+RG +L+ +L + L S F
Sbjct: 464 GDKFRWLSSGEYIQMSGRAGRRGIDDRGVCILMVDEKLEPSTAKMMLKGSADSLNSAFHL 523
Query: 616 SYGMVLN 622
SY M+LN
Sbjct: 524 SYNMLLN 530
>gi|115484445|ref|NP_001065884.1| Os11g0176200 [Oryza sativa Japonica Group]
gi|62733691|gb|AAX95802.1| HUA enhancer 2 [Oryza sativa Japonica Group]
gi|77548918|gb|ABA91715.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|113644588|dbj|BAF27729.1| Os11g0176200 [Oryza sativa Japonica Group]
gi|218185351|gb|EEC67778.1| hypothetical protein OsI_35316 [Oryza sativa Indica Group]
gi|222615614|gb|EEE51746.1| hypothetical protein OsJ_33162 [Oryza sativa Japonica Group]
Length = 1003
Score = 279 bits (713), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 174/483 (36%), Positives = 257/483 (53%), Gaps = 37/483 (7%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E+A Y F++D FQ SI R SV+VSA TS+GKT IAE A + +++R+ YT+P
Sbjct: 75 EMAKAYPFQLDPFQSVSIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSP 134
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
LKALSNQK+RE + F D VGL+TGD + A L+MTTEILR MLY+ ++
Sbjct: 135 LKALSNQKYRELSQEFSD--VGLMTGDVTLQPNATCLVMTTEILRAMLYRGSEVIK---- 188
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V ++ DE+HY+ D RG VWEE II+ P ++++ LSAT++NA E A WI +H +
Sbjct: 189 --EVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNLHKQ 246
Query: 331 -TELITSSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL Y + L ++DE G+ N+L+L + K
Sbjct: 247 PCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDEDGQFRED----NFLKLQDTFTK-----Q 297
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
S + + RK ++ + G +A S + +++ + R P I F
Sbjct: 298 SNQVDGRKGGGPKASGRIAKGG---------SASGNSDIYRIVKMIME---RKFQPVIIF 345
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGV 502
F+RR C+ + + + E +E + + R PAI+ +L +G+
Sbjct: 346 SFSRRECEHHAMSMSKLDFNTDEEKDNIEQVFSSAILCLSEEDRGLPAIELMLPLLKRGI 405
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
A HH+G LP+ K +E LFQ GLVK +FATET A G+NMPA+T V +S+ K +
Sbjct: 406 AVHHSGLLPLIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTNRYI 465
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
S E QM+GRAGRRG D RG V++ ++ PLVS F SY +LN
Sbjct: 466 ASGEYIQMSGRAGRRGKDIRGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSYYTILN 525
Query: 623 LLA 625
L++
Sbjct: 526 LMS 528
>gi|195398015|ref|XP_002057620.1| GJ18233 [Drosophila virilis]
gi|194141274|gb|EDW57693.1| GJ18233 [Drosophila virilis]
Length = 1069
Score = 278 bits (712), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 175/485 (36%), Positives = 258/485 (53%), Gaps = 52/485 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ+ +I SV+VSA TS+GKT++AE A ++A ++R+ YTTP+K
Sbjct: 159 AKEYPFVLDPFQKQAILCIDNSQSVLVSAHTSAGKTVVAEYAIAKSLAAKQRVIYTTPIK 218
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQKFREF + F D VGL+TGD IN A LIMTTEILRNMLY+ ++
Sbjct: 219 ALSNQKFREFTDEFQD--VGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMR------ 270
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V +V DE+HY+ D RG VWEE +I P V+ + LSAT+ NA + A W+ +H +
Sbjct: 271 EVGWVVFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQFAEWVCHLHKQPC 330
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y + + ++DEKG+ + L+ + D R
Sbjct: 331 HVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQFKEDNFTTAMAVLANAGEAAKGDQKGR 390
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
+ + H +N + + + R P I F F
Sbjct: 391 KGGVKGHNSGQTN--------------------------IFKIVKMIMERHFAPVIIFSF 424
Query: 450 NRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL----KGVA 503
+++ C+ A+Q + D N +DE ++ + E+ +L + R P ++ +L +G+
Sbjct: 425 SKKDCEVYAMQMAKLDFNTIDEKKLVD-EVFNNAMDVLSEEDRRLPQVENVLPLLRRGIG 483
Query: 504 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563
HH G LPI K IE LF GL+K +FATET A G+NMPART + ++ K ++
Sbjct: 484 IHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKDFRWIS 543
Query: 564 SNELFQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
S E QMAGRAGRRG+D++G V+L+ +P G E ++ + L S F +Y M
Sbjct: 544 SGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPVVGRE----IVQGKADTLNSAFHLTYNM 599
Query: 620 VLNLL 624
VLNLL
Sbjct: 600 VLNLL 604
>gi|365759958|gb|EHN01710.1| Mtr4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1058
Score = 278 bits (712), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 169/480 (35%), Positives = 253/480 (52%), Gaps = 36/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I RG SV+VSA TS+GKT++AE A ++ N++R+ YT+P+K
