BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001047
(1174 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B9DFG3|ISE2_ARATH DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic
OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2
Length = 1171
Score = 1644 bits (4256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 820/1181 (69%), Positives = 976/1181 (82%), Gaps = 28/1181 (2%)
Query: 11 TTFPVFANTKPFSFHQFH------TLSHTLGFCIPKPL-LSSNSIQFQASYKSPKSFFPT 63
T PV + T SF FH +LSH+ F K L L+ N + F+++ S P+
Sbjct: 2 NTLPVVSLTASSSFKFFHFPSLHRSLSHSPNFSFTKSLILNPNHLSFKSTLNS---LSPS 58
Query: 64 EHKLTDADEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSD-----DEFEVSSDSS 118
+ +L + ++ +E ++D E+ DE D +SDEI+ SD +E E S D
Sbjct: 59 QSQLYEEEDDEEEEEED------EDDDDEAADEYDNISDEIRNSDDDDDDEETEFSVDL- 111
Query: 119 PAPSWRE--EFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSS 176
P S RE EF+WQRVEKL + V++FG EMID+DEL SIYDFRIDKFQR +IEAFLRGSS
Sbjct: 112 PTESARERVEFRWQRVEKLRSLVRDFGVEMIDIDELISIYDFRIDKFQRLAIEAFLRGSS 171
Query: 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236
VVVSAPTSSGKTLIAEAAAV+TVA RR+FYTTPLKALSNQKFREFRETFGD+NVGLLTG
Sbjct: 172 VVVSAPTSSGKTLIAEAAAVSTVAKGRRLFYTTPLKALSNQKFREFRETFGDDNVGLLTG 231
Query: 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEE 296
DSAIN++AQI+IMTTEILRNMLYQSVGM SS +GLF VD IVLDEVHYLSDISRGTVWEE
Sbjct: 232 DSAINKDAQIVIMTTEILRNMLYQSVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEE 291
Query: 297 IIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPL 356
I+IYCPKEVQ+ICLSATVAN DELAGWIG+IHGKTEL+TS+RRPVPLTWYFSTK +LLPL
Sbjct: 292 IVIYCPKEVQLICLSATVANPDELAGWIGEIHGKTELVTSTRRPVPLTWYFSTKHSLLPL 351
Query: 357 LDEKGKHMNRKLSLNYLQLSTSEVK--PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLS 414
LDEKG ++NRKLSLNYLQLS SE + DG +RR+ ++ D + NN+V + + LS
Sbjct: 352 LDEKGINVNRKLSLNYLQLSASEARFRDDDDGYRKRRSKKRGGDTSYNNLV-NVTDYPLS 410
Query: 415 KNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE 474
KN IN IRRSQVPQ+ DTLWHL+ ++MLPAIWFIFNRRGCDAAVQY+E+ LLD+CE SE
Sbjct: 411 KNEINKIRRSQVPQISDTLWHLQGKNMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSE 470
Query: 475 VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 534
VELALK+FR+LYPDAVRE A KGLL+G+AAHHAGCLP+WKSFIEELFQRGLVKVVFATET
Sbjct: 471 VELALKKFRVLYPDAVRESAEKGLLRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATET 530
Query: 535 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 594
LAAGINMPARTAV+SSLSK+ + RI+L NEL+QMAGRAGRRGID +G+ VLVQT +EG
Sbjct: 531 LAAGINMPARTAVISSLSKKAGNERIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEG 590
Query: 595 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 654
AEECCKL+FAGV+PLVSQFTASYGMVLNL+AG+KV S+ ++ K LQAGRSLEEA+KL
Sbjct: 591 AEECCKLVFAGVKPLVSQFTASYGMVLNLVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKL 650
Query: 655 VEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQ 714
VE+SFGNYV SNV +AAK EL +I + ++L+SEISD+AID+KSR+LLS YKE+ L+
Sbjct: 651 VEKSFGNYVSSNVTVAAKQELAEIDNKIEILSSEISDEAIDKKSRKLLSARDYKEITVLK 710
Query: 715 EELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLG 774
EEL+ EKR R E RRRMEL+RF ALK +LK E G+LPF+CL++KDSEG E SVPAVYLG
Sbjct: 711 EELREEKRKRAEQRRRMELERFLALKPLLKGMEEGNLPFICLEFKDSEGREQSVPAVYLG 770
Query: 775 KFDSLDSSKLKNMASINDSFALNRLA-QSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKW 833
DS SKL+ M S+++SFALN + + D+ +VKPSYYVALGSDN+WY FTEKW
Sbjct: 771 HIDSFQGSKLQKMMSLDESFALNLIEDELAADEPGKPNVKPSYYVALGSDNSWYLFTEKW 830
Query: 834 IKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWS 893
++TVYR GFPN+ALA GDALPRE M LLDK +M W+KLA+SE G LW +EGSLETWSWS
Sbjct: 831 VRTVYRTGFPNIALALGDALPREIMKNLLDKADMQWDKLAESELGSLWRLEGSLETWSWS 890
Query: 894 LNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVK 953
LNVPVLSSLS+ DEVLHMS EY +A + YKEQR+K++RLKKK++R+EGF+EYKKI++
Sbjct: 891 LNVPVLSSLSDEDEVLHMSEEYDNAAQKYKEQRSKISRLKKKMSRSEGFREYKKILENAN 950
Query: 954 FTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAA 1013
T EK+KRLKARS+RL R+EQIEPSGWK+F+RISNVIHE+RALDINT +IFPLGETAAA
Sbjct: 951 LTVEKMKRLKARSRRLINRLEQIEPSGWKDFMRISNVIHESRALDINTHLIFPLGETAAA 1010
Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
IRGENELWLAMVLRNK L+DLKP QLA VCASLVSEGIKVR W++N+ IYEPS TV++++
Sbjct: 1011 IRGENELWLAMVLRNKALVDLKPPQLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMV 1070
Query: 1074 NVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 1133
N L++ RSS ++LQEKH V IPCCLD QFSGMVEAWASGL+W+EMMM+CA+D+GDLARLL
Sbjct: 1071 NFLEDQRSSLIKLQEKHEVMIPCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLL 1130
Query: 1134 RRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG 1174
RRTIDLLAQIPKLPD+D LQ++A A+++MDRPPISELAG
Sbjct: 1131 RRTIDLLAQIPKLPDIDPVLQRSAAAAADIMDRPPISELAG 1171
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 327 bits (839), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 193/527 (36%), Positives = 298/527 (56%), Gaps = 42/527 (7%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
+W V L ++++ F +E+I A + F +D FQ+ ++ +G SV V+A TS+GK
Sbjct: 301 EWAHVVDLNHKIENF-DELIP--NPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 357
Query: 188 TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
T++AE A N + YT+P+KALSNQKFR+F+ETF D N+GL+TGD IN +A L
Sbjct: 358 TVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCL 417
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
IMTTEILR+MLY+ ++ DV+ ++ DEVHY++D RG VWEE+II P+ V+
Sbjct: 418 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 471
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-- 364
I LSATV N E A WIG+ K +I++ +RPVPL K L+P++++ + +
Sbjct: 472 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEA 531
Query: 365 NRKLSLNYLQLSTSEVKPYK--------------------DG-GSRRRNSRKHADMNSNN 403
N + L +++ P K DG G R ++R A+ +
Sbjct: 532 NFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSR 591
Query: 404 IVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED 463
+ G ++ + + + P++++ +LR R++LP + F+F+++ C+ +LE
Sbjct: 592 GAGAIGSNKRKFFTQDGPSKKTWPEIVN---YLRKRELLPMVVFVFSKKRCEEYADWLEG 648
Query: 464 CNLLDECEMSE----VELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIE 518
N + E S+ +E ++ R + D + + LL +G+A HH G LPI K IE
Sbjct: 649 INFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIE 708
Query: 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578
LF +G +KV+FATET A G+N+P RT + SS+ K +G +LT E QMAGRAGRRG
Sbjct: 709 ILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRG 768
Query: 579 IDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNLL 624
+D+ G V+++ + K + GV L SQF +Y M+LNLL
Sbjct: 769 LDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLL 815
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 990 VIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 1049
V+ +T +D N V+ G A I EL L ++ + L +P ++ A+ + V E
Sbjct: 1098 VLKDTEFIDQNHNVLLK-GRVACEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVYE 1156
Query: 1050 G---------IKVRLWKNNSSIYEPSTTVINVINV----LDEHRSSFLELQEKHGVEIPC 1096
G + RL K I E ++ V N L + + FL+ +
Sbjct: 1157 GKTREEEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQDEAEFLDRK--------- 1207
Query: 1097 CLDSQFSGM--VEAWASGLTWREMMMDCALDDGDLARLL 1133
+F+ M V WA GL+++E+M +G + R++
Sbjct: 1208 ----RFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVI 1242
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium leprae (strain TN) GN=helY
PE=3 SV=1
Length = 920
Score = 322 bits (824), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 219/623 (35%), Positives = 313/623 (50%), Gaps = 78/623 (12%)
Query: 146 MIDVDELASI---YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ 202
M D+ ELA F +D FQ+ + A RG V+V APT +GKT++ E A +A
Sbjct: 1 MTDLAELARFTAELPFSLDDFQQRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60
Query: 203 RRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSV 262
+ FYTTPLKALSNQK+ + +G N +GLLTGD ++N ++ +++MTTE+LRNMLY
Sbjct: 61 GKCFYTTPLKALSNQKYTDLTARYGRNRIGLLTGDQSVNGDSPVVVMTTEVLRNMLY--- 117
Query: 263 GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAG 322
+ L + +V+DEVH+++D RG VWEE+I++ P +V+++ LSATV+NA+E G
Sbjct: 118 ---ADSFALQGLSHVVMDEVHFIADRMRGPVWEEVILHLPDDVRMVSLSATVSNAEEFGG 174
Query: 323 WIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 382
W+ + G T ++ RPVPL + L L D ++ N L+ + +
Sbjct: 175 WVQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYDSNVDQSPVNPNLLR-HIAHCR- 232
Query: 383 YKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442
D S RN R+ A S + ++ R +V ++D + +L
Sbjct: 233 EADRMSDWRNPRRRAGRGSG----------VRPRFYRSLARPEVIAILD------AEGLL 276
Query: 443 PAIWFIFNRRGCDAAVQYL--EDCNLLDECEMSEV---------ELALKRFRILYPDAVR 491
PAI F+F+R GCDAAVQ L E E +++ +LA +L R
Sbjct: 277 PAITFVFSRFGCDAAVQQCLRSPLRLTSEEERAQIAEVIDHRCGDLADADLAVLGYYEWR 336
Query: 492 EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551
E GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART VL L
Sbjct: 337 E----GLLRGLAAHHAGMLPAFRHAVEELFTAGLVKAVFATETLALGINMPARTVVLERL 392
Query: 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE---GAEECCKLLFAGVEP 608
K + LT E Q+ GRAGRRGID GH V++ P E G L A P
Sbjct: 393 VKFNGKQHVPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPSEDTSGPSAVAGLASARTFP 452
Query: 609 LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVM 668
L S F SY M +NL +H S E A L+EQSF Y +
Sbjct: 453 LRSSFVPSYNMTINL------VHWM-------------SPERAHALLEQSFAQYQADRSV 493
Query: 669 LAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELR 728
+ + + + ++SE+ +A E A L+ + +R ++ +
Sbjct: 494 VGLVRGIERCTQVLGDISSELGG-----------PDAPILEYARLRARIAEMERAQSFVF 542
Query: 729 RRMELKRFSALKDILKDFENGHL 751
R L+R A D+L G +
Sbjct: 543 R---LQRKQAANDVLAALRRGDI 562
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 112/271 (41%), Gaps = 22/271 (8%)
Query: 883 MEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGF 942
+ +L + + L+VP + + D++ ++D V + E +A L+ ++ R
Sbjct: 632 LASALRSAATRLSVPDIGDGVDGDKI-----GFNDGVLHDPE----LASLRAQLRRHR-- 680
Query: 943 KEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHE---TRALDI 999
+DT E+ R++ + +L +++ S + F RI ++ E R
Sbjct: 681 SNNAPGLDTQLQQAERYLRIERYNAQLQRKVAAATNSLARTFDRIVGLLIERDFIRGPAD 740
Query: 1000 NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNN 1059
+ QV G A I E++L +A LR L+PA+LAAV ++++ E
Sbjct: 741 DPQVTDD-GRLLARIYSESDLLVAECLRTGAWAGLRPAELAAVVSAVLYETRGDDGPGGP 799
Query: 1060 SSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWA-SGLTWREM 1118
P+ + + ++ +++H + + D F G++ WA +G +
Sbjct: 800 VDAEAPTPRLRQALQHTSRLSATLRADEQRHRIALSREPDDGFVGVIYCWARTGDLAAVL 859
Query: 1119 MM------DCALDDGDLARLLRRTIDLLAQI 1143
L GD R R+ +DLL Q+
Sbjct: 860 AAADASGNGAPLSAGDFVRWCRQVLDLLDQL 890
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 315 bits (808), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 202/536 (37%), Positives = 276/536 (51%), Gaps = 73/536 (13%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
E+ ++D + F +D FQ+ + A RG V+V APT +GKT++ E A +A
Sbjct: 2 TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGS 61
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
+ FYTTPLKALSNQK + +G + +GLLTGD ++N A +++MTTE+LRNMLY
Sbjct: 62 KCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLY---- 117
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LSATV+NA+E GW
Sbjct: 118 --ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGW 175
Query: 324 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD------EKGKHMNRKLSLNYLQLST 377
I + G T ++ RPVPL + + L D E +NR+L L ++
Sbjct: 176 IQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNREL-LRHI---- 230
Query: 378 SEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437
