Query 001047
Match_columns 1174
No_of_seqs 683 out of 4005
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 14:21:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0948 Nuclear exosomal RNA h 100.0 5E-148 1E-152 1259.2 54.0 884 152-1171 122-1036(1041)
2 KOG0947 Cytoplasmic exosomal R 100.0 5E-138 1E-142 1203.9 69.3 959 126-1174 267-1246(1248)
3 COG4581 Superfamily II RNA hel 100.0 2E-110 4E-115 1021.2 66.0 896 149-1170 109-1035(1041)
4 PRK02362 ski2-like helicase; P 100.0 4.9E-53 1.1E-57 534.2 46.4 442 139-664 3-457 (737)
5 PRK01172 ski2-like helicase; P 100.0 2.8E-49 6.1E-54 496.9 43.9 426 140-664 4-437 (674)
6 PRK00254 ski2-like helicase; P 100.0 4.9E-49 1.1E-53 496.6 44.4 435 140-664 4-447 (720)
7 KOG0338 ATP-dependent RNA heli 100.0 5.1E-49 1.1E-53 434.3 30.2 341 133-593 177-534 (691)
8 COG1204 Superfamily II helicas 100.0 1.1E-48 2.4E-53 482.4 29.7 422 159-664 31-468 (766)
9 KOG0331 ATP-dependent RNA heli 100.0 8.1E-47 1.8E-51 435.1 33.1 338 138-593 92-449 (519)
10 KOG0330 ATP-dependent RNA heli 100.0 3.1E-47 6.7E-52 409.7 25.6 334 137-593 61-408 (476)
11 KOG0952 DNA/RNA helicase MER3/ 100.0 2.8E-47 6E-52 451.6 26.3 408 154-644 104-539 (1230)
12 PRK10590 ATP-dependent RNA hel 100.0 1.5E-44 3.2E-49 433.8 34.9 330 139-592 3-352 (456)
13 COG0513 SrmB Superfamily II DN 100.0 1.9E-44 4.2E-49 434.8 35.0 335 137-596 29-384 (513)
14 PRK11776 ATP-dependent RNA hel 100.0 1.6E-44 3.5E-49 435.4 34.2 330 138-593 5-350 (460)
15 PLN00206 DEAD-box ATP-dependen 100.0 7.8E-44 1.7E-48 432.6 34.6 333 136-593 120-476 (518)
16 PRK04837 ATP-dependent RNA hel 100.0 8.3E-44 1.8E-48 424.6 33.8 329 138-593 9-363 (423)
17 PRK04537 ATP-dependent RNA hel 100.0 1.2E-43 2.5E-48 433.4 35.2 329 138-592 10-364 (572)
18 PRK11192 ATP-dependent RNA hel 100.0 1.5E-43 3.2E-48 424.4 35.3 330 138-592 2-352 (434)
19 PTZ00110 helicase; Provisional 100.0 1E-43 2.2E-48 432.7 34.3 335 137-593 130-485 (545)
20 COG1202 Superfamily II helicas 100.0 3.4E-44 7.4E-49 400.8 25.7 359 142-614 199-584 (830)
21 PRK11634 ATP-dependent RNA hel 100.0 3.6E-43 7.8E-48 431.1 36.2 331 138-593 7-353 (629)
22 TIGR03817 DECH_helic helicase/ 100.0 8.4E-43 1.8E-47 435.9 39.0 345 148-591 25-385 (742)
23 KOG0342 ATP-dependent RNA heli 100.0 3.5E-43 7.5E-48 389.7 28.9 339 136-593 81-438 (543)
24 KOG0340 ATP-dependent RNA heli 100.0 2.2E-43 4.7E-48 375.8 25.0 345 136-593 6-362 (442)
25 KOG0343 RNA Helicase [RNA proc 100.0 7.3E-43 1.6E-47 388.8 27.7 350 136-608 68-437 (758)
26 KOG0333 U5 snRNP-like RNA heli 100.0 3.2E-43 7E-48 390.3 24.6 355 114-593 222-625 (673)
27 PRK01297 ATP-dependent RNA hel 100.0 3E-42 6.5E-47 416.7 35.4 328 138-592 88-442 (475)
28 PTZ00424 helicase 45; Provisio 100.0 2E-42 4.3E-47 411.4 31.2 335 136-593 27-375 (401)
29 KOG0345 ATP-dependent RNA heli 100.0 5.3E-42 1.2E-46 377.1 31.3 351 144-613 13-384 (567)
30 KOG0951 RNA helicase BRR2, DEA 100.0 3.4E-42 7.5E-47 411.6 26.1 404 160-642 310-747 (1674)
31 PRK13767 ATP-dependent helicas 100.0 5.8E-41 1.3E-45 427.6 38.1 323 159-587 32-395 (876)
32 PLN03137 ATP-dependent DNA hel 100.0 7.2E-41 1.6E-45 412.7 33.3 333 141-602 441-796 (1195)
33 KOG0328 Predicted ATP-dependen 100.0 1.1E-41 2.5E-46 351.6 21.3 334 137-592 27-373 (400)
34 KOG0348 ATP-dependent RNA heli 100.0 4E-41 8.6E-46 374.1 27.2 388 137-603 136-563 (708)
35 KOG0346 RNA helicase [RNA proc 100.0 8.7E-41 1.9E-45 364.1 28.6 441 137-752 19-519 (569)
36 KOG0326 ATP-dependent RNA heli 100.0 7.9E-42 1.7E-46 358.0 18.1 355 137-616 85-455 (459)
37 TIGR00614 recQ_fam ATP-depende 100.0 6.4E-40 1.4E-44 394.9 36.4 321 152-603 3-343 (470)
38 KOG0347 RNA helicase [RNA proc 100.0 1.2E-41 2.7E-46 379.2 19.8 356 135-593 179-571 (731)
39 PF08148 DSHCT: DSHCT (NUC185) 100.0 2.5E-41 5.3E-46 351.4 11.7 170 997-1172 1-176 (180)
40 PRK09751 putative ATP-dependen 100.0 8.4E-39 1.8E-43 411.3 33.4 364 179-611 1-408 (1490)
41 PRK11057 ATP-dependent DNA hel 100.0 1.9E-38 4.1E-43 391.8 35.1 312 149-593 14-344 (607)
42 KOG0350 DEAD-box ATP-dependent 100.0 6.6E-39 1.4E-43 354.7 25.0 337 150-602 150-549 (620)
43 KOG0335 ATP-dependent RNA heli 100.0 3E-39 6.5E-44 366.0 21.2 320 151-590 88-442 (482)
44 COG1201 Lhr Lhr-like helicases 100.0 2.3E-38 5E-43 384.7 30.2 331 147-593 11-363 (814)
45 TIGR01389 recQ ATP-dependent D 100.0 8.2E-38 1.8E-42 387.5 35.0 311 150-593 3-332 (591)
46 KOG0341 DEAD-box protein abstr 100.0 2.9E-39 6.3E-44 345.7 15.8 335 136-593 169-529 (610)
47 KOG0336 ATP-dependent RNA heli 100.0 6.7E-38 1.5E-42 337.5 25.3 325 142-593 225-573 (629)
48 KOG0339 ATP-dependent RNA heli 100.0 3.6E-38 7.9E-43 347.8 23.5 335 136-593 222-576 (731)
49 TIGR00580 mfd transcription-re 100.0 2.2E-36 4.8E-41 380.8 35.1 310 147-592 439-770 (926)
50 KOG0332 ATP-dependent RNA heli 100.0 1.4E-36 3E-41 325.5 27.7 341 137-596 90-447 (477)
51 KOG0949 Predicted helicase, DE 100.0 1.8E-36 4E-41 355.5 27.0 453 157-625 509-1078(1330)
52 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.8E-35 3.9E-40 369.1 37.2 317 161-592 4-336 (819)
53 PRK10917 ATP-dependent DNA hel 100.0 1.6E-35 3.4E-40 369.5 36.4 318 148-591 250-588 (681)
54 PRK11664 ATP-dependent RNA hel 100.0 4.7E-35 1E-39 366.5 34.2 319 159-592 5-339 (812)
55 PRK10689 transcription-repair 100.0 4.9E-35 1.1E-39 376.2 34.9 311 147-591 588-918 (1147)
56 TIGR00643 recG ATP-dependent D 100.0 4.9E-35 1.1E-39 362.9 33.1 318 149-591 225-565 (630)
57 KOG0344 ATP-dependent RNA heli 100.0 4.3E-36 9.3E-41 341.4 20.7 327 147-593 146-496 (593)
58 KOG0950 DNA polymerase theta/e 100.0 3.7E-35 8.1E-40 348.5 24.5 395 159-616 223-634 (1008)
59 KOG4284 DEAD box protein [Tran 100.0 2.1E-35 4.6E-40 333.5 21.0 329 148-594 36-381 (980)
60 COG0514 RecQ Superfamily II DN 100.0 2.9E-34 6.3E-39 337.5 28.3 312 151-593 8-338 (590)
61 KOG0334 RNA helicase [RNA proc 100.0 6.5E-35 1.4E-39 351.4 23.1 338 136-591 364-719 (997)
62 KOG0327 Translation initiation 100.0 8.9E-34 1.9E-38 308.0 22.2 333 136-593 25-371 (397)
63 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.8E-33 1.3E-37 339.6 31.5 319 150-588 6-388 (844)
64 PHA02653 RNA helicase NPH-II; 100.0 6.4E-33 1.4E-37 338.5 29.8 313 163-593 168-515 (675)
65 COG1111 MPH1 ERCC4-like helica 100.0 1.6E-32 3.4E-37 307.8 28.9 392 159-593 15-482 (542)
66 KOG0337 ATP-dependent RNA heli 100.0 6.7E-34 1.4E-38 309.3 16.2 341 137-601 21-376 (529)
67 PHA02558 uvsW UvsW helicase; P 100.0 5.9E-32 1.3E-36 327.4 29.1 317 157-579 112-441 (501)
68 TIGR01587 cas3_core CRISPR-ass 100.0 6E-32 1.3E-36 316.4 27.6 299 176-591 1-335 (358)
69 PRK11131 ATP-dependent RNA hel 100.0 1.8E-31 3.9E-36 338.0 30.7 320 158-592 73-411 (1294)
70 COG1205 Distinct helicase fami 100.0 2E-31 4.3E-36 334.2 29.8 339 150-590 61-420 (851)
71 TIGR01967 DEAH_box_HrpA ATP-de 100.0 4.8E-30 1E-34 326.5 31.3 321 159-592 67-404 (1283)
72 KOG0354 DEAD-box like helicase 100.0 2.6E-30 5.5E-35 306.8 24.6 388 158-591 61-528 (746)
73 KOG0352 ATP-dependent DNA heli 100.0 2.2E-30 4.7E-35 281.2 21.3 327 149-593 8-363 (641)
74 PRK09401 reverse gyrase; Revie 100.0 7.9E-30 1.7E-34 328.9 29.1 295 150-577 71-431 (1176)
75 TIGR03158 cas3_cyano CRISPR-as 100.0 3.8E-29 8.3E-34 290.1 29.9 308 163-575 1-357 (357)
76 PRK13766 Hef nuclease; Provisi 100.0 7.4E-29 1.6E-33 318.0 34.8 382 156-592 12-479 (773)
77 KOG0922 DEAH-box RNA helicase 100.0 2.4E-29 5.1E-34 291.0 26.9 349 158-625 50-417 (674)
78 COG1643 HrpA HrpA-like helicas 100.0 1.7E-29 3.7E-34 310.0 26.7 324 155-591 46-386 (845)
79 KOG0351 ATP-dependent DNA heli 100.0 7.7E-30 1.7E-34 316.8 23.5 328 149-605 253-604 (941)
80 KOG0329 ATP-dependent RNA heli 100.0 9.3E-31 2E-35 267.0 10.6 303 137-595 42-358 (387)
81 KOG0353 ATP-dependent DNA heli 100.0 2.4E-29 5.2E-34 268.6 21.7 322 140-591 74-466 (695)
82 PRK14701 reverse gyrase; Provi 100.0 6.8E-29 1.5E-33 326.1 27.4 300 150-580 70-446 (1638)
83 TIGR00603 rad25 DNA repair hel 100.0 2.1E-28 4.5E-33 297.2 28.5 337 157-593 253-608 (732)
84 KOG0923 mRNA splicing factor A 100.0 2.5E-27 5.4E-32 269.8 26.7 368 158-665 264-651 (902)
85 PRK05580 primosome assembly pr 100.0 2.6E-27 5.5E-32 294.6 28.7 333 156-592 141-549 (679)
86 PRK09200 preprotein translocas 100.0 4.8E-27 1E-31 288.1 30.3 364 150-593 69-542 (790)
87 COG1200 RecG RecG-like helicas 100.0 8.6E-27 1.9E-31 272.9 30.6 325 144-593 247-592 (677)
88 PRK12898 secA preprotein trans 100.0 3.5E-27 7.5E-32 283.5 27.4 135 150-286 94-255 (656)
89 TIGR01054 rgy reverse gyrase. 100.0 5.7E-27 1.2E-31 303.1 27.8 272 152-549 71-404 (1171)
90 COG1197 Mfd Transcription-repa 100.0 1.2E-26 2.6E-31 285.5 28.0 318 142-593 577-914 (1139)
91 COG1061 SSL2 DNA or RNA helica 99.9 2.5E-26 5.4E-31 273.0 27.4 326 154-577 31-376 (442)
92 TIGR03714 secA2 accessory Sec 99.9 2.7E-26 5.8E-31 278.7 27.9 357 159-593 68-538 (762)
93 KOG0920 ATP-dependent RNA heli 99.9 7.5E-27 1.6E-31 284.9 23.1 355 156-591 170-543 (924)
94 PRK09694 helicase Cas3; Provis 99.9 1.3E-25 2.8E-30 280.7 32.3 326 157-579 284-664 (878)
95 KOG0926 DEAH-box RNA helicase 99.9 3.1E-26 6.7E-31 264.9 24.6 361 148-591 245-703 (1172)
96 TIGR00963 secA preprotein tran 99.9 6.3E-26 1.4E-30 273.6 27.8 365 150-593 47-518 (745)
97 KOG0924 mRNA splicing factor A 99.9 4.7E-26 1E-30 259.4 23.4 352 158-625 355-725 (1042)
98 COG4098 comFA Superfamily II D 99.9 9.9E-25 2.2E-29 232.8 30.5 308 159-591 97-415 (441)
99 TIGR00595 priA primosomal prot 99.9 1.1E-25 2.4E-30 270.5 25.4 313 178-591 1-380 (505)
100 PRK04914 ATP-dependent helicas 99.9 8.8E-24 1.9E-28 265.7 37.6 376 158-590 151-603 (956)
101 KOG0349 Putative DEAD-box RNA 99.9 1.3E-23 2.7E-28 228.7 15.8 305 205-590 289-613 (725)
102 PRK11448 hsdR type I restricti 99.9 1.9E-22 4.1E-27 259.4 29.1 350 158-578 412-801 (1123)
103 KOG0951 RNA helicase BRR2, DEA 99.9 5.4E-23 1.2E-27 248.0 17.5 372 143-615 1128-1515(1674)
104 cd00268 DEADc DEAD-box helicas 99.9 6.6E-22 1.4E-26 212.4 19.1 170 141-316 3-186 (203)
105 PRK13104 secA preprotein trans 99.9 8.4E-21 1.8E-25 232.3 26.7 133 152-286 75-215 (896)
106 PF00270 DEAD: DEAD/DEAH box h 99.9 2.1E-21 4.5E-26 201.9 17.8 149 161-315 1-163 (169)
107 KOG0925 mRNA splicing factor A 99.9 4.8E-21 1E-25 212.1 19.5 340 136-591 24-386 (699)
108 PRK12904 preprotein translocas 99.9 4.6E-20 9.9E-25 226.0 26.6 134 151-286 73-214 (830)
109 PRK12906 secA preprotein trans 99.9 2.6E-20 5.7E-25 227.2 23.6 361 150-593 71-554 (796)
110 COG1198 PriA Primosomal protei 99.8 3.5E-20 7.6E-25 225.2 22.5 336 158-591 197-602 (730)
111 COG1203 CRISPR-associated heli 99.8 2.7E-19 5.8E-24 225.2 24.8 319 158-592 194-550 (733)
112 COG0556 UvrB Helicase subunit 99.8 2.7E-18 5.8E-23 193.6 28.9 125 426-591 432-556 (663)
113 KOG0953 Mitochondrial RNA heli 99.8 2.3E-19 4.9E-24 202.5 18.0 293 175-610 192-493 (700)
114 PLN03142 Probable chromatin-re 99.8 1.9E-18 4.2E-23 218.4 26.9 375 159-592 169-599 (1033)
115 COG4096 HsdR Type I site-speci 99.8 4.4E-18 9.5E-23 202.2 25.1 338 158-578 164-526 (875)
116 TIGR00631 uvrb excinuclease AB 99.8 1.4E-17 3.1E-22 205.1 30.4 114 440-593 441-554 (655)
117 PRK13107 preprotein translocas 99.8 5.1E-18 1.1E-22 207.3 23.8 133 152-286 75-215 (908)
118 PRK12899 secA preprotein trans 99.8 1.1E-17 2.4E-22 204.4 26.1 129 158-286 91-228 (970)
119 PRK05298 excinuclease ABC subu 99.8 1.4E-16 3.1E-21 197.9 35.7 113 440-592 445-557 (652)
120 TIGR00348 hsdR type I site-spe 99.8 2.1E-17 4.5E-22 206.1 24.1 147 160-315 239-403 (667)
121 TIGR01407 dinG_rel DnaQ family 99.8 1.5E-16 3.2E-21 204.6 32.2 144 428-606 661-828 (850)
122 COG1110 Reverse gyrase [DNA re 99.8 1.3E-16 2.7E-21 192.1 26.8 128 150-286 73-216 (1187)
123 KOG4150 Predicted ATP-dependen 99.7 1.7E-16 3.7E-21 178.3 17.5 335 157-591 284-641 (1034)
124 smart00487 DEXDc DEAD-like hel 99.7 2.6E-16 5.7E-21 167.0 17.7 157 155-317 4-173 (201)
125 KOG1123 RNA polymerase II tran 99.7 2.2E-16 4.8E-21 175.8 16.0 308 159-577 302-634 (776)
126 PRK12900 secA preprotein trans 99.6 2.1E-14 4.5E-19 176.5 21.5 108 440-593 597-712 (1025)
127 PRK07246 bifunctional ATP-depe 99.6 2.7E-13 5.8E-18 172.2 31.8 66 157-223 243-313 (820)
128 PRK12326 preprotein translocas 99.6 1.9E-13 4.1E-18 163.9 26.5 131 150-286 69-211 (764)
129 PF04851 ResIII: Type III rest 99.6 6.8E-15 1.5E-19 154.9 11.4 148 158-315 2-183 (184)
130 PRK08074 bifunctional ATP-depe 99.6 1.4E-12 3.1E-17 168.6 33.1 146 427-606 738-907 (928)
131 cd00046 DEXDc DEAD-like helica 99.5 8E-14 1.7E-18 139.0 15.3 134 175-314 1-144 (144)
132 KOG0385 Chromatin remodeling c 99.5 1E-12 2.3E-17 154.0 25.9 378 158-593 166-600 (971)
133 KOG0387 Transcription-coupled 99.5 2.2E-12 4.8E-17 152.2 27.4 376 159-591 205-657 (923)
134 PF13234 rRNA_proc-arch: rRNA- 99.5 4.4E-14 9.6E-19 157.8 11.7 257 652-975 1-267 (268)
135 KOG0952 DNA/RNA helicase MER3/ 99.5 1.2E-15 2.5E-20 183.8 -2.4 192 152-351 921-1128(1230)
136 PF00271 Helicase_C: Helicase 99.5 6.6E-14 1.4E-18 125.6 8.5 73 498-578 6-78 (78)
137 cd00079 HELICc Helicase superf 99.5 1.9E-13 4.2E-18 135.3 11.6 105 440-588 27-131 (131)
138 PRK13103 secA preprotein trans 99.5 2.4E-12 5.1E-17 158.3 23.3 128 153-286 76-215 (913)
139 COG4889 Predicted helicase [Ge 99.5 3.9E-13 8.5E-18 158.1 15.5 358 156-587 158-583 (1518)
140 PRK14873 primosome assembly pr 99.5 6.9E-13 1.5E-17 163.3 18.5 136 179-331 165-316 (665)
141 KOG1000 Chromatin remodeling p 99.5 3.2E-12 7E-17 143.2 20.0 380 159-591 198-602 (689)
142 KOG0921 Dosage compensation co 99.4 4.6E-13 1E-17 158.4 13.6 368 162-591 381-773 (1282)
143 TIGR03117 cas_csf4 CRISPR-asso 99.4 1.5E-10 3.3E-15 140.9 29.8 59 167-225 9-69 (636)
144 PRK12903 secA preprotein trans 99.4 5.9E-11 1.3E-15 144.5 25.3 129 151-286 70-211 (925)
145 KOG0390 DNA repair protein, SN 99.3 1.3E-10 2.8E-15 141.4 24.7 145 159-315 238-415 (776)
146 TIGR02562 cas3_yersinia CRISPR 99.3 1.4E-10 3.1E-15 143.8 23.2 155 159-316 408-636 (1110)
147 PF07652 Flavi_DEAD: Flaviviru 99.3 1.4E-11 3E-16 120.0 10.5 130 173-316 3-138 (148)
148 PRK11747 dinG ATP-dependent DN 99.3 1.4E-09 3E-14 136.9 30.0 64 156-219 22-95 (697)
149 KOG0384 Chromodomain-helicase 99.3 1.4E-10 3E-15 142.8 20.3 377 159-598 370-817 (1373)
150 COG1199 DinG Rad3-related DNA 99.3 7E-10 1.5E-14 140.5 27.5 72 153-224 9-85 (654)
151 smart00490 HELICc helicase sup 99.3 1.5E-11 3.2E-16 110.9 8.5 72 499-578 11-82 (82)
152 CHL00122 secA preprotein trans 99.2 6.1E-10 1.3E-14 136.8 23.9 129 151-286 68-209 (870)
153 KOG1002 Nucleotide excision re 99.2 2.9E-09 6.2E-14 119.5 26.8 153 158-315 183-355 (791)
154 TIGR00604 rad3 DNA repair heli 99.2 7.2E-09 1.6E-13 131.5 29.7 71 154-224 4-82 (705)
155 PRK12902 secA preprotein trans 99.2 4.2E-09 9.1E-14 129.2 25.4 129 151-286 77-218 (939)
156 KOG0389 SNF2 family DNA-depend 99.1 4.2E-09 9E-14 124.9 18.5 161 158-327 398-577 (941)
157 PF00176 SNF2_N: SNF2 family N 99.0 4.2E-09 9.1E-14 120.1 16.9 157 163-326 1-186 (299)
158 KOG0392 SNF2 family DNA-depend 99.0 9.5E-09 2.1E-13 126.4 20.4 151 159-321 975-1147(1549)
159 PF02399 Herpes_ori_bp: Origin 99.0 3.5E-08 7.6E-13 120.2 22.7 152 175-337 50-213 (824)
160 PRK12901 secA preprotein trans 98.8 1.5E-07 3.2E-12 117.0 19.3 122 158-286 168-303 (1112)
161 KOG4439 RNA polymerase II tran 98.7 5.5E-07 1.2E-11 105.9 20.8 154 158-315 324-502 (901)
162 COG0610 Type I site-specific r 98.7 4.6E-07 1E-11 117.2 19.0 372 175-606 274-667 (962)
163 KOG0386 Chromatin remodeling c 98.6 9.4E-08 2E-12 116.3 10.8 144 159-315 394-555 (1157)
164 COG0553 HepA Superfamily II DN 98.4 1.3E-05 2.9E-10 105.5 21.6 148 158-314 337-510 (866)
165 PF06862 DUF1253: Protein of u 98.3 0.00015 3.3E-09 84.9 26.7 114 438-593 297-416 (442)
166 PF07517 SecA_DEAD: SecA DEAD- 98.3 4.2E-06 9.2E-11 92.1 12.2 133 151-286 69-210 (266)
167 KOG0388 SNF2 family DNA-depend 98.3 6.1E-05 1.3E-09 88.8 21.2 142 158-314 566-733 (1185)
168 PRK15483 type III restriction- 98.3 7E-06 1.5E-10 103.4 13.8 138 175-316 60-240 (986)
169 smart00488 DEXDc2 DEAD-like he 98.2 3.8E-06 8.3E-11 94.9 9.3 71 155-225 4-84 (289)
170 smart00489 DEXDc3 DEAD-like he 98.2 3.8E-06 8.3E-11 94.9 9.3 71 155-225 4-84 (289)
171 KOG2340 Uncharacterized conser 98.1 0.0001 2.2E-09 84.8 18.3 129 159-287 216-429 (698)
172 PF13604 AAA_30: AAA domain; P 98.1 2.1E-05 4.7E-10 83.7 12.2 125 159-311 1-128 (196)
173 PF02562 PhoH: PhoH-like prote 98.0 1.2E-05 2.7E-10 85.0 8.3 124 159-312 4-154 (205)
174 KOG0391 SNF2 family DNA-depend 97.9 0.00011 2.4E-09 90.7 13.8 145 159-315 615-776 (1958)
175 COG3587 Restriction endonuclea 97.8 0.00097 2.1E-08 81.4 19.6 55 525-587 483-537 (985)
176 PF09848 DUF2075: Uncharacteri 97.8 7.5E-05 1.6E-09 87.3 10.2 93 176-287 3-97 (352)
177 PRK10875 recD exonuclease V su 97.8 0.0002 4.4E-09 88.4 13.9 152 151-311 142-299 (615)
178 TIGR01447 recD exodeoxyribonuc 97.8 0.00021 4.5E-09 88.2 13.8 152 151-311 136-293 (586)
179 PRK10536 hypothetical protein; 97.8 8.5E-05 1.8E-09 80.8 9.1 135 158-310 58-209 (262)
180 PF13872 AAA_34: P-loop contai 97.8 0.00033 7.2E-09 77.5 13.7 156 159-315 37-221 (303)
181 KOG1803 DNA helicase [Replicat 97.7 9.9E-05 2.1E-09 86.9 9.4 70 154-223 180-250 (649)
182 PF13245 AAA_19: Part of AAA d 97.7 0.00013 2.9E-09 64.7 7.4 56 167-222 2-62 (76)
183 TIGR01448 recD_rel helicase, p 97.7 0.0004 8.6E-09 88.2 14.6 133 152-312 316-451 (720)
184 COG0653 SecA Preprotein transl 97.6 0.0013 2.7E-08 81.9 17.5 127 153-286 74-213 (822)
185 PF12340 DUF3638: Protein of u 97.6 0.00037 7.9E-09 74.5 10.6 135 153-287 17-186 (229)
186 KOG1015 Transcription regulato 97.5 0.0028 6E-08 77.6 17.5 94 503-604 1192-1290(1567)
187 TIGR00596 rad1 DNA repair prot 97.5 0.0022 4.7E-08 81.5 17.6 69 242-316 6-74 (814)
188 PRK06526 transposase; Provisio 97.4 0.0017 3.7E-08 71.9 13.4 108 169-314 93-201 (254)
189 PF13401 AAA_22: AAA domain; P 97.4 0.00031 6.8E-09 69.4 6.5 117 173-314 3-125 (131)
190 PF13086 AAA_11: AAA domain; P 97.4 0.00035 7.6E-09 76.3 7.5 66 159-224 1-75 (236)
191 TIGR02768 TraA_Ti Ti-type conj 97.2 0.0032 7E-08 80.4 14.0 123 156-311 349-474 (744)
192 PRK08181 transposase; Validate 97.1 0.0063 1.4E-07 67.9 13.4 116 160-313 88-208 (269)
193 PRK12723 flagellar biosynthesi 97.1 0.0066 1.4E-07 71.0 14.2 126 175-326 175-308 (388)
194 cd00009 AAA The AAA+ (ATPases 97.0 0.0054 1.2E-07 61.0 11.5 38 174-211 19-56 (151)
195 PRK13889 conjugal transfer rel 97.0 0.0074 1.6E-07 78.2 14.6 125 156-313 343-470 (988)
196 KOG1132 Helicase of the DEAD s 96.9 0.0031 6.8E-08 77.5 9.9 74 151-224 13-132 (945)
197 COG3421 Uncharacterized protei 96.9 0.0029 6.3E-08 74.3 8.6 139 179-317 2-168 (812)
198 PRK04296 thymidine kinase; Pro 96.8 0.0051 1.1E-07 65.2 9.4 37 174-210 2-38 (190)
199 TIGR00376 DNA helicase, putati 96.8 0.0039 8.4E-08 78.1 9.6 68 158-225 156-224 (637)
200 PF13307 Helicase_C_2: Helicas 96.8 0.0044 9.5E-08 64.3 8.4 123 436-593 4-152 (167)
201 PF00580 UvrD-helicase: UvrD/R 96.8 0.0028 6E-08 72.7 7.6 97 160-259 1-105 (315)
202 PRK14974 cell division protein 96.7 0.018 4E-07 66.1 13.8 123 175-316 141-266 (336)
203 smart00382 AAA ATPases associa 96.7 0.003 6.4E-08 62.3 6.6 43 174-216 2-44 (148)
204 COG1875 NYN ribonuclease and A 96.6 0.0088 1.9E-07 67.1 9.2 139 154-311 222-385 (436)
205 PRK11889 flhF flagellar biosyn 96.6 0.035 7.5E-07 64.2 14.2 125 175-325 242-372 (436)
206 KOG1805 DNA replication helica 96.5 0.009 1.9E-07 74.2 9.9 115 158-286 668-809 (1100)
207 PF05970 PIF1: PIF1-like helic 96.5 0.0083 1.8E-07 70.4 9.4 108 159-287 1-116 (364)
208 PRK05703 flhF flagellar biosyn 96.5 0.03 6.4E-07 66.8 14.1 126 174-325 221-352 (424)
209 PRK13826 Dtr system oriT relax 96.5 0.027 5.8E-07 73.6 14.5 124 157-313 379-505 (1102)
210 PRK07952 DNA replication prote 96.5 0.044 9.5E-07 60.3 13.9 126 161-324 78-213 (244)
211 PF00448 SRP54: SRP54-type pro 96.4 0.033 7.1E-07 59.3 12.3 122 176-316 3-127 (196)
212 PRK14722 flhF flagellar biosyn 96.3 0.025 5.5E-07 65.7 11.6 115 173-315 136-258 (374)
213 PHA03333 putative ATPase subun 96.3 0.086 1.9E-06 64.6 16.3 167 144-328 154-345 (752)
214 PRK08116 hypothetical protein; 96.3 0.045 9.8E-07 61.3 13.1 60 158-218 87-157 (268)
215 PRK12377 putative replication 96.1 0.13 2.8E-06 56.7 15.3 45 175-220 102-146 (248)
216 PRK09183 transposase/IS protei 96.1 0.19 4.1E-06 56.0 16.6 58 160-218 85-145 (259)
217 COG1419 FlhF Flagellar GTP-bin 96.1 0.092 2E-06 60.7 14.2 140 173-349 202-346 (407)
218 PRK05642 DNA replication initi 96.0 0.029 6.3E-07 61.6 9.8 94 175-315 46-140 (234)
219 cd01124 KaiC KaiC is a circadi 96.0 0.019 4.1E-07 60.5 8.0 48 176-224 1-48 (187)
220 PRK06921 hypothetical protein; 95.9 0.068 1.5E-06 59.8 12.3 44 173-217 116-160 (266)
221 cd01120 RecA-like_NTPases RecA 95.9 0.041 8.9E-07 56.0 9.8 40 177-216 2-41 (165)
222 PRK08727 hypothetical protein; 95.9 0.027 5.9E-07 61.8 8.6 35 175-209 42-76 (233)
223 PRK08084 DNA replication initi 95.8 0.054 1.2E-06 59.6 10.9 36 175-210 46-81 (235)
224 PRK06893 DNA replication initi 95.8 0.024 5.3E-07 62.0 8.1 36 175-210 40-75 (229)
225 KOG1016 Predicted DNA helicase 95.8 0.46 1E-05 57.8 18.5 90 505-603 767-861 (1387)
226 TIGR03015 pepcterm_ATPase puta 95.8 0.033 7.1E-07 62.5 9.0 67 160-227 24-96 (269)
227 PRK08903 DnaA regulatory inact 95.7 0.095 2.1E-06 57.2 12.2 37 174-210 42-78 (227)
228 PHA02533 17 large terminase pr 95.7 0.1 2.2E-06 64.0 13.6 143 156-313 56-209 (534)
229 KOG2028 ATPase related to the 95.6 0.16 3.5E-06 57.0 12.9 52 171-222 157-210 (554)
230 PRK12726 flagellar biosynthesi 95.6 0.14 3E-06 59.3 12.8 128 173-325 205-337 (407)
231 PRK12727 flagellar biosynthesi 95.6 0.21 4.5E-06 60.2 14.8 126 173-325 349-479 (559)
232 PRK06835 DNA replication prote 95.5 0.17 3.6E-06 58.3 13.5 45 173-218 182-226 (329)
233 COG1484 DnaC DNA replication p 95.5 0.091 2E-06 58.3 10.9 91 173-300 104-195 (254)
234 PRK10919 ATP-dependent DNA hel 95.4 0.062 1.3E-06 68.3 10.7 88 159-260 2-93 (672)
235 TIGR03420 DnaA_homol_Hda DnaA 95.4 0.057 1.2E-06 58.8 9.1 35 174-208 38-72 (226)
236 PRK00149 dnaA chromosomal repl 95.4 0.065 1.4E-06 64.9 10.4 75 175-287 149-225 (450)
237 PRK12724 flagellar biosynthesi 95.4 0.25 5.4E-06 58.1 14.5 117 174-316 223-346 (432)
238 PHA03368 DNA packaging termina 95.3 0.084 1.8E-06 64.4 10.6 139 173-329 253-404 (738)
239 KOG1802 RNA helicase nonsense 95.3 0.034 7.4E-07 66.4 7.2 66 159-224 410-476 (935)
240 TIGR00064 ftsY signal recognit 95.3 0.31 6.7E-06 54.7 14.4 121 175-315 73-203 (272)
241 TIGR03499 FlhF flagellar biosy 95.3 0.083 1.8E-06 59.7 9.9 84 174-282 194-281 (282)
242 TIGR02760 TraI_TIGR conjugativ 95.2 0.3 6.6E-06 68.7 17.1 66 155-220 425-492 (1960)
243 KOG0989 Replication factor C, 95.2 0.068 1.5E-06 59.0 8.4 45 270-315 126-170 (346)
244 PTZ00112 origin recognition co 95.1 0.23 5E-06 62.5 13.6 19 177-195 784-802 (1164)
245 TIGR00362 DnaA chromosomal rep 95.1 0.094 2E-06 62.7 10.3 42 175-217 137-180 (405)
246 PRK12402 replication factor C 95.1 0.1 2.2E-06 60.6 10.4 27 171-197 31-59 (337)
247 PRK06731 flhF flagellar biosyn 95.0 0.38 8.1E-06 53.8 14.0 126 173-325 74-206 (270)
248 PRK11054 helD DNA helicase IV; 95.0 0.094 2E-06 66.3 10.3 90 153-259 190-283 (684)
249 COG1474 CDC6 Cdc6-related prot 95.0 0.27 6E-06 57.4 13.4 104 175-300 43-149 (366)
250 cd00561 CobA_CobO_BtuR ATP:cor 94.9 0.14 3.1E-06 52.2 9.3 132 176-315 4-139 (159)
251 PRK00411 cdc6 cell division co 94.8 0.2 4.2E-06 59.7 11.8 121 175-314 56-183 (394)
252 KOG0391 SNF2 family DNA-depend 94.8 0.17 3.6E-06 64.1 11.0 111 440-592 1275-1387(1958)
253 TIGR01075 uvrD DNA helicase II 94.8 0.11 2.4E-06 66.8 10.2 87 159-260 4-94 (715)
254 TIGR02782 TrbB_P P-type conjug 94.7 0.23 5.1E-06 56.5 11.5 105 147-283 106-214 (299)
255 PRK11773 uvrD DNA-dependent he 94.6 0.15 3.2E-06 65.7 10.8 87 159-260 9-99 (721)
256 PRK08939 primosomal protein Dn 94.6 0.23 5E-06 56.7 11.1 110 174-324 156-269 (306)
257 PRK12422 chromosomal replicati 94.6 0.16 3.4E-06 61.1 10.3 42 175-217 142-183 (445)
258 KOG0298 DEAD box-containing he 94.5 0.12 2.5E-06 66.5 9.2 138 173-314 373-550 (1394)
259 PRK08533 flagellar accessory p 94.5 0.11 2.4E-06 56.9 8.0 51 172-223 22-72 (230)
260 TIGR01074 rep ATP-dependent DN 94.5 0.17 3.6E-06 64.7 10.9 87 160-260 2-92 (664)
261 PRK10416 signal recognition pa 94.5 0.48 1E-05 54.4 13.5 124 174-316 114-246 (318)
262 smart00492 HELICc3 helicase su 94.4 0.12 2.6E-06 51.8 7.5 89 501-590 23-137 (141)
263 PRK00771 signal recognition pa 94.4 0.35 7.6E-06 57.7 12.6 120 175-315 96-218 (437)
264 PRK14712 conjugal transfer nic 94.4 0.48 1E-05 64.4 14.8 135 149-313 825-967 (1623)
265 PRK07003 DNA polymerase III su 94.3 0.078 1.7E-06 66.0 6.9 39 272-311 118-156 (830)
266 PF00308 Bac_DnaA: Bacterial d 94.3 0.22 4.9E-06 54.0 9.8 102 176-316 36-142 (219)
267 PLN03025 replication factor C 94.3 0.19 4E-06 58.1 9.7 23 175-197 35-57 (319)
268 PRK05986 cob(I)alamin adenolsy 94.2 0.16 3.5E-06 53.3 8.1 41 173-213 21-61 (191)
269 PF03354 Terminase_1: Phage Te 94.1 0.18 3.8E-06 61.7 9.5 148 162-314 1-164 (477)
270 PRK14087 dnaA chromosomal repl 94.1 0.27 5.8E-06 59.3 10.9 76 175-287 142-220 (450)
271 COG1435 Tdk Thymidine kinase [ 94.0 0.24 5.2E-06 51.6 8.7 92 175-287 5-96 (201)
272 PRK14088 dnaA chromosomal repl 94.0 0.37 8E-06 58.1 11.9 36 175-210 131-168 (440)
273 COG1444 Predicted P-loop ATPas 93.9 0.3 6.4E-06 61.1 10.9 137 156-316 208-358 (758)
274 PF05621 TniB: Bacterial TniB 93.9 0.16 3.5E-06 56.8 7.9 116 175-313 62-188 (302)
275 PRK14723 flhF flagellar biosyn 93.9 0.58 1.3E-05 59.2 13.4 123 174-324 185-314 (767)
276 PF05127 Helicase_RecD: Helica 93.8 0.02 4.3E-07 59.4 0.5 118 178-316 1-125 (177)
277 cd00984 DnaB_C DnaB helicase C 93.8 0.21 4.5E-06 55.1 8.6 47 172-218 11-61 (242)
278 cd01122 GP4d_helicase GP4d_hel 93.8 0.29 6.3E-06 55.0 9.9 40 171-210 27-67 (271)
279 PF13173 AAA_14: AAA domain 93.7 0.37 8E-06 47.4 9.2 34 174-208 2-35 (128)
280 PTZ00293 thymidine kinase; Pro 93.6 0.36 7.8E-06 51.5 9.5 86 174-286 4-90 (211)
281 TIGR01073 pcrA ATP-dependent D 93.5 0.28 6.1E-06 63.2 10.3 87 159-260 4-94 (726)
282 PRK04195 replication factor C 93.4 0.37 8.1E-06 58.9 10.7 22 174-195 39-60 (482)
283 PF05496 RuvB_N: Holliday junc 93.4 0.17 3.7E-06 54.2 6.6 21 175-195 51-71 (233)
284 TIGR01425 SRP54_euk signal rec 93.4 0.83 1.8E-05 54.2 12.9 121 176-316 102-226 (429)
285 TIGR02881 spore_V_K stage V sp 93.4 0.27 5.9E-06 54.9 8.7 22 175-196 43-64 (261)
286 PRK07764 DNA polymerase III su 93.4 0.21 4.5E-06 64.3 8.6 40 271-311 118-157 (824)
287 PHA02544 44 clamp loader, smal 93.4 0.28 6.2E-06 56.4 9.1 40 272-311 99-138 (316)
288 PRK11823 DNA repair protein Ra 93.2 0.55 1.2E-05 56.6 11.5 88 173-286 79-169 (446)
289 PRK06067 flagellar accessory p 93.2 0.5 1.1E-05 51.9 10.3 50 174-224 25-74 (234)
290 PRK14956 DNA polymerase III su 93.2 0.11 2.4E-06 62.1 5.4 21 176-196 42-62 (484)
291 COG0552 FtsY Signal recognitio 93.2 0.77 1.7E-05 51.9 11.5 122 176-316 141-271 (340)
292 cd03115 SRP The signal recogni 93.2 0.69 1.5E-05 48.1 10.8 33 177-209 3-35 (173)
293 PRK13709 conjugal transfer nic 93.1 1.2 2.6E-05 61.5 15.5 133 152-313 960-1099(1747)
294 PRK08691 DNA polymerase III su 93.1 0.22 4.8E-06 61.9 7.9 40 271-311 117-156 (709)
295 PF01695 IstB_IS21: IstB-like 93.1 0.13 2.8E-06 54.0 5.0 47 171-218 44-90 (178)
296 PRK14960 DNA polymerase III su 93.0 0.4 8.7E-06 59.3 9.9 39 272-311 117-155 (702)
297 PRK14958 DNA polymerase III su 93.0 0.13 2.9E-06 62.8 5.9 39 272-311 118-156 (509)
298 PRK13833 conjugal transfer pro 93.0 0.19 4.1E-06 57.6 6.7 55 160-215 129-187 (323)
299 PF13871 Helicase_C_4: Helicas 93.0 0.11 2.4E-06 57.7 4.6 76 516-591 52-127 (278)
300 KOG0991 Replication factor C, 93.0 0.091 2E-06 55.5 3.7 22 175-196 49-70 (333)
301 TIGR02880 cbbX_cfxQ probable R 93.0 0.46 9.9E-06 53.8 9.7 21 174-194 58-78 (284)
302 PRK12323 DNA polymerase III su 92.9 0.31 6.7E-06 60.1 8.7 22 176-197 40-61 (700)
303 PHA00729 NTP-binding motif con 92.9 0.53 1.2E-05 50.8 9.6 116 175-326 18-138 (226)
304 TIGR02928 orc1/cdc6 family rep 92.9 0.79 1.7E-05 53.9 12.1 21 175-195 41-61 (365)
305 PRK10867 signal recognition pa 92.9 1.2 2.7E-05 53.0 13.5 121 175-315 101-226 (433)
306 TIGR02760 TraI_TIGR conjugativ 92.8 0.46 9.9E-06 67.0 11.3 124 157-311 1017-1147(1960)
307 PRK05707 DNA polymerase III su 92.8 0.39 8.6E-06 55.4 9.0 38 160-197 4-45 (328)
308 TIGR02788 VirB11 P-type DNA tr 92.7 0.52 1.1E-05 54.1 9.9 42 171-213 141-182 (308)
309 PRK09112 DNA polymerase III su 92.6 0.78 1.7E-05 53.4 11.3 41 271-312 139-179 (351)
310 TIGR03877 thermo_KaiC_1 KaiC d 92.6 0.18 3.8E-06 55.6 5.7 51 173-224 20-70 (237)
311 PRK14086 dnaA chromosomal repl 92.6 0.62 1.3E-05 57.5 10.7 100 176-313 316-419 (617)
312 PRK07994 DNA polymerase III su 92.6 0.21 4.5E-06 62.3 6.7 20 177-196 41-60 (647)
313 COG2909 MalT ATP-dependent tra 92.5 0.51 1.1E-05 59.0 9.8 136 166-315 26-171 (894)
314 TIGR02785 addA_Gpos recombinat 92.5 0.31 6.8E-06 66.2 8.9 119 159-284 1-126 (1232)
315 smart00491 HELICc2 helicase su 92.5 0.3 6.5E-06 49.1 6.6 82 508-590 27-138 (142)
316 cd01121 Sms Sms (bacterial rad 92.5 0.49 1.1E-05 55.5 9.3 88 173-286 81-171 (372)
317 CHL00181 cbbX CbbX; Provisiona 92.5 0.64 1.4E-05 52.6 10.0 24 174-197 59-82 (287)
318 PRK14964 DNA polymerase III su 92.5 0.5 1.1E-05 57.2 9.5 21 175-195 36-56 (491)
319 COG2256 MGS1 ATPase related to 92.3 0.43 9.3E-06 54.9 8.1 35 175-212 49-83 (436)
320 COG2804 PulE Type II secretory 92.2 0.52 1.1E-05 56.1 8.9 49 159-208 241-291 (500)
321 PRK14961 DNA polymerase III su 92.1 0.21 4.5E-06 58.8 5.7 20 176-195 40-59 (363)
322 PF00004 AAA: ATPase family as 92.1 0.19 4.2E-06 49.2 4.7 20 177-196 1-20 (132)
323 TIGR01547 phage_term_2 phage t 92.1 0.26 5.6E-06 58.7 6.7 127 176-317 3-143 (396)
324 PF06745 KaiC: KaiC; InterPro 92.1 0.24 5.2E-06 54.0 5.9 130 173-314 18-160 (226)
325 PRK06995 flhF flagellar biosyn 92.0 2.5 5.4E-05 51.1 14.7 54 174-227 256-313 (484)
326 PF13177 DNA_pol3_delta2: DNA 92.0 0.78 1.7E-05 47.3 9.1 121 176-314 21-142 (162)
327 cd01393 recA_like RecA is a b 91.8 0.32 7E-06 52.9 6.5 99 174-285 19-126 (226)
328 TIGR00708 cobA cob(I)alamin ad 91.8 0.64 1.4E-05 48.1 8.1 131 176-315 7-141 (173)
329 KOG1001 Helicase-like transcri 91.7 0.91 2E-05 57.0 10.9 138 175-326 153-306 (674)
330 PRK05973 replicative DNA helic 91.6 0.21 4.6E-06 54.5 4.7 57 167-224 57-113 (237)
331 PRK14962 DNA polymerase III su 91.5 0.61 1.3E-05 56.5 8.9 21 176-196 38-58 (472)
332 PRK14721 flhF flagellar biosyn 91.5 1.9 4.1E-05 51.2 12.7 124 173-325 190-321 (420)
333 PRK13894 conjugal transfer ATP 91.4 0.32 7E-06 55.8 6.1 54 160-214 133-190 (319)
334 PRK13851 type IV secretion sys 91.4 0.26 5.7E-06 57.0 5.4 44 171-215 159-202 (344)
335 COG0630 VirB11 Type IV secreto 91.3 1.2 2.6E-05 51.0 10.6 113 145-284 115-228 (312)
336 TIGR00959 ffh signal recogniti 91.3 2.1 4.6E-05 51.1 13.0 120 176-315 101-225 (428)
337 PHA00350 putative assembly pro 91.2 1.1 2.3E-05 52.8 10.1 29 177-205 4-33 (399)
338 PRK14963 DNA polymerase III su 91.2 0.73 1.6E-05 56.3 9.2 20 177-196 39-58 (504)
339 TIGR03819 heli_sec_ATPase heli 91.2 2.4 5.2E-05 49.2 13.1 55 160-215 163-218 (340)
340 PRK13900 type IV secretion sys 91.2 0.48 1E-05 54.8 7.2 44 171-215 157-200 (332)
341 PRK08769 DNA polymerase III su 91.2 0.85 1.9E-05 52.3 9.2 139 159-314 4-153 (319)
342 PF05707 Zot: Zonular occluden 91.0 0.55 1.2E-05 49.9 7.0 31 177-207 3-34 (193)
343 TIGR03600 phage_DnaB phage rep 91.0 0.79 1.7E-05 55.1 9.2 40 170-209 190-230 (421)
344 PRK06645 DNA polymerase III su 90.9 1.1 2.4E-05 54.6 10.3 21 176-196 45-65 (507)
345 cd01130 VirB11-like_ATPase Typ 90.9 0.43 9.4E-06 50.4 6.1 52 159-211 9-61 (186)
346 PRK08451 DNA polymerase III su 90.9 0.97 2.1E-05 55.3 9.7 114 176-311 38-154 (535)
347 PF00265 TK: Thymidine kinase; 90.9 0.19 4E-06 52.5 3.2 37 176-212 3-39 (176)
348 PRK14952 DNA polymerase III su 90.7 0.62 1.3E-05 57.7 8.0 40 271-311 116-155 (584)
349 COG4962 CpaF Flp pilus assembl 90.7 0.52 1.1E-05 53.4 6.6 74 140-216 140-214 (355)
350 TIGR02688 conserved hypothetic 90.7 0.69 1.5E-05 54.2 7.9 34 169-202 204-238 (449)
351 PRK14949 DNA polymerase III su 90.6 0.41 8.9E-06 61.0 6.4 20 177-196 41-60 (944)
352 TIGR00678 holB DNA polymerase 90.6 1.4 3E-05 46.5 9.6 29 170-198 7-38 (188)
353 COG1197 Mfd Transcription-repa 90.5 0.69 1.5E-05 60.0 8.3 80 195-286 796-886 (1139)
354 PRK14969 DNA polymerase III su 90.5 0.89 1.9E-05 56.0 9.1 41 270-311 116-156 (527)
355 PRK14957 DNA polymerase III su 90.3 0.64 1.4E-05 57.1 7.6 40 271-311 117-156 (546)
356 PF05876 Terminase_GpA: Phage 90.3 0.56 1.2E-05 58.2 7.1 71 156-226 13-87 (557)
357 PRK07471 DNA polymerase III su 90.2 2.2 4.7E-05 50.1 11.6 44 270-314 138-181 (365)
358 PRK11034 clpA ATP-dependent Cl 90.2 1.7 3.6E-05 55.8 11.4 35 162-196 193-229 (758)
359 PRK09111 DNA polymerase III su 90.2 0.73 1.6E-05 57.4 8.1 41 270-311 129-169 (598)
360 TIGR02639 ClpA ATP-dependent C 90.1 1.4 3.1E-05 56.7 11.0 24 175-198 204-227 (731)
361 PRK06620 hypothetical protein; 90.0 0.65 1.4E-05 50.2 6.6 19 175-193 45-63 (214)
362 KOG1513 Nuclear helicase MOP-3 90.0 0.34 7.4E-06 59.2 4.7 153 159-314 264-454 (1300)
363 TIGR02655 circ_KaiC circadian 90.0 0.41 9E-06 58.5 5.7 58 166-224 250-312 (484)
364 PRK14955 DNA polymerase III su 90.0 1.2 2.5E-05 53.2 9.3 21 176-196 40-60 (397)
365 PRK05896 DNA polymerase III su 90.0 0.79 1.7E-05 56.5 7.9 22 175-196 39-60 (605)
366 PRK04328 hypothetical protein; 89.9 0.56 1.2E-05 52.1 6.2 51 173-224 22-72 (249)
367 PRK00440 rfc replication facto 89.9 2.6 5.7E-05 48.3 12.1 20 176-195 40-59 (319)
368 TIGR00767 rho transcription te 89.9 0.31 6.6E-06 56.9 4.2 30 171-201 165-194 (415)
369 COG4626 Phage terminase-like p 89.9 1.9 4E-05 52.0 10.6 150 154-313 56-224 (546)
370 PRK08506 replicative DNA helic 89.9 0.98 2.1E-05 55.0 8.7 109 171-286 189-315 (472)
371 PRK06904 replicative DNA helic 89.8 1.3 2.8E-05 53.8 9.6 135 171-312 218-382 (472)
372 PRK13342 recombination factor 89.7 1.1 2.5E-05 53.6 9.0 20 175-194 37-56 (413)
373 PRK14965 DNA polymerase III su 89.7 1.2 2.5E-05 55.7 9.3 41 270-311 116-156 (576)
374 PF01443 Viral_helicase1: Vira 89.5 0.48 1E-05 51.7 5.3 21 529-549 184-204 (234)
375 COG0470 HolB ATPase involved i 89.5 1.2 2.6E-05 51.2 8.9 120 175-311 24-146 (325)
376 TIGR00416 sms DNA repair prote 89.5 1.8 3.9E-05 52.3 10.5 89 173-286 93-183 (454)
377 cd01129 PulE-GspE PulE/GspE Th 89.4 0.71 1.5E-05 51.6 6.5 52 159-211 63-117 (264)
378 PRK05748 replicative DNA helic 89.3 0.95 2.1E-05 54.9 8.0 135 172-313 201-364 (448)
379 PF03969 AFG1_ATPase: AFG1-lik 89.3 2.8 6E-05 49.1 11.4 125 174-335 62-197 (362)
380 TIGR03346 chaperone_ClpB ATP-d 89.2 1.7 3.7E-05 57.0 10.7 22 175-196 195-216 (852)
381 PRK00080 ruvB Holliday junctio 89.0 0.82 1.8E-05 53.0 6.9 21 175-195 52-72 (328)
382 TIGR03878 thermo_KaiC_2 KaiC d 89.0 0.5 1.1E-05 52.7 5.0 37 173-209 35-71 (259)
383 KOG1133 Helicase of the DEAD s 88.9 0.6 1.3E-05 56.7 5.6 44 156-199 12-59 (821)
384 PRK10436 hypothetical protein; 88.9 0.69 1.5E-05 55.7 6.3 43 159-202 201-245 (462)
385 PRK13341 recombination factor 88.8 1.1 2.4E-05 57.0 8.4 40 273-317 109-148 (725)
386 PRK07414 cob(I)yrinic acid a,c 88.8 3 6.6E-05 43.3 10.0 131 176-315 23-159 (178)
387 PRK04841 transcriptional regul 88.8 1.6 3.4E-05 58.1 10.3 45 1097-1141 838-882 (903)
388 PF05729 NACHT: NACHT domain 88.7 1.8 3.9E-05 44.0 8.6 43 175-217 1-48 (166)
389 PF12846 AAA_10: AAA-like doma 88.7 0.62 1.3E-05 52.8 5.6 43 174-216 1-43 (304)
390 PRK07940 DNA polymerase III su 88.6 1.8 3.8E-05 51.4 9.3 22 175-196 37-58 (394)
391 PRK06964 DNA polymerase III su 88.5 1.9 4.2E-05 49.8 9.4 36 161-196 3-43 (342)
392 cd01123 Rad51_DMC1_radA Rad51_ 88.5 0.7 1.5E-05 50.6 5.6 38 173-210 18-61 (235)
393 PRK14959 DNA polymerase III su 88.2 0.67 1.4E-05 57.4 5.7 22 176-197 40-61 (624)
394 PF00437 T2SE: Type II/IV secr 88.2 0.46 9.9E-06 53.4 4.0 42 172-214 125-167 (270)
395 PF03796 DnaB_C: DnaB-like hel 88.2 0.61 1.3E-05 52.0 5.0 38 173-210 18-56 (259)
396 PRK14948 DNA polymerase III su 88.1 1.1 2.3E-05 56.3 7.5 23 175-197 39-61 (620)
397 PRK03992 proteasome-activating 88.1 1.4 3E-05 52.3 8.1 21 175-195 166-186 (389)
398 TIGR02237 recomb_radB DNA repa 88.0 0.58 1.3E-05 50.2 4.6 39 173-211 11-49 (209)
399 TIGR01420 pilT_fam pilus retra 88.0 1.8 4E-05 50.4 8.9 41 173-214 121-163 (343)
400 TIGR03881 KaiC_arch_4 KaiC dom 88.0 0.59 1.3E-05 51.0 4.7 38 173-210 19-56 (229)
401 COG3973 Superfamily I DNA and 87.9 1.7 3.6E-05 52.4 8.3 65 163-228 213-285 (747)
402 PRK14950 DNA polymerase III su 87.9 2.2 4.9E-05 53.4 10.2 20 176-195 40-59 (585)
403 COG2255 RuvB Holliday junction 87.8 1.2 2.5E-05 49.1 6.4 22 175-196 53-74 (332)
404 PHA00012 I assembly protein 87.8 3 6.4E-05 47.2 9.7 34 177-210 4-37 (361)
405 PRK14953 DNA polymerase III su 87.8 1.2 2.7E-05 54.2 7.5 20 177-196 41-60 (486)
406 PRK09376 rho transcription ter 87.7 0.66 1.4E-05 54.0 4.9 35 165-200 157-194 (416)
407 TIGR02538 type_IV_pilB type IV 87.6 0.89 1.9E-05 56.6 6.3 43 159-202 299-343 (564)
408 COG2109 BtuR ATP:corrinoid ade 87.6 3.5 7.5E-05 42.9 9.4 39 176-214 30-68 (198)
409 PRK14951 DNA polymerase III su 87.6 0.74 1.6E-05 57.4 5.5 21 176-196 40-60 (618)
410 PRK07133 DNA polymerase III su 87.4 1.3 2.8E-05 55.8 7.5 45 980-1030 603-648 (725)
411 PRK05563 DNA polymerase III su 87.3 1.3 2.9E-05 55.0 7.6 20 176-195 40-59 (559)
412 PRK07004 replicative DNA helic 87.2 1.4 3E-05 53.4 7.5 135 172-313 211-373 (460)
413 COG1219 ClpX ATP-dependent pro 87.1 0.42 9.1E-06 53.1 2.7 22 173-194 96-117 (408)
414 TIGR02012 tigrfam_recA protein 87.0 1 2.2E-05 51.6 5.8 51 167-217 42-98 (321)
415 PRK14954 DNA polymerase III su 87.0 2.1 4.6E-05 53.5 9.1 21 176-196 40-60 (620)
416 PHA03372 DNA packaging termina 86.9 8 0.00017 47.3 13.3 140 173-329 201-351 (668)
417 TIGR03880 KaiC_arch_3 KaiC dom 86.8 0.88 1.9E-05 49.5 5.1 51 173-224 15-65 (224)
418 PRK08760 replicative DNA helic 86.8 1.3 2.8E-05 53.9 7.0 133 173-313 228-388 (476)
419 COG0467 RAD55 RecA-superfamily 86.8 0.82 1.8E-05 51.0 5.0 51 173-224 22-72 (260)
420 cd01394 radB RadB. The archaea 86.8 0.78 1.7E-05 49.6 4.7 43 167-209 7-54 (218)
421 PRK07399 DNA polymerase III su 86.7 2.6 5.6E-05 48.4 9.0 23 175-197 27-49 (314)
422 PRK08699 DNA polymerase III su 86.6 3.2 6.9E-05 47.9 9.7 36 161-196 3-43 (325)
423 PF13481 AAA_25: AAA domain; P 86.5 1.7 3.7E-05 45.8 7.0 54 173-227 31-94 (193)
424 TIGR02238 recomb_DMC1 meiotic 86.4 1.5 3.3E-05 50.2 6.9 61 167-227 84-155 (313)
425 TIGR02533 type_II_gspE general 86.3 1 2.2E-05 54.8 5.8 50 158-208 224-276 (486)
426 PRK09165 replicative DNA helic 86.2 2.4 5.2E-05 52.0 8.9 106 173-286 216-354 (497)
427 TIGR03743 SXT_TraD conjugative 86.2 1.9 4.2E-05 54.2 8.2 54 174-228 176-231 (634)
428 TIGR00665 DnaB replicative DNA 86.2 2.2 4.8E-05 51.5 8.5 39 172-210 193-232 (434)
429 cd00983 recA RecA is a bacter 86.1 1.2 2.6E-05 51.0 5.8 51 167-217 42-98 (325)
430 COG1222 RPT1 ATP-dependent 26S 85.8 0.25 5.4E-06 55.9 0.1 20 174-193 185-204 (406)
431 TIGR02397 dnaX_nterm DNA polym 85.7 3.1 6.7E-05 48.6 9.4 20 176-195 38-57 (355)
432 COG1221 PspF Transcriptional r 85.7 2.9 6.3E-05 49.1 8.7 87 173-286 100-186 (403)
433 PF01637 Arch_ATPase: Archaeal 85.7 1.2 2.6E-05 48.2 5.4 38 174-212 20-58 (234)
434 COG3972 Superfamily I DNA and 85.6 4 8.6E-05 48.2 9.5 66 160-226 163-230 (660)
435 COG2805 PilT Tfp pilus assembl 85.6 1.2 2.5E-05 49.6 5.0 42 175-217 126-177 (353)
436 PF03237 Terminase_6: Terminas 85.5 5.2 0.00011 46.7 11.2 102 178-290 1-114 (384)
437 KOG0726 26S proteasome regulat 85.3 0.72 1.6E-05 50.5 3.2 19 173-191 218-236 (440)
438 PHA02542 41 41 helicase; Provi 85.2 2.1 4.6E-05 51.9 7.7 36 174-209 190-225 (473)
439 CHL00176 ftsH cell division pr 85.2 2.8 6.1E-05 52.8 8.9 21 175-195 217-237 (638)
440 TIGR00595 priA primosomal prot 85.1 9.3 0.0002 47.0 13.3 75 441-549 25-99 (505)
441 PRK09354 recA recombinase A; P 85.1 1.4 2.9E-05 51.0 5.6 51 167-217 47-103 (349)
442 TIGR00580 mfd transcription-re 85.0 2.9 6.4E-05 54.8 9.3 79 195-285 653-742 (926)
443 PRK09087 hypothetical protein; 85.0 2.5 5.5E-05 46.1 7.5 18 175-192 45-62 (226)
444 PRK05636 replicative DNA helic 85.0 2.1 4.6E-05 52.4 7.5 36 174-209 265-301 (505)
445 PF02534 T4SS-DNA_transf: Type 85.0 0.99 2.1E-05 55.1 4.8 48 175-224 45-92 (469)
446 PRK13695 putative NTPase; Prov 84.9 8.2 0.00018 40.1 11.1 30 176-205 2-31 (174)
447 TIGR00635 ruvB Holliday juncti 84.8 1.7 3.7E-05 49.7 6.4 19 175-193 31-49 (305)
448 PRK09361 radB DNA repair and r 84.7 1.1 2.4E-05 48.7 4.6 45 167-211 11-60 (225)
449 TIGR02655 circ_KaiC circadian 84.6 0.92 2E-05 55.5 4.3 51 173-224 20-71 (484)
450 PRK10865 protein disaggregatio 84.6 3.8 8.2E-05 53.7 10.1 23 175-197 200-222 (857)
451 TIGR03345 VI_ClpV1 type VI sec 84.6 3.1 6.8E-05 54.3 9.3 34 176-210 598-631 (852)
452 PRK10917 ATP-dependent DNA hel 84.6 2.8 6E-05 53.6 8.7 80 440-549 309-389 (681)
453 TIGR02640 gas_vesic_GvpN gas v 84.6 2.1 4.6E-05 47.8 6.9 31 165-195 12-42 (262)
454 COG0210 UvrD Superfamily I DNA 84.6 1.9 4.2E-05 55.0 7.3 87 159-259 2-92 (655)
455 KOG2228 Origin recognition com 84.4 9.4 0.0002 43.3 11.4 118 173-314 48-181 (408)
456 PRK10689 transcription-repair 84.4 3.2 6.9E-05 55.8 9.4 80 194-285 801-891 (1147)
457 TIGR03754 conj_TOL_TraD conjug 84.4 2.7 5.9E-05 52.3 8.2 61 174-235 180-243 (643)
458 PRK06871 DNA polymerase III su 84.3 3.7 8E-05 47.3 8.7 37 161-197 4-47 (325)
459 PRK08840 replicative DNA helic 84.0 3.1 6.8E-05 50.4 8.3 53 171-224 214-267 (464)
460 COG0468 RecA RecA/RadA recombi 83.8 1.7 3.6E-05 48.7 5.5 58 167-224 48-110 (279)
461 COG3267 ExeA Type II secretory 83.6 2.3 5E-05 46.3 6.2 47 170-217 46-93 (269)
462 PRK06321 replicative DNA helic 83.5 3.7 7.9E-05 49.9 8.7 133 173-313 225-388 (472)
463 PRK05580 primosome assembly pr 83.2 12 0.00026 47.9 13.5 75 441-549 190-264 (679)
464 PRK06647 DNA polymerase III su 83.2 3 6.6E-05 51.7 7.9 21 176-196 40-60 (563)
465 PRK06090 DNA polymerase III su 83.1 4.1 8.9E-05 46.8 8.4 38 160-197 4-48 (319)
466 cd01131 PilT Pilus retraction 82.9 1.5 3.2E-05 46.8 4.5 37 176-213 3-41 (198)
467 TIGR00763 lon ATP-dependent pr 82.6 1.4 3.1E-05 57.1 5.1 21 174-194 347-367 (775)
468 cd01127 TrwB Bacterial conjuga 82.3 1.1 2.5E-05 53.5 3.7 45 172-216 40-84 (410)
469 PF10443 RNA12: RNA12 protein; 81.5 4.3 9.3E-05 47.7 7.8 50 274-324 149-203 (431)
470 TIGR03689 pup_AAA proteasome A 81.4 3.4 7.3E-05 50.4 7.3 21 174-194 216-236 (512)
471 PF08423 Rad51: Rad51; InterP 81.4 1.1 2.4E-05 49.9 2.9 109 166-285 25-145 (256)
472 PRK08006 replicative DNA helic 81.3 5.4 0.00012 48.5 9.0 134 173-313 223-385 (471)
473 TIGR01242 26Sp45 26S proteasom 81.3 3.3 7.2E-05 48.7 7.1 22 174-195 156-177 (364)
474 PRK14873 primosome assembly pr 81.3 20 0.00044 45.4 14.3 123 440-603 187-313 (665)
475 PRK12608 transcription termina 81.0 2.4 5.2E-05 49.3 5.5 38 162-200 118-158 (380)
476 TIGR03345 VI_ClpV1 type VI sec 81.0 5.1 0.00011 52.4 9.2 22 175-196 209-230 (852)
477 PRK14971 DNA polymerase III su 80.9 6.1 0.00013 49.7 9.5 40 269-309 117-156 (614)
478 PRK07773 replicative DNA helic 80.9 3.5 7.7E-05 54.3 7.8 133 173-313 216-376 (886)
479 PRK06305 DNA polymerase III su 80.9 4.4 9.6E-05 49.0 8.1 23 176-198 41-63 (451)
480 cd02034 CooC The accessory pro 80.8 14 0.00031 35.7 10.0 32 177-208 2-33 (116)
481 CHL00095 clpC Clp protease ATP 80.7 6.5 0.00014 51.5 10.1 24 175-198 201-224 (821)
482 KOG0701 dsRNA-specific nucleas 80.6 1.3 2.8E-05 59.9 3.5 58 513-578 342-399 (1606)
483 KOG0742 AAA+-type ATPase [Post 80.5 2.2 4.8E-05 49.0 4.8 17 175-191 385-401 (630)
484 PF04408 HA2: Helicase associa 80.2 3.1 6.7E-05 39.2 5.1 59 988-1050 3-61 (102)
485 KOG0058 Peptide exporter, ABC 80.0 3.3 7.2E-05 51.3 6.5 130 172-304 492-653 (716)
486 cd01126 TraG_VirD4 The TraG/Tr 80.0 1.2 2.7E-05 52.7 3.0 50 176-228 1-50 (384)
487 PRK14970 DNA polymerase III su 80.0 5.7 0.00012 46.8 8.5 19 176-194 41-59 (367)
488 TIGR01241 FtsH_fam ATP-depende 80.0 5.2 0.00011 49.2 8.4 21 175-195 89-109 (495)
489 PF02572 CobA_CobO_BtuR: ATP:c 79.9 4.3 9.4E-05 42.1 6.4 128 176-314 5-139 (172)
490 KOG0741 AAA+-type ATPase [Post 79.9 4.5 9.8E-05 48.1 7.2 106 175-311 257-376 (744)
491 PRK05595 replicative DNA helic 79.8 1.8 4E-05 52.3 4.4 51 173-224 200-251 (444)
492 PF13555 AAA_29: P-loop contai 79.5 2.1 4.6E-05 36.2 3.3 20 174-193 23-42 (62)
493 PF10412 TrwB_AAD_bind: Type I 79.4 1.9 4.2E-05 51.1 4.3 44 173-216 14-57 (386)
494 PF05894 Podovirus_Gp16: Podov 79.4 20 0.00043 40.4 11.6 129 177-314 20-161 (333)
495 TIGR02524 dot_icm_DotB Dot/Icm 79.1 3.3 7.1E-05 48.4 6.0 26 173-199 133-158 (358)
496 KOG2004 Mitochondrial ATP-depe 79.0 3.8 8.3E-05 50.5 6.5 110 159-301 415-533 (906)
497 cd00544 CobU Adenosylcobinamid 78.8 2.9 6.3E-05 43.4 4.8 45 177-224 2-46 (169)
498 cd03221 ABCF_EF-3 ABCF_EF-3 E 78.6 4.3 9.4E-05 40.8 6.0 32 270-301 85-116 (144)
499 TIGR01243 CDC48 AAA family ATP 78.6 4.6 9.9E-05 52.2 7.7 21 173-193 211-231 (733)
500 TIGR02858 spore_III_AA stage I 78.6 15 0.00033 41.2 10.8 27 167-193 101-130 (270)
No 1
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=5.1e-148 Score=1259.16 Aligned_cols=884 Identities=29% Similarity=0.422 Sum_probs=727.5
Q ss_pred HhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeE
Q 001047 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNV 231 (1174)
Q Consensus 152 l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v 231 (1174)
-++.|+|+++|||..||.++.++++|+|+|+|++|||+++.++|...++.++||||++|.+||+||+|++|...|++ |
T Consensus 122 pAk~YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~D--V 199 (1041)
T KOG0948|consen 122 PAKTYPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKD--V 199 (1041)
T ss_pred cccCCCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcc--c
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred EEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 232 GLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 232 ~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
|++|||.++|+++.++|||+|+|++|||+ +...+..+.|||+||+|||.|..||.+|++.++.+|+++++++||
T Consensus 200 GLMTGDVTInP~ASCLVMTTEILRsMLYR------GSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLS 273 (1041)
T KOG0948|consen 200 GLMTGDVTINPDASCLVMTTEILRSMLYR------GSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLS 273 (1041)
T ss_pred ceeecceeeCCCCceeeeHHHHHHHHHhc------cchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEe
Confidence 99999999999999999999999999998 567788999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHhcccC-ceeeecCCCCccccEEeecc--cccccccccccccccchhhh--hhhhhcccccCCCccCC
Q 001047 312 ATVANADELAGWIGQIHG-KTELITSSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLS--LNYLQLSTSEVKPYKDG 386 (1174)
Q Consensus 312 ATl~n~~~~~~~l~~~~~-~~~~i~~~~rpvpl~~~~~~--~~~~~~~~~~~~~~~~~~l~--~~~l~~~~~~~~~~~~~ 386 (1174)
||+||+.+|++|+..++. +|+++++++||+||++|+.+ ..+++.++++++.+...... +..+...... ..++..
T Consensus 274 ATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~-~~~~~~ 352 (1041)
T KOG0948|consen 274 ATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGES-DGKKKA 352 (1041)
T ss_pred ccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCC-cccccc
Confidence 999999999999999886 89999999999999999665 67899999998887665442 2222111111 111111
Q ss_pred CccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCC
Q 001047 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL 466 (1174)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~ 466 (1174)
....++....+. ...-.++.++++.+..++..|+|||+||+++|+.+|.++.+..+
T Consensus 353 ~~k~~kG~~~~~------------------------~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldf 408 (1041)
T KOG0948|consen 353 NKKGRKGGTGGK------------------------GPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDF 408 (1041)
T ss_pred ccccccCCcCCC------------------------CCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcC
Confidence 111111100000 01123567788888889999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHHhhCCccchh-----hHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCc
Q 001047 467 LDECEMSEVELALKRFRILYPDAVRE-----PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 541 (1174)
Q Consensus 467 ~~~~e~~~i~~~~~~~~~~~~~~~~~-----~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDi 541 (1174)
.+++++..+..++......++++++. .++++|.+||++|||||.|..++.|+.+|++|.+||||||+|+++|+||
T Consensus 409 N~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNM 488 (1041)
T KOG0948|consen 409 NTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNM 488 (1041)
T ss_pred CChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCC
Confidence 99999999999999999988887765 6778999999999999999999999999999999999999999999999
Q ss_pred CCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhhCCCcceeeeeccchhHHH
Q 001047 542 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 621 (1174)
Q Consensus 542 P~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~~~~~pl~S~f~~~y~~vl 621 (1174)
|+.+|||....||||...+|+|.++|+||+|||||+|.|..|.||++.+..+++.....++.+..+||.|.|+.+|||+|
T Consensus 489 PAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiL 568 (1041)
T KOG0948|consen 489 PAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMIL 568 (1041)
T ss_pred cceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhchhccccCchhHHHHHHhCCCHHHHHHHHHhhHHhhhccchhhHhHHHHHHHHHHHHHHHhhhchhhhhhHHhhh
Q 001047 622 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRL 701 (1174)
Q Consensus 622 nll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sf~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1174)
|||+ ..+.++ +.+|++||.|||+...++..++++.+++++++.+.. .+
T Consensus 569 NLlR-----------------vEei~p---e~~l~~SF~QFQ~~~~~P~i~~kl~~~~~~~~~i~i-------~~----- 616 (1041)
T KOG0948|consen 569 NLLR-----------------VEEISP---EYMLERSFHQFQNYKALPDIEEKLKQLEEELDSINI-------PN----- 616 (1041)
T ss_pred HHHH-----------------HccCCH---HHHHHHHHHHHhhhhhcchHHHHHHHHHHHhhcccC-------CC-----
Confidence 9998 457775 899999999999999977777777777777666642 22
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcceEE----EeeecCCCcEeecceEEecccC
Q 001047 702 LSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLC----LQYKDSEGVEHSVPAVYLGKFD 777 (1174)
Q Consensus 702 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 777 (1174)
+..+.+|+.|+.+++.+.+.. ++.+ .+ |.+++||++ |..+.. |.. ..+.|++.-..
T Consensus 617 --E~~v~~yh~l~~ql~~~~k~i---~~~~-~~------------P~~~l~fLq~GRlV~v~~g-~~d-~~WGvvv~f~k 676 (1041)
T KOG0948|consen 617 --EEEVKEYHDLELQLEKYGKDI---REVI-TH------------PKYCLPFLQPGRLVKVKVG-GDD-FFWGVVVNFIK 676 (1041)
T ss_pred --hHHHHHHHHHHHHHHHHHHHH---HHHH-cC------------cchhcccccCCceEEEecC-CCC-CceeEEEEEEe
Confidence 678999999999998874433 3332 11 677777776 222211 111 11222221000
Q ss_pred CCchhhhhcc-----cccchhhhhhhhccCCCCCCCCCCCCCccccccCCCCcee--eecccceeeEee--cCCCCcccc
Q 001047 778 SLDSSKLKNM-----ASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWY--TFTEKWIKTVYR--IGFPNVALA 848 (1174)
Q Consensus 778 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~ 848 (1174)
..+.++.... .|+++++++|......... .....|+. .+..+.|. ++....+..++. ..+|
T Consensus 677 ~~~~~~~~~~~~p~e~Y~vdvll~~~~~~~~~~~--~~~~~p~~---~~ek~~~~vvpv~l~~i~~is~~r~~iP----- 746 (1041)
T KOG0948|consen 677 RKNSSKNSDQVGPHESYIVDVLLHCSTESSPVGA--KKVNVPPR---PNEKGEMEVVPVLLTLIDAISSIRLYIP----- 746 (1041)
T ss_pred ccCCCCCccccCCCcceEEEEEeeeecccccccc--CcCCCCCC---CCCCCceEEEeeeHHHHhhhhHHHhcCc-----
Confidence 0001111111 5677888877532221110 01111211 12334444 344555555544 2223
Q ss_pred ccCCCChhhhhhhhhhhhHHHHHhhhhhccCcccccCcccccccccCCCCcccccchhhhhhhccccchhHHhHHHHHHH
Q 001047 849 QGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTK 928 (1174)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1174)
++..|.+.+.. .... .+++.. ++++|+|+|||+.+ |.++ ...+....++
T Consensus 747 -~dl~~~d~r~~-------~~k~--v~e~~~-----------rfp~gip~LdPv~d------M~I~----~~~~~~~~~k 795 (1041)
T KOG0948|consen 747 -KDLRSVDARLS-------VLKA--VQEVKS-----------RFPDGIPLLDPVKD------MNIK----DVEFKKLVKK 795 (1041)
T ss_pred -ccccCcchHHH-------HHHH--HHHHHH-----------hcCCCCCCcChhhc------cCcc----chHHHHHHHH
Confidence 23333222211 1111 333343 34889999999876 8887 5677888999
Q ss_pred HHHHHHHHHhccCcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccc-cHHHHhhHHHHHhhcCCccCCCCccChh
Q 001047 929 VARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPS-GWKEFLRISNVIHETRALDINTQVIFPL 1007 (1174)
Q Consensus 929 ~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~-~~~~f~~~~~VL~~lgyl~~~~~~vt~~ 1007 (1174)
++.|+.++..||.|..+. +++.++.++++..|..++++|+++++..+.. +++|..+|.+||++|||++.++ +|..|
T Consensus 796 ~e~lE~~l~~hp~~k~~~--~~~~~~~f~~K~~l~~~ik~lk~~l~~~~~i~~ldELk~RkRVLrrLG~~t~dd-vie~K 872 (1041)
T KOG0948|consen 796 IESLEARLESHPLHKSSE--LEELYKEFQRKETLRAEIKDLKAELKSSQAILQLDELKNRKRVLRRLGYCTSDD-VIELK 872 (1041)
T ss_pred HHHHHHhhccCcccCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCC-eEEEc
Confidence 999999999999999876 5677779999999999999999999999887 5666669999999999999886 99999
Q ss_pred hHHHHhhcCCchHHHHHHHHhcccCCCCHHhHHHHHhhhccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 001047 1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQ 1087 (1174)
Q Consensus 1008 Gr~a~~i~~~~eLllte~l~~g~~~~L~p~~laA~~s~~v~e~~~~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 1087 (1174)
||+||+|+++|||++|||||+|+|++|+|+|+||+||||||++ +. .....+.++|+.++.+|++.|++|++|+
T Consensus 873 GrvACEIsSgDELlLTEliFnG~Fndl~~eq~aaLLSCfVf~e---ks----~e~~~l~~el~~~l~~lqe~ArrIAkVs 945 (1041)
T KOG0948|consen 873 GRVACEISSGDELLLTELIFNGIFNDLPVEQAAALLSCFVFQE---KS----SEAPKLKEELAGPLRQLQESARRIAKVS 945 (1041)
T ss_pred ceEEEEecccchHHHHHHHHhccccCCCHHHHHHHHhheeehh---cc----cccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 55 3455678999999999999999999999
Q ss_pred HHcCCCCCCC-----CChhHHHHHHHHhCCCCHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHH
Q 001047 1088 EKHGVEIPCC-----LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDA 1160 (1174)
Q Consensus 1088 ~~~~~~~~~~-----~~~~l~~~v~~Wa~G~~~~~i~~~t~l~eGd~vR~~rrl~dll~Qi~~~~~~--~~~l~~~~~~a 1160 (1174)
.+|+++++.+ |+|+||++||+||+|+||.+||++|++|||+|||++|||+|||||+.+||.. |.+|..|+.+|
T Consensus 946 ~ecKlEide~~Yv~sFkp~LMdvVy~W~~GatF~eIckmTdvfEGSiIR~~RRLeElLrQl~~AAk~iGnteLe~Kf~~~ 1025 (1041)
T KOG0948|consen 946 KECKLEIDEEDYVESFKPELMDVVYAWAKGATFAEICKMTDVFEGSIIRTFRRLEELLRQLIDAAKVIGNTELENKFEEA 1025 (1041)
T ss_pred HhhccccCHHHHHHhcChHHHHHHHHHHccccHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 9999999877 9999999999999999999999999999999999999999999999999987 99999999999
Q ss_pred HhccCCCCccc
Q 001047 1161 SNVMDRPPISE 1171 (1174)
Q Consensus 1161 ~~~i~R~~v~~ 1171 (1174)
+..|+||||..
T Consensus 1026 ~~~ikRDIVFA 1036 (1041)
T KOG0948|consen 1026 IKKIKRDIVFA 1036 (1041)
T ss_pred HHHHhhceeeh
Confidence 99999999975
No 2
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=5.3e-138 Score=1203.89 Aligned_cols=959 Identities=34% Similarity=0.484 Sum_probs=759.6
Q ss_pred hhhHHHHHHHHHHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeE
Q 001047 126 EFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205 (1174)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rv 205 (1174)
+++|....+......+| ...++.+...|+|.+++||++||.++.+|.+|+|+|||++|||++|+++|..+-.++.|+
T Consensus 267 k~~wa~~vd~~~~~~df---~~lVpe~a~~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~ 343 (1248)
T KOG0947|consen 267 KFEWAHVVDLSSLVEDF---YQLVPEMALIYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRT 343 (1248)
T ss_pred cccceeeeecccchHHH---HHhchhHHhhCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccce
Confidence 45555544433333332 344667888999999999999999999999999999999999999999999888899999
Q ss_pred EEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccc
Q 001047 206 FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285 (1174)
Q Consensus 206 lvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l 285 (1174)
+|++|.|||+||++++|++.||+ ||++|||+.+++++.|+|||+|+|++|||+ +...++++.||||||+||+
T Consensus 344 iYTSPIKALSNQKfRDFk~tF~D--vgLlTGDvqinPeAsCLIMTTEILRsMLYr------gadliRDvE~VIFDEVHYi 415 (1248)
T KOG0947|consen 344 IYTSPIKALSNQKFRDFKETFGD--VGLLTGDVQINPEASCLIMTTEILRSMLYR------GADLIRDVEFVIFDEVHYI 415 (1248)
T ss_pred EecchhhhhccchHHHHHHhccc--cceeecceeeCCCcceEeehHHHHHHHHhc------ccchhhccceEEEeeeeec
Confidence 99999999999999999999998 889999999999999999999999999999 4556788999999999999
Q ss_pred ccCCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccC-ceeeecCCCCccccEEeeccccccccccccccccc
Q 001047 286 SDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM 364 (1174)
Q Consensus 286 ~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~-~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~ 364 (1174)
.|..||.+|+++++++|+++++|+||||+||+.+|++|++..++ .+.++.+..|||||+|++..+..+++++++.+.++
T Consensus 416 ND~eRGvVWEEViIMlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl 495 (1248)
T KOG0947|consen 416 NDVERGVVWEEVIIMLPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFL 495 (1248)
T ss_pred ccccccccceeeeeeccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhh
Confidence 99999999999999999999999999999999999999999987 45677777999999999999999999999999888
Q ss_pred chhhhhhhhhcccccCCCccCC---CccccccccccCCC-CCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCC
Q 001047 365 NRKLSLNYLQLSTSEVKPYKDG---GSRRRNSRKHADMN-SNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRD 440 (1174)
Q Consensus 365 ~~~l~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 440 (1174)
...+...+.... ...+++... ....+...+++.+. ..++ .+... .....++.+ +...+++..+...+
T Consensus 496 ~~~~~~a~~~~~-~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g------~~r~~-~~~~nrr~~-~~~l~lin~L~k~~ 566 (1248)
T KOG0947|consen 496 LKGIKDAKDSLK-KEAKFVDVEKSDARGGRGSQKRGGKTNYHNG------GSRGS-GIGKNRRKQ-PTWLDLINHLRKKN 566 (1248)
T ss_pred hhcchhhhhhhc-ccccccccccccccccccccccCCcCCCCCC------Ccccc-ccccccccc-chHHHHHHHHhhcc
Confidence 876655444333 111111110 00111111111111 1111 00000 111111121 56788899999999
Q ss_pred CCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccch-----hhHHhhhccceeEecCCCCHHHHH
Q 001047 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVR-----EPAIKGLLKGVAAHHAGCLPIWKS 515 (1174)
Q Consensus 441 ~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~-----~~l~~~L~~gv~~~Hsgl~~~~R~ 515 (1174)
..|+||||||++.|+..|+.|.+.++++.+++++++.+++++...++..++ ..+.++|.+|+++||||+.|..++
T Consensus 567 lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE 646 (1248)
T KOG0947|consen 567 LLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKE 646 (1248)
T ss_pred cCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHH
Confidence 999999999999999999999999999999999999999999999888887 367788999999999999999999
Q ss_pred HHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC-CC
Q 001047 516 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY-EG 594 (1174)
Q Consensus 516 ~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~-~~ 594 (1174)
.|+.+|++|.+||||||+|+|+|||||++++||.+++|+||+..+.+.+.+|+||+|||||+|.|..|++|+++... ++
T Consensus 647 ~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~ 726 (1248)
T KOG0947|consen 647 VVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPS 726 (1248)
T ss_pred HHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887 88
Q ss_pred HHHHHHHhhCCCcceeeeeccchhHHHHHhhhchhccccCchhHHHHHHhCCCHHHHHHHHHhhHHhhhccchhhHhHHH
Q 001047 595 AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDE 674 (1174)
Q Consensus 595 ~~~~~~~~~~~~~pl~S~f~~~y~~vlnll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sf~~~~~~~~~~~~~~~ 674 (1174)
...+.+++.+.+.+|+|||+.+|+||||||+.. ..++++|+++||+.|.+.+..++.++.
T Consensus 727 ~a~l~~li~G~~~~L~SQFRlTY~MILnLLRve--------------------~lrvEdm~krSf~E~~s~~~~~~~eq~ 786 (1248)
T KOG0947|consen 727 AATLKRLIMGGPTRLESQFRLTYGMILNLLRVE--------------------ALRVEDMMKRSFSEFVSQRLSPEHEQE 786 (1248)
T ss_pred HHHHhhHhcCCCchhhhhhhhHHHHHHHHHHHH--------------------HHHHHHHHHHHhhhhhhhhcCHHHHHH
Confidence 999999999999999999999999999999832 246899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhchhhhhhHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcceE
Q 001047 675 LCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFL 754 (1174)
Q Consensus 675 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 754 (1174)
|.++++++..++...+.-.. ..+.+.+ +.+.+|.....++.....+....++.++..|+..+++ ++ ..+.++|+
T Consensus 787 l~~~~eel~sie~s~c~~~~-~~l~kyl--~a~~e~~e~~~~l~~~~~~s~~~~~~l~~GR~vv~k~-~~--~~~~lg~v 860 (1248)
T KOG0947|consen 787 LKELDEELLSIEESDCAIDL-KDLRKYL--SAYEEITEYNEKLREEKMKSANILRILKEGRVVVLKN-LK--EENNLGVV 860 (1248)
T ss_pred HHHHHHHHhhhcccccccch-HHHHHHH--HHHHHHHHHHHHHHHHHhhchhhhhhhhcCcEEEEcC-hh--hhcccceE
Confidence 99999888888765532210 1111111 1233444444444443333333345555555555554 33 24667777
Q ss_pred EEeeecCCCcEeecceEEecccCCCchh--hhhcccccchhhhhhhhccCCCCCCCCCCCCCccccccCCCCceeeeccc
Q 001047 755 CLQYKDSEGVEHSVPAVYLGKFDSLDSS--KLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEK 832 (1174)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1174)
+....+..|+...+.++...+.+..+.. ....+..+-+.+..- ......+| +++.++.++.|++.+..
T Consensus 861 l~~s~~t~~~~~~~~~~~~~p~~~~~~~~~~s~a~~~~p~~l~af---------~~~~~~~~-~~~~~~~~~~~~~~~v~ 930 (1248)
T KOG0947|consen 861 LKVSLNTNGRVCVVLVAYLKPLDNKNGSLDPSFALNLIPDSLLAF---------EKFFPNVP-RNVPLGSLNPLYLSGVT 930 (1248)
T ss_pred EEEecCCCcceEEEEEeeccCCcCcCCCcCcccccccCcchhhcc---------ccccCCcc-cccceecccccchhccc
Confidence 7666666677666666555544332100 000000011111110 00011222 34457788888876655
Q ss_pred ceeeEeecCCCCccccccCCCChhhhhhhhhhhhHHHHHhhhhhccCcccccCcccccccccCCCCcccccchhhhhhhc
Q 001047 833 WIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMS 912 (1174)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 912 (1174)
| +..+||++....+...+...... .++.|..++....+-++..+++..++.|.. |+.+...++.++.++.
T Consensus 931 ~----~~~g~~~ie~l~~~~~~~~~~~~----~D~~~aal~~~~~~~l~l~~~~~~~~~~~e--pv~~~k~kd~e~~~~~ 1000 (1248)
T KOG0947|consen 931 A----YVKGVPNIEILCGDALRQIIGKV----ADGQKAALNESTAQVLDLLEGSLETPTWKE--PVNDSKLKDDEVVEML 1000 (1248)
T ss_pred h----hhcCCcchhhhhccccccccccc----cccHHHHHHHHHHHhhhhhhcCccCcchhh--hhhhhhhccHHHHHHH
Confidence 5 45566766655554444433222 344666665555556666677777776665 6665554555544433
Q ss_pred cccchhHHhHHHHHHHHHHHHHHHHhccCcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHhhHHHHHh
Q 001047 913 FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIH 992 (1174)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~VL~ 992 (1174)
. +-..+.+.+...||+.|++ +++|+....+..+++.+++.|+-++......+.++|.++++||+
T Consensus 1001 l--------------~~~n~~~~~~~~~~i~c~~--f~~h~s~~~~~~~~~~ei~~L~~~~sd~~L~l~pey~~RlevLk 1064 (1248)
T KOG0947|consen 1001 L--------------ERTNLQNLIQGNPCISCPK--FDQHYSLARREYKIEKEIENLEFELSDQSLLLSPEYHNRLEVLK 1064 (1248)
T ss_pred H--------------HHHHHHHHHhcCCccCCcc--HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhCHHHHHHHHHHh
Confidence 3 2344577889999999998 68999999999999999999999999999999999999999999
Q ss_pred hcCCccCCCCccChhhHHHHhhcCCchHHHHHHHHhcccCCCCHHhHHHHHhhhccccccccccCCCCCCCCCcHHHHHH
Q 001047 993 ETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINV 1072 (1174)
Q Consensus 993 ~lgyl~~~~~~vt~~Gr~a~~i~~~~eLllte~l~~g~~~~L~p~~laA~~s~~v~e~~~~r~~~~~~~~~~~~~~l~~~ 1072 (1174)
.+||+|.+. +|++|||+||+|++++|||+|||||++.|.+|+|+|+|||||+||||.. . ..++..++.+.++
T Consensus 1065 ~~g~vD~~~-~V~lkGRvAceI~s~~ELllteli~dn~l~~l~peeiaallSslV~e~~---~----e~~~~~~~~l~k~ 1136 (1248)
T KOG0947|consen 1065 PLGFVDEMR-TVLLKGRVACEINSGNELLLTELIFDNALVDLSPEEIAALLSSLVCEGK---T----ERPPTLTPYLKKG 1136 (1248)
T ss_pred hcCcccccc-eeeecceeeeeecCCcchhHHHHHHhhhhhhcCHHHHHHHHHHHHhcCc---c----ccCCCCChhhhhH
Confidence 999999874 9999999999999999999999999999999999999999999999993 2 2234557899999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCC------CCCChhHHHHHHHHhCCCCHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCC
Q 001047 1073 INVLDEHRSSFLELQEKHGVEIP------CCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 1146 (1174)
Q Consensus 1073 ~~~l~~~~~~l~~~~~~~~~~~~------~~~~~~l~~~v~~Wa~G~~~~~i~~~t~l~eGd~vR~~rrl~dll~Qi~~~ 1146 (1174)
.+.+.+++++|.++|..|++.++ ++++++||++||+||+|.||.+||++|++.||+|||+|+||+|+|||+++|
T Consensus 1137 ~e~v~~v~~rl~ev~~~~~~~~~~~e~f~~~lrF~l~evVYeWA~G~sf~eim~~t~~~EG~iVR~I~RLdE~cre~~~a 1216 (1248)
T KOG0947|consen 1137 KERVRDVAKRLEEVQSSHQLLQTPEEEFPCELRFGLVEVVYEWARGLSFKEIMELTDVLEGLIVRLIQRLDEVCRELRNA 1216 (1248)
T ss_pred HHHHHHHHHHHHHHHHhhccccCchhhccccccccHHHHHHHHHcCCCHHHHHhhhCCcchhHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999664 559999999999999999999999999999999999999999999999999
Q ss_pred CCC--ChHHHHHHHHHHhccCCCCcccCCC
Q 001047 1147 PDV--DQRLQKNAVDASNVMDRPPISELAG 1174 (1174)
Q Consensus 1147 ~~~--~~~l~~~~~~a~~~i~R~~v~~~~~ 1174 (1174)
+.+ ||.|.+||.+|.++|+||||+++++
T Consensus 1217 a~ivGd~~L~~Km~~as~~ikRdIVFaaSL 1246 (1248)
T KOG0947|consen 1217 ARIVGDPVLHEKMEAASALIKRDIVFAASL 1246 (1248)
T ss_pred ceecCcHHHHHHHHHHHHHhccCccchhhc
Confidence 887 9999999999999999999998764
No 3
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.9e-110 Score=1021.21 Aligned_cols=896 Identities=32% Similarity=0.447 Sum_probs=672.1
Q ss_pred hHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCC
Q 001047 149 VDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGD 228 (1174)
Q Consensus 149 ~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~ 228 (1174)
...+...++|.+++||++|+..+.+|.+|+|+||||||||+++.+++..++.+|++++|++|+|||+||+|++|...||+
T Consensus 109 ~~~~~~~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 109 LAPPAREYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred cCcHHHhCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhh
Confidence 45677789999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred --CeEEEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCcc
Q 001047 229 --NNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 306 (1174)
Q Consensus 229 --~~v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~q 306 (1174)
..+|++|||.++|+++.|+|||+|+|++|+|+ +..++..+.+|||||+|+|.|..+|.+||++++++|++++
T Consensus 189 v~~~vGL~TGDv~IN~~A~clvMTTEILRnMlyr------g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~ 262 (1041)
T COG4581 189 VADMVGLMTGDVSINPDAPCLVMTTEILRNMLYR------GSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVR 262 (1041)
T ss_pred hhhhccceecceeeCCCCceEEeeHHHHHHHhcc------CcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCc
Confidence 35799999999999999999999999999998 5678899999999999999999999999999999999999
Q ss_pred EEEEccccCChHHHHHHHhcccC-ceeeecCCCCccccEEeecccccccccccccccccchh---hhhhhhhcccccCCC
Q 001047 307 IICLSATVANADELAGWIGQIHG-KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRK---LSLNYLQLSTSEVKP 382 (1174)
Q Consensus 307 iI~LSATl~n~~~~~~~l~~~~~-~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~l~~~~~~~~~ 382 (1174)
+|+||||+||+.+|+.|++..+. +++++.+++||+||.+|+.....+++++++.+.+.... ........+....+.
T Consensus 263 ~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~ 342 (1041)
T COG4581 263 FVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRET 342 (1041)
T ss_pred EEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhcccc
Confidence 99999999999999999998775 89999999999999999999999999999887532211 111111000000000
Q ss_pred ccC-CCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHh
Q 001047 383 YKD-GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL 461 (1174)
Q Consensus 383 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L 461 (1174)
... .+...+..+. ...+. .......+++..+...+..|+|+|++|++.|+.++..+
T Consensus 343 ~~~~~~~~a~~~~~--~~~~~---------------------~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~ 399 (1041)
T COG4581 343 DDGDVGRYARRTKA--LRGSA---------------------KGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQIL 399 (1041)
T ss_pred Cccccccccccccc--cCCcc---------------------cccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHh
Confidence 000 0000000000 00000 00112245667777788999999999999999999999
Q ss_pred hhcCCCCHHhHHH-HHHHHHHHHhhCCccch------hhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechh
Q 001047 462 EDCNLLDECEMSE-VELALKRFRILYPDAVR------EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 534 (1174)
Q Consensus 462 ~~~~~~~~~e~~~-i~~~~~~~~~~~~~~~~------~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~t 534 (1174)
....+....+++. ++.+++......+...+ ..+...|.+|+++||+||.|..|..|+++|+.|.++|||||.|
T Consensus 400 ~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT 479 (1041)
T COG4581 400 STLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATET 479 (1041)
T ss_pred cccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhh
Confidence 9777777767766 88888776665555443 4677889999999999999999999999999999999999999
Q ss_pred hhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCC-HHHHHHHhhCCCcceeeee
Q 001047 535 LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG-AEECCKLLFAGVEPLVSQF 613 (1174)
Q Consensus 535 la~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~-~~~~~~~~~~~~~pl~S~f 613 (1174)
++.|+|||+.++|+.+.+||+|+...++++.+|+||.|||||+|+|..|++|++..+... +.+...+..+.++||.|+|
T Consensus 480 ~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f 559 (1041)
T COG4581 480 FAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQF 559 (1041)
T ss_pred hhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhhe
Confidence 999999999999999999999999999999999999999999999999999999887766 8999999999999999999
Q ss_pred ccchhHHHHHhhhchhccccCchhHHHHHHhCCCHHHHHHHHHhhHHhhhccchhhHhHHHHHHHHHHHHHHHhhhchhh
Q 001047 614 TASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDA 693 (1174)
Q Consensus 614 ~~~y~~vlnll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sf~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 693 (1174)
+++|||++|+++ ..+ +..++.++++||++|++...+....+.|.++++.+..+...+....
T Consensus 560 ~~sy~milnll~-----------------v~~--l~~~e~ll~~Sf~q~~~~~~l~~~~~~l~~~~~~~~~i~~~~~~~d 620 (1041)
T COG4581 560 RLSYNMILNLLR-----------------VEG--LQTAEDLLERSFAQFQNSRSLPEIVEKLERLEKELNDIATELFGTD 620 (1041)
T ss_pred ecchhHHHhhhh-----------------hcc--cCcHHHHHHhhHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 999999999998 223 3457999999999999999999999999999999988887754321
Q ss_pred hhhHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcceEEEeeecCCCcEeecceEEe
Q 001047 694 IDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYL 773 (1174)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (1174)
.+. . +.-...|.+++.++.+..+..+...+..+..|...++..+..+..|.+ +.+
T Consensus 621 ~~~-~-----~~~~~~~~k~~~~l~~~~~~~a~~~r~~~~gr~~~~~~~~~~~~~g~~-------------------~~~ 675 (1041)
T COG4581 621 END-A-----PKLSLDYEKLRKKLNEEMRLQAAGLRALRKGRVVQIKDGLAALFWGRL-------------------LKL 675 (1041)
T ss_pred ccc-h-----HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcceeeeecchhhhhheee-------------------eee
Confidence 111 0 001556777777777655444433222222222222212111111111 011
Q ss_pred cccCCCchhhhhccc-ccchhhhhhhhccCCCCCCCCCCCCCccccccC----CCCceeeecccceeeEeecCCCCcccc
Q 001047 774 GKFDSLDSSKLKNMA-SINDSFALNRLAQSNGDDYDTQDVKPSYYVALG----SDNTWYTFTEKWIKTVYRIGFPNVALA 848 (1174)
Q Consensus 774 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (1174)
... +. .++.... +....+.. ......|.++++.. .++.|+......+..+.-. ++.....
T Consensus 676 ~~r--~~-~~~t~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 740 (1041)
T COG4581 676 TKR--YT-TKLTDHELYLAVLVEP-----------NADFSFPRPLVKAMPHMNRESRWLVKILFRISFVYLL-NATEILE 740 (1041)
T ss_pred ccc--cc-cccccchheehheecc-----------cCCccchhHHhhcccccccccccccccceeeeeeeec-cccccch
Confidence 000 00 0000000 00000000 00111122222111 3445554444444444322 1211222
Q ss_pred ccCCCChhhhhhhhhhhhHHHHHhhhhhccCcccccCcccccccccC-CCCcccccchhhhhhhccccchhHHhHHHHHH
Q 001047 849 QGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLN-VPVLSSLSESDEVLHMSFEYHDAVENYKEQRT 927 (1174)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1174)
..+..|++.... .+.....+. ..+... ...++ .+.+.++.. |++ +..
T Consensus 741 ~~l~~P~~~~~~--~~~~~~~~~--~~~~~~-----------~~~~~~~~~le~v~~------~~~-----------~~~ 788 (1041)
T COG4581 741 LILTMPRRLLSR--QGKLRRGEP--SNEAIA-----------AGLDGNEKILENVVE------MKI-----------QVP 788 (1041)
T ss_pred hhhcCCHhHhhc--ccchhccch--hHHHHH-----------hccccchhhhhhccc------ccc-----------cch
Confidence 235566544322 100000000 000000 00111 223333321 332 233
Q ss_pred HHHHHHHHHHhccCcch-----hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHhhHHHHHhhcCCccCCCC
Q 001047 928 KVARLKKKIARTEGFKE-----YKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQ 1002 (1174)
Q Consensus 928 ~~~~l~~~l~~~p~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~VL~~lgyl~~~~~ 1002 (1174)
++..+..++..|+.+.. .....+.+++...+...|..+++.+..+| ...++.+++..+.++|+.+||++.+.
T Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~~~~--~~~~~l~~~~~l~~~l~~~g~~~~~~- 865 (1041)
T COG4581 789 ELTVSLLKLRFGRYHLSENPLMNFDGAERLIENELLLSDLQAEIEDLSSSI--EALSFLDDYKTLQEVLKKLGFIEDNA- 865 (1041)
T ss_pred hHHHHHHHHhhcccccCCCccccchHHHHHHHhHhHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHhhcCCCccc-
Confidence 34444455555554331 11335778888999999999999999998 55678899999999999999999875
Q ss_pred ccChhhHHHHhhcCCchHHHHHHHHhcccCCCCHHhHHHHHhhhccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHH
Q 001047 1003 VIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSS 1082 (1174)
Q Consensus 1003 ~vt~~Gr~a~~i~~~~eLllte~l~~g~~~~L~p~~laA~~s~~v~e~~~~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 1082 (1174)
+|+.|||+||+|++++||||||||++|.|++|+|+++||++||||||. ++.+.....+.+++.+++++..+.+++++
T Consensus 866 ~v~~kGr~a~eI~s~~ellL~e~i~~g~f~~l~p~e~aallSa~v~e~---~~~d~~~~~~~~~~~l~~~~~~l~e~~~k 942 (1041)
T COG4581 866 VVLIKGRVAAEISSEDELLLTELIFSGEFNDLEPEELAALLSAFVFEE---KTDDGTAEAPEITPALRDALLRLLELARK 942 (1041)
T ss_pred ccccccceeeeecCCCchHHHHHHHcCCccCCCHHHHHHHHHheeecc---CCcccccccccCCHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 54332124556789999999999999999
Q ss_pred HHHHHHHcCCCCCCC---CChhHHHHHHHHhCCCCHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCCCC--ChHHHHHH
Q 001047 1083 FLELQEKHGVEIPCC---LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNA 1157 (1174)
Q Consensus 1083 l~~~~~~~~~~~~~~---~~~~l~~~v~~Wa~G~~~~~i~~~t~l~eGd~vR~~rrl~dll~Qi~~~~~~--~~~l~~~~ 1157 (1174)
|.+++..|+++++.+ +.++||++||.||+|++|.+||.+|+++|||+||++||++|+|+|+.+++.. |++|.++|
T Consensus 943 l~~~~~~~~i~~~~~l~~~~~~lm~vv~~wa~g~s~~~i~~~~~~~eGs~vR~~~r~~ell~ql~~aa~~ig~~~L~~k~ 1022 (1041)
T COG4581 943 LNKDQNSSQIEIYPELNDFSVGLMEVVYEWARGLSFADICGLTSLLEGSFVRIFRRLRELLRQLRKAASVIGNPELEEKA 1022 (1041)
T ss_pred HHHHHHhcCCcCCcccccccccHHHHHHHHHhhcchhhhhcCCcccccchhhhhhHHHHHHHHhhhcccccCCHHHHHHH
Confidence 999999999999877 7788999999999999999999999999999999999999999999999987 79999999
Q ss_pred HHHHhccCCCCcc
Q 001047 1158 VDASNVMDRPPIS 1170 (1174)
Q Consensus 1158 ~~a~~~i~R~~v~ 1170 (1174)
+.|+..|+|++|+
T Consensus 1023 ~~~~~~irr~iv~ 1035 (1041)
T COG4581 1023 YRAIQEIRRDIVF 1035 (1041)
T ss_pred HHHHHhhhcCeEe
Confidence 9999999999986
No 4
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4.9e-53 Score=534.21 Aligned_cols=442 Identities=26% Similarity=0.381 Sum_probs=341.4
Q ss_pred HHhccCCcCChHHHhhcCCCCCCHHHHHHHHH-HHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHH
Q 001047 139 VKEFGNEMIDVDELASIYDFRIDKFQRSSIEA-FLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217 (1174)
Q Consensus 139 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~-ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q 217 (1174)
+.+++++....+.+++.....|+|+|.+|++. +..|+|++++||||||||++|++|+++.+.++++++|++|+++|+.|
T Consensus 3 ~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q 82 (737)
T PRK02362 3 IAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASE 82 (737)
T ss_pred hhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHH
Confidence 34555666666777776667899999999998 77899999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHhC-CCeEEEEeCCCCCC----CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHH
Q 001047 218 KFREFRETFG-DNNVGLLTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292 (1174)
Q Consensus 218 ~~~~l~~~~g-~~~v~lltGd~~~~----~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~ 292 (1174)
++++|++... +.+++.++|+...+ ..++|+|+|||++..++.+ ...++.++++||+||+|.+.+..||.
T Consensus 83 ~~~~~~~~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~------~~~~l~~v~lvViDE~H~l~d~~rg~ 156 (737)
T PRK02362 83 KFEEFERFEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRN------GAPWLDDITCVVVDEVHLIDSANRGP 156 (737)
T ss_pred HHHHHHHhhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhc------ChhhhhhcCEEEEECccccCCCcchH
Confidence 9999997321 36799999987654 3689999999999988875 24568899999999999999999999
Q ss_pred HHHHHHHHC---CCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhh
Q 001047 293 VWEEIIIYC---PKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLS 369 (1174)
Q Consensus 293 ~~e~ii~~l---~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~ 369 (1174)
.++.++..+ ++++|+|+||||++|++++++|++. ..+...+||+|+...+.....+.. ...
T Consensus 157 ~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~-----~~~~~~~rpv~l~~~v~~~~~~~~---------~~~-- 220 (737)
T PRK02362 157 TLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDA-----ELVDSEWRPIDLREGVFYGGAIHF---------DDS-- 220 (737)
T ss_pred HHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCC-----CcccCCCCCCCCeeeEecCCeecc---------ccc--
Confidence 999886544 5689999999999999999999973 457788999998765432110000 000
Q ss_pred hhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEec
Q 001047 370 LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449 (1174)
Q Consensus 370 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~ 449 (1174)
...+ .. .........+..... ..+++||||+
T Consensus 221 ~~~~----------------------------------------~~--------~~~~~~~~~~~~~~~-~~~~~LVF~~ 251 (737)
T PRK02362 221 QREV----------------------------------------EV--------PSKDDTLNLVLDTLE-EGGQCLVFVS 251 (737)
T ss_pred cccC----------------------------------------CC--------ccchHHHHHHHHHHH-cCCCeEEEEe
Confidence 0000 00 000111222222222 4579999999
Q ss_pred CHHHHHHHHHHhhhcC--CCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCce
Q 001047 450 NRRGCDAAVQYLEDCN--LLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVK 527 (1174)
Q Consensus 450 sr~~~~~la~~L~~~~--~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ik 527 (1174)
|++.|+.++..|.... .....+........+.+....+......+..++..||++|||||++.+|..|++.|++|.++
T Consensus 252 sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~ 331 (737)
T PRK02362 252 SRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIK 331 (737)
T ss_pred CHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCe
Confidence 9999999999987432 23333444444455555433333344567788899999999999999999999999999999
Q ss_pred EEEechhhhhcCCcCCceEEEecccccCCCC-ccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHH-HHhhCC
Q 001047 528 VVFATETLAAGINMPARTAVLSSLSKRTASG-RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC-KLLFAG 605 (1174)
Q Consensus 528 VLVAT~tla~GIDiP~v~vVI~~~~k~~~~~-~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~-~~~~~~ 605 (1174)
|||||+++++|||+|++++||++..+|++.. ..|++..+|+||+|||||.|.|..|.+|+++.+.+...+++ +++...
T Consensus 332 VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~ 411 (737)
T PRK02362 332 VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWAD 411 (737)
T ss_pred EEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCC
Confidence 9999999999999999999999988888653 46899999999999999999999999999998765555554 455678
Q ss_pred CcceeeeeccchhHHHHHhhhchhccccCchhHHHHHHhCCCHHHHHHHHHhhHHhhhc
Q 001047 606 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 664 (1174)
Q Consensus 606 ~~pl~S~f~~~y~~vlnll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sf~~~~~ 664 (1174)
++|++|++...+.+.-++++.... ....+.+++.+++..+|..++.
T Consensus 412 ~~~i~S~l~~~~~l~~~lla~I~~-------------~~~~~~~d~~~~l~~Tf~~~~~ 457 (737)
T PRK02362 412 PEDVRSKLATEPALRTHVLSTIAS-------------GFARTRDGLLEFLEATFYATQT 457 (737)
T ss_pred CCceeecCCChhhHHHHHHHHHHh-------------CccCCHHHHHHHHHhChHHhhc
Confidence 999999998766666666652211 1235678899999999987754
No 5
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.8e-49 Score=496.93 Aligned_cols=426 Identities=28% Similarity=0.399 Sum_probs=326.8
Q ss_pred HhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHH
Q 001047 140 KEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKF 219 (1174)
Q Consensus 140 ~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~ 219 (1174)
.++++.+...+.+.. .+|.++++|.++++.+.+|++++++||||||||+++++++++.+..+.+++|++|+++|++|++
T Consensus 4 ~~~~l~~~~~~~~~~-~~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~ 82 (674)
T PRK01172 4 SDLGYDDEFLNLFTG-NDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKY 82 (674)
T ss_pred hhcCCCHHHHHHHhh-CCCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHH
Confidence 345555555555544 3578999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHhC-CCeEEEEeCCCCCC----CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHH
Q 001047 220 REFRETFG-DNNVGLLTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVW 294 (1174)
Q Consensus 220 ~~l~~~~g-~~~v~lltGd~~~~----~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~ 294 (1174)
++|.+... +..++..+|+.... ..++|+|+|||++..++.+ ....+.++++||+||||++.+..+|..+
T Consensus 83 ~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~------~~~~l~~v~lvViDEaH~l~d~~rg~~l 156 (674)
T PRK01172 83 EELSRLRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHH------DPYIINDVGLIVADEIHIIGDEDRGPTL 156 (674)
T ss_pred HHHHHHhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhC------ChhHHhhcCEEEEecchhccCCCccHHH
Confidence 99987432 35788888986543 3689999999999888765 3345789999999999999999999999
Q ss_pred HHHHHH---CCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhh
Q 001047 295 EEIIIY---CPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 371 (1174)
Q Consensus 295 e~ii~~---l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 371 (1174)
+.++.. .+++.|+|+||||++|++++++|++ +..+...+||+|+...+......+ .+..
T Consensus 157 e~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~-----~~~~~~~~r~vpl~~~i~~~~~~~--~~~~----------- 218 (674)
T PRK01172 157 ETVLSSARYVNPDARILALSATVSNANELAQWLN-----ASLIKSNFRPVPLKLGILYRKRLI--LDGY----------- 218 (674)
T ss_pred HHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhC-----CCccCCCCCCCCeEEEEEecCeee--eccc-----------
Confidence 987653 4678999999999999999999997 345777889999875432211000 0000
Q ss_pred hhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCH
Q 001047 372 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451 (1174)
Q Consensus 372 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr 451 (1174)
.. ....+...+.... .+++++||||+++
T Consensus 219 ------------------------------------------~~---------~~~~~~~~i~~~~-~~~~~vLVF~~sr 246 (674)
T PRK01172 219 ------------------------------------------ER---------SQVDINSLIKETV-NDGGQVLVFVSSR 246 (674)
T ss_pred ------------------------------------------cc---------ccccHHHHHHHHH-hCCCcEEEEeccH
Confidence 00 0001122222222 2457999999999
Q ss_pred HHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEe
Q 001047 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 531 (1174)
Q Consensus 452 ~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVA 531 (1174)
+.|+.++..|........ . + .+...........+..++..||++|||||++.+|..+++.|++|.++||||
T Consensus 247 ~~~~~~a~~L~~~~~~~~----~----~-~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLva 317 (674)
T PRK01172 247 KNAEDYAEMLIQHFPEFN----D----F-KVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVA 317 (674)
T ss_pred HHHHHHHHHHHHhhhhcc----c----c-cccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEe
Confidence 999999998864311000 0 0 000000111223455677889999999999999999999999999999999
Q ss_pred chhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhhCCCcceee
Q 001047 532 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 611 (1174)
Q Consensus 532 T~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~~~~~pl~S 611 (1174)
|+++++|||+|+..|||.+..++++.+..++|+.+|.||+|||||.|.|..|.+++++...++.+.+.+++.+.+.|++|
T Consensus 318 T~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S 397 (674)
T PRK01172 318 TPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVIS 397 (674)
T ss_pred cchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceee
Confidence 99999999999999999988888877788999999999999999999999999998887665566677788899999999
Q ss_pred eeccchhHHHHHhhhchhccccCchhHHHHHHhCCCHHHHHHHHHhhHHhhhc
Q 001047 612 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 664 (1174)
Q Consensus 612 ~f~~~y~~vlnll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sf~~~~~ 664 (1174)
++.....+-.|+|+.... ....+.+++.+++..+|..++.
T Consensus 398 ~l~~~~~~~~~~l~~i~~-------------g~~~~~~d~~~~l~~tf~~~~~ 437 (674)
T PRK01172 398 YMGSQRKVRFNTLAAISM-------------GLASSMEDLILFYNETLMAIQN 437 (674)
T ss_pred cCCCcccHHHHHHHHHHh-------------cccCCHHHHHHHHHhhhhHhcC
Confidence 998665566666552111 1235678899999999997765
No 6
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.9e-49 Score=496.60 Aligned_cols=435 Identities=29% Similarity=0.370 Sum_probs=324.0
Q ss_pred HhccCCcCChHHHhhcCCCCCCHHHHHHHHH-HHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHH
Q 001047 140 KEFGNEMIDVDELASIYDFRIDKFQRSSIEA-FLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQ 217 (1174)
Q Consensus 140 ~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~-ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q 217 (1174)
.+++++....+.+++.+...|+|+|.+|++. +++|+|++++||||||||++|.+|+++.+. .+.++||++|+++|++|
T Consensus 4 ~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q 83 (720)
T PRK00254 4 DELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEE 83 (720)
T ss_pred HHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHH
Confidence 4455566666777777777899999999986 789999999999999999999999998765 57899999999999999
Q ss_pred HHHHHHHHhC-CCeEEEEeCCCCCC----CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHH
Q 001047 218 KFREFRETFG-DNNVGLLTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292 (1174)
Q Consensus 218 ~~~~l~~~~g-~~~v~lltGd~~~~----~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~ 292 (1174)
++++|..+.. +..++.++|+.... .+++|+|+|||++..++.. ...+++++++||+||+|.+.+..+|.
T Consensus 84 ~~~~~~~~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~------~~~~l~~l~lvViDE~H~l~~~~rg~ 157 (720)
T PRK00254 84 KYREFKDWEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRH------GSSWIKDVKLVVADEIHLIGSYDRGA 157 (720)
T ss_pred HHHHHHHHhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhC------CchhhhcCCEEEEcCcCccCCccchH
Confidence 9999986311 36789999987643 3689999999999988764 34568899999999999999999999
Q ss_pred HHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhh
Q 001047 293 VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 372 (1174)
Q Consensus 293 ~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 372 (1174)
.++.++..++...|+|+||||++|++++++|++. ..+...+||+|+...+....... ... + ..
T Consensus 158 ~le~il~~l~~~~qiI~lSATl~n~~~la~wl~~-----~~~~~~~rpv~l~~~~~~~~~~~--~~~-~-----~~---- 220 (720)
T PRK00254 158 TLEMILTHMLGRAQILGLSATVGNAEELAEWLNA-----ELVVSDWRPVKLRKGVFYQGFLF--WED-G-----KI---- 220 (720)
T ss_pred HHHHHHHhcCcCCcEEEEEccCCCHHHHHHHhCC-----ccccCCCCCCcceeeEecCCeee--ccC-c-----ch----
Confidence 9999999998899999999999999999999973 34667889998854322110000 000 0 00
Q ss_pred hhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHH
Q 001047 373 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452 (1174)
Q Consensus 373 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~ 452 (1174)
. .........+..+.. ...++||||+|++
T Consensus 221 -----------------------------------------~---------~~~~~~~~~~~~~i~-~~~~vLVF~~sr~ 249 (720)
T PRK00254 221 -----------------------------------------E---------RFPNSWESLVYDAVK-KGKGALVFVNTRR 249 (720)
T ss_pred -----------------------------------------h---------cchHHHHHHHHHHHH-hCCCEEEEEcChH
Confidence 0 000001112222222 3469999999999
Q ss_pred HHHHHHHHhhhc--CCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEE
Q 001047 453 GCDAAVQYLEDC--NLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVF 530 (1174)
Q Consensus 453 ~~~~la~~L~~~--~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLV 530 (1174)
.|+.++..|... .+....+...+....+.+... .....+..++..||++|||||++.+|..+++.|++|.++|||
T Consensus 250 ~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLv 326 (720)
T PRK00254 250 SAEKEALELAKKIKRFLTKPELRALKELADSLEEN---PTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVIT 326 (720)
T ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC---CCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEE
Confidence 999988877532 122222222233222222111 112356677889999999999999999999999999999999
Q ss_pred echhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhhCCCccee
Q 001047 531 ATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 610 (1174)
Q Consensus 531 AT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~~~~~pl~ 610 (1174)
||+++++|||+|++++||.++.+|++....+++..+|+||+|||||.|.|..|.+++++++.+..+.+.+++.+.++++.
T Consensus 327 aT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~ 406 (720)
T PRK00254 327 ATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLF 406 (720)
T ss_pred eCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhh
Confidence 99999999999999999998888764344567889999999999999999999999998864423335567778888888
Q ss_pred eeeccchhHHHHHhhhchhccccCchhHHHHHHhCCCHHHHHHHHHhhHHhhhc
Q 001047 611 SQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 664 (1174)
Q Consensus 611 S~f~~~y~~vlnll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sf~~~~~ 664 (1174)
|.+.....+.-++++.. + .....+.+++.+++..+|..++.
T Consensus 407 s~l~~es~l~~~ll~~i-~------------~~~~~~~~~~~~~l~~Tf~~~~~ 447 (720)
T PRK00254 407 SMLSNESAFRSQVLALI-T------------NFGVSNFKELVNFLERTFYAHQR 447 (720)
T ss_pred ccCCchHHHHHHHHHHH-H------------hCCCCCHHHHHHHHHhCHHHHhh
Confidence 88765433322333210 0 01246678899999999987654
No 7
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-49 Score=434.35 Aligned_cols=341 Identities=19% Similarity=0.239 Sum_probs=274.9
Q ss_pred HHHHHHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc------CCeEE
Q 001047 133 EKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN------QRRIF 206 (1174)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~------g~rvl 206 (1174)
.....+|....++.+.+..+..+++..|+|+|..+||..+-|+|++.||.||||||.+|.+|+++.+.- -.|||
T Consensus 177 ~~~~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVL 256 (691)
T KOG0338|consen 177 TQMNESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVL 256 (691)
T ss_pred hHHhhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEE
Confidence 334568888999999999999999999999999999999999999999999999999999999998863 23999
Q ss_pred EEcccHHHHHHHHHHHHH--HhCCCeEEEEeCCCCCC-------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEE
Q 001047 207 YTTPLKALSNQKFREFRE--TFGDNNVGLLTGDSAIN-------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277 (1174)
Q Consensus 207 vl~PtraLa~Q~~~~l~~--~~g~~~v~lltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lV 277 (1174)
|++|||+|+.|++...++ .|.++.+|+..|+.++. ..++|+|+|||+|.++|.++. ...++++.++
T Consensus 257 VL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~-----sf~ldsiEVL 331 (691)
T KOG0338|consen 257 VLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSP-----SFNLDSIEVL 331 (691)
T ss_pred EEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCC-----CccccceeEE
Confidence 999999999999988876 36778999999998754 589999999999999999864 5578999999
Q ss_pred EEccccccccCCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhc-ccCceeeecCCCCccccEEeeccccccccc
Q 001047 278 VLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ-IHGKTELITSSRRPVPLTWYFSTKTALLPL 356 (1174)
Q Consensus 278 IiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~-~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~ 356 (1174)
|+|||++|++.+|...+.+|+..||++.|.++||||++ +++.+.... +..++.++..+..
T Consensus 332 vlDEADRMLeegFademnEii~lcpk~RQTmLFSATMt--eeVkdL~slSL~kPvrifvd~~~----------------- 392 (691)
T KOG0338|consen 332 VLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMT--EEVKDLASLSLNKPVRIFVDPNK----------------- 392 (691)
T ss_pred EechHHHHHHHHHHHHHHHHHHhccccccceeehhhhH--HHHHHHHHhhcCCCeEEEeCCcc-----------------
Confidence 99999999999999999999999999999999999997 333333322 1223333322211
Q ss_pred ccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchh-HHHHHHH
Q 001047 357 LDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQ-VIDTLWH 435 (1174)
Q Consensus 357 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~ 435 (1174)
.....+.+.|+...+... ...+. +..++..
T Consensus 393 ------~~a~~LtQEFiRIR~~re-------------------------------------------~dRea~l~~l~~r 423 (691)
T KOG0338|consen 393 ------DTAPKLTQEFIRIRPKRE-------------------------------------------GDREAMLASLITR 423 (691)
T ss_pred ------ccchhhhHHHheeccccc-------------------------------------------cccHHHHHHHHHH
Confidence 122333344442110000 00111 1222222
Q ss_pred HHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHH
Q 001047 436 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKS 515 (1174)
Q Consensus 436 l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~ 515 (1174)
+ -...+|||+.+++.|.++.-.|-- |...++-+||.|++.+|.
T Consensus 424 t---f~~~~ivFv~tKk~AHRl~IllGL----------------------------------lgl~agElHGsLtQ~QRl 466 (691)
T KOG0338|consen 424 T---FQDRTIVFVRTKKQAHRLRILLGL----------------------------------LGLKAGELHGSLTQEQRL 466 (691)
T ss_pred h---cccceEEEEehHHHHHHHHHHHHH----------------------------------hhchhhhhcccccHHHHH
Confidence 2 235799999999999887655543 334788899999999999
Q ss_pred HHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 516 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 516 ~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
..++.|++++++|||||+++++|+||+.+.+||| |..|.+...|+||+||+.|+| ..|.+|.+++..+
T Consensus 467 esL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN--------y~mP~t~e~Y~HRVGRTARAG--RaGrsVtlvgE~d 534 (691)
T KOG0338|consen 467 ESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN--------YAMPKTIEHYLHRVGRTARAG--RAGRSVTLVGESD 534 (691)
T ss_pred HHHHHHHhccCCEEEEechhhccCCccceeEEEe--------ccCchhHHHHHHHhhhhhhcc--cCcceEEEecccc
Confidence 9999999999999999999999999999999999 999999999999999999999 8999999998764
No 8
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.1e-48 Score=482.38 Aligned_cols=422 Identities=30% Similarity=0.452 Sum_probs=310.5
Q ss_pred CCCHHHHHHHHH-HHcCCcEEEEccCCcchHHHHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHH--HHhCCCeEEEE
Q 001047 159 RIDKFQRSSIEA-FLRGSSVVVSAPTSSGKTLIAEAAAVATVAN-QRRIFYTTPLKALSNQKFREFR--ETFGDNNVGLL 234 (1174)
Q Consensus 159 ~~~~~Q~~ai~~-ll~g~~vlv~apTGsGKTlv~~~~il~~l~~-g~rvlvl~PtraLa~Q~~~~l~--~~~g~~~v~ll 234 (1174)
++.+.|+.++.. +..++|+||++|||||||++++++|+..+.+ +.+++|++|+|+|++|++++|+ +.|| .+|+..
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~G-irV~~~ 109 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELG-IRVGIS 109 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcC-CEEEEe
Confidence 566677777766 4556999999999999999999999999987 5899999999999999999999 4566 689999
Q ss_pred eCCCCCC----CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCC---CCccE
Q 001047 235 TGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP---KEVQI 307 (1174)
Q Consensus 235 tGd~~~~----~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~---~~~qi 307 (1174)
|||.... .+++|+|+|||.+-..+.+. ..++..+++|||||+|.+.|..||++++.++.... ..+|+
T Consensus 110 TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~------~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~ri 183 (766)
T COG1204 110 TGDYDLDDERLARYDVIVTTPEKLDSLTRKR------PSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRI 183 (766)
T ss_pred cCCcccchhhhccCCEEEEchHHhhHhhhcC------cchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEE
Confidence 9999855 47999999999999888763 44788999999999999999889999999987653 34899
Q ss_pred EEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCC
Q 001047 308 ICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387 (1174)
Q Consensus 308 I~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 387 (1174)
++||||+||..++++|++. ..+.+.+||+|+..-+.....++. ..+.
T Consensus 184 vgLSATlpN~~evA~wL~a-----~~~~~~~rp~~l~~~v~~~~~~~~---~~~~------------------------- 230 (766)
T COG1204 184 VGLSATLPNAEEVADWLNA-----KLVESDWRPVPLRRGVPYVGAFLG---ADGK------------------------- 230 (766)
T ss_pred EEEeeecCCHHHHHHHhCC-----cccccCCCCcccccCCccceEEEE---ecCc-------------------------
Confidence 9999999999999999984 444677777776432211110000 0000
Q ss_pred ccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhh--cC
Q 001047 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED--CN 465 (1174)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~--~~ 465 (1174)
.+ . . ...........+.... ..++++||||+||+.+...|..+.+ .+
T Consensus 231 -~k----~------------------~-------~~~~~~~~~~~v~~~~-~~~~qvLvFv~sR~~a~~~A~~l~~~~~~ 279 (766)
T COG1204 231 -KK----T------------------W-------PLLIDNLALELVLESL-AEGGQVLVFVHSRKEAEKTAKKLRIKMSA 279 (766)
T ss_pred -cc----c------------------c-------cccchHHHHHHHHHHH-hcCCeEEEEEecCchHHHHHHHHHHHHhh
Confidence 00 0 0 0000111222222222 3567999999999999999999884 33
Q ss_pred CCCHHhHHHHHHHHHHHHh-hCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCc
Q 001047 466 LLDECEMSEVELALKRFRI-LYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 544 (1174)
Q Consensus 466 ~~~~~e~~~i~~~~~~~~~-~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v 544 (1174)
..+..+..........+.. ..+......+.+++..|+++||+||+..+|..+++.|+.|.++||+||+|+++|||.|+.
T Consensus 280 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~ 359 (766)
T COG1204 280 TLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPAR 359 (766)
T ss_pred cCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcce
Confidence 3344333332222222222 222233357788999999999999999999999999999999999999999999999999
Q ss_pred eEEEecccccC-CCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHH-HHhhCCCcceeeeeccchhHHHH
Q 001047 545 TAVLSSLSKRT-ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC-KLLFAGVEPLVSQFTASYGMVLN 622 (1174)
Q Consensus 545 ~vVI~~~~k~~-~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~-~~~~~~~~pl~S~f~~~y~~vln 622 (1174)
+|||.+..+|+ ..+..++++.+|+||.|||||.|.|..|.++++.+..++...+. .+....++|+.|.+...-+.--.
T Consensus 360 ~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~ 439 (766)
T COG1204 360 TVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTF 439 (766)
T ss_pred EEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchhe
Confidence 99999988888 33468899999999999999999999999999996655555443 45666677766666544322112
Q ss_pred HhhhchhccccCchhHHHHHHhCCCHHHHHHHHHhhHHhhhc
Q 001047 623 LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVG 664 (1174)
Q Consensus 623 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sf~~~~~ 664 (1174)
++. +.... ...+..+..+++.+.|.+.+.
T Consensus 440 l~~------v~~~~-------~~v~~~~~~~f~~~t~~~~~~ 468 (766)
T COG1204 440 LLG------VISVG-------DAVSWLELTDFYERTFYNPQT 468 (766)
T ss_pred EEE------EEecc-------chhhHHHHHHHHHHHHhhhhh
Confidence 211 11111 123445677888888888774
No 9
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.1e-47 Score=435.11 Aligned_cols=338 Identities=21% Similarity=0.219 Sum_probs=270.4
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc---------CCeEEEE
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN---------QRRIFYT 208 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~---------g~rvlvl 208 (1174)
.|.+++++......++....-.|+|+|.+.||.++.|+|++..|.||||||++|++|++.++.. ++++||+
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 7788888888888888888889999999999999999999999999999999999999998875 6699999
Q ss_pred cccHHHHHHHHHHHHHHhCCC--eEEEEeCCCCC-------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEE
Q 001047 209 TPLKALSNQKFREFRETFGDN--NVGLLTGDSAI-------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVL 279 (1174)
Q Consensus 209 ~PtraLa~Q~~~~l~~~~g~~--~v~lltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIi 279 (1174)
+|||+||+|+.+++.++.... ...+++|+.+. ..+.+|+|+||++|.+++.. +...|.++.++|+
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~------g~~~l~~v~ylVL 245 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE------GSLNLSRVTYLVL 245 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc------CCccccceeEEEe
Confidence 999999999999999965443 35667777654 35799999999999999997 5778999999999
Q ss_pred ccccccccCCcHHHHHHHHHHC-CCCccEEEEccccCC-hHHHHHHHhcccCceeeecCCCCccccEEeecccccccccc
Q 001047 280 DEVHYLSDISRGTVWEEIIIYC-PKEVQIICLSATVAN-ADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL 357 (1174)
Q Consensus 280 DEaH~l~d~~~g~~~e~ii~~l-~~~~qiI~LSATl~n-~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~ 357 (1174)
||||+|+|++|.+.++.|+..+ ++..|++++|||.|. ...++.-+-. . |++..+....
T Consensus 246 DEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~--~------------~~~i~ig~~~------ 305 (519)
T KOG0331|consen 246 DEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLN--N------------PIQINVGNKK------ 305 (519)
T ss_pred ccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhc--C------------ceEEEecchh------
Confidence 9999999999999999999999 556689999999984 4555543321 1 1121111100
Q ss_pred cccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHH
Q 001047 358 DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437 (1174)
Q Consensus 358 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 437 (1174)
....+..+.+ ++ .. .. .......+..+|....
T Consensus 306 ---~~~a~~~i~q-iv-----------e~--------------------------~~-------~~~K~~~l~~lL~~~~ 337 (519)
T KOG0331|consen 306 ---ELKANHNIRQ-IV-----------EV--------------------------CD-------ETAKLRKLGKLLEDIS 337 (519)
T ss_pred ---hhhhhcchhh-hh-----------hh--------------------------cC-------HHHHHHHHHHHHHHHh
Confidence 0000000000 00 00 00 0001122344455554
Q ss_pred hCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHH
Q 001047 438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 517 (1174)
Q Consensus 438 ~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v 517 (1174)
....+++||||.+++.|+.++..+...++ ++..+||+.++.+|+.+
T Consensus 338 ~~~~~KvIIFc~tkr~~~~l~~~l~~~~~----------------------------------~a~~iHGd~sQ~eR~~~ 383 (519)
T KOG0331|consen 338 SDSEGKVIIFCETKRTCDELARNLRRKGW----------------------------------PAVAIHGDKSQSERDWV 383 (519)
T ss_pred ccCCCcEEEEecchhhHHHHHHHHHhcCc----------------------------------ceeeecccccHHHHHHH
Confidence 45667999999999999999999986554 68889999999999999
Q ss_pred HHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 518 EELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 518 ~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
++.|++|...|||||+++++|||+|+|++||+ |++|.++.+|+||+||+||+| ..|.++.|.+..+
T Consensus 384 L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn--------ydfP~~vEdYVHRiGRTGRa~--~~G~A~tfft~~~ 449 (519)
T KOG0331|consen 384 LKGFREGKSPVLVATDVAARGLDVPDVDLVIN--------YDFPNNVEDYVHRIGRTGRAG--KKGTAITFFTSDN 449 (519)
T ss_pred HHhcccCCcceEEEcccccccCCCccccEEEe--------CCCCCCHHHHHhhcCccccCC--CCceEEEEEeHHH
Confidence 99999999999999999999999999999999 999999999999999999998 8999998887643
No 10
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-47 Score=409.69 Aligned_cols=334 Identities=20% Similarity=0.234 Sum_probs=270.5
Q ss_pred HHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcC---CeEEEEcccHH
Q 001047 137 NEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ---RRIFYTTPLKA 213 (1174)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g---~rvlvl~Ptra 213 (1174)
.+|.+++..+...+..+......|+++|.++||.++.|+++|+.|.||||||.+|.+||++.+.+. .+++|++|||+
T Consensus 61 ~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRE 140 (476)
T KOG0330|consen 61 KSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRE 140 (476)
T ss_pred cchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHH
Confidence 466777777778888888887789999999999999999999999999999999999999998754 48999999999
Q ss_pred HHHHHHHHHHHHhCC--CeEEEEeCCCC-------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc
Q 001047 214 LSNQKFREFRETFGD--NNVGLLTGDSA-------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 214 La~Q~~~~l~~~~g~--~~v~lltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~ 284 (1174)
||.|+.+.|..+-.. ..+..+.|+.. ..+.++|+|+|||+|.+++.++. ...+..++++|+||||+
T Consensus 141 LA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tk-----gf~le~lk~LVlDEADr 215 (476)
T KOG0330|consen 141 LAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTK-----GFSLEQLKFLVLDEADR 215 (476)
T ss_pred HHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhcc-----CccHHHhHHHhhchHHh
Confidence 999999999985332 46777888764 34689999999999999999764 34688999999999999
Q ss_pred cccCCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHHHHhcccCceeeecC-CCCccccEEeeccccccccccccccc
Q 001047 285 LSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTELITS-SRRPVPLTWYFSTKTALLPLLDEKGK 362 (1174)
Q Consensus 285 l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~~l~~~~~~~~~i~~-~~rpvpl~~~~~~~~~~~~~~~~~~~ 362 (1174)
++|++|+..+..|+..+|...|++++|||++. ...+. -...+.+..+..+ .++.+|
T Consensus 216 lLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~--rasl~~p~~v~~s~ky~tv~-------------------- 273 (476)
T KOG0330|consen 216 LLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQ--RASLDNPVKVAVSSKYQTVD-------------------- 273 (476)
T ss_pred hhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHH--hhccCCCeEEeccchhcchH--------------------
Confidence 99999999999999999999999999999983 34443 1112222222221 222222
Q ss_pred ccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCC
Q 001047 363 HMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442 (1174)
Q Consensus 363 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 442 (1174)
.+.+.|+...... .. ..++..+.+..+.
T Consensus 274 ----~lkQ~ylfv~~k~---------------------------------------------K~---~yLV~ll~e~~g~ 301 (476)
T KOG0330|consen 274 ----HLKQTYLFVPGKD---------------------------------------------KD---TYLVYLLNELAGN 301 (476)
T ss_pred ----HhhhheEeccccc---------------------------------------------cc---hhHHHHHHhhcCC
Confidence 1212222110000 00 1122223344557
Q ss_pred CeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHh
Q 001047 443 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQ 522 (1174)
Q Consensus 443 ~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~ 522 (1174)
++||||++...+..++-.|+..|+ ....+||.|++..|.-.++.|+
T Consensus 302 s~iVF~~t~~tt~~la~~L~~lg~----------------------------------~a~~LhGqmsq~~Rlg~l~~Fk 347 (476)
T KOG0330|consen 302 SVIVFCNTCNTTRFLALLLRNLGF----------------------------------QAIPLHGQMSQSKRLGALNKFK 347 (476)
T ss_pred cEEEEEeccchHHHHHHHHHhcCc----------------------------------ceecccchhhHHHHHHHHHHHh
Confidence 999999999999999999988887 5677999999999999999999
Q ss_pred cCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 523 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 523 ~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
+|...||+|||++++|+|+|.+++||| ||.|.+..+|+||+||+||+| ..|.+|.+++.++
T Consensus 348 ~~~r~iLv~TDVaSRGLDip~Vd~VVN--------yDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyD 408 (476)
T KOG0330|consen 348 AGARSILVCTDVASRGLDIPHVDVVVN--------YDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYD 408 (476)
T ss_pred ccCCcEEEecchhcccCCCCCceEEEe--------cCCCCcHHHHHHHcccccccC--CCcceEEEEehhh
Confidence 999999999999999999999999999 999999999999999999999 8999999988854
No 11
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.8e-47 Score=451.58 Aligned_cols=408 Identities=25% Similarity=0.397 Sum_probs=316.6
Q ss_pred hcCCCC-CCHHHHHHHHHHHcC-CcEEEEccCCcchHHHHHHHHHHHHh----------cCCeEEEEcccHHHHHHHHHH
Q 001047 154 SIYDFR-IDKFQRSSIEAFLRG-SSVVVSAPTSSGKTLIAEAAAVATVA----------NQRRIFYTTPLKALSNQKFRE 221 (1174)
Q Consensus 154 ~~~~~~-~~~~Q~~ai~~ll~g-~~vlv~apTGsGKTlv~~~~il~~l~----------~g~rvlvl~PtraLa~Q~~~~ 221 (1174)
..|+|+ ++.+|..++|.+.+. .|+|||||||||||.+|++.|++.+. ++-+++||+|+||||.++++.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 444443 888999999988754 79999999999999999999999997 345999999999999999999
Q ss_pred HHHHhC--CCeEEEEeCCCCCCC----CCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHH
Q 001047 222 FRETFG--DNNVGLLTGDSAINR----EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWE 295 (1174)
Q Consensus 222 l~~~~g--~~~v~lltGd~~~~~----~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e 295 (1174)
|.+.|+ ++.|.-+|||....+ +++|+|+|||.+--.-.+..+ ....+..|++|||||+|.+-| .||+++|
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~---d~~l~~~V~LviIDEVHlLhd-~RGpvlE 259 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVG---DSALFSLVRLVIIDEVHLLHD-DRGPVLE 259 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeecc---chhhhhheeeEEeeeehhhcC-cccchHH
Confidence 999998 778999999997653 799999999987543333221 234567899999999999987 8999999
Q ss_pred HHHHHC-------CCCccEEEEccccCChHHHHHHHhccc-CceeeecCCCCccccEEeecccccccccccccccccchh
Q 001047 296 EIIIYC-------PKEVQIICLSATVANADELAGWIGQIH-GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRK 367 (1174)
Q Consensus 296 ~ii~~l-------~~~~qiI~LSATl~n~~~~~~~l~~~~-~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~ 367 (1174)
.++.+. ...+++|+||||+||.++++.||+... .....+...+||+|+.+.+.+...- +..
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~-----------~~~ 328 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGK-----------KNR 328 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecc-----------cch
Confidence 987654 347899999999999999999999752 3578889999999999887653210 000
Q ss_pred hhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEE
Q 001047 368 LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447 (1174)
Q Consensus 368 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF 447 (1174)
. ....+.. ...+.+.... ..+.+++||
T Consensus 329 ~---------------------------------------------~~~~~d~-------~~~~kv~e~~-~~g~qVlvF 355 (1230)
T KOG0952|consen 329 Q---------------------------------------------QKKNIDE-------VCYDKVVEFL-QEGHQVLVF 355 (1230)
T ss_pred h---------------------------------------------hhhhHHH-------HHHHHHHHHH-HcCCeEEEE
Confidence 0 0000000 1111122222 245799999
Q ss_pred ecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCce
Q 001047 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVK 527 (1174)
Q Consensus 448 ~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ik 527 (1174)
|.+|+...+.|+.|.+....... .....+....+.+.+++.+|+++||+||+..+|..++..|..|.++
T Consensus 356 vhsR~~Ti~tA~~l~~~a~~~g~-----------~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~ 424 (1230)
T KOG0952|consen 356 VHSRNETIRTAKKLRERAETNGE-----------KDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIK 424 (1230)
T ss_pred EecChHHHHHHHHHHHHHHhcCc-----------ccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCce
Confidence 99999999999988743211000 0001111122345567788999999999999999999999999999
Q ss_pred EEEechhhhhcCCcCCceEEEecccccCCCC--ccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhhCC
Q 001047 528 VVFATETLAAGINMPARTAVLSSLSKRTASG--RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 605 (1174)
Q Consensus 528 VLVAT~tla~GIDiP~v~vVI~~~~k~~~~~--~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~~~ 605 (1174)
||+||.|+++|+|+|+-.|||-++.-|+... ...++..+.+|+.|||||.++|..|.++++.+.. .-..|.-+...
T Consensus 425 vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d--kl~~Y~sLl~~ 502 (1230)
T KOG0952|consen 425 VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD--KLDHYESLLTG 502 (1230)
T ss_pred EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc--HHHHHHHHHcC
Confidence 9999999999999999999999988887654 5678899999999999999999999999998773 34567777788
Q ss_pred CcceeeeeccchhHHHHHhhhchhccccCchhHHHHHHh
Q 001047 606 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQA 644 (1174)
Q Consensus 606 ~~pl~S~f~~~y~~vlnll~~~~~~~~~~~~~~~~~~~~ 644 (1174)
..|++|+|.+.. +-||=+...+..+.+.+++|+|+.+
T Consensus 503 ~~piES~~~~~L--~dnLnAEi~LgTVt~VdeAVeWL~y 539 (1230)
T KOG0952|consen 503 QNPIESQLLPCL--IDNLNAEISLGTVTNVDEAVEWLKY 539 (1230)
T ss_pred CChhHHHHHHHH--HHhhhhheeeceeecHHHHHHHhhc
Confidence 999999998764 4455456667788888889888643
No 12
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.5e-44 Score=433.83 Aligned_cols=330 Identities=19% Similarity=0.183 Sum_probs=260.5
Q ss_pred HHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcC---------CeEEEEc
Q 001047 139 VKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ---------RRIFYTT 209 (1174)
Q Consensus 139 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g---------~rvlvl~ 209 (1174)
|..+++.+.....+.+.....|+|+|.++|+.+++|+|+|++||||||||++|++|+++.+... .++||++
T Consensus 3 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~ 82 (456)
T PRK10590 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILT 82 (456)
T ss_pred HHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEe
Confidence 5667777788888888888899999999999999999999999999999999999999887532 3799999
Q ss_pred ccHHHHHHHHHHHHHHhCC--CeEEEEeCCCCCC-------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEc
Q 001047 210 PLKALSNQKFREFRETFGD--NNVGLLTGDSAIN-------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLD 280 (1174)
Q Consensus 210 PtraLa~Q~~~~l~~~~g~--~~v~lltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiD 280 (1174)
||++|+.|+++.+..++.. ..+..++|+...+ ..++|+|+||++|.+++.. ....+.++++||||
T Consensus 83 PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~------~~~~l~~v~~lViD 156 (456)
T PRK10590 83 PTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ------NAVKLDQVEILVLD 156 (456)
T ss_pred CcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc------CCcccccceEEEee
Confidence 9999999999999986543 4566677776543 4689999999999998875 34568899999999
Q ss_pred cccccccCCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccc
Q 001047 281 EVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDE 359 (1174)
Q Consensus 281 EaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~ 359 (1174)
|||+|.++++...+..++..++...|+++||||+++ ...+..++........+.........+.+++..
T Consensus 157 Eah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~---------- 226 (456)
T PRK10590 157 EADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHF---------- 226 (456)
T ss_pred cHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEE----------
Confidence 999999999999999999999999999999999986 355555543211101110000000001100000
Q ss_pred cccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHH-h
Q 001047 360 KGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR-S 438 (1174)
Q Consensus 360 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~-~ 438 (1174)
. . ......++..+. .
T Consensus 227 ----~-------------------------------------------------~-----------~~~k~~~l~~l~~~ 242 (456)
T PRK10590 227 ----V-------------------------------------------------D-----------KKRKRELLSQMIGK 242 (456)
T ss_pred ----c-------------------------------------------------C-----------HHHHHHHHHHHHHc
Confidence 0 0 000112223332 2
Q ss_pred CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHH
Q 001047 439 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 518 (1174)
Q Consensus 439 ~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~ 518 (1174)
....++||||+++..|+.++..|...++ .+..+||+|++.+|..++
T Consensus 243 ~~~~~~lVF~~t~~~~~~l~~~L~~~g~----------------------------------~~~~lhg~~~~~~R~~~l 288 (456)
T PRK10590 243 GNWQQVLVFTRTKHGANHLAEQLNKDGI----------------------------------RSAAIHGNKSQGARTRAL 288 (456)
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHCCC----------------------------------CEEEEECCCCHHHHHHHH
Confidence 3456899999999999999999976554 578899999999999999
Q ss_pred HHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 519 ~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
+.|++|.++|||||+++++|||+|++++||+ ++.|.++.+|+||+|||||.| ..|.++++++..
T Consensus 289 ~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~--------~~~P~~~~~yvqR~GRaGR~g--~~G~ai~l~~~~ 352 (456)
T PRK10590 289 ADFKSGDIRVLVATDIAARGLDIEELPHVVN--------YELPNVPEDYVHRIGRTGRAA--ATGEALSLVCVD 352 (456)
T ss_pred HHHHcCCCcEEEEccHHhcCCCcccCCEEEE--------eCCCCCHHHhhhhccccccCC--CCeeEEEEecHH
Confidence 9999999999999999999999999999999 899999999999999999999 789999888654
No 13
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-44 Score=434.77 Aligned_cols=335 Identities=21% Similarity=0.263 Sum_probs=271.1
Q ss_pred HHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc--CC--e-EEEEccc
Q 001047 137 NEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN--QR--R-IFYTTPL 211 (1174)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~--g~--r-vlvl~Pt 211 (1174)
..|.+++++...+..+.+.+...|+|+|.++||.++.|+|+++.|+||||||++|.+|+++.+.. .. . +||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 35667778888888888888888999999999999999999999999999999999999999873 22 2 8999999
Q ss_pred HHHHHHHHHHHHHHhC---CCeEEEEeCCCCCC-------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcc
Q 001047 212 KALSNQKFREFRETFG---DNNVGLLTGDSAIN-------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDE 281 (1174)
Q Consensus 212 raLa~Q~~~~l~~~~g---~~~v~lltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDE 281 (1174)
|+||.|+++.+..+.. ...+..+.|+.+.. .+++|+|+||++|.+++.+ ....+.++.++|+||
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~------~~l~l~~v~~lVlDE 182 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR------GKLDLSGVETLVLDE 182 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc------CCcchhhcCEEEecc
Confidence 9999999999988543 45678888887643 3699999999999999987 456788999999999
Q ss_pred ccccccCCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCC--C---CccccEEeeccccccccc
Q 001047 282 VHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSS--R---RPVPLTWYFSTKTALLPL 356 (1174)
Q Consensus 282 aH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~--~---rpvpl~~~~~~~~~~~~~ 356 (1174)
||+|+|++|...++.++..+|.+.|+++||||++. .+..|..........+... . -...+.+++...
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~--~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v------ 254 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPD--DIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEV------ 254 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH--HHHHHHHHHccCCcEEEEccccccccccCceEEEEEe------
Confidence 99999999999999999999999999999999986 3555554432211111100 0 000111111000
Q ss_pred ccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHH
Q 001047 357 LDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL 436 (1174)
Q Consensus 357 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l 436 (1174)
.........+..+
T Consensus 255 -------------------------------------------------------------------~~~~~k~~~L~~l 267 (513)
T COG0513 255 -------------------------------------------------------------------ESEEEKLELLLKL 267 (513)
T ss_pred -------------------------------------------------------------------CCHHHHHHHHHHH
Confidence 0000133444444
Q ss_pred HhC-CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHH
Q 001047 437 RSR-DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKS 515 (1174)
Q Consensus 437 ~~~-~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~ 515 (1174)
... ...++||||++++.|+.++..|...|+ .+..+||+|++.+|.
T Consensus 268 l~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~----------------------------------~~~~lhG~l~q~~R~ 313 (513)
T COG0513 268 LKDEDEGRVIVFVRTKRLVEELAESLRKRGF----------------------------------KVAALHGDLPQEERD 313 (513)
T ss_pred HhcCCCCeEEEEeCcHHHHHHHHHHHHHCCC----------------------------------eEEEecCCCCHHHHH
Confidence 443 444699999999999999999987776 689999999999999
Q ss_pred HHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCH
Q 001047 516 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 595 (1174)
Q Consensus 516 ~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~ 595 (1174)
.+++.|++|.++||||||++++|||+|++++||+ |+.|.++..|+||+||+||+| ..|.++.|+++.++.
T Consensus 314 ~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin--------yD~p~~~e~yvHRiGRTgRaG--~~G~ai~fv~~~~e~ 383 (513)
T COG0513 314 RALEKFKDGELRVLVATDVAARGLDIPDVSHVIN--------YDLPLDPEDYVHRIGRTGRAG--RKGVAISFVTEEEEV 383 (513)
T ss_pred HHHHHHHcCCCCEEEEechhhccCCccccceeEE--------ccCCCCHHHheeccCccccCC--CCCeEEEEeCcHHHH
Confidence 9999999999999999999999999999999999 999999999999999999999 899999999874333
Q ss_pred H
Q 001047 596 E 596 (1174)
Q Consensus 596 ~ 596 (1174)
.
T Consensus 384 ~ 384 (513)
T COG0513 384 K 384 (513)
T ss_pred H
Confidence 3
No 14
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.6e-44 Score=435.39 Aligned_cols=330 Identities=20% Similarity=0.237 Sum_probs=263.4
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcC---CeEEEEcccHHH
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ---RRIFYTTPLKAL 214 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g---~rvlvl~PtraL 214 (1174)
+|..+++.+.....+.......|+|+|.+|++.+++|+|++++||||||||++|.+|+++.+..+ .+++|++||++|
T Consensus 5 ~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreL 84 (460)
T PRK11776 5 AFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTREL 84 (460)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHH
Confidence 46677777777788888877789999999999999999999999999999999999999988643 379999999999
Q ss_pred HHHHHHHHHHHh---CCCeEEEEeCCCCC-------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc
Q 001047 215 SNQKFREFRETF---GDNNVGLLTGDSAI-------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 215 a~Q~~~~l~~~~---g~~~v~lltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~ 284 (1174)
+.|++++++... .+..+..++|+.+. ..+++|+|+||++|.+++.+ ....+.++++||+||||+
T Consensus 85 a~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~------~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 85 ADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK------GTLDLDALNTLVLDEADR 158 (460)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc------CCccHHHCCEEEEECHHH
Confidence 999999988753 35678888888754 35789999999999999876 345688999999999999
Q ss_pred cccCCcHHHHHHHHHHCCCCccEEEEccccCCh-HHHHHHHhcccCceeee-cCCCCccccEEeeccccccccccccccc
Q 001047 285 LSDISRGTVWEEIIIYCPKEVQIICLSATVANA-DELAGWIGQIHGKTELI-TSSRRPVPLTWYFSTKTALLPLLDEKGK 362 (1174)
Q Consensus 285 l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~-~~~~~~l~~~~~~~~~i-~~~~rpvpl~~~~~~~~~~~~~~~~~~~ 362 (1174)
|.+.+|...+..++..++...|+++||||+++. ..+...+.. .+..+. ........+.+++...
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~--~~~~i~~~~~~~~~~i~~~~~~~------------ 224 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQR--DPVEVKVESTHDLPAIEQRFYEV------------ 224 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcC--CCEEEEECcCCCCCCeeEEEEEe------------
Confidence 999999999999999999999999999999742 333333221 111111 1111111111111000
Q ss_pred ccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHH-HHhCCC
Q 001047 363 HMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH-LRSRDM 441 (1174)
Q Consensus 363 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~-l~~~~~ 441 (1174)
. .......+.. +.....
T Consensus 225 ---------------------------------------------------~-----------~~~k~~~l~~ll~~~~~ 242 (460)
T PRK11776 225 ---------------------------------------------------S-----------PDERLPALQRLLLHHQP 242 (460)
T ss_pred ---------------------------------------------------C-----------cHHHHHHHHHHHHhcCC
Confidence 0 0001112222 223345
Q ss_pred CCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHH
Q 001047 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 521 (1174)
Q Consensus 442 ~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F 521 (1174)
.++||||++++.|+.+++.|...++ .+..+||+|++.+|+.+++.|
T Consensus 243 ~~~lVF~~t~~~~~~l~~~L~~~~~----------------------------------~v~~~hg~~~~~eR~~~l~~F 288 (460)
T PRK11776 243 ESCVVFCNTKKECQEVADALNAQGF----------------------------------SALALHGDLEQRDRDQVLVRF 288 (460)
T ss_pred CceEEEECCHHHHHHHHHHHHhCCC----------------------------------cEEEEeCCCCHHHHHHHHHHH
Confidence 6899999999999999999986664 689999999999999999999
Q ss_pred hcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 522 QRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 522 ~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
++|.++|||||+++++|||+|++++||+ ++.|.++.+|+||+|||||.| ..|.+++++++.+
T Consensus 289 ~~g~~~vLVaTdv~~rGiDi~~v~~VI~--------~d~p~~~~~yiqR~GRtGR~g--~~G~ai~l~~~~e 350 (460)
T PRK11776 289 ANRSCSVLVATDVAARGLDIKALEAVIN--------YELARDPEVHVHRIGRTGRAG--SKGLALSLVAPEE 350 (460)
T ss_pred HcCCCcEEEEecccccccchhcCCeEEE--------ecCCCCHhHhhhhcccccCCC--CcceEEEEEchhH
Confidence 9999999999999999999999999999 899999999999999999999 7899999987753
No 15
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=7.8e-44 Score=432.64 Aligned_cols=333 Identities=22% Similarity=0.229 Sum_probs=253.9
Q ss_pred HHHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh----------cCCeE
Q 001047 136 CNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA----------NQRRI 205 (1174)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~----------~g~rv 205 (1174)
...|..+++.+.....+.......|+|+|.+||+.++.|+|++++||||||||++|++|++..+. .+.++
T Consensus 120 i~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~a 199 (518)
T PLN00206 120 ILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLA 199 (518)
T ss_pred hcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceE
Confidence 34566667777777788777777899999999999999999999999999999999999987753 35689
Q ss_pred EEEcccHHHHHHHHHHHHHHhCC--CeEEEEeCCCC-------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeE
Q 001047 206 FYTTPLKALSNQKFREFRETFGD--NNVGLLTGDSA-------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276 (1174)
Q Consensus 206 lvl~PtraLa~Q~~~~l~~~~g~--~~v~lltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~l 276 (1174)
||++||++|+.|+++.+..+... ..+..+.|+.. +..+++|+|+||++|.+++.+ ....+.++++
T Consensus 200 LIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~------~~~~l~~v~~ 273 (518)
T PLN00206 200 MVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK------HDIELDNVSV 273 (518)
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc------CCccchheeE
Confidence 99999999999999888875432 23444444432 335789999999999999976 3556889999
Q ss_pred EEEccccccccCCcHHHHHHHHHHCCCCccEEEEccccCCh-HHHHHHHhcccCceeeecC--CCCccc-cEEeeccccc
Q 001047 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA-DELAGWIGQIHGKTELITS--SRRPVP-LTWYFSTKTA 352 (1174)
Q Consensus 277 VIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~-~~~~~~l~~~~~~~~~i~~--~~rpvp-l~~~~~~~~~ 352 (1174)
|||||||+|.+++|...+..++..++ ..|+++||||+++. +.++.++.. ....+.. ..++.. +.+.+.
T Consensus 274 lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~---~~~~i~~~~~~~~~~~v~q~~~---- 345 (518)
T PLN00206 274 LVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAK---DIILISIGNPNRPNKAVKQLAI---- 345 (518)
T ss_pred EEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCC---CCEEEEeCCCCCCCcceeEEEE----
Confidence 99999999999999998888888875 68999999999853 556655542 1111111 111100 000000
Q ss_pred ccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHH
Q 001047 353 LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 432 (1174)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 432 (1174)
++ . .. .....+.+.
T Consensus 346 -------------------~~-----------~----------------------------~~--------~k~~~l~~~ 359 (518)
T PLN00206 346 -------------------WV-----------E----------------------------TK--------QKKQKLFDI 359 (518)
T ss_pred -------------------ec-----------c----------------------------ch--------hHHHHHHHH
Confidence 00 0 00 000111222
Q ss_pred HHHHHhCCCCCeEEEecCHHHHHHHHHHhhh-cCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCH
Q 001047 433 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLED-CNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLP 511 (1174)
Q Consensus 433 l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~-~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~ 511 (1174)
+.... ....++||||+++..|+.++..|.. .++ .+..+||+|++
T Consensus 360 l~~~~-~~~~~~iVFv~s~~~a~~l~~~L~~~~g~----------------------------------~~~~~Hg~~~~ 404 (518)
T PLN00206 360 LKSKQ-HFKPPAVVFVSSRLGADLLANAITVVTGL----------------------------------KALSIHGEKSM 404 (518)
T ss_pred HHhhc-ccCCCEEEEcCCchhHHHHHHHHhhccCc----------------------------------ceEEeeCCCCH
Confidence 22111 1235899999999999999988863 232 57889999999
Q ss_pred HHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 512 ~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
.+|..+++.|++|.++|||||+++++|||+|++++||+ ++.|.+..+|+||+|||||.| ..|.+++|.++
T Consensus 405 ~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~--------~d~P~s~~~yihRiGRaGR~g--~~G~ai~f~~~ 474 (518)
T PLN00206 405 KERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII--------FDMPNTIKEYIHQIGRASRMG--EKGTAIVFVNE 474 (518)
T ss_pred HHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE--------eCCCCCHHHHHHhccccccCC--CCeEEEEEEch
Confidence 99999999999999999999999999999999999999 899999999999999999999 78999999876
Q ss_pred CC
Q 001047 592 YE 593 (1174)
Q Consensus 592 ~~ 593 (1174)
.+
T Consensus 475 ~~ 476 (518)
T PLN00206 475 ED 476 (518)
T ss_pred hH
Confidence 43
No 16
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.3e-44 Score=424.61 Aligned_cols=329 Identities=22% Similarity=0.222 Sum_probs=256.5
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh----------cCCeEEE
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA----------NQRRIFY 207 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~----------~g~rvlv 207 (1174)
.|.++++.+...+.+.......|+|+|.+||+.+++|+|++++||||||||++|++|+++.+. .+.++||
T Consensus 9 ~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~li 88 (423)
T PRK04837 9 KFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALI 88 (423)
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEE
Confidence 466778887788888887777899999999999999999999999999999999999998774 2358999
Q ss_pred EcccHHHHHHHHHHHHHHhC--CCeEEEEeCCCC-------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEE
Q 001047 208 TTPLKALSNQKFREFRETFG--DNNVGLLTGDSA-------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIV 278 (1174)
Q Consensus 208 l~PtraLa~Q~~~~l~~~~g--~~~v~lltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVI 278 (1174)
++||++|+.|+++.+..+.. +..++.+.|+.. ...+++|+|+||++|.+++.. ....+.++++||
T Consensus 89 l~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~------~~~~l~~v~~lV 162 (423)
T PRK04837 89 MAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ------NHINLGAIQVVV 162 (423)
T ss_pred ECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc------CCcccccccEEE
Confidence 99999999999998877543 356788887654 234689999999999999875 345688999999
Q ss_pred EccccccccCCcHHHHHHHHHHCCC--CccEEEEccccCCh-HHHH-HHHhcccCceeeecC-CCCc-cccEEeeccccc
Q 001047 279 LDEVHYLSDISRGTVWEEIIIYCPK--EVQIICLSATVANA-DELA-GWIGQIHGKTELITS-SRRP-VPLTWYFSTKTA 352 (1174)
Q Consensus 279 iDEaH~l~d~~~g~~~e~ii~~l~~--~~qiI~LSATl~n~-~~~~-~~l~~~~~~~~~i~~-~~rp-vpl~~~~~~~~~ 352 (1174)
|||||++.+.+|...+..++..++. ..+.+++|||++.. ..+. .++. .+..+... .... ..+...+
T Consensus 163 iDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~---~p~~i~v~~~~~~~~~i~~~~----- 234 (423)
T PRK04837 163 LDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMN---NPEYVEVEPEQKTGHRIKEEL----- 234 (423)
T ss_pred EecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCC---CCEEEEEcCCCcCCCceeEEE-----
Confidence 9999999999999999999888874 56689999999742 2222 1221 11111100 0000 0000000
Q ss_pred ccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHH
Q 001047 353 LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 432 (1174)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 432 (1174)
+ + .........
T Consensus 235 --------------------~---------~----------------------------------------~~~~~k~~~ 245 (423)
T PRK04837 235 --------------------F---------Y----------------------------------------PSNEEKMRL 245 (423)
T ss_pred --------------------E---------e----------------------------------------CCHHHHHHH
Confidence 0 0 000011122
Q ss_pred HHHH-HhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCH
Q 001047 433 LWHL-RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLP 511 (1174)
Q Consensus 433 l~~l-~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~ 511 (1174)
+..+ ......++||||+++..|+.++..|...++ .+.++||+|++
T Consensus 246 l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~----------------------------------~v~~lhg~~~~ 291 (423)
T PRK04837 246 LQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGH----------------------------------RVGLLTGDVAQ 291 (423)
T ss_pred HHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCC----------------------------------cEEEecCCCCh
Confidence 2222 223456899999999999999999976654 68999999999
Q ss_pred HHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 512 ~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
.+|..+++.|++|+++|||||+++++|||+|++++||+ ++.|.+..+|+||+|||||.| ..|.+++|.++
T Consensus 292 ~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~--------~d~P~s~~~yiqR~GR~gR~G--~~G~ai~~~~~ 361 (423)
T PRK04837 292 KKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN--------YDLPDDCEDYVHRIGRTGRAG--ASGHSISLACE 361 (423)
T ss_pred hHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE--------eCCCCchhheEeccccccCCC--CCeeEEEEeCH
Confidence 99999999999999999999999999999999999999 899999999999999999999 78999999877
Q ss_pred CC
Q 001047 592 YE 593 (1174)
Q Consensus 592 ~~ 593 (1174)
.+
T Consensus 362 ~~ 363 (423)
T PRK04837 362 EY 363 (423)
T ss_pred HH
Confidence 43
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-43 Score=433.38 Aligned_cols=329 Identities=18% Similarity=0.198 Sum_probs=258.2
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc----------CCeEEE
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN----------QRRIFY 207 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~----------g~rvlv 207 (1174)
.|..|++.+.....+.+.....|+|+|.++|+.+++|+|++++||||||||++|++|+++.+.. +.++||
T Consensus 10 ~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLI 89 (572)
T PRK04537 10 TFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALI 89 (572)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEE
Confidence 3667777777888888887788999999999999999999999999999999999999987742 358999
Q ss_pred EcccHHHHHHHHHHHHHHhCC--CeEEEEeCCCCC-------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEE
Q 001047 208 TTPLKALSNQKFREFRETFGD--NNVGLLTGDSAI-------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIV 278 (1174)
Q Consensus 208 l~PtraLa~Q~~~~l~~~~g~--~~v~lltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVI 278 (1174)
++||++|++|+++.+..+... +.++.++|+... ..+++|+|+||++|.+++.... ...+..+++||
T Consensus 90 l~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~-----~~~l~~v~~lV 164 (572)
T PRK04537 90 LAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK-----VVSLHACEICV 164 (572)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-----ccchhheeeeE
Confidence 999999999999999886543 467888887653 3468999999999999887521 23577899999
Q ss_pred EccccccccCCcHHHHHHHHHHCCC--CccEEEEccccCCh-HHHH-HHHhcccCceeeecCCCC--ccccEEeeccccc
Q 001047 279 LDEVHYLSDISRGTVWEEIIIYCPK--EVQIICLSATVANA-DELA-GWIGQIHGKTELITSSRR--PVPLTWYFSTKTA 352 (1174)
Q Consensus 279 iDEaH~l~d~~~g~~~e~ii~~l~~--~~qiI~LSATl~n~-~~~~-~~l~~~~~~~~~i~~~~r--pvpl~~~~~~~~~ 352 (1174)
|||||+|.+.+|...+..++..++. ..|+++||||+++. ..+. .++. .+..++..... ...+.+.+..
T Consensus 165 iDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~---~p~~i~v~~~~~~~~~i~q~~~~--- 238 (572)
T PRK04537 165 LDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMN---EPEKLVVETETITAARVRQRIYF--- 238 (572)
T ss_pred ecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhc---CCcEEEeccccccccceeEEEEe---
Confidence 9999999999999999999998886 68999999999742 2222 2221 11111110000 0000000000
Q ss_pred ccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHH
Q 001047 353 LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 432 (1174)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 432 (1174)
.. .......
T Consensus 239 -------------------------------------------------------------~~----------~~~k~~~ 247 (572)
T PRK04537 239 -------------------------------------------------------------PA----------DEEKQTL 247 (572)
T ss_pred -------------------------------------------------------------cC----------HHHHHHH
Confidence 00 0001112
Q ss_pred HH-HHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCH
Q 001047 433 LW-HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLP 511 (1174)
Q Consensus 433 l~-~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~ 511 (1174)
+. .+......++||||+++..|+.+++.|...++ .+.++||+|++
T Consensus 248 L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~----------------------------------~v~~lhg~l~~ 293 (572)
T PRK04537 248 LLGLLSRSEGARTMVFVNTKAFVERVARTLERHGY----------------------------------RVGVLSGDVPQ 293 (572)
T ss_pred HHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCC----------------------------------CEEEEeCCCCH
Confidence 22 22334567899999999999999999986654 68999999999
Q ss_pred HHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 512 ~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
.+|..+++.|++|.++|||||+++++|||+|++++||+ |+.|.+..+|+||+|||||.| ..|.+|+|+++
T Consensus 294 ~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn--------yd~P~s~~~yvqRiGRaGR~G--~~G~ai~~~~~ 363 (572)
T PRK04537 294 KKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN--------YDLPFDAEDYVHRIGRTARLG--EEGDAISFACE 363 (572)
T ss_pred HHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE--------cCCCCCHHHHhhhhcccccCC--CCceEEEEecH
Confidence 99999999999999999999999999999999999999 899999999999999999999 78999988876
Q ss_pred C
Q 001047 592 Y 592 (1174)
Q Consensus 592 ~ 592 (1174)
.
T Consensus 364 ~ 364 (572)
T PRK04537 364 R 364 (572)
T ss_pred H
Confidence 3
No 18
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.5e-43 Score=424.37 Aligned_cols=330 Identities=20% Similarity=0.252 Sum_probs=263.6
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc-------CCeEEEEcc
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN-------QRRIFYTTP 210 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~-------g~rvlvl~P 210 (1174)
.|.++++.+...+.+.......|+++|.++++.+++|+|++++||||+|||++|++|+++.+.. +.++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 3667777777888888888888999999999999999999999999999999999999988742 358999999
Q ss_pred cHHHHHHHHHHHHHHhC--CCeEEEEeCCCCC-------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcc
Q 001047 211 LKALSNQKFREFRETFG--DNNVGLLTGDSAI-------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDE 281 (1174)
Q Consensus 211 traLa~Q~~~~l~~~~g--~~~v~lltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDE 281 (1174)
|++|+.|+++.+..+.. +..++.++|+... ..+++|+|+||++|.+++.. ....+.++++|||||
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~------~~~~~~~v~~lViDE 155 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE------ENFDCRAVETLILDE 155 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc------CCcCcccCCEEEEEC
Confidence 99999999998887543 3578889998753 35689999999999998875 344578899999999
Q ss_pred ccccccCCcHHHHHHHHHHCCCCccEEEEccccCC--hHHHHHHHhcccCceeeecCCCCcc--ccEEeecccccccccc
Q 001047 282 VHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN--ADELAGWIGQIHGKTELITSSRRPV--PLTWYFSTKTALLPLL 357 (1174)
Q Consensus 282 aH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n--~~~~~~~l~~~~~~~~~i~~~~rpv--pl~~~~~~~~~~~~~~ 357 (1174)
||+|.+++|+..+..+...++...|+++||||++. ...+..++... +..+.....+.. .+.+++..
T Consensus 156 ah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~i~~~~~~-------- 225 (434)
T PRK11192 156 ADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLND--PVEVEAEPSRRERKKIHQWYYR-------- 225 (434)
T ss_pred HHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccC--CEEEEecCCcccccCceEEEEE--------
Confidence 99999999999999999999888999999999964 35555555321 111110000000 00000000
Q ss_pred cccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHH
Q 001047 358 DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437 (1174)
Q Consensus 358 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 437 (1174)
. ........++..+.
T Consensus 226 --------------------------------------------------------~---------~~~~~k~~~l~~l~ 240 (434)
T PRK11192 226 --------------------------------------------------------A---------DDLEHKTALLCHLL 240 (434)
T ss_pred --------------------------------------------------------e---------CCHHHHHHHHHHHH
Confidence 0 00112233444444
Q ss_pred hC-CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHH
Q 001047 438 SR-DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSF 516 (1174)
Q Consensus 438 ~~-~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~ 516 (1174)
.. ...++||||+++..|+.++..|...++ .+.++||+|++.+|..
T Consensus 241 ~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~----------------------------------~~~~l~g~~~~~~R~~ 286 (434)
T PRK11192 241 KQPEVTRSIVFVRTRERVHELAGWLRKAGI----------------------------------NCCYLEGEMVQAKRNE 286 (434)
T ss_pred hcCCCCeEEEEeCChHHHHHHHHHHHhCCC----------------------------------CEEEecCCCCHHHHHH
Confidence 43 557899999999999999999986554 6889999999999999
Q ss_pred HHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 517 IEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 517 v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
++..|++|.++|||||+++++|||+|++++||+ ++.|.+...|+||+|||||.| ..|.++++.+..
T Consensus 287 ~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~--------~d~p~s~~~yiqr~GR~gR~g--~~g~ai~l~~~~ 352 (434)
T PRK11192 287 AIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN--------FDMPRSADTYLHRIGRTGRAG--RKGTAISLVEAH 352 (434)
T ss_pred HHHHHhCCCCcEEEEccccccCccCCCCCEEEE--------ECCCCCHHHHhhcccccccCC--CCceEEEEecHH
Confidence 999999999999999999999999999999999 899999999999999999999 788898888653
No 19
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1e-43 Score=432.70 Aligned_cols=335 Identities=17% Similarity=0.142 Sum_probs=258.9
Q ss_pred HHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc--------CCeEEEE
Q 001047 137 NEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN--------QRRIFYT 208 (1174)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~--------g~rvlvl 208 (1174)
..|.+.++.....+.+.......|+|+|.++||.+++|+|+|++||||||||++|++|++..+.. +..+||+
T Consensus 130 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL 209 (545)
T PTZ00110 130 VSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVL 209 (545)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 34555566666677777777778999999999999999999999999999999999999877642 5689999
Q ss_pred cccHHHHHHHHHHHHHHhCC--CeEEEEeCCCCC-------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEE
Q 001047 209 TPLKALSNQKFREFRETFGD--NNVGLLTGDSAI-------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVL 279 (1174)
Q Consensus 209 ~PtraLa~Q~~~~l~~~~g~--~~v~lltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIi 279 (1174)
+||++||.|+++.+.++... ..+..+.|+... ...++|+|+||++|.+++.. ....+.++++|||
T Consensus 210 ~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~------~~~~l~~v~~lVi 283 (545)
T PTZ00110 210 APTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES------NVTNLRRVTYLVL 283 (545)
T ss_pred CChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc------CCCChhhCcEEEe
Confidence 99999999999999885432 456666666542 34689999999999999976 3456889999999
Q ss_pred ccccccccCCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHHHHhcccCceeeecCCCC-c--cccEEeecccccccc
Q 001047 280 DEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTELITSSRR-P--VPLTWYFSTKTALLP 355 (1174)
Q Consensus 280 DEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~~l~~~~~~~~~i~~~~r-p--vpl~~~~~~~~~~~~ 355 (1174)
||||+|.+++|...+..++..++++.|++++|||++. ...++.++... .+..+...... . ..+.+.+.
T Consensus 284 DEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~-~~v~i~vg~~~l~~~~~i~q~~~------- 355 (545)
T PTZ00110 284 DEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKE-EPVHVNVGSLDLTACHNIKQEVF------- 355 (545)
T ss_pred ehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhcc-CCEEEEECCCccccCCCeeEEEE-------
Confidence 9999999999999999999999999999999999974 34455444321 01111110000 0 00000000
Q ss_pred cccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHH
Q 001047 356 LLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH 435 (1174)
Q Consensus 356 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 435 (1174)
.+ .. ......+..++..
T Consensus 356 ----------------~~----------------------------------------~~-------~~k~~~L~~ll~~ 372 (545)
T PTZ00110 356 ----------------VV----------------------------------------EE-------HEKRGKLKMLLQR 372 (545)
T ss_pred ----------------EE----------------------------------------ec-------hhHHHHHHHHHHH
Confidence 00 00 0001112223333
Q ss_pred HHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHH
Q 001047 436 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKS 515 (1174)
Q Consensus 436 l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~ 515 (1174)
+.. ...++||||++++.|+.++..|...++ .+..+||++++.+|+
T Consensus 373 ~~~-~~~k~LIF~~t~~~a~~l~~~L~~~g~----------------------------------~~~~ihg~~~~~eR~ 417 (545)
T PTZ00110 373 IMR-DGDKILIFVETKKGADFLTKELRLDGW----------------------------------PALCIHGDKKQEERT 417 (545)
T ss_pred hcc-cCCeEEEEecChHHHHHHHHHHHHcCC----------------------------------cEEEEECCCcHHHHH
Confidence 322 457999999999999999999976554 577899999999999
Q ss_pred HHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 516 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 516 ~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
.+++.|++|.++|||||+++++|||+|++++||+ ++.|.++.+|+||+|||||.| ..|.+++|.++.+
T Consensus 418 ~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~--------~d~P~s~~~yvqRiGRtGR~G--~~G~ai~~~~~~~ 485 (545)
T PTZ00110 418 WVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN--------FDFPNQIEDYVHRIGRTGRAG--AKGASYTFLTPDK 485 (545)
T ss_pred HHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE--------eCCCCCHHHHHHHhcccccCC--CCceEEEEECcch
Confidence 9999999999999999999999999999999999 899999999999999999999 7899999988754
No 20
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=3.4e-44 Score=400.80 Aligned_cols=359 Identities=30% Similarity=0.392 Sum_probs=282.5
Q ss_pred ccCCcCChHHHhhcCCCCCCHHHHHHHHH-HHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHH
Q 001047 142 FGNEMIDVDELASIYDFRIDKFQRSSIEA-FLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKF 219 (1174)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~-ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~ 219 (1174)
+..+......++..+...+.|+|.-|++. +++|+|.+|..+|+||||+++.++-+..+. .|++.+|++|..|||||+|
T Consensus 199 Ldipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy 278 (830)
T COG1202 199 LDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKY 278 (830)
T ss_pred cCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchH
Confidence 33343344456666677899999999987 889999999999999999999999665554 5899999999999999999
Q ss_pred HHHHHHhCCC--eEEEEeCCC-----------CCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 220 REFRETFGDN--NVGLLTGDS-----------AINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 220 ~~l~~~~g~~--~v~lltGd~-----------~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
++|++.++.. .+.+-.|-. ....+++|+|+|+|-+-.+|.. ...+.+++.|||||+|.+.
T Consensus 279 ~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt-------g~~lgdiGtVVIDEiHtL~ 351 (830)
T COG1202 279 EDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT-------GKDLGDIGTVVIDEIHTLE 351 (830)
T ss_pred HHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc-------CCcccccceEEeeeeeecc
Confidence 9999988653 343434422 2345899999999999888875 3578899999999999999
Q ss_pred cCCcHHHHHHHHHH---CCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccc
Q 001047 287 DISRGTVWEEIIIY---CPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKH 363 (1174)
Q Consensus 287 d~~~g~~~e~ii~~---l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~ 363 (1174)
|..||+.+.-++.+ +-+..|+|+||||+.|+++++..|+ ..++..+.||||+..|+....+ . .
T Consensus 352 deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~-----a~lV~y~~RPVplErHlvf~~~--------e-~ 417 (830)
T COG1202 352 DEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLG-----AKLVLYDERPVPLERHLVFARN--------E-S 417 (830)
T ss_pred chhcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhC-----CeeEeecCCCCChhHeeeeecC--------c-h
Confidence 99999998888654 4568999999999999999999998 6788889999999877542110 0 0
Q ss_pred cchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCC
Q 001047 364 MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 443 (1174)
Q Consensus 364 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 443 (1174)
-...+ + ..+.+ .++-..-...-.++
T Consensus 418 eK~~i----i---------------------------------------------~~L~k------~E~~~~sskg~rGQ 442 (830)
T COG1202 418 EKWDI----I---------------------------------------------ARLVK------REFSTESSKGYRGQ 442 (830)
T ss_pred HHHHH----H---------------------------------------------HHHHH------HHHhhhhccCcCCc
Confidence 00000 0 00000 00000001123479
Q ss_pred eEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhc
Q 001047 444 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR 523 (1174)
Q Consensus 444 ~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~ 523 (1174)
+|||++||+.|+.+|.+|...|+ .+.++|+||+..+|..|+..|.+
T Consensus 443 tIVFT~SRrr~h~lA~~L~~kG~----------------------------------~a~pYHaGL~y~eRk~vE~~F~~ 488 (830)
T COG1202 443 TIVFTYSRRRCHELADALTGKGL----------------------------------KAAPYHAGLPYKERKSVERAFAA 488 (830)
T ss_pred eEEEecchhhHHHHHHHhhcCCc----------------------------------ccccccCCCcHHHHHHHHHHHhc
Confidence 99999999999999999987776 68899999999999999999999
Q ss_pred CCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCC---------
Q 001047 524 GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG--------- 594 (1174)
Q Consensus 524 G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~--------- 594 (1174)
+.+.++|+|.+++.|||+|+-.|||.++. .+..|+|+.+|.||.|||||.+++..|.+|++..+...
T Consensus 489 q~l~~VVTTAAL~AGVDFPASQVIFEsLa----MG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TE 564 (830)
T COG1202 489 QELAAVVTTAALAAGVDFPASQVIFESLA----MGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETE 564 (830)
T ss_pred CCcceEeehhhhhcCCCCchHHHHHHHHH----cccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccH
Confidence 99999999999999999999999988642 25679999999999999999999999999999877431
Q ss_pred HHHHHHHhhCCCcceeeeec
Q 001047 595 AEECCKLLFAGVEPLVSQFT 614 (1174)
Q Consensus 595 ~~~~~~~~~~~~~pl~S~f~ 614 (1174)
-+..++++.+.++|+.-.+.
T Consensus 565 devA~kLL~s~~e~V~vey~ 584 (830)
T COG1202 565 DEVAFKLLESEPEPVIVEYD 584 (830)
T ss_pred HHHHHHHhcCCCCcceeccC
Confidence 22356777777777765543
No 21
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.6e-43 Score=431.08 Aligned_cols=331 Identities=21% Similarity=0.224 Sum_probs=261.5
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHH
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPLKAL 214 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~PtraL 214 (1174)
.|.++++++...+.+.+.....|+|+|.++|+.++.|+++|++||||||||++|.+|+++.+.. +.++||++||++|
T Consensus 7 ~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreL 86 (629)
T PRK11634 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTREL 86 (629)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHH
Confidence 4667778888888888888888999999999999999999999999999999999999988753 4589999999999
Q ss_pred HHHHHHHHHHHh---CCCeEEEEeCCCCC-------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc
Q 001047 215 SNQKFREFRETF---GDNNVGLLTGDSAI-------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 215 a~Q~~~~l~~~~---g~~~v~lltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~ 284 (1174)
+.|+++.+..+. .+..+..++|+... ...++|+|+||++|.+++.+ ....+.++++|||||||.
T Consensus 87 a~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r------~~l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 87 AVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR------GTLDLSKLSGLVLDEADE 160 (629)
T ss_pred HHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc------CCcchhhceEEEeccHHH
Confidence 999999887753 34567777776543 35789999999999999876 345688999999999999
Q ss_pred cccCCcHHHHHHHHHHCCCCccEEEEccccCCh-HHHHHHHhcccCceeee-cCCCCccc-cEEeecccccccccccccc
Q 001047 285 LSDISRGTVWEEIIIYCPKEVQIICLSATVANA-DELAGWIGQIHGKTELI-TSSRRPVP-LTWYFSTKTALLPLLDEKG 361 (1174)
Q Consensus 285 l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~-~~~~~~l~~~~~~~~~i-~~~~rpvp-l~~~~~~~~~~~~~~~~~~ 361 (1174)
|++++|...++.++..+|...|+++||||+++. ..+...+.. .+..+. .......+ +.+.+..
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~--~~~~i~i~~~~~~~~~i~q~~~~------------ 226 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMK--EPQEVRIQSSVTTRPDISQSYWT------------ 226 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcC--CCeEEEccCccccCCceEEEEEE------------
Confidence 999999999999999999999999999999853 333332211 111110 00000000 0000000
Q ss_pred cccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCC
Q 001047 362 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441 (1174)
Q Consensus 362 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 441 (1174)
. .. ......+...+.....
T Consensus 227 --v-------------------------------------------------~~----------~~k~~~L~~~L~~~~~ 245 (629)
T PRK11634 227 --V-------------------------------------------------WG----------MRKNEALVRFLEAEDF 245 (629)
T ss_pred --e-------------------------------------------------ch----------hhHHHHHHHHHHhcCC
Confidence 0 00 0000111222233445
Q ss_pred CCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHH
Q 001047 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 521 (1174)
Q Consensus 442 ~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F 521 (1174)
.++||||+++..|+.++..|...++ .+..+||+|++.+|+.+++.|
T Consensus 246 ~~~IVF~~tk~~a~~l~~~L~~~g~----------------------------------~~~~lhgd~~q~~R~~il~~F 291 (629)
T PRK11634 246 DAAIIFVRTKNATLEVAEALERNGY----------------------------------NSAALNGDMNQALREQTLERL 291 (629)
T ss_pred CCEEEEeccHHHHHHHHHHHHhCCC----------------------------------CEEEeeCCCCHHHHHHHHHHH
Confidence 6899999999999999999987665 688899999999999999999
Q ss_pred hcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 522 QRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 522 ~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
++|+++|||||+++++|||+|++++||+ ++.|.++..|+||+|||||.| ..|.+++++++.+
T Consensus 292 r~G~~~ILVATdv~arGIDip~V~~VI~--------~d~P~~~e~yvqRiGRtGRaG--r~G~ai~~v~~~e 353 (629)
T PRK11634 292 KDGRLDILIATDVAARGLDVERISLVVN--------YDIPMDSESYVHRIGRTGRAG--RAGRALLFVENRE 353 (629)
T ss_pred hCCCCCEEEEcchHhcCCCcccCCEEEE--------eCCCCCHHHHHHHhccccCCC--CcceEEEEechHH
Confidence 9999999999999999999999999999 899999999999999999999 7899999987643
No 22
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=8.4e-43 Score=435.92 Aligned_cols=345 Identities=25% Similarity=0.269 Sum_probs=253.6
Q ss_pred ChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHH
Q 001047 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN--QRRIFYTTPLKALSNQKFREFRET 225 (1174)
Q Consensus 148 ~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~--g~rvlvl~PtraLa~Q~~~~l~~~ 225 (1174)
..+.+++.....|+++|.+||+.+++|+|+++++|||||||++|.+|+++.+.+ +.++||++|||||++|+++.++++
T Consensus 25 l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l 104 (742)
T TIGR03817 25 VVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVREL 104 (742)
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHh
Confidence 344555555558999999999999999999999999999999999999998854 459999999999999999999985
Q ss_pred h-CCCeEEEEeCCCCC------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHH
Q 001047 226 F-GDNNVGLLTGDSAI------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII 298 (1174)
Q Consensus 226 ~-g~~~v~lltGd~~~------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii 298 (1174)
. .+.+++.++|+... ..+++|+|+||++|...+......| ...+.++++|||||||.+.+ .||..+..++
T Consensus 105 ~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~--~~~l~~l~~vViDEah~~~g-~fg~~~~~il 181 (742)
T TIGR03817 105 TLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARW--ARFLRRLRYVVIDECHSYRG-VFGSHVALVL 181 (742)
T ss_pred ccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHH--HHHHhcCCEEEEeChhhccC-ccHHHHHHHH
Confidence 3 24678889998763 3468999999999875443221111 12378999999999999986 5777665554
Q ss_pred HH-------CCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhh
Q 001047 299 IY-------CPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 371 (1174)
Q Consensus 299 ~~-------l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 371 (1174)
.. .+.++|+|++|||++|+.+++.++.. .+..++..+..|.....+..............+
T Consensus 182 ~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g--~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~---------- 249 (742)
T TIGR03817 182 RRLRRLCARYGASPVFVLASATTADPAAAASRLIG--APVVAVTEDGSPRGARTVALWEPPLTELTGENG---------- 249 (742)
T ss_pred HHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcC--CCeEEECCCCCCcCceEEEEecCCccccccccc----------
Confidence 43 35678999999999999888877654 234455444444332221110000000000000
Q ss_pred hhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCH
Q 001047 372 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451 (1174)
Q Consensus 372 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr 451 (1174)
. ..+..........+..+... ..++||||+|+
T Consensus 250 --------------------------~---------------------~~r~~~~~~~~~~l~~l~~~-~~~~IVF~~sr 281 (742)
T TIGR03817 250 --------------------------A---------------------PVRRSASAEAADLLADLVAE-GARTLTFVRSR 281 (742)
T ss_pred --------------------------c---------------------ccccchHHHHHHHHHHHHHC-CCCEEEEcCCH
Confidence 0 00000011233344444443 46999999999
Q ss_pred HHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEe
Q 001047 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 531 (1174)
Q Consensus 452 ~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVA 531 (1174)
+.|+.++..|...- .. ....+..++..|||||++.+|..+++.|++|++++|||
T Consensus 282 ~~ae~l~~~l~~~l--------------~~------------~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVa 335 (742)
T TIGR03817 282 RGAELVAAIARRLL--------------GE------------VDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVAT 335 (742)
T ss_pred HHHHHHHHHHHHHH--------------Hh------------hccccccchhheecCCCHHHHHHHHHHHHcCCceEEEE
Confidence 99999998876310 00 00112346889999999999999999999999999999
Q ss_pred chhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 532 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 532 T~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
|+++++|||+|++++||+ ++.|.+..+|+||+|||||.| ..|.++++.+.
T Consensus 336 Td~lerGIDI~~vd~VI~--------~~~P~s~~~y~qRiGRaGR~G--~~g~ai~v~~~ 385 (742)
T TIGR03817 336 TNALELGVDISGLDAVVI--------AGFPGTRASLWQQAGRAGRRG--QGALVVLVARD 385 (742)
T ss_pred CchHhccCCcccccEEEE--------eCCCCCHHHHHHhccccCCCC--CCcEEEEEeCC
Confidence 999999999999999999 889999999999999999999 67999988764
No 23
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.5e-43 Score=389.71 Aligned_cols=339 Identities=21% Similarity=0.247 Sum_probs=268.8
Q ss_pred HHHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc-------CCeEEEE
Q 001047 136 CNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN-------QRRIFYT 208 (1174)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~-------g~rvlvl 208 (1174)
...+..+.+++....+++.+....+|++|+..|+.++.|+|+++.|.||+|||++|++|+++.+.+ +..++|+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 345667788888899999999989999999999999999999999999999999999999998753 4589999
Q ss_pred cccHHHHHHHHHHHHHHhC---CCeEEEEeCCCCC-------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEE
Q 001047 209 TPLKALSNQKFREFRETFG---DNNVGLLTGDSAI-------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIV 278 (1174)
Q Consensus 209 ~PtraLa~Q~~~~l~~~~g---~~~v~lltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVI 278 (1174)
+|||+||.|++.+.++.+. ...++++.|+... ...++|+|+|||+|.++|.++.++ ...+++++|
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f-----~~r~~k~lv 235 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGF-----LFRNLKCLV 235 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcc-----hhhccceeE
Confidence 9999999999999988643 4578888888763 348999999999999999997543 456779999
Q ss_pred EccccccccCCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHHHHhcccCceeeecCCCCccccEEeecccccccccc
Q 001047 279 LDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL 357 (1174)
Q Consensus 279 iDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~ 357 (1174)
+||||+++|.+|...++.|+..+|...|.++||||.+. .++++...-. ..+..+.....
T Consensus 236 lDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~--~d~~~v~~~d~------------------ 295 (543)
T KOG0342|consen 236 LDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALK--RDPVFVNVDDG------------------ 295 (543)
T ss_pred eecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhc--CCceEeecCCC------------------
Confidence 99999999999999999999999999999999999974 3444433221 11111111110
Q ss_pred cccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHH
Q 001047 358 DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437 (1174)
Q Consensus 358 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 437 (1174)
........+.+.|+.. ........++..+.
T Consensus 296 --~~~~The~l~Qgyvv~------------------------------------------------~~~~~f~ll~~~LK 325 (543)
T KOG0342|consen 296 --GERETHERLEQGYVVA------------------------------------------------PSDSRFSLLYTFLK 325 (543)
T ss_pred --CCcchhhcccceEEec------------------------------------------------cccchHHHHHHHHH
Confidence 0000111111111100 00001122223333
Q ss_pred hCCC-CCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHH
Q 001047 438 SRDM-LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSF 516 (1174)
Q Consensus 438 ~~~~-~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~ 516 (1174)
+... .++||||.|.......+..|....+ .|..+||++++..|..
T Consensus 326 k~~~~~KiiVF~sT~~~vk~~~~lL~~~dl----------------------------------pv~eiHgk~~Q~kRT~ 371 (543)
T KOG0342|consen 326 KNIKRYKIIVFFSTCMSVKFHAELLNYIDL----------------------------------PVLEIHGKQKQNKRTS 371 (543)
T ss_pred HhcCCceEEEEechhhHHHHHHHHHhhcCC----------------------------------chhhhhcCCcccccch
Confidence 3322 7999999999999999988875554 5777999999999999
Q ss_pred HHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 517 IEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 517 v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
+...|++.+--|||||+++|||+|+|+|++||. +++|-.+.+|+||+||+||.| +.|.++++..|++
T Consensus 372 ~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ--------~~~P~d~~~YIHRvGRTaR~g--k~G~alL~l~p~E 438 (543)
T KOG0342|consen 372 TFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ--------YDPPSDPEQYIHRVGRTAREG--KEGKALLLLAPWE 438 (543)
T ss_pred HHHHHhhcccceEEecchhhccCCCCCceEEEE--------eCCCCCHHHHHHHhccccccC--CCceEEEEeChhH
Confidence 999999999999999999999999999999999 999999999999999999998 8999999998876
No 24
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-43 Score=375.84 Aligned_cols=345 Identities=18% Similarity=0.253 Sum_probs=275.4
Q ss_pred HHHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEcccH
Q 001047 136 CNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPLK 212 (1174)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~Ptr 212 (1174)
...|..+|++++..+.++.+.-.+|||+|..|||.|+.|+|+|.+|.||||||++|.+||++.+.. |--++|++|||
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTr 85 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTR 85 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchH
Confidence 356888999999999999999999999999999999999999999999999999999999999975 45899999999
Q ss_pred HHHHHHHHHHHHHhC--CCeEEEEeCCCC-------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccc
Q 001047 213 ALSNQKFREFRETFG--DNNVGLLTGDSA-------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283 (1174)
Q Consensus 213 aLa~Q~~~~l~~~~g--~~~v~lltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH 283 (1174)
+|+.|+.+.|...-. ..++.++.|+.. ...+++++|+|||+|..++..+.+. ....+.++.++|+|||+
T Consensus 86 ELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~--~~~~~~rlkflVlDEAD 163 (442)
T KOG0340|consen 86 ELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGV--CSWIFQRLKFLVLDEAD 163 (442)
T ss_pred HHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCcc--chhhhhceeeEEecchh
Confidence 999999999987322 247888888764 4568999999999999999875433 23457899999999999
Q ss_pred ccccCCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccc
Q 001047 284 YLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKH 363 (1174)
Q Consensus 284 ~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~ 363 (1174)
.+.+..|...++-+...+|...|.++||||+.+. +...++. ++-. +.+.. +.. ..+..
T Consensus 164 rvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~--i~ql~~~-----~i~k----~~a~~--~e~---------~~~vs 221 (442)
T KOG0340|consen 164 RVLAGCFPDILEGIEECLPKPRQTLLFSATITDT--IKQLFGC-----PITK----SIAFE--LEV---------IDGVS 221 (442)
T ss_pred hhhccchhhHHhhhhccCCCccceEEEEeehhhH--HHHhhcC-----Cccc----ccceE--Eec---------cCCCC
Confidence 9999999999999999999999999999999632 2222221 1100 00000 000 01222
Q ss_pred cchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCC
Q 001047 364 MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 443 (1174)
Q Consensus 364 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 443 (1174)
....+...|+..+..... ...+..|....+...+.
T Consensus 222 tvetL~q~yI~~~~~vkd---------------------------------------------aYLv~~Lr~~~~~~~~s 256 (442)
T KOG0340|consen 222 TVETLYQGYILVSIDVKD---------------------------------------------AYLVHLLRDFENKENGS 256 (442)
T ss_pred chhhhhhheeecchhhhH---------------------------------------------HHHHHHHhhhhhccCce
Confidence 233343444422111100 11234455555556788
Q ss_pred eEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhc
Q 001047 444 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR 523 (1174)
Q Consensus 444 ~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~ 523 (1174)
++||+++..+|+.++..|....+ .+..+||.|++.+|...+.+|+.
T Consensus 257 imIFvnttr~cQ~l~~~l~~le~----------------------------------r~~~lHs~m~Q~eR~~aLsrFrs 302 (442)
T KOG0340|consen 257 IMIFVNTTRECQLLSMTLKNLEV----------------------------------RVVSLHSQMPQKERLAALSRFRS 302 (442)
T ss_pred EEEEeehhHHHHHHHHHHhhhce----------------------------------eeeehhhcchHHHHHHHHHHHhh
Confidence 99999999999999988875554 78999999999999999999999
Q ss_pred CCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 524 GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 524 G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
+.++|||||+++++|+|||.|.+||| ++.|.+|.+|+||+||++|+| ..|.++.+.++.+
T Consensus 303 ~~~~iliaTDVAsRGLDIP~V~LVvN--------~diPr~P~~yiHRvGRtARAG--R~G~aiSivt~rD 362 (442)
T KOG0340|consen 303 NAARILIATDVASRGLDIPTVELVVN--------HDIPRDPKDYIHRVGRTARAG--RKGMAISIVTQRD 362 (442)
T ss_pred cCccEEEEechhhcCCCCCceeEEEe--------cCCCCCHHHHHHhhcchhccc--CCcceEEEechhh
Confidence 99999999999999999999999999 999999999999999999999 8899998887643
No 25
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-43 Score=388.76 Aligned_cols=350 Identities=21% Similarity=0.238 Sum_probs=277.3
Q ss_pred HHHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc-------CCeEEEE
Q 001047 136 CNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN-------QRRIFYT 208 (1174)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~-------g~rvlvl 208 (1174)
...|..|+++......++......++.+|+++|+..++|+|||..|.||||||++|++|+++.+.. |--+|||
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 457888999999999999999999999999999999999999999999999999999999998853 5589999
Q ss_pred cccHHHHHHHHHHHHHH--hCCCeEEEEeCCCCCC------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEc
Q 001047 209 TPLKALSNQKFREFRET--FGDNNVGLLTGDSAIN------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLD 280 (1174)
Q Consensus 209 ~PtraLa~Q~~~~l~~~--~g~~~v~lltGd~~~~------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiD 280 (1174)
+|||+||.|++..+.+. +.....|++.|+.... .+.+|+|||||+|+.++..+.. ....++.++|+|
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~-----f~t~~lQmLvLD 222 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPN-----FSTSNLQMLVLD 222 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCC-----CCCCcceEEEec
Confidence 99999999999999883 3456789999987643 4789999999999999987643 345689999999
Q ss_pred cccccccCCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHHHHhcccCceeeec---CCCCccccEEeeccccccccc
Q 001047 281 EVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTELIT---SSRRPVPLTWYFSTKTALLPL 356 (1174)
Q Consensus 281 EaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~~l~~~~~~~~~i~---~~~rpvpl~~~~~~~~~~~~~ 356 (1174)
||++|+|++|...+..|+..+|+..|+++||||..+ ..+++..--. ...+..++ ....|..|.++|...
T Consensus 223 EADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~-dP~~vsvhe~a~~atP~~L~Q~y~~v------ 295 (758)
T KOG0343|consen 223 EADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLK-DPVYVSVHENAVAATPSNLQQSYVIV------ 295 (758)
T ss_pred cHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcC-CCcEEEEeccccccChhhhhheEEEE------
Confidence 999999999999999999999999999999999874 4555543211 11111111 011122222222110
Q ss_pred ccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHH
Q 001047 357 LDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL 436 (1174)
Q Consensus 357 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l 436 (1174)
.....++.|..+
T Consensus 296 --------------------------------------------------------------------~l~~Ki~~L~sF 307 (758)
T KOG0343|consen 296 --------------------------------------------------------------------PLEDKIDMLWSF 307 (758)
T ss_pred --------------------------------------------------------------------ehhhHHHHHHHH
Confidence 012233444443
Q ss_pred Hh-CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHH
Q 001047 437 RS-RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKS 515 (1174)
Q Consensus 437 ~~-~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~ 515 (1174)
.. +...+.|||+.|.+.+..++..+..+.. ...+..+||+|++..|.
T Consensus 308 I~shlk~K~iVF~SscKqvkf~~e~F~rlrp--------------------------------g~~l~~L~G~~~Q~~R~ 355 (758)
T KOG0343|consen 308 IKSHLKKKSIVFLSSCKQVKFLYEAFCRLRP--------------------------------GIPLLALHGTMSQKKRI 355 (758)
T ss_pred HHhccccceEEEEehhhHHHHHHHHHHhcCC--------------------------------CCceeeeccchhHHHHH
Confidence 33 3456899999999999988887764321 11477899999999999
Q ss_pred HHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCH
Q 001047 516 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 595 (1174)
Q Consensus 516 ~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~ 595 (1174)
.|...|-+..--|||||+++++|+|+|+|++||. ++.|.++..|+||+||++|.+ ..|.++++.+|.+..
T Consensus 356 ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ--------~DCPedv~tYIHRvGRtAR~~--~~G~sll~L~psEeE 425 (758)
T KOG0343|consen 356 EVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ--------VDCPEDVDTYIHRVGRTARYK--ERGESLLMLTPSEEE 425 (758)
T ss_pred HHHHHHHHhcceEEEeehhhhccCCCcccceEEE--------ecCchhHHHHHHHhhhhhccc--CCCceEEEEcchhHH
Confidence 9999999999999999999999999999999999 999999999999999999998 899999999987633
Q ss_pred HHHHHHhhCCCcc
Q 001047 596 EECCKLLFAGVEP 608 (1174)
Q Consensus 596 ~~~~~~~~~~~~p 608 (1174)
.+...+.....|
T Consensus 426 -~~l~~Lq~k~I~ 437 (758)
T KOG0343|consen 426 -AMLKKLQKKKIP 437 (758)
T ss_pred -HHHHHHHHcCCC
Confidence 244444443333
No 26
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.2e-43 Score=390.33 Aligned_cols=355 Identities=21% Similarity=0.206 Sum_probs=276.3
Q ss_pred CCCCCCCCChhhhhhHHHHHHHHHHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHH
Q 001047 114 SSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~ 193 (1174)
........+|....+....+.....+.+.+++...+..+.......|+|+|.+|||..++++|+|..|.||||||++|++
T Consensus 222 rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~i 301 (673)
T KOG0333|consen 222 RDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLI 301 (673)
T ss_pred ccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchh
Confidence 33344444444444444445555666777777777788888888899999999999999999999999999999999999
Q ss_pred HHHHHHh------------cCCeEEEEcccHHHHHHHHHHHHHH---hCCCeEEEEeCCCC-------CCCCCcEEEEcH
Q 001047 194 AAVATVA------------NQRRIFYTTPLKALSNQKFREFRET---FGDNNVGLLTGDSA-------INREAQILIMTT 251 (1174)
Q Consensus 194 ~il~~l~------------~g~rvlvl~PtraLa~Q~~~~l~~~---~g~~~v~lltGd~~-------~~~~~~IlV~Tp 251 (1174)
|++..+. .|+.+++++|||+|+.|+..+-.++ +| +.+..+.|+.+ +..++.|+|+||
T Consensus 302 pLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg-~r~vsvigg~s~EEq~fqls~gceiviatP 380 (673)
T KOG0333|consen 302 PLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLG-IRTVSVIGGLSFEEQGFQLSMGCEIVIATP 380 (673)
T ss_pred hHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhccccc-ceEEEEecccchhhhhhhhhccceeeecCc
Confidence 9987653 3779999999999999999887763 33 33444445443 446899999999
Q ss_pred HHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCC-------------------------cc
Q 001047 252 EILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKE-------------------------VQ 306 (1174)
Q Consensus 252 e~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~-------------------------~q 306 (1174)
++|.+.|.+ ....++...+||+|||++|.|++|.+.+..++.++|.. .|
T Consensus 381 grLid~Len------r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrq 454 (673)
T KOG0333|consen 381 GRLIDSLEN------RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQ 454 (673)
T ss_pred hHHHHHHHH------HHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeE
Confidence 999999987 45568899999999999999999999999999887531 68
Q ss_pred EEEEccccCCh-HHHH-HHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCcc
Q 001047 307 IICLSATVANA-DELA-GWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 384 (1174)
Q Consensus 307 iI~LSATl~n~-~~~~-~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 384 (1174)
.++||||++.+ +.++ .||.. .-...+.+..+|.|....... ++
T Consensus 455 T~mftatm~p~verlar~ylr~--pv~vtig~~gk~~~rveQ~v~----------------------m~----------- 499 (673)
T KOG0333|consen 455 TVMFTATMPPAVERLARSYLRR--PVVVTIGSAGKPTPRVEQKVE----------------------MV----------- 499 (673)
T ss_pred EEEEecCCChHHHHHHHHHhhC--CeEEEeccCCCCccchheEEE----------------------Ee-----------
Confidence 99999999863 4443 34432 112233444555543211000 00
Q ss_pred CCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhc
Q 001047 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC 464 (1174)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~ 464 (1174)
+. -.....++..+.+....|+|||+|+++.|+.+|+.|.+.
