BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001047
(1174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 319 bits (818), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 208/624 (33%), Positives = 334/624 (53%), Gaps = 69/624 (11%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V L ++++ F +E+I A + F +D FQ+ ++ +G SV V+A TS+GK
Sbjct: 11 EWAHVVDLNHKIENF-DELIP--NPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 67
Query: 188 TLIXXXXXXXXXXNQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++ N + YT+P+KALSNQKFR+F+ETF D N+GL+TGD IN +A L
Sbjct: 68 TVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCL 127
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V+
Sbjct: 128 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-- 364
I LSATV N E A WIG+ K +I++ +RPVPL K L+P++++ + +
Sbjct: 182 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEA 241
Query: 365 NRKLSLNYLQLSTSEVKPYK--------------------DG-GSRRRNSRKHADMNSNN 403
N + L +++ P K DG G R ++R A+ +
Sbjct: 242 NFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSR 301
Query: 404 IVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED 463
+ G ++ + + + P++++ +LR R++LP + F+F+++ C+ +LE
Sbjct: 302 GAGAIGSNKRKFFTQDGPSKKTWPEIVN---YLRKRELLPMVVFVFSKKRCEEYADWLEG 358
Query: 464 CNLLDECEMSE----VELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIE 518
N + E S+ +E ++ R + D + + LL +G+A HH G LPI K IE
Sbjct: 359 INFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIE 418
Query: 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578
LF +G +KV+FATET A G+N+P RT + SS+ K +G +LT E QMAGRAGRRG
Sbjct: 419 ILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRG 478
Query: 579 IDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNLLAGAKVMHLSNESD 637
+D+ G V+++ + K + GV L SQF +Y M+LNLL
Sbjct: 479 LDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLR------------ 526
Query: 638 DMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL---TSEISDDAI 694
++AL+ ++++ SF + + ++ +Q+E + + EI D+ I
Sbjct: 527 -IEALR-------VEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYKSCEICDNDI 578
Query: 695 DRKSRRLLSEAAYKE-MANLQEEL 717
++ +L AYKE NL +E+
Sbjct: 579 EKFLELML---AYKEATVNLMQEM 599
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 29/145 (20%)
Query: 990 VIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
V+ +T +D N V+ G A I EL L ++ + L +P ++ A+ + V E
Sbjct: 808 VLKDTEFIDQNHNVLLK-GRVACEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVYE 866
Query: 1050 G---------IKVRLWKNNSSIYEPSTTVINVINV----LDEHRSSFLELQEKHGVEIPC 1096
G + RL K I E ++ V N L + + FL+ +
Sbjct: 867 GKTREEEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQDEAEFLDRK--------- 917
Query: 1097 CLDSQFSGM--VEAWASGLTWREMM 1119
+F+ M V WA GL+++E+M
Sbjct: 918 ----RFAMMNVVYEWARGLSFKEIM 938
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear
Exosome
Length = 1108
Score = 273 bits (697), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 250/480 (52%), Gaps = 36/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLK 212
A Y F +D FQ ++I RG SV+VSA TS+GKT++ N++R+ YT+P+K
Sbjct: 178 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 237
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 238 ALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 289
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH +
Sbjct: 290 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 349
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ ++ RP PL Y + + ++DEK +S
Sbjct: 350 HIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS------------- 396
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
++ D NS + GQ S + + +++ +W + P I F F
Sbjct: 397 ---NQIGDDPNSTDSRGKKGQ-TYKGGSAKGDAKGDIYKIVKMIWKKKYN---PVIVFSF 449