+ RR + + AD + R P+VI L
Sbjct: 231 ----------AHRREADRMADWQPR---------RRGSGRPGFYRPPGRPEVIAK---LD 268
Query: 438 SRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV---------ELALKRFRILY 486
+ +LPAI F+F+R GCDAAV Q L L E E + + +LA +L
Sbjct: 269 AEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLG 328
Query: 487 PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
RE GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPART
Sbjct: 329 YYEWRE----GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTV 384
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606
VL L K + LT E Q+ GRAGRRGID GH V++ P E L
Sbjct: 385 VLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRT 444
Query: 607 EPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNY 662
PL S F SY M +NL +H ++A +L+EQSF Y
Sbjct: 445 FPLRSSFAPSYNMTINL------VHRMGP-------------QQAHRLLEQSFAQY 481
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 313 bits (801), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 198/571 (34%), Positives = 301/571 (52%), Gaps = 46/571 (8%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V E+A + F +D FQ+ +I G SV V+A TS+GKT++AE A + + YT
Sbjct: 270 VPEMALDFPFELDNFQKEAIYHLEMGDSVFVAAHTSAGKTVVAEYAIALAQKHMTKAIYT 329
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQKFR+F+ F D VG+LTGD +N E L+MTTEILR+MLY+ ++
Sbjct: 330 SPIKALSNQKFRDFKHKFED--VGILTGDVQVNPEGSCLLMTTEILRSMLYRGADLIR-- 385
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
DV+ ++ DEVHY++D+ RG VWEE+II P V +I LSATV N E A W+G+
Sbjct: 386 ----DVEFVIFDEVHYVNDLERGVVWEEVIIMLPPHVTLILLSATVPNTKEFASWVGRTK 441
Query: 329 GKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
K +I++ +RPVPL Y K + ++D+ G R L Y + + KP K
Sbjct: 442 KKNIYVISTLKRPVPLEHYLWVKQNMFKIVDQHG----RFLMDGYKSANDALKKPDKPVI 497
Query: 388 SR-RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
++ +NS + V + + S ++ R + + HL +++LP I
Sbjct: 498 AKDNKNSARGRGAARGRGVQT--NMMRGRGSAKSVERRDANTWVHLIGHLHKQNLLPVIV 555
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELA-------LKRFRILYPDAVREPAIKGLL 499
F+F+++ C+ V L + +L + E SEV + LK+ L P R + L
Sbjct: 556 FVFSKKRCEEYVDTLTNRDLNNHQEKSEVHVVIEKAVARLKKEDRLLPQIGRMREM--LS 613
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+G+A HH G LPI K +E LFQRGLVKV+FATET A G+NMPA++ V S K
Sbjct: 614 RGLAVHHGGLLPIIKEIVEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDGRNF 673
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYG 618
L E Q +GRAGRRG+D G V+++ ++ ++ L+SQF +Y
Sbjct: 674 RDLLPGEYTQCSGRAGRRGLDVTGTVIILSRSELPDTASLRHMIMGPSSKLISQFRLTYN 733
Query: 619 MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKI 678
M+LNLL +V L E ++++SF V ++ ++++
Sbjct: 734 MILNLL---RVETLRIED-----------------MIKRSFSENVNQTLVPQHEEKIKSF 773
Query: 679 QKETDVLTSEISDDAIDRKSRRLLSEAAYKE 709
+++ L E+SD + LLS ++KE
Sbjct: 774 EEKLSALKKEMSDVDLKEIKSCLLSSESFKE 804
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 305 bits (782), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 276/525 (52%), Gaps = 51/525 (9%)
Query: 113 VSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL 172
VS+ +P P +E+ W + V +F + + A + F D FQ+ +I
Sbjct: 269 VSTPEAPEPPSQEQ--WAIPVDATSPVGDFYRL---IPQPAFQWAFEPDVFQKQAILHLE 323
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
R SV V+A TS+GKT++AE A + R YT+P+KALSNQKFR+FR TFGD VG
Sbjct: 324 RHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VG 381
Query: 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
LLTGD ++ EA LIMTTEILR+MLY ++ D++ ++ DEVHY++D+ RG
Sbjct: 382 LLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIR------DLEWVIFDEVHYINDVERGV 435
Query: 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF---- 347
VWEE++I P V II LSATV NA E A WIG++ + +I++ RPVPL Y
Sbjct: 436 VWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGN 495
Query: 348 --STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIV 405
T+ L LLD +G + Y +++ KHA
Sbjct: 496 SSKTQGELFLLLDSRGAFHTKGY--------------YAAVEAKKERMSKHAQ------- 534
Query: 406 TSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465
+FG Q + A R + L LR+R LP + F F+R CD L +
Sbjct: 535 -TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLD 590
Query: 466 LLDECEMSEVELALKRFRILYPDAVRE-PAI----KGLLKGVAAHHAGCLPIWKSFIEEL 520
L E SE+ L L+R + R+ P + + L +G+ HH+G LPI K +E L
Sbjct: 591 LTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEML 650
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580
F RGLVKV+FATET A G+NMPART V S+ K S L E QMAGRAGRRG+D
Sbjct: 651 FSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD 710
Query: 581 NRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
G V+L+ + + +++ L SQF +Y M+LNLL
Sbjct: 711 PTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL 755
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 281 bits (718), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 171/480 (35%), Positives = 255/480 (53%), Gaps = 36/480 (7%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ ++I RG SV+VSA TS+GKT++AE A ++ N++R+ YT+P+K
Sbjct: 143 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 202
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 203 ALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMR------ 254
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH +
Sbjct: 255 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 314
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ ++ RP PL Y + + ++DEK +S
Sbjct: 315 HIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS------------- 361
Query: 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449
++ D NS + GQ S + + +++ +W + P I F F
Sbjct: 362 ---NQIGDDPNSTDSRGKKGQ-TYKGGSAKGDAKGDIYKIVKMIWKKKYN---PVIVFSF 414
Query: 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 504
++R C+ + + + E + L P+ RE P IK +L +G+
Sbjct: 415 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 474
Query: 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 564
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 475 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 534
Query: 565 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624
E QM+GRAGRRG+D+RG V+++ + ++ + L S F Y M+LNL+
Sbjct: 535 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 594
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 280 bits (715), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 183/500 (36%), Positives = 268/500 (53%), Gaps = 70/500 (14%)
Query: 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR 203
N+ I D A Y F +D FQ ++I+ R SV+VSA TS+GKT+IAE A + N++
Sbjct: 110 NKHIPSDPPAKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGKTVIAEYAIAQALKNRQ 169
Query: 204 RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
R+ YT+P+K+LSNQK+RE FGD VGL+TGD +IN A LIMTTEILR MLY++
Sbjct: 170 RVIYTSPIKSLSNQKYRELLSEFGD--VGLMTGDVSINPSASCLIMTTEILRAMLYKNSE 227
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
+ + ++ ++ DEVHY+ D RG VWEE +I P ++ I LSAT+ NA + A W
Sbjct: 228 I------MHEIAWVIFDEVHYMRDKDRGVVWEETLILLPDAIRFIFLSATLPNALQFARW 281
Query: 324 IGQIHGK-TELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEV 380
I +IH + ++ + RP PL + + A + L+DEK K +V
Sbjct: 282 ISEIHKQPCHVVYTDYRPTPLQHFIYPQGADGIYMLVDEKNKFKTENF---------KKV 332
Query: 381 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 440
D +R+ N + + +++ R +I+ + R
Sbjct: 333 LEVLDHSTRQEN---------------YSKSSKKVKKSSSLER-----IINMVLSNRYD- 371
Query: 441 MLPAIWFIFNRRGCDA-AVQY-------LEDCNLLDEC------EMSEVELALKRFRILY 486
P I F F+++ C+ A Q+ E+ L+ E ++SE + L++F
Sbjct: 372 --PIIVFCFSKKECEINAHQFGKLDLNDTENKELVTEIFDSAINQLSEEDRGLRQF---- 425
Query: 487 PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
E LL+G+ HH+G LPI K +E LFQ GLV+++FATET + G+NMPART
Sbjct: 426 -----EEMRSLLLRGIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLNMPARTV 480
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH--VVLVQTPYEGAEECCKLLFA 604
+ + K + + LTS E QM+GRAGRRGID +G V+L Q+ E A C L+
Sbjct: 481 LFTKAQKFSGNNFRWLTSGEYMQMSGRAGRRGIDTKGLSIVILDQSIDEQAARC--LMNG 538
Query: 605 GVEPLVSQFTASYGMVLNLL 624
+ L S F SYGM+LNL+
Sbjct: 539 QADVLNSAFHLSYGMILNLM 558
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3
SV=1
Length = 1026
Score = 279 bits (714), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 178/482 (36%), Positives = 257/482 (53%), Gaps = 45/482 (9%)
Query: 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210
E A Y F++D FQ+ +I SV+VSA TS+GKT++A A + ++R+ YT+P
Sbjct: 117 EPAKYYPFQLDAFQKQAILCIDNNQSVLVSAHTSAGKTVVATYAIAKCLREKQRVIYTSP 176
Query: 211 LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESG 270
+KALSNQK+RE E F D VGL+TGD +N +A L+MTTEILR+MLY+ ++
Sbjct: 177 IKALSNQKYRELEEEFKD--VGLMTGDVTLNPDASCLVMTTEILRSMLYRGSEIMK---- 230
Query: 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 330
+V +V DE+HY+ D RG VWEE II K ++ LSAT+ NA + A W+ I +
Sbjct: 231 --EVGWVVYDEIHYMRDKERGVVWEETIILMSKNIKQAFLSATIPNARQFAQWVASIKQQ 288
Query: 331 -TELITSSRRPVPLT-WYFST-KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387
++ + RP PL W + + +++ KG+ K L+T+ G
Sbjct: 289 PVNVVYTDYRPTPLQHWIYPVGGEGMYEVVNVKGEFREDKFRDAMSGLATA-------GD 341
Query: 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
S S N + G Q N + IR + S D L I F
Sbjct: 342 S----------AGSFNKRRTGGGTQGDSNVLKIIR------------SVASNDGLNCIVF 379
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGV 502
F+R+ C++ L+D + + E V+ + L P+ + P I +L +G+
Sbjct: 380 SFSRKECESYAISLKDMDFNKDHEKGMVKSVYESAIAQLSPEDQKLPQILNILPLLRRGI 439
Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
HH+G +PI K IE LF GLVKV+FATET + G+NMPART V +S K S +
Sbjct: 440 GVHHSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKFDGSDNRYI 499
Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 622
TS E QMAGRAGRRG D+RG V+L+ A++ +++ +PL SQF +Y MVLN
Sbjct: 500 TSGEYIQMAGRAGRRGKDDRGTVILMVDSAMSADDAKQIIKGATDPLNSQFRLTYNMVLN 559
Query: 623 LL 624
L+
Sbjct: 560 LM 561
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus
GN=Skiv2l2 PE=2 SV=1
Length = 1040
Score = 273 bits (698), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 181/489 (37%), Positives = 262/489 (53%), Gaps = 56/489 (11%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V + A Y F +D FQR +I+ SV+VSA TS+GKT+ AE A + ++R+ +T
Sbjct: 127 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT 186
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQK+RE E F D VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 187 SPIKALSNQKYREMYEEFQD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMR-- 242
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+V ++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H
Sbjct: 243 ----EVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH 298
Query: 329 GK-TELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
+ +I + RP PL Y + L ++DE G R+ + N + ++ +D
Sbjct: 299 KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF--REDNFN------TAMQVLRD 350
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
G + +K G+ +K N V + + R+ P I
Sbjct: 351 AGDLAKGDQK-------------GRKGGTKGPSN---------VFKIVKMIMERNFQPVI 388
Query: 446 WFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL---- 499
F F+++ C+A A+Q + D N +E +M E E+ L + + P ++ +L
Sbjct: 389 IFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFNNAIDCLSDEDKKLPQVEHVLPLLK 447
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+G+ HH G LPI K IE LF GL+K +FATET A GINMPART + ++ K
Sbjct: 448 RGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKYDGKDF 507
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTA 615
++S E QM+GRAGRRG+D+RG V+L+ +P G + LL +PL S F
Sbjct: 508 RWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ----LLKGSADPLNSAFHL 563