T Consensus 500 -----------------------------~e----------d~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~ 540 (673)
T KOG0333|consen 500 -----------------------------SE----------DEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA 540 (673)
T ss_pred -----------------------------cc----------hHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc
Confidence 00 001112222333344679999999999999999999887
Q ss_pred CCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCc
Q 001047 465 NLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 544 (1174)
Q Consensus 465 ~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v 544 (1174)
|+ .+..+|||-++++|+.++..|++|...|||||+++++|||||+|
T Consensus 541 g~----------------------------------~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnV 586 (673)
T KOG0333|consen 541 GY----------------------------------KVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNV 586 (673)
T ss_pred cc----------------------------------eEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCcc
Confidence 76 78999999999999999999999999999999999999999999
Q ss_pred eEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 545 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 545 ~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
.+||+ |++..|+.+|+||+||+||+| ..|.++.|+++.+
T Consensus 587 SlVin--------ydmaksieDYtHRIGRTgRAG--k~GtaiSflt~~d 625 (673)
T KOG0333|consen 587 SLVIN--------YDMAKSIEDYTHRIGRTGRAG--KSGTAISFLTPAD 625 (673)
T ss_pred ceeee--------cchhhhHHHHHHHhccccccc--cCceeEEEeccch
Confidence 99999 999999999999999999999 8999999998866
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3e-42 Score=416.70 Aligned_cols=328 Identities=19% Similarity=0.181 Sum_probs=254.6
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc----------CCeEEE
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN----------QRRIFY 207 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~----------g~rvlv 207 (1174)
.|..+++.+.....+.+.....|+++|.++|+.+++|+|+|+++|||||||++|++|+++.+.+ +.++||
T Consensus 88 ~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLi 167 (475)
T PRK01297 88 RFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALI 167 (475)
T ss_pred CHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEE
Confidence 3556666777777777766667999999999999999999999999999999999999988753 358999
Q ss_pred EcccHHHHHHHHHHHHHHhC--CCeEEEEeCCCCC--------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEE
Q 001047 208 TTPLKALSNQKFREFRETFG--DNNVGLLTGDSAI--------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI 277 (1174)
Q Consensus 208 l~PtraLa~Q~~~~l~~~~g--~~~v~lltGd~~~--------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lV 277 (1174)
++||++|+.|+++.+..+.. +..+..++|+... ...++|+|+||++|..++.. ....+.++++|
T Consensus 168 l~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~------~~~~l~~l~~l 241 (475)
T PRK01297 168 IAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR------GEVHLDMVEVM 241 (475)
T ss_pred EeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc------CCcccccCceE
Confidence 99999999999999988643 3567778887542 24689999999999988765 35568899999
Q ss_pred EEccccccccCCcHHHHHHHHHHCCC--CccEEEEccccCC-hHHHHHHHhcccCceeeecCCCCcc---ccEEeecccc
Q 001047 278 VLDEVHYLSDISRGTVWEEIIIYCPK--EVQIICLSATVAN-ADELAGWIGQIHGKTELITSSRRPV---PLTWYFSTKT 351 (1174)
Q Consensus 278 IiDEaH~l~d~~~g~~~e~ii~~l~~--~~qiI~LSATl~n-~~~~~~~l~~~~~~~~~i~~~~rpv---pl~~~~~~~~ 351 (1174)
||||||.+.+.++...+..++..++. ..|++++|||+++ ...+..++.. .+ ..+......+ .+.+++..
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~--~~-~~v~~~~~~~~~~~~~~~~~~-- 316 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTT--DP-AIVEIEPENVASDTVEQHVYA-- 316 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhcc--CC-EEEEeccCcCCCCcccEEEEE--
Confidence 99999999999999999999988864 5799999999864 3444433321 11 1111000000 00000000
Q ss_pred cccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHH
Q 001047 352 ALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID 431 (1174)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 431 (1174)
.. ......
T Consensus 317 -------------------------------------------------------------~~-----------~~~k~~ 324 (475)
T PRK01297 317 -------------------------------------------------------------VA-----------GSDKYK 324 (475)
T ss_pred -------------------------------------------------------------ec-----------chhHHH
Confidence 00 001112
Q ss_pred HHHHH-HhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCC
Q 001047 432 TLWHL-RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCL 510 (1174)
Q Consensus 432 ~l~~l-~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~ 510 (1174)
.+..+ ......++||||+++..|+.++..|...++ .+..+||+|+
T Consensus 325 ~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~----------------------------------~~~~~~g~~~ 370 (475)
T PRK01297 325 LLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGI----------------------------------NAAQLSGDVP 370 (475)
T ss_pred HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCC----------------------------------CEEEEECCCC
Confidence 22222 223446899999999999999998876554 5888999999
Q ss_pred HHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeC
Q 001047 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 590 (1174)
Q Consensus 511 ~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~ 590 (1174)
+.+|..+++.|++|.++|||||+++++|||+|++++||+ ++.|.|..+|+||+|||||.| ..|.+++|.+
T Consensus 371 ~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~--------~~~P~s~~~y~Qr~GRaGR~g--~~g~~i~~~~ 440 (475)
T PRK01297 371 QHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN--------FTLPEDPDDYVHRIGRTGRAG--ASGVSISFAG 440 (475)
T ss_pred HHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE--------eCCCCCHHHHHHhhCccCCCC--CCceEEEEec
Confidence 999999999999999999999999999999999999999 899999999999999999999 6899998887
Q ss_pred CC
Q 001047 591 PY 592 (1174)
Q Consensus 591 ~~ 592 (1174)
+.
T Consensus 441 ~~ 442 (475)
T PRK01297 441 ED 442 (475)
T ss_pred HH
Confidence 64
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2e-42 Score=411.35 Aligned_cols=335 Identities=18% Similarity=0.231 Sum_probs=254.1
Q ss_pred HHHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh---cCCeEEEEcccH
Q 001047 136 CNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---NQRRIFYTTPLK 212 (1174)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~---~g~rvlvl~Ptr 212 (1174)
..+|..+++.+.....+.+.....|+|+|.+|++.+++|++++++||||||||++|++|++..+. .+.++||++|++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR 106 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence 35566667666666667665555799999999999999999999999999999999999998875 456899999999
Q ss_pred HHHHHHHHHHHHHhCC--CeEEEEeCCCCC-------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccc
Q 001047 213 ALSNQKFREFRETFGD--NNVGLLTGDSAI-------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283 (1174)
Q Consensus 213 aLa~Q~~~~l~~~~g~--~~v~lltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH 283 (1174)
+|+.|+++.+...... ..++.+.|+... ..+++|+|+||++|.+++.+ ....+.++++|||||||
T Consensus 107 ~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~------~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 107 ELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK------RHLRVDDLKLFILDEAD 180 (401)
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh------CCcccccccEEEEecHH
Confidence 9999999988875432 345556666532 34579999999999998875 34568899999999999
Q ss_pred ccccCCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccC-ceeeecCCCCccccEEeeccccccccccccccc
Q 001047 284 YLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KTELITSSRRPVPLTWYFSTKTALLPLLDEKGK 362 (1174)
Q Consensus 284 ~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~-~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~ 362 (1174)
++.+.+++..+.+++..++++.|++++|||+++. ...+...... +..+.... ....+
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~------------------- 238 (401)
T PTZ00424 181 EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNE--ILELTTKFMRDPKRILVKK-DELTL------------------- 238 (401)
T ss_pred HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHH--HHHHHHHHcCCCEEEEeCC-CCccc-------------------
Confidence 9998889888999999999999999999999852 2222211111 11110000 00000
Q ss_pred ccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHH-hCCC
Q 001047 363 HMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR-SRDM 441 (1174)
Q Consensus 363 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~-~~~~ 441 (1174)
..+...+.. ... .......+..+. ....
T Consensus 239 ---~~~~~~~~~--------------------------------------~~~----------~~~~~~~l~~~~~~~~~ 267 (401)
T PTZ00424 239 ---EGIRQFYVA--------------------------------------VEK----------EEWKFDTLCDLYETLTI 267 (401)
T ss_pred ---CCceEEEEe--------------------------------------cCh----------HHHHHHHHHHHHHhcCC
Confidence 000000000 000 000111122222 2345
Q ss_pred CCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHH
Q 001047 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 521 (1174)
Q Consensus 442 ~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F 521 (1174)
.++||||++++.|+.++..|...++ ++..+||+|++.+|..+++.|
T Consensus 268 ~~~ivF~~t~~~~~~l~~~l~~~~~----------------------------------~~~~~h~~~~~~~R~~i~~~f 313 (401)
T PTZ00424 268 TQAIIYCNTRRKVDYLTKKMHERDF----------------------------------TVSCMHGDMDQKDRDLIMREF 313 (401)
T ss_pred CeEEEEecCcHHHHHHHHHHHHCCC----------------------------------cEEEEeCCCCHHHHHHHHHHH
Confidence 6899999999999999998875543 689999999999999999999
Q ss_pred hcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 522 QRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 522 ~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
++|.++|||||+++++|||+|++++||+ ++.|.|..+|+||+|||||.| ..|.|++++++.+
T Consensus 314 ~~g~~~vLvaT~~l~~GiDip~v~~VI~--------~~~p~s~~~y~qr~GRagR~g--~~G~~i~l~~~~~ 375 (401)
T PTZ00424 314 RSGSTRVLITTDLLARGIDVQQVSLVIN--------YDLPASPENYIHRIGRSGRFG--RKGVAINFVTPDD 375 (401)
T ss_pred HcCCCCEEEEcccccCCcCcccCCEEEE--------ECCCCCHHHEeecccccccCC--CCceEEEEEcHHH
Confidence 9999999999999999999999999999 889999999999999999998 7899999987653
No 29
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-42 Score=377.13 Aligned_cols=351 Identities=19% Similarity=0.212 Sum_probs=266.9
Q ss_pred CCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc------C--CeEEEEcccHHHH
Q 001047 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN------Q--RRIFYTTPLKALS 215 (1174)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~------g--~rvlvl~PtraLa 215 (1174)
+++.....+...+.-.+||+|..+||.++.++||+|.|+||||||++|++|+++.+.+ + -.++||+|||+|+
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa 92 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELA 92 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHH
Confidence 4466677777776668999999999999999999999999999999999999999832 1 2689999999999
Q ss_pred HHHHHHHHH---HhCCCeEEEEeCCCCCC--------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc
Q 001047 216 NQKFREFRE---TFGDNNVGLLTGDSAIN--------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 216 ~Q~~~~l~~---~~g~~~v~lltGd~~~~--------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~ 284 (1174)
.|+.+.... .+.++++.++.|+.++. .+++|+|+|||+|.+|+.+... ...+.++.++|+||||+
T Consensus 93 ~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~----~l~~rsLe~LVLDEADr 168 (567)
T KOG0345|consen 93 RQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAE----KLSFRSLEILVLDEADR 168 (567)
T ss_pred HHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhh----hccccccceEEecchHh
Confidence 999877665 34567788888887654 4788999999999999987322 22355999999999999
Q ss_pred cccCCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHh-cccCceeeecCCCCccccEEeecccccccccccccccc
Q 001047 285 LSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG-QIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKH 363 (1174)
Q Consensus 285 l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~-~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~ 363 (1174)
++|++|...+..|+..+|+..++=+||||... +..+... ..+++..+....... ..
T Consensus 169 LldmgFe~~~n~ILs~LPKQRRTGLFSATq~~--~v~dL~raGLRNpv~V~V~~k~~---------------------~~ 225 (567)
T KOG0345|consen 169 LLDMGFEASVNTILSFLPKQRRTGLFSATQTQ--EVEDLARAGLRNPVRVSVKEKSK---------------------SA 225 (567)
T ss_pred HhcccHHHHHHHHHHhcccccccccccchhhH--HHHHHHHhhccCceeeeeccccc---------------------cc
Confidence 99999999999999999999999999999753 3333221 122232222211111 00
Q ss_pred cchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCC
Q 001047 364 MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 443 (1174)
Q Consensus 364 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 443 (1174)
.+..+...|+... .......++..+.+....+
T Consensus 226 tPS~L~~~Y~v~~------------------------------------------------a~eK~~~lv~~L~~~~~kK 257 (567)
T KOG0345|consen 226 TPSSLALEYLVCE------------------------------------------------ADEKLSQLVHLLNNNKDKK 257 (567)
T ss_pred CchhhcceeeEec------------------------------------------------HHHHHHHHHHHHhcccccc
Confidence 1111112222100 0112233344455566789
Q ss_pred eEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhc
Q 001047 444 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR 523 (1174)
Q Consensus 444 ~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~ 523 (1174)
+|||.+|...++.....+..+- ....+..+||.|.+..|..+++.|++
T Consensus 258 ~iVFF~TCasVeYf~~~~~~~l--------------------------------~~~~i~~iHGK~~q~~R~k~~~~F~~ 305 (567)
T KOG0345|consen 258 CIVFFPTCASVEYFGKLFSRLL--------------------------------KKREIFSIHGKMSQKARAKVLEAFRK 305 (567)
T ss_pred EEEEecCcchHHHHHHHHHHHh--------------------------------CCCcEEEecchhcchhHHHHHHHHHh
Confidence 9999999999988887776431 12368889999999999999999999
Q ss_pred CCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhh
Q 001047 524 GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 603 (1174)
Q Consensus 524 G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~ 603 (1174)
-.-.+|+|||++++|||||++++||+ +++|.++..|.||+||+||.| ..|.+++|..+.+ ..|...+.
T Consensus 306 ~~~~vl~~TDVaARGlDip~iD~VvQ--------~DpP~~~~~FvHR~GRTaR~g--r~G~Aivfl~p~E--~aYveFl~ 373 (567)
T KOG0345|consen 306 LSNGVLFCTDVAARGLDIPGIDLVVQ--------FDPPKDPSSFVHRCGRTARAG--REGNAIVFLNPRE--EAYVEFLR 373 (567)
T ss_pred ccCceEEeehhhhccCCCCCceEEEe--------cCCCCChhHHHhhcchhhhcc--CccceEEEecccH--HHHHHHHH
Confidence 88899999999999999999999999 999999999999999999999 8999999988854 45666666
Q ss_pred CCC-cceeeee
Q 001047 604 AGV-EPLVSQF 613 (1174)
Q Consensus 604 ~~~-~pl~S~f 613 (1174)
-.. .++++..
T Consensus 374 i~~~v~le~~~ 384 (567)
T KOG0345|consen 374 IKGKVELERID 384 (567)
T ss_pred hcCccchhhhc
Confidence 554 4444433
No 30
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.4e-42 Score=411.57 Aligned_cols=404 Identities=27% Similarity=0.363 Sum_probs=307.2
Q ss_pred CCHHHHHHHHHHHcC-CcEEEEccCCcchHHHHHHHHHHHHhcC-----------CeEEEEcccHHHHHHHHHHHHHHhC
Q 001047 160 IDKFQRSSIEAFLRG-SSVVVSAPTSSGKTLIAEAAAVATVANQ-----------RRIFYTTPLKALSNQKFREFRETFG 227 (1174)
Q Consensus 160 ~~~~Q~~ai~~ll~g-~~vlv~apTGsGKTlv~~~~il~~l~~g-----------~rvlvl~PtraLa~Q~~~~l~~~~g 227 (1174)
++.+|....++.+.+ .++++|||||+|||.++++-|++.+.++ .+++|++|.++|+..+...|.+++.
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla 389 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcc
Confidence 888999999998877 6999999999999999999999988643 2899999999999999999998765
Q ss_pred C--CeEEEEeCCCCCC----CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC
Q 001047 228 D--NNVGLLTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC 301 (1174)
Q Consensus 228 ~--~~v~lltGd~~~~----~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l 301 (1174)
. +.|+-+|||.... ..++|+|+|||..--.-.++. .....+-++++|+||+|.+.| .||++++.+..+.
T Consensus 390 ~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~g----draY~qlvrLlIIDEIHLLhD-dRGpvLESIVaRt 464 (1674)
T KOG0951|consen 390 PLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSG----DRAYEQLVRLLIIDEIHLLHD-DRGPVLESIVART 464 (1674)
T ss_pred ccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccC----chhHHHHHHHHhhhhhhhccc-ccchHHHHHHHHH
Confidence 4 5789999997644 479999999998754333211 123345689999999999876 8999999886543
Q ss_pred -------CCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhh
Q 001047 302 -------PKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQ 374 (1174)
Q Consensus 302 -------~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 374 (1174)
...++++|||||+||.++++.||.......+.+.+++||+|+.+.+.+...-.++..
T Consensus 465 ~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~---------------- 528 (1674)
T KOG0951|consen 465 FRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKR---------------- 528 (1674)
T ss_pred HHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHH----------------
Confidence 347899999999999999999999877778888999999999988765321111000
Q ss_pred cccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHH
Q 001047 375 LSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454 (1174)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~ 454 (1174)
+..+ .+...+ +-+...+..++|||+.||++.
T Consensus 529 -------------------------------------------~qam----Ne~~ye--KVm~~agk~qVLVFVHsRkET 559 (1674)
T KOG0951|consen 529 -------------------------------------------FQAM----NEACYE--KVLEHAGKNQVLVFVHSRKET 559 (1674)
T ss_pred -------------------------------------------HHHH----HHHHHH--HHHHhCCCCcEEEEEEechHH
Confidence 0000 001111 112334568999999999999
Q ss_pred HHHHHHhhhcCCCCHHhHHHHHHHHHHHH-------hhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCce
Q 001047 455 DAAVQYLEDCNLLDECEMSEVELALKRFR-------ILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVK 527 (1174)
Q Consensus 455 ~~la~~L~~~~~~~~~e~~~i~~~~~~~~-------~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ik 527 (1174)
-+.|+.+++..+ +...+..+.++-. ..........+.++|.+|+++||+||...+|..++.+|+.|.++
T Consensus 560 ~ktA~aIRd~~l----e~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iq 635 (1674)
T KOG0951|consen 560 AKTARAIRDKAL----EEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQ 635 (1674)
T ss_pred HHHHHHHHHHHh----hhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCcee
Confidence 999999885433 2222222222111 11111223367788999999999999999999999999999999
Q ss_pred EEEechhhhhcCCcCCceEEEecccccCCCCc--cccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhhCC
Q 001047 528 VVFATETLAAGINMPARTAVLSSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG 605 (1174)
Q Consensus 528 VLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~--~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~~~ 605 (1174)
|+|+|.|+++|||+|+.+|+|.++.-|+.+.. .++|+.+.+||.|||||.+.|..|..+++....+ -.++-.+.++
T Consensus 636 vlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se--~qyyls~mn~ 713 (1674)
T KOG0951|consen 636 VLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSE--LQYYLSLMNQ 713 (1674)
T ss_pred EEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchH--hhhhHHhhhh
Confidence 99999999999999999999999888776544 4689999999999999999999999998887654 3466677888
Q ss_pred CcceeeeeccchhHHHHHhhhchhccccCchhHHHHH
Q 001047 606 VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKAL 642 (1174)
Q Consensus 606 ~~pl~S~f~~~y~~vlnll~~~~~~~~~~~~~~~~~~ 642 (1174)
+.|++|+|.....--||. ..+.-+.+-.++++++
T Consensus 714 qLpiesq~~~rl~d~lna---eiv~Gv~~~~d~~~wl 747 (1674)
T KOG0951|consen 714 QLPIESQFVSRLADCLNA---EIVLGVRSARDAVDWL 747 (1674)
T ss_pred cCCChHHHHHHhhhhhhh---hhhcchhhHHHHHhhh
Confidence 999999998765544442 2222245555665554
No 31
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=5.8e-41 Score=427.62 Aligned_cols=323 Identities=26% Similarity=0.334 Sum_probs=238.1
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc---------CCeEEEEcccHHHHHHHHHHHHH-----
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN---------QRRIFYTTPLKALSNQKFREFRE----- 224 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~---------g~rvlvl~PtraLa~Q~~~~l~~----- 224 (1174)
.|+|+|.+|++.+++|+|++++||||||||++|.+|++..+.. +.++||++|||+|++|+++.+.+
T Consensus 32 ~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i 111 (876)
T PRK13767 32 TFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEI 111 (876)
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999987642 34799999999999999987653
Q ss_pred --Hh-------CCCeEEEEeCCCCCC-------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccC
Q 001047 225 --TF-------GDNNVGLLTGDSAIN-------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI 288 (1174)
Q Consensus 225 --~~-------g~~~v~lltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~ 288 (1174)
.+ ++..+++.+||+... ..++|+|+|||+|..++.... ....+.++++|||||||.+.+.
T Consensus 112 ~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~----~~~~l~~l~~VVIDE~H~l~~~ 187 (876)
T PRK13767 112 REIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPK----FREKLRTVKWVIVDEIHSLAEN 187 (876)
T ss_pred HHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChh----HHHHHhcCCEEEEechhhhccC
Confidence 11 245789999998643 368999999999987775421 1124789999999999999988
Q ss_pred CcHHHHHHHHH----HCCCCccEEEEccccCChHHHHHHHhccc-----CceeeecCCC-CccccEEeeccccccccccc
Q 001047 289 SRGTVWEEIII----YCPKEVQIICLSATVANADELAGWIGQIH-----GKTELITSSR-RPVPLTWYFSTKTALLPLLD 358 (1174)
Q Consensus 289 ~~g~~~e~ii~----~l~~~~qiI~LSATl~n~~~~~~~l~~~~-----~~~~~i~~~~-rpvpl~~~~~~~~~~~~~~~ 358 (1174)
.+|..++..+. ..+...|+|+||||++|.++++.|+.... .++.++...+ ++.++.... +.
T Consensus 188 ~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~-------p~-- 258 (876)
T PRK13767 188 KRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVIS-------PV-- 258 (876)
T ss_pred ccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEec-------cC--
Confidence 88887665543 33467899999999999999999997531 1222222111 111110000 00
Q ss_pred ccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHh
Q 001047 359 EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS 438 (1174)
Q Consensus 359 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 438 (1174)
..+ . .. ... .....+...+..+..
T Consensus 259 -------~~l----~----------~~----------------------------~~~-------~~~~~l~~~L~~~i~ 282 (876)
T PRK13767 259 -------DDL----I----------HT----------------------------PAE-------EISEALYETLHELIK 282 (876)
T ss_pred -------ccc----c----------cc----------------------------ccc-------hhHHHHHHHHHHHHh
Confidence 000 0 00 000 001122333343333
Q ss_pred CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHH
Q 001047 439 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 518 (1174)
Q Consensus 439 ~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~ 518 (1174)
. ..++||||+|++.|+.++..|..... + .....++++|||+|++.+|..++
T Consensus 283 ~-~~~~LVF~nTr~~ae~la~~L~~~~~---------------------~-------~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 283 E-HRTTLIFTNTRSGAERVLYNLRKRFP---------------------E-------EYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred c-CCCEEEEeCCHHHHHHHHHHHHHhch---------------------h-------hccccceeeeeCCCCHHHHHHHH
Confidence 3 46899999999999999998864210 0 01123799999999999999999
Q ss_pred HHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCC-CCccEEEE
Q 001047 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI-DNRGHVVL 587 (1174)
Q Consensus 519 ~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~-d~~G~~il 587 (1174)
+.|++|.++|||||+++++|||+|++++||+ ++.|.+..+|+||+|||||++. ...|.++.
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~--------~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVL--------LGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEE--------eCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 9999999999999999999999999999999 8899999999999999999742 34565554
No 32
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=7.2e-41 Score=412.68 Aligned_cols=333 Identities=19% Similarity=0.249 Sum_probs=242.7
Q ss_pred hccCCcCChHHHhhcCCC-CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHH
Q 001047 141 EFGNEMIDVDELASIYDF-RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKF 219 (1174)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~-~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~ 219 (1174)
.|++.......++..|++ .|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++.+|||+|+++|+.++.
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---~GiTLVISPLiSLmqDQV 517 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQI 517 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---CCcEEEEeCHHHHHHHHH
Confidence 355555555667777765 6999999999999999999999999999999999999754 678999999999999777
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-------------CCCCcEEEEcHHHHHH--HHhcccccccCCCCCCceeEEEEccccc
Q 001047 220 REFRETFGDNNVGLLTGDSAI-------------NREAQILIMTTEILRN--MLYQSVGMVSSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 220 ~~l~~~~g~~~v~lltGd~~~-------------~~~~~IlV~Tpe~L~~--~L~~~~~~~~~~~~l~~v~lVIiDEaH~ 284 (1174)
..+.. .| +.+..+.|+... ....+|+|+|||+|.. .+.+... .......+.+|||||||+
T Consensus 518 ~~L~~-~G-I~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~---~L~~~~~LslIVIDEAHc 592 (1195)
T PLN03137 518 MNLLQ-AN-IPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLE---NLNSRGLLARFVIDEAHC 592 (1195)
T ss_pred HHHHh-CC-CeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHH---hhhhccccceeccCcchh
Confidence 77766 33 556777776532 1468999999999752 1111000 011234589999999999
Q ss_pred cccCC--cHHHHHHH--HHHCCCCccEEEEccccCC--hHHHHHHHhcccCceeeecC-CCCccccEEeecccccccccc
Q 001047 285 LSDIS--RGTVWEEI--IIYCPKEVQIICLSATVAN--ADELAGWIGQIHGKTELITS-SRRPVPLTWYFSTKTALLPLL 357 (1174)
Q Consensus 285 l~d~~--~g~~~e~i--i~~l~~~~qiI~LSATl~n--~~~~~~~l~~~~~~~~~i~~-~~rpvpl~~~~~~~~~~~~~~ 357 (1174)
+++++ |++.+..+ +....+.+++++||||++. .+++...++.. .+.++.. ..|| .+.+.+....
T Consensus 593 VSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~--~~~vfr~Sf~Rp-NL~y~Vv~k~------ 663 (1195)
T PLN03137 593 VSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLV--NCVVFRQSFNRP-NLWYSVVPKT------ 663 (1195)
T ss_pred hhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCC--CcEEeecccCcc-ceEEEEeccc------
Confidence 99875 77777664 3333457899999999874 24566665421 1222222 2222 1111110000
Q ss_pred cccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHH
Q 001047 358 DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437 (1174)
Q Consensus 358 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 437 (1174)
.. ....+...+..
T Consensus 664 --------kk---------------------------------------------------------~le~L~~~I~~-- 676 (1195)
T PLN03137 664 --------KK---------------------------------------------------------CLEDIDKFIKE-- 676 (1195)
T ss_pred --------hh---------------------------------------------------------HHHHHHHHHHh--
Confidence 00 00011111111
Q ss_pred hCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHH
Q 001047 438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 517 (1174)
Q Consensus 438 ~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v 517 (1174)
.....++||||.+++.|+.++..|...|+ .+.+|||||++.+|..+
T Consensus 677 ~~~~esgIIYC~SRke~E~LAe~L~~~Gi----------------------------------ka~~YHAGLs~eeR~~v 722 (1195)
T PLN03137 677 NHFDECGIIYCLSRMDCEKVAERLQEFGH----------------------------------KAAFYHGSMDPAQRAFV 722 (1195)
T ss_pred cccCCCceeEeCchhHHHHHHHHHHHCCC----------------------------------CeeeeeCCCCHHHHHHH
Confidence 11235789999999999999999987776 68999999999999999
Q ss_pred HHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHH
Q 001047 518 EELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEE 597 (1174)
Q Consensus 518 ~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~ 597 (1174)
++.|..|.++|||||+++++|||+|+|++||+ ++.|.|+..|+||+|||||.| ..|.|+++++..+ ...
T Consensus 723 qe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH--------ydlPkSiEsYyQriGRAGRDG--~~g~cILlys~~D-~~~ 791 (1195)
T PLN03137 723 QKQWSKDEINIICATVAFGMGINKPDVRFVIH--------HSLPKSIEGYHQECGRAGRDG--QRSSCVLYYSYSD-YIR 791 (1195)
T ss_pred HHHHhcCCCcEEEEechhhcCCCccCCcEEEE--------cCCCCCHHHHHhhhcccCCCC--CCceEEEEecHHH-HHH
Confidence 99999999999999999999999999999999 999999999999999999999 7899999997643 333
Q ss_pred HHHHh
Q 001047 598 CCKLL 602 (1174)
Q Consensus 598 ~~~~~ 602 (1174)
+..++
T Consensus 792 ~~~lI 796 (1195)
T PLN03137 792 VKHMI 796 (1195)
T ss_pred HHHHH
Confidence 34444
No 33
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-41 Score=351.57 Aligned_cols=334 Identities=17% Similarity=0.201 Sum_probs=259.5
Q ss_pred HHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEcccHH
Q 001047 137 NEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPLKA 213 (1174)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~Ptra 213 (1174)
..|...++....+..+-..+.-+|+.+|+.||+.+++|+||+++|..|+|||..|.+.+++.+.- ...+++++|||+
T Consensus 27 ~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRE 106 (400)
T KOG0328|consen 27 PTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRE 106 (400)
T ss_pred cchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHH
Confidence 34444444433333333333346999999999999999999999999999999998888877653 357999999999
Q ss_pred HHHHHHHHHHHHhCC--CeEEEEeCCCCC-------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc
Q 001047 214 LSNQKFREFRETFGD--NNVGLLTGDSAI-------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 214 La~Q~~~~l~~~~g~--~~v~lltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~ 284 (1174)
|+.|+.+.+...-+. +.+..+.|+.++ +-+.+++.+||+++.+|+.+ +......+.++|+|||+.
T Consensus 107 La~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr------~~L~tr~vkmlVLDEaDe 180 (400)
T KOG0328|consen 107 LAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR------RSLRTRAVKMLVLDEADE 180 (400)
T ss_pred HHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh------ccccccceeEEEeccHHH
Confidence 999999999885433 345556666553 34789999999999999987 455677899999999999
Q ss_pred cccCCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeeccccccccccccccccc
Q 001047 285 LSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM 364 (1174)
Q Consensus 285 l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~ 364 (1174)
|++.+|+..+..+.+++|++.|++++|||+| .++.+.... +.+.|+..++..... .
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp--~eilemt~k-----------fmtdpvrilvkrdel-----------t 236 (400)
T KOG0328|consen 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATLP--HEILEMTEK-----------FMTDPVRILVKRDEL-----------T 236 (400)
T ss_pred HHHhhHHHHHHHHHHhCCCCceEEEEeccCc--HHHHHHHHH-----------hcCCceeEEEecCCC-----------c
Confidence 9999999999999999999999999999997 333333322 334455444332110 0
Q ss_pred chhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhC-CCCC
Q 001047 365 NRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR-DMLP 443 (1174)
Q Consensus 365 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~ 443 (1174)
.+.+.+.|+.. ...++..++|..+... ...+
T Consensus 237 lEgIKqf~v~v------------------------------------------------e~EewKfdtLcdLYd~LtItQ 268 (400)
T KOG0328|consen 237 LEGIKQFFVAV------------------------------------------------EKEEWKFDTLCDLYDTLTITQ 268 (400)
T ss_pred hhhhhhheeee------------------------------------------------chhhhhHhHHHHHhhhhehhe
Confidence 01111111100 1122345566665543 4568
Q ss_pred eEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhc
Q 001047 444 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR 523 (1174)
Q Consensus 444 ~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~ 523 (1174)
++|||++++.++.+.+.++..++ .|...||.|.+++|+.+...|+.
T Consensus 269 avIFcnTk~kVdwLtekm~~~nf----------------------------------tVssmHGDm~qkERd~im~dFRs 314 (400)
T KOG0328|consen 269 AVIFCNTKRKVDWLTEKMREANF----------------------------------TVSSMHGDMEQKERDKIMNDFRS 314 (400)
T ss_pred EEEEecccchhhHHHHHHHhhCc----------------------------------eeeeccCCcchhHHHHHHHHhhc
Confidence 99999999999999999986665 68889999999999999999999
Q ss_pred CCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 524 GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 524 G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
|.-+||++|++.++|+|+|.+++||+ |+.|.....|+||+||.||.| ..|.+|-|....
T Consensus 315 g~SrvLitTDVwaRGiDv~qVslviN--------YDLP~nre~YIHRIGRSGRFG--RkGvainFVk~~ 373 (400)
T KOG0328|consen 315 GKSRVLITTDVWARGIDVQQVSLVIN--------YDLPNNRELYIHRIGRSGRFG--RKGVAINFVKSD 373 (400)
T ss_pred CCceEEEEechhhccCCcceeEEEEe--------cCCCccHHHHhhhhccccccC--CcceEEEEecHH
Confidence 99999999999999999999999999 999999999999999999999 899999887653
No 34
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-41 Score=374.09 Aligned_cols=388 Identities=19% Similarity=0.196 Sum_probs=265.0
Q ss_pred HHHHhccCCcCChHHHhhcCCCC-CCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh---------cCCeEE
Q 001047 137 NEVKEFGNEMIDVDELASIYDFR-IDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---------NQRRIF 206 (1174)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~---------~g~rvl 206 (1174)
..|..+|+.+.....+.....+. ||.+|.++||.+++|+|++|.++||||||++|++|+++.+. .|.-+|
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~AL 215 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYAL 215 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEE
Confidence 45678888888888888887765 99999999999999999999999999999999999999885 366899
Q ss_pred EEcccHHHHHHHHHHHHHHhCCC---eEEEEeCCCC-C------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeE
Q 001047 207 YTTPLKALSNQKFREFRETFGDN---NVGLLTGDSA-I------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276 (1174)
Q Consensus 207 vl~PtraLa~Q~~~~l~~~~g~~---~v~lltGd~~-~------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~l 276 (1174)
|++|||+||.|+|+.+.++.... .-|.+.|+.. . ..+..|+|+|||+|.++|.++. ...+.++.|
T Consensus 216 VivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~-----~i~~s~LRw 290 (708)
T KOG0348|consen 216 VIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTK-----SIKFSRLRW 290 (708)
T ss_pred EEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccc-----hheeeeeeE
Confidence 99999999999999999976543 3344445443 2 3578999999999999999874 345678999
Q ss_pred EEEccccccccCCcHHHHHHHHHHC-------------CCCccEEEEccccCC-hHHHHHHHhcccCceeeecCCCCc--
Q 001047 277 IVLDEVHYLSDISRGTVWEEIIIYC-------------PKEVQIICLSATVAN-ADELAGWIGQIHGKTELITSSRRP-- 340 (1174)
Q Consensus 277 VIiDEaH~l~d~~~g~~~e~ii~~l-------------~~~~qiI~LSATl~n-~~~~~~~l~~~~~~~~~i~~~~rp-- 340 (1174)
||+||+|++.|.+|+..+..|+..+ |...|-++||||+.+ ...+++.- -.....|..+..-
T Consensus 291 lVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~s---LkDpv~I~ld~s~~~ 367 (708)
T KOG0348|consen 291 LVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLS---LKDPVYISLDKSHSQ 367 (708)
T ss_pred EEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhcc---ccCceeeeccchhhh
Confidence 9999999999999999999988765 334788999999963 23333221 1111112111100
Q ss_pred -cccEEeecccccccccccc-cccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhh
Q 001047 341 -VPLTWYFSTKTALLPLLDE-KGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSI 418 (1174)
Q Consensus 341 -vpl~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 418 (1174)
.|-..-+.... ..+.-+. ....++..+.+.|.... .+.
T Consensus 368 ~~p~~~a~~ev~-~~~~~~~l~~~~iPeqL~qry~vVP-------------------------------------pKL-- 407 (708)
T KOG0348|consen 368 LNPKDKAVQEVD-DGPAGDKLDSFAIPEQLLQRYTVVP-------------------------------------PKL-- 407 (708)
T ss_pred cCcchhhhhhcC-CcccccccccccCcHHhhhceEecC-------------------------------------Cch--
Confidence 00000000000 0000000 00011122211111000 000
Q ss_pred hhhhhcCchhHHHHHHHHH-hCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhh
Q 001047 419 NAIRRSQVPQVIDTLWHLR-SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG 497 (1174)
Q Consensus 419 ~~~~~~~~~~~~~~l~~l~-~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~ 497 (1174)
..-.+..+|.... .....++|||+.+...++.-+..+...-+.. . +-....|+. +.+..+
T Consensus 408 ------RLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~-~----------e~~s~~~~s--~g~~~l 468 (708)
T KOG0348|consen 408 ------RLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSH-L----------EGSSGAPDS--EGLPPL 468 (708)
T ss_pred ------hHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcc-c----------ccccCCccc--CCChhh
Confidence 0001122222222 2344589999999999888777775322210 0 000011111 112222
Q ss_pred h-ccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCC
Q 001047 498 L-LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGR 576 (1174)
Q Consensus 498 L-~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR 576 (1174)
+ ...+.-+||+|++++|..++..|....--||+|||++++|+|+|.|++||. |+.|.++.+|+||+||++|
T Consensus 469 ~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd~P~s~adylHRvGRTAR 540 (708)
T KOG0348|consen 469 FMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ--------YDPPFSTADYLHRVGRTAR 540 (708)
T ss_pred hhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE--------eCCCCCHHHHHHHhhhhhh
Confidence 2 235888999999999999999999988889999999999999999999999 9999999999999999999
Q ss_pred CCCCCccEEEEEeCCCCCHHHHHHHhh
Q 001047 577 RGIDNRGHVVLVQTPYEGAEECCKLLF 603 (1174)
Q Consensus 577 ~G~d~~G~~ill~~~~~~~~~~~~~~~ 603 (1174)
.| ..|.+++|..|.+ .+|.+++.
T Consensus 541 aG--~kG~alLfL~P~E--aey~~~l~ 563 (708)
T KOG0348|consen 541 AG--EKGEALLFLLPSE--AEYVNYLK 563 (708)
T ss_pred cc--CCCceEEEecccH--HHHHHHHH
Confidence 99 8999999998876 33555544
No 35
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.7e-41 Score=364.08 Aligned_cols=441 Identities=20% Similarity=0.197 Sum_probs=314.8
Q ss_pred HHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh---------cCCeEEE
Q 001047 137 NEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---------NQRRIFY 207 (1174)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~---------~g~rvlv 207 (1174)
..|.+|++.+..+.++.+++.-.||-+|..|||.+++|+|+++.|.||||||.+|++|+++.+. .+..++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 5788899998899999999888999999999999999999999999999999999999998874 3558999
Q ss_pred EcccHHHHHHHHHHHHHHh---C-CCeEEEEeCCCC-------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeE
Q 001047 208 TTPLKALSNQKFREFRETF---G-DNNVGLLTGDSA-------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276 (1174)
Q Consensus 208 l~PtraLa~Q~~~~l~~~~---g-~~~v~lltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~l 276 (1174)
++|||+|+.|+|..+.++. + .+++.-++.+.+ ....++|+|+||+.+..++..+. ...+..+.+
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~-----~~~~~~l~~ 173 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGV-----LEYLDSLSF 173 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhcc-----chhhhheee
Confidence 9999999999999988742 2 222222332221 23579999999999999998632 156789999
Q ss_pred EEEccccccccCCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHHHHhcccCceeeec-CCCCc--cccEEeeccccc
Q 001047 277 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTELIT-SSRRP--VPLTWYFSTKTA 352 (1174)
Q Consensus 277 VIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~~l~~~~~~~~~i~-~~~rp--vpl~~~~~~~~~ 352 (1174)
+|+||||.++..++...+..+..++|+..|.++||||+++ ...+...+. ++++.+-- ...-| ..+++|.....
T Consensus 174 LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l--~nPviLkl~e~el~~~dqL~Qy~v~cs- 250 (569)
T KOG0346|consen 174 LVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFL--HNPVILKLTEGELPNPDQLTQYQVKCS- 250 (569)
T ss_pred EEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhc--cCCeEEEeccccCCCcccceEEEEEec-
Confidence 9999999999888889999999999999999999999973 344444433 22222111 11111 11222211000
Q ss_pred ccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHH
Q 001047 353 LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 432 (1174)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 432 (1174)
-..++ ..+..+
T Consensus 251 -----------e~DKf----------------------------------------------------------lllyal 261 (569)
T KOG0346|consen 251 -----------EEDKF----------------------------------------------------------LLLYAL 261 (569)
T ss_pred -----------cchhH----------------------------------------------------------HHHHHH
Confidence 00000 001111
Q ss_pred HHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHH
Q 001047 433 LWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPI 512 (1174)
Q Consensus 433 l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~ 512 (1174)
++ |. --.++.|||+|+...|.++--+|...|+ ...++.|.|+..
T Consensus 262 lK-L~-LI~gKsliFVNtIdr~YrLkLfLeqFGi----------------------------------ksciLNseLP~N 305 (569)
T KOG0346|consen 262 LK-LR-LIRGKSLIFVNTIDRCYRLKLFLEQFGI----------------------------------KSCILNSELPAN 305 (569)
T ss_pred HH-HH-HhcCceEEEEechhhhHHHHHHHHHhCc----------------------------------Hhhhhccccccc
Confidence 11 11 1236899999999999999988887776 456788999999
Q ss_pred HHHHHHHHHhcCCceEEEech-----------------------------------hhhhcCCcCCceEEEecccccCCC
Q 001047 513 WKSFIEELFQRGLVKVVFATE-----------------------------------TLAAGINMPARTAVLSSLSKRTAS 557 (1174)
Q Consensus 513 ~R~~v~~~F~~G~ikVLVAT~-----------------------------------tla~GIDiP~v~vVI~~~~k~~~~ 557 (1174)
-|.-|++.|..|.++|||||| -.++|||+..|..||+
T Consensus 306 SR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlN-------- 377 (569)
T KOG0346|consen 306 SRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLN-------- 377 (569)
T ss_pred chhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeee--------
Confidence 999999999999999999999 2578999999999999
Q ss_pred CccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhhCCCcceeeeeccchhHHHHHhhhchhccccCchh
Q 001047 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESD 637 (1174)
Q Consensus 558 ~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~~~~~pl~S~f~~~y~~vlnll~~~~~~~~~~~~~ 637 (1174)
++.|.++..|+||+||++|.| ..|.++.|+.|.+.... .++-..+++..- ..
T Consensus 378 FD~P~t~~sYIHRvGRTaRg~--n~GtalSfv~P~e~~g~--------------------~~le~~~~d~~~------~~ 429 (569)
T KOG0346|consen 378 FDFPETVTSYIHRVGRTARGN--NKGTALSFVSPKEEFGK--------------------ESLESILKDENR------QE 429 (569)
T ss_pred cCCCCchHHHHHhccccccCC--CCCceEEEecchHHhhh--------------------hHHHHHHhhHHh------hc
Confidence 999999999999999999999 89999999888653210 111111111000 00
Q ss_pred HH-HHHHhCCCHHHHHHHHHhhHHhhhccchhhHhHHHHHHHHHHHHHHHhhhchhhhhhHHhhhcCHHHHHHHHHHHHH
Q 001047 638 DM-KALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEE 716 (1174)
Q Consensus 638 ~~-~~~~~~~~~~~~~~ll~~sf~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 716 (1174)
.. -+..|....++++.|..+.-..+.+-..+...++++.++ +.++....+|+..
T Consensus 430 ~~qilqPY~f~~eevesfryR~eD~~ravTkvAvreaR~kEi-------------------------kqEll~SeKLK~~ 484 (569)
T KOG0346|consen 430 GRQILQPYQFRMEEVESFRYRAEDALRAVTKVAVREARLKEI-------------------------KQELLNSEKLKAF 484 (569)
T ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHhHHHHHHH
Confidence 00 000233445566665555544554444444444555544 2355566788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcc
Q 001047 717 LKAEKRFRTELRRRMELKRFSALKDILKDFENGHLP 752 (1174)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 752 (1174)
+++..|.+.-||+.... +....+++|+.+|.|.+|
T Consensus 485 FeeNprdl~lLrhDkpl-~~~~~qphL~dvpeYlvp 519 (569)
T KOG0346|consen 485 FEENPRDLQLLRHDKPL-RLAIVQPHLKDVPEYLVP 519 (569)
T ss_pred HhcChHHHHHhhcCCcc-cccccchhhccCchhhCC
Confidence 99999999988887433 345678899999988875
No 36
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-42 Score=358.01 Aligned_cols=355 Identities=18% Similarity=0.224 Sum_probs=267.6
Q ss_pred HHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcC---CeEEEEcccHH
Q 001047 137 NEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ---RRIFYTTPLKA 213 (1174)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g---~rvlvl~Ptra 213 (1174)
.+|.+|.+.+..+..+.+.+.-.|+|+|.++||.++.|+|+++.|..|+|||.+|.+|+++.+... -.+++++|||+
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtre 164 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRE 164 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecch
Confidence 345555555555555555555679999999999999999999999999999999999999998754 37899999999
Q ss_pred HHHHHHHHHHHH---hCCCeEEEEeCCCCC-------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccc
Q 001047 214 LSNQKFREFRET---FGDNNVGLLTGDSAI-------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283 (1174)
Q Consensus 214 La~Q~~~~l~~~---~g~~~v~lltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH 283 (1174)
||-|..+...+. .| +.|-..+|+++. +...+++|+||+++.++..+ +-..+++...+|+|||+
T Consensus 165 lALQtSqvc~~lskh~~-i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K------gVa~ls~c~~lV~DEAD 237 (459)
T KOG0326|consen 165 LALQTSQVCKELSKHLG-IKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK------GVADLSDCVILVMDEAD 237 (459)
T ss_pred hhHHHHHHHHHHhcccC-eEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc------ccccchhceEEEechhh
Confidence 999877666553 33 567778888764 35789999999999999887 45568899999999999
Q ss_pred ccccCCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccc
Q 001047 284 YLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKH 363 (1174)
Q Consensus 284 ~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~ 363 (1174)
.+++..|+..++.++..+|++.|++++|||.|. .+..|+..... -|....+...-.
T Consensus 238 KlLs~~F~~~~e~li~~lP~~rQillySATFP~--tVk~Fm~~~l~-----------kPy~INLM~eLt----------- 293 (459)
T KOG0326|consen 238 KLLSVDFQPIVEKLISFLPKERQILLYSATFPL--TVKGFMDRHLK-----------KPYEINLMEELT----------- 293 (459)
T ss_pred hhhchhhhhHHHHHHHhCCccceeeEEecccch--hHHHHHHHhcc-----------Ccceeehhhhhh-----------
Confidence 999999999999999999999999999999984 23333332111 111111100000
Q ss_pred cchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHH-hCCCC
Q 001047 364 MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR-SRDML 442 (1174)
Q Consensus 364 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~ 442 (1174)
...+.+.|. |.. ....+..+..|. +....
T Consensus 294 -l~GvtQyYa---------fV~----------------------------------------e~qKvhCLntLfskLqIN 323 (459)
T KOG0326|consen 294 -LKGVTQYYA---------FVE----------------------------------------ERQKVHCLNTLFSKLQIN 323 (459)
T ss_pred -hcchhhhee---------eec----------------------------------------hhhhhhhHHHHHHHhccc
Confidence 000000000 000 001112222222 22446
Q ss_pred CeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHh
Q 001047 443 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQ 522 (1174)
Q Consensus 443 ~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~ 522 (1174)
++||||+|...++.+|+.+...|+ .+.+.|+.|.++.|..|+..|+
T Consensus 324 QsIIFCNS~~rVELLAkKITelGy----------------------------------scyyiHakM~Q~hRNrVFHdFr 369 (459)
T KOG0326|consen 324 QSIIFCNSTNRVELLAKKITELGY----------------------------------SCYYIHAKMAQEHRNRVFHDFR 369 (459)
T ss_pred ceEEEeccchHhHHHHHHHHhccc----------------------------------hhhHHHHHHHHhhhhhhhhhhh
Confidence 899999999999999999988776 5778999999999999999999
Q ss_pred cCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC--CCHHHHHH
Q 001047 523 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY--EGAEECCK 600 (1174)
Q Consensus 523 ~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~--~~~~~~~~ 600 (1174)
+|.++.||||+.+.+|||++++++||+ ++.|.+++.|+||+||+||.| ..|.+|-+.+-. .+......
T Consensus 370 ~G~crnLVctDL~TRGIDiqavNvVIN--------FDfpk~aEtYLHRIGRsGRFG--hlGlAInLityedrf~L~~IE~ 439 (459)
T KOG0326|consen 370 NGKCRNLVCTDLFTRGIDIQAVNVVIN--------FDFPKNAETYLHRIGRSGRFG--HLGLAINLITYEDRFNLYRIEQ 439 (459)
T ss_pred ccccceeeehhhhhcccccceeeEEEe--------cCCCCCHHHHHHHccCCccCC--CcceEEEEEehhhhhhHHHHHH
Confidence 999999999999999999999999999 999999999999999999999 899999555432 22333444
Q ss_pred HhhCCCcceeeeeccc
Q 001047 601 LLFAGVEPLVSQFTAS 616 (1174)
Q Consensus 601 ~~~~~~~pl~S~f~~~ 616 (1174)
-+-.+..|+-+.+..+
T Consensus 440 eLGtEI~pip~~iDk~ 455 (459)
T KOG0326|consen 440 ELGTEIKPIPSNIDKS 455 (459)
T ss_pred HhccccccCCCcCCcc
Confidence 5666677776665443
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.4e-40 Score=394.91 Aligned_cols=321 Identities=21% Similarity=0.302 Sum_probs=236.4
Q ss_pred HhhcCCC-CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCe
Q 001047 152 LASIYDF-RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNN 230 (1174)
Q Consensus 152 l~~~~~~-~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~ 230 (1174)
|+..|+| .|+|+|.++|+.+++|+|+++++|||+|||++|++|++. .++.+||++|+++|+.|++..+.. +| ..
T Consensus 3 l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~~-~g-i~ 77 (470)
T TIGR00614 3 LKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---SDGITLVISPLISLMEDQVLQLKA-SG-IP 77 (470)
T ss_pred hHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---cCCcEEEEecHHHHHHHHHHHHHH-cC-Cc
Confidence 4556665 499999999999999999999999999999999999875 367899999999999999999987 44 45
Q ss_pred EEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCC--cHHHHHHH
Q 001047 231 VGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDIS--RGTVWEEI 297 (1174)
Q Consensus 231 v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~--~g~~~e~i 297 (1174)
+..++|+... +...+|+++||+.+...... +.......++++|||||||++++++ |...+..+
T Consensus 78 ~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~----~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l 153 (470)
T TIGR00614 78 ATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRL----LQTLEERKGITLIAVDEAHCISQWGHDFRPDYKAL 153 (470)
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhH----HHHHHhcCCcCEEEEeCCcccCccccccHHHHHHH
Confidence 7777776542 24589999999987532100 0001135689999999999999764 55555544
Q ss_pred --HHHCCCCccEEEEccccCCh--HHHHHHHhcccCceeeecCC-CCccccEEeecccccccccccccccccchhhhhhh
Q 001047 298 --IIYCPKEVQIICLSATVANA--DELAGWIGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 372 (1174)
Q Consensus 298 --i~~l~~~~qiI~LSATl~n~--~~~~~~l~~~~~~~~~i~~~-~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 372 (1174)
+....+++++++||||+++. .++..+++... ..++... .|| .+.+.+.. .
T Consensus 154 ~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~--~~~~~~s~~r~-nl~~~v~~----------~------------ 208 (470)
T TIGR00614 154 GSLKQKFPNVPIMALTATASPSVREDILRQLNLKN--PQIFCTSFDRP-NLYYEVRR----------K------------ 208 (470)
T ss_pred HHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCC--CcEEeCCCCCC-CcEEEEEe----------C------------
Confidence 22333578999999999753 45555554321 1111111 111 01000000 0
Q ss_pred hhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHH-hCCCCCeEEEecCH
Q 001047 373 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR-SRDMLPAIWFIFNR 451 (1174)
Q Consensus 373 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~IVF~~sr 451 (1174)
......+++..+. ...+..+||||+|+
T Consensus 209 ----------------------------------------------------~~~~~~~l~~~l~~~~~~~~~IIF~~s~ 236 (470)
T TIGR00614 209 ----------------------------------------------------TPKILEDLLRFIRKEFKGKSGIIYCPSR 236 (470)
T ss_pred ----------------------------------------------------CccHHHHHHHHHHHhcCCCceEEEECcH
Confidence 0000111222222 23445679999999
Q ss_pred HHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEe
Q 001047 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 531 (1174)
Q Consensus 452 ~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVA 531 (1174)
+.|+.++..|...++ .+.++||+|++.+|..+++.|++|.++||||
T Consensus 237 ~~~e~la~~L~~~g~----------------------------------~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVa 282 (470)
T TIGR00614 237 KKSEQVTASLQNLGI----------------------------------AAGAYHAGLEISARDDVHHKFQRDEIQVVVA 282 (470)
T ss_pred HHHHHHHHHHHhcCC----------------------------------CeeEeeCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 999999999987665 6889999999999999999999999999999
Q ss_pred chhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhh
Q 001047 532 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 603 (1174)
Q Consensus 532 T~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~ 603 (1174)
|+++++|||+|++++||+ ++.|.|..+|+||+|||||.| ..|.|++++++.+ ...+..++.
T Consensus 283 T~~~~~GID~p~V~~VI~--------~~~P~s~~~y~Qr~GRaGR~G--~~~~~~~~~~~~d-~~~~~~~~~ 343 (470)
T TIGR00614 283 TVAFGMGINKPDVRFVIH--------YSLPKSMESYYQESGRAGRDG--LPSECHLFYAPAD-INRLRRLLM 343 (470)
T ss_pred echhhccCCcccceEEEE--------eCCCCCHHHHHhhhcCcCCCC--CCceEEEEechhH-HHHHHHHHh
Confidence 999999999999999999 899999999999999999999 7899999988754 333444443
No 38
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-41 Score=379.17 Aligned_cols=356 Identities=19% Similarity=0.193 Sum_probs=259.7
Q ss_pred HHHHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcC-CcEEEEccCCcchHHHHHHHHHHHHh-------------
Q 001047 135 LCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRG-SSVVVSAPTSSGKTLIAEAAAVATVA------------- 200 (1174)
Q Consensus 135 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g-~~vlv~apTGsGKTlv~~~~il~~l~------------- 200 (1174)
....+..|.++...+.++..++...|+++|...+|.+..| .|++..|.||||||++|.+||++.+.
T Consensus 179 DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 3567788888888899999998889999999999999999 69999999999999999999998442
Q ss_pred -cCCe--EEEEcccHHHHHHHHHHHHHH--hCCCeEEEEeCCCC-------CCCCCcEEEEcHHHHHHHHhcccccccCC
Q 001047 201 -NQRR--IFYTTPLKALSNQKFREFRET--FGDNNVGLLTGDSA-------INREAQILIMTTEILRNMLYQSVGMVSSE 268 (1174)
Q Consensus 201 -~g~r--vlvl~PtraLa~Q~~~~l~~~--~g~~~v~lltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~ 268 (1174)
++.+ .||++|||+||.|+...|... +..+.+..++|+.. ++..++|||+|||+|+.++.....+ -
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~---l 335 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTH---L 335 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhh---h
Confidence 2334 999999999999999999874 45578889999876 4568999999999999998875432 2
Q ss_pred CCCCceeEEEEccccccccCCcHHHHHHHHHHCC-----CCccEEEEccccCChHHHHHHHhcccCceeeecCCCCcccc
Q 001047 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP-----KEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPL 343 (1174)
Q Consensus 269 ~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~-----~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl 343 (1174)
..+.++.++|+||+++|.+.+....+..++..+. ...|.+.||||++-.. ..-+...+.. . ........++
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~--~~~~~~~~k~-~-~k~~~~~~ki 411 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVL--QQPLSSSRKK-K-DKEDELNAKI 411 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhh--cChhHHhhhc-c-chhhhhhHHH
Confidence 2467899999999999999888888888887764 4689999999986210 0000000000 0 0000000000
Q ss_pred EEe-----ecccccccccccccc-cccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhh
Q 001047 344 TWY-----FSTKTALLPLLDEKG-KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNS 417 (1174)
Q Consensus 344 ~~~-----~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 417 (1174)
+.. +.... .++|-.. ......+.-..+.+...+..
T Consensus 412 q~Lmk~ig~~~kp---kiiD~t~q~~ta~~l~Es~I~C~~~eKD------------------------------------ 452 (731)
T KOG0347|consen 412 QHLMKKIGFRGKP---KIIDLTPQSATASTLTESLIECPPLEKD------------------------------------ 452 (731)
T ss_pred HHHHHHhCccCCC---eeEecCcchhHHHHHHHHhhcCCccccc------------------------------------
Confidence 000 00000 0000000 00000000000000000000
Q ss_pred hhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhh
Q 001047 418 INAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG 497 (1174)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~ 497 (1174)
-.+..+..+-.+.+|||||+...+.+++-+|...++
T Consensus 453 -------------~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i------------------------------- 488 (731)
T KOG0347|consen 453 -------------LYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDI------------------------------- 488 (731)
T ss_pred -------------eeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCC-------------------------------
Confidence 001111223457999999999999999999987765
Q ss_pred hccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCC
Q 001047 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRR 577 (1174)
Q Consensus 498 L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~ 577 (1174)
.-..+|+.|.+.+|..-++.|++..--|||||+++|+|+|||.|.+||| |.+|.+...|+||.||++|+
T Consensus 489 ---~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH--------YqVPrtseiYVHRSGRTARA 557 (731)
T KOG0347|consen 489 ---PPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH--------YQVPRTSEIYVHRSGRTARA 557 (731)
T ss_pred ---CCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE--------eecCCccceeEecccccccc
Confidence 4556899999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCccEEEEEeCCCC
Q 001047 578 GIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 578 G~d~~G~~ill~~~~~ 593 (1174)
+ ..|..++++.|.+
T Consensus 558 ~--~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 558 N--SEGVSVMLCGPQE 571 (731)
T ss_pred c--CCCeEEEEeChHH
Confidence 9 8999999999976
No 39
>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [].; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 4A4Z_A 2XGJ_B 3L9O_A.
Probab=100.00 E-value=2.5e-41 Score=351.42 Aligned_cols=170 Identities=30% Similarity=0.440 Sum_probs=135.1
Q ss_pred ccCCCCccChhhHHHHhhcCCchHHHHHHHHhcccCCCCHHhHHHHHhhhccccccccccCCCCCCCCCcHHHHHHHHHH
Q 001047 997 LDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076 (1174)
Q Consensus 997 l~~~~~~vt~~Gr~a~~i~~~~eLllte~l~~g~~~~L~p~~laA~~s~~v~e~~~~r~~~~~~~~~~~~~~l~~~~~~l 1076 (1174)
||+++ +||+|||+||+||++||||+|||||+|+|++|+|+||||+|||||||+ |..+.. ..+.|+..+.++++++
T Consensus 1 id~~~-~vt~kGr~a~~I~~~~eLl~te~l~~g~f~~L~p~elAa~lS~~v~e~---~~~~~~-~~~~~~~~l~~~~~~l 75 (180)
T PF08148_consen 1 IDEDN-VVTLKGRVACEIYSEDELLLTELLFSGVFDDLDPAELAALLSCFVYEP---RREDEE-ERYPPSPRLREALEQL 75 (180)
T ss_dssp B-TTS--BSHHHHHHCC--SSTHHHHHHHHHCTCCCCS-HHHHHHHHHHHC--------SS----------HHHHHHHHH
T ss_pred CCCCC-ccCHHHHHHHHHcCcccHHHHHHHHcCCCCCCCHHHHHHHHHHhhccc---ccCccc-ccccccHHHHHHHHHH
Confidence 56665 999999999999999999999999999999999999999999999999 553322 2334455999999999
Q ss_pred HHHHHHHHHHHHHcCC----CCCCCCChhHHHHHHHHhCCCCHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCC--CCCC
Q 001047 1077 DEHRSSFLELQEKHGV----EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL--PDVD 1150 (1174)
Q Consensus 1077 ~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~v~~Wa~G~~~~~i~~~t~l~eGd~vR~~rrl~dll~Qi~~~--~~~~ 1150 (1174)
.+++++|..+|.+||+ ..+. ++|+||++||+||+|+||++||++|+++||||||++||++||||||+++ ...|
T Consensus 76 ~~~~~~l~~~~~~~~l~~~~~~~~-~~~~l~~~v~~Wa~G~~~~~i~~~t~l~EGdiVR~~rRl~dlLrql~~aa~~~g~ 154 (180)
T PF08148_consen 76 QEIAERLAKVEREHGLDEEEYVER-FDPGLMEVVYAWASGASFAEILEMTDLFEGDIVRWIRRLIDLLRQLANAAKIIGD 154 (180)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHC-STTTTHHHHHHHHCT--HHHHCCT-SS-HHHHHHHHHHHHHHHHHHHHHHHCCT-
T ss_pred HHHHHHHHHHHHHhCCCCcccccC-CCccHHHHHHHHHCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999 4444 4999999999999999999999999999999999999999999999999 4349
Q ss_pred hHHHHHHHHHHhccCCCCcccC
Q 001047 1151 QRLQKNAVDASNVMDRPPISEL 1172 (1174)
Q Consensus 1151 ~~l~~~~~~a~~~i~R~~v~~~ 1172 (1174)
|+|+++|++|+++|+||||+.-
T Consensus 155 ~~L~~~~~~a~~~i~R~iV~~~ 176 (180)
T PF08148_consen 155 PELAEKAREAIDLIRRDIVFAS 176 (180)
T ss_dssp HHHHHHHHHHHHHHSHCCCC--
T ss_pred HHHHHHHHHHHHhccCCccccc
Confidence 9999999999999999999853
No 40
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=8.4e-39 Score=411.32 Aligned_cols=364 Identities=23% Similarity=0.263 Sum_probs=237.8
Q ss_pred EEccCCcchHHHHHHHHHHHHhc-------------CCeEEEEcccHHHHHHHHHHHHHH----------hC----CCeE
Q 001047 179 VSAPTSSGKTLIAEAAAVATVAN-------------QRRIFYTTPLKALSNQKFREFRET----------FG----DNNV 231 (1174)
Q Consensus 179 v~apTGsGKTlv~~~~il~~l~~-------------g~rvlvl~PtraLa~Q~~~~l~~~----------~g----~~~v 231 (1174)
|+||||||||++|.+|++..+.. +.++|||+|+|+|++|+++.++.. +| +++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 58999999999999999887742 458999999999999999998641 22 3679
Q ss_pred EEEeCCCCCC-------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHH----HHH
Q 001047 232 GLLTGDSAIN-------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEI----IIY 300 (1174)
Q Consensus 232 ~lltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~i----i~~ 300 (1174)
+..+||++.+ ..++|+|+|||+|..+|.+. ....++++++|||||+|.|.+..||..++.. ...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk-----~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l 155 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR-----ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDAL 155 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh-----hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHh
Confidence 9999998643 36899999999999887641 2346899999999999999987788765544 445
Q ss_pred CCCCccEEEEccccCChHHHHHHHhcccCceeeecC-CCCccccEEeecccccccccccccccccchhhhhhhhhccccc
Q 001047 301 CPKEVQIICLSATVANADELAGWIGQIHGKTELITS-SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE 379 (1174)
Q Consensus 301 l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~-~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 379 (1174)
++.+.|+|+||||++|.+++++|++.. .++.++.. ..++.++..++.... ... .. .. ...
T Consensus 156 ~~~~~QrIgLSATI~n~eevA~~L~g~-~pv~Iv~~~~~r~~~l~v~vp~~d-~~~--------~~------~~---~~~ 216 (1490)
T PRK09751 156 LHTSAQRIGLSATVRSASDVAAFLGGD-RPVTVVNPPAMRHPQIRIVVPVAN-MDD--------VS------SV---ASG 216 (1490)
T ss_pred CCCCCeEEEEEeeCCCHHHHHHHhcCC-CCEEEECCCCCcccceEEEEecCc-hhh--------cc------cc---ccc
Confidence 577899999999999999999999752 23444443 234444443321100 000 00 00 000
Q ss_pred CCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHH-HHHHHHHhCCCCCeEEEecCHHHHHHHH
Q 001047 380 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI-DTLWHLRSRDMLPAIWFIFNRRGCDAAV 458 (1174)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~IVF~~sr~~~~~la 458 (1174)
.... . .... .....+.+. .++..+. ...++||||+||+.|+.++
T Consensus 217 ---~~~~-------------~-------------~~~r----~~~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La 261 (1490)
T PRK09751 217 ---TGED-------------S-------------HAGR----EGSIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLT 261 (1490)
T ss_pred ---cccc-------------c-------------chhh----hhhhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHH
Confidence 0000 0 0000 000011111 1222222 2468999999999999999
Q ss_pred HHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhc
Q 001047 459 QYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 538 (1174)
Q Consensus 459 ~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~G 538 (1174)
..|++..-...............+... .+.........-...+.+|||+|++++|..|++.|++|.+++||||+++++|
T Consensus 262 ~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELG 340 (1490)
T PRK09751 262 ARLNELYAARLQRSPSIAVDAAHFEST-SGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELG 340 (1490)
T ss_pred HHHHHhhhhhccccccccchhhhhhhc-cccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHcc
Confidence 999743210000000000000000000 0000000000001236799999999999999999999999999999999999
Q ss_pred CCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHH----HHHHhhCCCcceee
Q 001047 539 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEE----CCKLLFAGVEPLVS 611 (1174)
Q Consensus 539 IDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~----~~~~~~~~~~pl~S 611 (1174)
||||++++||+ ++.|.|+.+|+||+|||||. .+..+.++++..+..+.-+ ...++.+..+++..
T Consensus 341 IDIg~VDlVIq--------~gsP~sVas~LQRiGRAGR~-~gg~s~gli~p~~r~dlle~~~~ve~~l~g~iE~~~~ 408 (1490)
T PRK09751 341 IDMGAVDLVIQ--------VATPLSVASGLQRIGRAGHQ-VGGVSKGLFFPRTRRDLVDSAVIVECMFAGRLENLTP 408 (1490)
T ss_pred CCcccCCEEEE--------eCCCCCHHHHHHHhCCCCCC-CCCccEEEEEeCcHHHHHhhHHHHHHHhcCCCCccCC
Confidence 99999999999 88999999999999999997 3456677777665443332 33456666666543
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.9e-38 Score=391.77 Aligned_cols=312 Identities=20% Similarity=0.292 Sum_probs=232.8
Q ss_pred hHHHhhcCCCC-CCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC
Q 001047 149 VDELASIYDFR-IDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG 227 (1174)
Q Consensus 149 ~~~l~~~~~~~-~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g 227 (1174)
.+.++..|+|. |+|+|.++++.+++|+++++++|||+|||++|++|++.. ++.+||++|+++|+.|+...+.. +|
T Consensus 14 ~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---~g~tlVisPl~sL~~dqv~~l~~-~g 89 (607)
T PRK11057 14 KQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---DGLTLVVSPLISLMKDQVDQLLA-NG 89 (607)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---CCCEEEEecHHHHHHHHHHHHHH-cC
Confidence 44566777774 999999999999999999999999999999999998754 66899999999999999999987 34
Q ss_pred CCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCC--cHHHH
Q 001047 228 DNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDIS--RGTVW 294 (1174)
Q Consensus 228 ~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~--~g~~~ 294 (1174)
..+..+.+.... ....+++++||++|...... ......++++|||||||++.+++ |.+.+
T Consensus 90 -i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~------~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y 162 (607)
T PRK11057 90 -VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL------EHLAHWNPALLAVDEAHCISQWGHDFRPEY 162 (607)
T ss_pred -CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH------HHHhhCCCCEEEEeCccccccccCcccHHH
Confidence 445666554431 23578999999998632111 11223478999999999999764 55555
Q ss_pred HHH---HHHCCCCccEEEEccccCCh--HHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhh
Q 001047 295 EEI---IIYCPKEVQIICLSATVANA--DELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLS 369 (1174)
Q Consensus 295 e~i---i~~l~~~~qiI~LSATl~n~--~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~ 369 (1174)
..+ ...+ +++++++||||+++. .++..+++.. .+...+.+..||. +.+.+ +.
T Consensus 163 ~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~-~~~~~~~~~~r~n-l~~~v---------~~----------- 219 (607)
T PRK11057 163 AALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLN-DPLIQISSFDRPN-IRYTL---------VE----------- 219 (607)
T ss_pred HHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCC-CeEEEECCCCCCc-ceeee---------ee-----------
Confidence 443 3333 478999999999753 3444444321 1111111111110 00000 00
Q ss_pred hhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEec
Q 001047 370 LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449 (1174)
Q Consensus 370 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~ 449 (1174)
.......++..+......++||||+
T Consensus 220 -------------------------------------------------------~~~~~~~l~~~l~~~~~~~~IIFc~ 244 (607)
T PRK11057 220 -------------------------------------------------------KFKPLDQLMRYVQEQRGKSGIIYCN 244 (607)
T ss_pred -------------------------------------------------------ccchHHHHHHHHHhcCCCCEEEEEC
Confidence 0000111222333445678999999
Q ss_pred CHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEE
Q 001047 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVV 529 (1174)
Q Consensus 450 sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVL 529 (1174)
|++.|+.++..|...++ .+.++||+|++.+|..+++.|++|.++||
T Consensus 245 tr~~~e~la~~L~~~g~----------------------------------~v~~~Ha~l~~~~R~~i~~~F~~g~~~VL 290 (607)
T PRK11057 245 SRAKVEDTAARLQSRGI----------------------------------SAAAYHAGLDNDVRADVQEAFQRDDLQIV 290 (607)
T ss_pred cHHHHHHHHHHHHhCCC----------------------------------CEEEecCCCCHHHHHHHHHHHHCCCCCEE
Confidence 99999999999987665 68999999999999999999999999999
Q ss_pred EechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 530 FATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 530 VAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
|||+++++|||+|++++||+ ++.|.|..+|+||+|||||.| ..|.|++++++.+
T Consensus 291 VaT~a~~~GIDip~V~~VI~--------~d~P~s~~~y~Qr~GRaGR~G--~~~~~ill~~~~d 344 (607)
T PRK11057 291 VATVAFGMGINKPNVRFVVH--------FDIPRNIESYYQETGRAGRDG--LPAEAMLFYDPAD 344 (607)
T ss_pred EEechhhccCCCCCcCEEEE--------eCCCCCHHHHHHHhhhccCCC--CCceEEEEeCHHH
Confidence 99999999999999999999 899999999999999999999 6789999988743
No 42
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-39 Score=354.68 Aligned_cols=337 Identities=20% Similarity=0.248 Sum_probs=239.6
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHH---------cCCcEEEEccCCcchHHHHHHHHHHHHhcCC----eEEEEcccHHHHH
Q 001047 150 DELASIYDFRIDKFQRSSIEAFL---------RGSSVVVSAPTSSGKTLIAEAAAVATVANQR----RIFYTTPLKALSN 216 (1174)
Q Consensus 150 ~~l~~~~~~~~~~~Q~~ai~~ll---------~g~~vlv~apTGsGKTlv~~~~il~~l~~g~----rvlvl~PtraLa~ 216 (1174)
..+..++...+.|+|..+++.++ .++|++|.||||||||++|.+||++.+...+ |++|++||+.|+.
T Consensus 150 q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~ 229 (620)
T KOG0350|consen 150 QLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELAL 229 (620)
T ss_pred HHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHH
Confidence 45667777789999999999985 2589999999999999999999999987653 9999999999999
Q ss_pred HHHHHHHHHhCC--CeEEEEeCCCCCCC------------CCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccc
Q 001047 217 QKFREFRETFGD--NNVGLLTGDSAINR------------EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEV 282 (1174)
Q Consensus 217 Q~~~~l~~~~g~--~~v~lltGd~~~~~------------~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEa 282 (1174)
|+|..|.++..+ ..|+..+|..++.. ..+|+|+||++|.++|.+.. ...|.+++++|||||
T Consensus 230 QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k-----~f~Lk~LrfLVIDEA 304 (620)
T KOG0350|consen 230 QVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTK-----SFDLKHLRFLVIDEA 304 (620)
T ss_pred HHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCC-----CcchhhceEEEechH
Confidence 999999997654 46888888776431 34899999999999998753 557899999999999
Q ss_pred cccccCCcHHHHHHHHHHCCCC----------------------------------ccEEEEccccCC-hHHHHHHHhcc
Q 001047 283 HYLSDISRGTVWEEIIIYCPKE----------------------------------VQIICLSATVAN-ADELAGWIGQI 327 (1174)
Q Consensus 283 H~l~d~~~g~~~e~ii~~l~~~----------------------------------~qiI~LSATl~n-~~~~~~~l~~~ 327 (1174)
|+|++..|..++..++.++... .+.+.+|||++. +..+.++--.
T Consensus 305 DRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~- 383 (620)
T KOG0350|consen 305 DRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLH- 383 (620)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcC-
Confidence 9999988888877776654221 112333333321 1222211100
Q ss_pred cCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCccccc
Q 001047 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTS 407 (1174)
Q Consensus 328 ~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1174)
.|.-.++... ++ ....+...+...++.
T Consensus 384 -------------~Prl~~v~~~-----~~--~ryslp~~l~~~~vv--------------------------------- 410 (620)
T KOG0350|consen 384 -------------IPRLFHVSKP-----LI--GRYSLPSSLSHRLVV--------------------------------- 410 (620)
T ss_pred -------------CCceEEeecc-----cc--eeeecChhhhhceee---------------------------------
Confidence 0000000000 00 000000011000000
Q ss_pred ccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhh-hcCCCCHHhHHHHHHHHHHHHhhC
Q 001047 408 FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLE-DCNLLDECEMSEVELALKRFRILY 486 (1174)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~-~~~~~~~~e~~~i~~~~~~~~~~~ 486 (1174)
-...-..+.....+...+..++|+|++|...+.+++..|. ..+
T Consensus 411 ---------------~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~--------------------- 454 (620)
T KOG0350|consen 411 ---------------TEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFC--------------------- 454 (620)
T ss_pred ---------------cccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhc---------------------
Confidence 0000011223334445567899999999999999988886 211
Q ss_pred CccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHH
Q 001047 487 PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566 (1174)
Q Consensus 487 ~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~ 566 (1174)
.....+..+.|+++...|...++.|..|.++||||||+++||||+-+++.||+ |++|.+...
T Consensus 455 ----------~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN--------Yd~P~~~kt 516 (620)
T KOG0350|consen 455 ----------SDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN--------YDPPASDKT 516 (620)
T ss_pred ----------cccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee--------cCCCchhhH
Confidence 11124556789999999999999999999999999999999999999999999 999999999
Q ss_pred HHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHh
Q 001047 567 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 602 (1174)
Q Consensus 567 y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~ 602 (1174)
|+||+||+||+| ..|.||.+.+..+ ...+.+++
T Consensus 517 yVHR~GRTARAg--q~G~a~tll~~~~-~r~F~klL 549 (620)
T KOG0350|consen 517 YVHRAGRTARAG--QDGYAITLLDKHE-KRLFSKLL 549 (620)
T ss_pred HHHhhccccccc--CCceEEEeecccc-chHHHHHH
Confidence 999999999999 7899997776654 23344444
No 43
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-39 Score=366.00 Aligned_cols=320 Identities=20% Similarity=0.220 Sum_probs=243.7
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc-------------CCeEEEEcccHHHHHH
Q 001047 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN-------------QRRIFYTTPLKALSNQ 217 (1174)
Q Consensus 151 ~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~-------------g~rvlvl~PtraLa~Q 217 (1174)
.++...+..|+|+|+.+|+.+..|++++++|+||||||.+|++|++..+.. .++++|++|||+|+.|
T Consensus 88 ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Q 167 (482)
T KOG0335|consen 88 NIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQ 167 (482)
T ss_pred ccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhH
Confidence 345556668999999999999999999999999999999999999988753 2589999999999999
Q ss_pred HHHHHHHHhCC--CeEEEEeCCCC-------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccccc-
Q 001047 218 KFREFRETFGD--NNVGLLTGDSA-------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD- 287 (1174)
Q Consensus 218 ~~~~l~~~~g~--~~v~lltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d- 287 (1174)
+|.+.++..+. ...+...|+.. +..+++|+|+||++|.+++.. +...|+++.++|+|||++|.|
T Consensus 168 i~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~------g~i~l~~~k~~vLDEADrMlD~ 241 (482)
T KOG0335|consen 168 IYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER------GKISLDNCKFLVLDEADRMLDE 241 (482)
T ss_pred HHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc------ceeehhhCcEEEecchHHhhhh
Confidence 99999986443 34555666643 235899999999999999987 567789999999999999999
Q ss_pred CCcHHHHHHHHHHCCC----CccEEEEccccCC-hHHHHHHHhccc-CceeeecCCCCccccEEeecccccccccccccc
Q 001047 288 ISRGTVWEEIIIYCPK----EVQIICLSATVAN-ADELAGWIGQIH-GKTELITSSRRPVPLTWYFSTKTALLPLLDEKG 361 (1174)
Q Consensus 288 ~~~g~~~e~ii~~l~~----~~qiI~LSATl~n-~~~~~~~l~~~~-~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~ 361 (1174)
++|++.+..++.+... ..|.++||||.+. ...++..+.... --..+.........+.+.+.
T Consensus 242 mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~------------- 308 (482)
T KOG0335|consen 242 MGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKIL------------- 308 (482)
T ss_pred ccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEee-------------
Confidence 8999999999987743 7899999999973 222333222110 00000000000000110000
Q ss_pred cccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhC--
Q 001047 362 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR-- 439 (1174)
Q Consensus 362 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~-- 439 (1174)
+.++. .....+++++......
T Consensus 309 -~V~~~--------------------------------------------------------~kr~~Lldll~~~~~~~~ 331 (482)
T KOG0335|consen 309 -FVNEM--------------------------------------------------------EKRSKLLDLLNKDDGPPS 331 (482)
T ss_pred -eecch--------------------------------------------------------hhHHHHHHHhhcccCCcc
Confidence 00000 0011122222211100
Q ss_pred ----CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHH
Q 001047 440 ----DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKS 515 (1174)
Q Consensus 440 ----~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~ 515 (1174)
....++|||.+++.|..++.+|...++ ....+||.-++.+|.
T Consensus 332 ~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~----------------------------------~~~sIhg~~tq~er~ 377 (482)
T KOG0335|consen 332 DGEPKWEKTLVFVETKRGADELAAFLSSNGY----------------------------------PAKSIHGDRTQIERE 377 (482)
T ss_pred cCCcccceEEEEeeccchhhHHHHHHhcCCC----------------------------------CceeecchhhhhHHH
Confidence 112699999999999999999987776 466789999999999
Q ss_pred HHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeC
Q 001047 516 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 590 (1174)
Q Consensus 516 ~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~ 590 (1174)
..+..|+.|.+.|||||+++++|+|+|+|++||+ |+.|.+..+|+||+||+||.| ..|.++.|.+
T Consensus 378 ~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn--------yDmP~d~d~YvHRIGRTGR~G--n~G~atsf~n 442 (482)
T KOG0335|consen 378 QALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN--------YDMPADIDDYVHRIGRTGRVG--NGGRATSFFN 442 (482)
T ss_pred HHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE--------eecCcchhhHHHhccccccCC--CCceeEEEec
Confidence 9999999999999999999999999999999999 999999999999999999999 8899987776
No 44
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.3e-38 Score=384.66 Aligned_cols=331 Identities=24% Similarity=0.284 Sum_probs=259.3
Q ss_pred CChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcC--------CeEEEEcccHHHHHHH
Q 001047 147 IDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ--------RRIFYTTPLKALSNQK 218 (1174)
Q Consensus 147 ~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g--------~rvlvl~PtraLa~Q~ 218 (1174)
...+.|+.. ...|||.|.+||+.+.+|+|+||+||||||||+++.+|++..+... -.+|||+|.|||.+.+
T Consensus 11 ~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di 89 (814)
T COG1201 11 RVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDI 89 (814)
T ss_pred HHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHH
Confidence 344455666 5689999999999999999999999999999999999999887533 3899999999999999
Q ss_pred HHHHHHHhC--CCeEEEEeCCCCCC-------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCC
Q 001047 219 FREFRETFG--DNNVGLLTGDSAIN-------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDIS 289 (1174)
Q Consensus 219 ~~~l~~~~g--~~~v~lltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~ 289 (1174)
.+.+..... +..+.+-|||++.. ..++|+|+|||.|.-+|.... ....|.++.+||+||+|.+.+..
T Consensus 90 ~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~----~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 90 RRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPK----FRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHH----HHHHhcCCcEEEeehhhhhhccc
Confidence 999887432 25689999998743 468999999999998886531 24568899999999999999999
Q ss_pred cHHHHHHHHHH----CCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCc-cccEEeeccccccccccccccccc
Q 001047 290 RGTVWEEIIIY----CPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRP-VPLTWYFSTKTALLPLLDEKGKHM 364 (1174)
Q Consensus 290 ~g~~~e~ii~~----l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rp-vpl~~~~~~~~~~~~~~~~~~~~~ 364 (1174)
||..+.-.+.+ .+ +.|.||||||++++++++.|+.....+|.++...... ..+........
T Consensus 166 RG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~------------- 231 (814)
T COG1201 166 RGVQLALSLERLRELAG-DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVED------------- 231 (814)
T ss_pred cchhhhhhHHHHHhhCc-ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCc-------------
Confidence 99876555433 34 8999999999999999999999876667777654322 11111110000
Q ss_pred chhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCe
Q 001047 365 NRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444 (1174)
Q Consensus 365 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 444 (1174)
. . +. .......+..+..+.+... .+
T Consensus 232 ---~--~-----------~~--------------------------------------~~~~~~~~~~i~~~v~~~~-tt 256 (814)
T COG1201 232 ---L--I-----------YD--------------------------------------EELWAALYERIAELVKKHR-TT 256 (814)
T ss_pred ---c--c-----------cc--------------------------------------cchhHHHHHHHHHHHhhcC-cE
Confidence 0 0 00 0112234455566655554 89
Q ss_pred EEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcC
Q 001047 445 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRG 524 (1174)
Q Consensus 445 IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G 524 (1174)
|||+|||..++.++..|...+. ..+..|||+++.+.|..+|+.|++|
T Consensus 257 LIF~NTR~~aE~l~~~L~~~~~---------------------------------~~i~~HHgSlSre~R~~vE~~lk~G 303 (814)
T COG1201 257 LIFTNTRSGAERLAFRLKKLGP---------------------------------DIIEVHHGSLSRELRLEVEERLKEG 303 (814)
T ss_pred EEEEeChHHHHHHHHHHHHhcC---------------------------------CceeeecccccHHHHHHHHHHHhcC
Confidence 9999999999999999985542 2699999999999999999999999
Q ss_pred CceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 525 LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 525 ~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
.++++|||++++.|||+.+++.||+ +..|.+++.++||+||+|++. +.....++++...+
T Consensus 304 ~lravV~TSSLELGIDiG~vdlVIq--------~~SP~sV~r~lQRiGRsgHr~-~~~Skg~ii~~~r~ 363 (814)
T COG1201 304 ELKAVVATSSLELGIDIGDIDLVIQ--------LGSPKSVNRFLQRIGRAGHRL-GEVSKGIIIAEDRD 363 (814)
T ss_pred CceEEEEccchhhccccCCceEEEE--------eCCcHHHHHHhHhcccccccc-CCcccEEEEecCHH
Confidence 9999999999999999999999999 889999999999999999864 24444555555433
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=8.2e-38 Score=387.47 Aligned_cols=311 Identities=23% Similarity=0.309 Sum_probs=235.1
Q ss_pred HHHhhcCCCC-CCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCC
Q 001047 150 DELASIYDFR-IDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGD 228 (1174)
Q Consensus 150 ~~l~~~~~~~-~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~ 228 (1174)
+.+++.|+|. |+|+|.++|+.+++|+|+++++|||+|||++|++|++. .++.++|++|+++|+.|++..+.. +|
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---~~g~~lVisPl~sL~~dq~~~l~~-~g- 77 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---LKGLTVVISPLISLMKDQVDQLRA-AG- 77 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHH-cC-
Confidence 3466667765 99999999999999999999999999999999999874 367899999999999999999988 44
Q ss_pred CeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccC--CcHHHHH
Q 001047 229 NNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI--SRGTVWE 295 (1174)
Q Consensus 229 ~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~--~~g~~~e 295 (1174)
..+..++++... +...+|+++||++|.+.... ......++++|||||||+++++ .|.+.+.
T Consensus 78 i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~------~~l~~~~l~~iViDEaH~i~~~g~~frp~y~ 151 (591)
T TIGR01389 78 VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL------NMLQRIPIALVAVDEAHCVSQWGHDFRPEYQ 151 (591)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH------HHHhcCCCCEEEEeCCcccccccCccHHHHH
Confidence 557777776542 24678999999998643322 1223458999999999999975 4666665
Q ss_pred HHH---HHCCCCccEEEEccccCCh--HHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhh
Q 001047 296 EII---IYCPKEVQIICLSATVANA--DELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 370 (1174)
Q Consensus 296 ~ii---~~l~~~~qiI~LSATl~n~--~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 370 (1174)
.+. ..++ +.++++||||++.. .++..|++... +..++.+..||. +.+.+....
T Consensus 152 ~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~-~~~~~~~~~r~n-l~~~v~~~~------------------- 209 (591)
T TIGR01389 152 RLGSLAERFP-QVPRIALTATADAETRQDIRELLRLAD-ANEFITSFDRPN-LRFSVVKKN------------------- 209 (591)
T ss_pred HHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCC-CCeEecCCCCCC-cEEEEEeCC-------------------
Confidence 553 3344 45699999998643 45666665321 112222222221 110000000
Q ss_pred hhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecC
Q 001047 371 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450 (1174)
Q Consensus 371 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~s 450 (1174)
.....+ +..+......++||||+|
T Consensus 210 -----------------------------------------------------~~~~~l---~~~l~~~~~~~~IIf~~s 233 (591)
T TIGR01389 210 -----------------------------------------------------NKQKFL---LDYLKKHRGQSGIIYASS 233 (591)
T ss_pred -----------------------------------------------------CHHHHH---HHHHHhcCCCCEEEEECc
Confidence 000111 122223345689999999
Q ss_pred HHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEE
Q 001047 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVF 530 (1174)
Q Consensus 451 r~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLV 530 (1174)
++.|+.+++.|...++ .+++|||||++.+|..+++.|.+|.++|||
T Consensus 234 r~~~e~la~~L~~~g~----------------------------------~~~~~H~~l~~~~R~~i~~~F~~g~~~vlV 279 (591)
T TIGR01389 234 RKKVEELAERLESQGI----------------------------------SALAYHAGLSNKVRAENQEDFLYDDVKVMV 279 (591)
T ss_pred HHHHHHHHHHHHhCCC----------------------------------CEEEEECCCCHHHHHHHHHHHHcCCCcEEE
Confidence 9999999999976654 688999999999999999999999999999
Q ss_pred echhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 531 ATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 531 AT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
||+++++|||+|++++||+ ++.|.|..+|+||+|||||.| ..|.|++++++.+
T Consensus 280 aT~a~~~GID~p~v~~VI~--------~~~p~s~~~y~Q~~GRaGR~G--~~~~~il~~~~~d 332 (591)
T TIGR01389 280 ATNAFGMGIDKPNVRFVIH--------YDMPGNLESYYQEAGRAGRDG--LPAEAILLYSPAD 332 (591)
T ss_pred EechhhccCcCCCCCEEEE--------cCCCCCHHHHhhhhccccCCC--CCceEEEecCHHH
Confidence 9999999999999999999 899999999999999999999 7888888887643
No 46
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.9e-39 Score=345.73 Aligned_cols=335 Identities=19% Similarity=0.213 Sum_probs=261.2
Q ss_pred HHHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh-----------cCCe
Q 001047 136 CNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-----------NQRR 204 (1174)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-----------~g~r 204 (1174)
+.+|.+...+...++.+++.....|||+|.+.+|.++.|+|.|..|-||||||++|.+|++.... .|+.
T Consensus 169 IksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~ 248 (610)
T KOG0341|consen 169 IKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPY 248 (610)
T ss_pred hhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCe
Confidence 45666667777778888888888999999999999999999999999999999999999765432 4778
Q ss_pred EEEEcccHHHHHHHHHHHHHHh--------CCCeEEEEeCCCCC-------CCCCcEEEEcHHHHHHHHhcccccccCCC
Q 001047 205 IFYTTPLKALSNQKFREFRETF--------GDNNVGLLTGDSAI-------NREAQILIMTTEILRNMLYQSVGMVSSES 269 (1174)
Q Consensus 205 vlvl~PtraLa~Q~~~~l~~~~--------g~~~v~lltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~ 269 (1174)
.||+||.|+||.|.+.-+..++ +..+.+++.|+..+ ..+.+|+|+||++|.+||.+ ...
T Consensus 249 gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K------K~~ 322 (610)
T KOG0341|consen 249 GLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK------KIM 322 (610)
T ss_pred eEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH------hhc
Confidence 9999999999999988777654 23466777787764 35889999999999999987 355
Q ss_pred CCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecc
Q 001047 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFST 349 (1174)
Q Consensus 270 ~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~ 349 (1174)
.|+-..++++|||++|.|.+|...+..++.++....|+++||||+|. .+..|-... ---|++..+..
T Consensus 323 sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~--KIQ~FAkSA-----------LVKPvtvNVGR 389 (610)
T KOG0341|consen 323 SLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPK--KIQNFAKSA-----------LVKPVTVNVGR 389 (610)
T ss_pred cHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccH--HHHHHHHhh-----------cccceEEeccc
Confidence 67788999999999999999999999999999999999999999983 233222210 01122222211
Q ss_pred cccccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhH
Q 001047 350 KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 429 (1174)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 429 (1174)
.. ...++-.-...|+. ....+
T Consensus 390 AG---------AAsldViQevEyVk--------------------------------------------------qEaKi 410 (610)
T KOG0341|consen 390 AG---------AASLDVIQEVEYVK--------------------------------------------------QEAKI 410 (610)
T ss_pred cc---------ccchhHHHHHHHHH--------------------------------------------------hhhhh
Confidence 00 00000000011220 11123
Q ss_pred HHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCC
Q 001047 430 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509 (1174)
Q Consensus 430 ~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl 509 (1174)
+.++..|. ....|++|||..+..++.+.++|.-.|. .+..+|||-
T Consensus 411 VylLeCLQ-KT~PpVLIFaEkK~DVD~IhEYLLlKGV----------------------------------EavaIHGGK 455 (610)
T KOG0341|consen 411 VYLLECLQ-KTSPPVLIFAEKKADVDDIHEYLLLKGV----------------------------------EAVAIHGGK 455 (610)
T ss_pred hhHHHHhc-cCCCceEEEeccccChHHHHHHHHHccc----------------------------------eeEEeecCc
Confidence 33344443 4457999999999999999998864443 467889999
Q ss_pred CHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEe
Q 001047 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ 589 (1174)
Q Consensus 510 ~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~ 589 (1174)
.+++|...++.|+.|+-+|||||++++.|+|+|++.+||| |+.|-.+.+|+||+||+||.| +.|.+-.|.
T Consensus 456 DQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN--------yDMP~eIENYVHRIGRTGRsg--~~GiATTfI 525 (610)
T KOG0341|consen 456 DQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN--------YDMPEEIENYVHRIGRTGRSG--KTGIATTFI 525 (610)
T ss_pred chhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc--------CCChHHHHHHHHHhcccCCCC--Ccceeeeee
Confidence 9999999999999999999999999999999999999999 999999999999999999999 889998887
Q ss_pred CCCC
Q 001047 590 TPYE 593 (1174)
Q Consensus 590 ~~~~ 593 (1174)
+...
T Consensus 526 NK~~ 529 (610)
T KOG0341|consen 526 NKNQ 529 (610)
T ss_pred cccc
Confidence 6644
No 47
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-38 Score=337.49 Aligned_cols=325 Identities=19% Similarity=0.216 Sum_probs=250.3
Q ss_pred ccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh---------cCCeEEEEcccH
Q 001047 142 FGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---------NQRRIFYTTPLK 212 (1174)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~---------~g~rvlvl~Ptr 212 (1174)
|+..+..++.+++.+.-+|+|+|.+|+|.+++|.|++.+|.||+|||++|++|-+.++. .+..+|+++||+
T Consensus 225 Fq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptr 304 (629)
T KOG0336|consen 225 FQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTR 304 (629)
T ss_pred HhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccH
Confidence 44455556777777777999999999999999999999999999999999999765542 356899999999
Q ss_pred HHHHHHHHHHHHH-h-CCCeEEEEeCCCC------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc
Q 001047 213 ALSNQKFREFRET-F-GDNNVGLLTGDSA------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 213 aLa~Q~~~~l~~~-~-g~~~v~lltGd~~------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~ 284 (1174)
+|+.|+.-+..++ + |-..++++.|+.. ..++..|+++||++|.++.+. +...+..+.++|+|||++
T Consensus 305 eLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~------n~i~l~siTYlVlDEADr 378 (629)
T KOG0336|consen 305 ELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD------NVINLASITYLVLDEADR 378 (629)
T ss_pred HHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc------CeeeeeeeEEEEecchhh
Confidence 9999998888764 2 3345666666543 346889999999999998887 566788999999999999
Q ss_pred cccCCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHH-HHhcccCceeeecCCCCccc---cEEeecccccccccccc
Q 001047 285 LSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAG-WIGQIHGKTELITSSRRPVP---LTWYFSTKTALLPLLDE 359 (1174)
Q Consensus 285 l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~-~l~~~~~~~~~i~~~~rpvp---l~~~~~~~~~~~~~~~~ 359 (1174)
|+|++|.+.+..++.-..++.|+++.|||.|. ...++. |+. .+..++....--+. +.+++. +.
T Consensus 379 MLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~K---ep~~v~vGsLdL~a~~sVkQ~i~--------v~- 446 (629)
T KOG0336|consen 379 MLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLK---EPMIVYVGSLDLVAVKSVKQNII--------VT- 446 (629)
T ss_pred hhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhh---CceEEEecccceeeeeeeeeeEE--------ec-
Confidence 99999999999999999999999999999985 344443 332 12222211110000 000000 00
Q ss_pred cccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHh-
Q 001047 360 KGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS- 438 (1174)
Q Consensus 360 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~- 438 (1174)
.-.....++..+..
T Consensus 447 -----------------------------------------------------------------~d~~k~~~~~~f~~~ 461 (629)
T KOG0336|consen 447 -----------------------------------------------------------------TDSEKLEIVQFFVAN 461 (629)
T ss_pred -----------------------------------------------------------------ccHHHHHHHHHHHHh
Confidence 00011122222222
Q ss_pred -CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHH
Q 001047 439 -RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 517 (1174)
Q Consensus 439 -~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v 517 (1174)
....++||||.++..++.+...+.-.|+ ....+||+-.+.+|+..
T Consensus 462 ms~ndKvIiFv~~K~~AD~LSSd~~l~gi----------------------------------~~q~lHG~r~Q~DrE~a 507 (629)
T KOG0336|consen 462 MSSNDKVIIFVSRKVMADHLSSDFCLKGI----------------------------------SSQSLHGNREQSDREMA 507 (629)
T ss_pred cCCCceEEEEEechhhhhhccchhhhccc----------------------------------chhhccCChhhhhHHHH
Confidence 2346899999999888887766654444 34458999999999999
Q ss_pred HHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 518 EELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 518 ~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
++.|+.|.++|||||+++++|+|+|++++|++ |++|.++.+|+||+||+||+| ..|.++.+.+..+
T Consensus 508 l~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N--------yDFP~nIeeYVHRvGrtGRaG--r~G~sis~lt~~D 573 (629)
T KOG0336|consen 508 LEDFKSGEVRILVATDLASRGLDVPDITHVYN--------YDFPRNIEEYVHRVGRTGRAG--RTGTSISFLTRND 573 (629)
T ss_pred HHhhhcCceEEEEEechhhcCCCchhcceeec--------cCCCccHHHHHHHhcccccCC--CCcceEEEEehhh
Confidence 99999999999999999999999999999999 999999999999999999999 8899987776543
No 48
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-38 Score=347.80 Aligned_cols=335 Identities=19% Similarity=0.220 Sum_probs=262.6
Q ss_pred HHHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh--------cCCeEEE
Q 001047 136 CNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA--------NQRRIFY 207 (1174)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~--------~g~rvlv 207 (1174)
...|..|+........+.+.-+.+|+|+|.+++|..+.|++++..|-||||||.+|++|++.++. .|+..+|
T Consensus 222 vtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vi 301 (731)
T KOG0339|consen 222 VTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVI 301 (731)
T ss_pred cchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEE
Confidence 45567777777778888888889999999999999999999999999999999999999987763 4678999
Q ss_pred EcccHHHHHHHHHHHHHH---hCCCeEEEEeCCCC------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEE
Q 001047 208 TTPLKALSNQKFREFRET---FGDNNVGLLTGDSA------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIV 278 (1174)
Q Consensus 208 l~PtraLa~Q~~~~l~~~---~g~~~v~lltGd~~------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVI 278 (1174)
++|||+|+.|++.+.+++ +|-..|+++.|... +..++.||||||++|.+|+.. ....+.++.++|
T Consensus 302 lvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm------Katn~~rvS~LV 375 (731)
T KOG0339|consen 302 LVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM------KATNLSRVSYLV 375 (731)
T ss_pred EeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh------hcccceeeeEEE
Confidence 999999999999998874 23234555555442 235899999999999999976 466789999999
Q ss_pred EccccccccCCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHH-HHhcccCceeeecCCCCccccEEeeccccccccc
Q 001047 279 LDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAG-WIGQIHGKTELITSSRRPVPLTWYFSTKTALLPL 356 (1174)
Q Consensus 279 iDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~-~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~ 356 (1174)
||||++|.+.+|.+.+..|..+..++.|.|+||||++- .+.++. +|. +++.++..+.-
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~---dpVrvVqg~vg----------------- 435 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILS---DPVRVVQGEVG----------------- 435 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhc---CCeeEEEeehh-----------------
Confidence 99999999999999999999999999999999999973 233332 222 22222221110
Q ss_pred ccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHH
Q 001047 357 LDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL 436 (1174)
Q Consensus 357 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l 436 (1174)
..+..+...+ ++ .. .......-+++.|
T Consensus 436 --ean~dITQ~V---~V----------------------------------------~~--------s~~~Kl~wl~~~L 462 (731)
T KOG0339|consen 436 --EANEDITQTV---SV----------------------------------------CP--------SEEKKLNWLLRHL 462 (731)
T ss_pred --ccccchhhee---ee----------------------------------------cc--------CcHHHHHHHHHHh
Confidence 0000000000 00 00 0000111122333
Q ss_pred HhC-CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHH
Q 001047 437 RSR-DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKS 515 (1174)
Q Consensus 437 ~~~-~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~ 515 (1174)
... ..+.+|||+.-+..++.++..|.-.++ .|..+||.|.+.+|.