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + + E + L P+ RE P IK +L +G+
Sbjct: 450 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 509
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 510 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 569
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 570 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 629
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
pdb|2XGJ|B Chain B, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
Length = 1010
Score = 273 bits (697), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 250/480 (52%), Gaps = 36/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLK 212
A Y F +D FQ ++I RG SV+VSA TS+GKT++ N++R+ YT+P+K
Sbjct: 80 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 139
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 140 ALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 191
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH +
Sbjct: 192 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 251
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ ++ RP PL Y + + ++DEK +S
Sbjct: 252 HIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS------------- 298
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
++ D NS + GQ S + + +++ +W + P I F F
Sbjct: 299 ---NQIGDDPNSTDSRGKKGQ-TYKGGSAKGDAKGDIYKIVKMIWKKKYN---PVIVFSF 351
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + + E + L P+ RE P IK +L +G+
Sbjct: 352 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 411
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 412 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 471
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 472 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 531
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 140 bits (353), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 132/473 (27%), Positives = 218/473 (46%), Gaps = 82/473 (17%)
Query: 169 EAFLRGSSVVVSAPTSSGKTLIXXXXXXX-XXXNQRRIFYTTPLKALSNQKFREFR--ET 225
+ L G+ +++++PT SGKTLI N + Y TPL+AL+N+K+ F+ E
Sbjct: 41 KGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWEL 100
Query: 226 FGDNNVGLLTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDE 281
G V + +GD + + I+I T E L ++ L +V+ VLDE
Sbjct: 101 IG-FKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHR------PEWLNEVNYFVLDE 153
Query: 282 VHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPV 341
+HYL+D RG V E + I K ++ LSAT++N ++A W+G E + ++ RPV
Sbjct: 154 LHYLNDPERGPVVESVTIRA-KRRNLLALSATISNYKQIAKWLG-----AEPVATNWRPV 207
Query: 342 PLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNS 401
PL + + P + K K N +KD +++ ++
Sbjct: 208 PLI-----EGVIYP--ERKKKEYN---------------VIFKDNTTKK--------VHG 237
Query: 402 NNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL 461
++ + ++ LSKN + R+ T + A + F +A + L
Sbjct: 238 DDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKI-------ANYMNFVSLDENALSEIL 290
Query: 462 EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEEL 520
+ + ++E E EL +K L+ KGVA HHAG + IEE
Sbjct: 291 KQLDDIEEGGSDEKEL-----------------LKSLISKGVAYHHAGLSKALRDLIEEG 333
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSL---SKRTASGRIQLTSNELFQMAGRAGRR 577
F++ +KV+ AT TLAAG+N+PART ++ + +K+ A ++ E QM+GRAGR
Sbjct: 334 FRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRP 393
Query: 578 GIDNRGHVVLVQTPYEGAEECC-KLLFAGVEPLVSQFT---ASYGMVLNLLAG 626
G D G ++V E + K + + VEP+ S+ A Y +L +L+
Sbjct: 394 GFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSA 446
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 89/181 (49%), Gaps = 19/181 (10%)
Query: 170 AFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQR-RIFYTTPLKALSNQKFREFR--ETF 226
L G + ++S PT+SGKTLI Q + Y PLKAL+ +KF+EF+ E