Query: 616 SYGMVLNLL 624
+Y MVLNLL
Sbjct: 564 TYNMVLNLL 572
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens
GN=SKIV2L2 PE=1 SV=3
Length = 1042
Score = 273 bits (697), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 181/489 (37%), Positives = 262/489 (53%), Gaps = 56/489 (11%)
Query: 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208
V + A Y F +D FQR +I+ SV+VSA TS+GKT+ AE A + ++R+ +T
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT 188
Query: 209 TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+P+KALSNQK+RE E F D VGL+TGD IN A L+MTTEILR+MLY+ ++
Sbjct: 189 SPIKALSNQKYREMYEEFQD--VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMR-- 244
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
+V ++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H
Sbjct: 245 ----EVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH 300
Query: 329 GK-TELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385
+ +I + RP PL Y + L ++DE G R+ + N + ++ +D
Sbjct: 301 KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF--REDNFN------TAMQVLRD 352
Query: 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAI 445
G + +K G+ +K N V + + R+ P I
Sbjct: 353 AGDLAKGDQK-------------GRKGGTKGPSN---------VFKIVKMIMERNFQPVI 390
Query: 446 WFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL---- 499
F F+++ C+A A+Q + D N +E +M E E+ L + + P ++ +L
Sbjct: 391 IFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLPQVEHVLPLLK 449
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+G+ HH G LPI K IE LF GL+K +FATET A GINMPART + ++ K
Sbjct: 450 RGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDF 509
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLV----QTPYEGAEECCKLLFAGVEPLVSQFTA 615
++S E QM+GRAGRRG+D+RG V+L+ +P G + LL +PL S F
Sbjct: 510 RWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ----LLKGSADPLNSAFHL 565
Query: 616 SYGMVLNLL 624
+Y MVLNLL
Sbjct: 566 TYNMVLNLL 574
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 267 bits (682), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 170/483 (35%), Positives = 253/483 (52%), Gaps = 43/483 (8%)
Query: 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212
A Y F +D FQ SI R SV+VSA TS+GKT++AE A ++ +++R+ YT+P+K
Sbjct: 192 ARTYPFTLDPFQAVSIACIERQESVLVSAHTSAGKTVVAEYAVAQSLRDKQRVIYTSPIK 251
Query: 213 ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLF 272
ALSNQK+RE FGD VGL+TGD IN +A L+MTTEILR+MLY+ ++
Sbjct: 252 ALSNQKYRELLAEFGD--VGLMTGDVTINPDATCLVMTTEILRSMLYRGSEVMR------ 303
Query: 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 331
+V ++ DE+HY+ D RG VWEE II P + + LSAT+ NA + A WI +IH +
Sbjct: 304 EVAWVIFDEIHYMRDKERGVVWEETIILLPDKSHFVFLSATIPNAMQFAEWITKIHRQPC 363
Query: 332 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389
++ + RP PL Y S + ++DEK +++ +
Sbjct: 364 HVVYTDFRPTPLQHYLFPSGSDGIHLVVDEKSN--------------------FREENFQ 403
Query: 390 RRNS---RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
R S K D + + T + S + +++ + ++ P I
Sbjct: 404 RAMSALMEKQGD-DPAAMATKGNAKKGKTGKGGVKGPSDIYKIVKMIM---VKNYNPVIV 459
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KG 501
F F++R C+A + ++ D+ E V + RE P I+ +L +G
Sbjct: 460 FSFSKRECEALALQMSKLDMNDQTERDLVTTIFNNAVNQLSEKDRELPQIEHILPLLRRG 519
Query: 502 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561
+ HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +++ K
Sbjct: 520 IGIHHSGLLPILKEVIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTNVRKFDGKTFRW 579
Query: 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621
++ E QM+GRAGRRG+D+RG V+L+ +L + L S F SY M+L
Sbjct: 580 ISGGEYIQMSGRAGRRGLDDRGIVILMIDEKMDPPVAKSMLKGEADRLDSAFHLSYNMIL 639
Query: 622 NLL 624
NLL
Sbjct: 640 NLL 642
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 140/486 (28%), Positives = 229/486 (47%), Gaps = 88/486 (18%)
Query: 160 IDKFQRSSIEAFLRG----SSVVVSAPTSSGKTLIAEAAAVATVANQR-RIFYTTPLKAL 214
I K EA +G ++++ PT+SGKTL+AE ++ + N+ + Y TPL+AL
Sbjct: 24 IKKLNPPQTEAVKKGLIEDKRLLITTPTASGKTLMAELGMISHLLNKGGKAIYVTPLRAL 83
Query: 215 SNQKFREFR--ETFGDNNVGLLTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSE 268
+++K+ F+ E G VG+ +GD + R I++ T E L ++ S
Sbjct: 84 TSEKYSTFKDWEKLG-FKVGVTSGDYDTDDPWLRNFDIIVTTYEKLDSLWRHSA------ 136
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIH 328
L D+D VLDE HY++D RG V E + + ++ I+ LSAT+ NA ++A W+
Sbjct: 137 EWLKDIDYFVLDEFHYMNDGDRGPVVEGVAVRAKRQGTILALSATIGNAKDVAKWL---- 192
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
+++ ++ RPVPL K + Y + + Y DG +
Sbjct: 193 -NADIVATNWRPVPL-----------------------KEGVMYSEGKKGHIILYSDGTT 228
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448
+ + ++ + ++ LSK + RS + + M + +
Sbjct: 229 NK--------LKGDDPIIAYTLDILSKGGQVIVFRSSRK-------YAETTAMKISQYMN 273
Query: 449 FNRRGCDAAVQYLEDCNLLDECE-MSEVELALKRFR-ILYPDAVREPAIKGLLKGVAAHH 506
F + L+D LL+ E + EVE A + +LY VR GVA HH
Sbjct: 274 FVK---------LDDKKLLETAERIKEVEDAGSNEKEVLYNLIVR---------GVAFHH 315
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK--RTASGRIQLTS 564
AG + IE F+ ++KV+ AT TLAAG+N+PAR V+ + + R G ++ S
Sbjct: 316 AGLSKGLRDIIEASFRERIIKVITATPTLAAGVNLPARAVVIGDIYRFNRKIVGFTEMIS 375
Query: 565 N-ELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS---YGM 619
E QM+GRAGR G DN G ++LV++ E + K L + +EP+ S+ A +
Sbjct: 376 TMEYRQMSGRAGRPGYDNHGEAIILVRSKVEVDKVIDKYLHSDIEPIESKLGAEGPFFSF 435
Query: 620 VLNLLA 625
VL+L+A
Sbjct: 436 VLSLIA 441
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
SV=1
Length = 704
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 138/472 (29%), Positives = 225/472 (47%), Gaps = 83/472 (17%)
Query: 169 EAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR-RIFYTTPLKALSNQKFREFR--ET 225
+ L G ++V++PT+SGKTLIAE + + ++ + Y TPL+AL+N+K+ F+ ET
Sbjct: 37 KGLLDGKRLLVTSPTASGKTLIAELGMINYLLSKGGKAIYITPLRALTNEKYNTFKDWET 96
Query: 226 FGDNNVGLLTGD----SAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDE 281
G G+ +GD A I++ T E L ++ ++ +V VLDE
Sbjct: 97 LGIKT-GMTSGDYDTDDAWLENYDIIVTTYEKLDSLWRHKAKWLN------EVSYFVLDE 149
Query: 282 VHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPV 341
HYL+D RG E + I K ++ LSAT++N E+A W+ EL+ ++ RPV
Sbjct: 150 FHYLNDPERGPTVESVAIRAKKRGIVLGLSATISNGKEIANWL-----NAELVATNWRPV 204
Query: 342 PLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNS 401
PL + + P ++KG V YKD SR+ +
Sbjct: 205 PL-----KEGIIYP--EKKGF-----------------VVVYKDNTSRK--------VYG 232
Query: 402 NNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL 461
++ + ++ +SK + RS +T +R ++ + F+ L
Sbjct: 233 DDAIIAYTLDIVSKGGQVLVFRSSRKLAENT-----ARKIVQYMNFV-----------KL 276
Query: 462 EDCNLLDEC-EMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 520
ED LL+ ++ EVE A +E +L+GVA HHAG + IE
Sbjct: 277 EDKKLLEIARKIKEVEDA--------GSNEKEDLYNLVLRGVAYHHAGLSKGLRDIIESS 328
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSK--RTASGRIQLTS-NELFQMAGRAGRR 577
F+ ++KV+ AT TLAAG+N+PAR V+ + + R G + L + QM+GRAGR
Sbjct: 329 FRDRILKVIVATPTLAAGVNLPARAVVIGDIYRYNRKVVGYMDLIPVMDYKQMSGRAGRP 388
Query: 578 GIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQF---TASYGMVLNLLA 625
G D G VV+V+ E + + L + VEP+ S+ +A Y +++++A
Sbjct: 389 GFDENGEAVVVVRNKREAEKVYERYLMSDVEPIESKLGSESAFYSFLISIIA 440
>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
Length = 783
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 145/495 (29%), Positives = 215/495 (43%), Gaps = 100/495 (20%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---------NQRRI 205
+Y + + +R E G+++V S PT+SGKTLIA+ A ++ +A
Sbjct: 25 LYPPQAEAVERGVTE----GANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGTA 80
Query: 206 FYTTPLKALSNQKFREFR--ETFGDNNVGLLTG----DSAINREAQILIMTTEILRNMLY 259
Y PL+AL+ +K +EF E FG +VG+ TG D A + I++ T+E + +++
Sbjct: 81 LYIVPLRALAGEKAQEFEAFERFG-LSVGVSTGNYERDGARLADNDIVVATSEKVDSLVR 139
Query: 260 QSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEV---QIICLSATVAN 316
G + D+ +V DEVH + D RG E + ++V Q++ LSATV N
Sbjct: 140 NGAGWID------DLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVADLQVVALSATVGN 193
Query: 317 ADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLS 376
A ELA W+ EL+ S RP+ L G H + L
Sbjct: 194 AGELAAWL-----DAELVDSDWRPIEL---------------RTGVHYGQSLH------- 226
Query: 377 TSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI-DTLWH 435
Y DG Q +LS S SQ V+ DTL
Sbjct: 227 ------YDDG----------------------TQAELSVGS-----GSQTAAVVADTLA- 252
Query: 436 LRSRDMLPAIWFIFNRRGCDAAVQYLEDC--NLLDECEMSEVELALKRFRILYPDAVREP 493
D + F+ +RR +A+ + L D N L E + R + +
Sbjct: 253 ----DDGSTLVFVNSRRNAEASARRLADVTGNALSSAERERLADIAAEIRGVSDTETSDE 308
Query: 494 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
+ G A HHAG + +EE F+ LVK V AT TLAAG+N PAR V+ +
Sbjct: 309 LADAVASGAAFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRDWQR 368
Query: 554 --RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC-KLLFAGVEPLV 610
TA G L E+ QM GRAGR G+D G VL+ ++ EE + ++A EP+
Sbjct: 369 YDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELEELFDRYVYADPEPVR 428
Query: 611 SQFTASYGMVLNLLA 625
S+ A + ++LA
Sbjct: 429 SKLAAEPALRTHVLA 443
>sp|B0R7Q2|HELS_HALS3 Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=OE_4325F PE=3 SV=1
Length = 783
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 145/495 (29%), Positives = 215/495 (43%), Gaps = 100/495 (20%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---------NQRRI 205
+Y + + +R E G+++V S PT+SGKTLIA+ A ++ +A
Sbjct: 25 LYPPQAEAVERGVTE----GANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGTA 80
Query: 206 FYTTPLKALSNQKFREFR--ETFGDNNVGLLTG----DSAINREAQILIMTTEILRNMLY 259
Y PL+AL+ +K +EF E FG +VG+ TG D A + I++ T+E + +++
Sbjct: 81 LYIVPLRALAGEKAQEFEAFERFG-LSVGVSTGNYERDGARLADNDIVVATSEKVDSLVR 139
Query: 260 QSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEV---QIICLSATVAN 316
G + D+ +V DEVH + D RG E + ++V Q++ LSATV N
Sbjct: 140 NGAGWID------DLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVADLQVVALSATVGN 193
Query: 317 ADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLS 376
A ELA W+ EL+ S RP+ L G H + L
Sbjct: 194 AGELAAWL-----DAELVDSDWRPIEL---------------RTGVHYGQSLH------- 226
Query: 377 TSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI-DTLWH 435
Y DG Q +LS S SQ V+ DTL
Sbjct: 227 ------YDDG----------------------TQAELSVGS-----GSQTAAVVADTLA- 252
Query: 436 LRSRDMLPAIWFIFNRRGCDAAVQYLEDC--NLLDECEMSEVELALKRFRILYPDAVREP 493
D + F+ +RR +A+ + L D N L E + R + +
Sbjct: 253 ----DDGSTLVFVNSRRNAEASARRLADVTGNALSSAERERLADIAAEIRGVSDTETSDE 308
Query: 494 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
+ G A HHAG + +EE F+ LVK V AT TLAAG+N PAR V+ +
Sbjct: 309 LADAVASGAAFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRDWQR 368
Query: 554 --RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC-KLLFAGVEPLV 610
TA G L E+ QM GRAGR G+D G VL+ ++ EE + ++A EP+
Sbjct: 369 YDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELEELFDRYVYADPEPVR 428
Query: 611 SQFTASYGMVLNLLA 625
S+ A + ++LA
Sbjct: 429 SKLAAEPALRTHVLA 443
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 133/473 (28%), Positives = 222/473 (46%), Gaps = 82/473 (17%)
Query: 169 EAFLRGSSVVVSAPTSSGKTLIAEAAAVA-TVANQRRIFYTTPLKALSNQKFREFR--ET 225
+ L G+ +++++PT SGKTLIAE ++ + N + Y TPL+AL+N+K+ F+ E+
Sbjct: 34 KGLLDGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWES 93
Query: 226 FGDNNVGLLTGD----SAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDE 281
G V + +GD A + I+I T E L ++ L + + VLDE
Sbjct: 94 IG-FKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHR------PDWLNEANYFVLDE 146
Query: 282 VHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPV 341