T Consensus 463 ~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~----------------------------------~v~llhgdkdqa~rn 508 (731)
T KOG0339|consen 463 VEFSSEGKVLIFVTKKADAEEIAANLKLKGF----------------------------------NVSLLHGDKDQAERN 508 (731)
T ss_pred hhhccCCcEEEEEeccCCHHHHHHHhccccc----------------------------------eeeeecCchhhHHHH
Confidence 332 447899999999999999988875555 799999999999999
Q ss_pred HHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 516 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 516 ~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
.++..|+.+...|||||+++++|+|||.+..||+ |+...++..|.||+||+||.| ..|+++.+.++.+
T Consensus 509 ~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn--------yD~ardIdththrigrtgRag--~kGvayTlvTeKD 576 (731)
T KOG0339|consen 509 EVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN--------YDFARDIDTHTHRIGRTGRAG--EKGVAYTLVTEKD 576 (731)
T ss_pred HHHHHHhhcCCceEEEeeHhhcCCCccccceeec--------ccccchhHHHHHHhhhccccc--ccceeeEEechhh
Confidence 9999999999999999999999999999999999 888999999999999999999 7899999998865
No 49
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.2e-36 Score=380.84 Aligned_cols=310 Identities=20% Similarity=0.264 Sum_probs=233.8
Q ss_pred CChHHHhhcCCCCCCHHHHHHHHHHHcC------CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHH
Q 001047 147 IDVDELASIYDFRIDKFQRSSIEAFLRG------SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFR 220 (1174)
Q Consensus 147 ~~~~~l~~~~~~~~~~~Q~~ai~~ll~g------~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~ 220 (1174)
.....|...++|.||+.|.+||+.+.++ .|.+++||||||||.+|+.|++..+.++.+++|++||++||.|+++
T Consensus 439 ~~~~~~~~~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~ 518 (926)
T TIGR00580 439 EWQQEFEDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFE 518 (926)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHH
Confidence 3456788889999999999999999875 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC--CeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccccc
Q 001047 221 EFRETFGD--NNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287 (1174)
Q Consensus 221 ~l~~~~g~--~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d 287 (1174)
.|++.++. .++++++|.... +..++|+|+||..+ . ....+.++++|||||+|++
T Consensus 519 ~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~-------~~v~f~~L~llVIDEahrf-- 585 (926)
T TIGR00580 519 TFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q-------KDVKFKDLGLLIIDEEQRF-- 585 (926)
T ss_pred HHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h-------CCCCcccCCEEEeeccccc--
Confidence 99998865 467788886542 23689999999533 2 2345789999999999995
Q ss_pred CCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecC-CCCccccEEeecccccccccccccccccch
Q 001047 288 ISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS-SRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366 (1174)
Q Consensus 288 ~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~-~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~ 366 (1174)
+....+.+..++.++++++||||+ .++.+...+..... ..++.. .....|+..++... ..
T Consensus 586 ---gv~~~~~L~~~~~~~~vL~~SATp-iprtl~~~l~g~~d-~s~I~~~p~~R~~V~t~v~~~--------------~~ 646 (926)
T TIGR00580 586 ---GVKQKEKLKELRTSVDVLTLSATP-IPRTLHMSMSGIRD-LSIIATPPEDRLPVRTFVMEY--------------DP 646 (926)
T ss_pred ---chhHHHHHHhcCCCCCEEEEecCC-CHHHHHHHHhcCCC-cEEEecCCCCccceEEEEEec--------------CH
Confidence 444455667777889999999996 44555444433222 122211 11111222211100 00
Q ss_pred hhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHH-HHHHhCCCCCeE
Q 001047 367 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTL-WHLRSRDMLPAI 445 (1174)
Q Consensus 367 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~~~I 445 (1174)
..+...+ ..+. .+++++
T Consensus 647 ------------------------------------------------------------~~i~~~i~~el~--~g~qv~ 664 (926)
T TIGR00580 647 ------------------------------------------------------------ELVREAIRRELL--RGGQVF 664 (926)
T ss_pred ------------------------------------------------------------HHHHHHHHHHHH--cCCeEE
Confidence 0001111 1222 346899
Q ss_pred EEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCC
Q 001047 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGL 525 (1174)
Q Consensus 446 VF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ 525 (1174)
|||+++.+++.+++.|.... | ...++.+||+|++.+|+.++..|++|+
T Consensus 665 if~n~i~~~e~l~~~L~~~~---------------------p-----------~~~v~~lHG~m~~~eRe~im~~F~~Gk 712 (926)
T TIGR00580 665 YVHNRIESIEKLATQLRELV---------------------P-----------EARIAIAHGQMTENELEEVMLEFYKGE 712 (926)
T ss_pred EEECCcHHHHHHHHHHHHhC---------------------C-----------CCeEEEecCCCCHHHHHHHHHHHHcCC
Confidence 99999999999988886421 0 126899999999999999999999999
Q ss_pred ceEEEechhhhhcCCcCCceEEEecccccCCCCccc-cCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 526 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-LTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 526 ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p-~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
++|||||+++++|||+|++++||. ++.+ .+..+|.||+||+||.| ..|.||+++.+.
T Consensus 713 ~~ILVaT~iie~GIDIp~v~~VIi--------~~a~~~gls~l~Qr~GRvGR~g--~~g~aill~~~~ 770 (926)
T TIGR00580 713 FQVLVCTTIIETGIDIPNANTIII--------ERADKFGLAQLYQLRGRVGRSK--KKAYAYLLYPHQ 770 (926)
T ss_pred CCEEEECChhhcccccccCCEEEE--------ecCCCCCHHHHHHHhcCCCCCC--CCeEEEEEECCc
Confidence 999999999999999999999998 4443 35678999999999998 799999998664
No 50
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-36 Score=325.50 Aligned_cols=341 Identities=18% Similarity=0.166 Sum_probs=250.5
Q ss_pred HHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcC--CcEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEccc
Q 001047 137 NEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRG--SSVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPL 211 (1174)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g--~~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~Pt 211 (1174)
.+|.++.+.+..+..+-.+..-.|+.+|..|+|.++.. +++|.++..|+|||.+|.+.++..+.. -+.+++++||
T Consensus 90 ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPt 169 (477)
T KOG0332|consen 90 KSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPT 169 (477)
T ss_pred ccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCch
Confidence 45566666665555555544456999999999999976 799999999999999999999988753 4689999999
Q ss_pred HHHHHHHHHHHHHHhCCC---eEEEEeCCCCCCC----CCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc
Q 001047 212 KALSNQKFREFRETFGDN---NVGLLTGDSAINR----EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 212 raLa~Q~~~~l~~~~g~~---~v~lltGd~~~~~----~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~ 284 (1174)
|+||.|+.+.+.+ .|.. ++.+..-+....+ ..+|+|+||+.+.+++.+. ....+..+.++|+|||+.
T Consensus 170 rELA~Q~~eVv~e-MGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~kl-----k~id~~kikvfVlDEAD~ 243 (477)
T KOG0332|consen 170 RELAPQTGEVVEE-MGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKL-----KCIDLEKIKVFVLDEADV 243 (477)
T ss_pred HHHHHHHHHHHHH-hcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHH-----HhhChhhceEEEecchhh
Confidence 9999999998888 3432 3333333332222 4689999999999887652 234577899999999999
Q ss_pred cccC-CcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHHHHhcccCceeeecCCCCccccEEeeccccccccccccccc
Q 001047 285 LSDI-SRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK 362 (1174)
Q Consensus 285 l~d~-~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~ 362 (1174)
|.+. +|+..--.+...+|++.|++++|||... ...|+.-+-.......+-.....-.++.
T Consensus 244 Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~Ik------------------ 305 (477)
T KOG0332|consen 244 MIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIK------------------ 305 (477)
T ss_pred hhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchh------------------
Confidence 9865 6788888889999999999999999853 2333333221111111100000000000
Q ss_pred ccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhC-CC
Q 001047 363 HMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR-DM 441 (1174)
Q Consensus 363 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~-~~ 441 (1174)
..|+.. ......++.|..+... ..
T Consensus 306 -------Qlyv~C------------------------------------------------~~~~~K~~~l~~lyg~~ti 330 (477)
T KOG0332|consen 306 -------QLYVLC------------------------------------------------ACRDDKYQALVNLYGLLTI 330 (477)
T ss_pred -------hheeec------------------------------------------------cchhhHHHHHHHHHhhhhh
Confidence 111110 0012233444444432 45
Q ss_pred CCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHH
Q 001047 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 521 (1174)
Q Consensus 442 ~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F 521 (1174)
+++||||.+++.+..++..|...|. .|..+||.|.-.+|..+...|
T Consensus 331 gqsiIFc~tk~ta~~l~~~m~~~Gh----------------------------------~V~~l~G~l~~~~R~~ii~~F 376 (477)
T KOG0332|consen 331 GQSIIFCHTKATAMWLYEEMRAEGH----------------------------------QVSLLHGDLTVEQRAAIIDRF 376 (477)
T ss_pred hheEEEEeehhhHHHHHHHHHhcCc----------------------------------eeEEeeccchhHHHHHHHHHH
Confidence 7999999999999999999987665 699999999999999999999
Q ss_pred hcCCceEEEechhhhhcCCcCCceEEEeccc--ccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHH
Q 001047 522 QRGLVKVVFATETLAAGINMPARTAVLSSLS--KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE 596 (1174)
Q Consensus 522 ~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~--k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~ 596 (1174)
+.|.-+|||+|++++||||++.|++||++.- +++|. .+...|+||+||+||.| +.|.+|-+.+....+.
T Consensus 377 r~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~----pD~etYlHRiGRtGRFG--kkG~a~n~v~~~~s~~ 447 (477)
T KOG0332|consen 377 REGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGE----PDYETYLHRIGRTGRFG--KKGLAINLVDDKDSMN 447 (477)
T ss_pred hcCcceEEEEechhhcccccceEEEEEecCCccccCCC----CCHHHHHHHhccccccc--ccceEEEeecccCcHH
Confidence 9999999999999999999999999999643 33332 46789999999999999 8999998887766554
No 51
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.8e-36 Score=355.48 Aligned_cols=453 Identities=28% Similarity=0.413 Sum_probs=297.9
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHHhCCC-----
Q 001047 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA--NQRRIFYTTPLKALSNQKFREFRETFGDN----- 229 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~--~g~rvlvl~PtraLa~Q~~~~l~~~~g~~----- 229 (1174)
+|.|..||.+.+..+-.+++++|+|||++|||.+-.+++-..++ ....+||++|+++|++|+...+..+|...
T Consensus 509 dF~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg 588 (1330)
T KOG0949|consen 509 DFCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRG 588 (1330)
T ss_pred ccCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccc
Confidence 36789999999999999999999999999999998888877765 46789999999999999998888877321
Q ss_pred --eEEEEeCCCCCCC-CCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCcc
Q 001047 230 --NVGLLTGDSAINR-EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 306 (1174)
Q Consensus 230 --~v~lltGd~~~~~-~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~q 306 (1174)
..|.++-+.++++ +++|+|+-|+.+..+|...+. ...+..++++||+||+|+++...-+..|++++...+ +.
T Consensus 589 ~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~---~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~--CP 663 (1330)
T KOG0949|consen 589 VSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPH---HQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP--CP 663 (1330)
T ss_pred hhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchh---hhhhhhcceEEEechhhhccccccchHHHHHHHhcC--CC
Confidence 2345566666765 799999999999999876422 245778999999999999999899999999988775 56
Q ss_pred EEEEccccCChHHHHHHHhccc----CceeeecCCCCccccEEeecccc---ccccccc-------------------cc
Q 001047 307 IICLSATVANADELAGWIGQIH----GKTELITSSRRPVPLTWYFSTKT---ALLPLLD-------------------EK 360 (1174)
Q Consensus 307 iI~LSATl~n~~~~~~~l~~~~----~~~~~i~~~~rpvpl~~~~~~~~---~~~~~~~-------------------~~ 360 (1174)
+|++|||++|+..|..|++... .+++.+.-..|--.+..++.... ..+++.. ..
T Consensus 664 ~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai~~~~~~~~~s~d 743 (1330)
T KOG0949|consen 664 FLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAIIVSLRELSESED 743 (1330)
T ss_pred eeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhccchhhccccCCC
Confidence 9999999999999999998432 25666655544433332222111 0000000 00
Q ss_pred c-c--ccch--hhhhhhhhc---ccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhh-----------
Q 001047 361 G-K--HMNR--KLSLNYLQL---STSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI----------- 421 (1174)
Q Consensus 361 ~-~--~~~~--~l~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------- 421 (1174)
. . ...+ .+...++.. ......++....... +........-......+.........+..+
T Consensus 744 d~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~-k~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k~Vnkq 822 (1330)
T KOG0949|consen 744 DNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTK-KEVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQTKEVNKQ 822 (1330)
T ss_pred CceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhhee-chHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhhhhhhhhH
Confidence 0 0 0000 000111100 000011111000000 000000000000000000000000000000
Q ss_pred ---h-----hcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhc--CCCCHHhHHH--------------HHH
Q 001047 422 ---R-----RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC--NLLDECEMSE--------------VEL 477 (1174)
Q Consensus 422 ---~-----~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~--~~~~~~e~~~--------------i~~ 477 (1174)
. ......++..+..|.+++..|+|+|..-|..|+.+|..+.+. ...-+..+.+ ..+
T Consensus 823 le~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~a~~r~K 902 (1330)
T KOG0949|consen 823 LESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMKKEAKRARDREK 902 (1330)
T ss_pred hhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011235788888899999999999999999999877654310 0000000000 000
Q ss_pred HHHHHHh--------------------------------------hCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 478 ALKRFRI--------------------------------------LYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 478 ~~~~~~~--------------------------------------~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
.-+++.. .+.......+++.|.+||++||+||....|..|+-
T Consensus 903 t~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR~~VEv 982 (1330)
T KOG0949|consen 903 TKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYRSLVEV 982 (1330)
T ss_pred HHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccccchHHHHHHHH
Confidence 0000000 00001123567899999999999999999999999
Q ss_pred HHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHH
Q 001047 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 599 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~ 599 (1174)
+|+.|.+.|||||+|++.|||||.++||+-+ ....+++-.|.||+|||||+|.|..|+++++--|. ..++
T Consensus 983 LFR~g~L~VlfaT~TLsLGiNMPCrTVvF~g-------DsLQL~plny~QmaGRAGRRGFD~lGnV~FmgiP~---~kv~ 1052 (1330)
T KOG0949|consen 983 LFRQGHLQVLFATETLSLGINMPCRTVVFAG-------DSLQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIPR---QKVQ 1052 (1330)
T ss_pred HhhcCceEEEEEeeehhcccCCCceeEEEec-------cccccCchhHHhhhccccccccccccceEEEeCcH---HHHH
Confidence 9999999999999999999999999999984 23678999999999999999999999999998774 4788
Q ss_pred HHhhCCCcceeeeeccchhHHHHHhh
Q 001047 600 KLLFAGVEPLVSQFTASYGMVLNLLA 625 (1174)
Q Consensus 600 ~~~~~~~~pl~S~f~~~y~~vlnll~ 625 (1174)
+++.+....+..+|.-+-..+|.|-.
T Consensus 1053 rLlts~L~diqG~~p~T~~~~l~l~~ 1078 (1330)
T KOG0949|consen 1053 RLLTSLLPDIQGAYPYTNTSFLGLDL 1078 (1330)
T ss_pred HHHHHhhhcccCCCcchhhHHHHHHH
Confidence 99988888888888776555655533
No 52
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.8e-35 Score=369.10 Aligned_cols=317 Identities=18% Similarity=0.227 Sum_probs=242.0
Q ss_pred CHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCC---CeEEE-EeC
Q 001047 161 DKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGD---NNVGL-LTG 236 (1174)
Q Consensus 161 ~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~---~~v~l-ltG 236 (1174)
..+-.+.+..+.+++++|++|+||||||+++.+++++....+.+++|++|||++|.|+++++.+.++. ..||. +.+
T Consensus 4 ~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~ 83 (819)
T TIGR01970 4 HAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRG 83 (819)
T ss_pred hHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcc
Confidence 44556778888889999999999999999999999988766779999999999999999999877753 24554 345
Q ss_pred CCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc-cccCCcHHH-HHHHHHHCCCCccEEEEcccc
Q 001047 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY-LSDISRGTV-WEEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 237 d~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~-l~d~~~g~~-~e~ii~~l~~~~qiI~LSATl 314 (1174)
+...+.+++|+|+|+++|.+++.+ ...+.++++|||||+|. +.+.+++.. +..+...++++.|+|+||||+
T Consensus 84 ~~~~s~~t~I~v~T~G~Llr~l~~-------d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl 156 (819)
T TIGR01970 84 ENKVSRRTRLEVVTEGILTRMIQD-------DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATL 156 (819)
T ss_pred ccccCCCCcEEEECCcHHHHHHhh-------CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 555667899999999999999874 44689999999999995 566566543 345566678899999999999
Q ss_pred CChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCccccccc
Q 001047 315 ANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394 (1174)
Q Consensus 315 ~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 394 (1174)
+ ...+..+++. +.++....+..|+.++|..... ...+
T Consensus 157 ~-~~~l~~~l~~----~~vI~~~gr~~pVe~~y~~~~~------------~~~~-------------------------- 193 (819)
T TIGR01970 157 D-GERLSSLLPD----APVVESEGRSFPVEIRYLPLRG------------DQRL-------------------------- 193 (819)
T ss_pred C-HHHHHHHcCC----CcEEEecCcceeeeeEEeecch------------hhhH--------------------------
Confidence 5 4557777742 4556666676676655432100 0000
Q ss_pred cccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHH
Q 001047 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE 474 (1174)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~ 474 (1174)
...+...+..+.....+.+|||++++.+++.++..|.+.--
T Consensus 194 -------------------------------~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~-------- 234 (819)
T TIGR01970 194 -------------------------------EDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLD-------- 234 (819)
T ss_pred -------------------------------HHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcC--------
Confidence 00111222333333457899999999999999998864100
Q ss_pred HHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEeccccc
Q 001047 475 VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554 (1174)
Q Consensus 475 i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~ 554 (1174)
-...+.++||+|++.+|..+++.|++|..+|||||+++++|||||++++||+++..+
T Consensus 235 -----------------------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r 291 (819)
T TIGR01970 235 -----------------------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLAR 291 (819)
T ss_pred -----------------------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccc
Confidence 011588999999999999999999999999999999999999999999999986432
Q ss_pred ----CCC------CccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 555 ----TAS------GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 555 ----~~~------~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
+.. ...++|.++|.||+|||||. ..|.||.+++..
T Consensus 292 ~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 292 VARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred ccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 221 12478999999999999998 499999999763
No 53
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.6e-35 Score=369.53 Aligned_cols=318 Identities=19% Similarity=0.247 Sum_probs=225.4
Q ss_pred ChHHHhhcCCCCCCHHHHHHHHHHHcC------CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHH
Q 001047 148 DVDELASIYDFRIDKFQRSSIEAFLRG------SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFRE 221 (1174)
Q Consensus 148 ~~~~l~~~~~~~~~~~Q~~ai~~ll~g------~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~ 221 (1174)
..+.+...++|+||++|.+|++.+.++ .+++++||||||||++|++|++..+.+|.+++|++||++||.|+++.
T Consensus 250 ~~~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~ 329 (681)
T PRK10917 250 LLKKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYEN 329 (681)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHH
Confidence 346688889999999999999999876 37999999999999999999999999999999999999999999999
Q ss_pred HHHHhCC--CeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccC
Q 001047 222 FRETFGD--NNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI 288 (1174)
Q Consensus 222 l~~~~g~--~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~ 288 (1174)
+++++.. .++++++|+.+. +..++|+|+||+.+.. ...+.++++||+||+|++...
T Consensus 330 l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----------~v~~~~l~lvVIDE~Hrfg~~ 398 (681)
T PRK10917 330 LKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----------DVEFHNLGLVIIDEQHRFGVE 398 (681)
T ss_pred HHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----------cchhcccceEEEechhhhhHH
Confidence 9998764 689999998863 2369999999987643 234678999999999996533
Q ss_pred CcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecC-CCCccccEEeecccccccccccccccccchh
Q 001047 289 SRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS-SRRPVPLTWYFSTKTALLPLLDEKGKHMNRK 367 (1174)
Q Consensus 289 ~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~-~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~ 367 (1174)
.+ ..+......+++++||||+. +..++..+.... ....+.. .....|+..++...
T Consensus 399 qr-----~~l~~~~~~~~iL~~SATp~-prtl~~~~~g~~-~~s~i~~~p~~r~~i~~~~~~~----------------- 454 (681)
T PRK10917 399 QR-----LALREKGENPHVLVMTATPI-PRTLAMTAYGDL-DVSVIDELPPGRKPITTVVIPD----------------- 454 (681)
T ss_pred HH-----HHHHhcCCCCCEEEEeCCCC-HHHHHHHHcCCC-ceEEEecCCCCCCCcEEEEeCc-----------------
Confidence 22 23334455689999999973 343332221100 1111110 00000111110000
Q ss_pred hhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEE
Q 001047 368 LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447 (1174)
Q Consensus 368 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF 447 (1174)
.....+.+.+.... ..+.+++||
T Consensus 455 --------------------------------------------------------~~~~~~~~~i~~~~-~~g~q~~v~ 477 (681)
T PRK10917 455 --------------------------------------------------------SRRDEVYERIREEI-AKGRQAYVV 477 (681)
T ss_pred --------------------------------------------------------ccHHHHHHHHHHHH-HcCCcEEEE
Confidence 00111222232222 245699999
Q ss_pred ecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCce
Q 001047 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVK 527 (1174)
Q Consensus 448 ~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ik 527 (1174)
|+..++++.+. ........+.+...++ ...++.+||+|++.+|+.+++.|++|+++
T Consensus 478 ~~~ie~s~~l~-------------~~~~~~~~~~L~~~~~-----------~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ 533 (681)
T PRK10917 478 CPLIEESEKLD-------------LQSAEETYEELQEAFP-----------ELRVGLLHGRMKPAEKDAVMAAFKAGEID 533 (681)
T ss_pred Ecccccccchh-------------HHHHHHHHHHHHHHCC-----------CCcEEEEeCCCCHHHHHHHHHHHHcCCCC
Confidence 99765543210 0001111122211111 13699999999999999999999999999
Q ss_pred EEEechhhhhcCCcCCceEEEecccccCCCCcccc-CHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 528 VVFATETLAAGINMPARTAVLSSLSKRTASGRIQL-TSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 528 VLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~-s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
|||||+++++|||+|++++||+ ++.+. +...|.||+||+||.| ..|.|+++.+.
T Consensus 534 ILVaT~vie~GiDip~v~~VIi--------~~~~r~gls~lhQ~~GRvGR~g--~~g~~ill~~~ 588 (681)
T PRK10917 534 ILVATTVIEVGVDVPNATVMVI--------ENAERFGLAQLHQLRGRVGRGA--AQSYCVLLYKD 588 (681)
T ss_pred EEEECcceeeCcccCCCcEEEE--------eCCCCCCHHHHHHHhhcccCCC--CceEEEEEECC
Confidence 9999999999999999999998 55443 5788999999999998 78999999853
No 54
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4.7e-35 Score=366.49 Aligned_cols=319 Identities=17% Similarity=0.193 Sum_probs=239.9
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCC---CeEEEEe
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGD---NNVGLLT 235 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~---~~v~llt 235 (1174)
+...+-.+.+..+.++++++++||||||||++|.+++++....+++++|++|||++|.|+++++.+.++. ..||...
T Consensus 5 Pi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~v 84 (812)
T PRK11664 5 PVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRM 84 (812)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEe
Confidence 3445566778888889999999999999999999999977555569999999999999999999876653 3466544
Q ss_pred -CCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccc-ccCCcH-HHHHHHHHHCCCCccEEEEcc
Q 001047 236 -GDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL-SDISRG-TVWEEIIIYCPKEVQIICLSA 312 (1174)
Q Consensus 236 -Gd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l-~d~~~g-~~~e~ii~~l~~~~qiI~LSA 312 (1174)
|+...+.+++|+|+||++|.+++.. ...+.++++|||||+|.. .+.+.. ....+++..++++.|+|+|||
T Consensus 85 r~~~~~~~~t~I~v~T~G~Llr~l~~-------d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 85 RAESKVGPNTRLEVVTEGILTRMIQR-------DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred cCccccCCCCcEEEEChhHHHHHHhh-------CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEec
Confidence 4445667889999999999999874 446899999999999974 333322 233456667788999999999
Q ss_pred ccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCccccc
Q 001047 313 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN 392 (1174)
Q Consensus 313 Tl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 392 (1174)
|++ .+.+..++.. +.++....+..|+.++|..... ...+
T Consensus 158 Tl~-~~~l~~~~~~----~~~I~~~gr~~pV~~~y~~~~~------------~~~~------------------------ 196 (812)
T PRK11664 158 TLD-NDRLQQLLPD----APVIVSEGRSFPVERRYQPLPA------------HQRF------------------------ 196 (812)
T ss_pred CCC-HHHHHHhcCC----CCEEEecCccccceEEeccCch------------hhhH------------------------
Confidence 995 4567777642 4455566666676655432100 0000
Q ss_pred cccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhH
Q 001047 393 SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEM 472 (1174)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~ 472 (1174)
...+...+..+.....+.+|||++++++++.+++.|.....
T Consensus 197 ---------------------------------~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~------ 237 (812)
T PRK11664 197 ---------------------------------DEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVA------ 237 (812)
T ss_pred ---------------------------------HHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhcc------
Confidence 00111223333334457899999999999999999874100
Q ss_pred HHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEeccc
Q 001047 473 SEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS 552 (1174)
Q Consensus 473 ~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~ 552 (1174)
....+..+||+|++.+|..++..|++|..+|||||+++++|||||++++||+++.
T Consensus 238 -------------------------~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl 292 (812)
T PRK11664 238 -------------------------SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGL 292 (812)
T ss_pred -------------------------CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCC
Confidence 0015888999999999999999999999999999999999999999999999764
Q ss_pred c----cCCC------CccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 553 K----RTAS------GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 553 k----~~~~------~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
. ||.. ...++|.++|.||+|||||.+ .|.||.++++.
T Consensus 293 ~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~---~G~cyrL~t~~ 339 (812)
T PRK11664 293 ERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE---PGICLHLYSKE 339 (812)
T ss_pred cccccccccCCcceeEEEeechhhhhhhccccCCCC---CcEEEEecCHH
Confidence 3 2221 124688899999999999984 99999998763
No 55
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=4.9e-35 Score=376.17 Aligned_cols=311 Identities=19% Similarity=0.257 Sum_probs=229.7
Q ss_pred CChHHHhhcCCCCCCHHHHHHHHHHHcC------CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHH
Q 001047 147 IDVDELASIYDFRIDKFQRSSIEAFLRG------SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFR 220 (1174)
Q Consensus 147 ~~~~~l~~~~~~~~~~~Q~~ai~~ll~g------~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~ 220 (1174)
.....+...++|.||+.|.+||+.++.+ .|++++|+||+|||.+|+.+++..+.++.+++|++||++||.|+++
T Consensus 588 ~~~~~~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~ 667 (1147)
T PRK10689 588 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667 (1147)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHH
Confidence 4456788999999999999999999986 7999999999999999999998888889999999999999999999
Q ss_pred HHHHHhCC--CeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccccc
Q 001047 221 EFRETFGD--NNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287 (1174)
Q Consensus 221 ~l~~~~g~--~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d 287 (1174)
.|.+.|+. ..+..++|..+. +..++|+|+||+.+. . ...+.++++|||||+|++.
T Consensus 668 ~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~----~-------~v~~~~L~lLVIDEahrfG- 735 (1147)
T PRK10689 668 NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ----S-------DVKWKDLGLLIVDEEHRFG- 735 (1147)
T ss_pred HHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh----C-------CCCHhhCCEEEEechhhcc-
Confidence 99998765 467777776542 236899999997542 1 2346789999999999973
Q ss_pred CCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecC-CCCccccEEeecccccccccccccccccch
Q 001047 288 ISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS-SRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366 (1174)
Q Consensus 288 ~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~-~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~ 366 (1174)
....+.+..++.++|+++||||+. ++.+...+..... ...+.. .....++..++...
T Consensus 736 ----~~~~e~lk~l~~~~qvLl~SATpi-prtl~l~~~gl~d-~~~I~~~p~~r~~v~~~~~~~---------------- 793 (1147)
T PRK10689 736 ----VRHKERIKAMRADVDILTLTATPI-PRTLNMAMSGMRD-LSIIATPPARRLAVKTFVREY---------------- 793 (1147)
T ss_pred ----hhHHHHHHhcCCCCcEEEEcCCCC-HHHHHHHHhhCCC-cEEEecCCCCCCCceEEEEec----------------
Confidence 223455677888999999999974 3323222222221 222221 11111221111000
Q ss_pred hhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEE
Q 001047 367 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446 (1174)
Q Consensus 367 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IV 446 (1174)
.. .......+..+. .+++++|
T Consensus 794 -----------------------------------------------~~----------~~~k~~il~el~--r~gqv~v 814 (1147)
T PRK10689 794 -----------------------------------------------DS----------LVVREAILREIL--RGGQVYY 814 (1147)
T ss_pred -----------------------------------------------Cc----------HHHHHHHHHHHh--cCCeEEE
Confidence 00 000111222232 2468999
Q ss_pred EecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCc
Q 001047 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLV 526 (1174)
Q Consensus 447 F~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~i 526 (1174)
||+++..++.+++.|.... | ..++..+||+|++.+|+.++..|++|++
T Consensus 815 f~n~i~~ie~la~~L~~~~---------------------p-----------~~~v~~lHG~m~q~eRe~im~~Fr~Gk~ 862 (1147)
T PRK10689 815 LYNDVENIQKAAERLAELV---------------------P-----------EARIAIGHGQMRERELERVMNDFHHQRF 862 (1147)
T ss_pred EECCHHHHHHHHHHHHHhC---------------------C-----------CCcEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 9999999999998886431 0 1268999999999999999999999999
Q ss_pred eEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 527 KVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 527 kVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
+|||||+++++|||+|++++||... ....+...|+||+||+||.| ..|.|++++.+
T Consensus 863 ~VLVaTdIierGIDIP~v~~VIi~~-------ad~fglaq~~Qr~GRvGR~g--~~g~a~ll~~~ 918 (1147)
T PRK10689 863 NVLVCTTIIETGIDIPTANTIIIER-------ADHFGLAQLHQLRGRVGRSH--HQAYAWLLTPH 918 (1147)
T ss_pred CEEEECchhhcccccccCCEEEEec-------CCCCCHHHHHHHhhccCCCC--CceEEEEEeCC
Confidence 9999999999999999999998521 11235667999999999998 89999988755
No 56
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=4.9e-35 Score=362.92 Aligned_cols=318 Identities=19% Similarity=0.255 Sum_probs=221.0
Q ss_pred hHHHhhcCCCCCCHHHHHHHHHHHcC------CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHH
Q 001047 149 VDELASIYDFRIDKFQRSSIEAFLRG------SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREF 222 (1174)
Q Consensus 149 ~~~l~~~~~~~~~~~Q~~ai~~ll~g------~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l 222 (1174)
...+.+.++|.||++|++|++.++.+ .+.+++||||||||++|++|++..+.+|.+++|++||++|+.|+++.+
T Consensus 225 ~~~~~~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~ 304 (630)
T TIGR00643 225 LTKFLASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSL 304 (630)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHH
Confidence 45577788999999999999999875 268999999999999999999999999999999999999999999999
Q ss_pred HHHhC--CCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCC
Q 001047 223 RETFG--DNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDIS 289 (1174)
Q Consensus 223 ~~~~g--~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~ 289 (1174)
.+.++ +.++++++|+... +..++|+|+||+.+.. ...+.++++|||||+|+++...
T Consensus 305 ~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----------~~~~~~l~lvVIDEaH~fg~~q 373 (630)
T TIGR00643 305 RNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----------KVEFKRLALVIIDEQHRFGVEQ 373 (630)
T ss_pred HHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----------cccccccceEEEechhhccHHH
Confidence 99886 3689999998753 2367999999987653 2346789999999999976433
Q ss_pred cHHHHHHHHHHCC--CCccEEEEccccCChHHHHHHHhcccCceeeecC-CCCccccEEeecccccccccccccccccch
Q 001047 290 RGTVWEEIIIYCP--KEVQIICLSATVANADELAGWIGQIHGKTELITS-SRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366 (1174)
Q Consensus 290 ~g~~~e~ii~~l~--~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~-~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~ 366 (1174)
+...+ .... ..+++++||||+. ++.++..+.... ....+.. .....|+..++...
T Consensus 374 r~~l~----~~~~~~~~~~~l~~SATp~-prtl~l~~~~~l-~~~~i~~~p~~r~~i~~~~~~~---------------- 431 (630)
T TIGR00643 374 RKKLR----EKGQGGFTPHVLVMSATPI-PRTLALTVYGDL-DTSIIDELPPGRKPITTVLIKH---------------- 431 (630)
T ss_pred HHHHH----HhcccCCCCCEEEEeCCCC-cHHHHHHhcCCc-ceeeeccCCCCCCceEEEEeCc----------------
Confidence 33322 2222 2678999999974 333332211100 0011100 00001111110000
Q ss_pred hhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEE
Q 001047 367 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446 (1174)
Q Consensus 367 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IV 446 (1174)
.....+...+.... ..+.+++|
T Consensus 432 ---------------------------------------------------------~~~~~~~~~i~~~l-~~g~q~~v 453 (630)
T TIGR00643 432 ---------------------------------------------------------DEKDIVYEFIEEEI-AKGRQAYV 453 (630)
T ss_pred ---------------------------------------------------------chHHHHHHHHHHHH-HhCCcEEE
Confidence 00011122222211 23468999
Q ss_pred EecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCc
Q 001047 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLV 526 (1174)
Q Consensus 447 F~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~i 526 (1174)
||+...+++.+. ........+.+...++ ...|+.+||+|++.+|..+++.|++|++
T Consensus 454 ~~~~i~~s~~~~-------------~~~a~~~~~~L~~~~~-----------~~~v~~lHG~m~~~eR~~i~~~F~~g~~ 509 (630)
T TIGR00643 454 VYPLIEESEKLD-------------LKAAEALYERLKKAFP-----------KYNVGLLHGRMKSDEKEAVMEEFREGEV 509 (630)
T ss_pred EEccccccccch-------------HHHHHHHHHHHHhhCC-----------CCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 998875543220 0011111111111111 2369999999999999999999999999
Q ss_pred eEEEechhhhhcCCcCCceEEEecccccCCCCccc-cCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 527 KVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-LTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 527 kVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p-~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
+|||||+++++|||+|++++||+ ++.+ .+...|.||+||+||.| ..|.|+++...
T Consensus 510 ~ILVaT~vie~GvDiP~v~~VIi--------~~~~r~gls~lhQ~~GRvGR~g--~~g~~il~~~~ 565 (630)
T TIGR00643 510 DILVATTVIEVGVDVPNATVMVI--------EDAERFGLSQLHQLRGRVGRGD--HQSYCLLVYKN 565 (630)
T ss_pred CEEEECceeecCcccCCCcEEEE--------eCCCcCCHHHHHHHhhhcccCC--CCcEEEEEECC
Confidence 99999999999999999999998 4444 36788999999999998 78999999843
No 57
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-36 Score=341.39 Aligned_cols=327 Identities=21% Similarity=0.262 Sum_probs=245.2
Q ss_pred CChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc--------CCeEEEEcccHHHHHHH
Q 001047 147 IDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN--------QRRIFYTTPLKALSNQK 218 (1174)
Q Consensus 147 ~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~--------g~rvlvl~PtraLa~Q~ 218 (1174)
..+..+.....-.|+|+|.+|+|.++.+++++.|||||||||++|.+|++..+.. |-+++|+.|||+|+.|+
T Consensus 146 ~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi 225 (593)
T KOG0344|consen 146 RLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQI 225 (593)
T ss_pred HHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHH
Confidence 3355556665567999999999999999999999999999999999999988752 34899999999999999
Q ss_pred HHHHHHHh--CC--CeEEEEeCCCC--------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 219 FREFRETF--GD--NNVGLLTGDSA--------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 219 ~~~l~~~~--g~--~~v~lltGd~~--------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
|+++.++- .+ ..+..+..... ....++|+|.||-++...+.... ....+.+|.|+|+||++.+.
T Consensus 226 ~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~----~~idl~~V~~lV~dEaD~lf 301 (593)
T KOG0344|consen 226 YREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGK----LNIDLSKVEWLVVDEADLLF 301 (593)
T ss_pred HHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCC----ccchhheeeeEeechHHhhh
Confidence 99999964 11 12333333311 11357899999999998886521 12468899999999999999
Q ss_pred cC-CcHHHHHHHHHHC-CCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeeccccccccccccccccc
Q 001047 287 DI-SRGTVWEEIIIYC-PKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM 364 (1174)
Q Consensus 287 d~-~~g~~~e~ii~~l-~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~ 364 (1174)
+. .|..++..++..| .+++.+=+||||++ ..+.+|..........+....++..
T Consensus 302 e~~~f~~Qla~I~sac~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~~vivg~~~sa---------------------- 357 (593)
T KOG0344|consen 302 EPEFFVEQLADIYSACQSPDIRVALFSATIS--VYVEEWAELIKSDLKRVIVGLRNSA---------------------- 357 (593)
T ss_pred ChhhHHHHHHHHHHHhcCcchhhhhhhcccc--HHHHHHHHHhhccceeEEEecchhH----------------------
Confidence 88 7888888888776 45788889999975 6777787654432222211111100
Q ss_pred chhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhC-CCCC
Q 001047 365 NRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR-DMLP 443 (1174)
Q Consensus 365 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~ 443 (1174)
+..+.+..+ |.. ..... +-.+.++... -..|
T Consensus 358 ~~~V~Qelv---------F~g--------------------------------------se~~K-~lA~rq~v~~g~~PP 389 (593)
T KOG0344|consen 358 NETVDQELV---------FCG--------------------------------------SEKGK-LLALRQLVASGFKPP 389 (593)
T ss_pred hhhhhhhhe---------eee--------------------------------------cchhH-HHHHHHHHhccCCCC
Confidence 000000000 000 00001 1122233322 3468
Q ss_pred eEEEecCHHHHHHHHHHhh-hcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHh
Q 001047 444 AIWFIFNRRGCDAAVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQ 522 (1174)
Q Consensus 444 ~IVF~~sr~~~~~la~~L~-~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~ 522 (1174)
++||+.+...|..+...|. -.++ .|++.||..++.+|+.+.+.|+
T Consensus 390 ~lIfVQs~eRak~L~~~L~~~~~i----------------------------------~v~vIh~e~~~~qrde~~~~FR 435 (593)
T KOG0344|consen 390 VLIFVQSKERAKQLFEELEIYDNI----------------------------------NVDVIHGERSQKQRDETMERFR 435 (593)
T ss_pred eEEEEecHHHHHHHHHHhhhccCc----------------------------------ceeeEecccchhHHHHHHHHHh
Confidence 9999999999999998884 1121 6999999999999999999999
Q ss_pred cCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 523 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 523 ~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
.|++.|||||+++++|+|+.+++.||+ ||.|.+..+|+||+||+||+| ..|++|.|++..+
T Consensus 436 ~g~IwvLicTdll~RGiDf~gvn~VIn--------yD~p~s~~syihrIGRtgRag--~~g~Aitfytd~d 496 (593)
T KOG0344|consen 436 IGKIWVLICTDLLARGIDFKGVNLVIN--------YDFPQSDLSYIHRIGRTGRAG--RSGKAITFYTDQD 496 (593)
T ss_pred ccCeeEEEehhhhhccccccCcceEEe--------cCCCchhHHHHHHhhccCCCC--CCcceEEEecccc
Confidence 999999999999999999999999999 999999999999999999999 8999999998744
No 58
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=3.7e-35 Score=348.46 Aligned_cols=395 Identities=26% Similarity=0.371 Sum_probs=282.6
Q ss_pred CCCHHHHHHH--HHHHcCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHHhCC--CeEEE
Q 001047 159 RIDKFQRSSI--EAFLRGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSNQKFREFRETFGD--NNVGL 233 (1174)
Q Consensus 159 ~~~~~Q~~ai--~~ll~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~g~--~~v~l 233 (1174)
.+..||.+++ +.++.+++.|.++||+.|||+++.+.++..+ -.++.++.+.|..+.+..+...+..++-+ ..|-.
T Consensus 223 ~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~ 302 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEE 302 (1008)
T ss_pred HHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcchh
Confidence 4778999998 4578889999999999999999999887654 46788999999999999988888775432 23433
Q ss_pred EeCCCC---CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHH-----CCCCc
Q 001047 234 LTGDSA---INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY-----CPKEV 305 (1174)
Q Consensus 234 ltGd~~---~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~-----l~~~~ 305 (1174)
+.|... ..+...+.|||.|+-..++.... ....+..++.||+||.|.++|.++|..+|.++.. ....+
T Consensus 303 y~g~~~p~~~~k~~sv~i~tiEkanslin~li----e~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~ 378 (1008)
T KOG0950|consen 303 YAGRFPPEKRRKRESVAIATIEKANSLINSLI----EQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSV 378 (1008)
T ss_pred hcccCCCCCcccceeeeeeehHhhHhHHHHHH----hcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccce
Confidence 444432 33467899999996544332211 2445778999999999999999999999988653 23457
Q ss_pred cEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccC
Q 001047 306 QIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385 (1174)
Q Consensus 306 qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 385 (1174)
|+|+||||++|...+..|+. ..+..+.+||+|+..++..+..++..- ... .-+.+..-|..
T Consensus 379 ~iIGMSATi~N~~lL~~~L~-----A~~y~t~fRPv~L~E~ik~G~~i~~~~--r~~-~lr~ia~l~~~----------- 439 (1008)
T KOG0950|consen 379 QIIGMSATIPNNSLLQDWLD-----AFVYTTRFRPVPLKEYIKPGSLIYESS--RNK-VLREIANLYSS----------- 439 (1008)
T ss_pred eEeeeecccCChHHHHHHhh-----hhheecccCcccchhccCCCcccccch--hhH-HHHHhhhhhhh-----------
Confidence 89999999999999999998 678888899999998876554333210 000 00000000000
Q ss_pred CCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcC
Q 001047 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465 (1174)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~ 465 (1174)
..+..+ .+.+..+..... .++..+||||++++.|+.+|..+...-
T Consensus 440 ---------~~g~~d-------------------------pD~~v~L~tet~-~e~~~~lvfc~sk~~ce~~a~~~~~~v 484 (1008)
T KOG0950|consen 440 ---------NLGDED-------------------------PDHLVGLCTETA-PEGSSVLVFCPSKKNCENVASLIAKKV 484 (1008)
T ss_pred ---------hcccCC-------------------------Ccceeeehhhhh-hcCCeEEEEcCcccchHHHHHHHHHHh
Confidence 000000 001111111111 234579999999999999986654211
Q ss_pred C---CCHHhHH-HHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCc
Q 001047 466 L---LDECEMS-EVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM 541 (1174)
Q Consensus 466 ~---~~~~e~~-~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDi 541 (1174)
. ....... .-...........|...+..+...+..|+++||+|++.++|+.|+..|++|.+.|++||+|++.|+|.
T Consensus 485 pk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNL 564 (1008)
T KOG0950|consen 485 PKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNL 564 (1008)
T ss_pred hHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcC
Confidence 0 0000000 00011122233455556666777889999999999999999999999999999999999999999999
Q ss_pred CCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhhCCCcceeeeeccc
Q 001047 542 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTAS 616 (1174)
Q Consensus 542 P~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~~~~~pl~S~f~~~ 616 (1174)
|++.|+|..+. + +...++..+|.||+|||||+|.|+.|.+|+++.+.+.. .+..++..+.+|+.|.+...
T Consensus 565 PArRVIiraP~-~---g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~-~~~~lv~~~~~~~~S~l~~e 634 (1008)
T KOG0950|consen 565 PARRVIIRAPY-V---GREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKK-RVRELVNSPLKPLNSCLSNE 634 (1008)
T ss_pred CcceeEEeCCc-c---ccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchh-HHHHHHhccccccccccccc
Confidence 99999998542 2 34568899999999999999999999999999887643 45699999999999998543
No 59
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=2.1e-35 Score=333.52 Aligned_cols=329 Identities=21% Similarity=0.220 Sum_probs=258.0
Q ss_pred ChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHH
Q 001047 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 148 ~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
.+..++....-.|+++|..|||+++.+-|+||+|..|+|||++|...+++.+.. ...++|++|||+++.|+...+.+
T Consensus 36 vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~ 115 (980)
T KOG4284|consen 36 VLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRK 115 (980)
T ss_pred HHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHH
Confidence 334455545557999999999999999999999999999999999998888753 45899999999999999999887
Q ss_pred H---hCCCeEEEEeCCCCCC------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccccc-CCcHHHH
Q 001047 225 T---FGDNNVGLLTGDSAIN------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD-ISRGTVW 294 (1174)
Q Consensus 225 ~---~g~~~v~lltGd~~~~------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d-~~~g~~~ 294 (1174)
. |.+..+..+.|++... ..++|+|+|||++..+... +.....+++++|+|||+.|.+ ..|...+
T Consensus 116 v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el------~~~n~s~vrlfVLDEADkL~~t~sfq~~I 189 (980)
T KOG4284|consen 116 VAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVEL------GAMNMSHVRLFVLDEADKLMDTESFQDDI 189 (980)
T ss_pred hcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHh------cCCCccceeEEEeccHHhhhchhhHHHHH
Confidence 4 4456788888887654 4689999999999988775 456788999999999999987 5899999
Q ss_pred HHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCcccc---EEeecccccccccccccccccchhhhhh
Q 001047 295 EEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPL---TWYFSTKTALLPLLDEKGKHMNRKLSLN 371 (1174)
Q Consensus 295 e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl---~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 371 (1174)
..|+..+|...|++++|||-+ +-+.+.|........++.-..+.+-| .+|+..... .+
T Consensus 190 n~ii~slP~~rQv~a~SATYp--~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s-----------~n------ 250 (980)
T KOG4284|consen 190 NIIINSLPQIRQVAAFSATYP--RNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCS-----------PN------ 250 (980)
T ss_pred HHHHHhcchhheeeEEeccCc--hhHHHHHHHHhcccceeecccCCceeechhheeeeccC-----------Cc------
Confidence 999999999999999999987 33444444333333444333332211 111110000 00
Q ss_pred hhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHh-CCCCCeEEEecC
Q 001047 372 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS-RDMLPAIWFIFN 450 (1174)
Q Consensus 372 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~IVF~~s 450 (1174)
.+-. ......+.|.++.+ -+..++||||..
T Consensus 251 -----------------------------------------nsve--------emrlklq~L~~vf~~ipy~QAlVF~~~ 281 (980)
T KOG4284|consen 251 -----------------------------------------NSVE--------EMRLKLQKLTHVFKSIPYVQALVFCDQ 281 (980)
T ss_pred -----------------------------------------chHH--------HHHHHHHHHHHHHhhCchHHHHhhhhh
Confidence 0000 00112233333332 356789999999
Q ss_pred HHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEE
Q 001047 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVF 530 (1174)
Q Consensus 451 r~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLV 530 (1174)
...|+.++.+|...|+ .+.++.|.|++.+|..++..++.-.++|||
T Consensus 282 ~sra~~~a~~L~ssG~----------------------------------d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILV 327 (980)
T KOG4284|consen 282 ISRAEPIATHLKSSGL----------------------------------DVTFISGAMSQKDRLLAVDQLRAFRVRILV 327 (980)
T ss_pred hhhhhHHHHHhhccCC----------------------------------CeEEeccccchhHHHHHHHHhhhceEEEEE
Confidence 9999999999998887 688899999999999999999999999999
Q ss_pred echhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCC
Q 001047 531 ATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 594 (1174)
Q Consensus 531 AT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~ 594 (1174)
+|+..++|||-|.+++||+ -+.|.+-..|.||+|||||.| ..|.+|.++.....
T Consensus 328 sTDLtaRGIDa~~vNLVVN--------iD~p~d~eTY~HRIGRAgRFG--~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 328 STDLTARGIDADNVNLVVN--------IDAPADEETYFHRIGRAGRFG--AHGAAVTLLEDERE 381 (980)
T ss_pred ecchhhccCCccccceEEe--------cCCCcchHHHHHHhhhccccc--ccceeEEEeccchh
Confidence 9999999999999999999 899999999999999999999 89999988766554
No 60
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.9e-34 Score=337.48 Aligned_cols=312 Identities=21% Similarity=0.308 Sum_probs=237.9
Q ss_pred HHhhcCCC-CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCC
Q 001047 151 ELASIYDF-RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDN 229 (1174)
Q Consensus 151 ~l~~~~~~-~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~ 229 (1174)
.++..|++ .+++-|.++|..+++|+++++.+|||+||++||++|++-. .+-+|||+|..+|+..+.+.+.. .| +
T Consensus 8 ~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---~G~TLVVSPLiSLM~DQV~~l~~-~G-i 82 (590)
T COG0514 8 VLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---EGLTLVVSPLISLMKDQVDQLEA-AG-I 82 (590)
T ss_pred HHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---CCCEEEECchHHHHHHHHHHHHH-cC-c
Confidence 46666665 4999999999999999999999999999999999998754 55899999999999999999998 44 5
Q ss_pred eEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccC--CcHHHHHH
Q 001047 230 NVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI--SRGTVWEE 296 (1174)
Q Consensus 230 ~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~--~~g~~~e~ 296 (1174)
.+..+.+..+. ....++++-+||+|.+--.. ....-..+.++||||||++++| +|++.+..
T Consensus 83 ~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~------~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~ 156 (590)
T COG0514 83 RAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL------ELLKRLPISLVAIDEAHCISQWGHDFRPDYRR 156 (590)
T ss_pred eeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH------HHHHhCCCceEEechHHHHhhcCCccCHhHHH
Confidence 56655554332 13578999999987643211 1111347899999999999998 48888887
Q ss_pred HHH---HCCCCccEEEEccccCC--hHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhh
Q 001047 297 III---YCPKEVQIICLSATVAN--ADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 371 (1174)
Q Consensus 297 ii~---~l~~~~qiI~LSATl~n--~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 371 (1174)
+-. .+| ++++++||||-+. ..++..-|+... ...++.+..||.- ++. +.... +.
T Consensus 157 lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~-~~~~~~sfdRpNi---~~~--------v~~~~---~~----- 215 (590)
T COG0514 157 LGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQD-ANIFRGSFDRPNL---ALK--------VVEKG---EP----- 215 (590)
T ss_pred HHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCC-cceEEecCCCchh---hhh--------hhhcc---cH-----
Confidence 743 445 7899999999754 245555554321 1233333344310 000 00000 00
Q ss_pred hhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCH
Q 001047 372 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451 (1174)
Q Consensus 372 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr 451 (1174)
..... .+.........+.||||.||
T Consensus 216 ------------------------------------------------------~~q~~-fi~~~~~~~~~~GIIYc~sR 240 (590)
T COG0514 216 ------------------------------------------------------SDQLA-FLATVLPQLSKSGIIYCLTR 240 (590)
T ss_pred ------------------------------------------------------HHHHH-HHHhhccccCCCeEEEEeeH
Confidence 00001 12212234556899999999
Q ss_pred HHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEe
Q 001047 452 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA 531 (1174)
Q Consensus 452 ~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVA 531 (1174)
+.|+.+++.|...|+ .+++|||||+..+|+.+++.|..+.++|+||
T Consensus 241 k~~E~ia~~L~~~g~----------------------------------~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVA 286 (590)
T COG0514 241 KKVEELAEWLRKNGI----------------------------------SAGAYHAGLSNEERERVQQAFLNDEIKVMVA 286 (590)
T ss_pred HhHHHHHHHHHHCCC----------------------------------ceEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 999999999997776 6899999999999999999999999999999
Q ss_pred chhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 532 TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 532 T~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
|.+|+||||.|++++||| ++.|.|..+|.|-+|||||.| ....|++++++.+
T Consensus 287 T~AFGMGIdKpdVRfViH--------~~lP~s~EsYyQE~GRAGRDG--~~a~aill~~~~D 338 (590)
T COG0514 287 TNAFGMGIDKPDVRFVIH--------YDLPGSIESYYQETGRAGRDG--LPAEAILLYSPED 338 (590)
T ss_pred eccccCccCCCCceEEEE--------ecCCCCHHHHHHHHhhccCCC--CcceEEEeecccc
Confidence 999999999999999999 999999999999999999999 7899999998765
No 61
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-35 Score=351.35 Aligned_cols=338 Identities=22% Similarity=0.269 Sum_probs=263.4
Q ss_pred HHHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh--------cCCeEEE
Q 001047 136 CNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA--------NQRRIFY 207 (1174)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~--------~g~rvlv 207 (1174)
+..+...+++...+..++++.+-+++|+|.+|||+|+.|++||.+|.||||||+.|.+|++.++. .|+.++|
T Consensus 364 v~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li 443 (997)
T KOG0334|consen 364 VTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALI 443 (997)
T ss_pred cchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEE
Confidence 45566667777777888888888999999999999999999999999999999999999997764 4779999
Q ss_pred EcccHHHHHHHHHHHHHHhC--CCeEEEEeCCCCC-------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEE
Q 001047 208 TTPLKALSNQKFREFRETFG--DNNVGLLTGDSAI-------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIV 278 (1174)
Q Consensus 208 l~PtraLa~Q~~~~l~~~~g--~~~v~lltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVI 278 (1174)
++||++|+.|+++++..+.. ++.+..+.|+..+ .+.+.|+||||++..+++-.+.+. -..+.++.+||
T Consensus 444 ~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~gr---vtnlrR~t~lv 520 (997)
T KOG0334|consen 444 LAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGR---VTNLRRVTYLV 520 (997)
T ss_pred EcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCc---cccccccceee
Confidence 99999999999999887542 3456666666543 357999999999999999876654 33567788999
Q ss_pred EccccccccCCcHHHHHHHHHHCCCCccEEEEccccCCh-HHHHHHHhcccCceeeecCCCCccccEEeecccccccccc
Q 001047 279 LDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA-DELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLL 357 (1174)
Q Consensus 279 iDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~-~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~ 357 (1174)
+||||+|.|..|.+..-.|+..+++..|++++|||.++. +.++.-+.. .++.++.. .+. .+
T Consensus 521 ~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~--~Pveiiv~-~~s-----------vV---- 582 (997)
T KOG0334|consen 521 LDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLK--KPVEIIVG-GRS-----------VV---- 582 (997)
T ss_pred echhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhc--CCeeEEEc-cce-----------eE----
Confidence 999999999999998888999999999999999999854 344433322 22221111 110 00
Q ss_pred cccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHH
Q 001047 358 DEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437 (1174)
Q Consensus 358 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 437 (1174)
...+.+.... . .+.......+..+|....
T Consensus 583 -------~k~V~q~v~V---------------------------------------~-----~~e~eKf~kL~eLl~e~~ 611 (997)
T KOG0334|consen 583 -------CKEVTQVVRV---------------------------------------C-----AIENEKFLKLLELLGERY 611 (997)
T ss_pred -------eccceEEEEE---------------------------------------e-----cCchHHHHHHHHHHHHHh
Confidence 0000000000 0 000011222333444333
Q ss_pred hCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHH
Q 001047 438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 517 (1174)
Q Consensus 438 ~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v 517 (1174)
+.+++||||.+...|+.+...|.+.|+. +..+|||.++.+|..+
T Consensus 612 --e~~~tiiFv~~qe~~d~l~~~L~~ag~~----------------------------------~~slHGgv~q~dR~st 655 (997)
T KOG0334|consen 612 --EDGKTIIFVDKQEKADALLRDLQKAGYN----------------------------------CDSLHGGVDQHDRSST 655 (997)
T ss_pred --hcCCEEEEEcCchHHHHHHHHHHhcCcc----------------------------------hhhhcCCCchHHHHhH
Confidence 3579999999999999999999877762 3348999999999999
Q ss_pred HHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 518 EELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 518 ~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
++.|++|.+++||||+++++|+|++...+||+ |+.|.....|+||+||+||+| ..|.|++|.++
T Consensus 656 i~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn--------yd~pnh~edyvhR~gRTgrag--rkg~AvtFi~p 719 (997)
T KOG0334|consen 656 IEDFKNGVVNLLVATSVVARGLDVKELILVVN--------YDFPNHYEDYVHRVGRTGRAG--RKGAAVTFITP 719 (997)
T ss_pred HHHHhccCceEEEehhhhhcccccccceEEEE--------cccchhHHHHHHHhcccccCC--ccceeEEEeCh
Confidence 99999999999999999999999999999999 999999999999999999999 89999999988
No 62
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-34 Score=308.03 Aligned_cols=333 Identities=20% Similarity=0.243 Sum_probs=253.8
Q ss_pred HHHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEcccH
Q 001047 136 CNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPLK 212 (1174)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~Ptr 212 (1174)
..+|.+.++....+..+-..+.-+|+.+|+.||..+..|.|+++.+.+|+|||.+|..++++.+.- ...+++++|++
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtr 104 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTR 104 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchH
Confidence 345555555443333333333335999999999999999999999999999999999999988743 34799999999
Q ss_pred HHHHHHHHHHHHHhC--CCeEEEEeCCCCCC--------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccc
Q 001047 213 ALSNQKFREFRETFG--DNNVGLLTGDSAIN--------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEV 282 (1174)
Q Consensus 213 aLa~Q~~~~l~~~~g--~~~v~lltGd~~~~--------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEa 282 (1174)
+|+.|+.+.....+. +..+..+.|+.... ..++|+|+||++...|+.. .......+.++|+|||
T Consensus 105 eLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~------~~l~~~~iKmfvlDEa 178 (397)
T KOG0327|consen 105 ELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR------GSLSTDGIKMFVLDEA 178 (397)
T ss_pred HHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc------ccccccceeEEeecch
Confidence 999999977776433 33555566655432 2479999999999999976 3445667999999999
Q ss_pred cccccCCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccc
Q 001047 283 HYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKG 361 (1174)
Q Consensus 283 H~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~ 361 (1174)
+.|...+|...++.++.++|+++|++++|||++. ..+++.-+. ..|+........
T Consensus 179 DEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~--------------~~pv~i~vkk~~---------- 234 (397)
T KOG0327|consen 179 DEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFM--------------REPVRILVKKDE---------- 234 (397)
T ss_pred HhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhc--------------cCceEEEecchh----------
Confidence 9999999999999999999999999999999984 233332221 112221111000
Q ss_pred cccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCC
Q 001047 362 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441 (1174)
Q Consensus 362 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 441 (1174)
+.+.++ +.|... ...+....++..+.. ..
T Consensus 235 ------ltl~gi-------kq~~i~-------------------------------------v~k~~k~~~l~dl~~-~~ 263 (397)
T KOG0327|consen 235 ------LTLEGI-------KQFYIN-------------------------------------VEKEEKLDTLCDLYR-RV 263 (397)
T ss_pred ------hhhhhe-------eeeeee-------------------------------------ccccccccHHHHHHH-hh
Confidence 001111 000000 001113445566665 66
Q ss_pred CCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHH
Q 001047 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 521 (1174)
Q Consensus 442 ~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F 521 (1174)
.++++||++++.++.+...|...++ .+.+.|+.|.+.+|..+...|
T Consensus 264 ~q~~if~nt~r~v~~l~~~L~~~~~----------------------------------~~s~~~~d~~q~~R~~~~~ef 309 (397)
T KOG0327|consen 264 TQAVIFCNTRRKVDNLTDKLRAHGF----------------------------------TVSAIHGDMEQNERDTLMREF 309 (397)
T ss_pred hcceEEecchhhHHHHHHHHhhCCc----------------------------------eEEEeecccchhhhhHHHHHh
Confidence 7899999999999999998876665 688999999999999999999
Q ss_pred hcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 522 QRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 522 ~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
+.|..+|||.|+.+++|+|+..+..||+ |+.|....+|+||+||+||.| ..|.++.+++..+
T Consensus 310 ~~gssrvlIttdl~argidv~~~slvin--------ydlP~~~~~yihR~gr~gr~g--rkg~~in~v~~~d 371 (397)
T KOG0327|consen 310 RSGSSRVLITTDLLARGIDVQQVSLVVN--------YDLPARKENYIHRIGRAGRFG--RKGVAINFVTEED 371 (397)
T ss_pred hcCCceEEeeccccccccchhhcceeee--------eccccchhhhhhhcccccccC--CCceeeeeehHhh
Confidence 9999999999999999999999999999 999999999999999999999 8999998887643
No 63
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=5.8e-33 Score=339.58 Aligned_cols=319 Identities=18% Similarity=0.177 Sum_probs=211.1
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHcCC-cEEEEccCCcchHHHHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHH
Q 001047 150 DELASIYDFRIDKFQRSSIEAFLRGS-SVVVSAPTSSGKTLIAEAAAVATVA---NQRRIFYTTPLKALSNQKFREFRET 225 (1174)
Q Consensus 150 ~~l~~~~~~~~~~~Q~~ai~~ll~g~-~vlv~apTGsGKTlv~~~~il~~l~---~g~rvlvl~PtraLa~Q~~~~l~~~ 225 (1174)
+.|+...+|+|+|||.++++.++.|+ ++++.+|||||||.++.++.+.... ..++++|++|||+|++|+++.+.++
T Consensus 6 ~ff~~~~G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~ 85 (844)
T TIGR02621 6 EWYQGLHGYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKI 85 (844)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHH
Confidence 34667778889999999999999998 6778899999999966544442211 2336777889999999999998874
Q ss_pred hC-------------------------CCeEEEEeCCCCCC-------CCCcEEEEcHHHHHHHHh-ccccc--cc---C
Q 001047 226 FG-------------------------DNNVGLLTGDSAIN-------REAQILIMTTEILRNMLY-QSVGM--VS---S 267 (1174)
Q Consensus 226 ~g-------------------------~~~v~lltGd~~~~-------~~~~IlV~Tpe~L~~~L~-~~~~~--~~---~ 267 (1174)
.. .+++..++|+...+ ..++|+|+|++.+.+-.. ++.+. .. .
T Consensus 86 ~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ 165 (844)
T TIGR02621 86 GERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLH 165 (844)
T ss_pred HHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccch
Confidence 32 25678888987654 468999999654432111 00000 00 0
Q ss_pred CCCCCceeEEEEccccccccCCcHHHHHHHHHHC--CCC---ccEEEEccccCC-hHHHHHHHhcccCceeeecCCCCcc
Q 001047 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC--PKE---VQIICLSATVAN-ADELAGWIGQIHGKTELITSSRRPV 341 (1174)
Q Consensus 268 ~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l--~~~---~qiI~LSATl~n-~~~~~~~l~~~~~~~~~i~~~~rpv 341 (1174)
...+.++.+||||||| ++..|...++.|+..+ ++. .|+++||||++. ...+...+.. .+........+ .
T Consensus 166 ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~--~p~~i~V~~~~-l 240 (844)
T TIGR02621 166 AGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSA--EDYKHPVLKKR-L 240 (844)
T ss_pred hhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHcc--CCceeeccccc-c
Confidence 1126789999999999 5678999999999864 432 699999999974 2233322221 11000000000 0
Q ss_pred ccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhh
Q 001047 342 PLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 421 (1174)
Q Consensus 342 pl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 421 (1174)
.. .++ ..++ . ....
T Consensus 241 ~a----------------------~ki-~q~v----------~----------------------------v~~e----- 254 (844)
T TIGR02621 241 AA----------------------KKI-VKLV----------P----------------------------PSDE----- 254 (844)
T ss_pred cc----------------------cce-EEEE----------e----------------------------cChH-----
Confidence 00 000 0000 0 0000
Q ss_pred hhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccc
Q 001047 422 RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKG 501 (1174)
Q Consensus 422 ~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~g 501 (1174)
.........+..+.....+++||||+|++.|+.+++.|.+. +
T Consensus 255 --~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~------------------------------------g 296 (844)
T TIGR02621 255 --KFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE------------------------------------K 296 (844)
T ss_pred --HHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc------------------------------------C
Confidence 00111122223333345678999999999999999998643 3
Q ss_pred eeEecCCCCHHHHH-----HHHHHHhc----CC-------ceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHH
Q 001047 502 VAAHHAGCLPIWKS-----FIEELFQR----GL-------VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSN 565 (1174)
Q Consensus 502 v~~~Hsgl~~~~R~-----~v~~~F~~----G~-------ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~ 565 (1174)
+..+||+|++.+|. .+++.|++ |. .+|||||+++++||||+. ++||+ +..| ..
T Consensus 297 ~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~--------d~aP--~e 365 (844)
T TIGR02621 297 FELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC--------DLAP--FE 365 (844)
T ss_pred CeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEE--------CCCC--HH
Confidence 47799999999999 78899987 54 789999999999999998 67777 3433 58
Q ss_pred HHHHhhcccCCCCCCCccEEEEE
Q 001047 566 ELFQMAGRAGRRGIDNRGHVVLV 588 (1174)
Q Consensus 566 ~y~Qr~GRAGR~G~d~~G~~ill 588 (1174)
.|+||+||+||.|....+.++++
T Consensus 366 syIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 366 SMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred HHHHHhcccCCCCCCCCceEEEE
Confidence 99999999999995444433444
No 64
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=6.4e-33 Score=338.52 Aligned_cols=313 Identities=18% Similarity=0.221 Sum_probs=217.3
Q ss_pred HHHHHHHHHHcCCcEEEEccCCcchHHHH---------HHHHHHHH---h---cCCeEEEEcccHHHHHHHHHHHHHHhC
Q 001047 163 FQRSSIEAFLRGSSVVVSAPTSSGKTLIA---------EAAAVATV---A---NQRRIFYTTPLKALSNQKFREFRETFG 227 (1174)
Q Consensus 163 ~Q~~ai~~ll~g~~vlv~apTGsGKTlv~---------~~~il~~l---~---~g~rvlvl~PtraLa~Q~~~~l~~~~g 227 (1174)
+|.++++.+++|+++|++|+||||||.+. +++.+..+ . .+.+++|++||++|+.|+..++.+..|
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999983 33333333 2 346899999999999999999987554
Q ss_pred C-----CeEEEEeCCCCC------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHH
Q 001047 228 D-----NNVGLLTGDSAI------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEE 296 (1174)
Q Consensus 228 ~-----~~v~lltGd~~~------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ 296 (1174)
. ..+.+..|+... ....+|+|+|++.. ...+.++++|||||||.+... +..+..
T Consensus 248 ~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~-------------l~~L~~v~~VVIDEaHEr~~~--~DllL~ 312 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT-------------LNKLFDYGTVIIDEVHEHDQI--GDIIIA 312 (675)
T ss_pred ccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc-------------ccccccCCEEEccccccCccc--hhHHHH
Confidence 3 356677777642 12468999997521 224778999999999999754 345555
Q ss_pred HHHHC-CCCccEEEEccccC-ChHHHHHHHhcccCceeeecCCCCc-cccEEeecccccccccccccccccchhhhhhhh
Q 001047 297 IIIYC-PKEVQIICLSATVA-NADELAGWIGQIHGKTELITSSRRP-VPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYL 373 (1174)
Q Consensus 297 ii~~l-~~~~qiI~LSATl~-n~~~~~~~l~~~~~~~~~i~~~~rp-vpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 373 (1174)
++... +...|+++||||++ +.+.+..|+.. +..+....+. .|+.+++..... .......++
T Consensus 313 llk~~~~~~rq~ILmSATl~~dv~~l~~~~~~----p~~I~I~grt~~pV~~~yi~~~~------------~~~~~~~y~ 376 (675)
T PHA02653 313 VARKHIDKIRSLFLMTATLEDDRDRIKEFFPN----PAFVHIPGGTLFPISEVYVKNKY------------NPKNKRAYI 376 (675)
T ss_pred HHHHhhhhcCEEEEEccCCcHhHHHHHHHhcC----CcEEEeCCCcCCCeEEEEeecCc------------ccccchhhh
Confidence 55444 33458999999997 35677777752 3334444443 566655432110 000000000
Q ss_pred hcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHH
Q 001047 374 QLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453 (1174)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~ 453 (1174)
. .....+...+........+.+|||++++.+
T Consensus 377 ~-------------------------------------------------~~k~~~l~~L~~~~~~~~g~iLVFlpg~~e 407 (675)
T PHA02653 377 E-------------------------------------------------EEKKNIVTALKKYTPPKGSSGIVFVASVSQ 407 (675)
T ss_pred H-------------------------------------------------HHHHHHHHHHHHhhcccCCcEEEEECcHHH
Confidence 0 000112222222222344689999999999
Q ss_pred HHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHH-hcCCceEEEec
Q 001047 454 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF-QRGLVKVVFAT 532 (1174)
Q Consensus 454 ~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F-~~G~ikVLVAT 532 (1174)
|+.+++.|....- ...+.++||+|++. +.+++.| ++|..+|||||
T Consensus 408 i~~l~~~L~~~~~--------------------------------~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVAT 453 (675)
T PHA02653 408 CEEYKKYLEKRLP--------------------------------IYDFYIIHGKVPNI--DEILEKVYSSKNPSIIIST 453 (675)
T ss_pred HHHHHHHHHhhcC--------------------------------CceEEeccCCcCHH--HHHHHHHhccCceeEEecc
Confidence 9999998874310 01588999999975 4555666 78999999999
Q ss_pred hhhhhcCCcCCceEEEecccc-----cCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 533 ETLAAGINMPARTAVLSSLSK-----RTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 533 ~tla~GIDiP~v~vVI~~~~k-----~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
+++++|||+|++++||+++.. +.| ...|.|.++|.||+|||||. ..|.|+.++++.+
T Consensus 454 dIAERGIDIp~V~~VID~G~~k~p~~~~g-~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~ 515 (675)
T PHA02653 454 PYLESSVTIRNATHVYDTGRVYVPEPFGG-KEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDL 515 (675)
T ss_pred ChhhccccccCeeEEEECCCccCCCcccC-cccccCHHHHHHhccCcCCC---CCCeEEEEECHHH
Confidence 999999999999999997621 122 24578999999999999999 4899999997754
No 65
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-32 Score=307.81 Aligned_cols=392 Identities=17% Similarity=0.213 Sum_probs=249.3
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHHHhCC--CeEEEEe
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN-QRRIFYTTPLKALSNQKFREFRETFGD--NNVGLLT 235 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~-g~rvlvl~PtraLa~Q~~~~l~~~~g~--~~v~llt 235 (1174)
+++.||.......+.+ |.+|+.|||-|||+++.+.+...+.. ++++|+++|||.|+.|.++.+.+.+|- ..++.+|
T Consensus 15 e~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~lt 93 (542)
T COG1111 15 EPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALT 93 (542)
T ss_pred cHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeec
Confidence 6888999988887775 99999999999999999999877764 447999999999999999999998764 5788999
Q ss_pred CCCCCC------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEE
Q 001047 236 GDSAIN------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIIC 309 (1174)
Q Consensus 236 Gd~~~~------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~ 309 (1174)
|....+ ...+|+|+||+.+.|-|.. +...+.++.+|||||||+-....-...+.+......+++.+++
T Consensus 94 Gev~p~~R~~~w~~~kVfvaTPQvveNDl~~------Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilg 167 (542)
T COG1111 94 GEVRPEEREELWAKKKVFVATPQVVENDLKA------GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILG 167 (542)
T ss_pred CCCChHHHHHHHhhCCEEEeccHHHHhHHhc------CccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEE
Confidence 998755 3789999999999988876 5778899999999999998765444444444555567889999
Q ss_pred EccccCC-hHHHHHHHhcccCceeeecCCCCc--------cccEEeecccc-cccccccccccccchhhh----hhhhhc
Q 001047 310 LSATVAN-ADELAGWIGQIHGKTELITSSRRP--------VPLTWYFSTKT-ALLPLLDEKGKHMNRKLS----LNYLQL 375 (1174)
Q Consensus 310 LSATl~n-~~~~~~~l~~~~~~~~~i~~~~rp--------vpl~~~~~~~~-~~~~~~~~~~~~~~~~l~----~~~l~~ 375 (1174)
|||||++ .+.+.+-+...+-.-..+.++.-+ +.+.|.-..-. .+..+.+.-...+.+.+. ..++..
T Consensus 168 LTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~ 247 (542)
T COG1111 168 LTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIES 247 (542)
T ss_pred EecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 9999985 466666666554332333333221 11111110000 000000000000000000 000000
Q ss_pred cc-------------ccCC-CccCCCccccc--------c-------ccc--------------cCCC--CCcccccccc
Q 001047 376 ST-------------SEVK-PYKDGGSRRRN--------S-------RKH--------------ADMN--SNNIVTSFGQ 410 (1174)
Q Consensus 376 ~~-------------~~~~-~~~~~~~~~~~--------~-------~~~--------------~~~~--~~~~~~~~~~ 410 (1174)
.. .... ........+.- . ..+ .... +.........
T Consensus 248 ~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d 327 (542)
T COG1111 248 SSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLAD 327 (542)
T ss_pred cCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcC
Confidence 00 0000 00000000000 0 000 0000 0000000000
Q ss_pred cccchhh--hhhhh-----hcCchhHHHHHHHHH-hCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHH
Q 001047 411 HQLSKNS--INAIR-----RSQVPQVIDTLWHLR-SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF 482 (1174)
Q Consensus 411 ~~l~~~~--~~~~~-----~~~~~~~~~~l~~l~-~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~ 482 (1174)
..+.... ..... ....+.+.+++.... ..+..++|||++.|..++.++.+|...+....
T Consensus 328 ~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~------------- 394 (542)
T COG1111 328 PYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR------------- 394 (542)
T ss_pred hhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce-------------
Confidence 0000000 00000 012233444444433 34557899999999999999999987664110
Q ss_pred HhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCcccc
Q 001047 483 RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562 (1174)
Q Consensus 483 ~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~ 562 (1174)
...++.+-.-+..||++.++..+++.|++|.++|||||++.++|+|+|++++||. |++..
T Consensus 395 ------------~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif--------YEpvp 454 (542)
T COG1111 395 ------------VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF--------YEPVP 454 (542)
T ss_pred ------------eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE--------ecCCc
Confidence 0112223334558999999999999999999999999999999999999999999 88888
Q ss_pred CHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 563 s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
|+..++||.||+||. ..|.++++.+...
T Consensus 455 SeIR~IQR~GRTGR~---r~Grv~vLvt~gt 482 (542)
T COG1111 455 SEIRSIQRKGRTGRK---RKGRVVVLVTEGT 482 (542)
T ss_pred HHHHHHHhhCccccC---CCCeEEEEEecCc
Confidence 999999999999997 6899998887763
No 66
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-34 Score=309.28 Aligned_cols=341 Identities=17% Similarity=0.200 Sum_probs=261.2
Q ss_pred HHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcC----CeEEEEcccH
Q 001047 137 NEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ----RRIFYTTPLK 212 (1174)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g----~rvlvl~Ptr 212 (1174)
..|..+++......++.+...-.|+|+|++.+|.++.+++++..|.||||||.+|.+|+++.+... .|+++++||+
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsptr 100 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTR 100 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcH
Confidence 456677777777777777777789999999999999999999999999999999999999998754 4999999999
Q ss_pred HHHHHHHHHHHHHh--CCCeEEEEeCCCC-------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccc
Q 001047 213 ALSNQKFREFRETF--GDNNVGLLTGDSA-------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283 (1174)
Q Consensus 213 aLa~Q~~~~l~~~~--g~~~v~lltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH 283 (1174)
+|+.|..+.++..- .+....++.|+.+ ++.+++||++||+++..+.-. -...|+.+.+||+||++
T Consensus 101 eLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve------m~l~l~sveyVVfdEad 174 (529)
T KOG0337|consen 101 ELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE------MTLTLSSVEYVVFDEAD 174 (529)
T ss_pred HHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh------eeccccceeeeeehhhh
Confidence 99999998888732 2344454444333 457899999999999876543 24568899999999999
Q ss_pred ccccCCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccc
Q 001047 284 YLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKH 363 (1174)
Q Consensus 284 ~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~ 363 (1174)
.+.+++|...+.+++..+|.+.|.++||||+|+ .+.++-..--.+ |+...+.. ...
T Consensus 175 rlfemgfqeql~e~l~rl~~~~QTllfSatlp~--~lv~fakaGl~~-----------p~lVRldv-----------etk 230 (529)
T KOG0337|consen 175 RLFEMGFQEQLHEILSRLPESRQTLLFSATLPR--DLVDFAKAGLVP-----------PVLVRLDV-----------ETK 230 (529)
T ss_pred HHHhhhhHHHHHHHHHhCCCcceEEEEeccCch--hhHHHHHccCCC-----------CceEEeeh-----------hhh
Confidence 999999999999999999999999999999984 333333221001 11111100 111
Q ss_pred cchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhC--CC
Q 001047 364 MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR--DM 441 (1174)
Q Consensus 364 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~--~~ 441 (1174)
++..+...+.. .........|..+... ..
T Consensus 231 ise~lk~~f~~-------------------------------------------------~~~a~K~aaLl~il~~~~~~ 261 (529)
T KOG0337|consen 231 ISELLKVRFFR-------------------------------------------------VRKAEKEAALLSILGGRIKD 261 (529)
T ss_pred cchhhhhheee-------------------------------------------------eccHHHHHHHHHHHhccccc
Confidence 22222111110 0011112222222222 23
Q ss_pred CCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHH
Q 001047 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 521 (1174)
Q Consensus 442 ~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F 521 (1174)
.++|||+.++.+++.+...|..+|+ ++..++|.|.+.-|..-...|
T Consensus 262 ~~t~vf~~tk~hve~~~~ll~~~g~----------------------------------~~s~iysslD~~aRk~~~~~F 307 (529)
T KOG0337|consen 262 KQTIVFVATKHHVEYVRGLLRDFGG----------------------------------EGSDIYSSLDQEARKINGRDF 307 (529)
T ss_pred cceeEEecccchHHHHHHHHHhcCC----------------------------------CccccccccChHhhhhccccc
Confidence 4799999999999999999987776 677789999999999999999
Q ss_pred hcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHH
Q 001047 522 QRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 601 (1174)
Q Consensus 522 ~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~ 601 (1174)
..++..+||.|+++++|+|+|-...||+ |+.|....-|+||+||+.|+| ..|.+|-++.+.+.+. +.++
T Consensus 308 ~~~k~~~lvvTdvaaRG~diplldnvin--------yd~p~~~klFvhRVgr~arag--rtg~aYs~V~~~~~~y-l~DL 376 (529)
T KOG0337|consen 308 RGRKTSILVVTDVAARGLDIPLLDNVIN--------YDFPPDDKLFVHRVGRVARAG--RTGRAYSLVASTDDPY-LLDL 376 (529)
T ss_pred cCCccceEEEehhhhccCCCcccccccc--------ccCCCCCceEEEEecchhhcc--ccceEEEEEecccchh-hhhh
Confidence 9999999999999999999999999999 899999999999999999999 8899998887766553 4443
No 67
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=5.9e-32 Score=327.44 Aligned_cols=317 Identities=15% Similarity=0.146 Sum_probs=214.2
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCC-eEEEEcccHHHHHHHHHHHHHHhC--CCeEEE
Q 001047 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR-RIFYTTPLKALSNQKFREFRETFG--DNNVGL 233 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~-rvlvl~PtraLa~Q~~~~l~~~~g--~~~v~l 233 (1174)
.+.|+++|.+|++.++.+++.++++|||+|||+++...+...+..+. ++||++||++|+.|+.++|.++.. ...++.
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~ 191 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHK 191 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeE
Confidence 36899999999999999999999999999999987655444344444 999999999999999999998542 223444
Q ss_pred EeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEccc
Q 001047 234 LTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSAT 313 (1174)
Q Consensus 234 ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSAT 313 (1174)
+.|+.....+.+|+|+|++++.+.. ..++.++++||+||||++.. ..+..++..+++..++++||||
T Consensus 192 i~~g~~~~~~~~I~VaT~qsl~~~~---------~~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~~~~lGLTAT 258 (501)
T PHA02558 192 IYSGTAKDTDAPIVVSTWQSAVKQP---------KEWFDQFGMVIVDECHLFTG----KSLTSIITKLDNCKFKFGLTGS 258 (501)
T ss_pred EecCcccCCCCCEEEeeHHHHhhch---------hhhccccCEEEEEchhcccc----hhHHHHHHhhhccceEEEEecc
Confidence 4455554567899999999987643 22467899999999999874 3466777777777889999999
Q ss_pred cCChHH----HHHHHhcccCcee---eecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCC
Q 001047 314 VANADE----LAGWIGQIHGKTE---LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 386 (1174)
Q Consensus 314 l~n~~~----~~~~l~~~~~~~~---~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 386 (1174)
+.+... +..+++.....+. .+.. ...+++........ ++ .... ..+ ....|
T Consensus 259 p~~~~~~~~~~~~~fG~i~~~v~~~~li~~-g~l~~~~~~~v~~~--~~---------~~~~--~~~-----~~~~~--- 316 (501)
T PHA02558 259 LRDGKANILQYVGLFGDIFKPVTTSQLMEE-GQVTDLKINSIFLR--YP---------DEDR--VKL-----KGEDY--- 316 (501)
T ss_pred CCCccccHHHHHHhhCCceEEecHHHHHhC-CCcCCceEEEEecc--CC---------HHHh--hhh-----cccch---
Confidence 975321 2223321100000 0000 00001110000000 00 0000 000 00000
Q ss_pred CccccccccccCCCCCcccccccccccchhhhhhhhh--cCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhc
Q 001047 387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR--SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC 464 (1174)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~ 464 (1174)
. .....+.. .....+...+..+. ..+.+++||+.+.++|+.+++.|...
T Consensus 317 ---------------------------~-~~~~~l~~~~~Rn~~I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~~ 367 (501)
T PHA02558 317 ---------------------------Q-EEIKYITSHTKRNKWIANLALKLA-KKGENTFVMFKYVEHGKPLYEMLKKV 367 (501)
T ss_pred ---------------------------H-HHHHHHhccHHHHHHHHHHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHHc
Confidence 0 00000000 00112222333333 23467888889999999999999865
Q ss_pred CCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEec-hhhhhcCCcCC
Q 001047 465 NLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT-ETLAAGINMPA 543 (1174)
Q Consensus 465 ~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT-~tla~GIDiP~ 543 (1174)
+. .+..+||+|+..+|..+++.|++|...||||| +++++|+|+|.
T Consensus 368 g~----------------------------------~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ 413 (501)
T PHA02558 368 YD----------------------------------KVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKN 413 (501)
T ss_pred CC----------------------------------CEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccccc
Confidence 54 68899999999999999999999999999999 89999999999
Q ss_pred ceEEEecccccCCCCccccCHHHHHHhhcccCCCCC
Q 001047 544 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 579 (1174)
Q Consensus 544 v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~ 579 (1174)
+++||. ..++.|...|+||+||++|.+.
T Consensus 414 ld~vIl--------~~p~~s~~~~~QriGR~~R~~~ 441 (501)
T PHA02558 414 LHHVIF--------AHPSKSKIIVLQSIGRVLRKHG 441 (501)
T ss_pred ccEEEE--------ecCCcchhhhhhhhhccccCCC
Confidence 999998 7778889999999999999874
No 68
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=6e-32 Score=316.37 Aligned_cols=299 Identities=19% Similarity=0.250 Sum_probs=199.6
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-------------
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVA--NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI------------- 240 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~--~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~------------- 240 (1174)
+++|+||||||||++|+++++..+. .+.+++|++|+++|+.|+++++...|+. .+++++|....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHH
Confidence 5899999999999999999998774 3569999999999999999999999885 46666654321
Q ss_pred --------C----CCCcEEEEcHHHHHHHHhcccccccCCCCCC--ceeEEEEccccccccCCcHHHHHHHHHHC-CCCc
Q 001047 241 --------N----REAQILIMTTEILRNMLYQSVGMVSSESGLF--DVDVIVLDEVHYLSDISRGTVWEEIIIYC-PKEV 305 (1174)
Q Consensus 241 --------~----~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~--~v~lVIiDEaH~l~d~~~g~~~e~ii~~l-~~~~ 305 (1174)
+ ..++|+|+||+.+...+...... ....+. ..++|||||||.+.+..++. +..++..+ ..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~--~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~ 156 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGH--YEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDV 156 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccch--HHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCC
Confidence 0 13679999999998877642110 000111 23799999999999765555 44444444 3578
Q ss_pred cEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccC
Q 001047 306 QIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385 (1174)
Q Consensus 306 qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 385 (1174)
|+++||||++ +.+.+|+....... ... ..+.... . .... ..+.. ..
T Consensus 157 ~~i~~SATlp--~~l~~~~~~~~~~~----~~~-~~~~~~~--------~-------~~~~---~~~~~---------~~ 202 (358)
T TIGR01587 157 PILLMSATLP--KFLKEYAEKIGYVE----FNE-PLDLKEE--------R-------RFER---HRFIK---------IE 202 (358)
T ss_pred CEEEEecCch--HHHHHHHhcCCCcc----ccc-CCCCccc--------c-------cccc---cccee---------ec
Confidence 9999999997 45666654321100 000 0000000 0 0000 00000 00
Q ss_pred CCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcC
Q 001047 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN 465 (1174)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~ 465 (1174)
. . .. .....+..++..+ ....++||||++++.|+.++..|...+
T Consensus 203 ~------------------------~--~~--------~~~~~l~~l~~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~ 246 (358)
T TIGR01587 203 S------------------------D--KV--------GEISSLERLLEFI--KKGGKIAIIVNTVDRAQEFYQQLKENA 246 (358)
T ss_pred c------------------------c--cc--------cCHHHHHHHHHHh--hCCCeEEEEECCHHHHHHHHHHHHhhc
Confidence 0 0 00 0001111122211 235799999999999999999987543
Q ss_pred CCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHH----HHHHhcCCceEEEechhhhhcCCc
Q 001047 466 LLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI----EELFQRGLVKVVFATETLAAGINM 541 (1174)
Q Consensus 466 ~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v----~~~F~~G~ikVLVAT~tla~GIDi 541 (1174)
. ...+..+||+|++.+|..+ ++.|++|..+|||||+++++|||+
T Consensus 247 ~--------------------------------~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi 294 (358)
T TIGR01587 247 P--------------------------------EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDI 294 (358)
T ss_pred C--------------------------------CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceecc
Confidence 2 0158899999999999764 788999999999999999999999
Q ss_pred CCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCC--ccEEEEEeCC
Q 001047 542 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDN--RGHVVLVQTP 591 (1174)
Q Consensus 542 P~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~--~G~~ill~~~ 591 (1174)
| +++||+ +. .++.+|+||+||+||.|... .|.++++...
T Consensus 295 ~-~~~vi~--------~~--~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 295 S-ADVMIT--------EL--APIDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred C-CCEEEE--------cC--CCHHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 7 566666 33 35789999999999998542 3577777654
No 69
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.8e-31 Score=338.03 Aligned_cols=320 Identities=19% Similarity=0.241 Sum_probs=227.5
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcC--CeEEEEcccH----HHHHHHHHHHHHHhCCCeE
Q 001047 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ--RRIFYTTPLK----ALSNQKFREFRETFGDNNV 231 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g--~rvlvl~Ptr----aLa~Q~~~~l~~~~g~~~v 231 (1174)
++...+..+.+..+..++.++|+|+||||||+.....++. ...+ ++++++.|+| +||.|++.++...+|.. |
T Consensus 73 LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle-~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~-V 150 (1294)
T PRK11131 73 LPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLE-LGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGC-V 150 (1294)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHH-cCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcce-e
Confidence 4456677788888888889999999999999954332332 2223 3677788965 88888888887766654 4
Q ss_pred EE-EeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc-cccCCcHH-HHHHHHHHCCCCccEE
Q 001047 232 GL-LTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY-LSDISRGT-VWEEIIIYCPKEVQII 308 (1174)
Q Consensus 232 ~l-ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~-l~d~~~g~-~~e~ii~~l~~~~qiI 308 (1174)
|+ +..+...+.+++|+|||||+|.+++.. ...+.++++|||||||. +.+.++.. .+..++.. .++.|+|
T Consensus 151 GY~vrf~~~~s~~t~I~v~TpG~LL~~l~~-------d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlKvI 222 (1294)
T PRK11131 151 GYKVRFNDQVSDNTMVKLMTDGILLAEIQQ-------DRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLKVI 222 (1294)
T ss_pred ceeecCccccCCCCCEEEEChHHHHHHHhc-------CCccccCcEEEecCccccccccchHHHHHHHhhhc-CCCceEE
Confidence 44 344555667899999999999998874 44689999999999994 66666543 23333222 2478999
Q ss_pred EEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCc
Q 001047 309 CLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388 (1174)
Q Consensus 309 ~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 388 (1174)
+||||+ +.+.|+.++.. ..++....+..|+..++.... .. .. ..
T Consensus 223 LmSATi-d~e~fs~~F~~----apvI~V~Gr~~pVei~y~p~~------~~-~~----~~-------------------- 266 (1294)
T PRK11131 223 ITSATI-DPERFSRHFNN----APIIEVSGRTYPVEVRYRPIV------EE-AD----DT-------------------- 266 (1294)
T ss_pred EeeCCC-CHHHHHHHcCC----CCEEEEcCccccceEEEeecc------cc-cc----hh--------------------
Confidence 999999 57788888753 334544556666655443210 00 00 00
Q ss_pred cccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCC
Q 001047 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLD 468 (1174)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~ 468 (1174)
.......++..+..+...+.+.+|||++++.+++.+++.|...++..
T Consensus 267 ---------------------------------~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~ 313 (1294)
T PRK11131 267 ---------------------------------ERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRH 313 (1294)
T ss_pred ---------------------------------hHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCc
Confidence 00011223334444444566889999999999999999997654311
Q ss_pred HHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEE
Q 001047 469 ECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548 (1174)
Q Consensus 469 ~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI 548 (1174)
..|.++||+|++.+|..++.. .|..+|||||+++++|||||++++||
T Consensus 314 -------------------------------~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVI 360 (1294)
T PRK11131 314 -------------------------------TEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVI 360 (1294)
T ss_pred -------------------------------ceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEE
Confidence 137789999999999999886 58899999999999999999999999
Q ss_pred eccc----ccCCC---C---ccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 549 SSLS----KRTAS---G---RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 549 ~~~~----k~~~~---~---~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
+++. .|+.. . ..|.|..+|.||+|||||.+ .|.||.++++.
T Consensus 361 D~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~ 411 (1294)
T PRK11131 361 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSED 411 (1294)
T ss_pred ECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHH
Confidence 9752 23221 1 23578899999999999994 89999998763
No 70
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2e-31 Score=334.22 Aligned_cols=339 Identities=26% Similarity=0.287 Sum_probs=247.8
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCC--eEEEEcccHHHHHHHHHHHHHHh-
Q 001047 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR--RIFYTTPLKALSNQKFREFRETF- 226 (1174)
Q Consensus 150 ~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~--rvlvl~PtraLa~Q~~~~l~~~~- 226 (1174)
..+...+...|+++|.+|+..+.+|+|+||+.|||||||.+|++||++.+.++. ++||+.||+||++.+.++|.++.
T Consensus 61 ~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~ 140 (851)
T COG1205 61 SALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELIS 140 (851)
T ss_pred HHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHH
Confidence 344445555799999999999999999999999999999999999999987655 66999999999999999998854
Q ss_pred --C-CCeEEEEeCCCCCC-------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHH
Q 001047 227 --G-DNNVGLLTGDSAIN-------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEE 296 (1174)
Q Consensus 227 --g-~~~v~lltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ 296 (1174)
| ...++.++||+... ..++|+++||.+|..++.+.+..| ...+.++++||+||+|.... .+|..+..
T Consensus 141 ~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~--~~~~~~Lk~lVvDElHtYrG-v~GS~vA~ 217 (851)
T COG1205 141 DLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAW--LWLLRNLKYLVVDELHTYRG-VQGSEVAL 217 (851)
T ss_pred hCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchH--HHHHhcCcEEEEecceeccc-cchhHHHH
Confidence 3 45788999998643 579999999999999777765443 22466799999999998764 56665555
Q ss_pred HHHHC-------CCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhh
Q 001047 297 IIIYC-------PKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLS 369 (1174)
Q Consensus 297 ii~~l-------~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~ 369 (1174)
+++++ +.+.|+|+.|||+.|+.+++.-+........ +..+..|-....++.........- .
T Consensus 218 llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~-v~~~g~~~~~~~~~~~~p~~~~~~----------~- 285 (851)
T COG1205 218 LLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVP-VDEDGSPRGLRYFVRREPPIRELA----------E- 285 (851)
T ss_pred HHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceee-ccCCCCCCCceEEEEeCCcchhhh----------h-
Confidence 54432 5589999999999999888766654322111 444444444443332211000000 0
Q ss_pred hhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEec
Q 001047 370 LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449 (1174)
Q Consensus 370 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~ 449 (1174)
.++.. .......+....-.++.++|+|+.
T Consensus 286 --------------------------------------------------~~r~s-~~~~~~~~~~~~~~~~~~tL~F~~ 314 (851)
T COG1205 286 --------------------------------------------------SIRRS-ALAELATLAALLVRNGIQTLVFFR 314 (851)
T ss_pred --------------------------------------------------hcccc-hHHHHHHHHHHHHHcCceEEEEEe
Confidence 00000 111122222222345679999999
Q ss_pred CHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEE
Q 001047 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVV 529 (1174)
Q Consensus 450 sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVL 529 (1174)
+++.++.+.......-. . .. ..+...+..|||||.+.+|..++..|++|.+.++
T Consensus 315 sr~~~e~~~~~~~~~~~--------------~----------~~--~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~ 368 (851)
T COG1205 315 SRKQVELLYLSPRRRLV--------------R----------EG--GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGV 368 (851)
T ss_pred hhhhhhhhhhchhHHHh--------------h----------cc--hhhhhheeeccccCCHHHHHHHHHHHhcCCccEE
Confidence 99999888643321000 0 00 1233468999999999999999999999999999
Q ss_pred EechhhhhcCCcCCceEEEecccccCCCCcccc-CHHHHHHhhcccCCCCCCCccEEEEEeC
Q 001047 530 FATETLAAGINMPARTAVLSSLSKRTASGRIQL-TSNELFQMAGRAGRRGIDNRGHVVLVQT 590 (1174)
Q Consensus 530 VAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~-s~~~y~Qr~GRAGR~G~d~~G~~ill~~ 590 (1174)
++|++++.|||+-++..||. +..|. +..+++||+|||||++ ..+.++++..
T Consensus 369 ~st~AlelgidiG~ldavi~--------~g~P~~s~~~~~Q~~GRaGR~~--~~~l~~~v~~ 420 (851)
T COG1205 369 IATNALELGIDIGSLDAVIA--------YGYPGVSVLSFRQRAGRAGRRG--QESLVLVVLR 420 (851)
T ss_pred ecchhhhhceeehhhhhHhh--------cCCCCchHHHHHHhhhhccCCC--CCceEEEEeC
Confidence 99999999999999999999 66777 9999999999999998 5666666665
No 71
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=4.8e-30 Score=326.54 Aligned_cols=321 Identities=18% Similarity=0.194 Sum_probs=231.7
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHHhCCC---eEEE-
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSNQKFREFRETFGDN---NVGL- 233 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~---~v~l- 233 (1174)
+...+..+.+..+.+++.+||+|+||||||+.....++..- ...++++++.|+|.-+..++.++.+.+|.. .||.
T Consensus 67 Pi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~ 146 (1283)
T TIGR01967 67 PVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYK 146 (1283)
T ss_pred CHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeE
Confidence 34455567888888888999999999999997655444432 123478889999988888888888777632 3443
Q ss_pred EeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc-cccCCcHHH-HHHHHHHCCCCccEEEEc
Q 001047 234 LTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY-LSDISRGTV-WEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 234 ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~-l~d~~~g~~-~e~ii~~l~~~~qiI~LS 311 (1174)
+..+...+.++.|.|||+|+|.+++.. ...+.++++|||||||. +.+.++... +..++... ++.|+|+||
T Consensus 147 vR~~~~~s~~T~I~~~TdGiLLr~l~~-------d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmS 218 (1283)
T TIGR01967 147 VRFHDQVSSNTLVKLMTDGILLAETQQ-------DRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITS 218 (1283)
T ss_pred EcCCcccCCCceeeeccccHHHHHhhh-------CcccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEe
Confidence 455666778899999999999998864 45689999999999994 666666543 45554443 578999999
Q ss_pred cccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCcccc
Q 001047 312 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 391 (1174)
Q Consensus 312 ATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 391 (1174)
||+ +.+.|+.++.. +.++....+..|+..++..... ... ...
T Consensus 219 ATl-d~~~fa~~F~~----apvI~V~Gr~~PVev~Y~~~~~------~~~---~~~------------------------ 260 (1283)
T TIGR01967 219 ATI-DPERFSRHFNN----APIIEVSGRTYPVEVRYRPLVE------EQE---DDD------------------------ 260 (1283)
T ss_pred CCc-CHHHHHHHhcC----CCEEEECCCcccceeEEecccc------ccc---chh------------------------
Confidence 999 57889998863 4456566676676655421100 000 000
Q ss_pred ccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHh
Q 001047 392 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECE 471 (1174)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e 471 (1174)
......+...+..+.....+.+|||++++++++.+++.|...++..
T Consensus 261 -------------------------------~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~--- 306 (1283)
T TIGR01967 261 -------------------------------LDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRH--- 306 (1283)
T ss_pred -------------------------------hhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCC---
Confidence 0001223344444444456899999999999999999987543200
Q ss_pred HHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecc
Q 001047 472 MSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551 (1174)
Q Consensus 472 ~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~ 551 (1174)
..|.++||+|++.+|..++..+ +..+|||||+++++|||||++++||+++
T Consensus 307 ----------------------------~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsG 356 (1283)
T TIGR01967 307 ----------------------------TEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTG 356 (1283)
T ss_pred ----------------------------cEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCC
Confidence 1478899999999999996654 3479999999999999999999999976
Q ss_pred cc----cCCC------CccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 552 SK----RTAS------GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 552 ~k----~~~~------~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
.. |+.. ...++|.++|.||+|||||.| .|.||.+++..
T Consensus 357 l~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~ 404 (1283)
T TIGR01967 357 TARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEE 404 (1283)
T ss_pred CccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHH
Confidence 32 3221 124678999999999999997 99999988753
No 72
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=2.6e-30 Score=306.78 Aligned_cols=388 Identities=19% Similarity=0.287 Sum_probs=231.4
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEe
Q 001047 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA--NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLT 235 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~--~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~llt 235 (1174)
+.++.||.+.+...+ |+|+||++|||+|||++|...++.++. .+.++||++|++.|++|+...+..++-...+....
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~~l 139 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTGQL 139 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccceeec
Confidence 579999999999988 999999999999999999999999886 46799999999999999997777754333343344
Q ss_pred CC-CCCC------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCC-cHHHHHHHHHHCCCCccE
Q 001047 236 GD-SAIN------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDIS-RGTVWEEIIIYCPKEVQI 307 (1174)
Q Consensus 236 Gd-~~~~------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~-~g~~~e~ii~~l~~~~qi 307 (1174)
|| .... ...+|+|+||++|.+.|..... ..|..+.++||||||+-.... +..++...+..-....|+
T Consensus 140 ~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~-----~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qI 214 (746)
T KOG0354|consen 140 GDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLH-----DELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQI 214 (746)
T ss_pred cCccCCCchhhhhcccceEEeChHhhhhhcccccc-----cccceEEEEEEcccccccccccHHHHHHHHHHhhhccccE
Confidence 44 3322 3689999999999999987432 227889999999999987543 334444555444445599
Q ss_pred EEEccccCC-hHHHHHHHhcccCceeee--c---------CCCCccccEEeecccccccccccccccccch---hhhh-h
Q 001047 308 ICLSATVAN-ADELAGWIGQIHGKTELI--T---------SSRRPVPLTWYFSTKTALLPLLDEKGKHMNR---KLSL-N 371 (1174)
Q Consensus 308 I~LSATl~n-~~~~~~~l~~~~~~~~~i--~---------~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~---~l~~-~ 371 (1174)
|+||||+++ .+.+.+.+..+.-...+- . ....+.|............+ -+..+.+ .+.. .
T Consensus 215 LgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~----f~~~i~p~l~~l~~~~ 290 (746)
T KOG0354|consen 215 LGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDP----FGMIIEPLLQQLQEEG 290 (746)
T ss_pred EEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhh----HHHHHHHHHHHHHhcC
Confidence 999999985 466666665543211110 0 01112222100000000000 0000000 0000 0
Q ss_pred hhhcccccCCCcc-----------CCCccccc-------ccc--------ccCC--CCCccccccccc-ccc--------
Q 001047 372 YLQLSTSEVKPYK-----------DGGSRRRN-------SRK--------HADM--NSNNIVTSFGQH-QLS-------- 414 (1174)
Q Consensus 372 ~l~~~~~~~~~~~-----------~~~~~~~~-------~~~--------~~~~--~~~~~~~~~~~~-~l~-------- 414 (1174)
+....... ..|. ..+....+ ... .+-+ ..+.....+... .+.
T Consensus 291 l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e 369 (746)
T KOG0354|consen 291 LIEISDKS-TSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELE 369 (746)
T ss_pred cccccccc-ccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhc
Confidence 00000000 0000 00000000 000 0000 000000000000 000
Q ss_pred ----------hhhhhhhhh------cCchhHHHHHHHHH-hCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHH
Q 001047 415 ----------KNSINAIRR------SQVPQVIDTLWHLR-SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL 477 (1174)
Q Consensus 415 ----------~~~~~~~~~------~~~~~~~~~l~~l~-~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~ 477 (1174)
..++..+.. .....+.+.+.... .....++|||+.+|..+..+...|...-
T Consensus 370 ~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~------------ 437 (746)
T KOG0354|consen 370 ARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLH------------ 437 (746)
T ss_pred chhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhh------------
Confidence 000011110 11222333333322 2355789999999999999988886310
Q ss_pred HHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCC
Q 001047 478 ALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 557 (1174)
Q Consensus 478 ~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~ 557 (1174)
...++..+. .+.|-+.--.||++.++..+++.|+.|.++|||||+++++|+|||.+++||.