Sbjct: 35 GILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKI 94
Query: 227 GDNNVGLLTGDSAINRE----AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEV 282
G V + TGD E I+I T E ++L S + DV ++V DE+
Sbjct: 95 G-LRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHG------SSWIKDVKILVADEI 147
Query: 283 HYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVP 342
H + RG E I+ + + QII LSAT+ N +ELA W+ ELI S RPV
Sbjct: 148 HLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNPEELAEWLN-----AELIVSDWRPVK 202
Query: 343 L 343
L
Sbjct: 203 L 203
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 494 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
AI+G GVA HHAG + +EE F++G++K V AT TL+AGIN PA ++ + +
Sbjct: 292 AIRG---GVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWR 348
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQF 613
+ G ++ E+ QM GRAGR D G ++V T + E +F E L SQ
Sbjct: 349 YSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQL 408
Query: 614 TASYGMVLNLLA 625
+ + +LA
Sbjct: 409 SNESNLRSQVLA 420
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA-SG 558
KG A HHAG L + +E+ F+RG +KVV AT TLAAG+N+PAR ++ SL + S
Sbjct: 297 KGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSK 356
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
RI+++ E QMAGRAGR G+D RG +++
Sbjct: 357 RIKVS--EYKQMAGRAGRPGMDERGEAIII 384
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 21/190 (11%)
Query: 164 QRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALSNQKFREFR 223
Q ++E G +++++ PT++GKTL+ + Y PL+AL+ +K+ F+
Sbjct: 30 QAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFK 89
Query: 224 --ETFGDNNVGLLTGDSAINRE----AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277
E G +G+ TGD E I++ T+E +++ + + V +
Sbjct: 90 KWEKIG-LRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKA------VSCL 142
Query: 278 VLDEVHYLSDISRGTVWEEIII---YCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
V+DE+H L RG E ++ K +++I LSAT N E+A W+ +
Sbjct: 143 VVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWL-----DADYY 197
Query: 335 TSSRRPVPLT 344
S RPVPL
Sbjct: 198 VSDWRPVPLV 207
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 106/446 (23%), Positives = 183/446 (41%), Gaps = 118/446 (26%)
Query: 176 SVVVSAPTSSGKTLIX--XXXXXXXXXNQRRIFYTTPLKALSNQKFREFRETFGD---NN 230
+V V APT SGKT+ ++ R Y TP++AL+ Q + ++ E F D
Sbjct: 944 NVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK 1003
Query: 231 VGLLTGDSAINRE----AQILIMTTE---ILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283
V LLTG+++ + + I+I T E IL Q + ++++ V+DEVH
Sbjct: 1004 VVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQ-------RKNVQNINLFVVDEVH 1056
Query: 284 YLSDISRGTVWEEI---IIYCPKEVQ----IICLSATVANADELAGWIGQIHGKTELITS 336
+ G V E I + Y +++ I+ LS++++NA ++A W+G T
Sbjct: 1057 LIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHP 1115
Query: 337 SRRPVPLTWYFS------TKTALL----PLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
+ RPVPL + T+T LL P+ KH +K + ++
Sbjct: 1116 NVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVP------------ 1163
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
SRK + + +I+T+ I+R + H +D++P
Sbjct: 1164 ------SRKQTRLTAIDILTTCAAD---------IQRQR-------FLHCTEKDLIP--- 1198
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 506
YLE L + + E LL GV H
Sbjct: 1199 -------------YLEK---LSDSTLKET----------------------LLNGVGYLH 1220
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN- 565
G P+ + +E+LF G ++VV A+ +L G+N+ A ++ + + +G+I +
Sbjct: 1221 EGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVII--MDTQYYNGKIHAYVDY 1278
Query: 566 ---ELFQMAGRAGRRGIDNRGHVVLV 588
++ QM G A R D+ G V++
Sbjct: 1279 PIYDVLQMVGHANRPLQDDEGRCVIM 1304