+HYL+D RG V E + I K ++ LSAT++N ++A W+G E + ++ RPV
Sbjct: 147 LHYLNDPERGPVVESVTIRA-KRRNLLALSATISNYKQIAKWLG-----AEPVATNWRPV 200
Query: 342 PLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNS 401
PL + + P E+ K Y L ++D +R+ ++
Sbjct: 201 PL-----MEGVMYP---ERKKK-------EYTIL-------FRDNTARK--------VHG 230
Query: 402 NNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL 461
++ + ++ LSKN + R+ T + A + F A + L
Sbjct: 231 DDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKI-------ANYMNFVSLDEKAISEIL 283
Query: 462 EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEEL 520
+ + ++E E EL +K L+ KGVA HHAG + IEE
Sbjct: 284 KQLDDIEEGGSDEKEL-----------------LKSLISKGVAYHHAGLSKALRDIIEES 326
Query: 521 FQRGLVKVVFATETLAAGINMPARTAVLSSL---SKRTASGRIQLTSNELFQMAGRAGRR 577
F++ +KV+ AT TLAAG+N+PART ++ + +++ ++ E QM+GRAGR
Sbjct: 327 FRKRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNRKIVGYYDEIPVMEYKQMSGRAGRP 386
Query: 578 GIDNRGHVVLVQTPYEGAEECC-KLLFAGVEPLVSQFT---ASYGMVLNLLAG 626
G D G ++V E + K + + VEP+ S+ A Y +L +L+
Sbjct: 387 GFDQIGESIIVVRDKEDVDRVFKKYILSDVEPIESKLGSERAFYTFLLGILSA 439
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 138/453 (30%), Positives = 197/453 (43%), Gaps = 90/453 (19%)
Query: 172 LRGSSVVVSAPTSSGKTLIAEAAAVATVANQR-RIFYTTPLKALSNQKFREFR--ETFGD 228
L G +++V+ PT+SGKTLIAE A + + + Y PLKAL+ +KFREF+ E G
Sbjct: 37 LEGENLLVAIPTASGKTLIAEIAIANKLLEEGGKAVYIVPLKALAEEKFREFKDWERLG- 95
Query: 229 NNVGLLTGDSAINRE----AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284
V + TGD E I+I T E ++L S + DV ++V+DE+H
Sbjct: 96 LKVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHG------SSWIRDVKMLVIDEIHL 149
Query: 285 LSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLT 344
+ RG E II QII LSAT+ N +ELA W+ +LI S RPV L
Sbjct: 150 IGSRDRGATLEFIITQMLGRAQIIGLSATIGNPEELAEWLN-----AKLIRSDWRPVKL- 203
Query: 345 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNI 404
KG + ++DGGS R NS +
Sbjct: 204 --------------RKGVFYQGFVF-------------WEDGGSERYNSWEEL------- 229
Query: 405 VTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED- 463
+A+++ + A+ F+ RR + L
Sbjct: 230 ------------VYDAVKKGK-----------------GALVFVNMRRKAEKTALELAKK 260
Query: 464 -CNLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 521
N LD E+ E+ ELA L + E K LL GVA HHAG + +E+ F
Sbjct: 261 VKNYLDRKELRELRELA----ESLEENPTNEKLAKALLSGVAFHHAGLGRDERVLVEDNF 316
Query: 522 QRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDN 581
++GL+KVV AT TL+AGIN PA ++ + + G ++ E+ QM GRAGR D
Sbjct: 317 RKGLIKVVVATPTLSAGINTPAFRVIIRDTWRYSEFGMERIPVLEVQQMMGRAGRPRYDE 376
Query: 582 RGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 614
G ++V T E + + E L SQ +
Sbjct: 377 VGEAIIVSTTEEPSLVIDHYIKGKPEKLFSQLS 409
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
PE=3 SV=1
Length = 799
Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 133/479 (27%), Positives = 215/479 (44%), Gaps = 89/479 (18%)
Query: 164 QRSSIEAFL-RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREF 222
Q ++EA + G ++V S PT+SGKTLIAE A +++VA + Y PL+AL+++K +F
Sbjct: 29 QAEAVEAGVTEGENLVASIPTASGKTLIAELAMLSSVARGGKALYIVPLRALASEKQADF 88
Query: 223 RETFGDNNVGLLTGDSAINREAQ--------ILIMTTEILRNMLYQSVGMVSSESGLFDV 274
E GL G S N E++ I++ T+E + +++ + D+
Sbjct: 89 EEF---EQYGLDIGVSTGNYESEGGWLADKDIVVATSEKVDSLVRNDAPWIE------DL 139
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPK---EVQIICLSATVANADELAGWIGQIHGKT 331
+V DEVH + D RG E + + ++Q + LSAT+ NA+ LA W+
Sbjct: 140 TCVVTDEVHLVDDGERGPTLEVTLAKLRRLNPDLQTVALSATIGNAEALATWL-----DA 194
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
L+ S RP+ L +KG H + L L + GS++R
Sbjct: 195 GLVDSDWRPIDL---------------QKGVHYGQALHL--------------EDGSQQR 225
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
S ++ + + IV DTL D + F+ +R
Sbjct: 226 LSVQNNEKQTAAIVR------------------------DTL-----EDDGSTLVFVNSR 256
Query: 452 RGCDAAVQYLEDC--NLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509
R +AA L + L E ++ + R + + + G A HHAG
Sbjct: 257 RNAEAAAGRLANTVRPHLSTEERDQLADIAEEIRDVSDTETSDDLADAVADGAAFHHAGL 316
Query: 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS--KRTASGRIQLTSNEL 567
+ +E+ F+ LVKVV AT TLAAG+N P+R V+ +A G L+ E+
Sbjct: 317 SRGHRELVEDAFRDRLVKVVCATPTLAAGVNTPSRRVVVRDWRRYDGSAGGMAPLSVLEV 376
Query: 568 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC-KLLFAGVEPLVSQFTASYGMVLNLLA 625
QM GRAGR G+D G VL+ + ++ +E + ++A EP+ S+ A + ++LA
Sbjct: 377 HQMMGRAGRPGLDPYGEAVLIASSHDEVDELFERYVWADPEPVRSKLAAEPALRTHILA 435
>sp|Q3IU46|HELS_NATPD Putative ski2-type helicase OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=NP_0492A PE=3 SV=1
Length = 747
Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 135/505 (26%), Positives = 218/505 (43%), Gaps = 96/505 (19%)
Query: 147 IDVDELASIYDFRIDKFQRSSIEAFL------------RGSSVVVSAPTSSGKTLIAEAA 194
+DV E++ + + D + IE+ G S+V S PT+SGKTL+A+ A
Sbjct: 1 MDVSEVSGVPPWFADHLREEGIESLYPPQAAAVDAGVADGESLVASVPTASGKTLVAQLA 60
Query: 195 AVATVANQRRIFYTTPLKALSNQKFREFR--ETFGDNNVGLLTGDSAINRE----AQILI 248
++ + Y PL+AL+++K EF E +G +VG+ TG E I++
Sbjct: 61 MLSAIDRGGTALYIVPLRALASEKREEFAAFEEYG-LSVGVTTGSYEDTGEWLADKDIIV 119
Query: 249 MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK---EV 305
T+E + +++ + D+D +V DEVH + D RG E + + +
Sbjct: 120 ATSEKVDSLVRNGAPWID------DLDCVVADEVHLVDDEHRGPTLEVTLAKLRRVNPNL 173
Query: 306 QIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 365
Q++ LSATV NA E+A W+ EL+ SS RP+ L KG H
Sbjct: 174 QVVALSATVGNAGEMAEWL-----DAELVDSSWRPIEL---------------RKGVHYG 213
Query: 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQ 425
+ L + T + P Q ++ A+ R
Sbjct: 214 QAL---HFGDGTQQELPV----------------------------QRTEKPTEAVVRET 242
Query: 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL--LDECEMSEVELALKRFR 483
+ + TL F+ +RR + A + L + LD E + + + R
Sbjct: 243 LDEGGSTL------------VFVNSRRNAEGAAKRLAKTTVDGLDADERAALSSLAEEIR 290
Query: 484 ILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 543
+ + + +G A HHAGC +S +E+ F+ L+K + AT TLAAG+N PA
Sbjct: 291 AVSDTETSDDLADCVEQGAAFHHAGCSSEHRSLVEDAFRDRLIKTICATPTLAAGVNTPA 350
Query: 544 RTAVLSSLSKRT--ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC-K 600
R V+ + + A G L+ E+ QM GRAGR G D G VL+ ++ +E +
Sbjct: 351 RRVVVRDWRRYSGDAGGMQPLSVLEVHQMMGRAGRPGRDPYGEAVLLADSHDELDELLDR 410
Query: 601 LLFAGVEPLVSQFTASYGMVLNLLA 625
++A EP+ S+ M +LLA
Sbjct: 411 YVWADPEPVESKLAREPSMRTHLLA 435
>sp|A6UN73|HELS_METVS Putative ski2-type helicase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=Mevan_0030 PE=3 SV=1
Length = 751
Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 129/490 (26%), Positives = 226/490 (46%), Gaps = 80/490 (16%)
Query: 164 QRSSIEAFL--RGSSVVVSAPTSSGKTLIAEAAAVATVANQ------RRIFYTTPLKALS 215
Q+ IE L + + ++ PT+SGKTLI E A + V ++ ++ + PLKAL+
Sbjct: 20 QKKVIEEGLLDKSKNFLICIPTASGKTLIGEMALLNHVLDENYNLTGKKGLFIVPLKALA 79
Query: 216 NQKFREFR---ETFGDNNVGLLTGDSAINREA---QILIMTTEILRNMLYQSVGMVSSES 269
++KF EF+ ET+G VG+ GD + I+I T+E L +++ ++ +
Sbjct: 80 SEKFDEFQKKYETYGIK-VGMSIGDYDTKEDLSKYNIIITTSEKLDSLMRHNIEWIK--- 135
Query: 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK-EVQIICLSATVANADELAGWIGQIH 328
D+ + V+DE+H + D RG E I+ QI+ LSATV N +E+A W+
Sbjct: 136 ---DLSLAVIDEIHLIGDNERGGTLEVILTKLKNINAQIVGLSATVGNPEEIANWLN--- 189
Query: 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388
+L+T RPV L +KG ++ + +NY+ S+ K +K S
Sbjct: 190 --AKLVTDEWRPVEL---------------KKGIYLENE--INYINNQDSQKKSFKAVKS 230
Query: 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSI-NAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447
RN+ ++S V G + NS NA+ S+ +
Sbjct: 231 ISRNNLTDLIVDS---VNEKGSCLIFCNSKRNAVGESKKHNL------------------ 269
Query: 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 507
+YL L D +SE L++ + P + + + KGVA HHA
Sbjct: 270 ----------TKYLSKAELNDLNSISEEILSI----LETPTETCKSLSECIKKGVAFHHA 315
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567
G + +EE F+ ++KV+ T TL+AG+N+P R A++ + + + +G I + E+
Sbjct: 316 GLTYQHRKAVEEGFRNKVIKVICCTPTLSAGLNLPCRRAIIRDIRRYSQNGLIDIPKLEI 375
Query: 568 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGA 627
Q GRAGR G+D G +++ + E+ L +E + S+ + + +++L
Sbjct: 376 HQCIGRAGRPGLDPYGEGIILAKNEKDVEKAFLALTGPLENIYSKLSNQKVLRVHILGLI 435
Query: 628 KVMHLSNESD 637
+ + + S+
Sbjct: 436 ATLEIKSTSE 445
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 106/195 (54%), Gaps = 19/195 (9%)
Query: 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216
DF + QR +IE F +G +++VS PT++GKTLIA +A T + + Y PL++L+
Sbjct: 20 DFELYDHQRMAIEQFRKGKNIMVSVPTAAGKTLIAYSAIYETFKKKLKSIYIVPLRSLAM 79
Query: 217 QKFRE---FRETFGDNNVGLLTGDSAIN--REAQILIMTTEILRNMLYQSVGMVSSESGL 271
+K+ E RE + + D + + ++I+T+E ++++ M+
Sbjct: 80 EKYEELSRLRELGMRVKLSIGNYDDTPDFIKRYDVVILTSEKADSLMHHDPYMME----- 134
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIII---YCPKEVQIICLSATVANADELAGWIGQIH 328
+V ++V+DE+H + D RG E +I Y E +II LSATV+NA E+A W+
Sbjct: 135 -EVGLMVIDEIHMIGDEYRGPTLETVITTARYVNPETRIIALSATVSNASEIAEWLN--- 190
Query: 329 GKTELITSSRRPVPL 343
LI SS RPVPL
Sbjct: 191 --ASLIKSSFRPVPL 203
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 54/86 (62%)
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
L GV+ HHAG +SFIE+ F+ +KV+ AT TLAAG+N+PAR ++ +++
Sbjct: 284 LPHGVSFHHAGLSNEQRSFIEKAFRHRKLKVIVATPTLAAGVNLPARLVIVKDVTRYGDL 343
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRG 583
G L++ E+ QM GRAGR G D G
Sbjct: 344 GITYLSNMEVKQMIGRAGRPGYDQYG 369
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta0835 PE=3 SV=1
Length = 674
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 105/198 (53%), Gaps = 25/198 (12%)
Query: 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216
DF++ QR +IE +G +VVVS PT++GKTLIA +A T + Y PL++L+
Sbjct: 20 DFQLYDHQRMAIEQIRKGRNVVVSVPTAAGKTLIAYSAIYETFQRNLKSIYIVPLRSLAM 79
Query: 217 QKFREFRETFGDNNVGLLT----GD----SAINREAQILIMTTEILRNMLYQSVGMVSSE 268
+KF E ++GL GD + +I+T+E ++L+ +++
Sbjct: 80 EKFSELSRL---RDLGLKVKMSIGDYDDSPDFIKRYDAVILTSEKADSLLHHDPYILN-- 134
Query: 269 SGLFDVDVIVLDEVHYLSDISRGTVWE---EIIIYCPKEVQIICLSATVANADELAGWIG 325
DV ++VLDE+H + D SRG E I Y +V+I+ LSATV+NA ELA W+
Sbjct: 135 ----DVGLLVLDEIHTIGDESRGPTLETVASIARYVNPDVRILALSATVSNAMELASWL- 189
Query: 326 QIHGKTELITSSRRPVPL 343
LI S RPVPL
Sbjct: 190 ----DASLIKSDFRPVPL 203
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 80/146 (54%), Gaps = 6/146 (4%)
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
L +GVA HHAG ++FIE F+ +KV+ AT TLAAG+N+PAR ++ +++ +
Sbjct: 284 LPRGVAFHHAGLSNDQRAFIEREFRARRIKVIVATPTLAAGVNLPARLVIVRDITRWGSD 343
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFT 614
G LT+ E+ QM GRAGR G D G ++ Q+ YE A++ L EP+VS
Sbjct: 344 GISYLTNMEIKQMIGRAGRPGYDQYGIGLIYVSSQSSYEAAKDY---LSTDPEPVVSYLG 400
Query: 615 ASYGMVLNLLAGAKVMHLSNESDDMK 640
+ N LA + + SD MK
Sbjct: 401 NEAKVRFNTLAAISMGLARSPSDIMK 426
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 94/181 (51%), Gaps = 19/181 (10%)
Query: 170 AFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR-RIFYTTPLKALSNQKFREFR--ETF 226
L G + ++S PT+SGKTLIAE A V + Q + Y PLKAL+ +KF+EF+ E
Sbjct: 35 GILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKI 94
Query: 227 GDNNVGLLTGDSAINRE----AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEV 282
G V + TGD E I+I T E ++L S + DV ++V DE+
Sbjct: 95 G-LRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHG------SSWIKDVKILVADEI 147
Query: 283 HYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVP 342
H + RG E I+ + + QII LSAT+ N +ELA W+ ELI S RPV
Sbjct: 148 HLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNPEELAEWLN-----AELIVSDWRPVK 202
Query: 343 L 343
L
Sbjct: 203 L 203