Sbjct: 128 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 187
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 188 ALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 239
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V +V DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH +
Sbjct: 240 EVAWVVFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 299
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ ++ RP PL Y + + ++DEK +S SR
Sbjct: 300 HIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQVGDDPNSTESR 359
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
+ ++ + S + + +++ +W + P I F F
Sbjct: 360 GKKNQTYKG-----------------GSAKGDAKGDIYKIVKMIWKKKYN---PVIVFSF 399
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + + E + L P+ RE P IK +L +G+
Sbjct: 400 SKRDCEELALKMSKLDFNSDDEKDALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 459
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 460 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 519
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 520 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 579
>gi|356527455|ref|XP_003532326.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Glycine
max]
Length = 981
Score = 278 bits (712), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 170/480 (35%), Positives = 248/480 (51%), Gaps = 40/480 (8%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A + F +D FQ SI G SV+VSA TS+GKT++A A ++ N +R+ YT+P
Sbjct: 50 EPAKNFPFPLDPFQSKSISCLENGESVMVSAHTSAGKTVVALYAIAMSLRNGQRVVYTSP 109
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+REF+E F D VGL+TGD I+ A L+MTTEI R+M Y+ +
Sbjct: 110 IKALSNQKYREFKEEFSD--VGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSELTR---- 163
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V IV DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H +
Sbjct: 164 --EVAWIVFDEVHYMRDRERGVVWEESIVLSPKNSRFVFLSATVPNAKEFADWVAKVHQQ 221
Query: 331 -TELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL Y S L ++DEKGK + Q S + + P +G
Sbjct: 222 PCHVVYTDYRPTPLQHYLFPSGGDGLYLVVDEKGKFRE-----DSFQKSLNALIPATEGD 276
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
++ N + + R + + + + R P I F
Sbjct: 277 KKKENGKWQKGLVLG-------------------RSGEESDIFKMVKMIIQRQYDPVILF 317
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAIKGLL----KGV 502
F++R C+ + +L + E +E + +L D + P + +L +G+
Sbjct: 318 SFSKRECEFLAMQMAKMDLNGDNEKDNIEQIFCSAMDMLSDDDKKLPQVSNMLPLLKRGI 377
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH+G LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K +
Sbjct: 378 GVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWI 437
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
+S E QM+GRAGRRGID RG +L+ ++ + L S F SY M+LN
Sbjct: 438 SSGEYIQMSGRAGRRGIDERGICILMVDEKMEPSTAKNMVKGAADSLNSAFHLSYNMILN 497
>gi|357606471|gb|EHJ65082.1| hypothetical protein KGM_17243 [Danaus plexippus]
Length = 1036
Score = 278 bits (712), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 177/494 (35%), Positives = 262/494 (53%), Gaps = 47/494 (9%)
Query: 140 KEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATV 199
+E+ M E A Y F +D FQ+ +I SV+VSA TS+GKT++AE A ++
Sbjct: 112 QEYAQLMPITSEPAKQYSFILDPFQKEAIMCIDNLQSVLVSAHTSAGKTVVAEYAIALSL 171
Query: 200 ANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLY 259
N++R+ YTTP+KALSNQK+REF E F D VGL+TGD IN A LIMTTEILRNMLY
Sbjct: 172 KNKQRVIYTTPIKALSNQKYREFSEEFHD--VGLITGDVTINPSASCLIMTTEILRNMLY 229
Query: 260 QSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADE 319
+ ++ +V +V DE+HY+ D RG VWEE +I P V + LSAT+ NA +
Sbjct: 230 RGSEIMR------EVGWVVFDEIHYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQ 283
Query: 320 LAGWIGQIHGK-TELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLS 376
A W+ ++H + +I + RP PL Y ++ + ++DEKG+ + LS
Sbjct: 284 FAEWVCRLHSQPCHVIYTEYRPTPLQHYIFPASGDGIHLVVDEKGQFKEDNFNTAMTVLS 343
Query: 377 TSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL 436
+ GG+ R S + N ++ +
Sbjct: 344 NA-------GGASAGGERGRRGGLK----------GGSSSIFNIVKM------------I 374
Query: 437 RSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPA 494
R+ P I F F+++ C+ A+Q + D N ++E ++ + E+ +L D + P
Sbjct: 375 MERNFAPVIIFSFSKKDCELYAMQMAKLDFNTIEEKKLVD-EVFNNAMDVLSEDDRKLPQ 433
Query: 495 IKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 550
++ ++ +G+ HH G LPI K IE LF GL+K +FATET A G+NMPART V ++