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 495 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
+K LL G A HHAG + ++ +E+LF ++V+ +T TLA G+N+PA T ++
Sbjct: 373 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 432
Query: 554 RTA-SGR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 590
+ GR +L + ++ QM GRAGR D +G +L+ +
Sbjct: 433 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITS 471
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 120/264 (45%), Gaps = 48/264 (18%)
Query: 119 PAPSWREEFK-WQRVEKLCNEVKEFGNE--MIDVDEL-----ASIYDFRI-----DKFQR 165
P S+R + K ++ V + K FG+E ++ V++L A F+ K R
Sbjct: 30 PDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYR 89
Query: 166 SSIEAFLRGSSVVVSAPTSSGKTLIXXXXXX-----------XXXXNQRRIFYTTPLKAL 214
+++E ++++ APT +GKT + + +I Y P+++L
Sbjct: 90 AALET---DENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSL 146
Query: 215 SNQKFREFRE---TFGDNNVGLLTGDSAINRE----AQILIMTTEILRNMLYQSVGMVSS 267
+ F + T+G V LTGD + +E QI++ T E + + G +
Sbjct: 147 VQEMVGSFGKRLATYGIT-VAELTGDHQLCKEEISATQIIVCTPE--KWDIITRKGGERT 203
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADEL 320
+ L V +I+LDE+H L D RG V E ++ ++V++I LSAT+ N +++
Sbjct: 204 YTQL--VRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDV 260
Query: 321 AGWIGQIHGKTEL-ITSSRRPVPL 343
A ++ K +S RPVPL
Sbjct: 261 ATFLRVDPAKGLFYFDNSFRPVPL 284
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 106/446 (23%), Positives = 183/446 (41%), Gaps = 118/446 (26%)
Query: 176 SVVVSAPTSSGKTLIX--XXXXXXXXXNQRRIFYTTPLKALSNQKFREFRETFGD---NN 230
+V V APT SGKT+ ++ R Y TP++AL+ Q + ++ E F D
Sbjct: 944 NVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK 1003
Query: 231 VGLLTGDSAINRE----AQILIMTTE---ILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283
V LLTG+++ + + I+I T E IL Q + ++++ V+DEVH
Sbjct: 1004 VVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQ-------RKNVQNINLFVVDEVH 1056
Query: 284 YLSDISRGTVWEEI---IIYCPKEVQ----IICLSATVANADELAGWIGQIHGKTELITS 336
+ G V E I + Y +++ I+ LS++++NA ++A W+G T
Sbjct: 1057 LIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHP 1115
Query: 337 SRRPVPLTWYFS------TKTALL----PLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
+ RPVPL + T+T LL P+ KH +K + ++
Sbjct: 1116 NVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVP------------ 1163
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
SRK + + +I+T+ I+R + H +D++P
Sbjct: 1164 ------SRKQTRLTAIDILTTCAAD---------IQRQR-------FLHCTEKDLIP--- 1198
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 506
YLE L + + E LL GV H
Sbjct: 1199 -------------YLEK---LSDSTLKET----------------------LLNGVGYLH 1220
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN- 565
G P+ + +E+LF G ++VV A+ +L G+N+ A ++ + + +G+I +
Sbjct: 1221 EGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVII--MDTQYYNGKIHAYVDY 1278
Query: 566 ---ELFQMAGRAGRRGIDNRGHVVLV 588
++ QM G A R D+ G V++
Sbjct: 1279 PIYDVLQMVGHANRPLQDDEGRCVIM 1304
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 495 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
+K LL G A HHAG + ++ +E+LF ++V+ +T TLA G+N+PA T ++
Sbjct: 373 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 432
Query: 554 RTA-SGR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 590
+ GR +L + ++ QM GRAGR D +G +L+ +
Sbjct: 433 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITS 471
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 120/264 (45%), Gaps = 48/264 (18%)
Query: 119 PAPSWREEFK-WQRVEKLCNEVKEFGNE--MIDVDEL-----ASIYDFRI-----DKFQR 165
P S+R + K ++ V + K FG+E ++ V++L A F+ K R
Sbjct: 30 PDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYR 89
Query: 166 SSIEAFLRGSSVVVSAPTSSGKTLIXXXXXX-----------XXXXNQRRIFYTTPLKAL 214
+++E ++++ APT +GKT + + +I Y P+++L