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 494 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
AI+G GVA HHAG + +EE F++G++K V AT TL+AGIN PA ++ + +
Sbjct: 292 AIRG---GVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWR 348
Query: 554 RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQF 613
+ G ++ E+ QM GRAGR D G ++V T + E +F E L SQ
Sbjct: 349 YSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQL 408
Query: 614 TASYGMVLNLLA 625
+ + +LA
Sbjct: 409 SNESNLRSQVLA 420
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 101/188 (53%), Gaps = 21/188 (11%)
Query: 164 QRSSIE-AFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREF 222
Q + +E L G +++V+ PT+SGKTLIAE A +AN + Y PLKAL+++K+ EF
Sbjct: 28 QAACVERGLLDGKNLLVAIPTASGKTLIAEMAMHRHIANGGKCLYIVPLKALASEKYEEF 87
Query: 223 RETFGDNNVGLLTGDSAINREA----QILIMTTEILRNMLYQSVGMVSSESGLFDVDVIV 278
VGL TGD +A I++ T+E + ++L + D+ ++V
Sbjct: 88 GNK--GVKVGLSTGDLDRRDDALGKNDIIVATSEKVDSLLRNGARWIP------DITLVV 139
Query: 279 LDEVHYLSDISRGTVWEEIIIYCPKE---VQIICLSATVANADELAGWIGQIHGKTELIT 335
+DE+H + RG E +I + +Q+I LSAT+ N LAGW+ EL+T
Sbjct: 140 IDEIHLIDSPDRGPTLEMVIAKMRSKNPGMQLIGLSATIGNPKVLAGWL-----DAELVT 194
Query: 336 SSRRPVPL 343
SS RPV L
Sbjct: 195 SSWRPVDL 202
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
KG A HHAG +S +EE F++ L+K + +T TLAAG+N+PAR ++ + +A
Sbjct: 297 KGAAFHHAGLSRKERSIVEEAFRKNLLKCISSTPTLAAGLNLPARRVIIRDYLRFSAGEG 356
Query: 560 IQ-LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG----VEPLVSQFT 614
+Q + +E QMAGRAGR +D G VL+ E E ++ V +++ T
Sbjct: 357 MQPIPVSEYRQMAGRAGRPRLDPYGEAVLIAKEAEQVPELFEVYIEAEAEDVHSRIAEPT 416
Query: 615 ASYGMVLNLLA 625
A Y VL+L+A
Sbjct: 417 ALYTHVLSLVA 427
>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus GN=Helq PE=2 SV=2
Length = 1069
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 106/434 (24%), Positives = 177/434 (40%), Gaps = 86/434 (19%)
Query: 176 SVVVSAPTSSGKTLIAEAAAVA-TVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLL 234
+++ S PTS GKTL+AE + + Q+ + P A+ +K +FG +G
Sbjct: 313 NLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQEKISSL-SSFGIE-LGFF 370
Query: 235 TGDSA--------INREAQ--ILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284
+ A I R + + I T E ++ V + S L + ++V+DE+H
Sbjct: 371 VEEYAGSKGRFPPIKRREKKSLYIATIEKAHSL----VNALIETSRLSTLGLVVVDELHM 426
Query: 285 LSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPV 341
+ + SRG + E ++Y K QII +SAT+ N ++L ++ K E TS RPV
Sbjct: 427 IGEGSRGAILEMTLAKVLYTSKTTQIIGMSATLNNVEDLQAFL-----KAEYYTSQFRPV 481
Query: 342 PLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNS 401
L + + + + M L+Y + S M+
Sbjct: 482 ELKEFLKVNDTIYEVDSQAADGMTFSRLLSY------------------KYSEALKKMDP 523
Query: 402 NNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL 461
+ +V + V +VI + F +++ C+ + L
Sbjct: 524 DRLV------------------ALVTEVIPNY---------SCLVFCPSKKNCENVAEML 556
Query: 462 EDCNLLD-------ECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWK 514
C L E E EV +K R + V + + G+A HH+G +
Sbjct: 557 --CKFLSKDYLNHREKEKCEV---IKSLRNIGNGKVCPVLKRTVPFGIAYHHSGLTSEER 611
Query: 515 SFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRA 574
+EE + G++ ++ T TLAAG+N+PAR +L + L N+ QM GRA
Sbjct: 612 KLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVIL----RAPYVANTFLKRNQYKQMVGRA 667
Query: 575 GRRGIDNRGHVVLV 588
GR GID G +L+
Sbjct: 668 GRAGIDTAGESILL 681
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 100/188 (53%), Gaps = 33/188 (17%)
Query: 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQ-RRIFYTTPLKALSNQKFREF--------- 222
+G ++VV+APT SGKT IA A V ++A R FY PLK+++ +K+ F
Sbjct: 42 KGENLVVAAPTGSGKTFIALVAIVNSLARAGGRAFYLVPLKSVAYEKYTSFSILSRMGLK 101
Query: 223 -RETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDE 281
+ + GD G EA ++I T E ++L S + +V V+++DE
Sbjct: 102 LKISVGDFREG--------PPEAPVVIATYEKFDSLLRVSPSLAR------NVSVLIVDE 147
Query: 282 VHYLSDISRGTVWEEII---IYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSR 338
+H +SD RG + E I+ + E Q++ LSATV NA E+A WIG GK ++ SS
Sbjct: 148 IHSVSDPKRGPILESIVSRMLASAGEAQLVGLSATVPNAGEIAEWIG---GK--IVESSW 202
Query: 339 RPVPLTWY 346
RPVPL Y
Sbjct: 203 RPVPLREY 210
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 61/102 (59%)
Query: 487 PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546
P +V E + G+A HHAG P + +EE F+ G VKVV++T TLAAG+N+PAR
Sbjct: 293 PRSVAEELASLIAAGIAYHHAGLPPSLRKTVEEAFRAGAVKVVYSTPTLAAGVNLPARRV 352
Query: 547 VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
V+ S + A R + E QMAGRAGR G+D G ++V
Sbjct: 353 VIDSYYRYEAGFREPIRVAEYKQMAGRAGRPGLDEFGEAIIV 394
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 101/188 (53%), Gaps = 29/188 (15%)
Query: 169 EAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGD 228
+ L G +++ + PT+SGKTL+AE A + ++ + Y PL+AL+++KFR FRE F +
Sbjct: 34 KGLLEGRNLLAAIPTASGKTLLAELAMLKSILAGGKALYIVPLRALASEKFRRFRE-FSE 92
Query: 229 NN--VGLLTGDSAINREA----QILIMTTE----ILRNMLYQSVGMVSSESGLFDVDVIV 278
VG+ TGD + E I++ T+E +LRN ++V M ++ V+V
Sbjct: 93 LGIRVGISTGDYDLRDEGLGVNDIIVATSEKTDSLLRN---ETVWMQ-------EISVVV 142
Query: 279 LDEVHYLSDISRGTVWEEIIIYCPK---EVQIICLSATVANADELAGWIGQIHGKTELIT 335
DEVH + RG E + K QI+ LSATV NADELA W+ + EL+
Sbjct: 143 ADEVHLIDSPDRGPTLEVTLAKLRKMNPSCQILALSATVGNADELAVWL-----EAELVV 197
Query: 336 SSRRPVPL 343
S RP L
Sbjct: 198 SEWRPTEL 205
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560
G A HHAG + +E+ F+ G +K++ +T TLAAG+N+PAR ++ + + ++ +
Sbjct: 305 GTAFHHAGLTTPLRELVEDGFRAGRIKLISSTPTLAAGLNLPARRVIIRNYRRYSSEDGM 364
Query: 561 Q-LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593
Q + E QMAGRAGR +D G VLV Y+
Sbjct: 365 QPIPVLEYKQMAGRAGRPRLDPYGEAVLVAKSYK 398
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 109/446 (24%), Positives = 189/446 (42%), Gaps = 118/446 (26%)
Query: 176 SVVVSAPTSSGKTLIAEAAAVATV--ANQRRIFYTTPLKALSNQKFREFRETFGD---NN 230
+V V APT SGKT+ AE A + + +++ R Y TP++AL+ Q + ++ E F D
Sbjct: 1345 NVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK 1404
Query: 231 VGLLTGDSAINRE----AQILIMTTE---ILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283
V LLTG+++ + + I+I T E IL Q + ++++ V+DEVH
Sbjct: 1405 VVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQ-------RKNVQNINLFVVDEVH 1457
Query: 284 YLSDISRGTVWEEI---IIYCPKEVQ----IICLSATVANADELAGWIGQIHGKTELITS 336
+ G V E I + Y +++ I+ LS++++NA ++A W+G T
Sbjct: 1458 LIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHP 1516
Query: 337 SRRPVPLTWYFS------TKTALL----PLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386
+ RPVPL + T+T LL P+ KH +K + ++
Sbjct: 1517 NVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVP------------ 1564
Query: 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446
SRK + + +I+T+ I+R + H +D++P
Sbjct: 1565 ------SRKQTRLTAIDILTTCAAD---------IQRQR-------FLHCTEKDLIP--- 1599
Query: 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 506
YLE L + + E LL GV H
Sbjct: 1600 -------------YLEK---LSDSTLKET----------------------LLNGVGYLH 1621
Query: 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN- 565
G P+ + +E+LF G ++VV A+ +L G+N+ A ++ + + +G+I +
Sbjct: 1622 EGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVII--MDTQYYNGKIHAYVDY 1679
Query: 566 ---ELFQMAGRAGRRGIDNRGHVVLV 588
++ QM G A R D+ G V++
Sbjct: 1680 PIYDVLQMVGHANRPLQDDEGRCVIM 1705
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 495 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
+K LL G A HHAG + ++ +E+LF ++V+ +T TLA G+N+PA T ++
Sbjct: 774 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 833
Query: 554 RTA-SGR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 590
+ GR +L + ++ QM GRAGR D +G +L+ +
Sbjct: 834 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITS 872
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 122/264 (46%), Gaps = 48/264 (18%)
Query: 119 PAPSWREEFK-WQRVEKLCNEVKEFGNE--MIDVDEL-----ASIYDFRI-----DKFQR 165
P S+R + K ++ V + K FG+E ++ V++L A F+ K R
Sbjct: 431 PDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYR 490
Query: 166 SSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ-----------RRIFYTTPLKAL 214
+++E ++++ APT +GKT +A + + +I Y P+++L
Sbjct: 491 AALET---DENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSL 547
Query: 215 SNQKFREFRE---TFGDNNVGLLTGDSAINRE----AQILIMTTEILRNMLYQSVGMVSS 267
+ F + T+G V LTGD + +E QI++ T E + + G +
Sbjct: 548 VQEMVGSFGKRLATYG-ITVAELTGDHQLCKEEISATQIIVCTPE--KWDIITRKGGERT 604
Query: 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADEL 320
+ L V +I+LDE+H L D RG V E ++ ++V++I LSAT+ N +++
Sbjct: 605 YTQL--VRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDV 661
Query: 321 AGWIGQIHGKTEL-ITSSRRPVPL 343
A ++ K +S RPVPL
Sbjct: 662 ATFLRVDPAKGLFYFDNSFRPVPL 685
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 19/181 (10%)
Query: 170 AFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR-RIFYTTPLKALSNQKFREFR--ETF 226
L+G + +++ PT+SGKTLIAE A V + + + Y PLKAL+ +KF+EF+ E
Sbjct: 35 GILKGENALIAIPTASGKTLIAEIAIVNRLLKEGGKAVYLVPLKALAEEKFKEFKDWEEL 94
Query: 227 GDNNVGLLTGDSAINRE----AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEV 282
G V + TGD E I+I T E ++L S + +V V+V+DE+
Sbjct: 95 G-LKVAMATGDYDSKDEWLGGYDIIIATAEKFDSLLRHG------SSWIRNVKVLVVDEI 147
Query: 283 HYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVP 342
H + RG E II QII LSAT+ N +ELA W+ +LI S RPV
Sbjct: 148 HLIGSRDRGATLEFIITQMLNRAQIIGLSATIGNPEELAEWLN-----AKLIKSDWRPVK 202
Query: 343 L 343
L
Sbjct: 203 L 203
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 83/165 (50%), Gaps = 8/165 (4%)
Query: 465 NLLDECEMSEV-ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR 523
N L + E+ E+ ELA L + E K L GVA HHAG + +EE F++
Sbjct: 263 NFLTKKELRELKELA----ESLEENPTNEKLAKALQGGVAFHHAGLGREERVLVEENFKK 318
Query: 524 GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRG 583
GL+KVV AT TL+AGIN PA ++ + + G ++ E+ QM GRAGR D G
Sbjct: 319 GLIKVVVATPTLSAGINTPAFRVIVRDTWRYSEFGMERIPILEIQQMMGRAGRPKYDEVG 378
Query: 584 HVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS---YGMVLNLLA 625
++V T E + + + E L SQ + G +L L+A
Sbjct: 379 EAIIVSTTEEPSTVMERYIKGKPEKLFSQLSNESILRGQILALIA 423
>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_810 PE=3 SV=1
Length = 690
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 99/185 (53%), Gaps = 21/185 (11%)
Query: 164 QRSSIEAFLRGS--SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFRE 221
QRS+IEA S + +++ PT+SGKTL+ AA+ TV R+ YT PL ++ N+K +E
Sbjct: 26 QRSAIEAGYLESEDNYIIAIPTASGKTLLGIIAALKTVMEGGRVIYTVPLLSIQNEKIKE 85
Query: 222 FRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDE 281
FR+ G+ G R + I +M E ++ S + L +VD++++DE
Sbjct: 86 FRKL---EEHGIRVGKDP--RTSDIAVMVFESFDSLTRFSWNI------LREVDLLIVDE 134
Query: 282 VHYLSDISRGTVWEEIIIYCPK---EVQIICLSATVANADELAGWIGQIHGKTELITSSR 338
H + + +RG V E I V+I+ LSAT++N DE+AGW+ ++
Sbjct: 135 FHMIGEYTRGPVIESAITRARTLNPSVRIVALSATLSNMDEIAGWL-----DARVVEHDY 189
Query: 339 RPVPL 343
RPVPL
Sbjct: 190 RPVPL 194
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 12/159 (7%)
Query: 447 FIFNRRGCDAAVQYLED---CNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK--- 500
F+ RR ++ +L D + D+ S E+A K + P + P LK
Sbjct: 230 FVSTRRFTESLASHLADKISGKIPDDMVESFREVAGKVLEV--PKSRGSPPTSTCLKLAE 287
Query: 501 ----GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
G+A HHAG + IE+ F+ G + ++ AT +L G+N+P+RT V+ ++ T+
Sbjct: 288 CLEAGIAFHHAGLFNRQREIIEDEFRDGNILMITATPSLMYGVNLPSRTVVIRDYTRWTS 347
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 595
G ++ + QM+GRAGR D+ G+ L+ ++ A
Sbjct: 348 QGPRRIPVFDYEQMSGRAGRPQYDDAGYSYLIARSHDEA 386
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 95/183 (51%), Gaps = 19/183 (10%)