T Consensus 438 ---------~~~ir~~~f--iGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc-------- 498 (746)
T KOG0354|consen 438 ---------ELGIKAEIF--IGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVIC-------- 498 (746)
T ss_pred ---------hccccccee--eeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEE--------
Confidence 000111111 1122222236999999999999999999999999999999999999999999
Q ss_pred CccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 558 ~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
|+...++...+||.|| ||+ ..|.|+++.+.
T Consensus 499 Yd~~snpIrmIQrrGR-gRa---~ns~~vll~t~ 528 (746)
T KOG0354|consen 499 YDYSSNPIRMVQRRGR-GRA---RNSKCVLLTTG 528 (746)
T ss_pred ecCCccHHHHHHHhcc-ccc---cCCeEEEEEcc
Confidence 8888899999999999 998 68999998884
No 73
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=2.2e-30 Score=281.25 Aligned_cols=327 Identities=20% Similarity=0.247 Sum_probs=224.8
Q ss_pred hHHHhhcCCCC--CCHHHHHHHHHHHcC-CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHH
Q 001047 149 VDELASIYDFR--IDKFQRSSIEAFLRG-SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRET 225 (1174)
Q Consensus 149 ~~~l~~~~~~~--~~~~Q~~ai~~ll~g-~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~ 225 (1174)
.+.+++.|++. -++.|++|+.++..+ +||.|++|||+||+++|.+|.+.+ ++.+||++|..+|+..+...+..+
T Consensus 8 reaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~gITIV~SPLiALIkDQiDHL~~L 84 (641)
T KOG0352|consen 8 REALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---GGITIVISPLIALIKDQIDHLKRL 84 (641)
T ss_pred HHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---CCeEEEehHHHHHHHHHHHHHHhc
Confidence 45677777765 478999999998766 699999999999999999998765 669999999999999999998873
Q ss_pred hCCCeEEEEeCCC-------------CCCCCCcEEEEcHHHHH-----HHHhcccccccCCCCCCceeEEEEcccccccc
Q 001047 226 FGDNNVGLLTGDS-------------AINREAQILIMTTEILR-----NMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287 (1174)
Q Consensus 226 ~g~~~v~lltGd~-------------~~~~~~~IlV~Tpe~L~-----~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d 287 (1174)
. +.+.-+.... ...+...+++.|||... .+|.. ...-+.+.++|+||||+++.
T Consensus 85 -K-Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~-------L~~r~~L~Y~vVDEAHCVSQ 155 (641)
T KOG0352|consen 85 -K-VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG-------LANRDVLRYIVVDEAHCVSQ 155 (641)
T ss_pred -C-CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH-------HhhhceeeeEEechhhhHhh
Confidence 1 1122222211 12356789999999543 22221 11234689999999999997
Q ss_pred C--CcHHHHHHH---HHHCCCCccEEEEccccCC--hHHHHHHHhcccCceeeecCC-CCccccEEeecccccccccccc
Q 001047 288 I--SRGTVWEEI---IIYCPKEVQIICLSATVAN--ADELAGWIGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDE 359 (1174)
Q Consensus 288 ~--~~g~~~e~i---i~~l~~~~qiI~LSATl~n--~~~~~~~l~~~~~~~~~i~~~-~rpvpl~~~~~~~~~~~~~~~~ 359 (1174)
| +|++.+..+ -..+ +++..++||||.+. .+++..-|.. +.++.++.+. +|. .|. |.+. .
T Consensus 156 WGHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L-~~PVAiFkTP~FR~-NLF---------YD~~-~ 222 (641)
T KOG0352|consen 156 WGHDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKL-RNPVAIFKTPTFRD-NLF---------YDNH-M 222 (641)
T ss_pred hccccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhh-cCcHHhccCcchhh-hhh---------HHHH-H
Confidence 7 566766554 2333 47889999999743 2445444432 3333333322 111 110 0000 0
Q ss_pred cccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhC
Q 001047 360 KGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 439 (1174)
Q Consensus 360 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 439 (1174)
...+...+ ..+ ..|....+... +...+-.+.
T Consensus 223 -K~~I~D~~--~~L--------------------------------aDF~~~~LG~~--------------~~~~~~~K~ 253 (641)
T KOG0352|consen 223 -KSFITDCL--TVL--------------------------------ADFSSSNLGKH--------------EKASQNKKT 253 (641)
T ss_pred -HHHhhhHh--HhH--------------------------------HHHHHHhcCCh--------------hhhhcCCCC
Confidence 00000000 000 00000000000 000000011
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
-.+..||||.||..|+.+|-.|...|+ +.-.+|+||-..+|..|.+
T Consensus 254 ~~GCGIVYCRTR~~cEq~AI~l~~~Gi----------------------------------~A~AYHAGLK~~ERTeVQe 299 (641)
T KOG0352|consen 254 FTGCGIVYCRTRNECEQVAIMLEIAGI----------------------------------PAMAYHAGLKKKERTEVQE 299 (641)
T ss_pred cCcceEEEeccHHHHHHHHHHhhhcCc----------------------------------chHHHhcccccchhHHHHH
Confidence 235789999999999999998887776 5667999999999999999
Q ss_pred HHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
.|.+|++.||+||..++||||-|+|++||| ++++.+.+-|.|-.|||||.| ...+|-++++..+
T Consensus 300 ~WM~~~~PvI~AT~SFGMGVDKp~VRFViH--------W~~~qn~AgYYQESGRAGRDG--k~SyCRLYYsR~D 363 (641)
T KOG0352|consen 300 KWMNNEIPVIAATVSFGMGVDKPDVRFVIH--------WSPSQNLAGYYQESGRAGRDG--KRSYCRLYYSRQD 363 (641)
T ss_pred HHhcCCCCEEEEEeccccccCCcceeEEEe--------cCchhhhHHHHHhccccccCC--Cccceeeeecccc
Confidence 999999999999999999999999999999 899999999999999999999 7889999888754
No 74
>PRK09401 reverse gyrase; Reviewed
Probab=99.97 E-value=7.9e-30 Score=328.92 Aligned_cols=295 Identities=17% Similarity=0.158 Sum_probs=205.6
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCC-
Q 001047 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGD- 228 (1174)
Q Consensus 150 ~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~- 228 (1174)
+.|+..+++.|+++|..+++.++.|+|++++||||+|||..++.++.....++.+++|++||++|+.|+++.++.+...
T Consensus 71 ~~f~~~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 71 KFFKKKTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 3467778889999999999999999999999999999997554444433446789999999999999999999986543
Q ss_pred -CeEEEEeCCCCC-------------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccccc-------
Q 001047 229 -NNVGLLTGDSAI-------------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD------- 287 (1174)
Q Consensus 229 -~~v~lltGd~~~-------------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d------- 287 (1174)
..+..+.|+... ..+++|+|+||++|.+++.. ....++++||+||||+|++
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~--------l~~~~~~~lVvDEaD~~L~~~k~id~ 222 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE--------LPKKKFDFVFVDDVDAVLKSSKNIDK 222 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh--------ccccccCEEEEEChHHhhhcccchhh
Confidence 345555554431 24689999999999987642 2345699999999999986
Q ss_pred ----CCcH-HHHHHHHHHCCC------------------------CccEEEEccccCChHHHHH-HHhcccCceeeecCC
Q 001047 288 ----ISRG-TVWEEIIIYCPK------------------------EVQIICLSATVANADELAG-WIGQIHGKTELITSS 337 (1174)
Q Consensus 288 ----~~~g-~~~e~ii~~l~~------------------------~~qiI~LSATl~n~~~~~~-~l~~~~~~~~~i~~~ 337 (1174)
.+|. ..++.++..++. ..|++++|||++. +.+.. .+....+ ..+-...
T Consensus 223 ~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~-~~~~~~l~~~ll~-~~v~~~~ 300 (1176)
T PRK09401 223 LLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRP-RGNRVKLFRELLG-FEVGSPV 300 (1176)
T ss_pred HHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCc-cchHHHHhhccce-EEecCcc
Confidence 3453 456666655543 6899999999863 11111 1111000 0000000
Q ss_pred CCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhh
Q 001047 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNS 417 (1174)
Q Consensus 338 ~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 417 (1174)
...-.+.+. |+.
T Consensus 301 ~~~rnI~~~-------------------------yi~------------------------------------------- 312 (1176)
T PRK09401 301 FYLRNIVDS-------------------------YIV------------------------------------------- 312 (1176)
T ss_pred cccCCceEE-------------------------EEE-------------------------------------------
Confidence 000000000 000
Q ss_pred hhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHH---HHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhH
Q 001047 418 INAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG---CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA 494 (1174)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~---~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l 494 (1174)
.+.....+..+...-+.++||||+++.+ |+.++..|...|+
T Consensus 313 --------~~~k~~~L~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi---------------------------- 356 (1176)
T PRK09401 313 --------DEDSVEKLVELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLGI---------------------------- 356 (1176)
T ss_pred --------cccHHHHHHHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCCC----------------------------
Confidence 0001112222222323589999999877 9999999988776
Q ss_pred HhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEe----chhhhhcCCcCC-ceEEEecccccCCCCcccc------C
Q 001047 495 IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA----TETLAAGINMPA-RTAVLSSLSKRTASGRIQL------T 563 (1174)
Q Consensus 495 ~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVA----T~tla~GIDiP~-v~vVI~~~~k~~~~~~~p~------s 563 (1174)
.+..+||+| +. .++.|++|+++|||| |++++||||+|+ +++||+ ++.|. .
T Consensus 357 ------~v~~~hg~l----~~-~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~--------y~vP~~~~~~~~ 417 (1176)
T PRK09401 357 ------NAELAISGF----ER-KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIF--------YGVPKFKFSLEE 417 (1176)
T ss_pred ------cEEEEeCcH----HH-HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEE--------eCCCCEEEeccc
Confidence 688999999 22 349999999999999 689999999999 899999 66665 5
Q ss_pred HHHHHHhhcccCCC
Q 001047 564 SNELFQMAGRAGRR 577 (1174)
Q Consensus 564 ~~~y~Qr~GRAGR~ 577 (1174)
...|.||.||+-..
T Consensus 418 ~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 418 ELAPPFLLLRLLSL 431 (1176)
T ss_pred cccCHHHHHHHHhh
Confidence 57799999999743
No 75
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=3.8e-29 Score=290.05 Aligned_cols=308 Identities=14% Similarity=0.159 Sum_probs=191.0
Q ss_pred HHHHHHHHHHcCCc--EEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC------CCeEEEE
Q 001047 163 FQRSSIEAFLRGSS--VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG------DNNVGLL 234 (1174)
Q Consensus 163 ~Q~~ai~~ll~g~~--vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g------~~~v~ll 234 (1174)
+|.++++.+.++++ ++++||||||||++|++|++. .+.+++|++|+++|++|+++++.+.+. +..+..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~ 77 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHV 77 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEe
Confidence 59999999998864 789999999999999999885 356899999999999999999999772 3456677
Q ss_pred eCCCCC---------------------------CCCCcEEEEcHHHHHHHHhccccc--ccCCCCCCceeEEEEcccccc
Q 001047 235 TGDSAI---------------------------NREAQILIMTTEILRNMLYQSVGM--VSSESGLFDVDVIVLDEVHYL 285 (1174)
Q Consensus 235 tGd~~~---------------------------~~~~~IlV~Tpe~L~~~L~~~~~~--~~~~~~l~~v~lVIiDEaH~l 285 (1174)
+|+... ...+.|+++||++|..++...... ......+.++++|||||+|.+
T Consensus 78 ~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~ 157 (357)
T TIGR03158 78 SKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLY 157 (357)
T ss_pred cCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccccc
Confidence 776211 124678899999998765431100 001123578999999999998
Q ss_pred ccCCcHH-----HHHHHHHHCCCCccEEEEccccCChHHHHHHHhcc--cCceeeecCCCCccccEEeeccccccccccc
Q 001047 286 SDISRGT-----VWEEIIIYCPKEVQIICLSATVANADELAGWIGQI--HGKTELITSSRRPVPLTWYFSTKTALLPLLD 358 (1174)
Q Consensus 286 ~d~~~g~-----~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~--~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~ 358 (1174)
....... ....++.......++++||||++ ..+..++... .+ ..++....+. +.+. .. ..+..
T Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~--~~~~~~l~~~~~~~-~~~~~v~g~~----~~~~-~~--~~~~~ 227 (357)
T TIGR03158 158 DAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPD--PALILRLQNAKQAG-VKIAPIDGEK----YQFP-DN--PELEA 227 (357)
T ss_pred CcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCC--HHHHHHHHhccccC-ceeeeecCcc----cccC-CC--hhhhc
Confidence 7543221 22233333344579999999986 3445555432 11 1111111110 0000 00 00000
Q ss_pred cc-ccccc---hhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHH
Q 001047 359 EK-GKHMN---RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW 434 (1174)
Q Consensus 359 ~~-~~~~~---~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 434 (1174)
.. +.... +.+.+.+. . ...... .......+.+.
T Consensus 228 ~~~~~~~~~~~~~i~~~~~---------------------------------~--~~~~~~--------~~l~~l~~~i~ 264 (357)
T TIGR03158 228 DNKTQSFRPVLPPVELELI---------------------------------P--APDFKE--------EELSELAEEVI 264 (357)
T ss_pred cccccccceeccceEEEEE---------------------------------e--CCchhH--------HHHHHHHHHHH
Confidence 00 00000 00000000 0 000000 00111122222
Q ss_pred H-HHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHH
Q 001047 435 H-LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIW 513 (1174)
Q Consensus 435 ~-l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~ 513 (1174)
. +...+..++||||+|++.|+.++..|...+. ...+..+||.+++..
T Consensus 265 ~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~--------------------------------~~~~~~l~g~~~~~~ 312 (357)
T TIGR03158 265 ERFRQLPGERGAIILDSLDEVNRLSDLLQQQGL--------------------------------GDDIGRITGFAPKKD 312 (357)
T ss_pred HHHhccCCCeEEEEECCHHHHHHHHHHHhhhCC--------------------------------CceEEeeecCCCHHH
Confidence 2 2223557899999999999999999975432 014678999999998
Q ss_pred HHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccC
Q 001047 514 KSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAG 575 (1174)
Q Consensus 514 R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAG 575 (1174)
|..+ +..+|||||+++++|||+|.+.+ |. . |.+..+|+||+||+|
T Consensus 313 R~~~------~~~~iLVaTdv~~rGiDi~~~~v-i~--------~--p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 313 RERA------MQFDILLGTSTVDVGVDFKRDWL-IF--------S--ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHh------ccCCEEEEecHHhcccCCCCceE-EE--------C--CCCHHHHhhhcccCC
Confidence 8654 47899999999999999999844 44 2 568899999999998
No 76
>PRK13766 Hef nuclease; Provisional
Probab=99.97 E-value=7.4e-29 Score=318.01 Aligned_cols=382 Identities=17% Similarity=0.222 Sum_probs=234.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHHhCC--CeEE
Q 001047 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKFREFRETFGD--NNVG 232 (1174)
Q Consensus 156 ~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~~~l~~~~g~--~~v~ 232 (1174)
..+++++||.+++..++.+ +++|++|||+|||+++.+++...+. .++++||++||++|++|+.+.+++.++. ..+.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~ 90 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIV 90 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEE
Confidence 3468999999999988886 9999999999999999998887764 4679999999999999999999997764 3688
Q ss_pred EEeCCCCCC------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCcc
Q 001047 233 LLTGDSAIN------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 306 (1174)
Q Consensus 233 lltGd~~~~------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~q 306 (1174)
.++|+.... .+++|+|+||+++.+.+.. +...+.++++|||||||++........+........+..+
T Consensus 91 ~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~------~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~ 164 (773)
T PRK13766 91 VFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA------GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPL 164 (773)
T ss_pred EEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHc------CCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCE
Confidence 899987542 3679999999999887754 3445778999999999998754433333344444455678
Q ss_pred EEEEccccCC-hHHHHHHHhcccCceeeecCCCCc--------cccEEeecccccccccccccccccchhhh--hhhhhc
Q 001047 307 IICLSATVAN-ADELAGWIGQIHGKTELITSSRRP--------VPLTWYFSTKTALLPLLDEKGKHMNRKLS--LNYLQL 375 (1174)
Q Consensus 307 iI~LSATl~n-~~~~~~~l~~~~~~~~~i~~~~rp--------vpl~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~l~~ 375 (1174)
+++||||+.. ...+...+.........+.+...+ ..+.+.... +.+.+......+...+. +..+..
T Consensus 165 il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~---l~~~~~~i~~~l~~~~~~~l~~l~~ 241 (773)
T PRK13766 165 VLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVE---LPEELKEIRDLLNEALKDRLKKLKE 241 (773)
T ss_pred EEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeC---CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999853 445555554433222122222111 011111000 00000000000000000 000000
Q ss_pred cccc--CCCccCCCc---cccccccccCCCCCc---------------------------ccccc----cc---------
Q 001047 376 STSE--VKPYKDGGS---RRRNSRKHADMNSNN---------------------------IVTSF----GQ--------- 410 (1174)
Q Consensus 376 ~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~---------------------------~~~~~----~~--------- 410 (1174)
.... ...+..... ............... .+..+ ..
T Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~ 321 (773)
T PRK13766 242 LGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSK 321 (773)
T ss_pred CCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcH
Confidence 0000 000000000 000000000000000 00000 00
Q ss_pred ---cccchhhh----hhhh-----hcCchhHHHHHHHHHh-CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHH
Q 001047 411 ---HQLSKNSI----NAIR-----RSQVPQVIDTLWHLRS-RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL 477 (1174)
Q Consensus 411 ---~~l~~~~~----~~~~-----~~~~~~~~~~l~~l~~-~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~ 477 (1174)
........ ..+. ...+..+.+++..... .+..++||||.+++.|+.+++.|...++
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~----------- 390 (773)
T PRK13766 322 ASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGI----------- 390 (773)
T ss_pred HHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCC-----------
Confidence 00000000 0000 0112222333333322 4668999999999999999999976554
Q ss_pred HHHHHHhhCCccchhhHHhhhccceeEe--------cCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEe
Q 001047 478 ALKRFRILYPDAVREPAIKGLLKGVAAH--------HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549 (1174)
Q Consensus 478 ~~~~~~~~~~~~~~~~l~~~L~~gv~~~--------Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~ 549 (1174)
.+..+ |+||++.+|..++..|++|.++|||||+++++|+|+|++++||+
T Consensus 391 -----------------------~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~ 447 (773)
T PRK13766 391 -----------------------KAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF 447 (773)
T ss_pred -----------------------ceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE
Confidence 12233 45699999999999999999999999999999999999999999
Q ss_pred cccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 550 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 550 ~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
|+.+.++..|+||+||+||.| .|.++++....
T Consensus 448 --------yd~~~s~~r~iQR~GR~gR~~---~~~v~~l~~~~ 479 (773)
T PRK13766 448 --------YEPVPSEIRSIQRKGRTGRQE---EGRVVVLIAKG 479 (773)
T ss_pred --------eCCCCCHHHHHHHhcccCcCC---CCEEEEEEeCC
Confidence 889999999999999999987 58888777654
No 77
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.4e-29 Score=290.99 Aligned_cols=349 Identities=19% Similarity=0.223 Sum_probs=259.7
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHHh----CCCeEE
Q 001047 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSNQKFREFRETF----GDNNVG 232 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~----g~~~v~ 232 (1174)
++...+-.+.+..+.+++.+||.|+||||||+.....+.++- ...+++.++.|+|.-|..+++++.+.. |.....
T Consensus 50 LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY 129 (674)
T KOG0922|consen 50 LPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGY 129 (674)
T ss_pred CCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeee
Confidence 455667778899999999999999999999998877766553 344569999999977766666666654 444444
Q ss_pred EEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHH---HCCCCccEEE
Q 001047 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIII---YCPKEVQIIC 309 (1174)
Q Consensus 233 lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~---~l~~~~qiI~ 309 (1174)
.+..+....+.+.|.+||.|+|++.+.. +..|.++++||+||||... -...++--+++ .-+++.++|.
T Consensus 130 ~IRFed~ts~~TrikymTDG~LLRE~l~-------Dp~LskYsvIIlDEAHERs--l~TDiLlGlLKki~~~R~~LklIi 200 (674)
T KOG0922|consen 130 TIRFEDSTSKDTRIKYMTDGMLLREILK-------DPLLSKYSVIILDEAHERS--LHTDILLGLLKKILKKRPDLKLII 200 (674)
T ss_pred EEEecccCCCceeEEEecchHHHHHHhc-------CCccccccEEEEechhhhh--hHHHHHHHHHHHHHhcCCCceEEE
Confidence 5677778888999999999999988774 6789999999999999864 22222222222 2245789999
Q ss_pred EccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCcc
Q 001047 310 LSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389 (1174)
Q Consensus 310 LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 389 (1174)
||||+ |++.|++|++. +.++....|..|+..++..... .+|
T Consensus 201 mSATl-da~kfS~yF~~----a~i~~i~GR~fPVei~y~~~p~-----------------~dY----------------- 241 (674)
T KOG0922|consen 201 MSATL-DAEKFSEYFNN----APILTIPGRTFPVEILYLKEPT-----------------ADY----------------- 241 (674)
T ss_pred Eeeee-cHHHHHHHhcC----CceEeecCCCCceeEEeccCCc-----------------hhh-----------------
Confidence 99999 89999999986 8899999999999887754210 111
Q ss_pred ccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHh-CCCCCeEEEecCHHHHHHHHHHhhhcCCCC
Q 001047 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS-RDMLPAIWFIFNRRGCDAAVQYLEDCNLLD 468 (1174)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~IVF~~sr~~~~~la~~L~~~~~~~ 468 (1174)
+...+.++.+++. .+.+-++||..++++.+.+++.|.+..-
T Consensus 242 ------------------------------------v~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~-- 283 (674)
T KOG0922|consen 242 ------------------------------------VDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAK-- 283 (674)
T ss_pred ------------------------------------HHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhh--
Confidence 2233444555443 4667899999999999999988863211
Q ss_pred HHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEE
Q 001047 469 ECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548 (1174)
Q Consensus 469 ~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI 548 (1174)
. .++ ....-+.++||.|+++++..|+..-..|..||++||++++..|.||.+.+||
T Consensus 284 ------------~----~~~--------~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVV 339 (674)
T KOG0922|consen 284 ------------S----LPE--------DCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVV 339 (674)
T ss_pred ------------h----ccc--------cCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEE
Confidence 0 000 0001367899999999999999999999999999999999999999999999
Q ss_pred eccc----ccCCCC------ccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhhCCCcceeeeeccchh
Q 001047 549 SSLS----KRTASG------RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618 (1174)
Q Consensus 549 ~~~~----k~~~~~------~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~~~~~pl~S~f~~~y~ 618 (1174)
+++. +|+... -.|+|.++..||+|||||.| .|.|+-+++.. +| ..+.....|-.-... .-.
T Consensus 340 DsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~---pGkcyRLYte~----~~-~~~~~~~~PEI~R~~-Ls~ 410 (674)
T KOG0922|consen 340 DSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG---PGKCYRLYTES----AY-DKMPLQTVPEIQRVN-LSS 410 (674)
T ss_pred cCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC---CceEEEeeeHH----HH-hhcccCCCCceeeec-hHH
Confidence 9864 243321 36899999999999999996 99999988763 24 556556555433322 234
Q ss_pred HHHHHhh
Q 001047 619 MVLNLLA 625 (1174)
Q Consensus 619 ~vlnll~ 625 (1174)
.+|.|.+
T Consensus 411 ~vL~Lka 417 (674)
T KOG0922|consen 411 AVLQLKA 417 (674)
T ss_pred HHHHHHh
Confidence 5666554
No 78
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.7e-29 Score=309.98 Aligned_cols=324 Identities=18% Similarity=0.212 Sum_probs=257.7
Q ss_pred cCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHHhCC----C
Q 001047 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKFREFRETFGD----N 229 (1174)
Q Consensus 155 ~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~~~l~~~~g~----~ 229 (1174)
....+.+....+.+.++.++..++|+||||||||+.....+++... .++++.++.|+|--|..+++++.+.+|. .
T Consensus 46 ~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 46 RSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred cccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 3345667788889999999999999999999999999888887753 4569999999998888888888877764 3
Q ss_pred eEEEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc-cCCcHH-HHHHHHHHCCCCccE
Q 001047 230 NVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS-DISRGT-VWEEIIIYCPKEVQI 307 (1174)
Q Consensus 230 ~v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~-d~~~g~-~~e~ii~~l~~~~qi 307 (1174)
..+.+.++...++++.|-|||.|+|.+++.. +..|+.+++|||||||..+ +.++.. .+..++...+++.++
T Consensus 126 VGY~iRfe~~~s~~Trik~mTdGiLlrei~~-------D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 126 VGYSIRFESKVSPRTRIKVMTDGILLREIQN-------DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred eeEEEEeeccCCCCceeEEeccHHHHHHHhh-------CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 3445788999999999999999999999985 6679999999999999865 223332 344456666778999
Q ss_pred EEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCC
Q 001047 308 ICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387 (1174)
Q Consensus 308 I~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 387 (1174)
|.||||+ |++.|+.+|+. +.++..+.|.+|++.+|...... ++
T Consensus 199 IimSATl-d~~rfs~~f~~----apvi~i~GR~fPVei~Y~~~~~~-----------------d~--------------- 241 (845)
T COG1643 199 IIMSATL-DAERFSAYFGN----APVIEIEGRTYPVEIRYLPEAEA-----------------DY--------------- 241 (845)
T ss_pred EEEeccc-CHHHHHHHcCC----CCEEEecCCccceEEEecCCCCc-----------------ch---------------
Confidence 9999999 89999999975 88999999999999887432210 00
Q ss_pred ccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCC
Q 001047 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL 467 (1174)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~ 467 (1174)
.....+...+......+.+.++||.+..++.+.+++.|.+..+.
T Consensus 242 ------------------------------------~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~ 285 (845)
T COG1643 242 ------------------------------------ILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELG 285 (845)
T ss_pred ------------------------------------hHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhcccc
Confidence 00122334445555566789999999999999999988752210
Q ss_pred CHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEE
Q 001047 468 DECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547 (1174)
Q Consensus 468 ~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vV 547 (1174)
. .--|.++||.|++.++..|++--..|..||++||++++.+|.||++.+|
T Consensus 286 ~------------------------------~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 286 D------------------------------DLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred C------------------------------CcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 0 0148999999999999999998888988999999999999999999999
Q ss_pred Eecccc----cCCC------CccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 548 LSSLSK----RTAS------GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 548 I~~~~k----~~~~------~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
|+++.- |+.. ...|+|.++..||.|||||.+ .|.||-+++.
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLyse 386 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYSE 386 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecCH
Confidence 998642 3322 136899999999999999996 9999999876
No 79
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=7.7e-30 Score=316.75 Aligned_cols=328 Identities=23% Similarity=0.275 Sum_probs=246.3
Q ss_pred hHHHhhcCCC-CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC
Q 001047 149 VDELASIYDF-RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG 227 (1174)
Q Consensus 149 ~~~l~~~~~~-~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g 227 (1174)
...+...|+. .+++.|.+||..++.|++++|.+|||+||++||++|++-. ++.+|||+|..+|+..+...+...
T Consensus 253 ~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~---~gitvVISPL~SLm~DQv~~L~~~-- 327 (941)
T KOG0351|consen 253 ELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL---GGVTVVISPLISLMQDQVTHLSKK-- 327 (941)
T ss_pred HHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc---CCceEEeccHHHHHHHHHHhhhhc--
Confidence 3445566665 4999999999999999999999999999999999998754 669999999999999998888442
Q ss_pred CCeEEEEeCCCCC-------------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCc---eeEEEEccccccccC--C
Q 001047 228 DNNVGLLTGDSAI-------------NREAQILIMTTEILRNMLYQSVGMVSSESGLFD---VDVIVLDEVHYLSDI--S 289 (1174)
Q Consensus 228 ~~~v~lltGd~~~-------------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~---v~lVIiDEaH~l~d~--~ 289 (1174)
++....++++... +...+|++.|||.+..--.- ......+.. +.++||||||+++.| .
T Consensus 328 ~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l----~~~~~~L~~~~~lal~vIDEAHCVSqWgHd 403 (941)
T KOG0351|consen 328 GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGL----LESLADLYARGLLALFVIDEAHCVSQWGHD 403 (941)
T ss_pred CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccch----hhHHHhccCCCeeEEEEecHHHHhhhhccc
Confidence 3556667766543 12678999999976532110 001122334 899999999999987 6
Q ss_pred cHHHHHHHH--HHCCCCccEEEEccccCC--hHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccc
Q 001047 290 RGTVWEEII--IYCPKEVQIICLSATVAN--ADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 365 (1174)
Q Consensus 290 ~g~~~e~ii--~~l~~~~qiI~LSATl~n--~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~ 365 (1174)
|++.+..+- ....+.+.+|+||||.+. .+++.+-|+.. .+.++...+-+..+.+.+..+..
T Consensus 404 FRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~--~~~~~~~sfnR~NL~yeV~~k~~------------- 468 (941)
T KOG0351|consen 404 FRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLR--NPELFKSSFNRPNLKYEVSPKTD------------- 468 (941)
T ss_pred ccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCC--CcceecccCCCCCceEEEEeccC-------------
Confidence 788777653 222335889999999853 35666666542 23444444433333333221110
Q ss_pred hhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHh-CCCCCe
Q 001047 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS-RDMLPA 444 (1174)
Q Consensus 366 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~ 444 (1174)
.......+..... .+..++
T Consensus 469 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~s~ 488 (941)
T KOG0351|consen 469 ------------------------------------------------------------KDALLDILEESKLRHPDQSG 488 (941)
T ss_pred ------------------------------------------------------------ccchHHHHHHhhhcCCCCCe
Confidence 0001111222222 355789
Q ss_pred EEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcC
Q 001047 445 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRG 524 (1174)
Q Consensus 445 IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G 524 (1174)
||||.++++|+.++..|+.+++ ..++||+||++.+|+.|...|..+
T Consensus 489 IIYC~sr~~ce~vs~~L~~~~~----------------------------------~a~~YHAGl~~~~R~~Vq~~w~~~ 534 (941)
T KOG0351|consen 489 IIYCLSRKECEQVSAVLRSLGK----------------------------------SAAFYHAGLPPKERETVQKAWMSD 534 (941)
T ss_pred EEEeCCcchHHHHHHHHHHhch----------------------------------hhHhhhcCCCHHHHHHHHHHHhcC
Confidence 9999999999999999998774 577899999999999999999999
Q ss_pred CceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhhC
Q 001047 525 LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 604 (1174)
Q Consensus 525 ~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~~ 604 (1174)
+++|+|||=+|++|||.|+|+.||| |..|.|...|.|-+|||||.| ...+|+++++.. +...+..++..
T Consensus 535 ~~~VivATVAFGMGIdK~DVR~ViH--------~~lPks~E~YYQE~GRAGRDG--~~s~C~l~y~~~-D~~~l~~ll~s 603 (941)
T KOG0351|consen 535 KIRVIVATVAFGMGIDKPDVRFVIH--------YSLPKSFEGYYQEAGRAGRDG--LPSSCVLLYGYA-DISELRRLLTS 603 (941)
T ss_pred CCeEEEEEeeccCCCCCCceeEEEE--------CCCchhHHHHHHhccccCcCC--CcceeEEecchh-HHHHHHHHHHc
Confidence 9999999999999999999999999 999999999999999999999 788999999876 56667777766
Q ss_pred C
Q 001047 605 G 605 (1174)
Q Consensus 605 ~ 605 (1174)
.
T Consensus 604 ~ 604 (941)
T KOG0351|consen 604 G 604 (941)
T ss_pred c
Confidence 6
No 80
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=9.3e-31 Score=267.01 Aligned_cols=303 Identities=18% Similarity=0.222 Sum_probs=227.6
Q ss_pred HHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc--C-CeEEEEcccHH
Q 001047 137 NEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN--Q-RRIFYTTPLKA 213 (1174)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~--g-~rvlvl~Ptra 213 (1174)
..|++|-+.+..+.++-..+.-.|+.+|.++||...-|-+++.+|..|.|||.+|.++.++.+.. | ..++++|.||+
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtre 121 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 121 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHH
Confidence 45777777777777777777778999999999999999999999999999999999999998864 3 37899999999
Q ss_pred HHHHHHH---HHHHHhCCCeEEEEeCCCCCCC-------CCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccc
Q 001047 214 LSNQKFR---EFRETFGDNNVGLLTGDSAINR-------EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283 (1174)
Q Consensus 214 La~Q~~~---~l~~~~g~~~v~lltGd~~~~~-------~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH 283 (1174)
||.|+.+ +|.+++++.++.++.|+..+.. .++|+|+||+++..+..+ ....+.++.++|+|||+
T Consensus 122 lafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~------k~l~lk~vkhFvlDEcd 195 (387)
T KOG0329|consen 122 LAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN------RSLNLKNVKHFVLDECD 195 (387)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh------ccCchhhcceeehhhHH
Confidence 9999865 4566778889999999987653 589999999999988876 56778999999999999
Q ss_pred ccccC-CcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeeccccccccccccccc
Q 001047 284 YLSDI-SRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK 362 (1174)
Q Consensus 284 ~l~d~-~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~ 362 (1174)
.|++. .....+.++.+..|...|++++|||+++. +.-... .+...|+..++ +.+..
T Consensus 196 kmle~lDMrRDvQEifr~tp~~KQvmmfsatlske--iRpvC~-----------kFmQdPmEi~v----------DdE~K 252 (387)
T KOG0329|consen 196 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKE--IRPVCH-----------KFMQDPMEIFV----------DDEAK 252 (387)
T ss_pred HHHHHHHHHHHHHHHhhcCcccceeeeeeeecchh--hHHHHH-----------hhhcCchhhhc----------cchhh
Confidence 98754 56677888999999999999999999742 111111 12233443332 22222
Q ss_pred ccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCC
Q 001047 363 HMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442 (1174)
Q Consensus 363 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 442 (1174)
..-..+.+.|+.+...+. ...+.+++.. ....
T Consensus 253 LtLHGLqQ~YvkLke~eK---------------------------------------------Nrkl~dLLd~---LeFN 284 (387)
T KOG0329|consen 253 LTLHGLQQYYVKLKENEK---------------------------------------------NRKLNDLLDV---LEFN 284 (387)
T ss_pred hhhhhHHHHHHhhhhhhh---------------------------------------------hhhhhhhhhh---hhhc
Confidence 222344344443221110 0011222222 2345
Q ss_pred CeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHh
Q 001047 443 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQ 522 (1174)
Q Consensus 443 ~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~ 522 (1174)
+++||+.|.... .|+
T Consensus 285 QVvIFvKsv~Rl-----------------------------------------------------------------~f~ 299 (387)
T KOG0329|consen 285 QVVIFVKSVQRL-----------------------------------------------------------------SFQ 299 (387)
T ss_pred ceeEeeehhhhh-----------------------------------------------------------------hhh
Confidence 899998765331 021
Q ss_pred cCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCH
Q 001047 523 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 595 (1174)
Q Consensus 523 ~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~ 595 (1174)
.+ +|||+.+.+|+||-.++.||+ |+.|-++..|+||+|||||.| +.|.+|.+.+...+.
T Consensus 300 ---kr-~vat~lfgrgmdiervNi~~N--------Ydmp~~~DtYlHrv~rAgrfG--tkglaitfvs~e~da 358 (387)
T KOG0329|consen 300 ---KR-LVATDLFGRGMDIERVNIVFN--------YDMPEDSDTYLHRVARAGRFG--TKGLAITFVSDENDA 358 (387)
T ss_pred ---hh-hHHhhhhccccCcccceeeec--------cCCCCCchHHHHHhhhhhccc--cccceeehhcchhhH
Confidence 13 899999999999999999999 999999999999999999999 899999998876544
No 81
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=2.4e-29 Score=268.63 Aligned_cols=322 Identities=21% Similarity=0.279 Sum_probs=238.2
Q ss_pred HhccCCcCChHHHhhcCCC-CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH
Q 001047 140 KEFGNEMIDVDELASIYDF-RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQK 218 (1174)
Q Consensus 140 ~~~~~~~~~~~~l~~~~~~-~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~ 218 (1174)
..|+|+....+.+++.|.+ +++|.|..+|++.+.|+++++..|||.||+++|.+|++.. .+-+|+++|..+|+..+
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---dg~alvi~plislmedq 150 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---DGFALVICPLISLMEDQ 150 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---CCceEeechhHHHHHHH
Confidence 3567777777777777765 4999999999999999999999999999999999998765 77899999999999999
Q ss_pred HHHHHHHhCCCeEEEEeCCCC-------------CCCCCcEEEEcHHHHH------HHHhcccccccCCCCCCceeEEEE
Q 001047 219 FREFRETFGDNNVGLLTGDSA-------------INREAQILIMTTEILR------NMLYQSVGMVSSESGLFDVDVIVL 279 (1174)
Q Consensus 219 ~~~l~~~~g~~~v~lltGd~~-------------~~~~~~IlV~Tpe~L~------~~L~~~~~~~~~~~~l~~v~lVIi 279 (1174)
.-.++. +|- ....+...++ .+....+++.|||.+. +.|.+ ......+.+|-+
T Consensus 151 il~lkq-lgi-~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek-------a~~~~~~~~iai 221 (695)
T KOG0353|consen 151 ILQLKQ-LGI-DASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK-------ALEAGFFKLIAI 221 (695)
T ss_pred HHHHHH-hCc-chhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH-------HhhcceeEEEee
Confidence 888887 442 1222222221 2346789999999764 23332 233457889999
Q ss_pred ccccccccC--CcHHHHHH--HHHHCCCCccEEEEccccCCh--HHHHHHHhcccCceeeecCCCCccccEEeecccccc
Q 001047 280 DEVHYLSDI--SRGTVWEE--IIIYCPKEVQIICLSATVANA--DELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTAL 353 (1174)
Q Consensus 280 DEaH~l~d~--~~g~~~e~--ii~~l~~~~qiI~LSATl~n~--~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~ 353 (1174)
||+|+.+.| .|++.+.. ++.+.-+++.+|+|+||..|. ++..+.++.. .+..+...+..-.+.+.+...+
T Consensus 222 devhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie--~~~tf~a~fnr~nl~yev~qkp-- 297 (695)
T KOG0353|consen 222 DEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIE--AAFTFRAGFNRPNLKYEVRQKP-- 297 (695)
T ss_pred cceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHH--hhheeecccCCCCceeEeeeCC--
Confidence 999999976 56665554 355555688999999998763 5555555421 1333333322212221111000
Q ss_pred cccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHH
Q 001047 354 LPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTL 433 (1174)
Q Consensus 354 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 433 (1174)
...+..++-+
T Consensus 298 ----------------------------------------------------------------------~n~dd~~edi 307 (695)
T KOG0353|consen 298 ----------------------------------------------------------------------GNEDDCIEDI 307 (695)
T ss_pred ----------------------------------------------------------------------CChHHHHHHH
Confidence 0011122222
Q ss_pred HHHHhC--CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCH
Q 001047 434 WHLRSR--DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLP 511 (1174)
Q Consensus 434 ~~l~~~--~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~ 511 (1174)
..+.+. .+...||||+|++.|+.++..|.+.|+ ..+.+|+.|.|
T Consensus 308 ~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi----------------------------------~a~~yha~lep 353 (695)
T KOG0353|consen 308 AKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGI----------------------------------HAGAYHANLEP 353 (695)
T ss_pred HHHhccccCCCcceEEEeccccHHHHHHHHHhcCc----------------------------------cccccccccCc
Confidence 222222 445789999999999999999998887 67889999999
Q ss_pred HHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHH----------------------
Q 001047 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQ---------------------- 569 (1174)
Q Consensus 512 ~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Q---------------------- 569 (1174)
.+|.-+-+.|..|+++|+|||-.+.+|||-|++++||+ ...|.|...|.|
T Consensus 354 ~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvih--------hsl~ksienyyqasarillrmtkqknksdtggst 425 (695)
T KOG0353|consen 354 EDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIH--------HSLPKSIENYYQASARILLRMTKQKNKSDTGGST 425 (695)
T ss_pred cccccccccccccceEEEEEEeeecccCCCCCeeEEEe--------cccchhHHHHHHHHHHHHHHHhhhcccccCCCcc
Confidence 99999999999999999999999999999999999999 889999999999
Q ss_pred ---------------------hhcccCCCCCCCccEEEEEeCC
Q 001047 570 ---------------------MAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 570 ---------------------r~GRAGR~G~d~~G~~ill~~~ 591 (1174)
-.|||||.| -...||+++.-
T Consensus 426 qinilevctnfkiffavfsekesgragrd~--~~a~cilyy~~ 466 (695)
T KOG0353|consen 426 QINILEVCTNFKIFFAVFSEKESGRAGRDD--MKADCILYYGF 466 (695)
T ss_pred eeehhhhhccceeeeeeecchhccccccCC--CcccEEEEech
Confidence 789999998 57778888753
No 82
>PRK14701 reverse gyrase; Provisional
Probab=99.96 E-value=6.8e-29 Score=326.12 Aligned_cols=300 Identities=17% Similarity=0.187 Sum_probs=209.0
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC--
Q 001047 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG-- 227 (1174)
Q Consensus 150 ~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g-- 227 (1174)
+.|++.++|.|+++|+++++.+++|++++++||||+|||++++.+++....+|.+++|++||++|+.|++..+.....
T Consensus 70 ~~f~~~~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 70 EFFEKITGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 456777788999999999999999999999999999999977666665555788999999999999999999998543
Q ss_pred --CCeEEEEeCCCCCC-----------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccccc-------
Q 001047 228 --DNNVGLLTGDSAIN-----------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD------- 287 (1174)
Q Consensus 228 --~~~v~lltGd~~~~-----------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d------- 287 (1174)
+..+..++|+.+.. .+++|+|+||+.|.+.+... ...++++|||||||+|++
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--------~~~~i~~iVVDEAD~ml~~~knid~ 221 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--------KHLKFDFIFVDDVDAFLKASKNIDR 221 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--------hhCCCCEEEEECceeccccccccch
Confidence 24566777876522 35899999999988765431 125799999999999986
Q ss_pred ----CCcHHHHHH----HHH----------------------HCCCCcc-EEEEccccCChHHHHHHHhcccCceeeecC
Q 001047 288 ----ISRGTVWEE----III----------------------YCPKEVQ-IICLSATVANADELAGWIGQIHGKTELITS 336 (1174)
Q Consensus 288 ----~~~g~~~e~----ii~----------------------~l~~~~q-iI~LSATl~n~~~~~~~l~~~~~~~~~i~~ 336 (1174)
.+|...+.. ++. .++...| ++++|||++.......++.. ...+...
T Consensus 222 ~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~---~l~f~v~ 298 (1638)
T PRK14701 222 SLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRE---LLGFEVG 298 (1638)
T ss_pred hhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhc---CeEEEec
Confidence 356555543 221 2345555 67799999643344444421 1111111
Q ss_pred CCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchh
Q 001047 337 SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKN 416 (1174)
Q Consensus 337 ~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 416 (1174)
..++. +. .+...|+. ..
T Consensus 299 ~~~~~-lr----------------------~i~~~yi~--------------------------------------~~-- 315 (1638)
T PRK14701 299 SGRSA-LR----------------------NIVDVYLN--------------------------------------PE-- 315 (1638)
T ss_pred CCCCC-CC----------------------CcEEEEEE--------------------------------------CC--
Confidence 11110 00 00000000 00
Q ss_pred hhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHH---HHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhh
Q 001047 417 SINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG---CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREP 493 (1174)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~---~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~ 493 (1174)
.... ..+..+....+.++||||++++. |+.++..|...|+
T Consensus 316 ---------~~~k-~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi--------------------------- 358 (1638)
T PRK14701 316 ---------KIIK-EHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGF--------------------------- 358 (1638)
T ss_pred ---------HHHH-HHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHCCC---------------------------
Confidence 0000 11222222224589999999886 5888999987776
Q ss_pred HHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEec----hhhhhcCCcCC-ceEEEecccccCCCCcccc---CHH
Q 001047 494 AIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT----ETLAAGINMPA-RTAVLSSLSKRTASGRIQL---TSN 565 (1174)
Q Consensus 494 l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT----~tla~GIDiP~-v~vVI~~~~k~~~~~~~p~---s~~ 565 (1174)
.+..+||+ |..+++.|++|.++||||| ++++||||+|+ +++||+ ++.|. +..
T Consensus 359 -------~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~--------~~~Pk~~~~~e 418 (1638)
T PRK14701 359 -------KIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVF--------YGVPKFRFRVD 418 (1638)
T ss_pred -------eEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEE--------eCCCCCCcchh
Confidence 68889985 8899999999999999999 58999999999 999999 55555 555
Q ss_pred HHHHh-------------hcccCCCCCC
Q 001047 566 ELFQM-------------AGRAGRRGID 580 (1174)
Q Consensus 566 ~y~Qr-------------~GRAGR~G~d 580 (1174)
.|.|- .|||||.|..
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 419 LEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred hcccchhhhhcchHHHHHhhhhcccCCc
Confidence 55554 5999999943
No 83
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=2.1e-28 Score=297.19 Aligned_cols=337 Identities=16% Similarity=0.153 Sum_probs=211.9
Q ss_pred CCCCCHHHHHHHHHHHc-C--CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC--CCeE
Q 001047 157 DFRIDKFQRSSIEAFLR-G--SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG--DNNV 231 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~ll~-g--~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g--~~~v 231 (1174)
.+.++|||.+|+..+.. | ++.+|++|||+|||++++.++... ++++||+||+..|+.||.++|.++++ ...+
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l---~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I 329 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV---KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQI 329 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh---CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceE
Confidence 46799999999999874 3 478999999999999998766543 57899999999999999999999653 3467
Q ss_pred EEEeCCCCCC--CCCcEEEEcHHHHHHHHhcccccccCCCCC--CceeEEEEccccccccCCcHHHHHHHHHHCCCCccE
Q 001047 232 GLLTGDSAIN--REAQILIMTTEILRNMLYQSVGMVSSESGL--FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307 (1174)
Q Consensus 232 ~lltGd~~~~--~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l--~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qi 307 (1174)
+.++|+.... ....|+|+|++++.+...+..........+ ..+++||+||||++. ...+..++..+. ....
T Consensus 330 ~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp----A~~fr~il~~l~-a~~R 404 (732)
T TIGR00603 330 CRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP----AAMFRRVLTIVQ-AHCK 404 (732)
T ss_pred EEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc----HHHHHHHHHhcC-cCcE
Confidence 8888875432 247899999998764322211000000112 468899999999985 355666666654 3457
Q ss_pred EEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCC
Q 001047 308 ICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387 (1174)
Q Consensus 308 I~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 387 (1174)
++||||+...++....+...-|+. ++..++...--.-++.. ....++ -..+.......|+......
T Consensus 405 LGLTATP~ReD~~~~~L~~LiGP~-vye~~~~eLi~~G~LA~-~~~~ev----~v~~t~~~~~~yl~~~~~~-------- 470 (732)
T TIGR00603 405 LGLTATLVREDDKITDLNFLIGPK-LYEANWMELQKKGFIAN-VQCAEV----WCPMTPEFYREYLRENSRK-------- 470 (732)
T ss_pred EEEeecCcccCCchhhhhhhcCCe-eeecCHHHHHhCCcccc-ceEEEE----EecCCHHHHHHHHHhcchh--------
Confidence 999999964332211122212221 11110000000000000 000000 0001111112222110000
Q ss_pred ccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHH---hCCCCCeEEEecCHHHHHHHHHHhhhc
Q 001047 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR---SRDMLPAIWFIFNRRGCDAAVQYLEDC 464 (1174)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~IVF~~sr~~~~~la~~L~~~ 464 (1174)
+ ..+. ...+..+..+..+. ...+.++||||.+...++.++..|
T Consensus 471 ---k------------------------~~l~----~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L--- 516 (732)
T TIGR00603 471 ---R------------------------MLLY----VMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL--- 516 (732)
T ss_pred ---h------------------------hHHh----hhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---
Confidence 0 0000 01112223322222 235679999999988887777655
Q ss_pred CCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcC-CceEEEechhhhhcCCcCC
Q 001047 465 NLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRG-LVKVVFATETLAAGINMPA 543 (1174)
Q Consensus 465 ~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G-~ikVLVAT~tla~GIDiP~ 543 (1174)
++.++||++++.+|..+++.|+.| .+++||+|+++.+|||+|+
T Consensus 517 ------------------------------------~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~ 560 (732)
T TIGR00603 517 ------------------------------------GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPE 560 (732)
T ss_pred ------------------------------------CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCC
Confidence 355689999999999999999975 8899999999999999999
Q ss_pred ceEEEecccccCCCCccc-cCHHHHHHhhcccCCCCCCCc-----cEEEEEeCCCC
Q 001047 544 RTAVLSSLSKRTASGRIQ-LTSNELFQMAGRAGRRGIDNR-----GHVVLVQTPYE 593 (1174)
Q Consensus 544 v~vVI~~~~k~~~~~~~p-~s~~~y~Qr~GRAGR~G~d~~-----G~~ill~~~~~ 593 (1174)
+++||+ .+.+ .|..+|+||+||++|.+.+.. ...|.++++..
T Consensus 561 a~vvI~--------~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 561 ANVLIQ--------ISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred CCEEEE--------eCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 999999 5555 489999999999999985433 23355666543
No 84
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.5e-27 Score=269.82 Aligned_cols=368 Identities=20% Similarity=0.222 Sum_probs=265.8
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHHhCCC---eEE
Q 001047 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATV--ANQRRIFYTTPLKALSNQKFREFRETFGDN---NVG 232 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l--~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~---~v~ 232 (1174)
++..++-.+.+.++..++.+||.|.||||||+.....+.+.- ..|+++-++.|+|.-|..++.++.+..|.. .||
T Consensus 264 LPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVG 343 (902)
T KOG0923|consen 264 LPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVG 343 (902)
T ss_pred CCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccc
Confidence 456778888999999999999999999999998777666543 234569999999999988888888766522 233
Q ss_pred -EEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc---cCCcHHHHHHHHHHCCCCccEE
Q 001047 233 -LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS---DISRGTVWEEIIIYCPKEVQII 308 (1174)
Q Consensus 233 -lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~---d~~~g~~~e~ii~~l~~~~qiI 308 (1174)
-+.-+...+..+-|-+||.|+|++-+.. ...|..+++|||||||... |.-||. + .-+..+.++.+++
T Consensus 344 YsIRFEdcTSekTvlKYMTDGmLlREfL~-------epdLasYSViiiDEAHERTL~TDILfgL-v-KDIar~RpdLKll 414 (902)
T KOG0923|consen 344 YSIRFEDCTSEKTVLKYMTDGMLLREFLS-------EPDLASYSVIIVDEAHERTLHTDILFGL-V-KDIARFRPDLKLL 414 (902)
T ss_pred eEEEeccccCcceeeeeecchhHHHHHhc-------cccccceeEEEeehhhhhhhhhhHHHHH-H-HHHHhhCCcceEE
Confidence 3555666678889999999999988774 6789999999999999854 222222 1 2244556799999
Q ss_pred EEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCc
Q 001047 309 CLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 388 (1174)
Q Consensus 309 ~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 388 (1174)
..|||+ +++.|+.||.. +.++..+.|..|+..+|..... .+|+
T Consensus 415 IsSAT~-DAekFS~fFDd----apIF~iPGRRyPVdi~Yt~~PE-----------------AdYl--------------- 457 (902)
T KOG0923|consen 415 ISSATM-DAEKFSAFFDD----APIFRIPGRRYPVDIFYTKAPE-----------------ADYL--------------- 457 (902)
T ss_pred eecccc-CHHHHHHhccC----CcEEeccCcccceeeecccCCc-----------------hhHH---------------
Confidence 999998 89999999985 8899999999999887754220 1122
Q ss_pred cccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHH-hCCCCCeEEEecCHHHHHHHHHHhhhcCCC
Q 001047 389 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR-SRDMLPAIWFIFNRRGCDAAVQYLEDCNLL 467 (1174)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~IVF~~sr~~~~~la~~L~~~~~~ 467 (1174)
...+..+.+++ ..+.+-+|||.....+.+...+.|...
T Consensus 458 --------------------------------------dAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~--- 496 (902)
T KOG0923|consen 458 --------------------------------------DAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKER--- 496 (902)
T ss_pred --------------------------------------HHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHH---
Confidence 11122222222 235678999999999877766655411
Q ss_pred CHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEE
Q 001047 468 DECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547 (1174)
Q Consensus 468 ~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vV 547 (1174)
...+.....+ --|.++|+.|+...+..|++.-..|-.||++||++++..|.|+++.+|
T Consensus 497 -----------~~~LGski~e-----------liv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yV 554 (902)
T KOG0923|consen 497 -----------CRRLGSKIRE-----------LIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYV 554 (902)
T ss_pred -----------HHHhccccce-----------EEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEE
Confidence 1111111111 147899999999999999999999999999999999999999999999
Q ss_pred Eecccc----c---CCC---CccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhhCCCcceeeeeccch
Q 001047 548 LSSLSK----R---TAS---GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY 617 (1174)
Q Consensus 548 I~~~~k----~---~~~---~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~~~~~pl~S~f~~~y 617 (1174)
|+.+.- | .|. .-.|+|.++..||+|||||.| .|.||-+++.+. |.+-+-..+.| +-+-.+.-
T Consensus 555 iDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~~a----Y~~eLE~~t~P-EIqRtnL~ 626 (902)
T KOG0923|consen 555 IDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTAWA----YEHELEEMTVP-EIQRTNLG 626 (902)
T ss_pred ecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeechhh----hhhhhccCCCc-ceeeccch
Confidence 986532 2 222 236999999999999999997 999998887643 33322222222 33344456
Q ss_pred hHHHHHhhhchhccccCchhHHHHHHhCCCHHHHHHHHHhhHHhhhcc
Q 001047 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665 (1174)
Q Consensus 618 ~~vlnll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sf~~~~~~ 665 (1174)
|.||+|+. + | +.+++...|.+-...
T Consensus 627 nvVL~LkS---L---------------G-----I~Dl~~FdFmDpPp~ 651 (902)
T KOG0923|consen 627 NVVLLLKS---L---------------G-----IHDLIHFDFLDPPPT 651 (902)
T ss_pred hHHHHHHh---c---------------C-----cchhcccccCCCCCh
Confidence 77888865 1 3 567777777665554
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.96 E-value=2.6e-27 Score=294.58 Aligned_cols=333 Identities=22% Similarity=0.266 Sum_probs=215.7
Q ss_pred CCCCCCHHHHHHHHHHHcC---CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEE
Q 001047 156 YDFRIDKFQRSSIEAFLRG---SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232 (1174)
Q Consensus 156 ~~~~~~~~Q~~ai~~ll~g---~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ 232 (1174)
.++.+++.|+++++.+.++ +++++.|+||||||.+|+.++...+..|+++||++|+++|+.|+++.|++.|| ..+.
T Consensus 141 ~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~v~ 219 (679)
T PRK05580 141 EPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFG-APVA 219 (679)
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhC-CCEE
Confidence 4567999999999999874 78999999999999999999988888899999999999999999999999887 4688
Q ss_pred EEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCc-HH--HHHHH-
Q 001047 233 LLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISR-GT--VWEEI- 297 (1174)
Q Consensus 233 lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~-g~--~~e~i- 297 (1174)
.++|+.+. +..++|+|+|++.+. ..+.++++|||||+|..+.... ++ ....+
T Consensus 220 ~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va 286 (679)
T PRK05580 220 VLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA 286 (679)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------------ccccCCCEEEEECCCccccccCcCCCCcHHHHH
Confidence 88887642 246799999998653 1367899999999998763321 11 11222
Q ss_pred -HHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCc----cccEEeecccccccccccccccccchhhhhhh
Q 001047 298 -IIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRP----VPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 372 (1174)
Q Consensus 298 -i~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rp----vpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 372 (1174)
+.....+.++|++|||++ .+. |.....|....+....|+ .|....+ +. .... .
T Consensus 287 ~~ra~~~~~~~il~SATps-~~s---~~~~~~g~~~~~~l~~r~~~~~~p~v~~i----------d~-----~~~~--~- 344 (679)
T PRK05580 287 VVRAKLENIPVVLGSATPS-LES---LANAQQGRYRLLRLTKRAGGARLPEVEII----------DM-----RELL--R- 344 (679)
T ss_pred HHHhhccCCCEEEEcCCCC-HHH---HHHHhccceeEEEeccccccCCCCeEEEE----------ec-----hhhh--h-
Confidence 233356789999999975 333 332233444444433332 1111000 00 0000 0
Q ss_pred hhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHH
Q 001047 373 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 452 (1174)
Q Consensus 373 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~ 452 (1174)
. .. . ..+ ...+++.+..... .+.++|||++.+.
T Consensus 345 ----------------------~-~~-~----------~~l------------s~~l~~~i~~~l~-~g~qvll~~nrrG 377 (679)
T PRK05580 345 ----------------------G-EN-G----------SFL------------SPPLLEAIKQRLE-RGEQVLLFLNRRG 377 (679)
T ss_pred ----------------------h-cc-c----------CCC------------CHHHHHHHHHHHH-cCCeEEEEEcCCC
Confidence 0 00 0 000 1122333333222 3468999999865
Q ss_pred HHHHHHHHhhhcCCCCHHhHH-----------------------------------------HHHHHHHHHHhhCCccch
Q 001047 453 GCDAAVQYLEDCNLLDECEMS-----------------------------------------EVELALKRFRILYPDAVR 491 (1174)
Q Consensus 453 ~~~~la~~L~~~~~~~~~e~~-----------------------------------------~i~~~~~~~~~~~~~~~~ 491 (1174)
.+-.+ .|..||....|..+ .++...+.+...+|+
T Consensus 378 y~~~~--~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~--- 452 (679)
T PRK05580 378 YAPFL--LCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPE--- 452 (679)
T ss_pred CCCce--EhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCC---
Confidence 42111 11122211111111 122222222222222
Q ss_pred hhHHhhhccceeEecCCCCH--HHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCcccc-------
Q 001047 492 EPAIKGLLKGVAAHHAGCLP--IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL------- 562 (1174)
Q Consensus 492 ~~l~~~L~~gv~~~Hsgl~~--~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~------- 562 (1174)
..|...|+++.+ ..++.+++.|++|+++|||+|+++++|+|+|++++|+.-. .+.++
T Consensus 453 --------~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~------aD~~l~~pdfra 518 (679)
T PRK05580 453 --------ARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLD------ADLGLFSPDFRA 518 (679)
T ss_pred --------CcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEc------CchhccCCccch
Confidence 368899999874 5789999999999999999999999999999999884311 22222
Q ss_pred ---CHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 563 ---TSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 563 ---s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
....|+|++|||||.+ ..|.+++.....
T Consensus 519 ~Er~~~~l~q~~GRagR~~--~~g~viiqT~~p 549 (679)
T PRK05580 519 SERTFQLLTQVAGRAGRAE--KPGEVLIQTYHP 549 (679)
T ss_pred HHHHHHHHHHHHhhccCCC--CCCEEEEEeCCC
Confidence 3467999999999987 789988766543
No 86
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=4.8e-27 Score=288.06 Aligned_cols=364 Identities=17% Similarity=0.181 Sum_probs=229.3
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC--
Q 001047 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG-- 227 (1174)
Q Consensus 150 ~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g-- 227 (1174)
+......+..|+++|..+...+.+|+ |+.+.||+|||++|.+|++.....|..+.|++||+.||.|.+..+...+.
T Consensus 69 ea~~R~~g~~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~l 146 (790)
T PRK09200 69 EAAKRVLGMRPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFL 146 (790)
T ss_pred HHHHHHhCCCCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 34455667889999999999888876 99999999999999999998778899999999999999999999888654
Q ss_pred CCeEEEEeCCCC-C-----CCCCcEEEEcHHHH-HHHHhcccccccCCCCCCceeEEEEccccccc-cCC----------
Q 001047 228 DNNVGLLTGDSA-I-----NREAQILIMTTEIL-RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS-DIS---------- 289 (1174)
Q Consensus 228 ~~~v~lltGd~~-~-----~~~~~IlV~Tpe~L-~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~-d~~---------- 289 (1174)
+++++++.|+.+ . ...++|+|+||+.| .++|......-.....++.+.++|+||||.|+ |..
T Consensus 147 Gl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~ 226 (790)
T PRK09200 147 GLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKP 226 (790)
T ss_pred CCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCC
Confidence 368999999876 2 23689999999988 34443321110122356789999999999885 211
Q ss_pred -----cHHHHHHHHHHCCC--------CccEEEEccc----------cCC---h--HHHHHHHhcc-------c------
Q 001047 290 -----RGTVWEEIIIYCPK--------EVQIICLSAT----------VAN---A--DELAGWIGQI-------H------ 328 (1174)
Q Consensus 290 -----~g~~~e~ii~~l~~--------~~qiI~LSAT----------l~n---~--~~~~~~l~~~-------~------ 328 (1174)
....+..++..+.. ..+.+.+|.. ++| . ..+..|+... +
T Consensus 227 ~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYi 306 (790)
T PRK09200 227 RVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYI 306 (790)
T ss_pred ccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEE
Confidence 12223334444422 2234444431 111 1 1222333221 0
Q ss_pred ---CceeeecC-CCCccc----------------------------------c-EE--eecccccccccccccccccchh
Q 001047 329 ---GKTELITS-SRRPVP----------------------------------L-TW--YFSTKTALLPLLDEKGKHMNRK 367 (1174)
Q Consensus 329 ---~~~~~i~~-~~rpvp----------------------------------l-~~--~~~~~~~~~~~~~~~~~~~~~~ 367 (1174)
+.+.++.. ..|..| . .. .+.+-.+... . ....
T Consensus 307 V~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~---t----~~~e 379 (790)
T PRK09200 307 VYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAK---T----EEKE 379 (790)
T ss_pred EECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCCh---H----HHHH
Confidence 11122111 111100 0 11 1111111100 0 0011
Q ss_pred hhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEE
Q 001047 368 LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447 (1174)
Q Consensus 368 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF 447 (1174)
+ ...........+..+.. .+ . . . ...+ +. -.......+...+.... ..+.|+|||
T Consensus 380 ~-~~~Y~l~v~~IPt~kp~---~r---~--d-~-~~~i-------~~------~~~~K~~al~~~i~~~~-~~~~pvLIf 434 (790)
T PRK09200 380 F-FEVYNMEVVQIPTNRPI---IR---I--D-Y-PDKV-------FV------TLDEKYKAVIEEVKERH-ETGRPVLIG 434 (790)
T ss_pred H-HHHhCCcEEECCCCCCc---cc---c--c-C-CCeE-------Ec------CHHHHHHHHHHHHHHHH-hcCCCEEEE
Confidence 1 11111111111111100 00 0 0 0 0000 00 00011222233333222 356799999
Q ss_pred ecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCce
Q 001047 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVK 527 (1174)
Q Consensus 448 ~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ik 527 (1174)
|.|++.++.++..|...|+ .+..+||.+.+.++..+...++.| +
T Consensus 435 ~~t~~~se~l~~~L~~~gi----------------------------------~~~~L~~~~~~~e~~~i~~ag~~g--~ 478 (790)
T PRK09200 435 TGSIEQSETFSKLLDEAGI----------------------------------PHNLLNAKNAAKEAQIIAEAGQKG--A 478 (790)
T ss_pred eCcHHHHHHHHHHHHHCCC----------------------------------CEEEecCCccHHHHHHHHHcCCCC--e
Confidence 9999999999999987776 678899999999998888888777 7
Q ss_pred EEEechhhhhcCCc---CCce-----EEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 528 VVFATETLAAGINM---PART-----AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 528 VLVAT~tla~GIDi---P~v~-----vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
|+|||++++||+|| |.+. +||+ ++.|.+...|.||+|||||.| ..|.++++.+..+
T Consensus 479 VlIATdmAgRG~DI~l~~~V~~~GGL~VI~--------~d~p~s~r~y~qr~GRtGR~G--~~G~s~~~is~eD 542 (790)
T PRK09200 479 VTVATNMAGRGTDIKLGEGVHELGGLAVIG--------TERMESRRVDLQLRGRSGRQG--DPGSSQFFISLED 542 (790)
T ss_pred EEEEccchhcCcCCCcccccccccCcEEEe--------ccCCCCHHHHHHhhccccCCC--CCeeEEEEEcchH
Confidence 99999999999999 7998 9999 899999999999999999999 8999999988755
No 87
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=8.6e-27 Score=272.95 Aligned_cols=325 Identities=19% Similarity=0.244 Sum_probs=232.6
Q ss_pred CCcCChHHHhhcCCCCCCHHHHHHHHHHHcC------CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHH
Q 001047 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRG------SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217 (1174)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g------~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q 217 (1174)
........+.+..||++|.-|++++..|... -+=++++.-|||||+++.++++..+..|.++..++||--||+|
T Consensus 247 ~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~Q 326 (677)
T COG1200 247 ANGELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQ 326 (677)
T ss_pred ccHHHHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHH
Confidence 3334566778889999999999999998854 2569999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC--CeEEEEeCCCC-----------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc
Q 001047 218 KFREFRETFGD--NNVGLLTGDSA-----------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 218 ~~~~l~~~~g~--~~v~lltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~ 284 (1174)
.|..+.++|+. +.|+++||... .+...+|+|+|-.-+. ....+.++++||+||-|+
T Consensus 327 H~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ-----------d~V~F~~LgLVIiDEQHR 395 (677)
T COG1200 327 HYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ-----------DKVEFHNLGLVIIDEQHR 395 (677)
T ss_pred HHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh-----------cceeecceeEEEEecccc
Confidence 99999998873 68999999775 2357999999976443 355688999999999999
Q ss_pred cccCCcHHHHHHHHHHCCC-CccEEEEccccCChHHHHHHHhcccCceeeecC-CCCccccEEeeccccccccccccccc
Q 001047 285 LSDISRGTVWEEIIIYCPK-EVQIICLSATVANADELAGWIGQIHGKTELITS-SRRPVPLTWYFSTKTALLPLLDEKGK 362 (1174)
Q Consensus 285 l~d~~~g~~~e~ii~~l~~-~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~-~~rpvpl~~~~~~~~~~~~~~~~~~~ 362 (1174)
||..-...+..-.. .+.++.||||| =++.++--.-... .+.++.. +.-..|+..+...
T Consensus 396 -----FGV~QR~~L~~KG~~~Ph~LvMTATP-IPRTLAlt~fgDl-dvS~IdElP~GRkpI~T~~i~------------- 455 (677)
T COG1200 396 -----FGVHQRLALREKGEQNPHVLVMTATP-IPRTLALTAFGDL-DVSIIDELPPGRKPITTVVIP------------- 455 (677)
T ss_pred -----ccHHHHHHHHHhCCCCCcEEEEeCCC-chHHHHHHHhccc-cchhhccCCCCCCceEEEEec-------------
Confidence 56655555555555 68899999997 3444442221100 0111110 0001122222111
Q ss_pred ccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCC
Q 001047 363 HMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442 (1174)
Q Consensus 363 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 442 (1174)
....+.+++.+..-.. .+.
T Consensus 456 ------------------------------------------------------------~~~~~~v~e~i~~ei~-~Gr 474 (677)
T COG1200 456 ------------------------------------------------------------HERRPEVYERIREEIA-KGR 474 (677)
T ss_pred ------------------------------------------------------------cccHHHHHHHHHHHHH-cCC
Confidence 0112233333333222 457
Q ss_pred CeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHh
Q 001047 443 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQ 522 (1174)
Q Consensus 443 ~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~ 522 (1174)
++.|.|+-..+.+.+- + ......++.+...+++ ..|+.+||.|.+.+|+.|++.|+
T Consensus 475 QaY~VcPLIeESE~l~--l-----------~~a~~~~~~L~~~~~~-----------~~vgL~HGrm~~~eKd~vM~~Fk 530 (677)
T COG1200 475 QAYVVCPLIEESEKLE--L-----------QAAEELYEELKSFLPE-----------LKVGLVHGRMKPAEKDAVMEAFK 530 (677)
T ss_pred EEEEEeccccccccch--h-----------hhHHHHHHHHHHHccc-----------ceeEEEecCCChHHHHHHHHHHH
Confidence 8889998777665322 0 1111122222222222 35999999999999999999999
Q ss_pred cCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 523 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 523 ~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
+|+++|||||.+.+.|||+|+.++.|... .--...+...|..||.||.+ ..++|++++.+..
T Consensus 531 ~~e~~ILVaTTVIEVGVdVPnATvMVIe~-------AERFGLaQLHQLRGRVGRG~--~qSyC~Ll~~~~~ 592 (677)
T COG1200 531 EGEIDILVATTVIEVGVDVPNATVMVIEN-------AERFGLAQLHQLRGRVGRGD--LQSYCVLLYKPPL 592 (677)
T ss_pred cCCCcEEEEeeEEEecccCCCCeEEEEec-------hhhhhHHHHHHhccccCCCC--cceEEEEEeCCCC
Confidence 99999999999999999999999976521 11246788999999999987 8999999998765
No 88
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=3.5e-27 Score=283.48 Aligned_cols=135 Identities=20% Similarity=0.175 Sum_probs=106.1
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC--
Q 001047 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG-- 227 (1174)
Q Consensus 150 ~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g-- 227 (1174)
+......++.|+++|..+++.++.|+ |+.+.||+|||++|.+|++.....|..++|++||+.||.|.++.+...+.
T Consensus 94 Ea~~R~lg~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 94 EASGRVLGQRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred HHHHHHhCCCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 34556677889999999999999998 99999999999999999999888899999999999999999999988653
Q ss_pred CCeEEEEeCCCCCC-----CCCcEEEEcHHHH-HHHHhccccc-------------------ccCCCCCCceeEEEEccc
Q 001047 228 DNNVGLLTGDSAIN-----REAQILIMTTEIL-RNMLYQSVGM-------------------VSSESGLFDVDVIVLDEV 282 (1174)
Q Consensus 228 ~~~v~lltGd~~~~-----~~~~IlV~Tpe~L-~~~L~~~~~~-------------------~~~~~~l~~v~lVIiDEa 282 (1174)
++++++++|+.+.. ..++|+|+|..-| .+.|...... -........+.+.|||||
T Consensus 172 Glsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEv 251 (656)
T PRK12898 172 GLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEA 251 (656)
T ss_pred CCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecc
Confidence 36899999986532 3789999999855 2222221100 011233467889999999
Q ss_pred cccc
Q 001047 283 HYLS 286 (1174)
Q Consensus 283 H~l~ 286 (1174)
|.++
T Consensus 252 DSiL 255 (656)
T PRK12898 252 DSVL 255 (656)
T ss_pred ccee
Confidence 9764
No 89
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.95 E-value=5.7e-27 Score=303.11 Aligned_cols=272 Identities=20% Similarity=0.208 Sum_probs=184.3
Q ss_pred HhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHHhCC--
Q 001047 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSNQKFREFRETFGD-- 228 (1174)
Q Consensus 152 l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~g~-- 228 (1174)
|....++.|+++|+.+++.++.|++++++||||+|||+ |.+++...+ .++.+++|++||++|+.|+++.+.+++..
T Consensus 71 f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~ 149 (1171)
T TIGR01054 71 FKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAG 149 (1171)
T ss_pred HHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcC
Confidence 55566789999999999999999999999999999998 445554433 46789999999999999999999986532
Q ss_pred C---eEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccccc-------
Q 001047 229 N---NVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD------- 287 (1174)
Q Consensus 229 ~---~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d------- 287 (1174)
. .++.++|+.+. +.+++|+|+||++|.+.+.. . . .++++||+||||.|++
T Consensus 150 i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~-------l-~-~~~~~iVvDEaD~~L~~~k~vd~ 220 (1171)
T TIGR01054 150 VGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE-------L-G-PKFDFIFVDDVDALLKASKNVDK 220 (1171)
T ss_pred CceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH-------h-c-CCCCEEEEeChHhhhhccccHHH
Confidence 1 24567787643 23589999999999887653 1 1 1899999999999987
Q ss_pred ----CCcHH-HHHHH----------------------HHHCCCCcc--EEEEccccCChHHHH-HHHhcccCceeeecCC
Q 001047 288 ----ISRGT-VWEEI----------------------IIYCPKEVQ--IICLSATVANADELA-GWIGQIHGKTELITSS 337 (1174)
Q Consensus 288 ----~~~g~-~~e~i----------------------i~~l~~~~q--iI~LSATl~n~~~~~-~~l~~~~~~~~~i~~~ 337 (1174)
.+|.. .++.+ +..++...| ++++|||..+. ... .++...
T Consensus 221 il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~-~~~~~l~r~l---------- 289 (1171)
T TIGR01054 221 LLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPR-GKRAKLFREL---------- 289 (1171)
T ss_pred HHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCcc-ccHHHHcccc----------
Confidence 34443 23332 223455555 67789994221 111 111110
Q ss_pred CCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhh
Q 001047 338 RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNS 417 (1174)
Q Consensus 338 ~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 417 (1174)
+...+.... ...+.+...|+ ...
T Consensus 290 -----l~~~v~~~~-----------~~~r~I~~~~~----------------------------------------~~~- 312 (1171)
T TIGR01054 290 -----LGFEVGGGS-----------DTLRNVVDVYV----------------------------------------EDE- 312 (1171)
T ss_pred -----cceEecCcc-----------ccccceEEEEE----------------------------------------ecc-
Confidence 000000000 00000000000 000
Q ss_pred hhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCH---HHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhH
Q 001047 418 INAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR---RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA 494 (1174)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr---~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l 494 (1174)
.....+.+++. .-+.++||||+++ +.|+.++..|.+.|+
T Consensus 313 ------~~~~~L~~ll~----~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~---------------------------- 354 (1171)
T TIGR01054 313 ------DLKETLLEIVK----KLGTGGIVYVSIDYGKEKAEEIAEFLENHGV---------------------------- 354 (1171)
T ss_pred ------cHHHHHHHHHH----HcCCCEEEEEeccccHHHHHHHHHHHHhCCc----------------------------
Confidence 00011122222 2235799999999 999999999987776
Q ss_pred HhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEe----chhhhhcCCcCC-ceEEEe
Q 001047 495 IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFA----TETLAAGINMPA-RTAVLS 549 (1174)
Q Consensus 495 ~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVA----T~tla~GIDiP~-v~vVI~ 549 (1174)
.+..+||+|+ +.+++.|++|+++|||| |++++||||+|+ +++||+
T Consensus 355 ------~a~~lhg~~~----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~ 404 (1171)
T TIGR01054 355 ------KAVAYHATKP----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVF 404 (1171)
T ss_pred ------eEEEEeCCCC----HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEE
Confidence 6889999997 36889999999999999 489999999999 799999
No 90
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=1.2e-26 Score=285.51 Aligned_cols=318 Identities=19% Similarity=0.268 Sum_probs=242.9
Q ss_pred ccCCcCChHHHhhcCCCCCCHHHHHHHHHHHc----C--CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q 001047 142 FGNEMIDVDELASIYDFRIDKFQRSSIEAFLR----G--SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215 (1174)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~----g--~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa 215 (1174)
|+........|...|+|.-|+-|..||..+.+ + -|=+|||.-|.|||.|++-+++.++..|+.|.+++||.-||
T Consensus 577 f~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA 656 (1139)
T COG1197 577 FPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLA 656 (1139)
T ss_pred CCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhH
Confidence 44455667789999999999999999999874 3 37899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC--eEEEEeCCCC-----------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccc
Q 001047 216 NQKFREFRETFGDN--NVGLLTGDSA-----------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEV 282 (1174)
Q Consensus 216 ~Q~~~~l~~~~g~~--~v~lltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEa 282 (1174)
.|.|+.|+++|.+. +|..++-=.+ .+...+|+|+|--.|. .+..+.+++++||||-
T Consensus 657 ~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~-----------kdv~FkdLGLlIIDEE 725 (1139)
T COG1197 657 QQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLS-----------KDVKFKDLGLLIIDEE 725 (1139)
T ss_pred HHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhC-----------CCcEEecCCeEEEech
Confidence 99999999999875 4555543221 2357899999975432 3556789999999999
Q ss_pred cccccCCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeeccccccccccccccc
Q 001047 283 HYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK 362 (1174)
Q Consensus 283 H~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~ 362 (1174)
|+ ||+.-.+-++.+..++.++-||||| =++.+..-+..++.-..+-+.+....|+..|+...+
T Consensus 726 qR-----FGVk~KEkLK~Lr~~VDvLTLSATP-IPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d----------- 788 (1139)
T COG1197 726 QR-----FGVKHKEKLKELRANVDVLTLSATP-IPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYD----------- 788 (1139)
T ss_pred hh-----cCccHHHHHHHHhccCcEEEeeCCC-CcchHHHHHhcchhhhhccCCCCCCcceEEEEecCC-----------
Confidence 99 7888888899999999999999996 345555555544432222233444556655543311
Q ss_pred ccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHH-HHHHHhCCC
Q 001047 363 HMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT-LWHLRSRDM 441 (1174)
Q Consensus 363 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-l~~l~~~~~ 441 (1174)
.. .+.+. +.++. .+
T Consensus 789 ---~~------------------------------------------------------------~ireAI~REl~--Rg 803 (1139)
T COG1197 789 ---DL------------------------------------------------------------LIREAILRELL--RG 803 (1139)
T ss_pred ---hH------------------------------------------------------------HHHHHHHHHHh--cC
Confidence 00 01111 12221 34
Q ss_pred CCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHH
Q 001047 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 521 (1174)
Q Consensus 442 ~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F 521 (1174)
+++-+..|..+..+..+..|+.. .|+. .|++-||.|+..+-+.|+..|
T Consensus 804 GQvfYv~NrV~~Ie~~~~~L~~L---------------------VPEa-----------rI~vaHGQM~e~eLE~vM~~F 851 (1139)
T COG1197 804 GQVFYVHNRVESIEKKAERLREL---------------------VPEA-----------RIAVAHGQMRERELEEVMLDF 851 (1139)
T ss_pred CEEEEEecchhhHHHHHHHHHHh---------------------CCce-----------EEEEeecCCCHHHHHHHHHHH
Confidence 67777777788888888877632 2222 699999999999999999999
Q ss_pred hcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 522 QRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 522 ~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
-+|..+|||||.+.+.|||||+.+.+|... .--...++..|..||.||.. ..|+||+++.+..
T Consensus 852 ~~g~~dVLv~TTIIEtGIDIPnANTiIIe~-------AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~~k 914 (1139)
T COG1197 852 YNGEYDVLVCTTIIETGIDIPNANTIIIER-------ADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPPQK 914 (1139)
T ss_pred HcCCCCEEEEeeeeecCcCCCCCceEEEec-------cccccHHHHHHhccccCCcc--ceEEEEEeecCcc
Confidence 999999999999999999999999887621 12246788999999999987 8999999987644
No 91
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=2.5e-26 Score=272.98 Aligned_cols=326 Identities=20% Similarity=0.214 Sum_probs=208.7
Q ss_pred hcCCCCCCHHHHHHHHHHHc----CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCC
Q 001047 154 SIYDFRIDKFQRSSIEAFLR----GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDN 229 (1174)
Q Consensus 154 ~~~~~~~~~~Q~~ai~~ll~----g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~ 229 (1174)
..+.+.++++|++|+..+.+ ++..++++|||+|||+++...+... +.++||++|+++|+.||++.+...++..
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~---~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL---KRSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh---cCCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 34556799999999999998 8899999999999999998887765 4459999999999999998888877653
Q ss_pred -eEEEEeCCCCCCCCCcEEEEcHHHHHHHH-hcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccE
Q 001047 230 -NVGLLTGDSAINREAQILIMTTEILRNML-YQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307 (1174)
Q Consensus 230 -~v~lltGd~~~~~~~~IlV~Tpe~L~~~L-~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qi 307 (1174)
.+|.+.|+........|.|+|.+.+.... . .....+++++||+||||++....+....+.+... ..+
T Consensus 108 ~~~g~~~~~~~~~~~~~i~vat~qtl~~~~~l-------~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~----~~~ 176 (442)
T COG1061 108 DEIGIYGGGEKELEPAKVTVATVQTLARRQLL-------DEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAA----YPR 176 (442)
T ss_pred cccceecCceeccCCCcEEEEEhHHHhhhhhh-------hhhcccccCEEEEEccccCCcHHHHHHHHhhhcc----cce
Confidence 57888776653333689999999888741 1 1222347999999999998764444333332222 228
Q ss_pred EEEccccCChH-----HHHHHHhcccCceeeecCC-------CCccccEEeecccccccccccccccccchhhhhhhhhc
Q 001047 308 ICLSATVANAD-----ELAGWIGQIHGKTELITSS-------RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQL 375 (1174)
Q Consensus 308 I~LSATl~n~~-----~~~~~l~~~~~~~~~i~~~-------~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 375 (1174)
++||||+...+ ++...++ + .+.... ..-.|..++..... +...-...|...
T Consensus 177 LGLTATp~R~D~~~~~~l~~~~g----~-~vy~~~~~~li~~g~Lap~~~~~i~~~------------~t~~~~~~~~~~ 239 (442)
T COG1061 177 LGLTATPEREDGGRIGDLFDLIG----P-IVYEVSLKELIDEGYLAPYKYVEIKVT------------LTEDEEREYAKE 239 (442)
T ss_pred eeeccCceeecCCchhHHHHhcC----C-eEeecCHHHHHhCCCccceEEEEEEec------------cchHHHHHhhhh
Confidence 99999986433 2222222 0 011000 00111111110000 000000000000
Q ss_pred ccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhC--CCCCeEEEecCHHH
Q 001047 376 STSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR--DMLPAIWFIFNRRG 453 (1174)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~IVF~~sr~~ 453 (1174)
..... ........ .........+. .........+..+... ...+++||+.+...
T Consensus 240 ~~~~~----------~~~~~~~~-------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~ 295 (442)
T COG1061 240 SARFR----------ELLRARGT-------------LRAENEARRIA-IASERKIAAVRGLLLKHARGDKTLIFASDVEH 295 (442)
T ss_pred hhhhh----------hhhhhhhh-------------hhHHHHHHHHh-hccHHHHHHHHHHHHHhcCCCcEEEEeccHHH
Confidence 00000 00000000 00000000000 0111222222322221 35699999999999
Q ss_pred HHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEech
Q 001047 454 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE 533 (1174)
Q Consensus 454 ~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~ 533 (1174)
++.++..+...+ ++..+.+..++.+|..+++.|+.|.+++||++.
T Consensus 296 a~~i~~~~~~~~-----------------------------------~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~ 340 (442)
T COG1061 296 AYEIAKLFLAPG-----------------------------------IVEAITGETPKEEREAILERFRTGGIKVLVTVK 340 (442)
T ss_pred HHHHHHHhcCCC-----------------------------------ceEEEECCCCHHHHHHHHHHHHcCCCCEEEEee
Confidence 999998886433 256788999999999999999999999999999
Q ss_pred hhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCC
Q 001047 534 TLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRR 577 (1174)
Q Consensus 534 tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~ 577 (1174)
++.+|+|+|+++++|. .....|...|+||+||.-|.
T Consensus 341 vl~EGvDiP~~~~~i~--------~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 341 VLDEGVDIPDADVLII--------LRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred eccceecCCCCcEEEE--------eCCCCcHHHHHHHhhhhccC
Confidence 9999999999999998 56678999999999999994
No 92
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.95 E-value=2.7e-26 Score=278.67 Aligned_cols=357 Identities=17% Similarity=0.184 Sum_probs=211.2
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC--CCeEEEEeC
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG--DNNVGLLTG 236 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g--~~~v~lltG 236 (1174)
.++|+|.+++..+.-++..|+.++||+|||++|.+|++.....|+.++|++|++.||.|+++.+...+. +.+++++.+
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~ 147 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVV 147 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEEC
Confidence 345555556655554455799999999999999999987777888999999999999999998876432 256777666
Q ss_pred CCC---CC-------CCCcEEEEcHHHH-HHHHhcccccccCCCCCCceeEEEEccccccc-cCC---------------
Q 001047 237 DSA---IN-------REAQILIMTTEIL-RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS-DIS--------------- 289 (1174)
Q Consensus 237 d~~---~~-------~~~~IlV~Tpe~L-~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~-d~~--------------- 289 (1174)
+.. .. .+++|+|+||+.| .+.|......-.....+.++.++|+||||.|+ |..
T Consensus 148 ~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~~~ 227 (762)
T TIGR03714 148 DDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSN 227 (762)
T ss_pred CCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccchH
Confidence 421 11 3789999999998 34442211000012346789999999999984 111
Q ss_pred cHHHHHHHHHHCCCC--------ccEEEEccc----------cCC---h--HHHHHHHhcc----------------cCc
Q 001047 290 RGTVWEEIIIYCPKE--------VQIICLSAT----------VAN---A--DELAGWIGQI----------------HGK 330 (1174)
Q Consensus 290 ~g~~~e~ii~~l~~~--------~qiI~LSAT----------l~n---~--~~~~~~l~~~----------------~~~ 330 (1174)
.......++..+.++ -+.+.||-. ++| + ..+..|+... .+.
T Consensus 228 ~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~ 307 (762)
T TIGR03714 228 LYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGE 307 (762)
T ss_pred HHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEECCE
Confidence 112222344444321 233444421 111 0 1111121110 011
Q ss_pred eeeec-CCCCccc----------------------------------cEEeecccccccccccccccccc--hhhhhhhh
Q 001047 331 TELIT-SSRRPVP----------------------------------LTWYFSTKTALLPLLDEKGKHMN--RKLSLNYL 373 (1174)
Q Consensus 331 ~~~i~-~~~rpvp----------------------------------l~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~l 373 (1174)
+.++. ...|..| ....|..-.+ -.|+... ..+ ....
T Consensus 308 v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~G------mTGTa~~~~~Ef-~~iY 380 (762)
T TIGR03714 308 VVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSG------MTGTGKVAEKEF-IETY 380 (762)
T ss_pred EEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcc------cCCCChhHHHHH-HHHh
Confidence 11211 1111100 0112111011 1111111 111 1111
Q ss_pred hcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHH
Q 001047 374 QLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453 (1174)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~ 453 (1174)
.......+..+. ..+ . . . .+. +..........+...+.... ..+.|+||||+|+..
T Consensus 381 ~l~v~~IPt~kp---~~r---~--d-~-~d~-------------i~~~~~~K~~ai~~~i~~~~-~~~~pvLIft~s~~~ 436 (762)
T TIGR03714 381 SLSVVKIPTNKP---IIR---I--D-Y-PDK-------------IYATLPEKLMATLEDVKEYH-ETGQPVLLITGSVEM 436 (762)
T ss_pred CCCEEEcCCCCC---eee---e--e-C-CCe-------------EEECHHHHHHHHHHHHHHHh-hCCCCEEEEECcHHH
Confidence 111111111110 000 0 0 0 000 00000011223333343332 346799999999999
Q ss_pred HHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEech
Q 001047 454 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE 533 (1174)
Q Consensus 454 ~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~ 533 (1174)
++.++..|...|+ .+..+||.+.+.++..+...|+.| .|+|||+
T Consensus 437 se~ls~~L~~~gi----------------------------------~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATd 480 (762)
T TIGR03714 437 SEIYSELLLREGI----------------------------------PHNLLNAQNAAKEAQIIAEAGQKG--AVTVATS 480 (762)
T ss_pred HHHHHHHHHHCCC----------------------------------CEEEecCCChHHHHHHHHHcCCCC--eEEEEcc
Confidence 9999999987776 577899999999998888888777 7999999
Q ss_pred hhhhcCCcC---------CceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 534 TLAAGINMP---------ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 534 tla~GIDiP---------~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
+++||+||| ++.+|++ ++.|....+ .||+|||||.| ..|.++++.+..+
T Consensus 481 mAgRGtDI~l~~~v~~~GGL~vIit--------~~~ps~rid-~qr~GRtGRqG--~~G~s~~~is~eD 538 (762)
T TIGR03714 481 MAGRGTDIKLGKGVAELGGLAVIGT--------ERMENSRVD-LQLRGRSGRQG--DPGSSQFFVSLED 538 (762)
T ss_pred ccccccCCCCCccccccCCeEEEEe--------cCCCCcHHH-HHhhhcccCCC--CceeEEEEEccch
Confidence 999999999 9999999 777776666 99999999999 8999999998755
No 93
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.95 E-value=7.5e-27 Score=284.90 Aligned_cols=355 Identities=19% Similarity=0.192 Sum_probs=256.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHHhCC---C
Q 001047 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---NQRRIFYTTPLKALSNQKFREFRETFGD---N 229 (1174)
Q Consensus 156 ~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~---~g~rvlvl~PtraLa~Q~~~~l~~~~g~---~ 229 (1174)
-..+.+..+.+.+.++.+++.++|++.||||||+.....|++... ...+++++.|+|--|..+++++...-+. .
T Consensus 170 ~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~ 249 (924)
T KOG0920|consen 170 ESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGE 249 (924)
T ss_pred HhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCC
Confidence 344677899999999999999999999999999999888887653 2348999999997777777777664432 2
Q ss_pred eEEE-EeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc-cCCcHHHHHHHHHHCCCCccE
Q 001047 230 NVGL-LTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS-DISRGTVWEEIIIYCPKEVQI 307 (1174)
Q Consensus 230 ~v~l-ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~-d~~~g~~~e~ii~~l~~~~qi 307 (1174)
.||. +..+......+.+++||+|+|++.|.. ...+.++.+||+||+|... +.+|-..+-+.+....++.++
T Consensus 250 ~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~-------~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lkv 322 (924)
T KOG0920|consen 250 EVGYQVRLESKRSRETRLLFCTTGVLLRRLQS-------DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKV 322 (924)
T ss_pred eeeEEEeeecccCCceeEEEecHHHHHHHhcc-------CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceE
Confidence 3443 455566666799999999999999874 5678899999999999876 335665555555556689999
Q ss_pred EEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCC
Q 001047 308 ICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGG 387 (1174)
Q Consensus 308 I~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 387 (1174)
|+||||+ |++.|.+|++ .+.++....|..|+..+|..... ... .|.. .....+. +.
T Consensus 323 ILMSAT~-dae~fs~YF~----~~pvi~i~grtfpV~~~fLEDil--~~~-------------~~~~---~~~~~~~-~~ 378 (924)
T KOG0920|consen 323 ILMSATL-DAELFSDYFG----GCPVITIPGRTFPVKEYFLEDIL--SKT-------------GYVS---EDDSARS-GP 378 (924)
T ss_pred EEeeeec-chHHHHHHhC----CCceEeecCCCcchHHHHHHHHH--HHh-------------cccc---ccccccc-cc
Confidence 9999998 8999999998 48899999999999887754220 000 0000 0000000 00
Q ss_pred ccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhC-CCCCeEEEecCHHHHHHHHHHhhhcCC
Q 001047 388 SRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR-DMLPAIWFIFNRRGCDAAVQYLEDCNL 466 (1174)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~IVF~~sr~~~~~la~~L~~~~~ 466 (1174)
... ..... . ... ...+ .....+.+++..+... ..+.+|||.++-.++..+...|.....
T Consensus 379 --~~~---~~~~~-~--~~~------~~~~------id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~ 438 (924)
T KOG0920|consen 379 --ERS---QLRLA-R--LKL------WEPE------IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLP 438 (924)
T ss_pred --ccC---ccccc-c--chh------cccc------ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccc
Confidence 000 00000 0 000 0000 1122334444444444 367899999999999999988874332
Q ss_pred CCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceE
Q 001047 467 LDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546 (1174)
Q Consensus 467 ~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~v 546 (1174)
..+ ..+.-|.++||.|+..+++.|+.....|..|||+||++++.+|.||++.+
T Consensus 439 f~~---------------------------~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvy 491 (924)
T KOG0920|consen 439 FAD---------------------------SLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVY 491 (924)
T ss_pred ccc---------------------------ccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEE
Confidence 111 01225889999999999999999999999999999999999999999999
Q ss_pred EEecccc----cCCC------CccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 547 VLSSLSK----RTAS------GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 547 VI~~~~k----~~~~------~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
||+++.- ||.. ...|.|.++..||.|||||. ..|.||-+++.
T Consensus 492 VIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv---~~G~cy~L~~~ 543 (924)
T KOG0920|consen 492 VIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV---RPGICYHLYTR 543 (924)
T ss_pred EEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc---cCCeeEEeech
Confidence 9998642 3322 24689999999999999999 69999977765
No 94
>PRK09694 helicase Cas3; Provisional
Probab=99.95 E-value=1.3e-25 Score=280.66 Aligned_cols=326 Identities=18% Similarity=0.165 Sum_probs=200.2
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHH----HhCCCe
Q 001047 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ--RRIFYTTPLKALSNQKFREFRE----TFGDNN 230 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g--~rvlvl~PtraLa~Q~~~~l~~----~~g~~~ 230 (1174)
.+.|+|+|+.+......+..++|.||||+|||.+++.++...+..+ .+++|..||++++||++.++.+ .|+...
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5689999998865544567899999999999999988877655544 5999999999999999999875 456567
Q ss_pred EEEEeCCCCCC-------------------------------C---CCcEEEEcHHHHHHHHhcccccccCCCCCCc---
Q 001047 231 VGLLTGDSAIN-------------------------------R---EAQILIMTTEILRNMLYQSVGMVSSESGLFD--- 273 (1174)
Q Consensus 231 v~lltGd~~~~-------------------------------~---~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~--- 273 (1174)
+.+.+|....+ + -++|+|+|+..++........ ..++.
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh-----~~lR~~~L 438 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH-----RFIRGFGL 438 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch-----HHHHHHhh
Confidence 88888765321 0 168999999888755544221 12222
Q ss_pred -eeEEEEccccccccCCcHHHHHHHHHHC-CCCccEEEEccccCCh--HHHHHHHhcccCceeeecCCCCccccEEeecc
Q 001047 274 -VDVIVLDEVHYLSDISRGTVWEEIIIYC-PKEVQIICLSATVANA--DELAGWIGQIHGKTELITSSRRPVPLTWYFST 349 (1174)
Q Consensus 274 -v~lVIiDEaH~l~d~~~g~~~e~ii~~l-~~~~qiI~LSATl~n~--~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~ 349 (1174)
-++|||||+|.+. ......+..++..+ .....+|+||||+|.. +.+.+-++ +..... .....|+......
T Consensus 439 a~svvIiDEVHAyD-~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~---~~~~~~--~~~~YPlvt~~~~ 512 (878)
T PRK09694 439 GRSVLIVDEVHAYD-AYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYG---GHDPVE--LSSAYPLITWRGV 512 (878)
T ss_pred ccCeEEEechhhCC-HHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhc---cccccc--ccccccccccccc
Confidence 3489999999983 34555666666554 3467899999999742 22222111 110000 0011121110000
Q ss_pred cccccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhH
Q 001047 350 KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 429 (1174)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 429 (1174)
........... .......... . +.. ..... ......+
T Consensus 513 -------------~~~~~~~~~~~----------~~~~~~~~~v-~---------v~~---~~~~~-------~~~~~~~ 549 (878)
T PRK09694 513 -------------NGAQRFDLSAH----------PEQLPARFTI-Q---------LEP---ICLAD-------MLPDLTL 549 (878)
T ss_pred -------------ccceeeecccc----------ccccCcceEE-E---------EEe---ecccc-------ccCHHHH
Confidence 00000000000 0000000000 0 000 00000 0000112
Q ss_pred HHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCC
Q 001047 430 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509 (1174)
Q Consensus 430 ~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl 509 (1174)
++.+.... ..+++++|||||++.|..+++.|+..+.. ...+..+||.+
T Consensus 550 l~~i~~~~-~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~-------------------------------~~~v~llHsrf 597 (878)
T PRK09694 550 LQRMIAAA-NAGAQVCLICNLVDDAQKLYQRLKELNNT-------------------------------QVDIDLFHARF 597 (878)
T ss_pred HHHHHHHH-hcCCEEEEEECCHHHHHHHHHHHHhhCCC-------------------------------CceEEEEeCCC
Confidence 22222211 24578999999999999999998743210 01588999999
Q ss_pred CHHHHH----HHHHHH-hcCC---ceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCC
Q 001047 510 LPIWKS----FIEELF-QRGL---VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 579 (1174)
Q Consensus 510 ~~~~R~----~v~~~F-~~G~---ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~ 579 (1174)
++.+|. .+++.| ++|. .+|||||+++++||||+ .+++|. ...| ...++||+||+||.|.
T Consensus 598 ~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlIt--------dlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 598 TLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLIT--------QLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEE--------CCCC--HHHHHHHHhccCCCCC
Confidence 999994 566677 6666 47999999999999995 688887 4444 6799999999999985
No 95
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=3.1e-26 Score=264.92 Aligned_cols=361 Identities=17% Similarity=0.118 Sum_probs=248.7
Q ss_pred ChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh------cCCeEEEEcccHHHHHHHHHH
Q 001047 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA------NQRRIFYTTPLKALSNQKFRE 221 (1174)
Q Consensus 148 ~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~------~g~rvlvl~PtraLa~Q~~~~ 221 (1174)
..+.-.....++.....++++++|..+..+||||.||||||+.....+.++-- .++.+-|+.|+|.-|.-++++
T Consensus 245 ~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkR 324 (1172)
T KOG0926|consen 245 PAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKR 324 (1172)
T ss_pred cHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHH
Confidence 33344444555555667789999999999999999999999987777766532 245788999999888877777
Q ss_pred HHHHhCC---CeEEEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHH
Q 001047 222 FRETFGD---NNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII 298 (1174)
Q Consensus 222 l~~~~g~---~~v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii 298 (1174)
....+|. .....+.-|.++++++.|.+||.|+|++-+.+ +..|..++.||+||||..+ -...++-.++
T Consensus 325 Va~EL~~~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~-------DflL~kYSvIIlDEAHERS--vnTDILiGmL 395 (1172)
T KOG0926|consen 325 VAFELGVLGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIEN-------DFLLTKYSVIILDEAHERS--VNTDILIGML 395 (1172)
T ss_pred HHHHhccCccceeEEEEeccccCCCceeEEecchHHHHHHHH-------hHhhhhceeEEechhhhcc--chHHHHHHHH
Confidence 7765543 34556788999999999999999999998875 6778999999999999865 2222222222
Q ss_pred HHC-------C------CCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccc
Q 001047 299 IYC-------P------KEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 365 (1174)
Q Consensus 299 ~~l-------~------~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~ 365 (1174)
.++ . ...++|.||||+ ...+|.+--....-+.+++..+.|..|+..||.....
T Consensus 396 SRiV~LR~k~~ke~~~~kpLKLIIMSATL-RVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~------------- 461 (1172)
T KOG0926|consen 396 SRIVPLRQKYYKEQCQIKPLKLIIMSATL-RVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTP------------- 461 (1172)
T ss_pred HHHHHHHHHHhhhhcccCceeEEEEeeeE-EecccccCceecCCCCceeeeecccCceEEEeccCCC-------------
Confidence 211 1 257899999999 5666654333334456688899999999999865331
Q ss_pred hhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHH-hCCCCCe
Q 001047 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR-SRDMLPA 444 (1174)
Q Consensus 366 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~ 444 (1174)
.+|+ ...+.-...++ ..+.+.+
T Consensus 462 ----~DYi-----------------------------------------------------~eAfrKtc~IH~kLP~G~I 484 (1172)
T KOG0926|consen 462 ----DDYI-----------------------------------------------------AEAFRKTCKIHKKLPPGGI 484 (1172)
T ss_pred ----chHH-----------------------------------------------------HHHHHHHHHHhhcCCCCcE
Confidence 1122 11111122222 3467889
Q ss_pred EEEecCHHHHHHHHHHhhhcC---CC----------CHHhHH---HH--------------H---HHHHHH---------
Q 001047 445 IWFIFNRRGCDAAVQYLEDCN---LL----------DECEMS---EV--------------E---LALKRF--------- 482 (1174)
Q Consensus 445 IVF~~sr~~~~~la~~L~~~~---~~----------~~~e~~---~i--------------~---~~~~~~--------- 482 (1174)
|||+....+++.+++.|++.- +- ..+.+. .+ . +-++..