Sbjct: 90 AALET---DENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSL 146
Query: 215 SNQKFREFRE---TFGDNNVGLLTGDSAINRE----AQILIMTTEILRNMLYQSVGMVSS 267
+ F + T+G V LTGD + +E QI++ T E + + G +
Sbjct: 147 VQEMVGSFGKRLATYGIT-VAELTGDHQLCKEEISATQIIVCTPE--KWDIITRKGGERT 203
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADEL 320
+ L V +I+LDE+H L D RG V E ++ ++V++I LSAT+ N +++
Sbjct: 204 YTQL--VRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDV 260
Query: 321 AGWIGQIHGKTEL-ITSSRRPVPL 343
A ++ K +S RPVPL
Sbjct: 261 ATFLRVDPAKGLFYFDNSFRPVPL 284
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 38/201 (18%)
Query: 145 EMIDVDELASIYDFRIDK----------------FQRSSIEAFLRGSSVVVSAPTSSGKT 188
E I+V+E+ DF + K Q+ +I L+G V+ +A T SGKT
Sbjct: 17 EKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKT 76
Query: 189 LIXXXXXXX-------XXXNQRRIFYTTPLKALSNQKFREFRETFGDNN---VGLLTGDS 238
L + + +P + L+ Q F R+ G N+ GL+ G
Sbjct: 77 LAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKV-GKNHDFSAGLIIGGK 135
Query: 239 AINREAQ------ILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
+ EA+ IL+ T L + ++V ++ D+ ++VLDE + D+
Sbjct: 136 DLKHEAERINNINILVCTPGRLLQHMDETVSFHAT-----DLQMLVLDEADRILDMGFAD 190
Query: 293 VWEEIIIYCPKEVQIICLSAT 313
+I PK+ Q + SAT
Sbjct: 191 TMNAVIENLPKKRQTLLFSAT 211
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 81/203 (39%), Gaps = 26/203 (12%)
Query: 127 FKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSG 186
F+ LCN V E N + + E+ + + Q SI L G ++ +A T SG
Sbjct: 49 FEDTSFASLCNLVNE--NTLKAIKEMGFT---NMTEIQHKSIRPLLEGRDLLAAAKTGSG 103
Query: 187 KTLIXXXXXXXXXX-------NQRRIFYTTPLKALSNQKFREFRE--TFGDNNVGLLTGD 237
KTL N + +P + L+ Q F +E T + GL+ G
Sbjct: 104 KTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGG 163
Query: 238 SAINREAQ-------ILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISR 290
S + EAQ I++ T L + + + G + ++ +V+DE + D+
Sbjct: 164 SNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYK-----NLQCLVIDEADRILDVGF 218
Query: 291 GTVWEEIIIYCPKEVQIICLSAT 313
++II P Q + SAT
Sbjct: 219 EEELKQIIKLLPTRRQTMLFSAT 241
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 500 KGV--AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP-ARTAVLSSLSKRTA 556
KG+ AA+HAG ++ ++E FQR +++V AT GIN P R V + +
Sbjct: 259 KGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGXGINKPNVRFVVHFDIPRNIE 318
Query: 557 SGRIQLTSNELFQMAGRAGRRGI 579
S +Q GRAGR G+
Sbjct: 319 S---------YYQETGRAGRDGL 332
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 500 KGV--AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP-ARTAVLSSLSKRTA 556
KG+ AA+HAG ++ ++E FQR +++V AT GIN P R V + +
Sbjct: 259 KGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIE 318
Query: 557 SGRIQLTSNELFQMAGRAGRRGI 579
S +Q GRAGR G+
Sbjct: 319 S---------YYQETGRAGRDGL 332
>pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5
(Melanoma Differentiation-Associated Protein 5),
Dech-Domain
Length = 216
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 15/143 (10%)
Query: 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALSN 216
+ ++ +Q + L G ++++ PT SGKT + +++ + L N
Sbjct: 31 ELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVN 90
Query: 217 ------QKFREFRETFGDN--NVGLLTGDSAIN-------REAQILIMTTEILRNMLYQS 261
Q FR+ + F V L+GD+ + + I+I T +IL N L
Sbjct: 91 KVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNL 150
Query: 262 VGMVSSESGLFDVDVIVLDEVHY 284
+ L D +I++DE H+
Sbjct: 151 ENGEDAGVQLSDFSLIIIDECHH 173
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 7/138 (5%)
Query: 178 VVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALSNQKFREFRETFGD--NNVGLLT 235
+V GKT + N +++ P L+ Q + FR+ F + + +++
Sbjct: 628 LVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMIS 687
Query: 236 GDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWE 295