Query: 169 EAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE-TFG 227
+ L G +++ + PT+SGKTL+AE A + +V N + Y PL+AL+++KFR F+E +
Sbjct: 34 KGLLEGKNLLAAIPTASGKTLLAELAMLKSVLNGGKALYIVPLRALASEKFRRFQEFSVL 93
Query: 228 DNNVGLLTGDSAINREA----QILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283
VG+ TGD E I++ T+E ++L + ++ V+V DEVH
Sbjct: 94 GMRVGISTGDYDRRDEGLGINDIIVATSEKTDSLLRNETAWMQ------EISVVVADEVH 147
Query: 284 YLSDISRGTVWEEIIIYCPK---EVQIICLSATVANADELAGWIGQIHGKTELITSSRRP 340
+ RG E + + Q++ LSATV NADELA W+ EL+ S RP
Sbjct: 148 LIDSPDRGPTLEITLSKLRRMNPSCQVLALSATVGNADELAAWL-----DAELVLSEWRP 202
Query: 341 VPL 343
L
Sbjct: 203 TDL 205
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 29/209 (13%)
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA-SGR 559
G A HHAG + +E F+ G +K++ +T TLAAG+N+PAR ++ S + ++ SG
Sbjct: 305 GTAFHHAGLTTPLRELVENGFREGRIKIISSTPTLAAGLNLPARRVIIRSYRRYSSDSGM 364
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC----KLLFAGVEPLVSQFTA 615
+ E QMAGRAGR +D G VL+ Y EE K + AG E + S+
Sbjct: 365 QPIPVLEYKQMAGRAGRPRLDPYGEAVLLAKSY---EEFVFLFEKYIEAGAEDIWSKLGT 421
Query: 616 SYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDEL 675
+ ++L+ +SN R+ EE +E +F + SN L+A +
Sbjct: 422 ENALRTHILS-----TISN--------GFARTREELMDFLEATFFAFQYSNFGLSAVVDE 468
Query: 676 C--------KIQKETDVLTSEISDDAIDR 696
C ++K+ D L S + + R
Sbjct: 469 CLDFLRREGMLEKDPDALVSTVFGKLVSR 497
>sp|Q5JGV6|HELS_PYRKO Putative ski2-type helicase OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1332 PE=3 SV=1
Length = 1125
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 93/181 (51%), Gaps = 19/181 (10%)
Query: 170 AFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR-RIFYTTPLKALSNQKFREFRE--TF 226
L G ++V++ PT+SGKTL++E V + ++ + Y PLKAL+ +K+REF+E
Sbjct: 35 GVLEGKNLVLAIPTASGKTLVSEIVMVNKLLSEGGKAVYLVPLKALAEEKYREFKEWEVL 94
Query: 227 GDNNVGLLTGDSAINRE----AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEV 282
G V TGD E I++ T E ++L + DV ++V DEV
Sbjct: 95 G-LRVAATTGDYDSTDEWLGRYDIIVATAEKFDSLLRHGASWIK------DVKLVVADEV 147
Query: 283 HYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVP 342
H + RG E I+ + + QI+ LSATV NA+ELA W+ L+ S RPV
Sbjct: 148 HLIGSYDRGATLEMILTHMLGKAQILALSATVGNAEELAEWL-----DASLVVSDWRPVE 202
Query: 343 L 343
L
Sbjct: 203 L 203
Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 494 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
A+KG GVA HHAG ++ IE+ F+ GL+KV+ AT TL P V S +K
Sbjct: 293 ALKG---GVAFHHAGLSRAERTLIEDAFRNGLIKVITATPTLCM---HPDTYVVTKSGAK 346
Query: 554 RTA---SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ 589
+ + G LT F+ + RR +++G +++++
Sbjct: 347 KVSELTEGDEVLTHTGTFKKVIQPLRR--EHKGRLLVIK 383
Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 536 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
+AGIN+PA ++ + G + E+ QM GRAGR D G ++V
Sbjct: 735 SAGINLPAFRVIIRDTKRYANFGWTDIPVLEIQQMMGRAGRPKYDKVGEAIIV 787
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus
GN=ascc3 PE=3 SV=2
Length = 2211
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 111/433 (25%), Positives = 181/433 (41%), Gaps = 92/433 (21%)
Query: 176 SVVVSAPTSSGKTLIAEAAAVATVANQ---RRIFYTTPLKALSNQKFREFR----ETFGD 228
+V++ APT SGKT+ AE A+ V N+ + Y PLKAL ++ +++ E G
Sbjct: 1353 NVLLGAPTGSGKTVAAE-LAIFRVFNKYPTSKAVYIAPLKALVRERIEDWKVRIEEKLGK 1411
Query: 229 NNVGLLTGDSAINREAQI---LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285
V LTGD + A LI+TT + + +S + S + V ++++DE+H L
Sbjct: 1412 KVVE-LTGDVTPDMRAIAQADLIVTTPEKWDGVSRS---WQNRSYVQKVSILIIDEIHLL 1467
Query: 286 SDISRGTVWEEII-------IYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSR 338
D RG V E I+ + K V+++ LS +ANA +LA W+ S
Sbjct: 1468 GD-ERGPVLEVIVSRTNFISSHTEKPVRVVGLSTALANARDLADWLNINQMGLFNFRPSV 1526
Query: 339 RPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHAD 398
RPVPL + P G+H +++
Sbjct: 1527 RPVPLEVHIQG----FP-----GQHYCPRMA----------------------------- 1548
Query: 399 MNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAV 458
+++K + AIR + + R + L ++ I D
Sbjct: 1549 -------------RMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTSLDLIAFLATEDDPK 1595
Query: 459 QYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK-GVAAHHAGCLPIWKSFI 517
Q+L+ +DE EM+++ VR+ +K L G+ HHAG + +
Sbjct: 1596 QWLK----MDEREMNDI-----------IGTVRDSNLKLTLAFGIGMHHAGLHERDRKTV 1640
Query: 518 EELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR--IQLTSNELFQMAGRAG 575
EELF ++V+ AT TLA G+N PA ++ R + ++ QM GRAG
Sbjct: 1641 EELFVNCKIQVLIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAG 1700
Query: 576 RRGIDNRGHVVLV 588
R D++G V++
Sbjct: 1701 RPQFDDQGKAVIL 1713
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 16/145 (11%)
Query: 480 KRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 539
K+ R L+PD G + HHAG L +S +E LF G +KV+ T TLA G+
Sbjct: 778 KQLRELFPD------------GFSIHHAGMLRQDRSLVENLFSNGHIKVLVCTATLAWGV 825
Query: 540 NMPARTAVLSSLSKRTA--SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEE 597
N+PA V+ A + L ++ Q+ GRAGR D G +++ T ++
Sbjct: 826 NLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITT-HDKLSH 884
Query: 598 CCKLLFAGVEPLVSQFTASYGMVLN 622
LL P+ SQF S LN
Sbjct: 885 YLTLL-TQQNPIESQFLESLADNLN 908
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 118/257 (45%), Gaps = 44/257 (17%)
Query: 125 EEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDF----RIDKFQRSSIE-AFLRGSSVVV 179
EE K E + ++E + D+DE+ + F R+++ Q E A+ ++++
Sbjct: 448 EEVKIPHSEPMPIGIEEKIVYIKDLDEIGQL-AFKGMKRLNRIQSIVFETAYNTNENMLI 506
Query: 180 SAPTSSGKTLIAEAAAVATV----------ANQRRIFYTTPLKALSNQKFREFRETFGDN 229
APT +GKT IA + + ++ +I Y P+KAL+ + F +
Sbjct: 507 CAPTGAGKTNIAMLTVLHEIRQHVQHGVIKKDEFKIVYVAPMKALAAEMTNYFSKRLEPL 566
Query: 230 NVGL--LTGDSAINR----EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283
+ + LTGD +++ Q+L+ T E + +SVG V+ V +++LDEVH
Sbjct: 567 GITVKELTGDMQLSKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQL---VKLLILDEVH 623
Query: 284 YLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANADELAG------WIGQIHGK 330
L + RG V E I+ ++V+ I+ LSAT+ N ++A +IG +
Sbjct: 624 LLHE-DRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFY-- 680
Query: 331 TELITSSRRPVPLTWYF 347
S RPVPL F
Sbjct: 681 ---FDSRFRPVPLGQTF 694
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 96/184 (52%), Gaps = 21/184 (11%)
Query: 169 EAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGD 228
+ L G +++ + PT+SGKTL+AE A + +V + Y PL+AL+++KFR F++ F +
Sbjct: 34 KGLLEGKNLLAAIPTASGKTLLAELAMLKSVLAGGKALYIVPLRALASEKFRRFQD-FSE 92
Query: 229 NN--VGLLTGDSAINREA----QILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEV 282
VG+ TGD E I++ T+E ++L + ++ V+V+DEV
Sbjct: 93 LGIRVGISTGDYDRRDEGLGINDIIVATSEKTDSLLRNETAWMQ------EISVVVVDEV 146
Query: 283 HYLSDISRGTVWEEIIIYCPKE---VQIICLSATVANADELAGWIGQIHGKTELITSSRR 339
H + RG E + K QI+ LSATV NADELA W+ EL+ S R
Sbjct: 147 HLIDSADRGPTLEVTLAKLRKMNPFCQILALSATVGNADELAAWL-----DAELVLSEWR 201
Query: 340 PVPL 343
P L
Sbjct: 202 PTDL 205
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 35/212 (16%)
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA-SGR 559
G A HHAG + +E F+ G VK++ +T TLAAG+N+PAR ++ S + ++ SG
Sbjct: 305 GTAFHHAGLTSPLRELVETGFREGYVKLISSTPTLAAGLNLPARRVIIRSYRRYSSDSGM 364
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF-------AGVEPLVSQ 612
+ E QMAGRAGR +D G VL+ YE +LLF AG E + S+
Sbjct: 365 QPIPVLEYKQMAGRAGRPRLDPYGEAVLLAKSYE------ELLFLFEKYIEAGAEDIWSK 418
Query: 613 FTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAK 672
+ ++L+ +SN R+ EE +E +F Y SN L+
Sbjct: 419 LGTENALRTHVLS-----TISN--------GFARTKEELMDFLEATFFAYQYSNFGLSVV 465
Query: 673 DELC--------KIQKETDVLTSEISDDAIDR 696
+ C +++++D L S + + R
Sbjct: 466 VDECLNFLRQEGMLEQDSDALISTMFGKLVSR 497
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 92/177 (51%), Gaps = 18/177 (10%)
Query: 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGL 233
G SV++ T+SGK+L+AE AAV R Y PLKAL+ +K F G VG+
Sbjct: 39 GRSVLLCTATASGKSLLAEVAAVKAGLEGRMALYAVPLKALAYEKLVHFSYYRGLVKVGV 98
Query: 234 LTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDIS 289
TGD + E ++++T E L ++L + V+V+DE+HYL D
Sbjct: 99 STGDFDSDDRRLHEFDVVVVTYEKLDSLLRHRPNWLGLVG------VVVVDEIHYLGDPR 152
Query: 290 RGTVWEEIII---YCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPL 343
RG V E I+ + + Q I LSATV NA E+A W+G L+ SS RPVPL
Sbjct: 153 RGPVLESIVAKLRHLGLKTQFIGLSATVGNAGEVAAWLG-----ARLVESSWRPVPL 204
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK-RTASG 558
+GVA H+AG + +E+ F+RGL+KVV +T TLAAG+N+PAR V++ + A G
Sbjct: 302 RGVAFHNAGLELEVRRLVEDGFRRGLLKVVVSTTTLAAGVNLPARRVVVADYERFDPALG 361
Query: 559 RIQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
R ++ E QMAGRAGR G+D G VLV
Sbjct: 362 REEIPVLEYRQMAGRAGRPGLDPYGEAVLV 391
>sp|Q54XN7|Y8827_DICDI Uncharacterized helicase DDB_G0278827 OS=Dictyostelium discoideum
GN=DDB_G0278827 PE=3 SV=1
Length = 1816
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 113/249 (45%), Gaps = 63/249 (25%)
Query: 428 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL--------EDCNLLDECEMSEVELAL 479
++ + + L+ +D+LPA++F FNR C Q + + N+++E +++L +
Sbjct: 1146 EITNIVLELQKQDLLPALFFSFNRSLCSRLAQRVYNDITHRNTNPNIIEE--KKQLDLVI 1203
Query: 480 KRFR-------------------------------ILYPD------------AVREPAIK 496
+RF+ L P ++P
Sbjct: 1204 ERFQKSLGRALADLEPNDPEKMELERLKAKRASLDYLKPQFGNLLSSDIDEKVKKDPLAP 1263
Query: 497 GLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 556
L +G+AAHH GC + +E LF+ ++VVFAT TLA G+N PA+++V S
Sbjct: 1264 ALTQGIAAHHGGCDKNYLRNVEYLFRSKKIQVVFATSTLAVGVNAPAKSSVFLGDSPYLN 1323
Query: 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616
LTS Q AGRAGRRG DN G+V+ V P ++ +LL + + ++ S
Sbjct: 1324 V----LTSK---QCAGRAGRRGFDNYGNVIFVGLP---KQKINRLLNSRLSNIIGNSVVS 1373
Query: 617 YGMVLNLLA 625
+ L+L++
Sbjct: 1374 PSLCLSLVS 1382
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 23/211 (10%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAA--AVATVANQRRIFYTTPLKALS 215
F+ D +Q ++ + S ++ A TSSGKT I+ + +N + + P KAL
Sbjct: 816 FKPDAWQVELLDIVDKRESALICASTSSGKTFISFYCFEQILKESNDGIVVFVCPTKALV 875
Query: 216 NQKFREFRETFGDNN------------VGLLTGDSAINRE-AQILIMTTEILRNMLYQSV 262
NQ + E + N VG+ T D +N E QILI + L +L+ S+
Sbjct: 876 NQMYAEVLGRYDKNYQAINHRPSNHKMVGVFTRDFRLNIETCQILITVPQCLE-ILFLSI 934
Query: 263 GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAG 322
+ + I+ DEVH ++ G +WE ++++ P + LSAT+ N +
Sbjct: 935 ---MNTHFIQRCRYIIFDEVHQIASSVDGAIWERLLVFNP--APFLALSATLGNLTDFHN 989
Query: 323 WIGQI--HGKTELITSSRRPVPLTWYFSTKT 351
++ +I + K LI R L +F +T
Sbjct: 990 FLKKIDPNRKVSLIHYQSRFNDLKNFFLCQT 1020
>sp|Q58524|HELS_METJA Putative ski2-type helicase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1124 PE=3 SV=1
Length = 1195
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 111/212 (52%), Gaps = 34/212 (16%)
Query: 152 LASIYDFRIDKFQRSSIEAFLRG-----SSVVVSAPTSSGKTLIAEAAAVATV------- 199
L + DF I + + +A RG + ++S PT+SGKTLI E A + +
Sbjct: 5 LEILKDFGIVELRPPQKKALERGLLDKNKNFLISIPTASGKTLIGEMALINHLLDGNKNP 64
Query: 200 ANQRRIFYTTPLKALSNQKFREFR---ETFGDNNVGLLTGDSAINREA---QILIMTTEI 253
N++ IF PLKAL+++K+ EF+ E +G + L GD + + ++I T E
Sbjct: 65 TNKKGIF-IVPLKALASEKYEEFKSKYERYG-LRIALSIGDYDEDEDLSKYHLIITTAEK 122
Query: 254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKE--VQIICLS 311
L ++ + ++ DV V+V+DE+H ++D +RG E I++ KE VQII LS
Sbjct: 123 LDSLWRHKIDWIN------DVSVVVVDEIHLINDETRGGTLE-ILLTKLKEFNVQIIGLS 175
Query: 312 ATVANADELAGWIGQIHGKTELITSSRRPVPL 343
AT+ N DELA W+ ELI RPV L
Sbjct: 176 ATIGNPDELAEWLN-----AELIVDDWRPVEL 202
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%)
Query: 536 AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 595