T Consensus 485 LVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~ 564 (1172)
T KOG0926|consen 485 LVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASL 564 (1172)
T ss_pred EEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhh
Confidence 999999999999999998431 10 000000 00 0 000000
Q ss_pred ---HhhCCcc----------chh--hHHhhh--------ccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcC
Q 001047 483 ---RILYPDA----------VRE--PAIKGL--------LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 539 (1174)
Q Consensus 483 ---~~~~~~~----------~~~--~l~~~L--------~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GI 539 (1174)
....+|+ ... .+-..+ .--|.+++|-|+.+.+..|+..-..|..-++|||++++..+
T Consensus 565 raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSL 644 (1172)
T KOG0926|consen 565 RAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSL 644 (1172)
T ss_pred hhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccc
Confidence 0000110 000 000000 12377889999999999999999999999999999999999
Q ss_pred CcCCceEEEecccc----cCCC------CccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 540 NMPARTAVLSSLSK----RTAS------GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 540 DiP~v~vVI~~~~k----~~~~------~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
.||++.+||+.+.- ||.. .-.|+|.++.-||+|||||.| .||||-++++
T Consensus 645 TIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYRLYSS 703 (1172)
T KOG0926|consen 645 TIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYRLYSS 703 (1172)
T ss_pred ccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceeehhhh
Confidence 99999999997642 2221 125889999999999999997 9999988876
No 96
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.95 E-value=6.3e-26 Score=273.61 Aligned_cols=365 Identities=15% Similarity=0.128 Sum_probs=229.6
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCC-
Q 001047 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGD- 228 (1174)
Q Consensus 150 ~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~- 228 (1174)
+......+..|+++|..+...+..|+ |+.++||+|||++|.+|++.....|..+.|++||..||.|.++.+...+..
T Consensus 47 Ea~~R~lg~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 47 EASKRVLGMRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred HHHHHHhCCCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 44566677889999999988888776 999999999999999999655556888999999999999999999987653
Q ss_pred -CeEEEEeCCCCCC-----CCCcEEEEcHHHH-HHHHhcccccccCCCCCCceeEEEEcccccccc-CCcHHHH------
Q 001047 229 -NNVGLLTGDSAIN-----REAQILIMTTEIL-RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD-ISRGTVW------ 294 (1174)
Q Consensus 229 -~~v~lltGd~~~~-----~~~~IlV~Tpe~L-~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d-~~~g~~~------ 294 (1174)
+++++++|+.... -.++|+|+||+.| .++|............++++.++||||||.++- ..+.+.+
T Consensus 125 GLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~ 204 (745)
T TIGR00963 125 GLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAE 204 (745)
T ss_pred CCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCC
Confidence 6899999876532 2579999999999 777765322222234578899999999998862 2222211
Q ss_pred ---------HHHHHHCCC--------CccEEEEccc----------cCC---h--HHHHHHHhcc---------------
Q 001047 295 ---------EEIIIYCPK--------EVQIICLSAT----------VAN---A--DELAGWIGQI--------------- 327 (1174)
Q Consensus 295 ---------e~ii~~l~~--------~~qiI~LSAT----------l~n---~--~~~~~~l~~~--------------- 327 (1174)
..+...+.. .-+.+.||.- ++| . ..+..|+...
T Consensus 205 ~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV 284 (745)
T TIGR00963 205 KSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIV 284 (745)
T ss_pred CchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 112222211 1223334321 001 0 1122222210
Q ss_pred -cCceeeec-CCCCccc----------------------------------cEEeecccccccccccccccccc--hhhh
Q 001047 328 -HGKTELIT-SSRRPVP----------------------------------LTWYFSTKTALLPLLDEKGKHMN--RKLS 369 (1174)
Q Consensus 328 -~~~~~~i~-~~~rpvp----------------------------------l~~~~~~~~~~~~~~~~~~~~~~--~~l~ 369 (1174)
.+.+.++. ...|..| ....|..-.+ -.|+... ..+
T Consensus 285 ~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~G------mTGTa~te~~E~- 357 (745)
T TIGR00963 285 RDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSG------MTGTAKTEEEEF- 357 (745)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhc------cCCCcHHHHHHH-
Confidence 01111111 1111100 0111111001 1111111 111
Q ss_pred hhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEec
Q 001047 370 LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 449 (1174)
Q Consensus 370 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~ 449 (1174)
...........+..+.. .+ ... .+ .+..........+.+.+.... ..+.|+||||.
T Consensus 358 ~~iY~l~vv~IPtnkp~---~R---~d~----~d-------------~i~~t~~~k~~ai~~~i~~~~-~~grpvLV~t~ 413 (745)
T TIGR00963 358 EKIYNLEVVVVPTNRPV---IR---KDL----SD-------------LVYKTEEEKWKAVVDEIKERH-AKGQPVLVGTT 413 (745)
T ss_pred HHHhCCCEEEeCCCCCe---ee---eeC----CC-------------eEEcCHHHHHHHHHHHHHHHH-hcCCCEEEEeC
Confidence 11111111111111100 00 000 00 000000111223334343333 35689999999
Q ss_pred CHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEE
Q 001047 450 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVV 529 (1174)
Q Consensus 450 sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVL 529 (1174)
|...++.++..|...|+ ....+||. +.+|+..+..|..+...|+
T Consensus 414 si~~se~ls~~L~~~gi----------------------------------~~~~Lna~--q~~rEa~ii~~ag~~g~Vt 457 (745)
T TIGR00963 414 SVEKSELLSNLLKERGI----------------------------------PHNVLNAK--NHEREAEIIAQAGRKGAVT 457 (745)
T ss_pred cHHHHHHHHHHHHHcCC----------------------------------CeEEeeCC--hHHHHHHHHHhcCCCceEE
Confidence 99999999999987776 46778988 8899999999999999999
Q ss_pred EechhhhhcCCcCC-------ceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 530 FATETLAAGINMPA-------RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 530 VAT~tla~GIDiP~-------v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
|||++++||+||+. ..+||+ ++.|.|...|.|+.|||||.| ..|.+.++.+..+
T Consensus 458 IATnmAgRGtDI~l~~V~~~GGl~VI~--------t~~p~s~ri~~q~~GRtGRqG--~~G~s~~~ls~eD 518 (745)
T TIGR00963 458 IATNMAGRGTDIKLEEVKELGGLYVIG--------TERHESRRIDNQLRGRSGRQG--DPGSSRFFLSLED 518 (745)
T ss_pred EEeccccCCcCCCccchhhcCCcEEEe--------cCCCCcHHHHHHHhccccCCC--CCcceEEEEeccH
Confidence 99999999999999 559999 889999999999999999999 8999999988765
No 97
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=4.7e-26 Score=259.37 Aligned_cols=352 Identities=19% Similarity=0.218 Sum_probs=249.4
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHH-HhcCCeEEEEcccHHHHHHHHHHHHHHhC----CCeEE
Q 001047 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVAT-VANQRRIFYTTPLKALSNQKFREFRETFG----DNNVG 232 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~-l~~g~rvlvl~PtraLa~Q~~~~l~~~~g----~~~v~ 232 (1174)
++...++.+.+..|..++.++|.+.||||||+.....+++. ...++.+-++.|+|.-|..+++++.+.+| ....+
T Consensus 355 LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY 434 (1042)
T KOG0924|consen 355 LPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY 434 (1042)
T ss_pred cchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccce
Confidence 34566788888889999999999999999999876665543 23456888999999999999999988774 33223
Q ss_pred EEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc---cCCcHHHHHHHHHHCCCCccEEE
Q 001047 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS---DISRGTVWEEIIIYCPKEVQIIC 309 (1174)
Q Consensus 233 lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~---d~~~g~~~e~ii~~l~~~~qiI~ 309 (1174)
.+..+....+++.|-+||.|+|++.... ...|.++++||+||||..+ |.-||.. ..++. -..+.++|.
T Consensus 435 sIRFEdvT~~~T~IkymTDGiLLrEsL~-------d~~L~kYSviImDEAHERslNtDilfGll-k~~la-rRrdlKliV 505 (1042)
T KOG0924|consen 435 SIRFEDVTSEDTKIKYMTDGILLRESLK-------DRDLDKYSVIIMDEAHERSLNTDILFGLL-KKVLA-RRRDLKLIV 505 (1042)
T ss_pred EEEeeecCCCceeEEEeccchHHHHHhh-------hhhhhheeEEEechhhhcccchHHHHHHH-HHHHH-hhccceEEE
Confidence 3455555668899999999999887653 5678999999999999865 2233322 22222 245899999
Q ss_pred EccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCcc
Q 001047 310 LSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389 (1174)
Q Consensus 310 LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 389 (1174)
.|||+ |++.|++|++. |+.++.+.|..|+...+..... .+|+.
T Consensus 506 tSATm-~a~kf~nfFgn----~p~f~IpGRTyPV~~~~~k~p~-----------------eDYVe--------------- 548 (1042)
T KOG0924|consen 506 TSATM-DAQKFSNFFGN----CPQFTIPGRTYPVEIMYTKTPV-----------------EDYVE--------------- 548 (1042)
T ss_pred eeccc-cHHHHHHHhCC----CceeeecCCccceEEEeccCch-----------------HHHHH---------------
Confidence 99999 89999999984 8889999999998877643220 11110
Q ss_pred ccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHH-hCCCCCeEEEecCHHHHHHHHHHhhhcCCCC
Q 001047 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR-SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLD 468 (1174)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~ 468 (1174)
..+.-...+. ....+.++||...+...+..+..+..+
T Consensus 549 --------------------------------------aavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~---- 586 (1042)
T KOG0924|consen 549 --------------------------------------AAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEK---- 586 (1042)
T ss_pred --------------------------------------HHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHH----
Confidence 0000001111 123467999999887766655544311
Q ss_pred HHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEE
Q 001047 469 ECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548 (1174)
Q Consensus 469 ~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI 548 (1174)
+.++... +.-.-.|.++++.|+...+..|+..-..|..|+||||++++..+.+|.+.+||
T Consensus 587 ----------l~ql~~~----------~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVI 646 (1042)
T KOG0924|consen 587 ----------LEQLDSA----------PTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVI 646 (1042)
T ss_pred ----------HHhhhcC----------CCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEE
Confidence 0000000 00012588999999999999999999999999999999999999999999999
Q ss_pred eccc----ccCCC------CccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhhCCCcceeeeeccchh
Q 001047 549 SSLS----KRTAS------GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 618 (1174)
Q Consensus 549 ~~~~----k~~~~------~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~~~~~pl~S~f~~~y~ 618 (1174)
+.+- -|+.. ...|+|.+...||+|||||.| .|.||-+++.. .|.+-+...+.| +-+-.+..|
T Consensus 647 D~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~---pG~cYRlYTe~----ay~~eml~stvP-EIqRTNl~n 718 (1042)
T KOG0924|consen 647 DTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG---PGTCYRLYTED----AYKNEMLPSTVP-EIQRTNLSN 718 (1042)
T ss_pred ecCceeeeecccccccceeEEEechhccchhhccccCCCC---Ccceeeehhhh----HHHhhcccCCCc-hhhhcchhh
Confidence 8642 13222 247999999999999999997 99999888763 244434433333 334445567
Q ss_pred HHHHHhh
Q 001047 619 MVLNLLA 625 (1174)
Q Consensus 619 ~vlnll~ 625 (1174)
++|-|+.
T Consensus 719 vVLlLks 725 (1042)
T KOG0924|consen 719 VVLLLKS 725 (1042)
T ss_pred HHHHHHh
Confidence 7877765
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.94 E-value=9.9e-25 Score=232.82 Aligned_cols=308 Identities=20% Similarity=0.280 Sum_probs=220.4
Q ss_pred CCCHHHHHHHHHHH----cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEE
Q 001047 159 RIDKFQRSSIEAFL----RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLL 234 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll----~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ll 234 (1174)
++++.|+.+-..+. +.++.||.|-||+|||......|...+++|.++.+.+|+...+-+.+.+++..|.+..+.++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 58999998877655 55899999999999999888888889999999999999999999999999999998889999
Q ss_pred eCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHH-HHCCCCccEEEEccc
Q 001047 235 TGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII-IYCPKEVQIICLSAT 313 (1174)
Q Consensus 235 tGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii-~~l~~~~qiI~LSAT 313 (1174)
+|++...-.++++|+|+..|.+.- +.++++||||+|...-.. ...+...+ .......-+|.||||
T Consensus 177 yg~S~~~fr~plvVaTtHQLlrFk-------------~aFD~liIDEVDAFP~~~-d~~L~~Av~~ark~~g~~IylTAT 242 (441)
T COG4098 177 YGDSDSYFRAPLVVATTHQLLRFK-------------QAFDLLIIDEVDAFPFSD-DQSLQYAVKKARKKEGATIYLTAT 242 (441)
T ss_pred ecCCchhccccEEEEehHHHHHHH-------------hhccEEEEeccccccccC-CHHHHHHHHHhhcccCceEEEecC
Confidence 999987777999999999888642 368999999999764211 12222222 233445679999999
Q ss_pred cCChHHHHHHHhcccCceeeecCCC----CccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCcc
Q 001047 314 VANADELAGWIGQIHGKTELITSSR----RPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389 (1174)
Q Consensus 314 l~n~~~~~~~l~~~~~~~~~i~~~~----rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 389 (1174)
+++ ++..-+. ++....+.-.. .|.|+--++.... .+..
T Consensus 243 p~k--~l~r~~~--~g~~~~~klp~RfH~~pLpvPkf~w~~~------------~~k~---------------------- 284 (441)
T COG4098 243 PTK--KLERKIL--KGNLRILKLPARFHGKPLPVPKFVWIGN------------WNKK---------------------- 284 (441)
T ss_pred ChH--HHHHHhh--hCCeeEeecchhhcCCCCCCCceEEecc------------HHHH----------------------
Confidence 873 2222221 12222222111 1222211111000 0000
Q ss_pred ccccccccCCCCCcccccccccccchhhhhhhhhcCc-hhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhh-hcCCC
Q 001047 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV-PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLE-DCNLL 467 (1174)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~-~~~~~ 467 (1174)
+.+... +.+..++..-. ..+.|++||+++....+.++..|+ ....
T Consensus 285 -------------------------------l~r~kl~~kl~~~lekq~-~~~~P~liF~p~I~~~eq~a~~lk~~~~~- 331 (441)
T COG4098 285 -------------------------------LQRNKLPLKLKRWLEKQR-KTGRPVLIFFPEIETMEQVAAALKKKLPK- 331 (441)
T ss_pred -------------------------------hhhccCCHHHHHHHHHHH-hcCCcEEEEecchHHHHHHHHHHHhhCCc-
Confidence 111112 23344444332 355799999999999999998884 2221
Q ss_pred CHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEE
Q 001047 468 DECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAV 547 (1174)
Q Consensus 468 ~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vV 547 (1174)
..++..||. ...|.+..+.|++|++++||+|.++++|+.+|.+.|+
T Consensus 332 --------------------------------~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~ 377 (441)
T COG4098 332 --------------------------------ETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVF 377 (441)
T ss_pred --------------------------------cceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEE
Confidence 146777763 4578888889999999999999999999999999998
Q ss_pred EecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 548 LSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 548 I~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
+.+ ..+.-.|.+..+|++||+||.-.-..|.+++|-..
T Consensus 378 Vlg------aeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G 415 (441)
T COG4098 378 VLG------AEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYG 415 (441)
T ss_pred Eec------CCcccccHHHHHHHhhhccCCCcCCCCcEEEEecc
Confidence 873 25566789999999999999865577888877643
No 99
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=1.1e-25 Score=270.49 Aligned_cols=313 Identities=21% Similarity=0.228 Sum_probs=194.8
Q ss_pred EEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------CCCCcE
Q 001047 178 VVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-----------NREAQI 246 (1174)
Q Consensus 178 lv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-----------~~~~~I 246 (1174)
++.||||||||.+|+.++...+..|+++||++|+++|+.|+++.|++.||. .+.+++|+.+. +..++|
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~-~v~vlhs~~~~~er~~~~~~~~~g~~~I 79 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGS-QVAVLHSGLSDSEKLQAWRKVKNGEILV 79 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCC-cEEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 478999999999999888888888999999999999999999999999874 47788887642 246899
Q ss_pred EEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCc-HH--HHHHH--HHHCCCCccEEEEccccCChHHHH
Q 001047 247 LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISR-GT--VWEEI--IIYCPKEVQIICLSATVANADELA 321 (1174)
Q Consensus 247 lV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~-g~--~~e~i--i~~l~~~~qiI~LSATl~n~~~~~ 321 (1174)
+|+|+..+.. .+.++++|||||+|..+..+. ++ ....+ +.....+.++|++|||++ .+.+.
T Consensus 80 VVGTrsalf~-------------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs-les~~ 145 (505)
T TIGR00595 80 VIGTRSALFL-------------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS-LESYH 145 (505)
T ss_pred EECChHHHcC-------------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC-HHHHH
Confidence 9999986531 367899999999998763321 11 11111 222235789999999965 44333
Q ss_pred HHHhcccCceeeecCCCCc----cccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCcccccccccc
Q 001047 322 GWIGQIHGKTELITSSRRP----VPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHA 397 (1174)
Q Consensus 322 ~~l~~~~~~~~~i~~~~rp----vpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1174)
.. ..+....+....|+ .|....+ +-.. ..
T Consensus 146 ~~---~~g~~~~~~l~~r~~~~~~p~v~vi----------d~~~-----~~----------------------------- 178 (505)
T TIGR00595 146 NA---KQKAYRLLVLTRRVSGRKPPEVKLI----------DMRK-----EP----------------------------- 178 (505)
T ss_pred HH---hcCCeEEeechhhhcCCCCCeEEEE----------eccc-----cc-----------------------------
Confidence 32 23333333222221 1111000 0000 00
Q ss_pred CCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHH---
Q 001047 398 DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE--- 474 (1174)
Q Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~--- 474 (1174)
. .....+.+++.+..... .+.++|||+|++..+-.+ .+..||....|..+.
T Consensus 179 -~----------------------~~~ls~~l~~~i~~~l~-~g~qvLvflnrrGya~~~--~C~~Cg~~~~C~~C~~~l 232 (505)
T TIGR00595 179 -R----------------------QSFLSPELITAIEQTLA-AGEQSILFLNRRGYSKNL--LCRSCGYILCCPNCDVSL 232 (505)
T ss_pred -c----------------------cCCccHHHHHHHHHHHH-cCCcEEEEEeCCcCCCee--EhhhCcCccCCCCCCCce
Confidence 0 00001223334443333 346899999987653211 122233322222111
Q ss_pred --------------------------------------HHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHH--
Q 001047 475 --------------------------------------VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWK-- 514 (1174)
Q Consensus 475 --------------------------------------i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R-- 514 (1174)
++...+.+...+|+ ..|...|+.++...+
T Consensus 233 ~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~-----------~~v~~~d~d~~~~~~~~ 301 (505)
T TIGR00595 233 TYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPG-----------ARIARIDSDTTSRKGAH 301 (505)
T ss_pred EEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCC-----------CcEEEEecccccCccHH
Confidence 12222222222332 368899999987766
Q ss_pred HHHHHHHhcCCceEEEechhhhhcCCcCCceEEE--eccccc-CCCCc-cccCHHHHHHhhcccCCCCCCCccEEEEEeC
Q 001047 515 SFIEELFQRGLVKVVFATETLAAGINMPARTAVL--SSLSKR-TASGR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 590 (1174)
Q Consensus 515 ~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI--~~~~k~-~~~~~-~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~ 590 (1174)
+.+++.|++|+++|||+|+++++|+|+|++++|+ +.+... ...++ .......|+|++|||||.+ ..|.+++...
T Consensus 302 ~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~--~~g~viiqt~ 379 (505)
T TIGR00595 302 EALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAE--DPGQVIIQTY 379 (505)
T ss_pred HHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCC--CCCEEEEEeC
Confidence 8999999999999999999999999999999774 321100 00000 1123567999999999987 6888886553
Q ss_pred C
Q 001047 591 P 591 (1174)
Q Consensus 591 ~ 591 (1174)
.
T Consensus 380 ~ 380 (505)
T TIGR00595 380 N 380 (505)
T ss_pred C
Confidence 3
No 100
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.93 E-value=8.8e-24 Score=265.71 Aligned_cols=376 Identities=16% Similarity=0.124 Sum_probs=216.1
Q ss_pred CCCCHHHHHHHHHHHcC--CcEEEEccCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHHHhCCCeEEE
Q 001047 158 FRIDKFQRSSIEAFLRG--SSVVVSAPTSSGKTLIAEAAAVATVANQ--RRIFYTTPLKALSNQKFREFRETFGDNNVGL 233 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g--~~vlv~apTGsGKTlv~~~~il~~l~~g--~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~l 233 (1174)
..|.|+|..++..++.. ..+|+...+|.|||+.+.+.+...+..| +++||+||. .|..||..++.+.|+ ..+.+
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~-l~~~i 228 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFN-LRFSL 228 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhC-CCeEE
Confidence 46999999998877643 4799999999999999988777666555 599999997 899999999998887 34555
Q ss_pred EeCCCC---------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccC--CcHHHHHHHHHHCC
Q 001047 234 LTGDSA---------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI--SRGTVWEEIIIYCP 302 (1174)
Q Consensus 234 ltGd~~---------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~--~~g~~~e~ii~~l~ 302 (1174)
+.++.. .....+++|+|.+.+...-... ....-..+++||+||||++... .....+..+.....
T Consensus 229 ~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~-----~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~ 303 (956)
T PRK04914 229 FDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRL-----EQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAE 303 (956)
T ss_pred EcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHH-----HHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhh
Confidence 554321 1125789999999877521000 0011237899999999999621 11122332222222
Q ss_pred CCccEEEEccccCC--hHHHHHHHhcccCcee----eec---CCCCcccc--EEeecccc-------ccccccc------
Q 001047 303 KEVQIICLSATVAN--ADELAGWIGQIHGKTE----LIT---SSRRPVPL--TWYFSTKT-------ALLPLLD------ 358 (1174)
Q Consensus 303 ~~~qiI~LSATl~n--~~~~~~~l~~~~~~~~----~i~---~~~rpvpl--~~~~~~~~-------~~~~~~~------ 358 (1174)
....+++|||||-. ..++-..+........ .+. ..++|+.- ........ .+..++.
T Consensus 304 ~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~ 383 (956)
T PRK04914 304 VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEP 383 (956)
T ss_pred ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhH
Confidence 34568999999963 4544444443322110 000 00111000 00000000 0000000
Q ss_pred ------ccccc---cchhhhhhhhhcccccCCCccCCCccccccccccCCCCCccccccccccc----------------
Q 001047 359 ------EKGKH---MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQL---------------- 413 (1174)
Q Consensus 359 ------~~~~~---~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------------- 413 (1174)
..... ....+ +..+. ..+.......++.+.....-+...... ....+
T Consensus 384 l~~~~~~~~~~~~~~~~~~-i~~L~------d~hg~~rvm~RntR~~v~~fp~R~~~~-~~l~~~~~y~~~~~~~~~~~~ 455 (956)
T PRK04914 384 LLQAANSDSEEAQAARQEL-ISELL------DRHGTGRVLFRNTRAAVKGFPKRELHP-IPLPLPEQYQTAIKVSLEARA 455 (956)
T ss_pred HHhhhcccccccHHHHHHH-HHHHH------hhcCcceEEEeccHHhhcCCCcCceeE-eecCCCHHHHHHHHHhHHHHH
Confidence 00000 00000 00000 000000000001000000000000000 00000
Q ss_pred ----chhhhh-hh----hhcCchhHHHHHHHHH-hCCCCCeEEEecCHHHHHHHHHHhh-hcCCCCHHhHHHHHHHHHHH
Q 001047 414 ----SKNSIN-AI----RRSQVPQVIDTLWHLR-SRDMLPAIWFIFNRRGCDAAVQYLE-DCNLLDECEMSEVELALKRF 482 (1174)
Q Consensus 414 ----~~~~~~-~~----~~~~~~~~~~~l~~l~-~~~~~~~IVF~~sr~~~~~la~~L~-~~~~~~~~e~~~i~~~~~~~ 482 (1174)
....+. .. ........++.+..+. .....++||||.++..|..+++.|. ..|+
T Consensus 456 ~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi---------------- 519 (956)
T PRK04914 456 RDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGI---------------- 519 (956)
T ss_pred HhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCe----------------
Confidence 000000 00 0011122344444443 3346799999999999999999995 4454
Q ss_pred HhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhc--CCceEEEechhhhhcCCcCCceEEEecccccCCCCcc
Q 001047 483 RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR--GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 560 (1174)
Q Consensus 483 ~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~--G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~ 560 (1174)
.+..+||+|++.+|+.+.+.|++ |..+|||||+++++|+|++.+++||+ ++.
T Consensus 520 ------------------~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn--------fDl 573 (956)
T PRK04914 520 ------------------RAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL--------FDL 573 (956)
T ss_pred ------------------eEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEE--------ecC
Confidence 57789999999999999999998 46999999999999999999999999 999
Q ss_pred ccCHHHHHHhhcccCCCCCCCccEEEEEeC
Q 001047 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQT 590 (1174)
Q Consensus 561 p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~ 590 (1174)
|.++..|.||+||+||.|+.....+++++.
T Consensus 574 P~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~ 603 (956)
T PRK04914 574 PFNPDLLEQRIGRLDRIGQKHDIQIHVPYL 603 (956)
T ss_pred CCCHHHHHHHhcccccCCCCceEEEEEccC
Confidence 999999999999999999654433334333
No 101
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.90 E-value=1.3e-23 Score=228.67 Aligned_cols=305 Identities=15% Similarity=0.139 Sum_probs=186.4
Q ss_pred EEEEcccHHHHHHHHHHHHH---HhCCC--eEEEEeCCCC-------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCC
Q 001047 205 IFYTTPLKALSNQKFREFRE---TFGDN--NVGLLTGDSA-------INREAQILIMTTEILRNMLYQSVGMVSSESGLF 272 (1174)
Q Consensus 205 vlvl~PtraLa~Q~~~~l~~---~~g~~--~v~lltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~ 272 (1174)
++|+-|.++|+.|.+..+.+ ...+- +--++.|+.. ...+.+|+|+||++|..++.. +...+.
T Consensus 289 avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~------g~~~lt 362 (725)
T KOG0349|consen 289 AVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK------GLVTLT 362 (725)
T ss_pred eeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc------cceeee
Confidence 78999999999999985554 32221 2224444332 235789999999999999976 456788
Q ss_pred ceeEEEEccccccccCCcHHHHHHHHHHCC------CCccEEEEccccCC--hHHHHHHHhcccCceeeecCCCCccccE
Q 001047 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCP------KEVQIICLSATVAN--ADELAGWIGQIHGKTELITSSRRPVPLT 344 (1174)
Q Consensus 273 ~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~------~~~qiI~LSATl~n--~~~~~~~l~~~~~~~~~i~~~~rpvpl~ 344 (1174)
++.++|+||++.++...+...+..+...+| ...|.+..|||+.- ...+++-+-....-+.+-..+.-|-.+.
T Consensus 363 ~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvH 442 (725)
T KOG0349|consen 363 HCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVH 442 (725)
T ss_pred eeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhc
Confidence 999999999999987677666666655443 35889999999852 1222222211100000111111111111
Q ss_pred EeecccccccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhc
Q 001047 345 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS 424 (1174)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 424 (1174)
+.+. ++.......-..+ ..++.......+.+ .............. .++..
T Consensus 443 hvv~-------lv~p~~d~sw~~l-r~~i~td~vh~kdn--------------------~~pg~~Spe~~s~a-~kilk- 492 (725)
T KOG0349|consen 443 HVVK-------LVCPSVDGSWCDL-RQFIETDKVHTKDN--------------------LLPGQVSPENPSSA-TKILK- 492 (725)
T ss_pred ccee-------ecCCccCccHHHH-hhhhccCCcccccc--------------------cccccCCCCChhhh-hHHhc-
Confidence 1000 0000000000000 00110000000000 00000000000000 00000
Q ss_pred CchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeE
Q 001047 425 QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAA 504 (1174)
Q Consensus 425 ~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~ 504 (1174)
- ...+..+.+..+.++||||.++..|+.+-.++...|- -...+..
T Consensus 493 -g---Ey~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg-------------------------------~~~scvc 537 (725)
T KOG0349|consen 493 -G---EYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGG-------------------------------KHYSCVC 537 (725)
T ss_pred -C---chhhhhhhhhccCceEEEEeccccchHHHHHHHHcCC-------------------------------ccceeEE
Confidence 0 1122334455778999999999999999999875442 0125778
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccE
Q 001047 505 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 584 (1174)
Q Consensus 505 ~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~ 584 (1174)
+|+...|.+|..-++.|+.+.++.||||+++++|+||..+-++|+ ...|-....|+||+||.||+- ..|.
T Consensus 538 lhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~in--------vtlpd~k~nyvhrigrvgrae--rmgl 607 (725)
T KOG0349|consen 538 LHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMIN--------VTLPDDKTNYVHRIGRVGRAE--RMGL 607 (725)
T ss_pred EecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEE--------EecCcccchhhhhhhccchhh--hcce
Confidence 999999999999999999999999999999999999999999999 677888899999999999986 7899
Q ss_pred EEEEeC
Q 001047 585 VVLVQT 590 (1174)
Q Consensus 585 ~ill~~ 590 (1174)
+|.++.
T Consensus 608 aislva 613 (725)
T KOG0349|consen 608 AISLVA 613 (725)
T ss_pred eEEEee
Confidence 985543
No 102
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.90 E-value=1.9e-22 Score=259.40 Aligned_cols=350 Identities=18% Similarity=0.187 Sum_probs=200.5
Q ss_pred CCCCHHHHHHHHHHH----cC-CcEEEEccCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHHhCC-C
Q 001047 158 FRIDKFQRSSIEAFL----RG-SSVVVSAPTSSGKTLIAEAAAVATVAN--QRRIFYTTPLKALSNQKFREFRETFGD-N 229 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll----~g-~~vlv~apTGsGKTlv~~~~il~~l~~--g~rvlvl~PtraLa~Q~~~~l~~~~g~-~ 229 (1174)
+.++++|.+||..+. +| +.+++++|||||||.++...+...+.. .+++||++|+++|+.|....|...... .
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 568999999998765 33 689999999999999877666555443 469999999999999999999884211 1
Q ss_pred -eEE-E--Ee--CCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccccc--C-------------
Q 001047 230 -NVG-L--LT--GDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD--I------------- 288 (1174)
Q Consensus 230 -~v~-l--lt--Gd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d--~------------- 288 (1174)
.+. + +. ++.....+..|+|+|.+.+.+.+...... .....+..+++||+||||+-.. .
T Consensus 492 ~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~-~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~ 570 (1123)
T PRK11448 492 QTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDP-MDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQL 570 (1123)
T ss_pred cchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccc-cccCCCCcccEEEEECCCCCCccccccccchhccchhh
Confidence 111 1 11 12223456899999999988765432110 0113567899999999998521 0
Q ss_pred CcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeec-----CCCCcc----ccEEeecccccccccccc
Q 001047 289 SRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELIT-----SSRRPV----PLTWYFSTKTALLPLLDE 359 (1174)
Q Consensus 289 ~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~-----~~~rpv----pl~~~~~~~~~~~~~~~~ 359 (1174)
.+...|..++.++. ..+|||||||.. ...++++. ++..+. .+.--+ |..+.. .+..
T Consensus 571 ~~~~~yr~iL~yFd--A~~IGLTATP~r--~t~~~FG~---pv~~Ysl~eAI~DG~Lv~~~~p~~i~t--------~~~~ 635 (1123)
T PRK11448 571 DYVSKYRRVLDYFD--AVKIGLTATPAL--HTTEIFGE---PVYTYSYREAVIDGYLIDHEPPIRIET--------RLSQ 635 (1123)
T ss_pred hHHHHHHHHHhhcC--ccEEEEecCCcc--chhHHhCC---eeEEeeHHHHHhcCCcccCcCCEEEEE--------Eecc
Confidence 11356778887663 568999999852 22233331 111000 000001 111100 0000
Q ss_pred cccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHH-HHHh
Q 001047 360 KGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW-HLRS 438 (1174)
Q Consensus 360 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~-~l~~ 438 (1174)
.+......-.. ..|.... ... . ..... .. ..+....+.+.. +.......+...+. .+..
T Consensus 636 ~gi~~~~~e~~----------~~~~~~~---~~i-~-~~~l~-d~-~~~~~~~~~~~v---i~~~~~~~i~~~l~~~l~~ 695 (1123)
T PRK11448 636 EGIHFEKGEEV----------EVINTQT---GEI-D-LATLE-DE-VDFEVEDFNRRV---ITESFNRVVCEELAKYLDP 695 (1123)
T ss_pred ccccccccchh----------hhcchhh---hhh-h-hccCc-HH-HhhhHHHHHHHH---hhHHHHHHHHHHHHHHHhc
Confidence 00000000000 0000000 000 0 00000 00 000000000000 00011112222222 2222
Q ss_pred CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHH
Q 001047 439 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 518 (1174)
Q Consensus 439 ~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~ 518 (1174)
...+++||||.++.+|+.+++.|.... ...++.. -...+..+||+.. .+..++
T Consensus 696 ~~~~KtiIF~~s~~HA~~i~~~L~~~f-----------------~~~~~~~--------~~~~v~~itg~~~--~~~~li 748 (1123)
T PRK11448 696 TGEGKTLIFAATDAHADMVVRLLKEAF-----------------KKKYGQV--------EDDAVIKITGSID--KPDQLI 748 (1123)
T ss_pred cCCCcEEEEEcCHHHHHHHHHHHHHHH-----------------HhhcCCc--------CccceEEEeCCcc--chHHHH
Confidence 345799999999999999988876320 0000000 0013556788775 567899
Q ss_pred HHHhcCCc-eEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCC
Q 001047 519 ELFQRGLV-KVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578 (1174)
Q Consensus 519 ~~F~~G~i-kVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G 578 (1174)
+.|+++.. +|+|+++++.+|+|+|.+.+||. .+.+.|...|+||+||+.|..
T Consensus 749 ~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf--------~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 749 RRFKNERLPNIVVTVDLLTTGIDVPSICNLVF--------LRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred HHHhCCCCCeEEEEecccccCCCcccccEEEE--------ecCCCCHHHHHHHHhhhccCC
Confidence 99999887 79999999999999999999998 788899999999999999975
No 103
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.89 E-value=5.4e-23 Score=247.99 Aligned_cols=372 Identities=22% Similarity=0.335 Sum_probs=280.6
Q ss_pred cCCcCChHHHhhcCCCCCCHHHHHHHHHHHc-CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHH
Q 001047 143 GNEMIDVDELASIYDFRIDKFQRSSIEAFLR-GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFRE 221 (1174)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~-g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~ 221 (1174)
+.+......+..+|... .|+|.++++.+.+ +++++|.+|+|||||.++.++++. -..-.+++|+.|.-+.+..+++.
T Consensus 1128 ~~~~l~N~~~~~lf~~~-n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-~~~~~~~vyi~p~~~i~~~~~~~ 1205 (1674)
T KOG0951|consen 1128 PVSALRNPSFETLFQDF-NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-PDTIGRAVYIAPLEEIADEQYRD 1205 (1674)
T ss_pred chhccCCcchhhhcccc-CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-CccceEEEEecchHHHHHHHHHH
Confidence 33444445566666644 8999999998775 468999999999999999999887 22345999999999999999999
Q ss_pred HHHHhCC---CeEEEEeCCCCCC----CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHH
Q 001047 222 FRETFGD---NNVGLLTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVW 294 (1174)
Q Consensus 222 l~~~~g~---~~v~lltGd~~~~----~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~ 294 (1174)
+.+.|+. ..+..++|+.+.+ ...+|+|+||+.+..+ . ..+.+++.|.||.|.+++ ..|+++
T Consensus 1206 w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~vii~tpe~~d~l-q----------~iQ~v~l~i~d~lh~igg-~~g~v~ 1273 (1674)
T KOG0951|consen 1206 WEKKFSKLLGLRIVKLTGETSLDLKLLQKGQVIISTPEQWDLL-Q----------SIQQVDLFIVDELHLIGG-VYGAVY 1273 (1674)
T ss_pred HHHhhccccCceEEecCCccccchHHhhhcceEEechhHHHHH-h----------hhhhcceEeeehhhhhcc-cCCceE
Confidence 9988764 4667788988766 5789999999998764 1 357899999999999984 566555
Q ss_pred HH------HHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhh
Q 001047 295 EE------IIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKL 368 (1174)
Q Consensus 295 e~------ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l 368 (1174)
+- +...+.++++++++|-.+.|+.++ ++.....+..+..+.||+|+..++......+ ....
T Consensus 1274 evi~S~r~ia~q~~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~----------~~~~ 1340 (1674)
T KOG0951|consen 1274 EVICSMRYIASQLEKKIRVVALSSSLANARDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISH----------FESR 1340 (1674)
T ss_pred EEEeeHHHHHHHHHhheeEEEeehhhccchhh---ccccccceeecCcccCCCceeEEEEEeccch----------hHHH
Confidence 43 334566789999999999999988 6655566788889999999998875422100 0000
Q ss_pred hhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEe
Q 001047 369 SLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 448 (1174)
Q Consensus 369 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~ 448 (1174)
.+.+ .......+.... .++.|+|||+
T Consensus 1341 ~~am-----------------------------------------------------~~~~~~ai~~~a-~~~k~~~vf~ 1366 (1674)
T KOG0951|consen 1341 MLAM-----------------------------------------------------TKPTYTAIVRHA-GNRKPAIVFL 1366 (1674)
T ss_pred HHHh-----------------------------------------------------hhhHHHHHHHHh-cCCCCeEEEe
Confidence 0000 111122222222 3567999999
Q ss_pred cCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceE
Q 001047 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKV 528 (1174)
Q Consensus 449 ~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikV 528 (1174)
++++.|..++..+-.....+... +.-...+..+..+...|..||+ |-||++.+...+-.+|..|.|+|
T Consensus 1367 p~rk~~~~~a~~~~~~s~~~~~~----------~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v 1434 (1674)
T KOG0951|consen 1367 PTRKHARLVAVDLVTFSHADEPD----------YLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQV 1434 (1674)
T ss_pred ccchhhhhhhhccchhhccCcHH----------HHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEE
Confidence 99999998887665433322110 0011111234466778889999 99999999999999999999999
Q ss_pred EEechhhhhcCCcCCceEEEecccccCCCCc--cccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhhCCC
Q 001047 529 VFATETLAAGINMPARTAVLSSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606 (1174)
Q Consensus 529 LVAT~tla~GIDiP~v~vVI~~~~k~~~~~~--~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~~~~ 606 (1174)
+|...- .+|+-+.+--||+.++..|||..+ .+++.++..||.|+|.|+ |.|++++... .++|++.+..++
T Consensus 1435 ~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~-----~k~vi~~~~~--~k~yykkfl~e~ 1506 (1674)
T KOG0951|consen 1435 CVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA-----GKCVIMCHTP--KKEYYKKFLYEP 1506 (1674)
T ss_pred EEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcCC-----ccEEEEecCc--hHHHHHHhccCc
Confidence 999988 999999999999999999999764 578999999999999995 5788888664 467999999999
Q ss_pred cceeeeecc
Q 001047 607 EPLVSQFTA 615 (1174)
Q Consensus 607 ~pl~S~f~~ 615 (1174)
.|.+|.+.-
T Consensus 1507 lPves~lq~ 1515 (1674)
T KOG0951|consen 1507 LPVESHLQH 1515 (1674)
T ss_pred CchHHHHHH
Confidence 999998643
No 104
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.88 E-value=6.6e-22 Score=212.39 Aligned_cols=170 Identities=24% Similarity=0.258 Sum_probs=143.5
Q ss_pred hccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc-----CCeEEEEcccHHHH
Q 001047 141 EFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN-----QRRIFYTTPLKALS 215 (1174)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~-----g~rvlvl~PtraLa 215 (1174)
++++++.....+.+.....|+++|.++++.+.+|+++++++|||+|||++|.++++..+.. +.+++|++|+++|+
T Consensus 3 ~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~ 82 (203)
T cd00268 3 ELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELA 82 (203)
T ss_pred cCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHH
Confidence 3445555556666655556999999999999999999999999999999999999887764 45899999999999
Q ss_pred HHHHHHHHHHhC--CCeEEEEeCCCCCC-------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 216 NQKFREFRETFG--DNNVGLLTGDSAIN-------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 216 ~Q~~~~l~~~~g--~~~v~lltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
.|+...+..... +..+..++|+.... .+++|+|+||+.|..++.+. ...+.+++++|+||+|.+.
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~------~~~~~~l~~lIvDE~h~~~ 156 (203)
T cd00268 83 LQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERG------KLDLSKVKYLVLDEADRML 156 (203)
T ss_pred HHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC------CCChhhCCEEEEeChHHhh
Confidence 999999888543 45678888876532 37899999999999988763 3567889999999999999
Q ss_pred cCCcHHHHHHHHHHCCCCccEEEEccccCC
Q 001047 287 DISRGTVWEEIIIYCPKEVQIICLSATVAN 316 (1174)
Q Consensus 287 d~~~g~~~e~ii~~l~~~~qiI~LSATl~n 316 (1174)
+..++..+..++..++.+.|++++|||+++
T Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 157 DMGFEDQIREILKLLPKDRQTLLFSATMPK 186 (203)
T ss_pred ccChHHHHHHHHHhCCcccEEEEEeccCCH
Confidence 888999999999999989999999999984
No 105
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=8.4e-21 Score=232.25 Aligned_cols=133 Identities=17% Similarity=0.178 Sum_probs=102.8
Q ss_pred HhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC--CC
Q 001047 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG--DN 229 (1174)
Q Consensus 152 l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g--~~ 229 (1174)
-....+..+.++|.-.--.+..| -|+.++||+|||++|.+|++..+..|..++|++||+.||.|.++.+...+. ++
T Consensus 75 ~~R~lg~~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGL 152 (896)
T PRK13104 75 SLRTLGLRHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGL 152 (896)
T ss_pred HHHHcCCCcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 34455667777886655555555 488999999999999999998777888999999999999999999988654 36
Q ss_pred eEEEEeCCCCCC-----CCCcEEEEcHHHH-HHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 230 NVGLLTGDSAIN-----REAQILIMTTEIL-RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 230 ~v~lltGd~~~~-----~~~~IlV~Tpe~L-~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
++++++|+.... -.++|+|+||+.| .++|......-........+.++||||||.|+
T Consensus 153 tv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred eEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 899999986533 2689999999999 88886532111111223689999999999885
No 106
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.87 E-value=2.1e-21 Score=201.90 Aligned_cols=149 Identities=35% Similarity=0.530 Sum_probs=129.2
Q ss_pred CHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCC--eEEEEcccHHHHHHHHHHHHHHhCC--CeEEEEeC
Q 001047 161 DKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR--RIFYTTPLKALSNQKFREFRETFGD--NNVGLLTG 236 (1174)
Q Consensus 161 ~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~--rvlvl~PtraLa~Q~~~~l~~~~g~--~~v~lltG 236 (1174)
||+|.++++.+.+|+++++.||||+|||+++.++++..+.++. +++|++|+++|++|++.++...++. .++..++|
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999999999999887655 9999999999999999999998765 57888888
Q ss_pred CCCCC--------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCC--CCcc
Q 001047 237 DSAIN--------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP--KEVQ 306 (1174)
Q Consensus 237 d~~~~--------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~--~~~q 306 (1174)
+.... .+++|+|+||+.|.+++... ...+.++++|||||+|.+.+..++..+..++..+. ++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~------~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQLLDLISNG------KINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTT------SSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccccccccccccCcchhhcccccc------ccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 77532 47999999999999988762 22456699999999999998888888888888763 3689
Q ss_pred EEEEccccC
Q 001047 307 IICLSATVA 315 (1174)
Q Consensus 307 iI~LSATl~ 315 (1174)
+++||||++
T Consensus 155 ~i~~SAT~~ 163 (169)
T PF00270_consen 155 IILLSATLP 163 (169)
T ss_dssp EEEEESSST
T ss_pred EEEEeeCCC
Confidence 999999996
No 107
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=4.8e-21 Score=212.10 Aligned_cols=340 Identities=16% Similarity=0.147 Sum_probs=241.7
Q ss_pred HHHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHH
Q 001047 136 CNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKAL 214 (1174)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraL 214 (1174)
.+.|...+.++...+.+++.-..+.+..+.+-+..+.+++-+++++.||||||+.....++... .....|.++.|.|.-
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrva 103 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVA 103 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHH
Confidence 5677778888888899999999999999999999999999999999999999988766665443 345779999999999
Q ss_pred HHHHHHHHHHHh----CCCeEEEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccccc--C
Q 001047 215 SNQKFREFRETF----GDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD--I 288 (1174)
Q Consensus 215 a~Q~~~~l~~~~----g~~~v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d--~ 288 (1174)
+.+++.+..+.+ |......+..+....+++-+-+||.++|.+.... ...+..+++||+||||...= .
T Consensus 104 amsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams-------~p~l~~y~viiLDeahERtlATD 176 (699)
T KOG0925|consen 104 AMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMS-------DPLLGRYGVIILDEAHERTLATD 176 (699)
T ss_pred HHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhh-------CcccccccEEEechhhhhhHHHH
Confidence 999988888754 3221112333444445666778999988876654 56788999999999998541 1
Q ss_pred CcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhh
Q 001047 289 SRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKL 368 (1174)
Q Consensus 289 ~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l 368 (1174)
..--.+.+++... ++.++|.||||+ .+..|..|++. +.++.... ..|++.+|.... .
T Consensus 177 iLmGllk~v~~~r-pdLk~vvmSatl-~a~Kfq~yf~n----~Pll~vpg-~~PvEi~Yt~e~-------------e--- 233 (699)
T KOG0925|consen 177 ILMGLLKEVVRNR-PDLKLVVMSATL-DAEKFQRYFGN----APLLAVPG-THPVEIFYTPEP-------------E--- 233 (699)
T ss_pred HHHHHHHHHHhhC-CCceEEEeeccc-chHHHHHHhCC----CCeeecCC-CCceEEEecCCC-------------C---
Confidence 1112333444444 589999999998 78889998874 66666665 566665543211 0
Q ss_pred hhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHh-CCCCCeEEE
Q 001047 369 SLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS-RDMLPAIWF 447 (1174)
Q Consensus 369 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~IVF 447 (1174)
. +..+..+.++.+++. ...+-++||
T Consensus 234 -r-----------------------------------------------------DylEaairtV~qih~~ee~GDilvF 259 (699)
T KOG0925|consen 234 -R-----------------------------------------------------DYLEAAIRTVLQIHMCEEPGDILVF 259 (699)
T ss_pred -h-----------------------------------------------------hHHHHHHHHHHHHHhccCCCCEEEE
Confidence 0 112334445555543 456889999
Q ss_pred ecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhc----
Q 001047 448 IFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR---- 523 (1174)
Q Consensus 448 ~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~---- 523 (1174)
..+..+.+.+++.+...+ +.+. + ....-.|.++| |.+++.|++....
T Consensus 260 LtgeeeIe~aC~~i~re~--------------~~L~---~--------~~g~l~v~PLy----P~~qq~iFep~p~~~~~ 310 (699)
T KOG0925|consen 260 LTGEEEIEDACRKISREV--------------DNLG---P--------QVGPLKVVPLY----PAQQQRIFEPAPEKRNG 310 (699)
T ss_pred ecCHHHHHHHHHHHHHHH--------------Hhhc---c--------ccCCceEEecC----chhhccccCCCCcccCC
Confidence 999999888877765211 0000 0 11122466777 6666666665443
Q ss_pred -CCceEEEechhhhhcCCcCCceEEEecccc----cCCC------CccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 524 -GLVKVVFATETLAAGINMPARTAVLSSLSK----RTAS------GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 524 -G~ikVLVAT~tla~GIDiP~v~vVI~~~~k----~~~~------~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
-..||+|+|++++..+.++.+.+||+.+-. |+.. .-.|+|..+..||.|||||. ..|.|+.+++.
T Consensus 311 ~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt---~pGkcfrLYte 386 (699)
T KOG0925|consen 311 AYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTE 386 (699)
T ss_pred CccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC---CCCceEEeecH
Confidence 235899999999999999999999986532 2222 23589999999999999998 69999999876
No 108
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=4.6e-20 Score=225.96 Aligned_cols=134 Identities=16% Similarity=0.142 Sum_probs=105.1
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC--C
Q 001047 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG--D 228 (1174)
Q Consensus 151 ~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g--~ 228 (1174)
+.....+..|++.|.-..-.+..|+ |..+.||+|||++|.+|++.....|..+-+++|+..||.|.++.+...|. +
T Consensus 73 a~~R~lg~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LG 150 (830)
T PRK12904 73 ASKRVLGMRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLG 150 (830)
T ss_pred HHHHHhCCCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 3455667788889988777776664 89999999999999999974445677888999999999999999998765 3
Q ss_pred CeEEEEeCCCCCC-----CCCcEEEEcHHHH-HHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 229 NNVGLLTGDSAIN-----REAQILIMTTEIL-RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 229 ~~v~lltGd~~~~-----~~~~IlV~Tpe~L-~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
+++++++|+.+.. -.++|+|+|+..| .+.|......-.....++.+.++||||||.|+
T Consensus 151 lsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 151 LSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred CeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 6899999976543 2589999999999 77776543221222346789999999999875
No 109
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=2.6e-20 Score=227.20 Aligned_cols=361 Identities=17% Similarity=0.177 Sum_probs=222.4
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCC-
Q 001047 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGD- 228 (1174)
Q Consensus 150 ~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~- 228 (1174)
+......+..|++.|.-+.-.+..|+ |..+.||+|||+++.+|++.....|..|-+++|+--||.|-+..+...|..
T Consensus 71 Ea~~R~~g~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 71 EGAKRVLGLRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred HHHHHHhCCCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 34556677889999988877777776 899999999999999999999999999999999999999999998886643
Q ss_pred -CeEEEEeCCCCCC-----CCCcEEEEcHHHH-----HHHHhcccccccCCCCCCceeEEEEccccccc-cCC-------
Q 001047 229 -NNVGLLTGDSAIN-----REAQILIMTTEIL-----RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS-DIS------- 289 (1174)
Q Consensus 229 -~~v~lltGd~~~~-----~~~~IlV~Tpe~L-----~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~-d~~------- 289 (1174)
++||+++|+.+.. -.++|+++|..-| ++.+... ......+.+.+.||||||.++ |..
T Consensus 149 Gl~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~----~~~~v~r~~~~aIvDEvDSiLiDeartPLiis 224 (796)
T PRK12906 149 GLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVY----KEQMVQRPLNYAIVDEVDSILIDEARTPLIIS 224 (796)
T ss_pred CCeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccc----hhhhhccCcceeeeccchheeeccCCCceecC
Confidence 6899999876543 2689999998754 3322111 122234578899999999775 111
Q ss_pred --------cHHHHHHHHHHCCC-------------------CccEEEEcc----------ccCC---h--HHHHHHHhcc
Q 001047 290 --------RGTVWEEIIIYCPK-------------------EVQIICLSA----------TVAN---A--DELAGWIGQI 327 (1174)
Q Consensus 290 --------~g~~~e~ii~~l~~-------------------~~qiI~LSA----------Tl~n---~--~~~~~~l~~~ 327 (1174)
....+..++..+.. ..+.+.||. .++| . ..+..|+...
T Consensus 225 g~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~A 304 (796)
T PRK12906 225 GQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQA 304 (796)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHH
Confidence 11122222222211 122333332 0111 1 1123343221
Q ss_pred ----------------cCceeeec-CCCCccc----------------------------------cEEeeccccccccc
Q 001047 328 ----------------HGKTELIT-SSRRPVP----------------------------------LTWYFSTKTALLPL 356 (1174)
Q Consensus 328 ----------------~~~~~~i~-~~~rpvp----------------------------------l~~~~~~~~~~~~~ 356 (1174)
.+.+.++. .+.|..| ....|.. +
T Consensus 305 l~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~k------l 378 (796)
T PRK12906 305 LRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKK------L 378 (796)
T ss_pred HHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcch------h
Confidence 01122221 1111100 0111111 0
Q ss_pred ccccccccc--hhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHH
Q 001047 357 LDEKGKHMN--RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLW 434 (1174)
Q Consensus 357 ~~~~~~~~~--~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 434 (1174)
..-.|+... ..+ ...........+..+. ..+ ... .+ .+..........+.+.+.
T Consensus 379 ~GmTGTa~~e~~Ef-~~iY~l~vv~IPtnkp---~~r---~d~----~d-------------~i~~t~~~K~~al~~~i~ 434 (796)
T PRK12906 379 SGMTGTAKTEEEEF-REIYNMEVITIPTNRP---VIR---KDS----PD-------------LLYPTLDSKFNAVVKEIK 434 (796)
T ss_pred hccCCCCHHHHHHH-HHHhCCCEEEcCCCCC---eee---eeC----CC-------------eEEcCHHHHHHHHHHHHH
Confidence 111111111 111 1111111111111100 000 000 00 000000011223333333
Q ss_pred HHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHH
Q 001047 435 HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWK 514 (1174)
Q Consensus 435 ~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R 514 (1174)
... ..+.|+||||.|+..++.++..|...++ ....+||.+...++
T Consensus 435 ~~~-~~g~pvLI~t~si~~se~ls~~L~~~gi----------------------------------~~~~Lna~~~~~Ea 479 (796)
T PRK12906 435 ERH-AKGQPVLVGTVAIESSERLSHLLDEAGI----------------------------------PHAVLNAKNHAKEA 479 (796)
T ss_pred HHH-hCCCCEEEEeCcHHHHHHHHHHHHHCCC----------------------------------CeeEecCCcHHHHH
Confidence 332 3568999999999999999999987776 56789999998888
Q ss_pred HHHHHHHhcCCceEEEechhhhhcCCc---CCce-----EEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEE
Q 001047 515 SFIEELFQRGLVKVVFATETLAAGINM---PART-----AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVV 586 (1174)
Q Consensus 515 ~~v~~~F~~G~ikVLVAT~tla~GIDi---P~v~-----vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~i 586 (1174)
..|-..++.|. |+|||++++||+|| +++. +||+ +..|-|...|.|+.|||||.| .+|.+.
T Consensus 480 ~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~--------te~pes~ri~~Ql~GRtGRqG--~~G~s~ 547 (796)
T PRK12906 480 EIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIG--------TERHESRRIDNQLRGRSGRQG--DPGSSR 547 (796)
T ss_pred HHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEe--------eecCCcHHHHHHHhhhhccCC--CCcceE
Confidence 88888888886 99999999999999 4888 9999 889999999999999999999 899999
Q ss_pred EEeCCCC
Q 001047 587 LVQTPYE 593 (1174)
Q Consensus 587 ll~~~~~ 593 (1174)
++.+-.+
T Consensus 548 ~~~sleD 554 (796)
T PRK12906 548 FYLSLED 554 (796)
T ss_pred EEEeccc
Confidence 9988765
No 110
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=3.5e-20 Score=225.22 Aligned_cols=336 Identities=21% Similarity=0.295 Sum_probs=218.0
Q ss_pred CCCCHHHHHHHHHHHcC----CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEE
Q 001047 158 FRIDKFQRSSIEAFLRG----SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGL 233 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g----~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~l 233 (1174)
..+++.|..|+..+... ...++.+.||||||.+|+-.|...+.+|+.+|+++|-.+|..|+..+|+.+|| .++++
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~v 275 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG-AKVAV 275 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC-CChhh
Confidence 35788999999998765 67899999999999999999999999999999999999999999999999999 66888
Q ss_pred EeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc---cCCcHHHHHHHHH
Q 001047 234 LTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS---DISRGTVWEEIII 299 (1174)
Q Consensus 234 ltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~---d~~~g~~~e~ii~ 299 (1174)
++++.+- +..+.|+|+|-..+. ..+.++++|||||-|.-+ +.........+..
T Consensus 276 lHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~ 342 (730)
T COG1198 276 LHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAV 342 (730)
T ss_pred hcccCChHHHHHHHHHHhcCCceEEEEechhhc-------------CchhhccEEEEeccccccccCCcCCCcCHHHHHH
Confidence 8887653 357899999965432 257899999999999755 2222222333322
Q ss_pred --HCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCcc---ccEEeecccccccccccccccccchhhhhhhhh
Q 001047 300 --YCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPV---PLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQ 374 (1174)
Q Consensus 300 --~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpv---pl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 374 (1174)
.-..++++|+-|||++ +..|.+...|....+.-..|.. +.... ++|.........
T Consensus 343 ~Ra~~~~~pvvLgSATPS----LES~~~~~~g~y~~~~L~~R~~~a~~p~v~---------iiDmr~e~~~~~------- 402 (730)
T COG1198 343 LRAKKENAPVVLGSATPS----LESYANAESGKYKLLRLTNRAGRARLPRVE---------IIDMRKEPLETG------- 402 (730)
T ss_pred HHHHHhCCCEEEecCCCC----HHHHHhhhcCceEEEEccccccccCCCcce---------EEeccccccccC-------
Confidence 2234688999999986 5666665555443333333221 11100 111100000000
Q ss_pred cccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHH
Q 001047 375 LSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454 (1174)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~ 454 (1174)
..+ .+..++.+..-.. .+.++|+|+|.|.-+
T Consensus 403 ------------------------------------~~l------------S~~Ll~~i~~~l~-~geQ~llflnRRGys 433 (730)
T COG1198 403 ------------------------------------RSL------------SPALLEAIRKTLE-RGEQVLLFLNRRGYA 433 (730)
T ss_pred ------------------------------------ccC------------CHHHHHHHHHHHh-cCCeEEEEEccCCcc
Confidence 001 1223333333222 346999999987654
Q ss_pred HHHHHHhhhcCCCCHHhHHHHH-----------------------------------------HHHHHHHhhCCccchhh
Q 001047 455 DAAVQYLEDCNLLDECEMSEVE-----------------------------------------LALKRFRILYPDAVREP 493 (1174)
Q Consensus 455 ~~la~~L~~~~~~~~~e~~~i~-----------------------------------------~~~~~~~~~~~~~~~~~ 493 (1174)
- .-.|..||++..|..+.+- ..-+++...+|+
T Consensus 434 ~--~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~----- 506 (730)
T COG1198 434 P--LLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPG----- 506 (730)
T ss_pred c--eeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCC-----
Confidence 2 2234556665555444332 222222222222
Q ss_pred HHhhhccceeEecCCCCHH--HHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEe--cccc-cCCCCc-cccCHHHH
Q 001047 494 AIKGLLKGVAAHHAGCLPI--WKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS--SLSK-RTASGR-IQLTSNEL 567 (1174)
Q Consensus 494 l~~~L~~gv~~~Hsgl~~~--~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~--~~~k-~~~~~~-~p~s~~~y 567 (1174)
..|..+-++.+.. .-+..+..|.+|+.+|||.|.+++.|.|+|+++.|.. .+.- +..+++ ...+...+
T Consensus 507 ------~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll 580 (730)
T COG1198 507 ------ARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLL 580 (730)
T ss_pred ------CcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHH
Confidence 3566666665543 2467788999999999999999999999999999742 1110 111111 22345668
Q ss_pred HHhhcccCCCCCCCccEEEEEeCC
Q 001047 568 FQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 568 ~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
.|-+|||||.+ ..|.+++-...
T Consensus 581 ~QvaGRAgR~~--~~G~VvIQT~~ 602 (730)
T COG1198 581 MQVAGRAGRAG--KPGEVVIQTYN 602 (730)
T ss_pred HHHHhhhccCC--CCCeEEEEeCC
Confidence 99999999997 78887765543
No 111
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.83 E-value=2.7e-19 Score=225.19 Aligned_cols=319 Identities=20% Similarity=0.235 Sum_probs=200.5
Q ss_pred CCCCHHHHHHHHHHHcC---C-cEEEEccCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHHhCCC
Q 001047 158 FRIDKFQRSSIEAFLRG---S-SVVVSAPTSSGKTLIAEAAAVATVAN----QRRIFYTTPLKALSNQKFREFRETFGDN 229 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g---~-~vlv~apTGsGKTlv~~~~il~~l~~----g~rvlvl~PtraLa~Q~~~~l~~~~g~~ 229 (1174)
....+.|..++..+... . .+++.||||+|||.+++.++...+.. ..+++++.|+++++++++++++..++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 34688999999988754 4 78899999999999999998877665 5699999999999999999999877654
Q ss_pred eEEEE--eCCCCCC---------------------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 230 NVGLL--TGDSAIN---------------------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 230 ~v~ll--tGd~~~~---------------------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
.+... +|..... .-..+.++||-...........+ .....-..+++|+||+|.+.
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKF--EFLALLLTSLVILDEVHLYA 351 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccch--HHHHHHHhhchhhccHHhhc
Confidence 33222 3332110 01233444444333321111000 00001135789999999998
Q ss_pred cCCcHHHHHHHHHHC-CCCccEEEEccccCCh--HHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccc
Q 001047 287 DISRGTVWEEIIIYC-PKEVQIICLSATVANA--DELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKH 363 (1174)
Q Consensus 287 d~~~g~~~e~ii~~l-~~~~qiI~LSATl~n~--~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~ 363 (1174)
+......+..++..+ .-+..+|+||||+|.. +.+...+.... .+... .... +..++..
T Consensus 352 ~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~---~~~~~-~~~~-------------~~~~e~~-- 412 (733)
T COG1203 352 DETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGR---EVVEN-AKFC-------------PKEDEPG-- 412 (733)
T ss_pred ccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhccc---ceecc-cccc-------------ccccccc--
Confidence 763333333333333 3478899999999852 33333333211 11000 0000 0000000
Q ss_pred cchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCC
Q 001047 364 MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLP 443 (1174)
Q Consensus 364 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 443 (1174)
..+....+.. .. . ....... .......+.+
T Consensus 413 ~~~~~~~~~~-----------------------------------------~~-------~-~~~~~~~-~~~~~~~~~k 442 (733)
T COG1203 413 LKRKERVDVE-----------------------------------------DG-------P-QEELIEL-ISEEVKEGKK 442 (733)
T ss_pred cccccchhhh-----------------------------------------hh-------h-hHhhhhc-chhhhccCCc
Confidence 0000000000 00 0 0000000 0111235578
Q ss_pred eEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHH--
Q 001047 444 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF-- 521 (1174)
Q Consensus 444 ~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F-- 521 (1174)
++|.|||...|..++..|+..+. .+..+||.++..+|...++.+
T Consensus 443 vlvI~NTV~~Aie~Y~~Lk~~~~----------------------------------~v~LlHSRf~~~dR~~ke~~l~~ 488 (733)
T COG1203 443 VLVIVNTVDRAIELYEKLKEKGP----------------------------------KVLLLHSRFTLKDREEKERELKK 488 (733)
T ss_pred EEEEEecHHHHHHHHHHHHhcCC----------------------------------CEEEEecccchhhHHHHHHHHHH
Confidence 99999999999999999975442 488999999999999888864
Q ss_pred --hcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 522 --QRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 522 --~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
+.+...|+|||++++.|||+. .+++|.. +.++.+.+||+||++|.|.+..|.++++....
T Consensus 489 ~~~~~~~~IvVaTQVIEagvDid-fd~mITe----------~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 489 LFKQNEGFIVVATQVIEAGVDID-FDVLITE----------LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred HHhccCCeEEEEeeEEEEEeccc-cCeeeec----------CCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 457889999999999999996 7777772 34678899999999999988888888776554
No 112
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.83 E-value=2.7e-18 Score=193.64 Aligned_cols=125 Identities=17% Similarity=0.243 Sum_probs=104.5
Q ss_pred chhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEe
Q 001047 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 505 (1174)
Q Consensus 426 ~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~ 505 (1174)
+++++.-+..-... +.+++|-+-|++.++.+.++|...|+ .+.++
T Consensus 432 vdDL~~EI~~r~~~-~eRvLVTtLTKkmAEdLT~Yl~e~gi----------------------------------kv~Yl 476 (663)
T COG0556 432 VDDLLSEIRKRVAK-NERVLVTTLTKKMAEDLTEYLKELGI----------------------------------KVRYL 476 (663)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEeehHHHHHHHHHHHHhcCc----------------------------------eEEee
Confidence 33444444443333 37899999999999999999998887 79999
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEE
Q 001047 506 HAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 585 (1174)
Q Consensus 506 Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ 585 (1174)
||.+...+|..|+...+.|.++|||.-+.+-+|+|+|.|.+|..-+... .....|-.+.+|-+|||+|. ..|.+
T Consensus 477 HSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADK---eGFLRse~SLIQtIGRAARN---~~Gkv 550 (663)
T COG0556 477 HSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADK---EGFLRSERSLIQTIGRAARN---VNGKV 550 (663)
T ss_pred eccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCc---cccccccchHHHHHHHHhhc---cCCeE
Confidence 9999999999999999999999999999999999999999996533222 34567888999999999997 68999
Q ss_pred EEEeCC
Q 001047 586 VLVQTP 591 (1174)
Q Consensus 586 ill~~~ 591 (1174)
|++.+.
T Consensus 551 IlYAD~ 556 (663)
T COG0556 551 ILYADK 556 (663)
T ss_pred EEEchh
Confidence 988765
No 113
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.82 E-value=2.3e-19 Score=202.48 Aligned_cols=293 Identities=23% Similarity=0.311 Sum_probs=211.2
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC-----CCCcEEEE
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAIN-----REAQILIM 249 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~-----~~~~IlV~ 249 (1174)
+-++-+|||.||||. -+++.+...++.+|.-|.|-||.++|+++.+. ++.+.++||..... ..++.+-|
T Consensus 192 kIi~H~GPTNSGKTy----~ALqrl~~aksGvycGPLrLLA~EV~~r~na~--gipCdL~TGeE~~~~~~~~~~a~hvSc 265 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTY----RALQRLKSAKSGVYCGPLRLLAHEVYDRLNAL--GIPCDLLTGEERRFVLDNGNPAQHVSC 265 (700)
T ss_pred eEEEEeCCCCCchhH----HHHHHHhhhccceecchHHHHHHHHHHHhhhc--CCCccccccceeeecCCCCCcccceEE
Confidence 456779999999995 44667777788999999999999999999984 36688899976433 24778888
Q ss_pred cHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC-CCCccEEEEccccCChHHHHHHHhccc
Q 001047 250 TTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC-PKEVQIICLSATVANADELAGWIGQIH 328 (1174)
Q Consensus 250 Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l-~~~~qiI~LSATl~n~~~~~~~l~~~~ 328 (1174)
|-|+.. .-..+++.||||+++|.|..||-.|...+.-+ ...+++.|=-|-+ ++-.-+....
T Consensus 266 TVEM~s--------------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvl----dlV~~i~k~T 327 (700)
T KOG0953|consen 266 TVEMVS--------------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVL----DLVRKILKMT 327 (700)
T ss_pred EEEEee--------------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHH----HHHHHHHhhc
Confidence 877432 12368999999999999999999998765433 3344444433332 2222233233
Q ss_pred CceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccc
Q 001047 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSF 408 (1174)
Q Consensus 329 ~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (1174)
|....+..-.|-.|+...
T Consensus 328 Gd~vev~~YeRl~pL~v~-------------------------------------------------------------- 345 (700)
T KOG0953|consen 328 GDDVEVREYERLSPLVVE-------------------------------------------------------------- 345 (700)
T ss_pred CCeeEEEeecccCcceeh--------------------------------------------------------------
Confidence 333333333332222210
Q ss_pred cccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCc
Q 001047 409 GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPD 488 (1174)
Q Consensus 409 ~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~ 488 (1174)
. ..+..+.+-..+-||| |+|++....+...+...+.
T Consensus 346 -------------------~--~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~---------------------- 381 (700)
T KOG0953|consen 346 -------------------E--TALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGN---------------------- 381 (700)
T ss_pred -------------------h--hhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcC----------------------
Confidence 0 0111222223456665 7899988877777664442
Q ss_pred cchhhHHhhhccceeEecCCCCHHHHHHHHHHHhc--CCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHH
Q 001047 489 AVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR--GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 566 (1174)
Q Consensus 489 ~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~--G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~ 566 (1174)
..+++++|+|+|+.|..--.+|.+ +..+||||||+++||+|+.-.++||.+..||+|....+++..+
T Consensus 382 -----------~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~IrRiiF~sl~Kysg~e~~~it~sq 450 (700)
T KOG0953|consen 382 -----------HKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLNIRRIIFYSLIKYSGRETEDITVSQ 450 (700)
T ss_pred -----------cceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccceeEEEEeecccCCcccceeccHHH
Confidence 258999999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCC-CccEEEEEeCCCCCHHHHHHHhhCCCccee
Q 001047 567 LFQMAGRAGRRGID-NRGHVVLVQTPYEGAEECCKLLFAGVEPLV 610 (1174)
Q Consensus 567 y~Qr~GRAGR~G~d-~~G~~ill~~~~~~~~~~~~~~~~~~~pl~ 610 (1174)
..|.+|||||.|.. ..|.+-.+. .++...+.+.+..+.+|+.
T Consensus 451 ikQIAGRAGRf~s~~~~G~vTtl~--~eDL~~L~~~l~~p~epi~ 493 (700)
T KOG0953|consen 451 IKQIAGRAGRFGSKYPQGEVTTLH--SEDLKLLKRILKRPVEPIK 493 (700)
T ss_pred HHHHhhcccccccCCcCceEEEee--HhhHHHHHHHHhCCchHHH
Confidence 99999999998743 457666665 3466667777777777763
No 114
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.81 E-value=1.9e-18 Score=218.36 Aligned_cols=375 Identities=15% Similarity=0.113 Sum_probs=216.5
Q ss_pred CCCHHHHHHHHHHH----cCCcEEEEccCCcchHHHHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHHhCCCeE
Q 001047 159 RIDKFQRSSIEAFL----RGSSVVVSAPTSSGKTLIAEAAAVATVA---NQRRIFYTTPLKALSNQKFREFRETFGDNNV 231 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll----~g~~vlv~apTGsGKTlv~~~~il~~l~---~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v 231 (1174)
.+++||.+++..+. +|.+.|++-.+|.|||+.++..+..... ..+.+|||+|. +|..||.++|.++++...+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 68999999999875 5678999999999999987655433222 23578999995 7888999999998888888
Q ss_pred EEEeCCCCC----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC
Q 001047 232 GLLTGDSAI----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC 301 (1174)
Q Consensus 232 ~lltGd~~~----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l 301 (1174)
..++|+... ....+|+|+|++.+.+.... ..-.++++||+||||++-. ........+..+
T Consensus 248 ~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--------L~k~~W~~VIvDEAHrIKN--~~Sklskalr~L 317 (1033)
T PLN03142 248 VKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--------LKRFSWRYIIIDEAHRIKN--ENSLLSKTMRLF 317 (1033)
T ss_pred EEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--------hccCCCCEEEEcCccccCC--HHHHHHHHHHHh
Confidence 888886421 23578999999998764321 1112578999999999964 334444555555
Q ss_pred CCCccEEEEccccC--ChHHHHHHHhcccCceee----e----cCC---------------CCccccEEeeccc-ccccc
Q 001047 302 PKEVQIICLSATVA--NADELAGWIGQIHGKTEL----I----TSS---------------RRPVPLTWYFSTK-TALLP 355 (1174)
Q Consensus 302 ~~~~qiI~LSATl~--n~~~~~~~l~~~~~~~~~----i----~~~---------------~rpvpl~~~~~~~-~~~~~ 355 (1174)
.. ...++||+||- |..++-..+..+.....- + ... .+|+-+...-... ..+.+
T Consensus 318 ~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPp 396 (1033)
T PLN03142 318 ST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 396 (1033)
T ss_pred hc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCC
Confidence 43 45689999984 345554444433211000 0 000 0000000000000 00000
Q ss_pred ccc----ccccccchhhhhhhhhcccccCCCccCCCccccccc--cccC--CCCCcccccc--cccccchhhhhhhhhcC
Q 001047 356 LLD----EKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR--KHAD--MNSNNIVTSF--GQHQLSKNSINAIRRSQ 425 (1174)
Q Consensus 356 ~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 425 (1174)
... -........+....+.... ..........+... .... -+....+... ........... -....
T Consensus 397 K~e~iv~v~LS~~Qk~lY~~ll~k~~---~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~li-e~SgK 472 (1033)
T PLN03142 397 KKETILKVGMSQMQKQYYKALLQKDL---DVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLV-ENSGK 472 (1033)
T ss_pred ceeEEEeeCCCHHHHHHHHHHHHHHH---HHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHh-hhhhH
Confidence 000 0000000011000000000 00000000000000 0000 0000000000 00000000000 00011
Q ss_pred chhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEe
Q 001047 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 505 (1174)
Q Consensus 426 ~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~ 505 (1174)
...+..++..+. ..+.++|||+......+.+..+|...++ +...+
T Consensus 473 l~lLdkLL~~Lk-~~g~KVLIFSQft~~LdiLed~L~~~g~----------------------------------~y~rI 517 (1033)
T PLN03142 473 MVLLDKLLPKLK-ERDSRVLIFSQMTRLLDILEDYLMYRGY----------------------------------QYCRI 517 (1033)
T ss_pred HHHHHHHHHHHH-hcCCeEEeehhHHHHHHHHHHHHHHcCC----------------------------------cEEEE
Confidence 111222333333 3457999999988888878777765554 57789
Q ss_pred cCCCCHHHHHHHHHHHhc---CCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCc
Q 001047 506 HAGCLPIWKSFIEELFQR---GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 582 (1174)
Q Consensus 506 Hsgl~~~~R~~v~~~F~~---G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~ 582 (1174)
||+++..+|+.+++.|.. +..-+|++|.+.+.|||+...++||+ ++.++++....|+.||+.|.|+...
T Consensus 518 dGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi--------yD~dWNP~~d~QAidRaHRIGQkk~ 589 (1033)
T PLN03142 518 DGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL--------YDSDWNPQVDLQAQDRAHRIGQKKE 589 (1033)
T ss_pred CCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE--------eCCCCChHHHHHHHHHhhhcCCCce
Confidence 999999999999999975 33467999999999999999999999 8999999999999999999998887
Q ss_pred cEEEEEeCCC
Q 001047 583 GHVVLVQTPY 592 (1174)
Q Consensus 583 G~~ill~~~~ 592 (1174)
-.++-+.+..
T Consensus 590 V~VyRLIt~g 599 (1033)
T PLN03142 590 VQVFRFCTEY 599 (1033)
T ss_pred EEEEEEEeCC
Confidence 7777666553
No 115
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.80 E-value=4.4e-18 Score=202.20 Aligned_cols=338 Identities=17% Similarity=0.201 Sum_probs=199.5
Q ss_pred CCCCHHHHHHHHHHH----cC-CcEEEEccCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHHhCCCe
Q 001047 158 FRIDKFQRSSIEAFL----RG-SSVVVSAPTSSGKTLIAEAAAVATVAN--QRRIFYTTPLKALSNQKFREFRETFGDNN 230 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll----~g-~~vlv~apTGsGKTlv~~~~il~~l~~--g~rvlvl~PtraLa~Q~~~~l~~~~g~~~ 230 (1174)
..++.+|..||..+. +| +.+|+++.||+|||..++..|...++. -+|||+++-+++|..|.+..|...++...
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcc
Confidence 468999999997754 44 469999999999999887776665554 46999999999999999999999887665
Q ss_pred EEEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEE
Q 001047 231 VGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 310 (1174)
Q Consensus 231 v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~L 310 (1174)
......+.....++.|.|+|...+...+...... ........+++||+||||+ +....|..++.++. .-++++
T Consensus 244 ~~n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~-~~~f~~g~FDlIvIDEaHR----gi~~~~~~I~dYFd--A~~~gL 316 (875)
T COG4096 244 KMNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDE-YRRFGPGFFDLIVIDEAHR----GIYSEWSSILDYFD--AATQGL 316 (875)
T ss_pred ceeeeecccCCcceeEEEeehHHHHhhhhccccc-cccCCCCceeEEEechhhh----hHHhhhHHHHHHHH--HHHHhh
Confidence 5555555555567899999999998877653111 1233455799999999999 66777888888875 335666
Q ss_pred ccccCChHHHH--HHHhcccCceeeec----------CCCCccccEEeecccccccccccccccccchhhhhhhhhcccc
Q 001047 311 SATVANADELA--GWIGQIHGKTELIT----------SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTS 378 (1174)
Q Consensus 311 SATl~n~~~~~--~~l~~~~~~~~~i~----------~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 378 (1174)
||||.+..+.. .+++. .++.... .+++++-+...+. ..|-.... + +..
T Consensus 317 TATP~~~~d~~T~~~F~g--~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~----------~~G~~~~~-~-------ser 376 (875)
T COG4096 317 TATPKETIDRSTYGFFNG--EPTYAYSLEEAVEDGFLVPYKVIRIDTDFD----------LDGWKPDA-G-------SER 376 (875)
T ss_pred ccCcccccccccccccCC--CcceeecHHHHhhccccCCCCceEEeeecc----------ccCcCcCc-c-------chh
Confidence 99986532222 23321 0111000 0011111110000 00000000 0 000
Q ss_pred cCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhC---C--CCCeEEEecCHHH
Q 001047 379 EVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR---D--MLPAIWFIFNRRG 453 (1174)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~---~--~~~~IVF~~sr~~ 453 (1174)
... .... .... + ..+....+.. ..........+...+...... + .+++||||.+..+
T Consensus 377 ek~--------~g~~---i~~d--d--~~~~~~d~dr---~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dH 438 (875)
T COG4096 377 EKL--------QGEA---IDED--D--QNFEARDFDR---TLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDH 438 (875)
T ss_pred hhh--------hccc---cCcc--c--ccccccccch---hccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHH
Confidence 000 0000 0000 0 0000000000 000111122334444444433 2 4689999999999
Q ss_pred HHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHh-cCCceEEEec
Q 001047 454 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQ-RGLVKVVFAT 532 (1174)
Q Consensus 454 ~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~-~G~ikVLVAT 532 (1174)
|+.+...|.+.- |+.. .+-+..+.|. ....+..|-.-+. +..-+|.|+.
T Consensus 439 Ae~i~~~~~~~y---------------------pe~~--------~~~a~~IT~d-~~~~q~~Id~f~~ke~~P~Iaitv 488 (875)
T COG4096 439 AERIREALVNEY---------------------PEYN--------GRYAMKITGD-AEQAQALIDNFIDKEKYPRIAITV 488 (875)
T ss_pred HHHHHHHHHHhC---------------------cccc--------CceEEEEecc-chhhHHHHHHHHhcCCCCceEEeh
Confidence 999998886322 1100 0012223222 2223333333333 4667899999
Q ss_pred hhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCC
Q 001047 533 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578 (1174)
Q Consensus 533 ~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G 578 (1174)
+.+..|||+|.+..++. ...-.|...|+||+||+-|.-
T Consensus 489 dlL~TGiDvpev~nlVF--------~r~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 489 DLLTTGVDVPEVVNLVF--------DRKVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred hhhhcCCCchheeeeee--------hhhhhhHHHHHHHhcCccccC
Confidence 99999999999888776 455679999999999999964
No 116
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.80 E-value=1.4e-17 Score=205.07 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=99.3
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
.+.++||||+|++.++.+++.|...|+ .+.++||++.+.+|..++.
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi----------------------------------~~~~lh~~~~~~eR~~~l~ 486 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGI----------------------------------KVRYLHSEIDTLERVEIIR 486 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhcc----------------------------------ceeeeeCCCCHHHHHHHHH
Confidence 456899999999999999999987665 5788999999999999999
Q ss_pred HHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
.|+.|.+.|||||+.+++|+|+|++++||+...-. +..|.+...|+||+|||||. ..|.|+++.+...
T Consensus 487 ~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dadi---fG~p~~~~~~iqriGRagR~---~~G~vi~~~~~~~ 554 (655)
T TIGR00631 487 DLRLGEFDVLVGINLLREGLDLPEVSLVAILDADK---EGFLRSERSLIQTIGRAARN---VNGKVIMYADKIT 554 (655)
T ss_pred HHhcCCceEEEEcChhcCCeeeCCCcEEEEeCccc---ccCCCCHHHHHHHhcCCCCC---CCCEEEEEEcCCC
Confidence 99999999999999999999999999998832111 23678999999999999997 4799998887644
No 117
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=5.1e-18 Score=207.27 Aligned_cols=133 Identities=17% Similarity=0.146 Sum_probs=101.1
Q ss_pred HhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC--CC
Q 001047 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG--DN 229 (1174)
Q Consensus 152 l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g--~~ 229 (1174)
-+..++..+++.|.-.--.+.+| -|..++||.|||++|.+|++.....|..|.|++|+..||.|.++.+...|. ++
T Consensus 75 a~R~lgm~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGl 152 (908)
T PRK13107 75 SKRVFEMRHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGL 152 (908)
T ss_pred HHHHhCCCcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 34456667788886555455444 588999999999999999998888888999999999999999888887543 36
Q ss_pred eEEEEeCCCCCCC-----CCcEEEEcHHHH-HHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 230 NVGLLTGDSAINR-----EAQILIMTTEIL-RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 230 ~v~lltGd~~~~~-----~~~IlV~Tpe~L-~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
+|+.+.|+..... .++|+++||+.| .+.|......-........+.++||||||.++
T Consensus 153 sv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 153 TVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred eEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 7888888765321 689999999998 77766532211112234678999999999876
No 118
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=1.1e-17 Score=204.41 Aligned_cols=129 Identities=14% Similarity=0.147 Sum_probs=104.6
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC--CCeEEEEe
Q 001047 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG--DNNVGLLT 235 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g--~~~v~llt 235 (1174)
|.++|+|.++++.+..++++++.++||+|||++|.+|++..+..+..++|++||+.||.|.++.+...+. +++++.+.
T Consensus 91 ~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~ 170 (970)
T PRK12899 91 WDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLV 170 (970)
T ss_pred CCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 3479999999999999999999999999999999999998777777799999999999999999887543 36788888
Q ss_pred CCCCCCC-----CCcEEEEcHHHH-HHHHhccccccc-CCCCCCceeEEEEccccccc
Q 001047 236 GDSAINR-----EAQILIMTTEIL-RNMLYQSVGMVS-SESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 236 Gd~~~~~-----~~~IlV~Tpe~L-~~~L~~~~~~~~-~~~~l~~v~lVIiDEaH~l~ 286 (1174)
|+..... .++|+|+||++| .+++....-... .....+.+.++||||||.|+
T Consensus 171 GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 171 SGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred CCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 8876432 589999999999 998876311100 01123467899999999885
No 119
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.78 E-value=1.4e-16 Score=197.90 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=98.6
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
.+.++||||.+++.|+.++..|...|+ .+.++||++.+.+|..++.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi----------------------------------~~~~~h~~~~~~~R~~~l~ 490 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGI----------------------------------KVRYLHSDIDTLERVEIIR 490 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcce----------------------------------eEEEEECCCCHHHHHHHHH
Confidence 456899999999999999999987665 6888999999999999999
Q ss_pred HHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
.|+.|.+.|||||+.+++|+|+|++++||+..... +..|.+...|+||+||+||. ..|.|+++++..
T Consensus 491 ~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~ei---fG~~~~~~~yiqr~GR~gR~---~~G~~i~~~~~~ 557 (652)
T PRK05298 491 DLRLGEFDVLVGINLLREGLDIPEVSLVAILDADK---EGFLRSERSLIQTIGRAARN---VNGKVILYADKI 557 (652)
T ss_pred HHHcCCceEEEEeCHHhCCccccCCcEEEEeCCcc---cccCCCHHHHHHHhccccCC---CCCEEEEEecCC
Confidence 99999999999999999999999999998843211 23567899999999999995 589999998753
No 120
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.77 E-value=2.1e-17 Score=206.09 Aligned_cols=147 Identities=17% Similarity=0.200 Sum_probs=98.9
Q ss_pred CCHHHHHHHHHHH----c------CCcEEEEccCCcchHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHHhC
Q 001047 160 IDKFQRSSIEAFL----R------GSSVVVSAPTSSGKTLIAEAAAVATV--ANQRRIFYTTPLKALSNQKFREFRETFG 227 (1174)
Q Consensus 160 ~~~~Q~~ai~~ll----~------g~~vlv~apTGsGKTlv~~~~il~~l--~~g~rvlvl~PtraLa~Q~~~~l~~~~g 227 (1174)
++++|..|+..+. + .+..+|.++||||||+++...+...+ ....++||++|+++|..|+.+.|.....
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 7889999998764 2 25799999999999999877765544 3456999999999999999999998543
Q ss_pred CCeEEEEe-CC---CCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCc-eeEEEEccccccccCCcHHHHHHHH-HHC
Q 001047 228 DNNVGLLT-GD---SAINREAQILIMTTEILRNMLYQSVGMVSSESGLFD-VDVIVLDEVHYLSDISRGTVWEEII-IYC 301 (1174)
Q Consensus 228 ~~~v~llt-Gd---~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~-v~lVIiDEaH~l~d~~~g~~~e~ii-~~l 301 (1174)
......-. ++ .-.+.+..|+|+|.+.|.+.+..... ...... --+||+||||+.. .+. |...+ ..+
T Consensus 319 ~~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~----~~~~~~~~~lvIvDEaHrs~---~~~-~~~~l~~~~ 390 (667)
T TIGR00348 319 DCAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEE----KFPVDRKEVVVIFDEAHRSQ---YGE-LAKNLKKAL 390 (667)
T ss_pred CCCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhh----ccCCCCCCEEEEEEcCcccc---chH-HHHHHHhhC
Confidence 21111000 00 00123578999999999865432110 001111 1289999999963 333 44444 455
Q ss_pred CCCccEEEEccccC
Q 001047 302 PKEVQIICLSATVA 315 (1174)
Q Consensus 302 ~~~~qiI~LSATl~ 315 (1174)
| +..++||||||-
T Consensus 391 p-~a~~lGfTaTP~ 403 (667)
T TIGR00348 391 K-NASFFGFTGTPI 403 (667)
T ss_pred C-CCcEEEEeCCCc
Confidence 4 578999999985
No 121
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.77 E-value=1.5e-16 Score=204.62 Aligned_cols=144 Identities=15% Similarity=0.206 Sum_probs=96.0
Q ss_pred hHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecC
Q 001047 428 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 507 (1174)
Q Consensus 428 ~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hs 507 (1174)
.+...+..+.....+++|||++|.+..+.++..|..... ..++..+..
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~--------------------------------~~~~~~l~q 708 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPE--------------------------------FEGYEVLAQ 708 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcc--------------------------------ccCceEEec
Confidence 445556666666668999999999999999888753211 012333333
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceE---EEeccccc-------------------CC--CCccccC
Q 001047 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA---VLSSLSKR-------------------TA--SGRIQLT 563 (1174)
Q Consensus 508 gl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~v---VI~~~~k~-------------------~~--~~~~p~s 563 (1174)
+.. ..|..+++.|++|...||+||+.+.+|||+|+..+ ||..++.- ++ .+..|..
T Consensus 709 ~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A 787 (850)
T TIGR01407 709 GIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMA 787 (850)
T ss_pred CCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHH
Confidence 433 57889999999999999999999999999999664 34432211 00 1223555
Q ss_pred HHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhhCCC
Q 001047 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606 (1174)
Q Consensus 564 ~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~~~~ 606 (1174)
...+.|.+||.-|... ..|.++++...... ..|-+.+....
T Consensus 788 ~~~l~Qa~GRlIRs~~-D~G~v~ilD~R~~~-~~Yg~~~~~sL 828 (850)
T TIGR01407 788 IIRLRQALGRLIRREN-DRGSIVILDRRLVG-KRYGKRFEKSL 828 (850)
T ss_pred HHHHHHhhccccccCC-ceEEEEEEcccccc-chHHHHHHHhC
Confidence 6789999999999864 57876666555332 23444444433
No 122
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.75 E-value=1.3e-16 Score=192.13 Aligned_cols=128 Identities=22% Similarity=0.292 Sum_probs=102.7
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCC-
Q 001047 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGD- 228 (1174)
Q Consensus 150 ~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~- 228 (1174)
+-|++..+|.|+..|+-....+..|+++-+.||||.|||+-.++..+-...+|++++|++||..|+.|.++.+.++...
T Consensus 73 ~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 73 EFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 4478888999999999999999999999999999999998877777766678899999999999999999999985421
Q ss_pred ----CeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 229 ----NNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 229 ----~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
..+. ++|..+. +.+.+|+|+|..-|......- .--++++|++|.+|.++
T Consensus 153 ~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L--------~~~kFdfifVDDVDA~L 216 (1187)
T COG1110 153 GSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL--------SKLKFDFIFVDDVDAIL 216 (1187)
T ss_pred CCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh--------cccCCCEEEEccHHHHH
Confidence 1223 5665432 347999999999887655431 01279999999999765
No 123
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=1.7e-16 Score=178.30 Aligned_cols=335 Identities=14% Similarity=0.071 Sum_probs=223.4
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHH------hCC
Q 001047 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA--NQRRIFYTTPLKALSNQKFREFRET------FGD 228 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~--~g~rvlvl~PtraLa~Q~~~~l~~~------~g~ 228 (1174)
.-.+..+|.+++..+.+|+++++.-.|.+||.+++.......+. .....+++.|+++++....+-+.-. ...
T Consensus 284 ~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~ 363 (1034)
T KOG4150|consen 284 GESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKS 363 (1034)
T ss_pred ccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhc
Confidence 34577899999999999999999999999999999988766554 4558899999999998754433211 112
Q ss_pred CeEEEEeCCCCC------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHH----HHH
Q 001047 229 NNVGLLTGDSAI------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWE----EII 298 (1174)
Q Consensus 229 ~~v~lltGd~~~------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e----~ii 298 (1174)
..|....|++.. ..+..++++.|..........+.-| ...+-+..++++||+|.... -++.... .+.
T Consensus 364 A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~--~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~~~R~L~ 440 (1034)
T KOG4150|consen 364 AYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCY--NVPVFEELCKDTNSCALYLF-PTKALAQDQLRALS 440 (1034)
T ss_pred ceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhcccc--ccHHHHHHHhcccceeeeec-chhhHHHHHHHHHH
Confidence 224444454432 2478899999987655443322221 23455678999999998764 3443333 332
Q ss_pred HHC-----CCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhh
Q 001047 299 IYC-----PKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYL 373 (1174)
Q Consensus 299 ~~l-----~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 373 (1174)
..+ ..+.|++-.|||+...-.+..-+... ....++..+..|..-.+++.......|.-..
T Consensus 441 ~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~-~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~-------------- 505 (1034)
T KOG4150|consen 441 DLIKGFEASINMGVYDGDTPYKDRTRLRSELANL-SELELVTIDGSPSSEKLFVLWNPSAPPTSKS-------------- 505 (1034)
T ss_pred HHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCC-cceEEEEecCCCCccceEEEeCCCCCCcchh--------------
Confidence 222 45789999999997654333322222 2467777787776665555433222210000
Q ss_pred hcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHH
Q 001047 374 QLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453 (1174)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~ 453 (1174)
-+...+-....++.++.. ++.++|.||++|+-
T Consensus 506 -----------------------------------------------~~~~~i~E~s~~~~~~i~-~~~R~IAFC~~R~~ 537 (1034)
T KOG4150|consen 506 -----------------------------------------------EKSSKVVEVSHLFAEMVQ-HGLRCIAFCPSRKL 537 (1034)
T ss_pred -----------------------------------------------hhhhHHHHHHHHHHHHHH-cCCcEEEeccHHHH
Confidence 000112223334444444 35799999999999
Q ss_pred HHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEech
Q 001047 454 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE 533 (1174)
Q Consensus 454 ~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~ 533 (1174)
|+-+....++.-. +.. ..|--.|..+.||.+..+|..|+...-.|.+.-+|||+
T Consensus 538 CEL~~~~~R~I~~--ET~------------------------~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTN 591 (1034)
T KOG4150|consen 538 CELVLCLTREILA--ETA------------------------PHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATN 591 (1034)
T ss_pred HHHHHHHHHHHHH--Hhh------------------------HHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecc
Confidence 9887655442110 000 01112355678999999999999999999999999999
Q ss_pred hhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 534 TLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 534 tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
+++.||||...+.|++ ...|.|.+.++|..|||||+..+.-...+....|
T Consensus 592 ALELGIDIG~LDAVl~--------~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~P 641 (1034)
T KOG4150|consen 592 ALELGIDIGHLDAVLH--------LGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGP 641 (1034)
T ss_pred hhhhccccccceeEEE--------ccCchhHHHHHHHhccccccCCCceEEEEEeccc
Confidence 9999999999999999 7899999999999999999985444444444444
No 124
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.70 E-value=2.6e-16 Score=167.04 Aligned_cols=157 Identities=33% Similarity=0.453 Sum_probs=130.3
Q ss_pred cCCCCCCHHHHHHHHHHHcC-CcEEEEccCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHHHhCC---
Q 001047 155 IYDFRIDKFQRSSIEAFLRG-SSVVVSAPTSSGKTLIAEAAAVATVANQ--RRIFYTTPLKALSNQKFREFRETFGD--- 228 (1174)
Q Consensus 155 ~~~~~~~~~Q~~ai~~ll~g-~~vlv~apTGsGKTlv~~~~il~~l~~g--~rvlvl~PtraLa~Q~~~~l~~~~g~--- 228 (1174)
....+++++|.+++..+..+ +.+++.+|||+|||.++..+++..+..+ .+++|++|+++++.|++..+...+..
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 34567999999999999998 9999999999999999999999888765 79999999999999999999987754
Q ss_pred CeEEEEeCCCC------CCCCC-cEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC
Q 001047 229 NNVGLLTGDSA------INREA-QILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC 301 (1174)
Q Consensus 229 ~~v~lltGd~~------~~~~~-~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l 301 (1174)
.....+.+... ..... +|+++|++.+.+.+... ......+++||+||+|.+....+...+..++..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~------~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 84 KVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEND------LLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred EEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcC------CcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 33444555442 23334 99999999999988752 2356688999999999998767888888888888
Q ss_pred CCCccEEEEccccCCh
Q 001047 302 PKEVQIICLSATVANA 317 (1174)
Q Consensus 302 ~~~~qiI~LSATl~n~ 317 (1174)
+...+++++|||+++.
T Consensus 158 ~~~~~~v~~saT~~~~ 173 (201)
T smart00487 158 PKNVQLLLLSATPPEE 173 (201)
T ss_pred CccceEEEEecCCchh
Confidence 8889999999999753
No 125
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.69 E-value=2.2e-16 Score=175.75 Aligned_cols=308 Identities=18% Similarity=0.171 Sum_probs=202.1
Q ss_pred CCCHHHHHHHHHHHcC---CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHh--CCCeEEE
Q 001047 159 RIDKFQRSSIEAFLRG---SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETF--GDNNVGL 233 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g---~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~--g~~~v~l 233 (1174)
.++|+|.+++..+..+ ++.||+.|.|+|||++...++... .+++||++..-.-+.||...|..+. .+..++.
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti---kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~r 378 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI---KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICR 378 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee---cccEEEEecCccCHHHHHHHHHhhcccCccceEE
Confidence 4899999999998854 689999999999999987766543 6789999999999999999998753 3457899
Q ss_pred EeCCCCC--CCCCcEEEEcHHHHHHHHhcccccc--cCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEE
Q 001047 234 LTGDSAI--NREAQILIMTTEILRNMLYQSVGMV--SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIIC 309 (1174)
Q Consensus 234 ltGd~~~--~~~~~IlV~Tpe~L~~~L~~~~~~~--~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~ 309 (1174)
+|.|..- ..++.|+|+|+.++..--.++...- .....-..++++|+||+|.+....|+.++.-+-.++ -++
T Consensus 379 FTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHc-----KLG 453 (776)
T KOG1123|consen 379 FTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHC-----KLG 453 (776)
T ss_pred eeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHh-----hcc
Confidence 9988764 3578899999986643222111100 001112478999999999988777777777666666 489
Q ss_pred EccccCChHHH--------------HHHHhcccCc-eeeecCCCCccccEEeecccccccccccccccccchhhhhhhhh
Q 001047 310 LSATVANADEL--------------AGWIGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQ 374 (1174)
Q Consensus 310 LSATl~n~~~~--------------~~~l~~~~~~-~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 374 (1174)
||||+-..++- ++|+....+. +..+.. ....+ .|...+...|+.
T Consensus 454 LTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqC-------------aEVWC--------pMt~eFy~eYL~ 512 (776)
T KOG1123|consen 454 LTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQC-------------AEVWC--------PMTPEFYREYLR 512 (776)
T ss_pred ceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEee-------------eeeec--------CCCHHHHHHHHh
Confidence 99998543211 2233222110 000000 00001 122333334442
Q ss_pred cccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHH
Q 001047 375 LSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 454 (1174)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~ 454 (1174)
......... ..|..+. . ...+.|...+++.+.++|||..+.-..
T Consensus 513 ~~t~kr~lL---------------------------yvMNP~K--------F-raCqfLI~~HE~RgDKiIVFsDnvfAL 556 (776)
T KOG1123|consen 513 ENTRKRMLL---------------------------YVMNPNK--------F-RACQFLIKFHERRGDKIIVFSDNVFAL 556 (776)
T ss_pred hhhhhhhee---------------------------eecCcch--------h-HHHHHHHHHHHhcCCeEEEEeccHHHH
Confidence 111000000 0011111 1 123344455566678999998876555
Q ss_pred HHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhc-CCceEEEech
Q 001047 455 DAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR-GLVKVVFATE 533 (1174)
Q Consensus 455 ~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~-G~ikVLVAT~ 533 (1174)
...|-.| |--+++|..++.+|..|++.|+- ..++.+|-.-
T Consensus 557 k~YAikl---------------------------------------~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSK 597 (776)
T KOG1123|consen 557 KEYAIKL---------------------------------------GKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSK 597 (776)
T ss_pred HHHHHHc---------------------------------------CCceEECCCchhHHHHHHHhcccCCccceEEEee
Confidence 4444333 45678999999999999999996 6789999999
Q ss_pred hhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCC
Q 001047 534 TLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRR 577 (1174)
Q Consensus 534 tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~ 577 (1174)
+....||+|..+++|.-.+.+ -|...-.||.||.-|+
T Consensus 598 VgDtSiDLPEAnvLIQISSH~-------GSRRQEAQRLGRILRA 634 (776)
T KOG1123|consen 598 VGDTSIDLPEANVLIQISSHG-------GSRRQEAQRLGRILRA 634 (776)
T ss_pred ccCccccCCcccEEEEEcccc-------cchHHHHHHHHHHHHH
Confidence 999999999999999854333 2556678999998886
No 126
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=2.1e-14 Score=176.46 Aligned_cols=108 Identities=16% Similarity=0.091 Sum_probs=94.6
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
.+.|+||||.|+..++.++..|...++ ....+|+ .+.+|+..+.
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~gI----------------------------------~h~vLna--kq~~REa~Ii 640 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAKRI----------------------------------AHNVLNA--KQHDREAEIV 640 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCC----------------------------------CceeecC--CHHHhHHHHH
Confidence 568999999999999999999987776 4567786 6789999999
Q ss_pred HHhcCCceEEEechhhhhcCCcC---CceE-----EEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 520 LFQRGLVKVVFATETLAAGINMP---ARTA-----VLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~tla~GIDiP---~v~v-----VI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
.|..+...|+|||++++||+||+ .|.. ||. ...+-|...|.|+.|||||.| ..|.+++|.+.
T Consensus 641 a~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg--------terhes~Rid~Ql~GRtGRqG--dpGsS~ffvSl 710 (1025)
T PRK12900 641 AEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG--------SERHESRRIDRQLRGRAGRQG--DPGESVFYVSL 710 (1025)
T ss_pred HhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC--------CCCCchHHHHHHHhhhhhcCC--CCcceEEEech
Confidence 99999999999999999999999 4433 366 677889999999999999999 89999999987
Q ss_pred CC
Q 001047 592 YE 593 (1174)
Q Consensus 592 ~~ 593 (1174)
.+
T Consensus 711 eD 712 (1025)
T PRK12900 711 ED 712 (1025)
T ss_pred hH
Confidence 65
No 127
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.61 E-value=2.7e-13 Score=172.23 Aligned_cols=66 Identities=27% Similarity=0.307 Sum_probs=54.1
Q ss_pred CCCCCHHHHHHHHH----HHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHH-HHHH
Q 001047 157 DFRIDKFQRSSIEA----FLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKF-REFR 223 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~----ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~-~~l~ 223 (1174)
+|++++-|.+-... +.+++.+++.|+||+|||++|++|++... .+.+++|.+||++|++|+. +++.