+ + QIL E ++L + ++ S+ D+ ++++DE H G +
Sbjct: 688 RFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRF-----GVRHK 742
Query: 296 EIIIYCPKEVQIICLSAT 313
E I V I+ L+AT
Sbjct: 743 ERIKAMRANVDILTLTAT 760
>pdb|3RC8|A Chain A, Human Mitochondrial Helicase Suv3 In Complex With Short
Rna Fragment
Length = 677
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 17/178 (9%)
Query: 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTT 209
D+L I D RI A R + S PT+SGKT + + Y
Sbjct: 132 DDLRKISDLRIPPNWYPDARAMQR-KIIFHSGPTNSGKTY----HAIQKYFSAKSGVYCG 186
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSES 269
PLK L++ E F +N + D + E ++ + + + +V M S +
Sbjct: 187 PLKLLAH-------EIFEKSNAAGVPCD-LVTGEERVTVQPNGKQASHVSCTVEMCSVTT 238
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIII-YCPKEVQIICLSATVANADELAGWIGQ 326
+V V+DE+ + D +RG W ++ C +EV + A + EL G+
Sbjct: 239 ---PYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGE 293
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 527 KVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-----LTSNELFQMAGRAGR 576
K++ AT+ + G+N+ R + SL K + + + + +T+++ Q+AGRAGR
Sbjct: 374 KILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGR 428
>pdb|3RC3|A Chain A, Human Mitochondrial Helicase Suv3
Length = 677
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 527 KVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-----LTSNELFQMAGRAGR 576
K++ AT+ + G+N+ R + SL K + + + + +T+++ Q+AGRAGR
Sbjct: 374 KILVATDAIGXGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGR 428
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 17/178 (9%)
Query: 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTT 209
D+L I D RI A R + S PT+SGKT + + Y
Sbjct: 132 DDLRKISDLRIPPNWYPDARAXQR-KIIFHSGPTNSGKTY----HAIQKYFSAKSGVYCG 186
Query: 210 PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSES 269
PLK L++ E F +N + D + E ++ + + + +V S +
Sbjct: 187 PLKLLAH-------EIFEKSNAAGVPCD-LVTGEERVTVQPNGKQASHVSCTVEXCSVTT 238
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIII-YCPKEVQIICLSATVANADELAGWIGQ 326
+V V+DE+ + D +RG W ++ C +EV + A + EL G+
Sbjct: 239 ---PYEVAVIDEIQXIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVXELXYTTGE 293
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 15/137 (10%)
Query: 163 FQRSSIEAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALSN------ 216
+Q + L G ++++ PT GKT + +++ + L N
Sbjct: 11 YQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVE 70
Query: 217 QKFREFRETFGDN--NVGLLTGDSAIN-------REAQILIMTTEILRNMLYQSVGMVSS 267
Q FR+ + F V L+GD+ + + I+I T +IL N L +
Sbjct: 71 QLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDA 130
Query: 268 ESGLFDVDVIVLDEVHY 284
L D +I++DE H+
Sbjct: 131 GVQLSDFSLIIIDECHH 147
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP-ARTAVLSSLSKRTASGRIQ 561
A+HA P K+ + + ++VV AT GI+ P R + S+SK
Sbjct: 295 GAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSK-------- 346
Query: 562 LTSNELFQMAGRAGR 576
+ +Q +GRAGR
Sbjct: 347 -SMENYYQESGRAGR 360
>pdb|3IBG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|B Chain B, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|C Chain C, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|D Chain D, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|E Chain E, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|F Chain F, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
Length = 348
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 71/156 (45%), Gaps = 11/156 (7%)
Query: 610 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVML 669
+SQ ++ +G +LN + GA+ ++ D + LQ SL E V F N + +
Sbjct: 182 LSQLSSQFGPMLNSILGARGGLPGGQNID-ELLQKMESLRETISEVNTQFKNPDMTTFVC 240