+AG+N+P R A++ L++ T G + E+ Q GRAGR G+D G ++V
Sbjct: 839 SAGLNLPCRRAIVKDLTRFTNKGMRYIPIMEIQQCIGRAGRPGLDPYGEGIIVAKNDRDY 898
Query: 596 EECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESD 637
+ L EP+ S+ + + LL + +E D
Sbjct: 899 LRAYQALTQKPEPIYSKLSNQAVLRTQLLGLIATGEIRDEYD 940
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
+L G A HHAG + +E+ F++ L+KV+ T TL + A T +L R +
Sbjct: 300 ILNGSAFHHAGLTYQHRKIVEDAFRKRLIKVICCTPTLC----LNANTEILQESGFRKIT 355
Query: 558 GRIQLTSNE-LFQMAGR 573
+L +E +F + G+
Sbjct: 356 ---ELNKDEKVFALCGK 369
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens
GN=ASCC3 PE=1 SV=3
Length = 2202
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 121/495 (24%), Positives = 200/495 (40%), Gaps = 102/495 (20%)
Query: 159 RIDKFQRSSIE-AFLRGSSVVVSAPTSSGKTLIAEAAAVATV----------ANQRRIFY 207
R+++ Q E A+ ++++ APT +GKT IA + + N+ +I Y
Sbjct: 476 RLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVY 535
Query: 208 TTPLKALSNQKFREFRETFGDNNVGL--LTGDSAINR----EAQILIMTTEILRNMLYQS 261
P+KAL+ + F + + LTGD +++ Q+L+ T E + +S
Sbjct: 536 VAPMKALAAEMTDYFSRRLEPLGIIVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKS 595
Query: 262 VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATV 314
VG V+ V +++LDEVH L + RG V E I+ ++V+ I+ LSAT+
Sbjct: 596 VGDVALSQ---IVRLLILDEVHLLHE-DRGPVLESIVARTLRQVESTQSMIRILGLSATL 651
Query: 315 ANADELAGWIGQIHGKTELITSSR-RPVPLTWYF-STKTALLPLLDEKGKHMNRKLSLNY 372
N ++A ++ R RPVPL F K A N+ LN
Sbjct: 652 PNYLDVATFLHVNPYIGLFFFDGRFRPVPLGQTFLGIKCA------------NKMQQLNN 699
Query: 373 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 432
+ E N K +V ++ + +++ I R+
Sbjct: 700 MDEVCYE------------NVLKQVKAGHQVMVFVHARNATVRTAMSLIERA-------- 739
Query: 433 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR---FRILYPDA 489
++ +P F F +G D ++E ++ R R L+PD
Sbjct: 740 ----KNCGHIP---FFFPTQGHDYV--------------LAEKQVQRSRNKQVRELFPD- 777
Query: 490 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549
G + HHAG L ++ +E LF G +KV+ T TLA G+N+PA ++
Sbjct: 778 -----------GFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIK 826
Query: 550 SLSKRTA--SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
A + L ++ Q+ GRAGR D G +++ T ++ LL
Sbjct: 827 GTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITT-HDKLSHYLTLL-TQRN 884
Query: 608 PLVSQFTASYGMVLN 622
P+ SQF S LN
Sbjct: 885 PIESQFLESLADNLN 899
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 489 AVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547
VR+ +K L G+ HHAG + +EELF V+V+ AT TLA G+N PA +
Sbjct: 1602 TVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVI 1661
Query: 548 LSSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
+ R + ++ QM GRAGR D++G V++
Sbjct: 1662 IKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVIL 1704
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 31/189 (16%)
Query: 176 SVVVSAPTSSGKTLIAEAAAVATVANQ---RRIFYTTPLKALSNQKFREFR----ETFGD 228
+V++ APT SGKT+ AE A + V N+ + Y PLKAL ++ +++ E G
Sbjct: 1344 NVLLGAPTGSGKTVAAELA-IFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGK 1402
Query: 229 NNV---GLLTGDSAINREAQILIMTTE----ILRNMLYQSVGMVSSESGLFDVDVIVLDE 281
+ G +T D +A +++ T E + R+ +Q+ V V ++++DE
Sbjct: 1403 KVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRS--WQNRNYVQQ------VTILIIDE 1454
Query: 282 VHYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
+H L + RG V E I+ + K V+I+ LS +ANA +LA W+
Sbjct: 1455 IHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNF 1513
Query: 335 TSSRRPVPL 343
S RPVPL
Sbjct: 1514 RPSVRPVPL 1522
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 100/192 (52%), Gaps = 26/192 (13%)
Query: 164 QRSSIE-AFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREF 222
Q +IE L +++ + PT+SGKTL+AE A + + + Y PL+AL+++KF F
Sbjct: 28 QAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAIREGGKALYIVPLRALASEKFERF 87
Query: 223 RE--TFGDNNVGLLTGDSAINREA------QILIMTTEILRNMLYQSVGMVSSESGLFDV 274
+E FG VG+ TGD ++ A I++ T+E ++L S + ++
Sbjct: 88 KELAPFG-IKVGISTGD--LDSRADWLGVNDIIVATSEKTDSLLRNGT------SWMDEI 138
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPK---EVQIICLSATVANADELAGWIGQIHGKT 331
+V+DE+H L +RG E I + +VQ++ LSATV NA E+A W+G
Sbjct: 139 TTVVVDEIHLLDSKNRGPTLEVTITKLMRLNPDVQVVALSATVGNAREMADWLG-----A 193
Query: 332 ELITSSRRPVPL 343
L+ S RP L
Sbjct: 194 ALVLSEWRPTDL 205
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
KGVA HHAG + +E F++ L+KV+ +T TLAAG+N+PAR ++ S + ++
Sbjct: 304 KGVAFHHAGLNSNHRKLVENGFRQNLIKVISSTPTLAAGLNLPARRVIIRSYRRFDSNFG 363
Query: 560 IQ-LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593
+Q + E QMAGRAGR +D G VL+ Y+
Sbjct: 364 MQPIPVLEYKQMAGRAGRPHLDPYGESVLLAKTYD 398
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
Length = 2237
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 98/446 (21%), Positives = 176/446 (39%), Gaps = 86/446 (19%)
Query: 170 AFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR------------RIFYTTPLKALSNQ 217
AF +++++SAPTSSGKT +A + + R +I Y P+K+L +
Sbjct: 563 AFKTDNNLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSLVQE 622
Query: 218 KFREFRETFGDNNVGL--LTGDSAINR----EAQILIMTTEILRNMLYQSVGMVSSESGL 271
F + + + LTGD ++ E QI++ T E + +S ++
Sbjct: 623 MVGNFSKRLKSYGIVVNELTGDQSLTNKQISETQIIVTTPEKWDIITRKSGDRAYTQL-- 680
Query: 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
V +I++DE+H L D RG V E I+ + + + + L G +
Sbjct: 681 --VKLIIIDEIHLLHD-ERGPVLECIV------ARTLRMIESTQQMVRLVGLSATLPNYE 731
Query: 332 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391
++ T R +YF + +PL + Y+ +S +K +
Sbjct: 732 DVATFLRVEPDGVFYFDSSYRPIPLEQQ------------YIGISDRGIKQLQ------- 772
Query: 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451
+ D+ + G HQ+ + F+ +R
Sbjct: 773 ---RCNDITFTKVSERVGDHQI-------------------------------LIFVHSR 798
Query: 452 RGCDAAVQYLEDCNLLDECEMSEVELALKR--FRILYPDAVREPAIKGLLK-GVAAHHAG 508
R + L D + D+ + R R ++ +K LL G+ HHAG
Sbjct: 799 RETAKTGKDLRDRAVEDQSIDRYIRDPASREILRATASKQIQNAELKDLLPYGIGIHHAG 858
Query: 509 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS-KRTASGRIQLTSNEL 567
+S +E+LF ++V+ +T TLA G+N+PA T ++ G +L+ ++
Sbjct: 859 LSRSDRSLVEDLFGDNRIQVLISTATLAWGVNLPAHTVIIKGTQIYNPEKGWCELSPLDV 918
Query: 568 FQMAGRAGRRGIDNRGHVVLVQTPYE 593
QM GRAGR D G +++ + +E
Sbjct: 919 TQMLGRAGRPPFDKEGEGIIITSQHE 944
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 94/189 (49%), Gaps = 31/189 (16%)
Query: 179 VSAPTSSGKTLIAEAAAVATVAN--QRRIFYTTPLKALSNQKFREFRETFG-DNNVGL-- 233
+SAPT+SGKT+ AE A + + ++ Y P++ L++ + +++ FG + GL
Sbjct: 1418 ISAPTNSGKTVCAEIALIRCFKQNPKAKVVYLAPMQDLASVRLKDWSNKFGVKSPFGLVV 1477
Query: 234 --LTGDSAINRE----AQILIMTTE---ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284
LTGD+ + + + I++ E IL Q + S ++++++DE+H
Sbjct: 1478 SDLTGDAVTDNKILDRSNIIVTNCEKWDILSRKWKQRKALQS-------INLLIVDELHL 1530
Query: 285 LSDISRGTVWEEIII----YCPKE----VQIICLSATVANADELAGWIGQIHGKTELITS 336
+ T+ EI++ Y + +++I LS+++ANA +L WIG
Sbjct: 1531 IGGEYGPTM--EIVVSRMRYISTQTGNALRVIALSSSIANARDLVLWIGATPQTCYNFHP 1588
Query: 337 SRRPVPLTW 345
+ RP+P+ +
Sbjct: 1589 NVRPIPVEY 1597
Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 496 KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI-NMPARTAVL--SSLS 552
+ L GVA +H G + +E LF+ G ++V+ AT ++A + N+ A+ V+ + L
Sbjct: 1684 QSLQMGVAFYHDGLTERERRVVEILFRSGSIRVLIATHSVAWLLDNVFAQLVVIMGTQLY 1743
Query: 553 KRTASGRIQLTSNELFQMAGRAGRR 577
+ I N++ QM GRAG++
Sbjct: 1744 QGKDIRYIDYPINDILQMIGRAGKQ 1768
>sp|Q9P7T8|YIW2_SCHPO Uncharacterized helicase C694.02 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC694.02 PE=3 SV=1
Length = 1717
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 489 AVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548
AV E + L +G+ HH+G ++ +E LF+ G + VV AT TL+ GINMP RT V
Sbjct: 1212 AVPEWYVDALYRGIGIHHSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVF 1271
Query: 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 608
S +QL + Q AGRAGRRG D GHV + P + +LL +
Sbjct: 1272 LGDS-------LQLNALNFHQAAGRAGRRGFDLLGHVGFLGVPL---HKIYRLLTTKLWD 1321
Query: 609 LVSQFTASYGMVLNL 623
+ QF + +VL L
Sbjct: 1322 IQGQFPLTTSLVLQL 1336
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 16/182 (8%)
Query: 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRR--IFYTTPLKALS 215
F D++QR +++ R SV V APTSSGKT I+ A + + + Y P KAL
Sbjct: 734 FDPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVAPTKALV 793
Query: 216 NQ-------KFREFRETFGDNNVGLLTGDSAINR--EAQILIMTTEILRNMLYQSVGMVS 266
NQ +F + G + T D IN Q+LI +L++ML Q
Sbjct: 794 NQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITVPHVLQSMLLQP---AL 850
Query: 267 SESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326
+ + + I+ DE+H + + G V E++++ P I+ LSATV N E W+
Sbjct: 851 ANAWCPKIRRIIFDEIHCIGQMEDGLVEEQLLLLAP--CPIVALSATVGNPQEFQVWLSA 908
Query: 327 IH 328
+
Sbjct: 909 LQ 910
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 130/271 (47%), Gaps = 46/271 (16%)
Query: 152 LASIYDFR-IDKFQRSSIEAFLR-GSSVVVSAPTSSGKTLIAEAA---AVATVANQRRIF 206
+ SIY F+ + Q + + V +PT SGKT++AE A A T ++I
Sbjct: 1131 IESIYPFKYFNPMQTMTFYTLYNTNENAFVGSPTGSGKTIVAELAIWHAFKTFPG-KKIV 1189
Query: 207 YTTPLKALSNQKFREFRETF----GDNNVGLLTGDSAIN----REAQILIMTTE----IL 254
Y P+KAL ++ ++R+ GD V L TGDS + +A I+I T E I
Sbjct: 1190 YIAPMKALVRERVDDWRKKITPVTGDKVVEL-TGDSLPDPKDVHDATIVITTPEKFDGIS 1248
Query: 255 RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIII-------YCPKEVQI 307
RN +Q+ V DV +I++DE+H L+ RG + E I+ + V++
Sbjct: 1249 RN--WQTRKFVQ------DVSLIIMDEIHLLAS-DRGPILEMIVSRMNYISSQTKQPVRL 1299
Query: 308 ICLSATVANADELAGWIG-QIHGKTELITSSRRPVPLTWY---FSTKTALLPLLDEKGKH 363
+ +S V+NA ++AGW+G + HG SS RPVPL Y F A PL+ K
Sbjct: 1300 LGMSTAVSNAYDMAGWLGVKDHGLYNF-PSSVRPVPLKMYIDGFPDNLAFCPLM----KT 1354
Query: 364 MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394
MN+ + + Q S KP + RR +R
Sbjct: 1355 MNKPVFMAIKQHSPD--KPALIFVASRRQTR 1383
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 19/156 (12%)
Query: 443 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRIL--------YPDAVREPA 494
PA+ F+ +RR L +L+ C M + +RF + Y V +
Sbjct: 1371 PALIFVASRRQTR-----LTALDLIHLCGMEDNP---RRFLNIDDEEELQYYLSQVTDDT 1422
Query: 495 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
+K L+ G+ HHAG + +S +LFQ+ ++++ AT TLA G+N+PA ++
Sbjct: 1423 LKLSLQFGIGLHHAGLVQKDRSISHQLFQKNKIQILIATSTLAWGVNLPAHLVIIKGTQF 1482
Query: 554 RTAS--GRIQLTSNELFQMAGRAGRRGIDNRGHVVL 587
A G + ++ QM GRAGR D G ++
Sbjct: 1483 FDAKIEGYRDMDLTDILQMMGRAGRPAYDTTGTAIV 1518
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 90/187 (48%), Gaps = 38/187 (20%)
Query: 170 AFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---------------NQRRIFYTTPLKAL 214
A+ ++++ APT +GKT IA + T+ + ++ Y PLKAL
Sbjct: 299 AYKTNENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQYDDFKVIYVAPLKAL 358
Query: 215 SNQKFREFRETFGDNNVGL--LTGDSAINR----EAQILIMTTEILRNMLYQSVG---MV 265
+ + +F + N+ + LTGD + + Q+++ T E + ++ G +V
Sbjct: 359 AAEIVDKFSKKLAPFNIQVRELTGDMQLTKAEILATQVIVTTPEKWDVVTRKANGDNDLV 418
Query: 266 SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANAD 318
S V ++++DEVH L + RG+V E ++ ++V+ II LSAT+ N
Sbjct: 419 SK------VKLLIIDEVHLLHE-DRGSVIETLVARTLRQVESSQSMIRIIGLSATLPNFM 471
Query: 319 ELAGWIG 325
++A ++G
Sbjct: 472 DVADFLG 478
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL--SSLSKRTASG 558
G HHAG ++ E++F+ G +KV+ T TLA G+N+PA ++ + + G
Sbjct: 594 GFGIHHAGMARSDRNLTEKMFKDGAIKVLCCTATLAWGVNLPADCVIIKGTQVYDSKKGG 653
Query: 559 RIQLTSNELFQM 570
I L +++ Q+
Sbjct: 654 FIDLGISDVIQI 665
>sp|Q5H9U9|DDX6L_HUMAN Probable ATP-dependent RNA helicase DDX60-like OS=Homo sapiens
GN=DDX60L PE=2 SV=2