T Consensus 243 ~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-~~~~vvI~t~T~~Lq~Ql~~~~i~ 313 (820)
T PRK07246 243 GLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-DQRQIIVSVPTKILQDQIMAEEVK 313 (820)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHH
Confidence 47899999984443 44668899999999999999999988754 5789999999999999994 4343
No 128
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=1.9e-13 Score=163.86 Aligned_cols=131 Identities=21% Similarity=0.231 Sum_probs=104.0
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC--
Q 001047 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG-- 227 (1174)
Q Consensus 150 ~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g-- 227 (1174)
+......+..|++.|.-+.-.+++|+ |..+.||.|||+++.+|++.....|..|-+++|+--||.|-++.+...|.
T Consensus 69 Ea~~R~lg~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 69 EAAERTLGLRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred HHHHHHcCCCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 34456677889999999998888874 67999999999999999998888999999999999999999999888664
Q ss_pred CCeEEEEeCCCCCC-----CCCcEEEEcHHH-----HHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 228 DNNVGLLTGDSAIN-----REAQILIMTTEI-----LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 228 ~~~v~lltGd~~~~-----~~~~IlV~Tpe~-----L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
+++|++++++.+.. -.++|+++|..- |++.+.... .....+.+.+.||||||.++
T Consensus 147 GLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~----~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 147 GLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDV----ADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred CCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccCh----HhhcCCccceeeecchhhhe
Confidence 36899998876543 268999999874 444443211 22234578899999999775
No 129
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.58 E-value=6.8e-15 Score=154.87 Aligned_cols=148 Identities=24% Similarity=0.351 Sum_probs=103.8
Q ss_pred CCCCHHHHHHHHHHHc-------CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCe
Q 001047 158 FRIDKFQRSSIEAFLR-------GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNN 230 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~-------g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~ 230 (1174)
++|+++|.+|+..+.. .+.+++.+|||||||.++...+.+... +++|++|++.|++|++..|.......
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---~~l~~~p~~~l~~Q~~~~~~~~~~~~- 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---KVLIVAPNISLLEQWYDEFDDFGSEK- 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---EEEEEESSHHHHHHHHHHHHHHSTTS-
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---ceeEecCHHHHHHHHHHHHHHhhhhh-
Confidence 5689999999999883 589999999999999999877666644 99999999999999999996644332
Q ss_pred EEEEeCC---------------------CCCCCCCcEEEEcHHHHHHHHhcccccc-----cCCCCCCceeEEEEccccc
Q 001047 231 VGLLTGD---------------------SAINREAQILIMTTEILRNMLYQSVGMV-----SSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 231 v~lltGd---------------------~~~~~~~~IlV~Tpe~L~~~L~~~~~~~-----~~~~~l~~v~lVIiDEaH~ 284 (1174)
....... ........+++.|...|........... .........++||+||||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~ 157 (184)
T PF04851_consen 78 YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHH 157 (184)
T ss_dssp EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGC
T ss_pred hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhh
Confidence 2111100 0123467899999999988765421100 0112345788999999999
Q ss_pred cccCCcHHH-HHHHHHHCCCCccEEEEccccC
Q 001047 285 LSDISRGTV-WEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 285 l~d~~~g~~-~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
+.. .. |..++. .+...+|+|||||.
T Consensus 158 ~~~----~~~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 158 YPS----DSSYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp THH----HHHHHHHHH--SSCCEEEEEESS-S
T ss_pred cCC----HHHHHHHHc--CCCCeEEEEEeCcc
Confidence 753 33 667666 45677999999985
No 130
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.56 E-value=1.4e-12 Score=168.61 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=96.3
Q ss_pred hhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEec
Q 001047 427 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 506 (1174)
Q Consensus 427 ~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~H 506 (1174)
..+.+.+..+.....++++||++|.+..+.++..|..... ..++..+.
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~--------------------------------~~~~~ll~ 785 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEE--------------------------------LEGYVLLA 785 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhccc--------------------------------ccCceEEe
Confidence 3455566666666667999999999999988888763211 00122222
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCc---eEEEeccccc-----------------CCC----Ccccc
Q 001047 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR---TAVLSSLSKR-----------------TAS----GRIQL 562 (1174)
Q Consensus 507 sgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v---~vVI~~~~k~-----------------~~~----~~~p~ 562 (1174)
=|+....|..+++.|+++.-.||++|..+.+|||+|+- .+||..++.- .++ +..|.
T Consensus 786 Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~ 865 (928)
T PRK08074 786 QGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQ 865 (928)
T ss_pred cCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHH
Confidence 24544568889999999888999999999999999984 3445443210 111 22344
Q ss_pred CHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhhCCC
Q 001047 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV 606 (1174)
Q Consensus 563 s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~~~~ 606 (1174)
....+.|-+||.-|... ..|.++++...... ..|-+.+....
T Consensus 866 A~~~lkQg~GRlIRs~~-D~G~v~ilD~R~~~-k~Yg~~~l~sL 907 (928)
T PRK08074 866 AVLRFKQGFGRLIRTET-DRGTVFVLDRRLTT-TSYGKYFLESL 907 (928)
T ss_pred HHHHHHhhhhhhcccCC-ceEEEEEecCcccc-chHHHHHHHhC
Confidence 56778999999999864 57876666655432 23555554443
No 131
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.55 E-value=8e-14 Score=139.04 Aligned_cols=134 Identities=31% Similarity=0.453 Sum_probs=104.1
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHHhC-CCeEEEEeCCCCC-------CCCC
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVA--NQRRIFYTTPLKALSNQKFREFRETFG-DNNVGLLTGDSAI-------NREA 244 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~--~g~rvlvl~PtraLa~Q~~~~l~~~~g-~~~v~lltGd~~~-------~~~~ 244 (1174)
+++++.+|||+|||.++..++..... ..++++|++|++.|+.|+...+...+. ...+..+.+.... ....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCCC
Confidence 46899999999999999998887765 457999999999999999999988765 4557777765432 3578
Q ss_pred cEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEcccc
Q 001047 245 QILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 245 ~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl 314 (1174)
+|+++|++.+...+... ......+++||+||+|.+....................+++++||||
T Consensus 81 ~i~i~t~~~~~~~~~~~------~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 81 DIVVGTPGRLLDELERL------KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CEEEECcHHHHHHHHcC------CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 99999999888766542 23355789999999999986554443322344456778999999996
No 132
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.54 E-value=1e-12 Score=153.97 Aligned_cols=378 Identities=17% Similarity=0.142 Sum_probs=214.0
Q ss_pred CCCCHHHHHHHHHHH----cCCcEEEEccCCcchHHHHHHHH--HHHHh-cCCeEEEEcccHHHHHHHHHHHHHHhCCCe
Q 001047 158 FRIDKFQRSSIEAFL----RGSSVVVSAPTSSGKTLIAEAAA--VATVA-NQRRIFYTTPLKALSNQKFREFRETFGDNN 230 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll----~g~~vlv~apTGsGKTlv~~~~i--l~~l~-~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~ 230 (1174)
-.+++||.+.++++. +|-+.|+.-..|-|||+..+..+ +.... -.+.-+|++|.-.|.| |.++|+++.++++
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~N-W~~Ef~rf~P~l~ 244 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDN-WMNEFKRFTPSLN 244 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHH-HHHHHHHhCCCcc
Confidence 468999999999865 56789999999999998754332 22222 2457899999777665 7789999889999
Q ss_pred EEEEeCCCC----------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHH
Q 001047 231 VGLLTGDSA----------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY 300 (1174)
Q Consensus 231 v~lltGd~~----------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~ 300 (1174)
+.++.|+.. .....+|+|+|+|+..+--. ...-..+.++||||||++-. -...+.++++.
T Consensus 245 ~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~--------~lk~~~W~ylvIDEaHRiKN--~~s~L~~~lr~ 314 (971)
T KOG0385|consen 245 VVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS--------FLKKFNWRYLVIDEAHRIKN--EKSKLSKILRE 314 (971)
T ss_pred eEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH--------HHhcCCceEEEechhhhhcc--hhhHHHHHHHH
Confidence 999999863 12378999999998765311 11123688999999999974 33444566666
Q ss_pred CCCCccEEEEccccC--------------------ChHHHHHHHhccc--Cceeee---cCCCCccccEEeeccc-cccc
Q 001047 301 CPKEVQIICLSATVA--------------------NADELAGWIGQIH--GKTELI---TSSRRPVPLTWYFSTK-TALL 354 (1174)
Q Consensus 301 l~~~~qiI~LSATl~--------------------n~~~~~~~l~~~~--~~~~~i---~~~~rpvpl~~~~~~~-~~~~ 354 (1174)
+.. ...+++|.||- .+++|..|+.... +.-.++ ..-.+|.-+...-... ..+.
T Consensus 315 f~~-~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLp 393 (971)
T KOG0385|consen 315 FKT-DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLP 393 (971)
T ss_pred hcc-cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCC
Confidence 653 34688999962 2367777876521 000000 0111111000000000 0000
Q ss_pred cccc----ccccccchhhhhhhhhcccccCCCccCCCc-ccccccc-----ccCCCCCcccccccccccchhhhhhhhh-
Q 001047 355 PLLD----EKGKHMNRKLSLNYLQLSTSEVKPYKDGGS-RRRNSRK-----HADMNSNNIVTSFGQHQLSKNSINAIRR- 423 (1174)
Q Consensus 355 ~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 423 (1174)
|... -....+..+.....+... ......... .+.+... +.--+..-.+......+.-...-.-+..
T Consensus 394 pKkE~~iyvgms~mQkk~Y~~iL~kd---l~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nS 470 (971)
T KOG0385|consen 394 PKKELIIYVGMSSMQKKWYKAILMKD---LDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNS 470 (971)
T ss_pred CcceeeEeccchHHHHHHHHHHHHhc---chhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcC
Confidence 0000 000000011100000000 000000000 0000000 0000000000000000000000000111
Q ss_pred cCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhcccee
Q 001047 424 SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVA 503 (1174)
Q Consensus 424 ~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~ 503 (1174)
...--+-++|..|.. .+.++|||..=.+.-+-+-.++.-.++ ...
T Consensus 471 GKm~vLDkLL~~Lk~-~GhRVLIFSQmt~mLDILeDyc~~R~y----------------------------------~yc 515 (971)
T KOG0385|consen 471 GKMLVLDKLLPKLKE-QGHRVLIFSQMTRMLDILEDYCMLRGY----------------------------------EYC 515 (971)
T ss_pred cceehHHHHHHHHHh-CCCeEEEeHHHHHHHHHHHHHHHhcCc----------------------------------eeE
Confidence 111122334444444 457999997655555555555543332 355
Q ss_pred EecCCCCHHHHHHHHHHHhcC---CceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCC
Q 001047 504 AHHAGCLPIWKSFIEELFQRG---LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580 (1174)
Q Consensus 504 ~~Hsgl~~~~R~~v~~~F~~G---~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d 580 (1174)
-+.|.++-++|...++.|... ..-.|++|-+.+.|||+-+.++||. |+..++|..=+|..-||.|.|+.
T Consensus 516 RiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIl--------yDSDWNPQ~DLQAmDRaHRIGQ~ 587 (971)
T KOG0385|consen 516 RLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVIL--------YDSDWNPQVDLQAMDRAHRIGQK 587 (971)
T ss_pred eecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEE--------ecCCCCchhhhHHHHHHHhhCCc
Confidence 678999999999999999873 4567899999999999999999999 66777777889999999999998
Q ss_pred CccEEEEEeCCCC
Q 001047 581 NRGHVVLVQTPYE 593 (1174)
Q Consensus 581 ~~G~~ill~~~~~ 593 (1174)
+.-+||-+++...
T Consensus 588 K~V~V~RLitent 600 (971)
T KOG0385|consen 588 KPVVVYRLITENT 600 (971)
T ss_pred CceEEEEEeccch
Confidence 8888887776643
No 133
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.53 E-value=2.2e-12 Score=152.16 Aligned_cols=376 Identities=16% Similarity=0.134 Sum_probs=212.4
Q ss_pred CCCHHHHHHHHHHH----cCCcEEEEccCCcchHHHHH--HHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHHhCCCeE
Q 001047 159 RIDKFQRSSIEAFL----RGSSVVVSAPTSSGKTLIAE--AAAVATV-ANQRRIFYTTPLKALSNQKFREFRETFGDNNV 231 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll----~g~~vlv~apTGsGKTlv~~--~~il~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v 231 (1174)
.+.+||+..+.++. ++.-.|+.-..|-|||...+ ++.+++- .--+.+|||||. .++.||.++|..+++...|
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~rv 283 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFRV 283 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceEE
Confidence 37889999999876 45678999999999996533 2333322 223689999995 7899999999999999999
Q ss_pred EEEeCCCCC--------------------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcH
Q 001047 232 GLLTGDSAI--------------------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRG 291 (1174)
Q Consensus 232 ~lltGd~~~--------------------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g 291 (1174)
.+++|..+. ..+..|+|+|++.++-+= ....-..++++|+||.|++-.. .
T Consensus 284 ~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~--------d~l~~~~W~y~ILDEGH~IrNp--n 353 (923)
T KOG0387|consen 284 FILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG--------DDLLGILWDYVILDEGHRIRNP--N 353 (923)
T ss_pred EEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC--------cccccccccEEEecCcccccCC--c
Confidence 888875541 135679999999877531 1112236889999999999743 3
Q ss_pred HHHHHHHHHCCCCccEEEEccccC--ChHHHHHHHhccc-C---ceeeecCCCCccccE--Eeeccc-------------
Q 001047 292 TVWEEIIIYCPKEVQIICLSATVA--NADELAGWIGQIH-G---KTELITSSRRPVPLT--WYFSTK------------- 350 (1174)
Q Consensus 292 ~~~e~ii~~l~~~~qiI~LSATl~--n~~~~~~~l~~~~-~---~~~~i~~~~rpvpl~--~~~~~~------------- 350 (1174)
..+...+..++ ..+.|.||.||- |..++-..+..+. | ...+|...+ .+|+. .+....
T Consensus 354 s~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f-~~pI~~GgyaNAs~~qv~~aykca~~ 431 (923)
T KOG0387|consen 354 SKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNF-EHPINRGGYANASPRQVQTAYKCAVA 431 (923)
T ss_pred cHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhh-hhheeccccCCCCHHHHHHHHHHHHH
Confidence 33444455554 567899999974 2344443333222 1 111221111 11111 000000
Q ss_pred --ccccccccc---------------------cccccchhhhhhhhhcccccCCCccCCCc-cccccccccCCCCCcccc
Q 001047 351 --TALLPLLDE---------------------KGKHMNRKLSLNYLQLSTSEVKPYKDGGS-RRRNSRKHADMNSNNIVT 406 (1174)
Q Consensus 351 --~~~~~~~~~---------------------~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 406 (1174)
..+.|++-. ..+...+.++..|+....... .+..... .......+.-=+..+...
T Consensus 432 Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~-i~ng~~~~l~Gi~iLrkICnHPdll~ 510 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNK-ILNGKRNCLSGIDILRKICNHPDLLD 510 (923)
T ss_pred HHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHH-HHcCCccceechHHHHhhcCCccccc
Confidence 000010000 000111222223332110000 0000000 000000000000000000
Q ss_pred cccccccchhhh-hhhhh-cCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhh-hcCCCCHHhHHHHHHHHHHHH
Q 001047 407 SFGQHQLSKNSI-NAIRR-SQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLE-DCNLLDECEMSEVELALKRFR 483 (1174)
Q Consensus 407 ~~~~~~l~~~~~-~~~~~-~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~-~~~~~~~~e~~~i~~~~~~~~ 483 (1174)
..........+. ..... .....+..++..... .+..+|+|..++...+.+-.+|. ..++
T Consensus 511 ~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~k-qg~rvllFsqs~~mLdilE~fL~~~~~y----------------- 572 (923)
T KOG0387|consen 511 RRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKK-QGDRVLLFSQSRQMLDILESFLRRAKGY----------------- 572 (923)
T ss_pred CcccccccCCCcCCChhhcchHHHHHHHHHHHhh-CCCEEEEehhHHHHHHHHHHHHHhcCCc-----------------
Confidence 000000000111 11111 112223334444443 44599999999998888877776 2333
Q ss_pred hhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCc--eEEEechhhhhcCCcCCceEEEecccccCCCCccc
Q 001047 484 ILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLV--KVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 561 (1174)
Q Consensus 484 ~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~i--kVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p 561 (1174)
...-+.|..+...|..+.+.|.++.. -.|++|-+.+.|+|+-..+-||. +++.
T Consensus 573 -----------------sylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII--------fDPd 627 (923)
T KOG0387|consen 573 -----------------SYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII--------FDPD 627 (923)
T ss_pred -----------------eEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEE--------ECCC
Confidence 34456778888999999999997654 36788999999999999888888 7788
Q ss_pred cCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 562 ~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
++|..=.|..-||-|.|+.+.-.+|-+.+.
T Consensus 628 WNPStD~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 628 WNPSTDNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred CCCccchHHHHHHHhhcCccceEEEEEecC
Confidence 888888999999999998766666655544
No 134
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=99.52 E-value=4.4e-14 Score=157.81 Aligned_cols=257 Identities=16% Similarity=0.211 Sum_probs=152.1
Q ss_pred HHHHHhhHHhhhccchhhHhHHHHHHHHHHHHHHHhhhchhhhhhHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001047 652 RKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRM 731 (1174)
Q Consensus 652 ~~ll~~sf~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 731 (1174)
+.||++||+|||..+.++..+.++.+++++++.+... + +.++.+|++|+.++....+... ..+
T Consensus 1 E~mikrSF~qfq~~~~lP~~~~~~~~~e~~~~~i~~~-------~-------~~~v~~y~~l~~~l~~~~~~~~---~~i 63 (268)
T PF13234_consen 1 EYMIKRSFSQFQNQRKLPELEKKLKELEEELDAIKIE-------D-------EEDVEEYYDLRQELEELRKELR---KII 63 (268)
T ss_dssp HHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHCS--T-------T-------CTCCHHHHHHHHHHHHHHHHHH---HHH
T ss_pred ChhHHHhHHHHcccccCHHHHHHHHHHHHHHHhcccc-------c-------HhHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 4789999999999998766666666666666655531 1 4688999999999998754443 221
Q ss_pred HHHHHHHHHhhhhhccCCCcceEEEeeecCCCcEeecceEEecccCCCch------hhhhcccccchhhhhhhhccCCCC
Q 001047 732 ELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDS------SKLKNMASINDSFALNRLAQSNGD 805 (1174)
Q Consensus 732 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1174)
..-+..+..|.+|++..+ ++. .....++|++......+. .......+.+++++.|.....+..
T Consensus 64 -----~~p~~~~~fL~~GRlV~v----~~~--~~~~~wgvvv~~~~~~~~~~~~~~~~~~~~~~vVdvL~~~~~~~~~~~ 132 (268)
T PF13234_consen 64 -----TSPKYCLPFLQPGRLVVV----RDG--DRDFGWGVVVNFAKKSNPKGNLGSSSSKEKSYVVDVLLPCSPDSKSAK 132 (268)
T ss_dssp -----CTCCCHHHHS-TTEEEEE----EET--TCEEEEEEEEEEEE---SS--TT-SSSTCCCEEEEEECCCEETTS-CC
T ss_pred -----hCcHHHHHhCCCCCEEEE----ecC--CCccceeEEEeccccccccccccccCCCCCcEEEEEEeeccccccccc
Confidence 111123444557776322 222 222344555432111100 112334677889888854433222
Q ss_pred CCC--CCCCCCccccccCCCCcee--eecccceeeEeecCCCCccccccCCCChhhhhhhhhhhhHHHHHhhhhhccCcc
Q 001047 806 DYD--TQDVKPSYYVALGSDNTWY--TFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLW 881 (1174)
Q Consensus 806 ~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (1174)
..+ +....|+. .+..+.+. +++..+|..|++..+.-+ .+..+.+.+.. .+..+ .++..+
T Consensus 133 ~~~~~~~~~~p~~---~~~~~~~~vv~v~l~~I~~ISs~rl~lp----~dl~~~~~r~~-------~~~~l--~el~~r- 195 (268)
T PF13234_consen 133 NSSDLPEPVKPCS---PGEKGEMEVVPVPLSCISSISSVRLKLP----KDLRPQEARKQ-------VLKSL--QELLKR- 195 (268)
T ss_dssp GTTTGGCTS-BS----TT--EEEEEEEEECCGEEEEEEEE--------TTTTSCCCHHH-------HHHHH--HHHHHH-
T ss_pred cccCCCCCCCCCC---CCCCCeEEEEEeeHHHHHHhhceeeeCc----ccccchHHHHH-------HHHHH--HHHHHh-
Confidence 111 12223321 22344444 778899999988543311 23334333322 22222 222222
Q ss_pred cccCcccccccccCCCCcccccchhhhhhhccccchhHHhHHHHHHHHHHHHHHHHhccCcchhhHHHHhhhhHHHHHHH
Q 001047 882 CMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKR 961 (1174)
Q Consensus 882 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 961 (1174)
++.++|.|||+.| |++. +..+.+..++++.|+++|..||||.|++ +++|+..++++..
T Consensus 196 ----------~~~giP~LDPi~D------mkI~----d~~~~e~~~k~~~Le~rl~~~~~~~~~~--~~~~~~~~~~k~~ 253 (268)
T PF13234_consen 196 ----------FPDGIPLLDPIKD------MKIK----DPEFVELVKKIEALEKRLSSHPLHKCPD--FEEHYALYHEKAE 253 (268)
T ss_dssp ----------SSS--TCHHCHHH------H--------HHHHHHHHHHHHHHHHHHHSCHCCSSS--HHHHHHHHHHHHH
T ss_pred ----------CCCCCCccChHHh------CCCC----cHHHHHHHHHHHHHHHHHHhCCCCCCcC--HHHHHHHHHHHHH
Confidence 3678999999875 8887 6778889999999999999999999987 6889999999999
Q ss_pred HHHHHHHHHHHHHh
Q 001047 962 LKARSKRLTKRIEQ 975 (1174)
Q Consensus 962 l~~~~~~l~~~i~~ 975 (1174)
|..+++.|+++|++
T Consensus 254 l~~~i~~Lk~~l~~ 267 (268)
T PF13234_consen 254 LQEEIKALKRQLSD 267 (268)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999976
No 135
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.50 E-value=1.2e-15 Score=183.79 Aligned_cols=192 Identities=30% Similarity=0.424 Sum_probs=152.9
Q ss_pred HhhcCCCCCCHHHHHHHHHHHc-CCcEEEEccCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHHh--
Q 001047 152 LASIYDFRIDKFQRSSIEAFLR-GSSVVVSAPTSSGKTLIAEAAAVATVA--NQRRIFYTTPLKALSNQKFREFRETF-- 226 (1174)
Q Consensus 152 l~~~~~~~~~~~Q~~ai~~ll~-g~~vlv~apTGsGKTlv~~~~il~~l~--~g~rvlvl~PtraLa~Q~~~~l~~~~-- 226 (1174)
+..+++ .+.|.|.+.+..+.. ..++++-+|||+|||++|.+++...+. .+.+++|++|.++|+..-..++...+
T Consensus 921 ~e~~~~-~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~ 999 (1230)
T KOG0952|consen 921 FEALYK-YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDEL 999 (1230)
T ss_pred HHHhhc-ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhccc
Confidence 344444 466677777766554 368999999999999999999998876 46799999999999999888888754
Q ss_pred CCCeEEEEeCCCCCC----CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHH--
Q 001047 227 GDNNVGLLTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY-- 300 (1174)
Q Consensus 227 g~~~v~lltGd~~~~----~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~-- 300 (1174)
++.++.-++|+...+ .+++|+|+||+..-.+... |.....+++++++|+||.|.+++ ++|++++.+...
T Consensus 1000 ~g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rs----w~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n 1074 (1230)
T KOG0952|consen 1000 PGIKVIELTGDVTPDVKAVREADIVITTPEKWDGISRS----WQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMN 1074 (1230)
T ss_pred CCceeEeccCccCCChhheecCceEEcccccccCcccc----ccchhhhccccceeecccccccC-CCcceEEEEeeccc
Confidence 446788888887655 4789999999988765542 34567788999999999999886 889988876543
Q ss_pred -----CCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccc
Q 001047 301 -----CPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKT 351 (1174)
Q Consensus 301 -----l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~ 351 (1174)
.++.++++++|--+.|+.++++|++.... ..+.+..||+|+..++....
T Consensus 1075 ~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~--~nf~~svrpvp~~~~i~gfp 1128 (1230)
T KOG0952|consen 1075 YISSQTEEPVRYLGLSTALANANDLADWLNIKDM--YNFRPSVRPVPLEVHIDGFP 1128 (1230)
T ss_pred cCccccCcchhhhhHhhhhhccHHHHHHhCCCCc--CCCCcccccCCceEeecCCC
Confidence 34568999999999999999999997554 56778899999999887644
No 136
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.49 E-value=6.6e-14 Score=125.65 Aligned_cols=73 Identities=30% Similarity=0.365 Sum_probs=69.7
Q ss_pred hccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCC
Q 001047 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRR 577 (1174)
Q Consensus 498 L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~ 577 (1174)
....+..+||++++.+|+.+++.|++|..+|||||+++++|||+|.+++||. ++.+.++.+|.|++||+||.
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~--------~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF--------YDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE--------SSSESSHHHHHHHHTTSSTT
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc--------cccCCCHHHHHHHhhcCCCC
Confidence 3457999999999999999999999999999999999999999999999999 88999999999999999998
Q ss_pred C
Q 001047 578 G 578 (1174)
Q Consensus 578 G 578 (1174)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 6
No 137
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.48 E-value=1.9e-13 Score=135.29 Aligned_cols=105 Identities=25% Similarity=0.374 Sum_probs=94.5
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
...++||||++...++.+++.|...+. ++.++||++++.+|..+..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~ 72 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGI----------------------------------KVAALHGDGSQEEREEVLK 72 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCC----------------------------------cEEEEECCCCHHHHHHHHH
Confidence 467999999999999999998864322 7899999999999999999
Q ss_pred HHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEE
Q 001047 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 588 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill 588 (1174)
.|.+|..+|||+|.++++|+|+|.+++||. .+.+.+..+|.|++||+||.| ..|.++++
T Consensus 73 ~f~~~~~~ili~t~~~~~G~d~~~~~~vi~--------~~~~~~~~~~~Q~~GR~~R~~--~~~~~~~~ 131 (131)
T cd00079 73 DFREGEIVVLVATDVIARGIDLPNVSVVIN--------YDLPWSPSSYLQRIGRAGRAG--QKGTAILL 131 (131)
T ss_pred HHHcCCCcEEEEcChhhcCcChhhCCEEEE--------eCCCCCHHHheecccccccCC--CCceEEeC
Confidence 999999999999999999999999999988 778999999999999999999 47777653
No 138
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.48 E-value=2.4e-12 Score=158.31 Aligned_cols=128 Identities=18% Similarity=0.158 Sum_probs=98.7
Q ss_pred hhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC--CCe
Q 001047 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG--DNN 230 (1174)
Q Consensus 153 ~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g--~~~ 230 (1174)
+...+..+.++|.-.--.+.. --|..+.||+|||+++.+|++.....|..|-+++|+--||.|-+..+...|. +++
T Consensus 76 ~R~lGm~~ydVQliGg~~Lh~--G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~ 153 (913)
T PRK13103 76 KRVMGMRHFDVQLIGGMTLHE--GKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLS 153 (913)
T ss_pred HHHhCCCcchhHHHhhhHhcc--CccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCE
Confidence 344556777888765555544 4578999999999999999998888999999999999999999999998765 368
Q ss_pred EEEEeCCCCCCC-----CCcEEEEcHHHH-----HHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 231 VGLLTGDSAINR-----EAQILIMTTEIL-----RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 231 v~lltGd~~~~~-----~~~IlV~Tpe~L-----~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
|++++++..... .++|+++|..-| ++.+... ........+.++||||+|.++
T Consensus 154 v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~----~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 154 VGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFS----LDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred EEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceec----hhhhcccccceeEechhhhee
Confidence 999988765432 589999999875 4332211 122345789999999999875
No 139
>COG4889 Predicted helicase [General function prediction only]
Probab=99.48 E-value=3.9e-13 Score=158.10 Aligned_cols=358 Identities=18% Similarity=0.203 Sum_probs=188.3
Q ss_pred CCCCCCHHHHHHHHHHHcC----CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC-CCe
Q 001047 156 YDFRIDKFQRSSIEAFLRG----SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG-DNN 230 (1174)
Q Consensus 156 ~~~~~~~~Q~~ai~~ll~g----~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g-~~~ 230 (1174)
-+.+|+|+|+.|+....+| ...=+.+..|+|||+..+-.. +.+.. .++|+++|..+|..|..+++...-. ++.
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkis-Eala~-~~iL~LvPSIsLLsQTlrew~~~~~l~~~ 235 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKIS-EALAA-ARILFLVPSISLLSQTLREWTAQKELDFR 235 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHH-HHHhh-hheEeecchHHHHHHHHHHHhhccCccce
Confidence 4557999999999998865 344566778999999886543 44433 7899999999999999999987321 122
Q ss_pred EEEEeCCCCCCC--------------------------------CCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEE
Q 001047 231 VGLLTGDSAINR--------------------------------EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIV 278 (1174)
Q Consensus 231 v~lltGd~~~~~--------------------------------~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVI 278 (1174)
...+++|....+ +--|+++|++.+...-.. ...-+..+++||
T Consensus 236 a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA------Qe~G~~~fDlii 309 (1518)
T COG4889 236 ASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA------QEAGLDEFDLII 309 (1518)
T ss_pred eEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH------HHcCCCCccEEE
Confidence 333334332211 234889999988765543 344578999999
Q ss_pred EccccccccCCcHHHHHHHHHHCC-----CCccEEEEccccCChHHHHHHHhccc--CceeeecCCCCc--cccEEeecc
Q 001047 279 LDEVHYLSDISRGTVWEEIIIYCP-----KEVQIICLSATVANADELAGWIGQIH--GKTELITSSRRP--VPLTWYFST 349 (1174)
Q Consensus 279 iDEaH~l~d~~~g~~~e~ii~~l~-----~~~qiI~LSATl~n~~~~~~~l~~~~--~~~~~i~~~~rp--vpl~~~~~~ 349 (1174)
.||||+-........=...+.++. +..+.+.||||+.- +.+-..... ....+...+... -|..+.+..
T Consensus 310 cDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPki---y~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~F 386 (1518)
T COG4889 310 CDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKI---YSESSKAKAKDHSAELSSMDDELTFGEEFHRLGF 386 (1518)
T ss_pred ecchhccccceecccCcccceeecCcchhHHHHhhhcccCchh---hchhhhhhhhhccceeeccchhhhhchhhhcccH
Confidence 999998653211100001111111 13457889999731 111111000 011111111100 000000000
Q ss_pred cccccccccccccccchhhhhhhhh--cccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCch
Q 001047 350 KTALLPLLDEKGKHMNRKLSLNYLQ--LSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVP 427 (1174)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 427 (1174)
+..+.+.+..+|-. +.... ...... ......... ..+...+ +.
T Consensus 387 -----------geAv~rdlLTDYKVmvlaVd~-~~i~~~--~~~~~~~~~-------------~~L~~dd--------~~ 431 (1518)
T COG4889 387 -----------GEAVERDLLTDYKVMVLAVDK-EVIAGV--LQSVLSGPS-------------KGLALDD--------VS 431 (1518)
T ss_pred -----------HHHHHhhhhccceEEEEEech-hhhhhh--hhhhccCcc-------------cccchhh--------hh
Confidence 00011111000000 00000 000000 000000000 0000000 00
Q ss_pred hHHHHHHHHHh---------------CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHH-HHHHhhCCccch
Q 001047 428 QVIDTLWHLRS---------------RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVR 491 (1174)
Q Consensus 428 ~~~~~l~~l~~---------------~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~-~~~~~~~~~~~~ 491 (1174)
.++.+-.-+.. .+..++|-||.+.+....++..+.. +.+.+ .++...+
T Consensus 432 kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~-----------Vve~Y~~Elk~d~----- 495 (1518)
T COG4889 432 KIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFET-----------VVEAYDEELKKDF----- 495 (1518)
T ss_pred hhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHH-----------HHHHHHHHHHhcC-----
Confidence 00000000110 1223567788888777777766531 11111 1222111
Q ss_pred hhHHhhhccceeEecCCCCHHHHHHHHHH---HhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHH
Q 001047 492 EPAIKGLLKGVAAHHAGCLPIWKSFIEEL---FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELF 568 (1174)
Q Consensus 492 ~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~---F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~ 568 (1174)
+.|...+....|.|...+|...+.+ |....++||-..-.|++|||+|+.+-||. +++-.+..+.+
T Consensus 496 ----~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF--------f~pr~smVDIV 563 (1518)
T COG4889 496 ----KNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF--------FDPRSSMVDIV 563 (1518)
T ss_pred ----CCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE--------ecCchhHHHHH
Confidence 2233344455578999999666654 46689999999999999999999999998 55667888999
Q ss_pred HhhcccCCCCC-CCccEEEE
Q 001047 569 QMAGRAGRRGI-DNRGHVVL 587 (1174)
Q Consensus 569 Qr~GRAGR~G~-d~~G~~il 587 (1174)
|-+||.-|... ...|++|+
T Consensus 564 QaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 564 QAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred HHHHHHHHhCcCCccceEEE
Confidence 99999999542 25688775
No 140
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.47 E-value=6.9e-13 Score=163.31 Aligned_cols=136 Identities=13% Similarity=0.049 Sum_probs=99.7
Q ss_pred EEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCC-----------CCCCCcEE
Q 001047 179 VSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSA-----------INREAQIL 247 (1174)
Q Consensus 179 v~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~-----------~~~~~~Il 247 (1174)
..+.+|||||.+|+-.+...+..|+.+||++|..+|+.|+.+.|++.||+..+..++++.+ .+..+.|+
T Consensus 165 ~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IV 244 (665)
T PRK14873 165 WQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVV 244 (665)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEE
Confidence 3344699999999999999999999999999999999999999999998556888888654 23468999
Q ss_pred EEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc---cCCcHHHHHHHHH--HCCCCccEEEEccccCChHHHHH
Q 001047 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS---DISRGTVWEEIII--YCPKEVQIICLSATVANADELAG 322 (1174)
Q Consensus 248 V~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~---d~~~g~~~e~ii~--~l~~~~qiI~LSATl~n~~~~~~ 322 (1174)
|+|-..+ ...+.++++|||||-|.-+ +.........+.. ....++.+|+.|||++ +..
T Consensus 245 iGtRSAv-------------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS----les 307 (665)
T PRK14873 245 VGTRSAV-------------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART----AEA 307 (665)
T ss_pred EEcceeE-------------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC----HHH
Confidence 9996533 2357799999999999654 2222222333322 2234788999999986 444
Q ss_pred HHhcccCce
Q 001047 323 WIGQIHGKT 331 (1174)
Q Consensus 323 ~l~~~~~~~ 331 (1174)
|.....|..
T Consensus 308 ~~~~~~g~~ 316 (665)
T PRK14873 308 QALVESGWA 316 (665)
T ss_pred HHHHhcCcc
Confidence 444334433
No 141
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.45 E-value=3.2e-12 Score=143.17 Aligned_cols=380 Identities=17% Similarity=0.162 Sum_probs=212.3
Q ss_pred CCCHHHHHHHHH-HHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCC-eEEEEeC
Q 001047 159 RIDKFQRSSIEA-FLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDN-NVGLLTG 236 (1174)
Q Consensus 159 ~~~~~Q~~ai~~-ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~-~v~lltG 236 (1174)
.+-|||.+.+.. +.+|..+++.-..|-|||+.++.. ........-.+|++|- +|-.-|.+.+..+++.. .+.++.+
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaI-A~yyraEwplliVcPA-svrftWa~al~r~lps~~pi~vv~~ 275 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALAI-ARYYRAEWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFVVDK 275 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHH-HHHHhhcCcEEEEecH-HHhHHHHHHHHHhcccccceEEEec
Confidence 366899999886 557789999999999999998644 4444455568899995 67778899999988754 3444444
Q ss_pred CCCCC----CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEcc
Q 001047 237 DSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 312 (1174)
Q Consensus 237 d~~~~----~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSA 312 (1174)
....- ....|.|++++.+..+-.. ..-..+++||+||.|++-+. .......++-.+..-.++|+||.
T Consensus 276 ~~D~~~~~~t~~~v~ivSye~ls~l~~~--------l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk~akhvILLSG 346 (689)
T KOG1000|consen 276 SSDPLPDVCTSNTVAIVSYEQLSLLHDI--------LKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLKVAKHVILLSG 346 (689)
T ss_pred ccCCccccccCCeEEEEEHHHHHHHHHH--------HhcccceEEEEechhhhhcc-chhhhhhhhhHHHHhhheEEecC
Confidence 33322 3467999999987643211 11235899999999999763 22223333334444567999999
Q ss_pred ccC--ChHHHHHHHhcccCc-------eeeecCCCCccccEEeeccccccccccc-ccccccchhhhhhhhh-cccccC-
Q 001047 313 TVA--NADELAGWIGQIHGK-------TELITSSRRPVPLTWYFSTKTALLPLLD-EKGKHMNRKLSLNYLQ-LSTSEV- 380 (1174)
Q Consensus 313 Tl~--n~~~~~~~l~~~~~~-------~~~i~~~~rpvpl~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~-~~~~~~- 380 (1174)
|+. .+.++-..+..+... ...-+.+.+.++..+-+....++..+-- -....|-+.+..+.+. +.+...
T Consensus 347 TPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~ 426 (689)
T KOG1000|consen 347 TPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRRE 426 (689)
T ss_pred CcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceE
Confidence 985 344333333222110 0112234455555544544332221100 0000111122111110 000000
Q ss_pred CCccCCCcccccccc-ccCCCCCcccccccccccch-hhhhhhhhcCchhHHHHHHH---HHhCCCCCeEEEecCHHHHH
Q 001047 381 KPYKDGGSRRRNSRK-HADMNSNNIVTSFGQHQLSK-NSINAIRRSQVPQVIDTLWH---LRSRDMLPAIWFIFNRRGCD 455 (1174)
Q Consensus 381 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~---l~~~~~~~~IVF~~sr~~~~ 455 (1174)
-.|.....-...... ......+...........+- ...........+.+.+.|.. +...+..+.+||+....--+
T Consensus 427 Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd 506 (689)
T KOG1000|consen 427 VVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLD 506 (689)
T ss_pred EEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHH
Confidence 000000000000000 00000000000000000000 00000111233444455544 34456678999998887777
Q ss_pred HHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcC-CceE-EEech
Q 001047 456 AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRG-LVKV-VFATE 533 (1174)
Q Consensus 456 ~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G-~ikV-LVAT~ 533 (1174)
.+..++.+.++ |..-+.|..++..|+..-+.|+.. +++| +++-.
T Consensus 507 ~Iq~~~~~r~v----------------------------------g~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsIt 552 (689)
T KOG1000|consen 507 TIQVEVNKRKV----------------------------------GSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSIT 552 (689)
T ss_pred HHHHHHHHcCC----------------------------------CeEEecCCCCchhHHHHHHHhccccceEEEEEEEe
Confidence 77766664443 445567899999999999999973 4444 44556
Q ss_pred hhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 534 TLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 534 tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
.++.|+++.+..+|+. ...+++++-.+|.--||.|.|+...-.+++++..
T Consensus 553 A~gvGLt~tAa~~VVF--------aEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAK 602 (689)
T KOG1000|consen 553 AAGVGLTLTAASVVVF--------AELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAK 602 (689)
T ss_pred ecccceeeeccceEEE--------EEecCCCceEEechhhhhhccccceeeEEEEEec
Confidence 6789999999988887 5677888889999999999997665555555544
No 142
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.45 E-value=4.6e-13 Score=158.35 Aligned_cols=368 Identities=16% Similarity=0.201 Sum_probs=222.8
Q ss_pred HHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCC-----eEEEEcccHHHHHHHHHHHHH----HhCCCeEE
Q 001047 162 KFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR-----RIFYTTPLKALSNQKFREFRE----TFGDNNVG 232 (1174)
Q Consensus 162 ~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~-----rvlvl~PtraLa~Q~~~~l~~----~~g~~~v~ 232 (1174)
.+-...+.++..++.++|-+.||+|||..+...|++.+..+. .+.+..|++.-+.-+++++.. ..|+..+.
T Consensus 381 ~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy 460 (1282)
T KOG0921|consen 381 QYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGY 460 (1282)
T ss_pred HHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccc
Confidence 344556666677788999999999999999999998876533 677888999777666666654 34443333
Q ss_pred EEeCCCCCC-CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc-cCCcHHHHHHHHHHCCCCccEEEE
Q 001047 233 LLTGDSAIN-REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS-DISRGTVWEEIIIYCPKEVQIICL 310 (1174)
Q Consensus 233 lltGd~~~~-~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~-d~~~g~~~e~ii~~l~~~~qiI~L 310 (1174)
-..-++... +...|+.||-+.+.+++++ -+..+.++|+||.|... +..|-.+++.-++-..++.++++|
T Consensus 461 ~vRf~Sa~prpyg~i~fctvgvllr~~e~---------glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lm 531 (1282)
T KOG0921|consen 461 NVRFDSATPRPYGSIMFCTVGVLLRMMEN---------GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLM 531 (1282)
T ss_pred cccccccccccccceeeeccchhhhhhhh---------cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhh
Confidence 333333332 3567999999999999986 36789999999999865 224444444444555668899999
Q ss_pred ccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccc-cccccccccccchhhhhhhhhcccccCCCccCCCcc
Q 001047 311 SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTAL-LPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389 (1174)
Q Consensus 311 SATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 389 (1174)
|||+ |.+-|..++.. +..+....|.+|.+.++...... ...+........++.... .....+.
T Consensus 532 satI-dTd~f~~~f~~----~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~-------~~~~~~d---- 595 (1282)
T KOG0921|consen 532 SATI-DTDLFTNFFSS----IPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDD-------EEDEEVD---- 595 (1282)
T ss_pred hccc-chhhhhhhhcc----ccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhccc-------ccCchhh----
Confidence 9999 78888888875 55556667777776554322100 000000000000000000 0000000
Q ss_pred ccccccccCCCCCcccccccccccchhhhhhhhh-cCchhHHHHHH-HHHhC-CCCCeEEEecCHHHHHHHHHHhhhcCC
Q 001047 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR-SQVPQVIDTLW-HLRSR-DMLPAIWFIFNRRGCDAAVQYLEDCNL 466 (1174)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~l~-~l~~~-~~~~~IVF~~sr~~~~~la~~L~~~~~ 466 (1174)
.+.+ + .+.................+.. ...-.+.+.+. .+... -.+.++||.+.-...-.+...|.....
T Consensus 596 -dK~~---n---~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~ 668 (1282)
T KOG0921|consen 596 -DKGR---N---MNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQE 668 (1282)
T ss_pred -hccc---c---cccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhh
Confidence 0000 0 0000000000000000000000 01111222222 22222 234578888887766666655543221
Q ss_pred CCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceE
Q 001047 467 LDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 546 (1174)
Q Consensus 467 ~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~v 546 (1174)
.- ..-...+...|+.+...++.+|.+....|..++|++|.++...+.+.++..
T Consensus 669 fg---------------------------~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~ 721 (1282)
T KOG0921|consen 669 FG---------------------------QANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVY 721 (1282)
T ss_pred hc---------------------------cchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeE
Confidence 00 111235778899999999999999999999999999999999999999888
Q ss_pred EEeccccc-------CC---CCccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 547 VLSSLSKR-------TA---SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 547 VI~~~~k~-------~~---~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
||.+..-+ +. ....|.|.....||.||+||. ..|.|+.+++.
T Consensus 722 vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv---R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 722 VIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV---RPGFCFHLCSR 773 (1282)
T ss_pred EEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee---cccccccccHH
Confidence 88754321 00 035788999999999999998 68999988754
No 143
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.38 E-value=1.5e-10 Score=140.95 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=50.4
Q ss_pred HHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHH
Q 001047 167 SIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA--NQRRIFYTTPLKALSNQKFREFRET 225 (1174)
Q Consensus 167 ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~--~g~rvlvl~PtraLa~Q~~~~l~~~ 225 (1174)
+..++.+++.+++.||||+|||++|++|++..+. .+.++||++||++|+.|+++++...
T Consensus 9 i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l 69 (636)
T TIGR03117 9 CLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERL 69 (636)
T ss_pred HHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHH
Confidence 3345567789999999999999999999987765 4789999999999999999887654
No 144
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=5.9e-11 Score=144.54 Aligned_cols=129 Identities=19% Similarity=0.174 Sum_probs=92.9
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH---HHhC
Q 001047 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFR---ETFG 227 (1174)
Q Consensus 151 ~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~---~~~g 227 (1174)
......+..|++.|.-.--.+..|+ |..+.||=|||+++.+|++-....|+.|-|++..--||..=+..+. +++|
T Consensus 70 A~~R~lG~r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLG 147 (925)
T PRK12903 70 ATKRVLGKRPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLG 147 (925)
T ss_pred HHHHHhCCCcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHHhC
Confidence 3455667788889987776666664 7999999999999999998777778888888888899986554444 4455
Q ss_pred CCeEEEEeCCCCCC-----CCCcEEEEcHHH-----HHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 228 DNNVGLLTGDSAIN-----REAQILIMTTEI-----LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 228 ~~~v~lltGd~~~~-----~~~~IlV~Tpe~-----L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
++||++..+.... -.++|+++|..- |++.+... ......+.+.+.||||||.++
T Consensus 148 -LsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~----~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 148 -LSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSS----KEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred -CceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhccccc----HHHhcCcccceeeeccchhee
Confidence 6788887665432 268999999875 33332211 122335678899999999775
No 145
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.33 E-value=1.3e-10 Score=141.41 Aligned_cols=145 Identities=19% Similarity=0.199 Sum_probs=102.7
Q ss_pred CCCHHHHHHHHHHHcC----------CcEEEEccCCcchHHHHHHHHHHHHhc--C-----CeEEEEcccHHHHHHHHHH
Q 001047 159 RIDKFQRSSIEAFLRG----------SSVVVSAPTSSGKTLIAEAAAVATVAN--Q-----RRIFYTTPLKALSNQKFRE 221 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g----------~~vlv~apTGsGKTlv~~~~il~~l~~--g-----~rvlvl~PtraLa~Q~~~~ 221 (1174)
.++|+|++.+.-+..+ .-+|++-..|+|||+..+..+...+.+ + .+.|||+| ..|++-|+++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc-HHHHHHHHHH
Confidence 4899999999887532 246777888999999877666655553 4 58999999 6999999999
Q ss_pred HHHHhCC--CeEEEEeCCCCC--------------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccc
Q 001047 222 FRETFGD--NNVGLLTGDSAI--------------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285 (1174)
Q Consensus 222 l~~~~g~--~~v~lltGd~~~--------------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l 285 (1174)
|.++.+. +..-.+.|.... .-...|++-+++.++.... ......++++|+||.|.+
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--------~il~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--------KILLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--------HHhcCCCCeEEECCCCCc
Confidence 9999884 333344444331 1145688899998875543 234568999999999998
Q ss_pred ccCCcHHHHHHHHHHCCCCccEEEEccccC
Q 001047 286 SDISRGTVWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 286 ~d~~~g~~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
-. .....| ..+..+. ..+.|+||.|+-
T Consensus 389 kN-~~s~~~-kaL~~l~-t~rRVLLSGTp~ 415 (776)
T KOG0390|consen 389 KN-SDSLTL-KALSSLK-TPRRVLLTGTPI 415 (776)
T ss_pred cc-hhhHHH-HHHHhcC-CCceEEeeCCcc
Confidence 63 223333 3444443 456799999984
No 146
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.30 E-value=1.4e-10 Score=143.77 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHc--------CCcEEEEccCCcchHHHHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHHhC
Q 001047 159 RIDKFQRSSIEAFLR--------GSSVVVSAPTSSGKTLIAEAAAVATVA---NQRRIFYTTPLKALSNQKFREFRETFG 227 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~--------g~~vlv~apTGsGKTlv~~~~il~~l~---~g~rvlvl~PtraLa~Q~~~~l~~~~g 227 (1174)
+-..+|-+|+..+.. |--+|-.|.||||||++=.-.+ ..+. .|.|..|..-.|.|.-|.-..+++.++
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARIm-yaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~ 486 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAM-YALRDDKQGARFAIALGLRSLTLQTGHALKTRLN 486 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHH-HHhCCCCCCceEEEEccccceeccchHHHHHhcC
Confidence 345699999988763 2235668999999998754433 3333 355899999999999999998888764
Q ss_pred --CCeEEEEeCCCC-----------------------------------------C-----------CC------CCcEE
Q 001047 228 --DNNVGLLTGDSA-----------------------------------------I-----------NR------EAQIL 247 (1174)
Q Consensus 228 --~~~v~lltGd~~-----------------------------------------~-----------~~------~~~Il 247 (1174)
+....++.|+.. . ++ .++|+
T Consensus 487 L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~ 566 (1110)
T TIGR02562 487 LSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVL 566 (1110)
T ss_pred CCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeE
Confidence 223444444221 0 00 25799
Q ss_pred EEcHHHHHHHHhccc--ccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC-CCCccEEEEccccCC
Q 001047 248 IMTTEILRNMLYQSV--GMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC-PKEVQIICLSATVAN 316 (1174)
Q Consensus 248 V~Tpe~L~~~L~~~~--~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l-~~~~qiI~LSATl~n 316 (1174)
|||+..++....... ........+ .-+.|||||+|-+....+ ..+..++..+ .-+.++++||||+|.
T Consensus 567 V~TIDQlL~a~~~~r~~~~~l~ll~L-a~svlVlDEVHaYD~~~~-~~L~rlL~w~~~lG~~VlLmSATLP~ 636 (1110)
T TIGR02562 567 VCTIDHLIPATESHRGGHHIAPMLRL-MSSDLILDEPDDYEPEDL-PALLRLVQLAGLLGSRVLLSSATLPP 636 (1110)
T ss_pred EecHHHHHHHhhhcccchhHHHHHHh-cCCCEEEECCccCCHHHH-HHHHHHHHHHHHcCCCEEEEeCCCCH
Confidence 999998876652211 100000001 236799999999764333 3344444322 235789999999985
No 147
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.29 E-value=1.4e-11 Score=120.02 Aligned_cols=130 Identities=20% Similarity=0.325 Sum_probs=83.1
Q ss_pred cCCcEEEEccCCcchHHHH-HHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCC--CCCCCCCcEEEE
Q 001047 173 RGSSVVVSAPTSSGKTLIA-EAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGD--SAINREAQILIM 249 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~-~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd--~~~~~~~~IlV~ 249 (1174)
+|+-.++-.++|+|||.-. .-.+.+.+.++.|+|++.|||.++..+++.++. ..+...+.- .....+..|-||
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~----~~~~~~t~~~~~~~~g~~~i~vM 78 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKG----LPVRFHTNARMRTHFGSSIIDVM 78 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTT----SSEEEESTTSS----SSSSEEEE
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhc----CCcccCceeeeccccCCCccccc
Confidence 4556789999999999854 344567888999999999999999998888765 233333221 133467789999
Q ss_pred cHHHHHHHHhcccccccCCCCCCceeEEEEccccccccC---CcHHHHHHHHHHCCCCccEEEEccccCC
Q 001047 250 TTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI---SRGTVWEEIIIYCPKEVQIICLSATVAN 316 (1174)
Q Consensus 250 Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~---~~g~~~e~ii~~l~~~~qiI~LSATl~n 316 (1174)
|...+...+.+ ...+.++++||+||||..... .+| .+... .. ...+.+|+||||+|.
T Consensus 79 c~at~~~~~~~-------p~~~~~yd~II~DEcH~~Dp~sIA~rg-~l~~~-~~-~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 79 CHATYGHFLLN-------PCRLKNYDVIIMDECHFTDPTSIAARG-YLREL-AE-SGEAKVIFMTATPPG 138 (148)
T ss_dssp EHHHHHHHHHT-------SSCTTS-SEEEECTTT--SHHHHHHHH-HHHHH-HH-TTS-EEEEEESS-TT
T ss_pred ccHHHHHHhcC-------cccccCccEEEEeccccCCHHHHhhhe-eHHHh-hh-ccCeeEEEEeCCCCC
Confidence 99998887764 344679999999999996422 122 11111 11 224689999999984
No 148
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.27 E-value=1.4e-09 Score=136.91 Aligned_cols=64 Identities=28% Similarity=0.269 Sum_probs=52.9
Q ss_pred CCCCCCHHHHHHHHHHH---c------CCcEEEEccCCcchHHHHHHHHHHH-HhcCCeEEEEcccHHHHHHHH
Q 001047 156 YDFRIDKFQRSSIEAFL---R------GSSVVVSAPTSSGKTLIAEAAAVAT-VANQRRIFYTTPLKALSNQKF 219 (1174)
Q Consensus 156 ~~~~~~~~Q~~ai~~ll---~------g~~vlv~apTGsGKTlv~~~~il~~-l~~g~rvlvl~PtraLa~Q~~ 219 (1174)
-+|.+++-|.+-+..+. . ++.++|-||||+|||++|++|++.. ...++++||-+.|++|-+|..
T Consensus 22 ~~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 22 PGFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLV 95 (697)
T ss_pred CCCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 35899999999555443 3 3678899999999999999998754 447899999999999999985
No 149
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.27 E-value=1.4e-10 Score=142.83 Aligned_cols=377 Identities=17% Similarity=0.134 Sum_probs=214.5
Q ss_pred CCCHHHHHHHHHHH----cCCcEEEEccCCcchHHH---HHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeE
Q 001047 159 RIDKFQRSSIEAFL----RGSSVVVSAPTSSGKTLI---AEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNV 231 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll----~g~~vlv~apTGsGKTlv---~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v 231 (1174)
.++.||.+.+++++ .++++|+.-..|-|||+. |+..+++...-.+-.||++|.-.+. -|.++|..+. +.++
T Consensus 370 ~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~-~W~~ef~~w~-~mn~ 447 (1373)
T KOG0384|consen 370 ELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTIT-AWEREFETWT-DMNV 447 (1373)
T ss_pred hhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhH-HHHHHHHHHh-hhce
Confidence 58899999999876 678999999999999965 4444555554456689999986554 4678888866 6778
Q ss_pred EEEeCCCCC-----------CC-----CCcEEEEcHHHHHHHHhcccccccCCCCCC--ceeEEEEccccccccCCcHHH
Q 001047 232 GLLTGDSAI-----------NR-----EAQILIMTTEILRNMLYQSVGMVSSESGLF--DVDVIVLDEVHYLSDISRGTV 293 (1174)
Q Consensus 232 ~lltGd~~~-----------~~-----~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~--~v~lVIiDEaH~l~d~~~g~~ 293 (1174)
..++|+... +. ..+++++|.++++. ....|. ...+++|||||+|-. ....
T Consensus 448 i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~Lk----------Dk~~L~~i~w~~~~vDeahrLkN--~~~~ 515 (1373)
T KOG0384|consen 448 IVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLK----------DKAELSKIPWRYLLVDEAHRLKN--DESK 515 (1373)
T ss_pred eeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhc----------cHhhhccCCcceeeecHHhhcCc--hHHH
Confidence 888887531 12 47899999998754 122333 467899999999963 3333
Q ss_pred HHHHHHHCCCCccEEEEccccC--ChHHHHHHHhcccCceeeecCCCCccccEEe-eccc-------cccccccc-----
Q 001047 294 WEEIIIYCPKEVQIICLSATVA--NADELAGWIGQIHGKTELITSSRRPVPLTWY-FSTK-------TALLPLLD----- 358 (1174)
Q Consensus 294 ~e~ii~~l~~~~qiI~LSATl~--n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~-~~~~-------~~~~~~~~----- 358 (1174)
+...+..+. --..+++|.||- |.+++...++...+.-+-....+ +..+ .... ..+.|++-
T Consensus 516 l~~~l~~f~-~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f----~~~~~~~~e~~~~~L~~~L~P~~lRr~kk 590 (1373)
T KOG0384|consen 516 LYESLNQFK-MNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEF----LEEFDEETEEQVRKLQQILKPFLLRRLKK 590 (1373)
T ss_pred HHHHHHHhc-ccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHH----HHhhcchhHHHHHHHHHHhhHHHHHHHHh
Confidence 333444443 234688999985 35777766654332100000000 0000 0000 00000000
Q ss_pred ccccccchhhhhhhh--hcccccCCCccCCCcc-ccccccccCCCCCccccc--------cccccc--------------
Q 001047 359 EKGKHMNRKLSLNYL--QLSTSEVKPYKDGGSR-RRNSRKHADMNSNNIVTS--------FGQHQL-------------- 413 (1174)
Q Consensus 359 ~~~~~~~~~l~~~~l--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~l-------------- 413 (1174)
+....++.+. -..+ ..+.-...+|+.--.+ -....++......+.+.. .....+
T Consensus 591 dvekslp~k~-E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~ 669 (1373)
T KOG0384|consen 591 DVEKSLPPKE-ETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDK 669 (1373)
T ss_pred hhccCCCCCc-ceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhc
Confidence 0000000000 0000 0000000000000000 000001100000110000 000000
Q ss_pred -chhhhhhh-hhcC-chhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccc
Q 001047 414 -SKNSINAI-RRSQ-VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV 490 (1174)
Q Consensus 414 -~~~~~~~~-~~~~-~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~ 490 (1174)
....+..+ ..+. .-.+-++|..|. .++.++|||..=.+.-+-++++|...++
T Consensus 670 ~~d~~L~~lI~sSGKlVLLDKLL~rLk-~~GHrVLIFSQMVRmLDIL~eYL~~r~y------------------------ 724 (1373)
T KOG0384|consen 670 MRDEALQALIQSSGKLVLLDKLLPRLK-EGGHRVLIFSQMVRMLDILAEYLSLRGY------------------------ 724 (1373)
T ss_pred chHHHHHHHHHhcCcEEeHHHHHHHHh-cCCceEEEhHHHHHHHHHHHHHHHHcCC------------------------
Confidence 00011111 1111 111222333333 3567999999888888889999986665
Q ss_pred hhhHHhhhccceeEecCCCCHHHHHHHHHHHhc---CCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHH
Q 001047 491 REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR---GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNEL 567 (1174)
Q Consensus 491 ~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~---G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y 567 (1174)
...-+-|++.-+.|+..+..|.. ...-.|+||-+.+.|||+-+.+.||. ++..++|..=
T Consensus 725 ----------pfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII--------FDSDWNPQND 786 (1373)
T KOG0384|consen 725 ----------PFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII--------FDSDWNPQND 786 (1373)
T ss_pred ----------cceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE--------eCCCCCcchH
Confidence 23446789999999999999986 45678999999999999999888888 6666778888
Q ss_pred HHhhcccCCCCCCCccEEEEEeCCCCCHHHH
Q 001047 568 FQMAGRAGRRGIDNRGHVVLVQTPYEGAEEC 598 (1174)
Q Consensus 568 ~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~ 598 (1174)
+|.--||.|.|+...-.+|-+++...--+++
T Consensus 787 LQAqARaHRIGQkk~VnVYRLVTk~TvEeEi 817 (1373)
T KOG0384|consen 787 LQAQARAHRIGQKKHVNVYRLVTKNTVEEEI 817 (1373)
T ss_pred HHHHHHHHhhcccceEEEEEEecCCchHHHH
Confidence 9999999999998889999887775433333
No 150
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.27 E-value=7e-10 Score=140.48 Aligned_cols=72 Identities=29% Similarity=0.332 Sum_probs=58.8
Q ss_pred hhcCCCCCCHHHHHHHHHHH----cCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHH
Q 001047 153 ASIYDFRIDKFQRSSIEAFL----RGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 153 ~~~~~~~~~~~Q~~ai~~ll----~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
...-++.+++.|.+.+..+. +++.+++.||||+|||+.|+.|++.... .+.+++|.++|+.|-.|..++...
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcc
Confidence 33456789999999886543 4566999999999999999999887654 468999999999999998876554
No 151
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.26 E-value=1.5e-11 Score=110.89 Aligned_cols=72 Identities=31% Similarity=0.394 Sum_probs=67.8
Q ss_pred ccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCC
Q 001047 499 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578 (1174)
Q Consensus 499 ~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G 578 (1174)
...+..+||++++.+|..++..|++|..+|||+|+++++|+|+|.++.||. ++.+.+...|.|++||++|.|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~--------~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII--------YDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE--------eCCCCCHHHHHHhhcccccCC
Confidence 347899999999999999999999999999999999999999999999998 778999999999999999986
No 152
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.24 E-value=6.1e-10 Score=136.83 Aligned_cols=129 Identities=19% Similarity=0.173 Sum_probs=95.3
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHH---hC
Q 001047 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRET---FG 227 (1174)
Q Consensus 151 ~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~---~g 227 (1174)
......+..|++.|.-+.-.+ .+.-|+.+.||.|||+++.+|+.-....|..|-|++++..||.+-++.+... +|
T Consensus 68 a~~R~lG~r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 68 ASFRTLGLRHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred HHHHHhCCCCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 345566677888886655444 3567899999999999999999766667999999999999999877777654 45
Q ss_pred CCeEEEEeCCCCCCC-----CCcEEEEcHH-----HHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 228 DNNVGLLTGDSAINR-----EAQILIMTTE-----ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 228 ~~~v~lltGd~~~~~-----~~~IlV~Tpe-----~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
++||++.++.+... .++|+++|.. -|++.+.... .....+.+.+.||||||.++
T Consensus 146 -Lsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~----~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 146 -LTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSL----SDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred -CceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcCh----HHhhccccceeeeecchhhe
Confidence 67888877665332 5799999996 4555443211 12235678899999999775
No 153
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.24 E-value=2.9e-09 Score=119.54 Aligned_cols=153 Identities=20% Similarity=0.250 Sum_probs=103.7
Q ss_pred CCCCHHHHHHHHHHHcCC-----cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHh-CCCeE
Q 001047 158 FRIDKFQRSSIEAFLRGS-----SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETF-GDNNV 231 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g~-----~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~-g~~~v 231 (1174)
.++-|||.+.+.++.... -.|+....|.|||...+..++..+ .+..+||++|+.||+ ||..++...- |..++
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~-~ra~tLVvaP~VAlm-QW~nEI~~~T~gslkv 260 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV-DRAPTLVVAPTVALM-QWKNEIERHTSGSLKV 260 (791)
T ss_pred ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc-ccCCeeEEccHHHHH-HHHHHHHHhccCceEE
Confidence 357899999998876542 358889999999998876665543 355699999999987 6677776633 55688
Q ss_pred EEEeCCCCCC-----CCCcEEEEcHHHHHHHHhcc-cc------cccCCCCCCce--eEEEEccccccccCCcHHHHHHH
Q 001047 232 GLLTGDSAIN-----REAQILIMTTEILRNMLYQS-VG------MVSSESGLFDV--DVIVLDEVHYLSDISRGTVWEEI 297 (1174)
Q Consensus 232 ~lltGd~~~~-----~~~~IlV~Tpe~L~~~L~~~-~~------~~~~~~~l~~v--~lVIiDEaH~l~d~~~g~~~e~i 297 (1174)
.+++|..... .+.+++.+|+.++-+...+. .+ ..+....|.++ -.||+||||.+-+..-.. ...
T Consensus 261 ~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snT--ArA 338 (791)
T KOG1002|consen 261 YIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNT--ARA 338 (791)
T ss_pred EEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccH--HHH
Confidence 9999865422 37899999999888766542 22 22233344444 459999999998642221 111
Q ss_pred HHHCCCCccEEEEccccC
Q 001047 298 IIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 298 i~~l~~~~qiI~LSATl~ 315 (1174)
+-.+. .....+||.|+-
T Consensus 339 V~~L~-tt~rw~LSGTPL 355 (791)
T KOG1002|consen 339 VFALE-TTYRWCLSGTPL 355 (791)
T ss_pred HHhhH-hhhhhhccCCcc
Confidence 11221 234689999974
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=7.2e-09 Score=131.48 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=61.1
Q ss_pred hcCCCCC-CHHHHHHHHHH----HcCCcEEEEccCCcchHHHHHHHHHHHHh-cC--CeEEEEcccHHHHHHHHHHHHH
Q 001047 154 SIYDFRI-DKFQRSSIEAF----LRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQ--RRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 154 ~~~~~~~-~~~Q~~ai~~l----l~g~~vlv~apTGsGKTlv~~~~il~~l~-~g--~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
-.|||++ +|.|.+.+..+ ..++++++.+|||+|||++.+.+++.... .+ .+++|.+.|.+=..|..+++++
T Consensus 4 v~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 4 VYFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred eecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 4578886 99999887664 46789999999999999999999988765 34 6999999999999999999988
No 155
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.16 E-value=4.2e-09 Score=129.21 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=97.4
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH---HhC
Q 001047 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE---TFG 227 (1174)
Q Consensus 151 ~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~---~~g 227 (1174)
......+..|.++|.-.--.+.. --|..+.||-|||+++.+|++.....|+.|-|+++.--||.+=++.+.. ++|
T Consensus 77 a~~R~lG~r~ydVQliGgl~Lh~--G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 77 ASKRVLGMRHFDVQLIGGMVLHE--GQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred HHHHHhCCCcchhHHHhhhhhcC--CceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 34455667788888766555544 4588999999999999999988888899999999999999986666655 445
Q ss_pred CCeEEEEeCCCCCC-----CCCcEEEEcHHHH-----HHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 228 DNNVGLLTGDSAIN-----REAQILIMTTEIL-----RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 228 ~~~v~lltGd~~~~-----~~~~IlV~Tpe~L-----~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
.+||++.++.... -.++|+++|...| ++.+.... .....+.+.+.||||||.++
T Consensus 155 -Ltvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~----~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 155 -LSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDI----SEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred -CeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccc----cccccCccceEEEeccccee
Confidence 6789887765433 2689999999866 66554321 22345688999999999875
No 156
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.06 E-value=4.2e-09 Score=124.88 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=108.5
Q ss_pred CCCCHHHHHHHHHHH----cCCcEEEEccCCcchHHHH--HHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeE
Q 001047 158 FRIDKFQRSSIEAFL----RGSSVVVSAPTSSGKTLIA--EAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNV 231 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll----~g~~vlv~apTGsGKTlv~--~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v 231 (1174)
+++-+||.-.++++. ++-+.|+.-..|-|||... .++.+......+.-||+||.-.|- .|.++|.++++.++|
T Consensus 398 i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTle-NWlrEf~kwCPsl~V 476 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLE-NWLREFAKWCPSLKV 476 (941)
T ss_pred CcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHH-HHHHHHHHhCCceEE
Confidence 457889999999864 4457899999999999654 344444555556789999986665 478999999999999
Q ss_pred EEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHH
Q 001047 232 GLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY 300 (1174)
Q Consensus 232 ~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~ 300 (1174)
-.++|...- ....+|+|+|+.....--.. . ....-.+++++|+||+|++-+. ....|..++.
T Consensus 477 e~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdD---R--sflk~~~~n~viyDEgHmLKN~-~SeRy~~LM~- 549 (941)
T KOG0389|consen 477 EPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDD---R--SFLKNQKFNYVIYDEGHMLKNR-TSERYKHLMS- 549 (941)
T ss_pred EeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHH---H--HHHHhccccEEEecchhhhhcc-chHHHHHhcc-
Confidence 999996531 13789999999754311000 0 0001247899999999999753 2233444433
Q ss_pred CCCCccEEEEccccC--ChHHHHHHHhcc
Q 001047 301 CPKEVQIICLSATVA--NADELAGWIGQI 327 (1174)
Q Consensus 301 l~~~~qiI~LSATl~--n~~~~~~~l~~~ 327 (1174)
++ .-..|+||.||- |-.++-..|..+
T Consensus 550 I~-An~RlLLTGTPLQNNL~ELiSLL~Fv 577 (941)
T KOG0389|consen 550 IN-ANFRLLLTGTPLQNNLKELISLLAFV 577 (941)
T ss_pred cc-ccceEEeeCCcccccHHHHHHHHHHH
Confidence 33 345789999974 455665555443
No 157
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.03 E-value=4.2e-09 Score=120.12 Aligned_cols=157 Identities=19% Similarity=0.156 Sum_probs=99.5
Q ss_pred HHHHHHHHHH-------------cCCcEEEEccCCcchHHHHHHHHHHHHhcCC-----eEEEEcccHHHHHHHHHHHHH
Q 001047 163 FQRSSIEAFL-------------RGSSVVVSAPTSSGKTLIAEAAAVATVANQR-----RIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 163 ~Q~~ai~~ll-------------~g~~vlv~apTGsGKTlv~~~~il~~l~~g~-----rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
||.+++..++ ..+.+|++..+|+|||+.++..+......+. .+||++|. ++..||..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 6888887763 3367899999999999988777654333222 59999999 888999999999
Q ss_pred HhC--CCeEEEEeCCC-------CCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHH
Q 001047 225 TFG--DNNVGLLTGDS-------AINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWE 295 (1174)
Q Consensus 225 ~~g--~~~v~lltGd~-------~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e 295 (1174)
.+. ...+..+.|.. ......+++|+|++.+...-..... ....-.++++||+||+|.+.+ ......
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~---~~l~~~~~~~vIvDEaH~~k~--~~s~~~ 154 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDK---EDLKQIKWDRVIVDEAHRLKN--KDSKRY 154 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTT---HHHHTSEEEEEEETTGGGGTT--TTSHHH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccccccc---cccccccceeEEEeccccccc--cccccc
Confidence 883 46788888776 3345789999999999811000000 000012589999999999953 233333
Q ss_pred HHHHHCCCCccEEEEccccCC--hHHHHHHHhc
Q 001047 296 EIIIYCPKEVQIICLSATVAN--ADELAGWIGQ 326 (1174)
Q Consensus 296 ~ii~~l~~~~qiI~LSATl~n--~~~~~~~l~~ 326 (1174)
..+..+. ....++|||||-. ..++...+..
T Consensus 155 ~~l~~l~-~~~~~lLSgTP~~n~~~dl~~~l~~ 186 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTPIQNSLEDLYSLLRF 186 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-SSSGSHHHHHHHHH
T ss_pred ccccccc-cceEEeeccccccccccccccchhe
Confidence 3344454 5678899999753 4666665554
No 158
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.03 E-value=9.5e-09 Score=126.43 Aligned_cols=151 Identities=20% Similarity=0.174 Sum_probs=105.6
Q ss_pred CCCHHHHHHHHHHH--c-C-CcEEEEccCCcchHHHHHHHHHHHH-hc-------C-CeEEEEcccHHHHHHHHHHHHHH
Q 001047 159 RIDKFQRSSIEAFL--R-G-SSVVVSAPTSSGKTLIAEAAAVATV-AN-------Q-RRIFYTTPLKALSNQKFREFRET 225 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll--~-g-~~vlv~apTGsGKTlv~~~~il~~l-~~-------g-~rvlvl~PtraLa~Q~~~~l~~~ 225 (1174)
.++.||++.++++. + - =+.|+|-..|-|||+..+-.+.... .+ . .-.||+||. .|+--|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 37889999999853 2 2 3789999999999998765554322 22 1 138999995 8999999999999
Q ss_pred hCCCeEEEEeCCCCC-------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHH
Q 001047 226 FGDNNVGLLTGDSAI-------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII 298 (1174)
Q Consensus 226 ~g~~~v~lltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii 298 (1174)
|+-.+|..+.|.... -.+++|+|+.++.++|-...- .-..+.++|+||-|-|-. -...+...+
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l--------~~~~wNYcVLDEGHVikN--~ktkl~kav 1123 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYL--------IKIDWNYCVLDEGHVIKN--SKTKLTKAV 1123 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHH--------HhcccceEEecCcceecc--hHHHHHHHH
Confidence 887777777775432 246899999999999654321 112677999999999864 233333444
Q ss_pred HHCCCCccEEEEccccC--ChHHHH
Q 001047 299 IYCPKEVQIICLSATVA--NADELA 321 (1174)
Q Consensus 299 ~~l~~~~qiI~LSATl~--n~~~~~ 321 (1174)
+.+.. -+.+.||.|+- |..++=
T Consensus 1124 kqL~a-~hRLILSGTPIQNnvleLW 1147 (1549)
T KOG0392|consen 1124 KQLRA-NHRLILSGTPIQNNVLELW 1147 (1549)
T ss_pred HHHhh-cceEEeeCCCcccCHHHHH
Confidence 44433 34678899974 344443
No 159
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.98 E-value=3.5e-08 Score=120.16 Aligned_cols=152 Identities=17% Similarity=0.200 Sum_probs=100.9
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHH-hCCCeEEEEeCCCCCCC-CCcEEEEcH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSNQKFREFRET-FGDNNVGLLTGDSAINR-EAQILIMTT 251 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~-~g~~~v~lltGd~~~~~-~~~IlV~Tp 251 (1174)
.-.+|-+|.|||||.+..-++-..+ .++.++++++.+++|+.+.+.+|+.. +.+..-..-.++..++. ..+-+++..
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~~~~~rLivqI 129 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDGRPYDRLIVQI 129 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccccccccCeEEEEe
Confidence 4568899999999988877666554 46789999999999999999999873 22222222222333332 456777777
Q ss_pred HHHHHHHhcccccccCCCCCCceeEEEEccccccccCCc-------HHHHHHHHHHCCCCccEEEEccccCChHHHHHHH
Q 001047 252 EILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISR-------GTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324 (1174)
Q Consensus 252 e~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~-------g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l 324 (1174)
+.|.+.. ...+.++++|||||+-.....-+ ..++..+...+.....+|+|-||+. +..-++|
T Consensus 130 dSL~R~~---------~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln--~~tvdFl 198 (824)
T PF02399_consen 130 DSLHRLD---------GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN--DQTVDFL 198 (824)
T ss_pred hhhhhcc---------cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC--HHHHHHH
Confidence 8776643 33577899999999976553222 2334333344555677999999996 4455666
Q ss_pred hcccC--ceeeecCC
Q 001047 325 GQIHG--KTELITSS 337 (1174)
Q Consensus 325 ~~~~~--~~~~i~~~ 337 (1174)
...++ +++++..+
T Consensus 199 ~~~Rp~~~i~vI~n~ 213 (824)
T PF02399_consen 199 ASCRPDENIHVIVNT 213 (824)
T ss_pred HHhCCCCcEEEEEee
Confidence 65544 34554443
No 160
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.80 E-value=1.5e-07 Score=117.03 Aligned_cols=122 Identities=18% Similarity=0.131 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHH---HHHhCCCeEEEE
Q 001047 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREF---RETFGDNNVGLL 234 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l---~~~~g~~~v~ll 234 (1174)
..+.++|. +-.+.=.+--|.-+.||=|||+++.+|+......|+.|-+++..--||..=++.+ -+++| ++||++
T Consensus 168 m~~yDVQl--iGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLG-Lsvg~i 244 (1112)
T PRK12901 168 MVHYDVQL--IGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHG-LSVDCI 244 (1112)
T ss_pred CcccchHH--hhhhhhcCCceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhC-Cceeec
Confidence 34555554 4443333456889999999999999999877777888888888888887544444 44455 678877
Q ss_pred eC-CCCCC-----CCCcEEEEcHHH-----HHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 235 TG-DSAIN-----REAQILIMTTEI-----LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 235 tG-d~~~~-----~~~~IlV~Tpe~-----L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
.. +.... -.++|.++|..- |++-+.... .....+.+.+.||||||.++
T Consensus 245 ~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~----~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 245 DKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSP----EDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred CCCCCCHHHHHHhCCCcceecCCCccccccchhccccch----HhhhCcCCceeEeechhhhh
Confidence 54 22211 268999999863 333322211 22334568899999999764
No 161
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.75 E-value=5.5e-07 Score=105.95 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=101.7
Q ss_pred CCCCHHHHHHHHHHHc-----CCcEEEEccCCcchHHHHHHHHHHHH-----hcC-----CeEEEEcccHHHHHHHHHHH
Q 001047 158 FRIDKFQRSSIEAFLR-----GSSVVVSAPTSSGKTLIAEAAAVATV-----ANQ-----RRIFYTTPLKALSNQKFREF 222 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~-----g~~vlv~apTGsGKTlv~~~~il~~l-----~~g-----~rvlvl~PtraLa~Q~~~~l 222 (1174)
+.+-|+|..++.++.- +.-.|+....|-|||+..+-.|+..- ..+ ..+||||| ..|+.||+.++
T Consensus 324 v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P-aSli~qW~~Ev 402 (901)
T KOG4439|consen 324 VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP-ASLIHQWEAEV 402 (901)
T ss_pred eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc-HHHHHHHHHHH
Confidence 3577899999999873 24678999999999997666665432 111 15999999 68999999999
Q ss_pred HHHhCC--CeEEEEeCCCCCC------CCCcEEEEcHHHHHHHHhcccccccCCCCCCc--eeEEEEccccccccCCcHH
Q 001047 223 RETFGD--NNVGLLTGDSAIN------REAQILIMTTEILRNMLYQSVGMVSSESGLFD--VDVIVLDEVHYLSDISRGT 292 (1174)
Q Consensus 223 ~~~~g~--~~v~lltGd~~~~------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~--v~lVIiDEaH~l~d~~~g~ 292 (1174)
...+.. +.|++++|....+ ..++|||+|+....+.-............|.+ +..||+||||.+.+. ..
T Consensus 403 ~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~--~t 480 (901)
T KOG4439|consen 403 ARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS--NT 480 (901)
T ss_pred HHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc--ch
Confidence 987753 5899999987422 47899999998766511000001112333444 456999999998753 22
Q ss_pred HHHHHHHHCCCCccEEEEccccC
Q 001047 293 VWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 293 ~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
.--..+-.+.. .-.-++|+|+-
T Consensus 481 q~S~AVC~L~a-~~RWclTGTPi 502 (901)
T KOG4439|consen 481 QCSKAVCKLSA-KSRWCLTGTPI 502 (901)
T ss_pred hHHHHHHHHhh-cceeecccCcc
Confidence 22222222322 22578899874
No 162
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.67 E-value=4.6e-07 Score=117.21 Aligned_cols=372 Identities=16% Similarity=0.144 Sum_probs=184.4
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCC------CC-CCCc
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATV--ANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSA------IN-REAQ 245 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l--~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~------~~-~~~~ 245 (1174)
+..+|.--||||||+.....+-..+ ....+++||+-++.|-.|....|... +....-...-++. +. ....
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~-~~~~~~~~~~~s~~~Lk~~l~~~~~~ 352 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSF-GKVAFNDPKAESTSELKELLEDGKGK 352 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHH-HHhhhhcccccCHHHHHHHHhcCCCc
Confidence 4689999999999988766554333 35679999999999999999999984 3221110011110 11 2458
Q ss_pred EEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEccccCCh-------H
Q 001047 246 ILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA-------D 318 (1174)
Q Consensus 246 IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~-------~ 318 (1174)
|+|+|.+.|...+..... ...-.+==+||+||||+- .+|..-..+-..++ +...++||+||--. .
T Consensus 353 ii~TTIQKf~~~~~~~~~----~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~-~a~~~gFTGTPi~~~d~~tt~~ 424 (962)
T COG0610 353 IIVTTIQKFNKAVKEDEL----ELLKRKNVVVIIDEAHRS---QYGELAKLLKKALK-KAIFIGFTGTPIFKEDKDTTKD 424 (962)
T ss_pred EEEEEecccchhhhcccc----cccCCCcEEEEEechhhc---cccHHHHHHHHHhc-cceEEEeeCCccccccccchhh
Confidence 999999999988765310 011122237899999994 45554444444444 48899999998421 2
Q ss_pred HHHHHHhcccCceeeecC---CCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCcccccccc
Q 001047 319 ELAGWIGQIHGKTELITS---SRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRK 395 (1174)
Q Consensus 319 ~~~~~l~~~~~~~~~i~~---~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 395 (1174)
.|..++.. ..+.. +.-.+|+.+.... .......... .........+....... ... .+... .
T Consensus 425 ~fg~ylh~-----Y~i~daI~Dg~vl~i~y~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~----~~k~~-~ 489 (962)
T COG0610 425 VFGDYLHT-----YTITDAIRDGAVLPVYYENRV---ELELIEESIK-EEAEELDERIEEITEDI-LEK----IKKKT-K 489 (962)
T ss_pred hhcceeEE-----EecchhhccCceeeEEEeecc---cccccccchh-hhhhhhHHHHhhhHHHH-HHH----HHHHH-h
Confidence 23333321 11111 1112233333220 0011100000 00000000000000000 000 00000 0
Q ss_pred ccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHH
Q 001047 396 HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV 475 (1174)
Q Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i 475 (1174)
.. . -..........+ ...+.+.... .....+.+.+-+.++..|..+.+....... ........
T Consensus 490 ~~---~--------~~~~~~~r~~~~----a~~i~~~f~~-~~~~~~kam~V~~sr~~~~~~~~~~~~~~~-~~~~~~~~ 552 (962)
T COG0610 490 NL---E--------FLAMLAVRLIRA----AKDIYDHFKK-EEVFDLKAMVVASSRKVAVELYEAEIAARL-DWHSKESL 552 (962)
T ss_pred hh---h--------HHhcchHHHHHH----HHHHHHHHHh-hcccCceEEEEEechHHHHHhHHHHhhhhh-hhhhhhhh
Confidence 00 0 000000000000 1111222222 223445677777777755555555432211 00000001
Q ss_pred HHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHH-HhcCCceEEEechhhhhcCCcCCceEEEeccccc
Q 001047 476 ELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL-FQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554 (1174)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~-F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~ 554 (1174)
...+........... .....|.......+...... .....+++||-++.+-+|.|-|..++...
T Consensus 553 ~~~i~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYv----- 617 (962)
T COG0610 553 EGAIKDYNTEFETDF----------DKKQSHAKLKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYV----- 617 (962)
T ss_pred hhHHHHHHhhcccch----------hhhhhhHHHHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEEe-----
Confidence 111222211111100 11111333333333333332 45588999999999999999999998875
Q ss_pred CCCCccccCHHHHHHhhcccCCCCCC--CccEEEEEeCCCCCHHHHHHHhhCCC
Q 001047 555 TASGRIQLTSNELFQMAGRAGRRGID--NRGHVVLVQTPYEGAEECCKLLFAGV 606 (1174)
Q Consensus 555 ~~~~~~p~s~~~y~Qr~GRAGR~G~d--~~G~~ill~~~~~~~~~~~~~~~~~~ 606 (1174)
+-|+--...+|-+-|+-|.-.+ ..|.++-+..-.++.....+++....
T Consensus 618 ----DK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~gl~e~l~~Al~~Y~~~~ 667 (962)
T COG0610 618 ----DKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRGLKEALKKALKLYSNEG 667 (962)
T ss_pred ----ccccccchHHHHHHHhccCCCCCCCCcEEEECcchHHHHHHHHHHhhccc
Confidence 4566677799999999997544 67888888876665555666555444
No 163
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.64 E-value=9.4e-08 Score=116.30 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=97.4
Q ss_pred CCCHHHHHHHHHHH---cC-CcEEEEccCCcchHHHHHHHHHH---HHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeE
Q 001047 159 RIDKFQRSSIEAFL---RG-SSVVVSAPTSSGKTLIAEAAAVA---TVANQRRIFYTTPLKALSNQKFREFRETFGDNNV 231 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll---~g-~~vlv~apTGsGKTlv~~~~il~---~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v 231 (1174)
++.+||...+.++. +| -+.|+.-.+|-|||..-+..|.. .....+--+|++|+-.|.+ |..+|..+.+.+..
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaPSv~~ 472 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAPSVQK 472 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhccccccceee
Confidence 68899999998865 33 47899999999999876554433 3333456789999999988 45677776666666
Q ss_pred EEEeCCCCC---------CCCCcEEEEcHHHHHHHHhcccccccCCCCCC--ceeEEEEccccccccCCcHHHHHHHHHH
Q 001047 232 GLLTGDSAI---------NREAQILIMTTEILRNMLYQSVGMVSSESGLF--DVDVIVLDEVHYLSDISRGTVWEEIIIY 300 (1174)
Q Consensus 232 ~lltGd~~~---------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~--~v~lVIiDEaH~l~d~~~g~~~e~ii~~ 300 (1174)
+.+.|.... ....+|+++|++-+.. ....|. ++.++||||-|+|.. .--.+...+..
T Consensus 473 i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----------dk~lLsKI~W~yMIIDEGHRmKN--a~~KLt~~L~t 540 (1157)
T KOG0386|consen 473 IQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----------DKALLSKISWKYMIIDEGHRMKN--AICKLTDTLNT 540 (1157)
T ss_pred eeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----------CHHHHhccCCcceeecccccccc--hhhHHHHHhhc
Confidence 666664421 2478999999996653 122333 456799999999974 22233333332
Q ss_pred CCCCccEEEEccccC
Q 001047 301 CPKEVQIICLSATVA 315 (1174)
Q Consensus 301 l~~~~qiI~LSATl~ 315 (1174)
.......+++|.|+.
T Consensus 541 ~y~~q~RLLLTGTPL 555 (1157)
T KOG0386|consen 541 HYRAQRRLLLTGTPL 555 (1157)
T ss_pred cccchhhhhhcCChh
Confidence 223445678888863
No 164
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.37 E-value=1.3e-05 Score=105.49 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=101.4
Q ss_pred CCCCHHHHHHHHHHH-----cCCcEEEEccCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHHhCC
Q 001047 158 FRIDKFQRSSIEAFL-----RGSSVVVSAPTSSGKTLIAEAAAVATVAN----QRRIFYTTPLKALSNQKFREFRETFGD 228 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll-----~g~~vlv~apTGsGKTlv~~~~il~~l~~----g~rvlvl~PtraLa~Q~~~~l~~~~g~ 228 (1174)
..++++|.+.++++. .+.+.+++...|.|||+..+..+...... .+.+++++|+ ++..+|..++.+..+.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCcc
Confidence 358899999998855 25678889999999998877666542222 3478999996 7778888899876666
Q ss_pred Ce-EEEEeCCCCC-----C-----CC------CcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcH
Q 001047 229 NN-VGLLTGDSAI-----N-----RE------AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRG 291 (1174)
Q Consensus 229 ~~-v~lltGd~~~-----~-----~~------~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g 291 (1174)
.+ +-...|.... . .. .+++++|.+.+...+... ....-..++.+|+||+|.+... -.
T Consensus 416 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~-----~~l~~~~~~~~v~DEa~~ikn~-~s 489 (866)
T COG0553 416 LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDH-----GGLKKIEWDRVVLDEAHRIKND-QS 489 (866)
T ss_pred ccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhH-----HHHhhceeeeeehhhHHHHhhh-hh
Confidence 66 7777776641 1 12 689999999998842110 1122347889999999997642 23
Q ss_pred HHHHHHHHHCCCCccEEEEcccc
Q 001047 292 TVWEEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 292 ~~~e~ii~~l~~~~qiI~LSATl 314 (1174)
..+..+. .+.... .+++|.||
T Consensus 490 ~~~~~l~-~~~~~~-~~~LtgTP 510 (866)
T COG0553 490 SEGKALQ-FLKALN-RLDLTGTP 510 (866)
T ss_pred HHHHHHH-HHhhcc-eeeCCCCh
Confidence 3333333 333222 48999998
No 165
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.35 E-value=0.00015 Score=84.85 Aligned_cols=114 Identities=12% Similarity=0.033 Sum_probs=82.4
Q ss_pred hCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHH
Q 001047 438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 517 (1174)
Q Consensus 438 ~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v 517 (1174)
......+|||++|=-.--.+-.+|...++ ..+..|--.++.+-...
T Consensus 297 ~~~~~~~LIfIPSYfDfVRlRN~lk~~~~----------------------------------sF~~i~EYts~~~isRA 342 (442)
T PF06862_consen 297 DSKMSGTLIFIPSYFDFVRLRNYLKKENI----------------------------------SFVQISEYTSNSDISRA 342 (442)
T ss_pred ccCCCcEEEEecchhhhHHHHHHHHhcCC----------------------------------eEEEecccCCHHHHHHH
Confidence 45567899999997666666666654332 45667777888888899
Q ss_pred HHHHhcCCceEEEechhh--hhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCC----CCCccEEEEEeCC
Q 001047 518 EELFQRGLVKVVFATETL--AAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG----IDNRGHVVLVQTP 591 (1174)
Q Consensus 518 ~~~F~~G~ikVLVAT~tl--a~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G----~d~~G~~ill~~~ 591 (1174)
-..|..|..+||+-|+=+ =+=..+..+..||. |.+|..+.=|..+++-.+... ....+.|.++++.
T Consensus 343 R~~F~~G~~~iLL~TER~HFfrRy~irGi~~viF--------Y~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 343 RSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIF--------YGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred HHHHHcCCceEEEEEhHHhhhhhceecCCcEEEE--------ECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 999999999999999865 35667778888888 777877776666665444332 1235677788877
Q ss_pred CC
Q 001047 592 YE 593 (1174)
Q Consensus 592 ~~ 593 (1174)
.+
T Consensus 415 ~D 416 (442)
T PF06862_consen 415 YD 416 (442)
T ss_pred hH
Confidence 65
No 166
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.31 E-value=4.2e-06 Score=92.12 Aligned_cols=133 Identities=23% Similarity=0.263 Sum_probs=94.3
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHH---hC
Q 001047 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRET---FG 227 (1174)
Q Consensus 151 ~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~---~g 227 (1174)
......++.|++.|.-++-.+..|+ |+...||=|||+++.+|+......|..|=|++..--||..=++++... ||
T Consensus 69 a~~r~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LG 146 (266)
T PF07517_consen 69 AARRTLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLG 146 (266)
T ss_dssp HHHHHTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhh
Confidence 3455677889999999988887766 999999999999999988877788999999999999999877777664 45
Q ss_pred CCeEEEEeCCCCCCC-----CCcEEEEcHHHHHH-HHhcccccccCCCCCCceeEEEEccccccc
Q 001047 228 DNNVGLLTGDSAINR-----EAQILIMTTEILRN-MLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 228 ~~~v~lltGd~~~~~-----~~~IlV~Tpe~L~~-~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
+.++.++++..... .++|+++|...+.- .|...............+.++||||||.++
T Consensus 147 -lsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 147 -LSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp ---EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred -hccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 67899888765332 57899999986643 232211111122235789999999999875
No 167
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.28 E-value=6.1e-05 Score=88.77 Aligned_cols=142 Identities=15% Similarity=0.236 Sum_probs=102.1
Q ss_pred CCCCHHHHHHHHHHH----cCCcEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHHHhCCCe
Q 001047 158 FRIDKFQRSSIEAFL----RGSSVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPLKALSNQKFREFRETFGDNN 230 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll----~g~~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~PtraLa~Q~~~~l~~~~g~~~ 230 (1174)
-++..||.+.+.++. +|-+.|+....|-|||+..+-.+.+.... -+-.||++|--.| +.|+.++.++++..+
T Consensus 566 ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL-~NWaqEisrFlP~~k 644 (1185)
T KOG0388|consen 566 CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTL-HNWAQEISRFLPSFK 644 (1185)
T ss_pred hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHH-hHHHHHHHHhCccce
Confidence 356779999998865 67899999999999999886554443322 2457889997655 457889999889888
Q ss_pred EEEEeCCCC----------------CCCCCcEEEEcHHHHH---HHHhcccccccCCCCCCceeEEEEccccccccCCcH
Q 001047 231 VGLLTGDSA----------------INREAQILIMTTEILR---NMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRG 291 (1174)
Q Consensus 231 v~lltGd~~----------------~~~~~~IlV~Tpe~L~---~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g 291 (1174)
+.-+.|..+ .+...+|+|++++.+. +++.+ -++.+.|+|||+.+-. +-.
T Consensus 645 ~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk-----------vKWQYMILDEAQAIKS-SsS 712 (1185)
T KOG0388|consen 645 VLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK-----------VKWQYMILDEAQAIKS-SSS 712 (1185)
T ss_pred eecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh-----------hhhhheehhHHHHhhh-hhh
Confidence 888888754 2346789999988543 22221 1467899999999864 445
Q ss_pred HHHHHHHHHCCCCccEEEEcccc
Q 001047 292 TVWEEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 292 ~~~e~ii~~l~~~~qiI~LSATl 314 (1174)
..|..++..- ....++||.|+
T Consensus 713 ~RWKtLLsF~--cRNRLLLTGTP 733 (1185)
T KOG0388|consen 713 SRWKTLLSFK--CRNRLLLTGTP 733 (1185)
T ss_pred hHHHHHhhhh--ccceeeecCCc
Confidence 5677776542 12368899986
No 168
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.26 E-value=7e-06 Score=103.41 Aligned_cols=138 Identities=14% Similarity=0.230 Sum_probs=84.6
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHH---------HHhCCCeEE--EEeCCC---
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVAN--QRRIFYTTPLKALSNQKFREFR---------ETFGDNNVG--LLTGDS--- 238 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~--g~rvlvl~PtraLa~Q~~~~l~---------~~~g~~~v~--lltGd~--- 238 (1174)
.++.+.++||+|||.+|+-.|++.... -.++||+||+.|.-..+..-+. ..+++..+. ++.+..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 478999999999999999888776554 3589999999988776654433 334444333 333221
Q ss_pred ----C-C------------C-CCCcEEEEcHHHHHHHHh-ccc-c-c-ccCC-CCCCce----eEEEEccccccccCCcH
Q 001047 239 ----A-I------------N-REAQILIMTTEILRNMLY-QSV-G-M-VSSE-SGLFDV----DVIVLDEVHYLSDISRG 291 (1174)
Q Consensus 239 ----~-~------------~-~~~~IlV~Tpe~L~~~L~-~~~-~-~-~~~~-~~l~~v----~lVIiDEaH~l~d~~~g 291 (1174)
. . + ....|+|+|.+.|..-.. +.. . . +.+. ..+..+ -+||+||.|++... +
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~--~ 217 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD--N 217 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--h
Confidence 0 0 0 146899999998865221 000 0 0 0000 111111 37999999998532 4
Q ss_pred HHHHHHHHHCCCCccEEEEccccCC
Q 001047 292 TVWEEIIIYCPKEVQIICLSATVAN 316 (1174)
Q Consensus 292 ~~~e~ii~~l~~~~qiI~LSATl~n 316 (1174)
..|+.+ ..+.+.. ++.+|||.++
T Consensus 218 k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 218 KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred HHHHHH-HhcCccc-EEEEeeecCC
Confidence 467655 4444333 5679999975
No 169
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.21 E-value=3.8e-06 Score=94.90 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=59.3
Q ss_pred cCCCCCCHHHHHH----HHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCC-----eEEEEcccHHHHHHHHHHHHH
Q 001047 155 IYDFRIDKFQRSS----IEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQR-----RIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 155 ~~~~~~~~~Q~~a----i~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~-----rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
.|||+++|.|.+. ...+.+|+++++.||||+|||++++.|++..+. .+. +++|.++|.++..|...++++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 3889999999994 455667899999999999999999999976544 233 899999999999998888776
Q ss_pred H
Q 001047 225 T 225 (1174)
Q Consensus 225 ~ 225 (1174)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 3
No 170
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.21 E-value=3.8e-06 Score=94.90 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=59.3
Q ss_pred cCCCCCCHHHHHH----HHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCC-----eEEEEcccHHHHHHHHHHHHH
Q 001047 155 IYDFRIDKFQRSS----IEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQR-----RIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 155 ~~~~~~~~~Q~~a----i~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~-----rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
.|||+++|.|.+. ...+.+|+++++.||||+|||++++.|++..+. .+. +++|.++|.++..|...++++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 3889999999994 455667899999999999999999999976544 233 899999999999998888776
Q ss_pred H
Q 001047 225 T 225 (1174)
Q Consensus 225 ~ 225 (1174)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 3
No 171
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.0001 Score=84.83 Aligned_cols=129 Identities=12% Similarity=0.230 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccC-Ccch--HHHHHHHHHHHHhc-------------------------------CCe
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPT-SSGK--TLIAEAAAVATVAN-------------------------------QRR 204 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apT-GsGK--Tlv~~~~il~~l~~-------------------------------g~r 204 (1174)
++++.|.+.+..+.+.+|++..-.| +.|+ +-+|.+-++.++.+ .++
T Consensus 216 pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRpk 295 (698)
T KOG2340|consen 216 PLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRPK 295 (698)
T ss_pred cchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCce
Confidence 5899999999999999998753222 3455 34565556655420 138
Q ss_pred EEEEcccHHHHHHHHHHHHHH-hCCCe----E-------EEEeCCCCCC-------------------------------
Q 001047 205 IFYTTPLKALSNQKFREFRET-FGDNN----V-------GLLTGDSAIN------------------------------- 241 (1174)
Q Consensus 205 vlvl~PtraLa~Q~~~~l~~~-~g~~~----v-------~lltGd~~~~------------------------------- 241 (1174)
|||++|+|+-|-.+...+..+ +|... | +-+.|++...
T Consensus 296 VLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftkK 375 (698)
T KOG2340|consen 296 VLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTKK 375 (698)
T ss_pred EEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHHH
Confidence 999999999999999999887 45322 1 2233321100
Q ss_pred --------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccccc
Q 001047 242 --------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287 (1174)
Q Consensus 242 --------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d 287 (1174)
..++|+||+|=-|+-++.+..........|+.+.++|||-||-+..
T Consensus 376 tikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~ 429 (698)
T KOG2340|consen 376 TIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLM 429 (698)
T ss_pred HHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHH
Confidence 1478999999999988775554445566789999999999999863
No 172
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.12 E-value=2.1e-05 Score=83.73 Aligned_cols=125 Identities=20% Similarity=0.264 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHcC--CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeC
Q 001047 159 RIDKFQRSSIEAFLRG--SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g--~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltG 236 (1174)
++++-|.+|+..++.+ +-++|.+|.|+|||.+...........+.++++++||...+....+. .+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~----~~--------- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREK----TG--------- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHH----HT---------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHh----hC---------
Confidence 3788999999998754 35778899999999875443333334578999999999888765444 22
Q ss_pred CCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCC-CccEEEEc
Q 001047 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK-EVQIICLS 311 (1174)
Q Consensus 237 d~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~-~~qiI~LS 311 (1174)
+-..|-..+........ ......+...++||||||-.+. ...+..++..++. +.++|++-
T Consensus 68 ---------~~a~Ti~~~l~~~~~~~--~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~klilvG 128 (196)
T PF13604_consen 68 ---------IEAQTIHSFLYRIPNGD--DEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKSGAKLILVG 128 (196)
T ss_dssp ---------S-EEEHHHHTTEECCEE--CCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-EEEEEE
T ss_pred ---------cchhhHHHHHhcCCccc--ccccccCCcccEEEEecccccC----HHHHHHHHHHHHhcCCEEEEEC
Confidence 11233333222111100 0001114566799999999975 3456667777665 56666653
No 173
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.04 E-value=1.2e-05 Score=85.02 Aligned_cols=124 Identities=25% Similarity=0.362 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCC--eEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeC
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR--RIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~--rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltG 236 (1174)
+.++.|..++.+++..+.+++.||.|+|||+.+...+++.+..+. +++|+-|..+.. ..+|.+.|
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~-------------~~lGflpG 70 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAG-------------EDLGFLPG 70 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT-----------------SS--
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCc-------------cccccCCC
Confidence 467899999999998889999999999999999999998887764 899998876431 12444444
Q ss_pred CCCCC-------------------------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcH
Q 001047 237 DSAIN-------------------------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRG 291 (1174)
Q Consensus 237 d~~~~-------------------------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g 291 (1174)
+.... ....|-+....-++ + ..++ -.+||+|||+.+. .
T Consensus 71 ~~~eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iR-----------G-rt~~-~~~iIvDEaQN~t----~ 133 (205)
T PF02562_consen 71 DLEEKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIR-----------G-RTFD-NAFIIVDEAQNLT----P 133 (205)
T ss_dssp -------TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGT-----------T---B--SEEEEE-SGGG------H
T ss_pred CHHHHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhc-----------C-cccc-ceEEEEecccCCC----H
Confidence 43211 12334444433222 1 1233 3899999999974 5
Q ss_pred HHHHHHHHHCCCCccEEEEcc
Q 001047 292 TVWEEIIIYCPKEVQIICLSA 312 (1174)
Q Consensus 292 ~~~e~ii~~l~~~~qiI~LSA 312 (1174)
..+..++.++..+.++|++-=
T Consensus 134 ~~~k~ilTR~g~~skii~~GD 154 (205)
T PF02562_consen 134 EELKMILTRIGEGSKIIITGD 154 (205)
T ss_dssp HHHHHHHTTB-TT-EEEEEE-
T ss_pred HHHHHHHcccCCCcEEEEecC
Confidence 567778888888888877743
No 174
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.89 E-value=0.00011 Score=90.74 Aligned_cols=145 Identities=12% Similarity=0.157 Sum_probs=102.0
Q ss_pred CCCHHHHHHHHHHH----cCCcEEEEccCCcchHHHHHHHHHHHH-h--cCCeEEEEcccHHHHHHHHHHHHHHhCCCeE
Q 001047 159 RIDKFQRSSIEAFL----RGSSVVVSAPTSSGKTLIAEAAAVATV-A--NQRRIFYTTPLKALSNQKFREFRETFGDNNV 231 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll----~g~~vlv~apTGsGKTlv~~~~il~~l-~--~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v 231 (1174)
.++.||...++++. ++-|.|+.-..|-|||+.-+-.+.+.. . +-+--||++||-.+.| |.-+|++++..+++
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLn-WEMElKRwcPglKI 693 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILN-WEMELKRWCPGLKI 693 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhh-hhHHHhhhCCcceE
Confidence 57889999998864 345889999999999976543332221 1 2345689999976665 67789999999888
Q ss_pred EEEeCCCCC----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC
Q 001047 232 GLLTGDSAI----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC 301 (1174)
Q Consensus 232 ~lltGd~~~----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l 301 (1174)
-.+.|.... -...+|.|+++..+..-+.. ..-.++.++|+||||++-. .....|+.++...