Query: 670 AAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRR 729
E + ET+ + E++ ID + ++++ + + + E+ A RR
Sbjct: 241 VCIAEFLSL-YETERMIQELTSYGIDTHAI-VVNQLLFPKEGSGCEQCNA--------RR 290
Query: 730 RMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVE 765
+M+ K ++++ +DF +P L + + E +E
Sbjct: 291 KMQKKYLEQIEELYEDFNVVRMPLLVEEVRGKEKLE 326
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 19/164 (11%)
Query: 163 FQRSSIEAFLRGSSVVVSAPTSSGKT---LIXXXXXXXXXXNQRRIFYTTPLKALS---N 216
Q SI L G ++ A +GK+ LI + + P + L+ +
Sbjct: 29 IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVS 88
Query: 217 QKFREFRETFGDNNVGLLTGDSAINRE-------AQILIMTTEILRNMLYQSVGMVSSES 269
Q + + G V TG + + + ++I T + +++ + V V
Sbjct: 89 QICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDH-- 146
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSAT 313
V +IVLDE L + E+II+ PK QI+ SAT
Sbjct: 147 ----VQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSAT 186
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-LTSNELFQMAGRAGRRGI 579
F+ G KV+ T LA GI++P + V++ A+G+ T GR GR+G+
Sbjct: 81 FREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV 140
>pdb|4DZS|A Chain A, Crystal Structure Of Yeast Puf4p Rna Binding Domain In
Complex With Ho-4be Mutant Rna
pdb|4DZS|B Chain B, Crystal Structure Of Yeast Puf4p Rna Binding Domain In
Complex With Ho-4be Mutant Rna
Length = 357
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 646 RSLEEARKLVEQSFGNYVGSNVMLAAKDELCK-IQKETDVLTSEISDDAIDRKSRRLLSE 704
R +EE+ + + Y+GS L C+ +QK+ D+L S+ + DAI +++ E
Sbjct: 17 RKIEESSRFADAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAA-DAIFEETKDYTVE 75
Query: 705 AAYKEMAN-----LQEELKAEKRF 723
N L EE+ E+R
Sbjct: 76 LMTDSFGNYLIQKLLEEVTTEQRI 99
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 30.0 bits (66), Expect = 8.4, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-LTSNELFQMAGRAGRRGI 579
F+ G KV+ T LA GI++P + V++ A+G+ T GR GR+G+
Sbjct: 82 FREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV 141
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-LTSNELFQMAGRAGRRGI 579
F+ G KV+ T LA GI++P + V++ A+G+ T GR GR+G+
Sbjct: 289 FREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV 348
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 30.0 bits (66), Expect = 8.5, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-LTSNELFQMAGRAGRRGI 579
F+ G KV+ T LA GI++P + V++ A+G+ T GR GR+G+
Sbjct: 83 FREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV 142
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-LTSNELFQMAGRAGRRGI 579
F+ G KV+ T LA GI++P + V++ A+G+ T GR GR+G+
Sbjct: 289 FREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV 348
>pdb|2JAN|A Chain A, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|B Chain B, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|C Chain C, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|D Chain D, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
Length = 432
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 994 TRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKV 1053
T A++ ++ +F GE A +E LA LR + +LKP + LV+ G+
Sbjct: 314 TAAVEHASRALFGRGELARL----DEATLAAALRETTVAELKPGSPDGIVDLLVASGLSA 369
Query: 1054 RLWKNNSSIYEPSTTVINV 1072
+I+E +V N+
Sbjct: 370 SKGAARRTIHEGGVSVNNI 388
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,662,264
Number of Sequences: 62578
Number of extensions: 1175185
Number of successful extensions: 3042
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2979
Number of HSP's gapped (non-prelim): 59
length of query: 1174
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1064
effective length of database: 8,089,757
effective search space: 8607501448
effective search space used: 8607501448
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)