Length = 1706
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 73/139 (52%), Gaps = 16/139 (11%)
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+G+ HH+ K F+E LF +GL++VV ATETLA GI+MP ++ V A
Sbjct: 1243 RGIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALGIHMPCKSVVF-------AQDS 1295
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
+ L + QM+GRAGRRG D G+V P + +LL + V L QF S +
Sbjct: 1296 VYLDALNYRQMSGRAGRRGQDLLGNVYFFDIPLPKIK---RLLASSVPELRGQFPLSITL 1352
Query: 620 VLNLLAGAKVMHLSNESDD 638
VL L M L+++ DD
Sbjct: 1353 VLRL------MLLASKGDD 1365
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 19/184 (10%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAA--VATVANQRRIFYTTPLK 212
+ DF + +Q+ ++ + S V+ APTSSGKT + V ++ + Y P K
Sbjct: 739 VQDFIPNAWQQELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLRESDVGVVVYVAPAK 798
Query: 213 ALSNQKFREFRETF------GDNNVGLLTGDSAIN-REAQILIMTTEILRNMLYQSVGMV 265
+L Q F G G T D N Q+LI E +L
Sbjct: 799 SLVGQVAATVENRFTKTLPAGRTLCGAFTRDYCHNVLNCQVLITVPECFEILLLAP---- 854
Query: 266 SSESGLFDVDVIVLDEVHYLSDISRGTVWE--EIIIYCPKEVQIICLSATVANADELAGW 323
+ + + ++ DEVHYL WE +II CP + LSAT+ N + L W
Sbjct: 855 HRQKWVERIRYVIFDEVHYLGREVGAKFWELLLVIIRCP----FLVLSATINNPNLLTKW 910
Query: 324 IGQI 327
+ +
Sbjct: 911 LQSV 914
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 100/191 (52%), Gaps = 23/191 (12%)
Query: 164 QRSSIEA-FLRGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSNQKFRE 221
Q +I A L G ++++ + T+SGKTL+AE AAV V N ++ PLKAL+ +K +
Sbjct: 29 QEEAIRAGLLNGENILMVSATASGKTLLAEVAAVNNVLVNDKKSLVAVPLKALAFEKLND 88
Query: 222 FRETFGDNNVGLLTGDSAINREAQ------ILIMTTEILRNMLYQSVGMVSSESGLFDVD 275
F T+ + + + N E + ++I T E L ++L S +++V
Sbjct: 89 F-NTYSELGIRVAASTGDYNSEDKWLGSYDVIITTYEKLDSLLRL------KPSWIWNVG 141
Query: 276 VIVLDEVHYLSDISRGTVWEEIII---YCPKEVQIICLSATVANADELAGWIGQIHGKTE 332
+++DE+H+++D RG + E I+ QII LSAT+ N +ELA W+ +
Sbjct: 142 QLIIDEIHFINDDERGPIIESIVAKLRMLNLNPQIIGLSATIGNPEELANWL-----NAK 196
Query: 333 LITSSRRPVPL 343
L+ S RPV L
Sbjct: 197 LVKSDWRPVSL 207
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Query: 495 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553
+ GL+K GV+ HHAG + IEE F+RG+++V+ +T TLAAG+N+PAR +++ +
Sbjct: 302 LTGLIKCGVSFHHAGLELEVRRVIEEGFRRGVLRVLASTTTLAAGVNLPARRVIVNEYRR 361
Query: 554 -RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
G I++ E QMAGRAGR G+D G +++
Sbjct: 362 YEPGYGFIEIPVMEYKQMAGRAGRPGLDPYGEAIII 397
>sp|Q09475|YP93_CAEEL Uncharacterized helicase C28H8.3 OS=Caenorhabditis elegans
GN=C28H8.3 PE=3 SV=2
Length = 1714
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 120/255 (47%), Gaps = 32/255 (12%)
Query: 111 FEVSSDSSPAPSWREEFKWQRVEKLCNEVK---EFGNEMIDVDELAS----IYDFRIDKF 163
FE + S P+ E K +++ N V ++G E+ID+ + F D +
Sbjct: 733 FEAPAGSKPS----SEAKQKKLNLGINMVYYQLQYGGELIDIQSDPKKDDRVSGFAPDGW 788
Query: 164 QRSSIEAFLRGSSVVVSAPTSSGKTLIAEAA--AVATVANQRRIFYTTPLKALSNQ---- 217
QR +++ RG+S ++ APTS+GKT ++ V ++ + Y P KAL NQ
Sbjct: 789 QRKMLDSVDRGNSALIIAPTSAGKTFVSYYCIEKVLRSSDNDVVVYVAPSKALINQVCGS 848
Query: 218 ---KFREFRETFGDNNVGLLTGDSAIN-REAQILIMTTEILRNMLYQSVGMVSSESGLFD 273
+FR G + G LT + + N + Q+LI E L+ ++ V + +
Sbjct: 849 VYARFRNKSMKRGISLFGTLTQEYSQNAMQCQVLITVPECLQELMLSRTPAV--QKFVSH 906
Query: 274 VDVIVLDEVHYLSDISRGTVWEE--IIIYCPKEVQIICLSATVANADELAGWIGQIHGKT 331
+ +V DEVH + +WE+ ++I CP + LSAT+ NA++L W ++
Sbjct: 907 IKYVVFDEVHSIGASEESHIWEQLLLLIQCP----FLALSATIGNANKLHEW---LNSSE 959
Query: 332 ELITSSRRPVPLTWY 346
+ ++ +R V L Y
Sbjct: 960 QAKSAGKRKVELINY 974
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 495 IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554
+K +G+ HHAG + + +E LF+ G + V+F+T TL+ G+NMP +T +
Sbjct: 1275 LKLFERGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTLSLGVNMPCKTVMF------ 1328
Query: 555 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 614
+QLT QM+GRAGRRG D+ G+V+ + P + +LL A + L
Sbjct: 1329 -GVDTLQLTPLLYRQMSGRAGRRGFDHSGNVIFMSIP---TSKVRRLLTASLSNLQGNPP 1384
Query: 615 ASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 659
+ +L L A + NE + R+ A+ L+E SF
Sbjct: 1385 FTVLFLLRLFAYVHQQDILNEEGQKVSTMKQRAF-AAKSLLEHSF 1428
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 91/188 (48%), Gaps = 24/188 (12%)
Query: 169 EAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE---- 224
+ L G +++ + PT+SGKTL+AE A + ++A + Y PLKAL+++K+ F E
Sbjct: 34 QGLLDGKNLLAAIPTASGKTLLAEMAMLKSIAEGGKAIYIVPLKALASEKYDRFLEFSKL 93
Query: 225 --TFGDNNVGLLTGD----SAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIV 278
VG+ TGD E I++ T+E ++L +S S V+V
Sbjct: 94 PIKPDGVKVGIATGDFDSRDEYLGEKDIIVATSEKTDSLLRNGASWLSGLS------VVV 147
Query: 279 LDEVHYLSDISRGTVWEEIIIYCPK---EVQIICLSATVANADELAGWIGQIHGKTELIT 335
DEVH + +RG E + K +QI+ LSAT+ NA LA W+ L+
Sbjct: 148 ADEVHLIDSPNRGPTLEVTLAKLRKINVNLQILALSATIGNAKALAKWM-----DAALVQ 202
Query: 336 SSRRPVPL 343
S RP L
Sbjct: 203 SEWRPTTL 210
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-GR 559
GVA HHAG + +E+ F++ ++KV+ T TLAAG+N+PAR ++ + + G
Sbjct: 310 GVAFHHAGLKGEHRRIVEDGFRQNILKVIACTPTLAAGLNLPARRVIIRDYKRFDVNYGS 369
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593
+ + E QMAGRAGR +D G VL+ Y+
Sbjct: 370 VPIPVLEYKQMAGRAGRPRLDPYGEAVLIAKNYD 403
>sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1401 PE=3 SV=1
Length = 808
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 95/187 (50%), Gaps = 12/187 (6%)
Query: 164 QRSSIEA-FLRGSSVVVSAPTSSGKTLIAEAAAVAT-VANQRRIFYTTPLKALSNQKFRE 221
Q S++A L G +++ + TSSGKTLI E A + + ++ + PL AL+NQK+ E
Sbjct: 216 QTLSVKAGLLNGDDLLIISATSSGKTLIGELAGIKNLIKTGKKFLFLVPLVALANQKYLE 275
Query: 222 FRETFGD--NNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVL 279
F+E + V L G I ++ + + Y+ + + L D+ +V+
Sbjct: 276 FKERYEKLGFKVSLRVGLGRIGKKVDVETSLDADIIVGTYEGIDYLIRTKRLKDIGTVVI 335
Query: 280 DEVHYLSDISRGTVWEEII---IYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 336
DE+H L+ RG + +I + KE Q I LSAT+ N ELA Q++ K L+
Sbjct: 336 DEIHSLNLEERGARLDGLIGRLRFLFKEAQKIYLSATIGNPKELA---KQLNAK--LVLY 390
Query: 337 SRRPVPL 343
+ RPVPL
Sbjct: 391 NGRPVPL 397
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 500 KGVAA--HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557
KG+ A +H G I + +E+ F ++ V T L+AG++ PA T +L SL A
Sbjct: 454 KGIKAEFYHGGMEYIKRRKVEDDFANQKIQCVVTTAALSAGVDFPASTVILESL----AM 509
Query: 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 588
G L E QM GRAGR+G+ G V L+
Sbjct: 510 GADWLNPAEFQQMCGRAGRKGMHEIGKVYLL 540
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
Length = 2142
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 118/490 (24%), Positives = 204/490 (41%), Gaps = 103/490 (21%)
Query: 176 SVVVSAPTSSGKTLIAEAAAVATV-----------ANQRRIFYTTPLKALSNQKFREFRE 224
++++ APT +GKT +A + + A +I Y P+K+L + F
Sbjct: 498 NMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFGR 557
Query: 225 TFGDNNVGL--LTGDSAINRE----AQILIMTTEILRNMLYQSVGMVSSESG----LFDV 274
N+ + LTGD + RE Q+++ T E +++ + G + V
Sbjct: 558 RLACYNLTVSELTGDHQLTREQIAATQVIVCTPE--------KWDIITRKGGERTFVSLV 609
Query: 275 DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELI 334
++++DE+H L D RG V E + ++ T+ N I
Sbjct: 610 RLVIIDEIHLLHD-ERGPVLEAL------------VARTIRN-----------------I 639
Query: 335 TSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTS-EVKPYKDGGSRRRNS 393
+++ V L +A LP NY ++T VKP K G NS
Sbjct: 640 ETTQEEVRLVGL----SATLP---------------NYQDVATFLRVKPDK-GLFYFDNS 679
Query: 394 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI---DTLWHLRSRDMLPAIWFIFN 450
+ S Q + A++R QV I T+ H +L F+ +
Sbjct: 680 YRPV---------SLEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVL---VFVHS 727
Query: 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDA--VREPAIKGLLK-GVAAHHA 507
R+ + + D L + S ++ +L +A V+ +K LL G A HHA
Sbjct: 728 RKETGKTARAVRDMCLEQDTLGSFLKEGSASMEVLRTEAEQVKNTELKELLPYGFAIHHA 787
Query: 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS-KRTASGR-IQLTSN 565
G + ++ +E+LF ++V+ +T TLA G+N+PA T ++ GR ++L++
Sbjct: 788 GMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELSAL 847
Query: 566 ELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL-L 624
++ QM GRAGR D +G +L+ T + + LL + P+ SQF + +LN +
Sbjct: 848 DVLQMLGRAGRPQYDTKGEGILI-TNHSELQFYLSLLNQQL-PIESQFISKLPDMLNAEI 905
Query: 625 AGAKVMHLSN 634
V HL +
Sbjct: 906 VLGTVQHLQD 915
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 94/219 (42%), Gaps = 36/219 (16%)
Query: 154 SIYDFRIDKFQRSSIEAFL----RGSSVVVSAPTSSGKTLIAEAAAVATVANQR--RIFY 207
S Y R +F + F +V V APT SGK IAE A + Q R Y
Sbjct: 1319 SFYSQRFPQFNPIQTQVFNAVYNSDENVFVGAPTGSGKMTIAEFAIMRLFTTQSDARCVY 1378
Query: 208 TTPLKALSNQKFREFRETFG--DNNVGLLTGDSAIN----REAQILIMTTE---ILRNML 258
+AL++ F ++ FG D V LTG++ + + Q++I T + +L
Sbjct: 1379 LVSEEALADLVFADWHSKFGSLDIKVVKLTGETGTDLKLIAKGQLVITTADKWDVLSRRW 1438
Query: 259 YQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP----------KEVQII 308
Q + V++ ++DE+ + G V E I C K+++I+
Sbjct: 1439 KQ-------RKNVQLVNLFIVDELQLVGG-EEGPVLE---IVCSRMRYISSQIEKQIRIV 1487
Query: 309 CLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYF 347
LSA++ +A ++A W+G T S RP+PL +
Sbjct: 1488 ALSASLTDARDVAQWLGCNPNATFNFHPSVRPIPLELHI 1526
>sp|Q8IY21|DDX60_HUMAN Probable ATP-dependent RNA helicase DDX60 OS=Homo sapiens GN=DDX60
PE=1 SV=3
Length = 1712
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 16/139 (11%)
Query: 500 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 559
+G+ HH+ K +E LF++G ++VV AT TLA G+NMP ++ V A
Sbjct: 1259 RGIGYHHSAMSFKEKQLVEILFRKGYLRVVTATGTLALGVNMPCKSVVF-------AQNS 1311
Query: 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619
+ L + QM+GRAGRRG D G V P+ + KL+ + V L F S +
Sbjct: 1312 VYLDALNYRQMSGRAGRRGQDLMGDVYFFDIPF---PKIGKLIKSNVPELRGHFPLSITL 1368
Query: 620 VLNLLAGAKVMHLSNESDD 638
VL L M L+++ DD
Sbjct: 1369 VLRL------MLLASKGDD 1381
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/329 (21%), Positives = 129/329 (39%), Gaps = 57/329 (17%)
Query: 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAA--AVATVANQRRIFYTTPLK 212
+ DF D +QR ++ + S V+ APTSSGKT + V ++ + Y P K
Sbjct: 759 VQDFIPDTWQRELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLKESDDGVVVYVAPTK 818
Query: 213 ALSNQKFREFRETF------GDNNVGLLTGD---SAINREAQILIMTTEILRNMLYQSVG 263
AL NQ + F G+ G+ T + A+N Q+LI +L
Sbjct: 819 ALVNQVAATVQNRFTKNLPSGEVLCGVFTREYRHDALN--CQVLITVPACFEILLLAP-- 874
Query: 264 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEE--IIIYCPKEVQIICLSATVANADELA 321
++ + + ++ DEVH L +WE ++I CP + LSAT++N + L
Sbjct: 875 --HRQNWVKKIRYVIFDEVHCLGGEIGAEIWEHLLVMIRCP----FLALSATISNPEHLT 928
Query: 322 GWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL--NYLQLSTSE 379
W+ + WY+ + ++ +H+ R+ +YLQ+ S
Sbjct: 929 EWLQSV----------------KWYWKQEDKIIENNTASKRHVGRQAGFPKDYLQVKQSY 972
Query: 380 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP-----------Q 428
G R + KH + + H + + + I R P Q
Sbjct: 973 KVRLVLYGERYNDLEKHVCSIKHGDIHFDHFHPCAALTTDHIERYGFPPDLTLSPRESIQ 1032
Query: 429 VIDTLWHL-----RSRDMLPAIWFIFNRR 452
+ D ++ + R++++ P + FN +
Sbjct: 1033 LYDAMFQIWKSWPRAQELCPENFIHFNNK 1061
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,578,191
Number of Sequences: 539616
Number of extensions: 17712925
Number of successful extensions: 101051
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 557
Number of HSP's that attempted gapping in prelim test: 86786
Number of HSP's gapped (non-prelim): 10291
length of query: 1174
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1045
effective length of database: 121,958,995
effective search space: 127447149775
effective search space used: 127447149775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)