Sbjct: 434 VENVIPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMPARTVVFTN 493
Query: 551 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 610
K +TS E QM+GRAGRRG+D++G V+L+ ++ +P+
Sbjct: 494 CQKFDGKDFRFITSGEYIQMSGRAGRRGLDDKGIVILMIDQKVTPSVVKSMVQGKADPIN 553
Query: 611 SQFTASYGMVLNLL 624
S F +Y MVLNLL
Sbjct: 554 SAFHLTYNMVLNLL 567
>gi|367012988|ref|XP_003680994.1| hypothetical protein TDEL_0D01990 [Torulaspora delbrueckii]
gi|359748654|emb|CCE91783.1| hypothetical protein TDEL_0D01990 [Torulaspora delbrueckii]
Length = 1075
Score = 278 bits (712), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 184/549 (33%), Positives = 277/549 (50%), Gaps = 56/549 (10%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I RG SV+VSA TS+GKT++AE A ++ ++R+ YT+P+K
Sbjct: 145 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLREKQRVIYTSPIK 204
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 205 ALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 256
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V +V DEVHY+ D RG VWEE II P +V + LSAT+ NA E A WI +IH +
Sbjct: 257 EVAWVVFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWICKIHVQPC 316
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y + + ++DEK +S
Sbjct: 317 HIVYTDFRPTPLQHYLFPAHGEGIYLVVDEKSTFREENFQKAMASIS------------- 363
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
++ D NS + GQ + + + +++ +W R P I F F
Sbjct: 364 ---NQSGDDPNSVDSRGKKGQ-SFKGGAAKGDAKGDIYKIVKMIW---KRKYNPVIVFSF 416
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + + E + L P+ RE P IK +L +G+
Sbjct: 417 SKRDCEELALKMSKLDFNSDDEKDALTKIFNNAIALLPEVDRELPQIKHILPLLRRGIGI 476
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 477 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 536
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 537 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 596
Query: 625 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDV 684
+V +S E ++E SF + + A + +L ++Q E D
Sbjct: 597 ---RVEGISPEF-----------------MLENSFFQFQNIVSVPAMEKKLIELQTEADK 636
Query: 685 LTSEISDDA 693
+ E D+
Sbjct: 637 IEIEDEDNV 645
>gi|225435997|ref|XP_002273102.1| PREDICTED: superkiller viralicidic activity 2-like 2 [Vitis
vinifera]
Length = 994
Score = 278 bits (712), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 167/478 (34%), Positives = 250/478 (52%), Gaps = 40/478 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A + F +D FQ +I+ SV+VSA TS+GKT++A A ++ N +R+ YT+P+K
Sbjct: 66 AKEFPFTLDPFQSEAIKCLDAEESVMVSAHTSAGKTVVALYAIAMSLQNNQRVIYTSPIK 125
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+REF+E F D VGL+TGD I A L+MTTEI R+M Y+ ++
Sbjct: 126 ALSNQKYREFKEEFSD--VGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEIIR------ 177
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE I+ P+ + + LSATV NA E A W+ ++H +
Sbjct: 178 EVAWVIFDEVHYMRDRERGVVWEESIVMAPRNSRFVFLSATVPNAKEFADWVAKVHQQPC 237
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y S L ++DEKGK + Q + + + P +G +
Sbjct: 238 HIVYTDYRPTPLQHYIFPSGGDGLYLVVDEKGKFRE-----DSFQKALNALVPAGEGDKK 292
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
R N ++ + +V G+ + + + R P I F F
Sbjct: 293 RENGKRQKGL----VVGRAGEES---------------DIFKMVKMIIQRQYDPVILFSF 333
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAIKGLL----KGVAA 504
++R C+ + +L D+ E +E +L D + P + +L +G+
Sbjct: 334 SKRDCEFLAMQMARMDLNDDNEKVNIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGV 393
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K ++S
Sbjct: 394 HHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISS 453
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
E QM+GRAGRRGID RG +L+ +L + L S F SY M+LN
Sbjct: 454 GEFIQMSGRAGRRGIDERGICILMVDEKLEPSTAKMMLKGSADCLNSAFHLSYNMLLN 511
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,550,933,279
Number of Sequences: 23463169
Number of extensions: 738491949
Number of successful extensions: 3852007
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5439
Number of HSP's successfully gapped in prelim test: 7003
Number of HSP's that attempted gapping in prelim test: 3734252
Number of HSP's gapped (non-prelim): 77595
length of query: 1174
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 1020
effective length of database: 8,745,867,341
effective search space: 8920784687820
effective search space used: 8920784687820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 83 (36.6 bits)