T Consensus 694 LTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A--------FkrkrWqyLvLDEaqnIKn-fksqrWQAllnfn 764 (1958)
T KOG0391|consen 694 LTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA--------FKRKRWQYLVLDEAQNIKN-FKSQRWQALLNFN 764 (1958)
T ss_pred eeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH--------HHhhccceeehhhhhhhcc-hhHHHHHHHhccc
Confidence 888886531 12457888887765544322 1234789999999999974 4556787776553
Q ss_pred CCCccEEEEccccC
Q 001047 302 PKEVQIICLSATVA 315 (1174)
Q Consensus 302 ~~~~qiI~LSATl~ 315 (1174)
..+.++|+.|+-
T Consensus 765 --sqrRLLLtgTPL 776 (1958)
T KOG0391|consen 765 --SQRRLLLTGTPL 776 (1958)
T ss_pred --hhheeeecCCch
Confidence 345788888863
No 175
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.81 E-value=0.00097 Score=81.35 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=45.1
Q ss_pred CceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEE
Q 001047 525 LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL 587 (1174)
Q Consensus 525 ~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~il 587 (1174)
-.+.||+-.+|-+|-|=|+|-+|+. ....-|..+=+|-+||.-|-..+..|.-+.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIck--------L~~S~SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICK--------LRSSGSEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEE--------ecCCCcchHHHHHhccceeeeeccccceec
Confidence 4799999999999999999998887 445567778899999999976666665543
No 176
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.80 E-value=7.5e-05 Score=87.31 Aligned_cols=93 Identities=17% Similarity=0.253 Sum_probs=67.8
Q ss_pred cEEEEccCCcchHHHHHHHHHHH--HhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVAT--VANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEI 253 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~--l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~ 253 (1174)
.++|.|..|||||+++...+... ...+.+++++++..+|.+..+..+..... .......+..+..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-------------~~~~~~~~~~~~~ 69 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN-------------PKLKKSDFRKPTS 69 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcc-------------cchhhhhhhhhHH
Confidence 57899999999999998777665 56788999999999999988888877440 1122333445555
Q ss_pred HHHHHhcccccccCCCCCCceeEEEEcccccccc
Q 001047 254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287 (1174)
Q Consensus 254 L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d 287 (1174)
+.+.+.. .......+++|||||||++.+
T Consensus 70 ~i~~~~~------~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 70 FINNYSE------SDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred HHhhccc------ccccCCcCCEEEEehhHhhhh
Confidence 5443321 133456899999999999986
No 177
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.78 E-value=0.0002 Score=88.44 Aligned_cols=152 Identities=17% Similarity=0.181 Sum_probs=91.9
Q ss_pred HHhhcCCCC--CCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHH--HHHHhc--CCeEEEEcccHHHHHHHHHHHHH
Q 001047 151 ELASIYDFR--IDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAA--VATVAN--QRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 151 ~l~~~~~~~--~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~i--l~~l~~--g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
.+...|+.. ..++|+.|+...+.++-++|.|++|+|||++....+ +..... ..++++++||---+..+.+.+..
T Consensus 142 ~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 142 TLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred HHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 345555544 348999999999999999999999999998754333 222222 34788999999888877776655
Q ss_pred HhCCCeEEEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCC
Q 001047 225 TFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKE 304 (1174)
Q Consensus 225 ~~g~~~v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~ 304 (1174)
..... ++ ..+ .......-..|-.+|+........+.......-.+++|||||+-++. ...+..++..++++
T Consensus 222 ~~~~~--~~-~~~--~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~ 292 (615)
T PRK10875 222 ALRQL--PL-TDE--QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPH 292 (615)
T ss_pred hhhcc--cc-chh--hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccC
Confidence 33221 10 100 01111122345444443221111111112223357899999999874 45556677788888
Q ss_pred ccEEEEc
Q 001047 305 VQIICLS 311 (1174)
Q Consensus 305 ~qiI~LS 311 (1174)
.++|++-
T Consensus 293 ~rlIlvG 299 (615)
T PRK10875 293 ARVIFLG 299 (615)
T ss_pred CEEEEec
Confidence 8888763
No 178
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.77 E-value=0.00021 Score=88.15 Aligned_cols=152 Identities=14% Similarity=0.209 Sum_probs=91.7
Q ss_pred HHhhcCCCC-CCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHH--HHHHhc---CCeEEEEcccHHHHHHHHHHHHH
Q 001047 151 ELASIYDFR-IDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAA--VATVAN---QRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 151 ~l~~~~~~~-~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~i--l~~l~~---g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
.+...++.. -.++|+.|+..++.++-++|+|+.|+|||++....+ +..... +.++++++||---+..+.+.+..
T Consensus 136 ~l~~~~~~~~~~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 136 ILENLFPLLNEQNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHhhccccccHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 444444321 237999999999999999999999999998754433 222222 15799999999888877766655
Q ss_pred HhCCCeEEEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCC
Q 001047 225 TFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKE 304 (1174)
Q Consensus 225 ~~g~~~v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~ 304 (1174)
....... .. .......+-..|..+|+........+.........+++||||||-++. ...+..++..+++.
T Consensus 216 ~~~~l~~---~~--~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~ 286 (586)
T TIGR01447 216 AVKNLAA---AE--ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPN 286 (586)
T ss_pred hhccccc---ch--hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCC
Confidence 4332111 00 111111223455555543322111111111223368999999998874 34566777788888
Q ss_pred ccEEEEc
Q 001047 305 VQIICLS 311 (1174)
Q Consensus 305 ~qiI~LS 311 (1174)
.++|++-
T Consensus 287 ~rlIlvG 293 (586)
T TIGR01447 287 TKLILLG 293 (586)
T ss_pred CEEEEEC
Confidence 8887763
No 179
>PRK10536 hypothetical protein; Provisional
Probab=97.77 E-value=8.5e-05 Score=80.78 Aligned_cols=135 Identities=19% Similarity=0.257 Sum_probs=80.6
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHH----------HHHHHHHHH
Q 001047 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ--RRIFYTTPLKALSN----------QKFREFRET 225 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g--~rvlvl~PtraLa~----------Q~~~~l~~~ 225 (1174)
.+.+..|...+.++.++..+++.||+|+|||+.+....++.+.++ .+++++-|+..... +++.-+-..
T Consensus 58 ~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~p 137 (262)
T PRK10536 58 LARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRP 137 (262)
T ss_pred cCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHH
Confidence 346789999999999988999999999999999988888766443 36666667653221 121111110
Q ss_pred hCCCeEEEEeCCCCC----C-CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHH
Q 001047 226 FGDNNVGLLTGDSAI----N-REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY 300 (1174)
Q Consensus 226 ~g~~~v~lltGd~~~----~-~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~ 300 (1174)
+-+. ...+.|.... + ....|-|....-++ ...+ +-++||+|||+.+. -..+..++.+
T Consensus 138 i~D~-L~~~~~~~~~~~~~~~~~~~Iei~~l~ymR------------Grtl-~~~~vIvDEaqn~~----~~~~k~~ltR 199 (262)
T PRK10536 138 VYDV-LVRRLGASFMQYCLRPEIGKVEIAPFAYMR------------GRTF-ENAVVILDEAQNVT----AAQMKMFLTR 199 (262)
T ss_pred HHHH-HHHHhChHHHHHHHHhccCcEEEecHHHhc------------CCcc-cCCEEEEechhcCC----HHHHHHHHhh
Confidence 0000 0000111100 0 12334455443322 1123 33899999999985 2666777888
Q ss_pred CCCCccEEEE
Q 001047 301 CPKEVQIICL 310 (1174)
Q Consensus 301 l~~~~qiI~L 310 (1174)
++.+.++|+.
T Consensus 200 ~g~~sk~v~~ 209 (262)
T PRK10536 200 LGENVTVIVN 209 (262)
T ss_pred cCCCCEEEEe
Confidence 8887777665
No 180
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.76 E-value=0.00033 Score=77.49 Aligned_cols=156 Identities=21% Similarity=0.148 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHHH----------cCCcEEEEccCCcchHHHHHHHHHHHHhcCC-eEEEEcccHHHHHHHHHHHHHHhC
Q 001047 159 RIDKFQRSSIEAFL----------RGSSVVVSAPTSSGKTLIAEAAAVATVANQR-RIFYTTPLKALSNQKFREFRETFG 227 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll----------~g~~vlv~apTGsGKTlv~~~~il~~l~~g~-rvlvl~PtraLa~Q~~~~l~~~~g 227 (1174)
.++..|.+++-... .+.-+++--.||.||--+..-.|++.+.+|+ |.|+++..-.|-....++++..-+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~ 116 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGA 116 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCC
Confidence 46788888876543 2346888999999999877777788777766 699999999999999999998432
Q ss_pred CC-eEEEEeC---CCCCCCCCcEEEEcHHHHHHHHhcccccccC----CCCC--CceeEEEEccccccccCCc-------
Q 001047 228 DN-NVGLLTG---DSAINREAQILIMTTEILRNMLYQSVGMVSS----ESGL--FDVDVIVLDEVHYLSDISR------- 290 (1174)
Q Consensus 228 ~~-~v~lltG---d~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~----~~~l--~~v~lVIiDEaH~l~d~~~------- 290 (1174)
.. .+..+.. +....-...|+++|+..|...-......... -.|+ +-=.+|||||||.+....-
T Consensus 117 ~~i~v~~l~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk 196 (303)
T PF13872_consen 117 DNIPVHPLNKFKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSK 196 (303)
T ss_pred CcccceechhhccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccH
Confidence 21 1111110 1112235679999999988765321110000 0011 1124899999999875432
Q ss_pred -HHHHHHHHHHCCCCccEEEEccccC
Q 001047 291 -GTVWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 291 -g~~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
+....++-..+| +.+++.+|||-.
T Consensus 197 ~g~avl~LQ~~LP-~ARvvY~SATga 221 (303)
T PF13872_consen 197 TGIAVLELQNRLP-NARVVYASATGA 221 (303)
T ss_pred HHHHHHHHHHhCC-CCcEEEeccccc
Confidence 233444455565 577999999963
No 181
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.73 E-value=9.9e-05 Score=86.93 Aligned_cols=70 Identities=11% Similarity=0.294 Sum_probs=60.8
Q ss_pred hcCCCCCCHHHHHHHHHHHcCC-cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q 001047 154 SIYDFRIDKFQRSSIEAFLRGS-SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFR 223 (1174)
Q Consensus 154 ~~~~~~~~~~Q~~ai~~ll~g~-~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~ 223 (1174)
..++..+.+-|.+|+....+.+ -.++.||+|+|||......|.+.+.++.++|+.+||.+-+..+.+++.
T Consensus 180 ~~~~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 180 TFFNKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccCCccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 3455678999999999988874 567899999999999888899999999999999999998888888654
No 182
>PF13245 AAA_19: Part of AAA domain
Probab=97.67 E-value=0.00013 Score=64.70 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=43.6
Q ss_pred HHH-HHHcCCcEEEEccCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHH
Q 001047 167 SIE-AFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN----QRRIFYTTPLKALSNQKFREF 222 (1174)
Q Consensus 167 ai~-~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~----g~rvlvl~PtraLa~Q~~~~l 222 (1174)
|+. ++..+.-++|.||.|||||....-.+...+.. +.+++|++|++..++++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 444 33324456669999999997777777666654 789999999999999988887
No 183
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.67 E-value=0.0004 Score=88.18 Aligned_cols=133 Identities=13% Similarity=0.165 Sum_probs=85.0
Q ss_pred HhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh-cC--CeEEEEcccHHHHHHHHHHHHHHhCC
Q 001047 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQ--RRIFYTTPLKALSNQKFREFRETFGD 228 (1174)
Q Consensus 152 l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g--~rvlvl~PtraLa~Q~~~~l~~~~g~ 228 (1174)
+.....+.+++.|++|+..+..++.++|.++.|+|||++.-.. +..+. .+ ..+++++||-.-+..+ .+..|.
T Consensus 316 ~~~~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i-~~~~~~~~~~~~v~l~ApTg~AA~~L----~e~~g~ 390 (720)
T TIGR01448 316 VEKKLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAI-IELAEELGGLLPVGLAAPTGRAAKRL----GEVTGL 390 (720)
T ss_pred HHHhcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHH-HHHHHHcCCCceEEEEeCchHHHHHH----HHhcCC
Confidence 3445678899999999999998899999999999999876433 33333 34 6788899998777643 332221
Q ss_pred CeEEEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEE
Q 001047 229 NNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQII 308 (1174)
Q Consensus 229 ~~v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI 308 (1174)
. ..|..+++....... ...........++||+|||+++.. ..+..++..++.+.++|
T Consensus 391 ~------------------a~Tih~lL~~~~~~~-~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~~~~~rli 447 (720)
T TIGR01448 391 T------------------ASTIHRLLGYGPDTF-RHNHLEDPIDCDLLIVDESSMMDT----WLALSLLAALPDHARLL 447 (720)
T ss_pred c------------------cccHHHHhhccCCcc-chhhhhccccCCEEEEeccccCCH----HHHHHHHHhCCCCCEEE
Confidence 0 123333332211100 000001123578999999999853 34566677788888888
Q ss_pred EEcc
Q 001047 309 CLSA 312 (1174)
Q Consensus 309 ~LSA 312 (1174)
++-=
T Consensus 448 lvGD 451 (720)
T TIGR01448 448 LVGD 451 (720)
T ss_pred EECc
Confidence 8743
No 184
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.0013 Score=81.86 Aligned_cols=127 Identities=18% Similarity=0.190 Sum_probs=87.5
Q ss_pred hhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC--CCe
Q 001047 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG--DNN 230 (1174)
Q Consensus 153 ~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g--~~~ 230 (1174)
+...++.+..+| .+-.+.-...-+.-+.||=|||+++.+|+.-....|+.+.+++..-=||..-...+...|. +..
T Consensus 74 ~Rvlg~~~~dVQ--liG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGls 151 (822)
T COG0653 74 KRVLGMRHFDVQ--LLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLS 151 (822)
T ss_pred HHhcCCChhhHH--HhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCc
Confidence 334445555555 4455544556788999999999999999977767788888888888888876666666443 357
Q ss_pred EEEEeCCCCCCC-----CCcEEEEcHHHH-----H-HHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 231 VGLLTGDSAINR-----EAQILIMTTEIL-----R-NMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 231 v~lltGd~~~~~-----~~~IlV~Tpe~L-----~-~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
||++..+..... .++|.++|...| + +|.+.. .........+.|+||++-++
T Consensus 152 vG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~-----ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 152 VGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQ-----EEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred eeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccH-----HHhhhccCCeEEEcchhhee
Confidence 888776664332 689999998743 2 233332 23345568889999998764
No 185
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.59 E-value=0.00037 Score=74.52 Aligned_cols=135 Identities=19% Similarity=0.178 Sum_probs=89.2
Q ss_pred hhcCCCCCCHHHHHHHHHHHc---CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCC
Q 001047 153 ASIYDFRIDKFQRSSIEAFLR---GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDN 229 (1174)
Q Consensus 153 ~~~~~~~~~~~Q~~ai~~ll~---g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~ 229 (1174)
.-..++-+++.|.+....+.+ |+|.+.++-+|.|||.|..-.+...+.+|.+.+.++=-++|..|.+..+...+|..
T Consensus 17 E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~lg~l 96 (229)
T PF12340_consen 17 EIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQMRQMLRSRLGGL 96 (229)
T ss_pred HHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 334556789999999998885 47999999999999988754444555666655444444899999999999988753
Q ss_pred ---eEEEEeCCCCCC-----------------CCCcEEEEcHHHHHHHHhcccc------------cccCCCCCCceeEE
Q 001047 230 ---NVGLLTGDSAIN-----------------REAQILIMTTEILRNMLYQSVG------------MVSSESGLFDVDVI 277 (1174)
Q Consensus 230 ---~v~lltGd~~~~-----------------~~~~IlV~Tpe~L~~~L~~~~~------------~~~~~~~l~~v~lV 277 (1174)
.|..+..+.... ....|+++|||.+.+....... ...-..++++...=
T Consensus 97 ~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rd 176 (229)
T PF12340_consen 97 LNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRD 176 (229)
T ss_pred hCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCe
Confidence 344444332211 2456999999976554222110 00111234445566
Q ss_pred EEcccccccc
Q 001047 278 VLDEVHYLSD 287 (1174)
Q Consensus 278 IiDEaH~l~d 287 (1174)
|+||+|.++.
T Consensus 177 ilDEsDe~L~ 186 (229)
T PF12340_consen 177 ILDESDEILS 186 (229)
T ss_pred EeECchhccC
Confidence 8999998753
No 186
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=97.51 E-value=0.0028 Score=77.57 Aligned_cols=94 Identities=13% Similarity=-0.048 Sum_probs=69.7
Q ss_pred eEecCCCCHHHHHHHHHHHhc----CCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCC
Q 001047 503 AAHHAGCLPIWKSFIEELFQR----GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578 (1174)
Q Consensus 503 ~~~Hsgl~~~~R~~v~~~F~~----G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G 578 (1174)
.-+.|......|+.+-..|.+ ...-.||+|-+.+.|||+-+.+-||. ++..++|.-=+|-+=|+-|.|
T Consensus 1192 yriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVII--------fDasWNPSyDtQSIFRvyRfG 1263 (1567)
T KOG1015|consen 1192 YRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVII--------FDASWNPSYDTQSIFRVYRFG 1263 (1567)
T ss_pred EEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEE--------EecccCCccchHHHHHHHhhc
Confidence 345788999999999999987 22358999999999999999888888 444445555679999999999
Q ss_pred CCCccEEEEE-eCCCCCHHHHHHHhhC
Q 001047 579 IDNRGHVVLV-QTPYEGAEECCKLLFA 604 (1174)
Q Consensus 579 ~d~~G~~ill-~~~~~~~~~~~~~~~~ 604 (1174)
+.++-++|-| ....++-.-|.+.+..
T Consensus 1264 QtKPvyiYRfiAqGTmEeKIYkRQVTK 1290 (1567)
T KOG1015|consen 1264 QTKPVYIYRFIAQGTMEEKIYKRQVTK 1290 (1567)
T ss_pred CcCceeehhhhhcccHHHHHHHHHHhH
Confidence 9888888844 3333333334444443
No 187
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.50 E-value=0.0022 Score=81.52 Aligned_cols=69 Identities=16% Similarity=0.007 Sum_probs=56.9
Q ss_pred CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEccccCC
Q 001047 242 REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316 (1174)
Q Consensus 242 ~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n 316 (1174)
....|++.||.+|.+-|.. +...+..+..|||||||++.+..-...+-.+.+.-++..-+.+|||.|..
T Consensus 6 ~~ggi~~~T~rIl~~DlL~------~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLT------GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred hcCCEEEEechhhHhHHhc------CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 3568999999999876665 56778899999999999998776666677777777777889999999863
No 188
>PRK06526 transposase; Provisional
Probab=97.41 E-value=0.0017 Score=71.91 Aligned_cols=108 Identities=16% Similarity=0.205 Sum_probs=63.8
Q ss_pred HHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEE
Q 001047 169 EAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILI 248 (1174)
Q Consensus 169 ~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV 248 (1174)
..+..+.+++++||+|+|||..+..........|.+++|+... .|+++. ..... .
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~-~l~~~l----~~~~~--------------~------ 147 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA-QWVARL----AAAHH--------------A------ 147 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH-HHHHHH----HHHHh--------------c------
Confidence 4455678999999999999998887777777778888775442 344433 22100 0
Q ss_pred EcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCc-HHHHHHHHHHCCCCccEEEEcccc
Q 001047 249 MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISR-GTVWEEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 249 ~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~-g~~~e~ii~~l~~~~qiI~LSATl 314 (1174)
.+... .+. .+.++++|||||+|+...... ...+-.++........+|+.|...
T Consensus 148 ~~~~~---~l~----------~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 148 GRLQA---ELV----------KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred CcHHH---HHH----------HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 11111 121 134678999999998753222 223334443322234577777665
No 189
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.38 E-value=0.00031 Score=69.36 Aligned_cols=117 Identities=22% Similarity=0.221 Sum_probs=61.9
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhc-----CCe-EEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcE
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVAN-----QRR-IFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQI 246 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~-----g~r-vlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~I 246 (1174)
+++.++|.||+|+|||.+....+...... ... +.+.+|...-....+..+...++.....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------- 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-------------- 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--------------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--------------
Confidence 34678999999999999887766544331 333 4444554443556666666666532111
Q ss_pred EEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEcccc
Q 001047 247 LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 247 lV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl 314 (1174)
-.|...+.+.+..... -....+|||||+|++. ....++.+........--+.+++|+
T Consensus 69 -~~~~~~l~~~~~~~l~-------~~~~~~lviDe~~~l~---~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 -RQTSDELRSLLIDALD-------RRRVVLLVIDEADHLF---SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp -TS-HHHHHHHHHHHHH-------HCTEEEEEEETTHHHH---THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred -cCCHHHHHHHHHHHHH-------hcCCeEEEEeChHhcC---CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 2234444443332110 1123799999999984 2555555555544433345555664
No 190
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.38 E-value=0.00035 Score=76.26 Aligned_cols=66 Identities=17% Similarity=0.376 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHcCCc-EEEEccCCcchHHHHHHHHHHH--------HhcCCeEEEEcccHHHHHHHHHHHHH
Q 001047 159 RIDKFQRSSIEAFLRGSS-VVVSAPTSSGKTLIAEAAAVAT--------VANQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~-vlv~apTGsGKTlv~~~~il~~--------l~~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
++++.|.+|+..++.... .+|.||.|+|||.+....+... ...+.++++++|+..-+.++...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999887 9999999999997655555444 35678999999999999999999888
No 191
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.18 E-value=0.0032 Score=80.36 Aligned_cols=123 Identities=16% Similarity=0.147 Sum_probs=78.4
Q ss_pred CCCCCCHHHHHHHHHHHcC-CcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEE
Q 001047 156 YDFRIDKFQRSSIEAFLRG-SSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSNQKFREFRETFGDNNVGL 233 (1174)
Q Consensus 156 ~~~~~~~~Q~~ai~~ll~g-~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~l 233 (1174)
..+.+++-|.+|+..+..+ +-++|.++.|+|||.+.-.. ...+ ..|.++++++||--.+..+. +..|..
T Consensus 349 ~~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i-~~~~~~~g~~V~~~ApTg~Aa~~L~----~~~g~~---- 419 (744)
T TIGR02768 349 QHYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAA-REAWEAAGYRVIGAALSGKAAEGLQ----AESGIE---- 419 (744)
T ss_pred ccCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHH-HHHHHhCCCeEEEEeCcHHHHHHHH----hccCCc----
Confidence 3578999999999998874 67899999999999876543 3333 35889999999976555432 222210
Q ss_pred EeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHH-CCCCccEEEEc
Q 001047 234 LTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY-CPKEVQIICLS 311 (1174)
Q Consensus 234 ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~-l~~~~qiI~LS 311 (1174)
-.|...+..-+.. ....+...++||||||-++.... +..++.. .....++|++-
T Consensus 420 --------------a~Ti~~~~~~~~~------~~~~~~~~~llIvDEasMv~~~~----~~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 420 --------------SRTLASLEYAWAN------GRDLLSDKDVLVIDEAGMVGSRQ----MARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred --------------eeeHHHHHhhhcc------CcccCCCCcEEEEECcccCCHHH----HHHHHHHHHhcCCEEEEEC
Confidence 1233333211111 22345688999999999986433 3344442 23466676664
No 192
>PRK08181 transposase; Validated
Probab=97.09 E-value=0.0063 Score=67.86 Aligned_cols=116 Identities=21% Similarity=0.293 Sum_probs=68.8
Q ss_pred CCHHHHHHHH----HHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEe
Q 001047 160 IDKFQRSSIE----AFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLT 235 (1174)
Q Consensus 160 ~~~~Q~~ai~----~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~llt 235 (1174)
+++.|..++. .+..++++++.||+|+|||..+.....+.+.+|.+++|+. ...|..+.... ..+
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-~~~L~~~l~~a----~~~------- 155 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-TTDLVQKLQVA----RRE------- 155 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-HHHHHHHHHHH----HhC-------
Confidence 4567777663 3457789999999999999887766666666787777764 34555544321 100
Q ss_pred CCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcH-HHHHHHHHHCCCCccEEEEccc
Q 001047 236 GDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRG-TVWEEIIIYCPKEVQIICLSAT 313 (1174)
Q Consensus 236 Gd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g-~~~e~ii~~l~~~~qiI~LSAT 313 (1174)
.+.+.+.+. +.++++|||||.++....... ..+-+++........+|+.|-.
T Consensus 156 -------------~~~~~~l~~-------------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 156 -------------LQLESAIAK-------------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred -------------CcHHHHHHH-------------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 122222222 346889999999987543222 2334444433223345554444
No 193
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.0066 Score=71.05 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=74.3
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHh----cCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEE
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVA----NQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILI 248 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~----~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV 248 (1174)
..+++.||||+|||++....+..... .+.++.++. +.|.-+..+.+.+.+.+|- .+ .++
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgv-pv--------------~~~ 239 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGI-PV--------------KAI 239 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCc-ce--------------Eee
Confidence 57889999999999887655443321 345554443 4466666556666664442 12 122
Q ss_pred EcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCC-cHHHHHHHHHHCCCC-ccEEEEccccCChHHHHHHHhc
Q 001047 249 MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDIS-RGTVWEEIIIYCPKE-VQIICLSATVANADELAGWIGQ 326 (1174)
Q Consensus 249 ~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~-~g~~~e~ii~~l~~~-~qiI~LSATl~n~~~~~~~l~~ 326 (1174)
.++..+...+.. +.+.++||||++.+..... .-..+..++....+. -.++.||||.. ..++.+.+..
T Consensus 240 ~~~~~l~~~L~~----------~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~-~~~~~~~~~~ 308 (388)
T PRK12723 240 ESFKDLKEEITQ----------SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK-TSDVKEIFHQ 308 (388)
T ss_pred CcHHHHHHHHHH----------hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHHHHHHHHH
Confidence 345556555442 3578999999999875211 112333344444333 46789999974 5555555543
No 194
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.04 E-value=0.0054 Score=61.03 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=26.8
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Pt 211 (1174)
++.+++.||+|+|||..+...+-.....+..++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 57899999999999987665554443445566666543
No 195
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.99 E-value=0.0074 Score=78.17 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=80.2
Q ss_pred CCCCCCHHHHHHHHHHHcCC-cEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEE
Q 001047 156 YDFRIDKFQRSSIEAFLRGS-SVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKFREFRETFGDNNVGL 233 (1174)
Q Consensus 156 ~~~~~~~~Q~~ai~~ll~g~-~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~l 233 (1174)
.++.+++-|.+|+..++.++ -++|.++.|+|||++. -++...+. .|.+++.++||---+... .+..| +
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~~G~~V~~~ApTGkAA~~L----~e~tG-----i 412 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEAAGYEVRGAALSGIAAENL----EGGSG-----I 412 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHHcCCeEEEecCcHHHHHHH----hhccC-----c
Confidence 35789999999999998864 5789999999999874 34444444 588999999997655433 22111 1
Q ss_pred EeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC-CCCccEEEEcc
Q 001047 234 LTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC-PKEVQIICLSA 312 (1174)
Q Consensus 234 ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l-~~~~qiI~LSA 312 (1174)
--.|...|..-... +...+...++||||||-++... .+..++... +...++|++-=
T Consensus 413 -------------~a~TI~sll~~~~~------~~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~~~garvVLVGD 469 (988)
T PRK13889 413 -------------ASRTIASLEHGWGQ------GRDLLTSRDVLVIDEAGMVGTR----QLERVLSHAADAGAKVVLVGD 469 (988)
T ss_pred -------------chhhHHHHHhhhcc------cccccccCcEEEEECcccCCHH----HHHHHHHhhhhCCCEEEEECC
Confidence 01243443221111 2334567889999999988633 344555433 45677777753
Q ss_pred c
Q 001047 313 T 313 (1174)
Q Consensus 313 T 313 (1174)
+
T Consensus 470 ~ 470 (988)
T PRK13889 470 P 470 (988)
T ss_pred H
Confidence 3
No 196
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.93 E-value=0.0031 Score=77.49 Aligned_cols=74 Identities=20% Similarity=0.312 Sum_probs=53.6
Q ss_pred HHhhcCCCCCCHHHHHHHHHHH----cCCcEEEEccCCcchHHHHHHHH---HHHHh-----------c-----------
Q 001047 151 ELASIYDFRIDKFQRSSIEAFL----RGSSVVVSAPTSSGKTLIAEAAA---VATVA-----------N----------- 201 (1174)
Q Consensus 151 ~l~~~~~~~~~~~Q~~ai~~ll----~g~~vlv~apTGsGKTlv~~~~i---l~~l~-----------~----------- 201 (1174)
.+.-.|+|+|++.|..-+..++ ...+.++..|||+|||+..+-.. .+... .
T Consensus 13 Gv~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~ 92 (945)
T KOG1132|consen 13 GVPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDS 92 (945)
T ss_pred CceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccC
Confidence 4455789999999988776654 55789999999999997654333 23322 0
Q ss_pred -----------------CCeEEEEcccHHHHHHHHHHHHH
Q 001047 202 -----------------QRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 202 -----------------g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
-.+++|-+-|..=..|+.+++++
T Consensus 93 ~g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrr 132 (945)
T KOG1132|consen 93 GGEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRR 132 (945)
T ss_pred CCCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhh
Confidence 01577777777888899999887
No 197
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.87 E-value=0.0029 Score=74.34 Aligned_cols=139 Identities=20% Similarity=0.258 Sum_probs=82.0
Q ss_pred EEccCCcchHHHHHHHHHHHHhcCC-eEEEEcccHHHHHHHHHHHHH------Hh------CCCeE--EEEeCCCCCCCC
Q 001047 179 VSAPTSSGKTLIAEAAAVATVANQR-RIFYTTPLKALSNQKFREFRE------TF------GDNNV--GLLTGDSAINRE 243 (1174)
Q Consensus 179 v~apTGsGKTlv~~~~il~~l~~g~-rvlvl~PtraLa~Q~~~~l~~------~~------g~~~v--~lltGd~~~~~~ 243 (1174)
..+.||||||++..-.|++...+|. ..|+.|..-....-....|.. +| ++.++ --+..=+..+..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd~ 81 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHNDA 81 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCCc
Confidence 3578999999999888999888876 455655544443333222221 11 11111 111111124456
Q ss_pred CcEEEEcHHHHHHHHhcccccccCCCCCCceeEE-EEccccccccC---------CcHHHHHHHHHH---CCCCccEEEE
Q 001047 244 AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVI-VLDEVHYLSDI---------SRGTVWEEIIIY---CPKEVQIICL 310 (1174)
Q Consensus 244 ~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lV-IiDEaH~l~d~---------~~g~~~e~ii~~---l~~~~qiI~L 310 (1174)
..|+++|.+.|...+-+....-..-..+.+..+| +-||||++... .--..|+..+.. -+++--++.+
T Consensus 82 iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~lef 161 (812)
T COG3421 82 IEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLEF 161 (812)
T ss_pred eEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeehh
Confidence 7899999999988876654322222334455554 66999999732 223456665432 2445567789
Q ss_pred ccccCCh
Q 001047 311 SATVANA 317 (1174)
Q Consensus 311 SATl~n~ 317 (1174)
|||++..
T Consensus 162 ~at~~k~ 168 (812)
T COG3421 162 SATIPKE 168 (812)
T ss_pred hhcCCcc
Confidence 9998743
No 198
>PRK04296 thymidine kinase; Provisional
Probab=96.82 E-value=0.0051 Score=65.25 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=30.9
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
|.-.++.+|+|+|||+.+.-.+.+....+.+++|+-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3457889999999999888887777778889998866
No 199
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.79 E-value=0.0039 Score=78.14 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=59.9
Q ss_pred CCCCHHHHHHHHHHHcC-CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHH
Q 001047 158 FRIDKFQRSSIEAFLRG-SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRET 225 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g-~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~ 225 (1174)
..+++.|..|+..++.. ..++|.||+|+|||.+....+.+.+..|.+|++++||..-+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 45799999999998876 678899999999998887777777788899999999999999999988773
No 200
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.77 E-value=0.0044 Score=64.27 Aligned_cols=123 Identities=20% Similarity=0.230 Sum_probs=76.9
Q ss_pred HHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHH
Q 001047 436 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKS 515 (1174)
Q Consensus 436 l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~ 515 (1174)
+.....+.++||++|.+..+.+...+..... ..++.++.. ....+.
T Consensus 4 l~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~--------------------------------~~~~~v~~q--~~~~~~ 49 (167)
T PF13307_consen 4 LISAVPGGVLVFFPSYRRLEKVYERLKERLE--------------------------------EKGIPVFVQ--GSKSRD 49 (167)
T ss_dssp HHHCCSSEEEEEESSHHHHHHHHTT-TSS-E---------------------------------ETSCEEES--TCCHHH
T ss_pred HHhcCCCCEEEEeCCHHHHHHHHHHHHhhcc--------------------------------cccceeeec--CcchHH
Confidence 3445568999999999999888877753221 112334443 366788
Q ss_pred HHHHHHhcCCceEEEech--hhhhcCCcCC--c-eEEEecccccCC-----------------C----CccccCHHHHHH
Q 001047 516 FIEELFQRGLVKVVFATE--TLAAGINMPA--R-TAVLSSLSKRTA-----------------S----GRIQLTSNELFQ 569 (1174)
Q Consensus 516 ~v~~~F~~G~ikVLVAT~--tla~GIDiP~--v-~vVI~~~~k~~~-----------------~----~~~p~s~~~y~Q 569 (1174)
.+++.|+++.-.||+|+. .+.+|||+|+ + .+||.+.+.-.. . +..+.......|
T Consensus 50 ~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Q 129 (167)
T PF13307_consen 50 ELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQ 129 (167)
T ss_dssp HHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHH
T ss_pred HHHHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhh
Confidence 899999999999999999 9999999995 3 344544331100 0 112334456779
Q ss_pred hhcccCCCCCCCccEEEEEeCCCC
Q 001047 570 MAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 570 r~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
.+||+-|.. +..|.++++.....
T Consensus 130 a~GR~iR~~-~D~g~i~llD~R~~ 152 (167)
T PF13307_consen 130 AIGRLIRSE-DDYGVIILLDSRFL 152 (167)
T ss_dssp HHHCC--ST-T-EEEEEEESGGGG
T ss_pred hcCcceecc-CCcEEEEEEcCccc
Confidence 999999975 35777777765544
No 201
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.76 E-value=0.0028 Score=72.68 Aligned_cols=97 Identities=20% Similarity=0.181 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcC----CeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEe
Q 001047 160 IDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ----RRIFYTTPLKALSNQKFREFRETFGDNNVGLLT 235 (1174)
Q Consensus 160 ~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g----~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~llt 235 (1174)
+++-|.+++.. ....++|.|..|||||.+...-++..+..+ .+++++++|++.+..+..++...++.....- .
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~-~ 77 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQES-S 77 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCC-T
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccc-c
Confidence 57889999988 567999999999999999888777777655 4899999999999999999988655310000 0
Q ss_pred CC----CCCCCCCcEEEEcHHHHHHHHh
Q 001047 236 GD----SAINREAQILIMTTEILRNMLY 259 (1174)
Q Consensus 236 Gd----~~~~~~~~IlV~Tpe~L~~~L~ 259 (1174)
.+ ........+.|+|-..+...+.
T Consensus 78 ~~~~~~~~~~~~~~~~i~T~hsf~~~ll 105 (315)
T PF00580_consen 78 DNERLRRQLSNIDRIYISTFHSFCYRLL 105 (315)
T ss_dssp T-HHHHHHHHHCTTSEEEEHHHHHHHHH
T ss_pred ccccccccccccchheeehhhhhhhhhh
Confidence 00 0000134678888887765443
No 202
>PRK14974 cell division protein FtsY; Provisional
Probab=96.75 E-value=0.018 Score=66.14 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=70.5
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc--cHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP--LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTE 252 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P--traLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe 252 (1174)
.-+++.+++|+|||+.....+......|.+++++.. .|+-+..+.+.+...+|- -++.+.... ++ ..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv---~v~~~~~g~--dp------~~ 209 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGV---KVIKHKYGA--DP------AA 209 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCC---ceecccCCC--CH------HH
Confidence 457889999999998766555444455667766653 344444444555554552 122211110 10 11
Q ss_pred HHHHHHhcccccccCCCCCCceeEEEEccccccc-cCCcHHHHHHHHHHCCCCccEEEEccccCC
Q 001047 253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS-DISRGTVWEEIIIYCPKEVQIICLSATVAN 316 (1174)
Q Consensus 253 ~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~-d~~~g~~~e~ii~~l~~~~qiI~LSATl~n 316 (1174)
.+.+.+... ...+.++||+|.++++. +...-..+..+.....++..++.++||.++
T Consensus 210 v~~~ai~~~--------~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 210 VAYDAIEHA--------KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred HHHHHHHHH--------HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch
Confidence 222222210 12357899999999985 223344555556666677778999999864
No 203
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.74 E-value=0.003 Score=62.31 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=29.8
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~ 216 (1174)
+..+++.||+|+|||..+...+......+..++++.+......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEE 44 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcccc
Confidence 5689999999999999887655443223335788877654433
No 204
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.57 E-value=0.0088 Score=67.10 Aligned_cols=139 Identities=22% Similarity=0.315 Sum_probs=86.1
Q ss_pred hcCCCCC-CHHHHHHHHHHHcCC--cEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHHHhC
Q 001047 154 SIYDFRI-DKFQRSSIEAFLRGS--SVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPLKALSNQKFREFRETFG 227 (1174)
Q Consensus 154 ~~~~~~~-~~~Q~~ai~~ll~g~--~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~PtraLa~Q~~~~l~~~~g 227 (1174)
+.++..| +-.|.-|+..++... -|.+.++-|||||+.++.+.++.... -.++|+.-|+..+-.
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~----------- 290 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGE----------- 290 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccc-----------
Confidence 4455554 457888999988763 56788999999999998887766542 348899888865542
Q ss_pred CCeEEEEeCCCCCC---------CC----CcEEEEcHHHHHHHHhcccc------cccCCCCCCceeEEEEccccccccC
Q 001047 228 DNNVGLLTGDSAIN---------RE----AQILIMTTEILRNMLYQSVG------MVSSESGLFDVDVIVLDEVHYLSDI 288 (1174)
Q Consensus 228 ~~~v~lltGd~~~~---------~~----~~IlV~Tpe~L~~~L~~~~~------~~~~~~~l~~v~lVIiDEaH~l~d~ 288 (1174)
.+|.+.|..... .+ ...-=|+.+.|..++.+..- ++++.. + .=.+||||||+.+.
T Consensus 291 --dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRS-l-~~~FiIIDEaQNLT-- 364 (436)
T COG1875 291 --DIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRS-L-PDSFIIIDEAQNLT-- 364 (436)
T ss_pred --ccCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccc-c-ccceEEEehhhccC--
Confidence 244444432210 00 00111234555555443211 111111 1 12589999999985
Q ss_pred CcHHHHHHHHHHCCCCccEEEEc
Q 001047 289 SRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 289 ~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
...+.-++.++.++.++|++.
T Consensus 365 --pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 --PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred --HHHHHHHHHhccCCCEEEEcC
Confidence 566778888999888888764
No 205
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.035 Score=64.24 Aligned_cols=125 Identities=17% Similarity=0.212 Sum_probs=71.6
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEE-EEcH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL-IMTT 251 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~Il-V~Tp 251 (1174)
+.+++.||||+|||+.....+......|.++.++. |-|.-+.++...+.+..+ .+++ +.+|
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lg----------------ipv~v~~d~ 305 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG----------------FEVIAVRDE 305 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcC----------------CcEEecCCH
Confidence 57889999999999887766665556676665554 344333333334443322 2222 3467
Q ss_pred HHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHH---HHHCCCCccEEEEccccCChHHHHHHHh
Q 001047 252 EILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGWIG 325 (1174)
Q Consensus 252 e~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~i---i~~l~~~~qiI~LSATl~n~~~~~~~l~ 325 (1174)
..+.+.+... ....++++|+||-+=+... -...+.++ +....+..-++.+|||.. ..++.+.+.
T Consensus 306 ~~L~~aL~~l-------k~~~~~DvVLIDTaGRs~k--d~~lm~EL~~~lk~~~PdevlLVLsATtk-~~d~~~i~~ 372 (436)
T PRK11889 306 AAMTRALTYF-------KEEARVDYILIDTAGKNYR--ASETVEEMIETMGQVEPDYICLTLSASMK-SKDMIEIIT 372 (436)
T ss_pred HHHHHHHHHH-------HhccCCCEEEEeCccccCc--CHHHHHHHHHHHhhcCCCeEEEEECCccC-hHHHHHHHH
Confidence 7777666431 0112589999999866432 12233333 333334444667999864 444444443
No 206
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.54 E-value=0.009 Score=74.22 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=81.7
Q ss_pred CCCCHHHHHHHHHHHcCC-cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEe-
Q 001047 158 FRIDKFQRSSIEAFLRGS-SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLT- 235 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g~-~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~llt- 235 (1174)
..++.-|++|+..++.-+ ..+|.|.+|+|||......|--.+..|++||.++=|..-+..+.-.++. ++ ++++.
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~-~~---i~~lRL 743 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKG-FG---IYILRL 743 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhc-cC---cceeec
Confidence 468889999998877665 5789999999999887777666667899999999999988888888776 22 22221
Q ss_pred ----------------CCCC---------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 236 ----------------GDSA---------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 236 ----------------Gd~~---------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
.+.+ .-..+.||.+|==-+...|+ ..+.+++.|||||-.+.
T Consensus 744 G~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----------~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 744 GSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----------VNRQFDYCIIDEASQIL 809 (1100)
T ss_pred CCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----------hccccCEEEEccccccc
Confidence 1111 11356677777433333332 23579999999998875
No 207
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.53 E-value=0.0083 Score=70.45 Aligned_cols=108 Identities=19% Similarity=0.321 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHH------HcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH--HHHHHHHhCCCe
Q 001047 159 RIDKFQRSSIEAF------LRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQK--FREFRETFGDNN 230 (1174)
Q Consensus 159 ~~~~~Q~~ai~~l------l~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~--~~~l~~~~g~~~ 230 (1174)
++++-|+.++..+ ..+.+++|.|+-|+|||.+.-..+-..-..+..+++++||-.-|..+ -..+...|+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~--- 77 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFG--- 77 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcC---
Confidence 3678899998888 67789999999999999887554433333567899999997666554 223333333
Q ss_pred EEEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccccc
Q 001047 231 VGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287 (1174)
Q Consensus 231 v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d 287 (1174)
+++-. .....+ .+..... ....+..+++||+||+=++..
T Consensus 78 i~~~~-----~~~~~~---~~~~~~~----------~~~~l~~~~~lIiDEism~~~ 116 (364)
T PF05970_consen 78 IPINN-----NEKSQC---KISKNSR----------LRERLRKADVLIIDEISMVSA 116 (364)
T ss_pred ccccc-----cccccc---cccccch----------hhhhhhhheeeecccccchhH
Confidence 11100 011111 1111111 123467899999999988764
No 208
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.53 E-value=0.03 Score=66.84 Aligned_cols=126 Identities=21% Similarity=0.237 Sum_probs=71.0
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHH--hcCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEE
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATV--ANQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIM 249 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l--~~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~ 249 (1174)
++.+++.+|||+|||+.....+.... ..+.+|.++. |.|.-+.++...+.+.++ ..+ ..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~-vp~--------------~~~~ 285 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMG-IPV--------------EVVY 285 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhC-Cce--------------EccC
Confidence 56789999999999987665554443 3455665543 344444444444444333 111 1224
Q ss_pred cHHHHHHHHhcccccccCCCCCCceeEEEEccccccccC-CcHHHHHHHHHHC-CCCccEEEEccccCChHHHHHHHh
Q 001047 250 TTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI-SRGTVWEEIIIYC-PKEVQIICLSATVANADELAGWIG 325 (1174)
Q Consensus 250 Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~-~~g~~~e~ii~~l-~~~~qiI~LSATl~n~~~~~~~l~ 325 (1174)
++..+...+.. +.+.++||||-+-+.... .....+..++... .+...++.+|||. ...++.+.+.
T Consensus 286 ~~~~l~~~l~~----------~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~-~~~~l~~~~~ 352 (424)
T PRK05703 286 DPKELAKALEQ----------LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATT-KYEDLKDIYK 352 (424)
T ss_pred CHHhHHHHHHH----------hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCC-CHHHHHHHHH
Confidence 55555555543 346899999999764321 1223344444422 2334578899997 4455544443
No 209
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.51 E-value=0.027 Score=73.60 Aligned_cols=124 Identities=17% Similarity=0.136 Sum_probs=79.8
Q ss_pred CCCCCHHHHHHHHHHHc-CCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEE
Q 001047 157 DFRIDKFQRSSIEAFLR-GSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLL 234 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~ll~-g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ll 234 (1174)
.+.+++-|.+|+..+.. ++-++|.|+-|+|||++.-.. ...+ ..|.+++.++||-.-+.. +.+..|- .
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~-~~~~e~~G~~V~g~ApTgkAA~~----L~e~~Gi-~---- 448 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAA-REAWEAAGYRVVGGALAGKAAEG----LEKEAGI-Q---- 448 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHH-HHHHHHcCCeEEEEcCcHHHHHH----HHHhhCC-C----
Confidence 47899999999998764 467889999999999876543 3333 468899999998665544 3332231 1
Q ss_pred eCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCC-CCccEEEEccc
Q 001047 235 TGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP-KEVQIICLSAT 313 (1174)
Q Consensus 235 tGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~-~~~qiI~LSAT 313 (1174)
-.|...+...... +...+..-++||||||.++.. ..+..++...+ .+.++|++-=+
T Consensus 449 -------------a~TIas~ll~~~~------~~~~l~~~~vlVIDEAsMv~~----~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 449 -------------SRTLSSWELRWNQ------GRDQLDNKTVFVLDEAGMVAS----RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred -------------eeeHHHHHhhhcc------CccCCCCCcEEEEECcccCCH----HHHHHHHHHHHhcCCEEEEECCH
Confidence 1233333211111 223466778999999998753 33445555554 46777777533
No 210
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.46 E-value=0.044 Score=60.26 Aligned_cols=126 Identities=18% Similarity=0.273 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHc-------C-CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEE
Q 001047 161 DKFQRSSIEAFLR-------G-SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232 (1174)
Q Consensus 161 ~~~Q~~ai~~ll~-------g-~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ 232 (1174)
++.|..++..+.+ + ..+++.+++|+|||..+...+......|..++|+ +... +...++..|..
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i-t~~~----l~~~l~~~~~~---- 148 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII-TVAD----IMSAMKDTFSN---- 148 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE-EHHH----HHHHHHHHHhh----
Confidence 3456666655442 1 4789999999999988776555555667777776 3333 33344443311
Q ss_pred EEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHH-HHHHHHHH-CCCCccEEEE
Q 001047 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT-VWEEIIIY-CPKEVQIICL 310 (1174)
Q Consensus 233 lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~-~~e~ii~~-l~~~~qiI~L 310 (1174)
. + .+.+.+.+. +.++++|||||++......+.. .+..++.. ......+|+.
T Consensus 149 ---~------~-----~~~~~~l~~-------------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiit 201 (244)
T PRK07952 149 ---S------E-----TSEEQLLND-------------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGML 201 (244)
T ss_pred ---c------c-----ccHHHHHHH-------------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEe
Confidence 0 0 133333332 3478999999999876443332 34445443 2223445555
Q ss_pred ccccCChHHHHHHH
Q 001047 311 SATVANADELAGWI 324 (1174)
Q Consensus 311 SATl~n~~~~~~~l 324 (1174)
|-- +.+++...+
T Consensus 202 SNl--~~~~l~~~~ 213 (244)
T PRK07952 202 TNS--NMEEMTKLL 213 (244)
T ss_pred CCC--CHHHHHHHh
Confidence 433 345555444
No 211
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.43 E-value=0.033 Score=59.30 Aligned_cols=122 Identities=16% Similarity=0.199 Sum_probs=73.7
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEI 253 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~ 253 (1174)
.++++||||+|||+...-.+.....++.++.+++ ..|.=+.++.+.+.+.++ +-++.-....+ ..+.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~---vp~~~~~~~~~--------~~~~ 71 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILG---VPFYVARTESD--------PAEI 71 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT---EEEEESSTTSC--------HHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhc---cccchhhcchh--------hHHH
Confidence 4788999999999887666665555566665554 467778888888888776 33332111100 1223
Q ss_pred HHHHHhcccccccCCCCCCceeEEEEcccccccc-CCcHHHHHHHHHHCCCCccEEEEccccCC
Q 001047 254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD-ISRGTVWEEIIIYCPKEVQIICLSATVAN 316 (1174)
Q Consensus 254 L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d-~~~g~~~e~ii~~l~~~~qiI~LSATl~n 316 (1174)
+...+... ..+++++|+||=+-+... ...-..+..++....+.--++.+|||...
T Consensus 72 ~~~~l~~~--------~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~ 127 (196)
T PF00448_consen 72 AREALEKF--------RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ 127 (196)
T ss_dssp HHHHHHHH--------HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG
T ss_pred HHHHHHHH--------hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh
Confidence 33444321 123689999999977532 12334555556666666678899999853
No 212
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.025 Score=65.72 Aligned_cols=115 Identities=20% Similarity=0.242 Sum_probs=65.9
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHh-cC-CeEEEEc-c-cHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEE
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVA-NQ-RRIFYTT-P-LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILI 248 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~-~g-~rvlvl~-P-traLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV 248 (1174)
+|..+++.+|||+|||+.....+..... .| .++.++. - .|.-+.++.+.+.+.+|- .+ ..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv-~~--------------~~~ 200 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV-PV--------------HAV 200 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCC-ce--------------Eec
Confidence 4578899999999999887766655443 34 3544443 2 234455566666665552 11 123
Q ss_pred EcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC----CCCccEEEEccccC
Q 001047 249 MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC----PKEVQIICLSATVA 315 (1174)
Q Consensus 249 ~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l----~~~~qiI~LSATl~ 315 (1174)
.+++.+...+.. +.+.++|+||.+=+.. +...+.+.+..+ .+.-.++.+|||..
T Consensus 201 ~~~~~l~~~l~~----------l~~~DlVLIDTaG~~~---~d~~l~e~La~L~~~~~~~~~lLVLsAts~ 258 (374)
T PRK14722 201 KDGGDLQLALAE----------LRNKHMVLIDTIGMSQ---RDRTVSDQIAMLHGADTPVQRLLLLNATSH 258 (374)
T ss_pred CCcccHHHHHHH----------hcCCCEEEEcCCCCCc---ccHHHHHHHHHHhccCCCCeEEEEecCccC
Confidence 344444444432 4467999999997642 222222322222 22345888999974
No 213
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.32 E-value=0.086 Score=64.56 Aligned_cols=167 Identities=13% Similarity=0.178 Sum_probs=100.9
Q ss_pred CCcCChHHHhhcCCCCCCHHHHHHHHHHH---cCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHH
Q 001047 144 NEMIDVDELASIYDFRIDKFQRSSIEAFL---RGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKF 219 (1174)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll---~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~ 219 (1174)
......+.+...-|.-++|.=.+=|+.+. +.+-.++.+|=|.|||.+..+.+...+. .|.+++|++|...-+.+++
T Consensus 154 ~~~l~~~~v~~~np~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF 233 (752)
T PHA03333 154 LLGLASPDVVAFNPEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLY 233 (752)
T ss_pred hhccCChhhhhcCcCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHH
Confidence 33344444555555667776666666554 4467889999999999887766554444 6889999999999999999
Q ss_pred HHHHHHhCCC----------eEEEEeCCCC---C-C------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEE
Q 001047 220 REFRETFGDN----------NVGLLTGDSA---I-N------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVL 279 (1174)
Q Consensus 220 ~~l~~~~g~~----------~v~lltGd~~---~-~------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIi 279 (1174)
+++...+... .+.-+.|+.. . . ....|.+++.. .+ ...-..+++||+
T Consensus 234 ~rv~~~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars---------~~----s~RG~~~DLLIV 300 (752)
T PHA03333 234 NRVETVVHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS---------PN----AARGQNPDLVIV 300 (752)
T ss_pred HHHHHHHHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc---------CC----CcCCCCCCEEEE
Confidence 8877765311 1111222110 0 0 01233332221 11 111125689999
Q ss_pred ccccccccCCcHHHHHHHHHHCC-CCccEEEEccccCChHHHHHHHhccc
Q 001047 280 DEVHYLSDISRGTVWEEIIIYCP-KEVQIICLSATVANADELAGWIGQIH 328 (1174)
Q Consensus 280 DEaH~l~d~~~g~~~e~ii~~l~-~~~qiI~LSATl~n~~~~~~~l~~~~ 328 (1174)
|||+.+.+ ..|..++-.+. .+.+++++|-+- .++.+..++..++
T Consensus 301 DEAAfI~~----~~l~aIlP~l~~~~~k~IiISS~~-~~~s~tS~L~nLk 345 (752)
T PHA03333 301 DEAAFVNP----GALLSVLPLMAVKGTKQIHISSPV-DADSWISRVGEVK 345 (752)
T ss_pred ECcccCCH----HHHHHHHHHHccCCCceEEEeCCC-CcchHHHHhhhhc
Confidence 99999865 44555544333 467788888774 3566666666544
No 214
>PRK08116 hypothetical protein; Validated
Probab=96.30 E-value=0.045 Score=61.29 Aligned_cols=60 Identities=17% Similarity=0.239 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHH-----------cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH
Q 001047 158 FRIDKFQRSSIEAFL-----------RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQK 218 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll-----------~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~ 218 (1174)
|..++.+..++..+. .+..+++.|++|+|||..+...+-..+.++..++|+. ...|..++
T Consensus 87 f~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-~~~ll~~i 157 (268)
T PRK08116 87 FLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-FPQLLNRI 157 (268)
T ss_pred ccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHHH
Confidence 335566666554433 1234999999999999888755444445566666654 44555443
No 215
>PRK12377 putative replication protein; Provisional
Probab=96.12 E-value=0.13 Score=56.73 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=31.7
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFR 220 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~ 220 (1174)
.++++.||+|+|||..+...+-....+|..++|+ +...|..++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i-~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV-TVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE-EHHHHHHHHHH
Confidence 5799999999999988766655555666666554 44566665433
No 216
>PRK09183 transposase/IS protein; Provisional
Probab=96.08 E-value=0.19 Score=56.04 Aligned_cols=58 Identities=26% Similarity=0.252 Sum_probs=39.1
Q ss_pred CCHHHHHHHH---HHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH
Q 001047 160 IDKFQRSSIE---AFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQK 218 (1174)
Q Consensus 160 ~~~~Q~~ai~---~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~ 218 (1174)
+..-|...+. .+.++.++++.||+|+|||..+..........|.+++|+. ...|..+.
T Consensus 85 ~~~~~i~~L~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~-~~~l~~~l 145 (259)
T PRK09183 85 APQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-AADLLLQL 145 (259)
T ss_pred CCHHHHHHHhcCCchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-HHHHHHHH
Confidence 3444444443 3567789999999999999887766655566777887764 33454443
No 217
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.08 E-value=0.092 Score=60.74 Aligned_cols=140 Identities=21% Similarity=0.239 Sum_probs=84.8
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHH--hcCCe-EEEEcc-cHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEE
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATV--ANQRR-IFYTTP-LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILI 248 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l--~~g~r-vlvl~P-traLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV 248 (1174)
+++.+.+.||||.|||+...-.+.... ...++ .||+.- .|.=|..+.+.+.+.++- +-.+|
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~v---------------p~~vv 266 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGV---------------PLEVV 266 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCC---------------ceEEe
Confidence 367889999999999976544444333 33333 444443 345555555555555541 23456
Q ss_pred EcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc-cCCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcc
Q 001047 249 MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS-DISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 327 (1174)
Q Consensus 249 ~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~-d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~ 327 (1174)
-+|.-|...+.. +.+.++|.||=+-+=. |...-..+++++....+---.+.||||. ..+++.+-+..
T Consensus 267 ~~~~el~~ai~~----------l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~-K~~dlkei~~~- 334 (407)
T COG1419 267 YSPKELAEAIEA----------LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT-KYEDLKEIIKQ- 334 (407)
T ss_pred cCHHHHHHHHHH----------hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc-chHHHHHHHHH-
Confidence 678777776653 6788999999876521 2222334444555554445578899996 56666665543
Q ss_pred cCceeeecCCCCccccEEeecc
Q 001047 328 HGKTELITSSRRPVPLTWYFST 349 (1174)
Q Consensus 328 ~~~~~~i~~~~rpvpl~~~~~~ 349 (1174)
++.+|+...+..
T Consensus 335 ----------f~~~~i~~~I~T 346 (407)
T COG1419 335 ----------FSLFPIDGLIFT 346 (407)
T ss_pred ----------hccCCcceeEEE
Confidence 556666665543
No 218
>PRK05642 DNA replication initiation factor; Validated
Probab=96.04 E-value=0.029 Score=61.57 Aligned_cols=94 Identities=13% Similarity=0.138 Sum_probs=55.4
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEIL 254 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~L 254 (1174)
..++++||+|+|||-.......+...++.+++|+.. ..+... ...+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~~~~~~---------------------------------~~~~ 91 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-AELLDR---------------------------------GPEL 91 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-HHHHhh---------------------------------hHHH
Confidence 468899999999997755443333445778887664 333221 0112
Q ss_pred HHHHhcccccccCCCCCCceeEEEEccccccccC-CcHHHHHHHHHHCCCCccEEEEccccC
Q 001047 255 RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI-SRGTVWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 255 ~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~-~~g~~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
... +.++++||+|++|.+... .....+-.++..+...-+.+++++|.+
T Consensus 92 ~~~-------------~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 92 LDN-------------LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred HHh-------------hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 221 336689999999988543 222334445544444334567777754
No 219
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.02 E-value=0.019 Score=60.48 Aligned_cols=48 Identities=21% Similarity=0.155 Sum_probs=37.8
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
.++|.||+|+|||..+...+...+.+|.+++|++.. +-..++.+.+..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~~ 48 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAES 48 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHHH
Confidence 378999999999999988888888889999998653 445566555554
No 220
>PRK06921 hypothetical protein; Provisional
Probab=95.94 E-value=0.068 Score=59.78 Aligned_cols=44 Identities=23% Similarity=0.195 Sum_probs=30.5
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhc-CCeEEEEcccHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVAN-QRRIFYTTPLKALSNQ 217 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~-g~rvlvl~PtraLa~Q 217 (1174)
.+.++++.|+||+|||..+...+-..+.+ +..++|+.. ..+..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH-HHHHHH
Confidence 35789999999999998776544444455 677777654 444444
No 221
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.92 E-value=0.041 Score=56.04 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=31.5
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHH
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~ 216 (1174)
++|.||+|+|||..+...+......+..++|+.....+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH
Confidence 6899999999999887777666667888888877655443
No 222
>PRK08727 hypothetical protein; Validated
Probab=95.87 E-value=0.027 Score=61.81 Aligned_cols=35 Identities=29% Similarity=0.322 Sum_probs=27.0
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
+.+++.||+|+|||............++.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 45899999999999877665555556677888865
No 223
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.85 E-value=0.054 Score=59.55 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=27.3
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
..+++.||+|+|||..+.........++.+++|+.-
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 589999999999998776555555556777777654
No 224
>PRK06893 DNA replication initiation factor; Validated
Probab=95.84 E-value=0.024 Score=62.00 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=27.5
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
..+++.||+|+|||..+....-+...++.+++|+.-
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 457899999999998877666666666777777654
No 225
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=95.79 E-value=0.46 Score=57.85 Aligned_cols=90 Identities=13% Similarity=0.039 Sum_probs=63.0
Q ss_pred ecCCCCHHHHHHHHHHHhc--CCc-eEEEechhhhhcCCcCCc-eEEEecccccCCCCccccCHHHHHHhhcccCCCCCC
Q 001047 505 HHAGCLPIWKSFIEELFQR--GLV-KVVFATETLAAGINMPAR-TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580 (1174)
Q Consensus 505 ~Hsgl~~~~R~~v~~~F~~--G~i-kVLVAT~tla~GIDiP~v-~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d 580 (1174)
+.|..+..+|+..++.|.. |.. -+|++|-....|||+=.. .+|| ++..+++.-=.|.+-|.-|.|+.
T Consensus 767 ldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~i---------fda~wnpchdaqavcRvyrYGQ~ 837 (1387)
T KOG1016|consen 767 LDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCII---------FDACWNPCHDAQAVCRVYRYGQQ 837 (1387)
T ss_pred ccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEE---------EEeecCccccchhhhhhhhhcCc
Confidence 3455667799999999987 443 688999999999997443 4444 34455666678999999999998
Q ss_pred CccEEEEE-eCCCCCHHHHHHHhh
Q 001047 581 NRGHVVLV-QTPYEGAEECCKLLF 603 (1174)
Q Consensus 581 ~~G~~ill-~~~~~~~~~~~~~~~ 603 (1174)
+...+|-+ .+...+..-|-+.+.
T Consensus 838 KpcfvYRlVmD~~lEkkIydRQIs 861 (1387)
T KOG1016|consen 838 KPCFVYRLVMDNSLEKKIYDRQIS 861 (1387)
T ss_pred CceeEEeehhhhhhHHHHHHHHHh
Confidence 89888844 444333433444443
No 226
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.76 E-value=0.033 Score=62.49 Aligned_cols=67 Identities=12% Similarity=0.174 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHH----cCC-cEEEEccCCcchHHHHHHHHHHHHhcCC-eEEEEcccHHHHHHHHHHHHHHhC
Q 001047 160 IDKFQRSSIEAFL----RGS-SVVVSAPTSSGKTLIAEAAAVATVANQR-RIFYTTPLKALSNQKFREFRETFG 227 (1174)
Q Consensus 160 ~~~~Q~~ai~~ll----~g~-~vlv~apTGsGKTlv~~~~il~~l~~g~-rvlvl~PtraLa~Q~~~~l~~~~g 227 (1174)
+++.+.+++..+. .+. .+++.||+|+|||+.+.... ..+..+. .+..++++..-..+....+...+|
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~-~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG 96 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLL-KRLDQERVVAAKLVNTRVDAEDLLRMVAADFG 96 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHH-HhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcC
Confidence 4556666776653 333 68899999999998876543 3333222 233334433333455555555554
No 227
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.73 E-value=0.095 Score=57.23 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=27.0
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
++.+++.||+|+|||..+.....+....+..++|+..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 3579999999999998776555555456666666653
No 228
>PHA02533 17 large terminase protein; Provisional
Probab=95.73 E-value=0.1 Score=64.00 Aligned_cols=143 Identities=10% Similarity=0.143 Sum_probs=89.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHH-HHH-hcCCeEEEEcccHHHHHHHHHHHHHHhCCC----
Q 001047 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAV-ATV-ANQRRIFYTTPLKALSNQKFREFRETFGDN---- 229 (1174)
Q Consensus 156 ~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il-~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~---- 229 (1174)
.+|.|.|+|...+..+..++-.++..+=..|||.+....++ ..+ ..+..+++++|++.-|..+++.++..+...
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~ 135 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFL 135 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHh
Confidence 57899999999999887677778889999999988764333 333 456799999999999999988887644321
Q ss_pred eEEEEeC-C--CCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCC--CC
Q 001047 230 NVGLLTG-D--SAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP--KE 304 (1174)
Q Consensus 230 ~v~lltG-d--~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~--~~ 304 (1174)
..++... . .....++.|.+.|... . ...=.+..++|+||+|.+.+ +...|..+.-.+. ..
T Consensus 136 ~~~i~~~~~~~I~l~NGS~I~~lss~~---------~----t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~ 200 (534)
T PHA02533 136 QPGIVEWNKGSIELENGSKIGAYASSP---------D----AVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRS 200 (534)
T ss_pred hcceeecCccEEEeCCCCEEEEEeCCC---------C----ccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCC
Confidence 1111111 1 1112345554544321 0 00012567899999999864 4455655543333 23
Q ss_pred ccEEEEccc
Q 001047 305 VQIICLSAT 313 (1174)
Q Consensus 305 ~qiI~LSAT 313 (1174)
.+++..|.+
T Consensus 201 ~r~iiiSTp 209 (534)
T PHA02533 201 SKIIITSTP 209 (534)
T ss_pred ceEEEEECC
Confidence 456566555
No 229
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.57 E-value=0.16 Score=57.00 Aligned_cols=52 Identities=21% Similarity=0.260 Sum_probs=33.2
Q ss_pred HHcC--CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHH
Q 001047 171 FLRG--SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREF 222 (1174)
Q Consensus 171 ll~g--~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l 222 (1174)
+.++ .++|+.+|.|+|||..+-+.+...-....+.+=++-|.+-.+.+-.-|
T Consensus 157 ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~if 210 (554)
T KOG2028|consen 157 IEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIF 210 (554)
T ss_pred HHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHH
Confidence 4455 489999999999998886655443223345555666665555444333
No 230
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.56 E-value=0.14 Score=59.29 Aligned_cols=128 Identities=14% Similarity=0.149 Sum_probs=71.7
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMT 250 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~T 250 (1174)
.++.+++++|||+|||+.....+.....++.++.++. |.|.=+..+.+.+.+..+ +. -.++.+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lg---vp------------v~~~~d 269 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLD---VE------------LIVATS 269 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCC---CC------------EEecCC
Confidence 3567889999999999887766665556677665554 344433333333333222 11 112246
Q ss_pred HHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHH---HHHCCCCccEEEEccccCChHHHHHHHh
Q 001047 251 TEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGWIG 325 (1174)
Q Consensus 251 pe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~i---i~~l~~~~qiI~LSATl~n~~~~~~~l~ 325 (1174)
|+-+...+... ....+.++|+||=+=+.. .-...+.++ .....++.-++.+|||. ...++.+.+.
T Consensus 270 p~dL~~al~~l-------~~~~~~D~VLIDTAGr~~--~d~~~l~EL~~l~~~~~p~~~~LVLsag~-~~~d~~~i~~ 337 (407)
T PRK12726 270 PAELEEAVQYM-------TYVNCVDHILIDTVGRNY--LAEESVSEISAYTDVVHPDLTCFTFSSGM-KSADVMTILP 337 (407)
T ss_pred HHHHHHHHHHH-------HhcCCCCEEEEECCCCCc--cCHHHHHHHHHHhhccCCceEEEECCCcc-cHHHHHHHHH
Confidence 77776655421 112468999999886643 112233333 33334444466788875 4445555543
No 231
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.56 E-value=0.21 Score=60.24 Aligned_cols=126 Identities=17% Similarity=0.233 Sum_probs=67.3
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhc--CCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEE
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVAN--QRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILI 248 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~--g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV 248 (1174)
.|+.++++||||+|||+.+...+...... +.++.++. +.+..+.++...+...++ +.+. .+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLg---v~v~------------~a 413 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLG---IAVH------------EA 413 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccC---ceeE------------ec
Confidence 46788899999999998876555444333 34554443 335444433333333222 1111 11
Q ss_pred EcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccC-CcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHh
Q 001047 249 MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI-SRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIG 325 (1174)
Q Consensus 249 ~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~-~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~ 325 (1174)
.+++.+...+.. +.+.++||||.+-..... .....+..+. .......++.++++.. ..++.+.+.
T Consensus 414 ~d~~~L~~aL~~----------l~~~DLVLIDTaG~s~~D~~l~eeL~~L~-aa~~~a~lLVLpAtss-~~Dl~eii~ 479 (559)
T PRK12727 414 DSAESLLDLLER----------LRDYKLVLIDTAGMGQRDRALAAQLNWLR-AARQVTSLLVLPANAH-FSDLDEVVR 479 (559)
T ss_pred CcHHHHHHHHHH----------hccCCEEEecCCCcchhhHHHHHHHHHHH-HhhcCCcEEEEECCCC-hhHHHHHHH
Confidence 245556666543 346899999999765311 1111222222 2223456888888863 444444443
No 232
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.52 E-value=0.17 Score=58.35 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=32.8
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQK 218 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~ 218 (1174)
.+.++++.||||+|||..+...+...+.+|..|+|+. ...|..+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t-~~~l~~~l 226 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT-ADELIEIL 226 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE-HHHHHHHH
Confidence 3579999999999999877766666666777777754 34555444
No 233
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.47 E-value=0.091 Score=58.34 Aligned_cols=91 Identities=23% Similarity=0.296 Sum_probs=58.5
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTE 252 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe 252 (1174)
+++++++.||+|+|||..+.....+.+..|.+|+ .+++.+|+.++...+.. |. ..+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~-f~~~~el~~~Lk~~~~~--~~---------------------~~~ 159 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVL-FITAPDLLSKLKAAFDE--GR---------------------LEE 159 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEE-EEEHHHHHHHHHHHHhc--Cc---------------------hHH
Confidence 6679999999999999988766666664455554 46677777766555443 10 122
Q ss_pred HHHHHHhcccccccCCCCCCceeEEEEccccccccCC-cHHHHHHHHHH
Q 001047 253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDIS-RGTVWEEIIIY 300 (1174)
Q Consensus 253 ~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~-~g~~~e~ii~~ 300 (1174)
.|.+. +.+++++||||.=+..... ....|..+|..
T Consensus 160 ~l~~~-------------l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~ 195 (254)
T COG1484 160 KLLRE-------------LKKVDLLIIDDIGYEPFSQEEADLLFQLISR 195 (254)
T ss_pred HHHHH-------------hhcCCEEEEecccCccCCHHHHHHHHHHHHH
Confidence 33332 4579999999998865332 23444445443
No 234
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.44 E-value=0.062 Score=68.27 Aligned_cols=88 Identities=19% Similarity=0.193 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc-C---CeEEEEcccHHHHHHHHHHHHHHhCCCeEEEE
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN-Q---RRIFYTTPLKALSNQKFREFRETFGDNNVGLL 234 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~-g---~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ll 234 (1174)
.+++-|++|+.. ....++|.|..|||||.+...-+...+.. + .++++++.|+..|.++..++.+.+|..
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~----- 74 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRK----- 74 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcc-----
Confidence 478999999875 34688999999999999988777777753 3 489999999999999999998876631
Q ss_pred eCCCCCCCCCcEEEEcHHHHHHHHhc
Q 001047 235 TGDSAINREAQILIMTTEILRNMLYQ 260 (1174)
Q Consensus 235 tGd~~~~~~~~IlV~Tpe~L~~~L~~ 260 (1174)
....+.|+|...+...+.+
T Consensus 75 -------~~~~v~i~TfHS~~~~iLr 93 (672)
T PRK10919 75 -------EARGLMISTFHTLGLDIIK 93 (672)
T ss_pred -------cccCcEEEcHHHHHHHHHH
Confidence 1235789999988755543
No 235
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.42 E-value=0.057 Score=58.82 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=25.6
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
+..+++.||+|+|||..+..........+..++|+
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i 72 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYL 72 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 46899999999999988876655544455555554
No 236
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.42 E-value=0.065 Score=64.92 Aligned_cols=75 Identities=20% Similarity=0.388 Sum_probs=47.0
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVAN--QRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTE 252 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~--g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe 252 (1174)
+.+++.||+|+|||..+....-+...+ +.+++|+.. ..+.++....+.. .+.+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~-~~~~~~~~~~~~~------------------------~~~~ 203 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS-EKFTNDFVNALRN------------------------NTME 203 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHc------------------------CcHH
Confidence 468999999999998776554444443 567777644 4555544333321 0123
Q ss_pred HHHHHHhcccccccCCCCCCceeEEEEcccccccc
Q 001047 253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287 (1174)
Q Consensus 253 ~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d 287 (1174)
.+... +.++++|||||+|.+..
T Consensus 204 ~~~~~-------------~~~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 204 EFKEK-------------YRSVDVLLIDDIQFLAG 225 (450)
T ss_pred HHHHH-------------HhcCCEEEEehhhhhcC
Confidence 33332 23678999999999864
No 237
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.41 E-value=0.25 Score=58.07 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=66.9
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHH-HhcCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEc
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVAT-VANQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMT 250 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~-l~~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~T 250 (1174)
+..+++++|||+|||+.+...+... ...|.++.++. +.|+.+..+...+.+..|- .+ . .+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgv-p~--~------------~~~~ 287 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGM-PF--Y------------PVKD 287 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCC-Ce--e------------ehHH
Confidence 3457899999999999887776544 45566665543 4567676666666554331 11 1 0111
Q ss_pred HHHHHHHHhcccccccCCCCCCceeEEEEccccccc-cCCcHHHHHHHHHHCC---CCccEEEEccccCC
Q 001047 251 TEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS-DISRGTVWEEIIIYCP---KEVQIICLSATVAN 316 (1174)
Q Consensus 251 pe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~-d~~~g~~~e~ii~~l~---~~~qiI~LSATl~n 316 (1174)
+..+...+. -.+.++||||=+-+.. +...-..+..++.... +.-.++.||||..+
T Consensus 288 ~~~l~~~l~-----------~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~ 346 (432)
T PRK12724 288 IKKFKETLA-----------RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY 346 (432)
T ss_pred HHHHHHHHH-----------hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH
Confidence 223333332 1467899999876653 2222223344444331 23457889999853
No 238
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.34 E-value=0.084 Score=64.39 Aligned_cols=139 Identities=17% Similarity=0.301 Sum_probs=88.1
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHHhC----CCeEEEEeCCCCC-----C
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATV--ANQRRIFYTTPLKALSNQKFREFRETFG----DNNVGLLTGDSAI-----N 241 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l--~~g~rvlvl~PtraLa~Q~~~~l~~~~g----~~~v~lltGd~~~-----~ 241 (1174)
+.+-.++..|==.|||.+....+...+ ..|.+++|++|.+..++..++++...+. ...+..+.|+ .+ +
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I~i~f~n 331 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TISFSFPD 331 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EEEEEecC
Confidence 447789999999999987663333233 3689999999999999999999887543 3234444453 22 1
Q ss_pred CC-CcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHH-CCCCccEEEEccccCChHH
Q 001047 242 RE-AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY-CPKEVQIICLSATVANADE 319 (1174)
Q Consensus 242 ~~-~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~-l~~~~qiI~LSATl~n~~~ 319 (1174)
.. ..|.+.+. + + . +...=..++++|+|||+.+.+. .|..++-. ...+.++|++|-|-+ .+.
T Consensus 332 G~kstI~FaSa---r----n-t----NsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~Ns-~~~ 394 (738)
T PHA03368 332 GSRSTIVFASS---H----N-T----NGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTNT-GKA 394 (738)
T ss_pred CCccEEEEEec---c----C-C----CCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCCC-Ccc
Confidence 11 24555432 1 0 0 0111137899999999998753 34444322 234789999999853 345
Q ss_pred HHHHHhcccC
Q 001047 320 LAGWIGQIHG 329 (1174)
Q Consensus 320 ~~~~l~~~~~ 329 (1174)
-..||..+++
T Consensus 395 sTSFL~nLk~ 404 (738)
T PHA03368 395 STSFLYNLKG 404 (738)
T ss_pred chHHHHhhcC
Confidence 5566665544
No 239
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.34 E-value=0.034 Score=66.36 Aligned_cols=66 Identities=12% Similarity=0.263 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHH
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
+++.-|..|+..+++..-.||++|.|+|||++....+++.+. .+..+|+++|...-+.|.++.+.+
T Consensus 410 kLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHh
Confidence 478899999999999999999999999999987777766655 456999999999999999999887
No 240
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.27 E-value=0.31 Score=54.73 Aligned_cols=121 Identities=13% Similarity=0.244 Sum_probs=70.5
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcH-
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTT- 251 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tp- 251 (1174)
+.+++++|+|+|||+...-.+......|.+++++. +.|.-+.++...+.+..+ +.++......+ |
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~---i~~~~~~~~~d---------p~ 140 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLG---VDVIKQKEGAD---------PA 140 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCC---eEEEeCCCCCC---------HH
Confidence 56778899999999877666655556677777665 456666666666666555 44443322111 2
Q ss_pred HHHHHHHhcccccccCCCCCCceeEEEEcccccccc-CCcHHHHHHHHHHCC------CCccEEEEccccC
Q 001047 252 EILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD-ISRGTVWEEIIIYCP------KEVQIICLSATVA 315 (1174)
Q Consensus 252 e~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d-~~~g~~~e~ii~~l~------~~~qiI~LSATl~ 315 (1174)
......+.. ....++++||+|=+-++.. ...-..+..+....+ ++-.++.++||..
T Consensus 141 ~~~~~~l~~--------~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~ 203 (272)
T TIGR00064 141 AVAFDAIQK--------AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG 203 (272)
T ss_pred HHHHHHHHH--------HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC
Confidence 112222211 0124689999999877642 112223344444433 5566889999964
No 241
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.26 E-value=0.083 Score=59.73 Aligned_cols=84 Identities=23% Similarity=0.343 Sum_probs=49.5
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhc-C-CeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEE
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVAN-Q-RRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIM 249 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~-g-~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~ 249 (1174)
++.+++++|||+|||+.....+.....+ | .+|.++. |.+.-+.++...+.+.++- .+ ..+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~-p~--------------~~~~ 258 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGV-PV--------------KVAR 258 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCC-ce--------------eccC
Confidence 4578899999999998776655544443 4 5555443 3344444444555554331 11 1123
Q ss_pred cHHHHHHHHhcccccccCCCCCCceeEEEEccc
Q 001047 250 TTEILRNMLYQSVGMVSSESGLFDVDVIVLDEV 282 (1174)
Q Consensus 250 Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEa 282 (1174)
++..+...+.. +.+.++|+||.+
T Consensus 259 ~~~~l~~~l~~----------~~~~d~vliDt~ 281 (282)
T TIGR03499 259 DPKELRKALDR----------LRDKDLILIDTA 281 (282)
T ss_pred CHHHHHHHHHH----------ccCCCEEEEeCC
Confidence 55566665543 346799999975
No 242
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.24 E-value=0.3 Score=68.74 Aligned_cols=66 Identities=11% Similarity=0.145 Sum_probs=50.1
Q ss_pred cCCCCCCHHHHHHHHHHHcC--CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHH
Q 001047 155 IYDFRIDKFQRSSIEAFLRG--SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFR 220 (1174)
Q Consensus 155 ~~~~~~~~~Q~~ai~~ll~g--~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~ 220 (1174)
...+.+++-|.+|+..++.+ +-.+|.++.|+|||.+.-..+...-..|.+|+.++||-.-+.+..+
T Consensus 425 ~~~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e 492 (1960)
T TIGR02760 425 LSEFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQ 492 (1960)
T ss_pred cccCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 44678999999999998875 5788999999999987654332222358899999999876655443
No 243
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.20 E-value=0.068 Score=58.99 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=31.0
Q ss_pred CCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEccccC
Q 001047 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 270 ~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
....+..||+||||.|.. .-...+..++...+...++++..--++
T Consensus 126 ~~~~fKiiIlDEcdsmts-daq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTS-DAQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCcceEEEEechhhhhH-HHHHHHHHHHhccccceEEEEEcCChh
Confidence 445678999999999974 233445556666677777777765553
No 244
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.14 E-value=0.23 Score=62.47 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=15.9
Q ss_pred EEEEccCCcchHHHHHHHH
Q 001047 177 VVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~i 195 (1174)
++|.|+||+|||++.-..+
T Consensus 784 LYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4599999999999876654
No 245
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.10 E-value=0.094 Score=62.69 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=27.4
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVAN--QRRIFYTTPLKALSNQ 217 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~--g~rvlvl~PtraLa~Q 217 (1174)
..+++.||+|+|||..+....-+...+ +.+++|+.. ..+.++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~-~~~~~~ 180 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS-EKFTND 180 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH-HHHHHH
Confidence 357899999999998775444333333 567888754 344443
No 246
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.09 E-value=0.1 Score=60.57 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=20.3
Q ss_pred HHcCC--cEEEEccCCcchHHHHHHHHHH
Q 001047 171 FLRGS--SVVVSAPTSSGKTLIAEAAAVA 197 (1174)
Q Consensus 171 ll~g~--~vlv~apTGsGKTlv~~~~il~ 197 (1174)
+..++ .+++.||+|+|||..+...+-.
T Consensus 31 ~~~~~~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 31 VDSPNLPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33444 7999999999999887665443
No 247
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.05 E-value=0.38 Score=53.78 Aligned_cols=126 Identities=17% Similarity=0.149 Sum_probs=71.2
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc--cH-HHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEE-
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP--LK-ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILI- 248 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P--tr-aLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV- 248 (1174)
.+..+++.+|+|+|||..+...+.....++.++.++.- .+ +.+.|+... .+..+ .++..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~-~~~~~----------------~~~~~~ 136 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDY-VKTIG----------------FEVIAV 136 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH-hhhcC----------------ceEEec
Confidence 44688999999999999877665554445566655543 22 455555432 22122 12222
Q ss_pred EcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHH---HHHHCCCCccEEEEccccCChHHHHHHHh
Q 001047 249 MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEE---IIIYCPKEVQIICLSATVANADELAGWIG 325 (1174)
Q Consensus 249 ~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~---ii~~l~~~~qiI~LSATl~n~~~~~~~l~ 325 (1174)
.+++.+.+.+... ....++++||||-+=+... -...+++ ++....+...++.+|||. ...+..+++.
T Consensus 137 ~~~~~l~~~l~~l-------~~~~~~D~ViIDt~Gr~~~--~~~~l~el~~~~~~~~~~~~~LVl~a~~-~~~d~~~~~~ 206 (270)
T PRK06731 137 RDEAAMTRALTYF-------KEEARVDYILIDTAGKNYR--ASETVEEMIETMGQVEPDYICLTLSASM-KSKDMIEIIT 206 (270)
T ss_pred CCHHHHHHHHHHH-------HhcCCCCEEEEECCCCCcC--CHHHHHHHHHHHhhhCCCeEEEEEcCcc-CHHHHHHHHH
Confidence 3566666554321 1123689999999966531 1233333 344444444577899996 3445555544
No 248
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.02 E-value=0.094 Score=66.31 Aligned_cols=90 Identities=20% Similarity=0.161 Sum_probs=69.4
Q ss_pred hhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHHhCC
Q 001047 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN----QRRIFYTTPLKALSNQKFREFRETFGD 228 (1174)
Q Consensus 153 ~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~----g~rvlvl~PtraLa~Q~~~~l~~~~g~ 228 (1174)
...-..++++-|++|+.. ...+++|.|..|||||.+...-+...+.. +.++++++.++..|..+.+++...+|
T Consensus 190 ~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg- 266 (684)
T PRK11054 190 SQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG- 266 (684)
T ss_pred HhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC-
Confidence 333346899999999864 33578999999999999887766555543 34899999999999999999988654
Q ss_pred CeEEEEeCCCCCCCCCcEEEEcHHHHHHHHh
Q 001047 229 NNVGLLTGDSAINREAQILIMTTEILRNMLY 259 (1174)
Q Consensus 229 ~~v~lltGd~~~~~~~~IlV~Tpe~L~~~L~ 259 (1174)
...|.|.|-..|...+.
T Consensus 267 --------------~~~v~v~TFHSlal~Il 283 (684)
T PRK11054 267 --------------TEDITARTFHALALHII 283 (684)
T ss_pred --------------CCCcEEEeHHHHHHHHH
Confidence 14688899988875443
No 249
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.27 Score=57.44 Aligned_cols=104 Identities=21% Similarity=0.233 Sum_probs=56.5
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhc--CCeEEEE-cccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVAN--QRRIFYT-TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTT 251 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~--g~rvlvl-~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tp 251 (1174)
.+++|.|+||+|||.+.-..+-+.... +.-++|+ |..-.=..|++..+...++.. +..-..+.
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~--------------p~~g~~~~ 108 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKV--------------PLTGDSSL 108 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCC--------------CCCCCchH
Confidence 479999999999998876655433322 2224444 333333445566666555411 11112233
Q ss_pred HHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHH
Q 001047 252 EILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY 300 (1174)
Q Consensus 252 e~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~ 300 (1174)
+.+.. +.+. .......-+||+||++.|.+... ..+..++..
T Consensus 109 ~~~~~-l~~~------~~~~~~~~IvvLDEid~L~~~~~-~~LY~L~r~ 149 (366)
T COG1474 109 EILKR-LYDN------LSKKGKTVIVILDEVDALVDKDG-EVLYSLLRA 149 (366)
T ss_pred HHHHH-HHHH------HHhcCCeEEEEEcchhhhccccc-hHHHHHHhh
Confidence 33322 2211 11134567899999999987544 555555543
No 250
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.87 E-value=0.14 Score=52.18 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=72.2
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCC--CCCCCcEEEEcHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSA--INREAQILIMTTEI 253 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~--~~~~~~IlV~Tpe~ 253 (1174)
-+.|..++|.|||.++.-.+++++..|.+|+++.=.|.-...=...+-+.++++ -+...+.. .... + ..+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v--~~~~~g~~~~~~~~-~----~~~~ 76 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNI--EIHRMGRGFFWTTE-N----DEED 76 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCc--EEEECCCCCccCCC-C----hHHH
Confidence 466778889999999999999999999999997666542111111222334543 22222211 1110 0 1111
Q ss_pred HHHHHhcccccccCCCCCCceeEEEEccccccccCCc--HHHHHHHHHHCCCCccEEEEccccC
Q 001047 254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISR--GTVWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 254 L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~--g~~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
.. .................+++||+||+=+..+.+. ...+.+++...|...-+|+.+-.+|
T Consensus 77 ~~-~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 77 IA-AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HH-HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 10 0000000000111235789999999987754322 3345556677777776776666654
No 251
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.78 E-value=0.2 Score=59.72 Aligned_cols=121 Identities=15% Similarity=0.220 Sum_probs=57.9
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhc--CCeEEEEc-ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVAN--QRRIFYTT-PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTT 251 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~--g~rvlvl~-PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tp 251 (1174)
.+++|.||+|+|||.+.-..+-+.-.. +..++++- ....-..+.+..+...++... .. ..+ .+.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-------~~-~~~-----~~~ 122 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHP-------PP-SSG-----LSF 122 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCC-------CC-CCC-----CCH
Confidence 579999999999998876554333222 24555552 221112233444443332210 00 000 123
Q ss_pred HHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHH---CCC-CccEEEEcccc
Q 001047 252 EILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY---CPK-EVQIICLSATV 314 (1174)
Q Consensus 252 e~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~---l~~-~~qiI~LSATl 314 (1174)
+.+...+.... ..-...-+|||||+|.+........+..++.. .+. ++-+|+.+.++
T Consensus 123 ~~~~~~~~~~l------~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 123 DELFDKIAEYL------DERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHHHHHHH------HhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCc
Confidence 33333332210 00124568999999998732223344444432 222 34456665554
No 252
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=94.77 E-value=0.17 Score=64.09 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=81.2
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
.+..+|||..=.+..+-+-.+|...|+ -..-+.|...-++|+...+
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyHgy----------------------------------lY~RLDg~t~vEqRQaLme 1320 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYHGY----------------------------------LYVRLDGNTSVEQRQALME 1320 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhcce----------------------------------EEEEecCCccHHHHHHHHH
Confidence 456788887666666666666654443 1233567888899999999
Q ss_pred HHhc--CCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 520 LFQR--GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 520 ~F~~--G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
+|.. .....|++|-.-..|||+-..+.||. |+..+++..=.|.--|+.|.|+...-+.|-+.+..
T Consensus 1321 rFNaD~RIfcfILSTrSggvGiNLtgADTVvF--------YDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1321 RFNADRRIFCFILSTRSGGVGINLTGADTVVF--------YDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred HhcCCCceEEEEEeccCCccccccccCceEEE--------ecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 9987 34567889999999999999999998 55555666566666666666666777888777664
No 253
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.76 E-value=0.11 Score=66.81 Aligned_cols=87 Identities=18% Similarity=0.160 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEE
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN----QRRIFYTTPLKALSNQKFREFRETFGDNNVGLL 234 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~----g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ll 234 (1174)
.+++-|++|+.. ....++|.|..|||||.+...-+...+.. ..++++++.|+..|..+.+++.+.++..
T Consensus 4 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~----- 76 (715)
T TIGR01075 4 GLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTS----- 76 (715)
T ss_pred ccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhccc-----
Confidence 589999999865 34689999999999999887777776653 2489999999999999999999876521
Q ss_pred eCCCCCCCCCcEEEEcHHHHHHHHhc
Q 001047 235 TGDSAINREAQILIMTTEILRNMLYQ 260 (1174)
Q Consensus 235 tGd~~~~~~~~IlV~Tpe~L~~~L~~ 260 (1174)
...+.|+|-..+...+.+
T Consensus 77 --------~~~~~i~TfHs~~~~iLr 94 (715)
T TIGR01075 77 --------ARGMWIGTFHGLAHRLLR 94 (715)
T ss_pred --------ccCcEEEcHHHHHHHHHH
Confidence 135789999987765544
No 254
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.69 E-value=0.23 Score=56.50 Aligned_cols=105 Identities=26% Similarity=0.325 Sum_probs=63.2
Q ss_pred CChHHHhhcCCCCCCHHHHHHHHHH-HcCCcEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHH
Q 001047 147 IDVDELASIYDFRIDKFQRSSIEAF-LRGSSVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPLKALSNQKFREF 222 (1174)
Q Consensus 147 ~~~~~l~~~~~~~~~~~Q~~ai~~l-l~g~~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~PtraLa~Q~~~~l 222 (1174)
..++.+.... .+++.|.+.+..+ ..+++++|+|+||||||+..- +++..+.. +.+++++-.+.+|.-
T Consensus 106 ~tl~~l~~~g--~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~-al~~~i~~~~~~~ri~tiEd~~El~~------ 176 (299)
T TIGR02782 106 FTLDDYVEAG--IMTAAQRDVLREAVLARKNILVVGGTGSGKTTLAN-ALLAEIAKNDPTDRVVIIEDTRELQC------ 176 (299)
T ss_pred CCHHHHHhcC--CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHH-HHHHHhhccCCCceEEEECCchhhcC------
Confidence 3444444333 2455566666654 455799999999999998763 44555543 578888888877632
Q ss_pred HHHhCCCeEEEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccc
Q 001047 223 RETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283 (1174)
Q Consensus 223 ~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH 283 (1174)
.+...+.+.++. +. .|...+.....+ .+.++||+.|+=
T Consensus 177 ---~~~~~v~~~~~~-----~~----~~~~~~l~~aLR-----------~~pD~iivGEiR 214 (299)
T TIGR02782 177 ---AAPNVVQLRTSD-----DA----ISMTRLLKATLR-----------LRPDRIIVGEVR 214 (299)
T ss_pred ---CCCCEEEEEecC-----CC----CCHHHHHHHHhc-----------CCCCEEEEeccC
Confidence 122234443332 11 166555544332 368899999984
No 255
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.61 E-value=0.15 Score=65.66 Aligned_cols=87 Identities=17% Similarity=0.149 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEE
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN----QRRIFYTTPLKALSNQKFREFRETFGDNNVGLL 234 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~----g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ll 234 (1174)
.+++-|++|+.. ....++|.|..|||||.+...-+...+.. ..++++++-|+..|.++.+++.+.++..
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~----- 81 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS----- 81 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC-----
Confidence 589999999874 34689999999999999887777766653 3489999999999999999999876531
Q ss_pred eCCCCCCCCCcEEEEcHHHHHHHHhc
Q 001047 235 TGDSAINREAQILIMTTEILRNMLYQ 260 (1174)
Q Consensus 235 tGd~~~~~~~~IlV~Tpe~L~~~L~~ 260 (1174)
...+.|+|-..+...+.+
T Consensus 82 --------~~~~~i~TfHs~~~~iLr 99 (721)
T PRK11773 82 --------QGGMWVGTFHGLAHRLLR 99 (721)
T ss_pred --------CCCCEEEcHHHHHHHHHH
Confidence 135789999987765544
No 256
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.58 E-value=0.23 Score=56.70 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=63.1
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE-cccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT-TPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTE 252 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl-~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe 252 (1174)
++.+++.||+|+|||..+...+.....+|..+.|+ +| .|+.+ ++..+++ + +.+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~--~l~~~----lk~~~~~--------------~------~~~ 209 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP--EFIRE----LKNSISD--------------G------SVK 209 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH--HHHHH----HHHHHhc--------------C------cHH
Confidence 46899999999999988876666666667766655 34 44443 3433321 0 112
Q ss_pred HHHHHHhcccccccCCCCCCceeEEEEccccccc--cCCcHHHHHHHHHHC-CCCccEEEEccccCChHHHHHHH
Q 001047 253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS--DISRGTVWEEIIIYC-PKEVQIICLSATVANADELAGWI 324 (1174)
Q Consensus 253 ~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~--d~~~g~~~e~ii~~l-~~~~qiI~LSATl~n~~~~~~~l 324 (1174)
.+.+. +.+++++||||...-. ++.+..++..++... .....+|+.|-- +.+++.+.+
T Consensus 210 ~~l~~-------------l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl--~~~el~~~~ 269 (306)
T PRK08939 210 EKIDA-------------VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF--DFDELEHHL 269 (306)
T ss_pred HHHHH-------------hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC--CHHHHHHHH
Confidence 22222 3478999999997543 333334555555432 233445554433 245555555
No 257
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.58 E-value=0.16 Score=61.11 Aligned_cols=42 Identities=24% Similarity=0.400 Sum_probs=29.4
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q 217 (1174)
+.+++.||+|+|||.......-.....+.+++|+.. ..+.++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-~~f~~~ 183 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-ELFTEH 183 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-HHHHHH
Confidence 458999999999998776544444446788888764 344443
No 258
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.53 E-value=0.12 Score=66.51 Aligned_cols=138 Identities=22% Similarity=0.246 Sum_probs=93.8
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHh------------------cCCeEEEEcccHHHHHHHHHHHHHHhCCC-eEEE
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVA------------------NQRRIFYTTPLKALSNQKFREFRETFGDN-NVGL 233 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~------------------~g~rvlvl~PtraLa~Q~~~~l~~~~g~~-~v~l 233 (1174)
.|+.++.+-..|.|||..-....+.... ..+-+|||+|. ++..||+.++....... .|.+
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEE
Confidence 4578899999999999876555443321 12468999994 88999999999866554 7777
Q ss_pred EeCCCCCC-------CCCcEEEEcHHHHHHHHhcccccc------------cCCCCCCcee--EEEEccccccccCCcHH
Q 001047 234 LTGDSAIN-------REAQILIMTTEILRNMLYQSVGMV------------SSESGLFDVD--VIVLDEVHYLSDISRGT 292 (1174)
Q Consensus 234 ltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~~------------~~~~~l~~v~--lVIiDEaH~l~d~~~g~ 292 (1174)
+.|=.... -+++||++|+.+|++-++.+.... .-...|-.+. -|++|||+++-. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 77744322 278999999999999887652110 0011111222 489999999864 344
Q ss_pred HHHHHHHHCCCCccEEEEcccc
Q 001047 293 VWEEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 293 ~~e~ii~~l~~~~qiI~LSATl 314 (1174)
...+.+.+++ ....-+.|+||
T Consensus 530 ~~a~M~~rL~-~in~W~VTGTP 550 (1394)
T KOG0298|consen 530 AAAEMVRRLH-AINRWCVTGTP 550 (1394)
T ss_pred HHHHHHHHhh-hhceeeecCCc
Confidence 4455555665 46688999995
No 259
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.51 E-value=0.11 Score=56.91 Aligned_cols=51 Identities=16% Similarity=0.306 Sum_probs=37.8
Q ss_pred HcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFR 223 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~ 223 (1174)
..|..+++.+++|+|||+.+...+...+.+|.+++|++.. +-..+..+.+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e-~~~~~~~~~~~ 72 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ-LTTTEFIKQMM 72 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHH
Confidence 4567899999999999999877777777788899999843 33344444443
No 260
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.49 E-value=0.17 Score=64.74 Aligned_cols=87 Identities=20% Similarity=0.182 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEe
Q 001047 160 IDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN----QRRIFYTTPLKALSNQKFREFRETFGDNNVGLLT 235 (1174)
Q Consensus 160 ~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~----g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~llt 235 (1174)
+++-|.+++.. ...+++|.|..|||||.+...-+...+.. ..++++++.|+..+.++.+++.+.+|..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~------ 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKG------ 73 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc------
Confidence 78899998865 34689999999999999888877777753 2489999999999999999999877631
Q ss_pred CCCCCCCCCcEEEEcHHHHHHHHhc
Q 001047 236 GDSAINREAQILIMTTEILRNMLYQ 260 (1174)
Q Consensus 236 Gd~~~~~~~~IlV~Tpe~L~~~L~~ 260 (1174)
....+.|+|-..|...+.+
T Consensus 74 ------~~~~v~v~TfHs~a~~il~ 92 (664)
T TIGR01074 74 ------EARGLTISTFHTLGLDIIK 92 (664)
T ss_pred ------ccCCeEEEeHHHHHHHHHH
Confidence 1346889999988766544
No 261
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.48 E-value=0.48 Score=54.37 Aligned_cols=124 Identities=15% Similarity=0.200 Sum_probs=67.6
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc-c-cHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT-P-LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTT 251 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~-P-traLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tp 251 (1174)
+..+++++|+|+|||+.....+......+++|+++. . .++-+.++...+....+ +.++......+ + .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~---i~~~~~~~~~d--p------a 182 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVG---VPVIAQKEGAD--P------A 182 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcC---ceEEEeCCCCC--H------H
Confidence 457788999999999877655544445666777654 3 35555555555555444 34333322111 1 0
Q ss_pred HHHHHHHhcccccccCCCCCCceeEEEEccccccccC-CcHHHHHHHHHH------CCCCccEEEEccccCC
Q 001047 252 EILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI-SRGTVWEEIIIY------CPKEVQIICLSATVAN 316 (1174)
Q Consensus 252 e~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~-~~g~~~e~ii~~------l~~~~qiI~LSATl~n 316 (1174)
......+.. ....++++||||=+-++... ..-..+..+... ..+.-.++.++||...
T Consensus 183 ~~v~~~l~~--------~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~ 246 (318)
T PRK10416 183 SVAFDAIQA--------AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246 (318)
T ss_pred HHHHHHHHH--------HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh
Confidence 111111111 01247899999999876421 112233333332 1234567899999753
No 262
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.42 E-value=0.12 Score=51.82 Aligned_cols=89 Identities=17% Similarity=0.177 Sum_probs=59.6
Q ss_pred ceeEecCCCCHHHHHHHHHHHhcCC-ceEEEechhhhhcCCcCCc---eEEEeccccc-----------------C-CC-
Q 001047 501 GVAAHHAGCLPIWKSFIEELFQRGL-VKVVFATETLAAGINMPAR---TAVLSSLSKR-----------------T-AS- 557 (1174)
Q Consensus 501 gv~~~Hsgl~~~~R~~v~~~F~~G~-ikVLVAT~tla~GIDiP~v---~vVI~~~~k~-----------------~-~~- 557 (1174)
+..++.-+....+...+++.|++.. ..||++|..+++|||+|+- .+||.+.+.- . +.
T Consensus 23 ~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~ 102 (141)
T smart00492 23 NLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRP 102 (141)
T ss_pred CCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCc
Confidence 3455555666667788999998754 3799999889999999984 4556553311 0 11
Q ss_pred Cc---cccCHHHHHHhhcccCCCCCCCccEEEEEeC
Q 001047 558 GR---IQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 590 (1174)
Q Consensus 558 ~~---~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~ 590 (1174)
+. .|.....+.|.+||+-|... ..|.++++..
T Consensus 103 ~~~~~~~~a~~~l~Qa~GR~iR~~~-D~g~i~l~D~ 137 (141)
T smart00492 103 FDFVSLPDAMRTLAQCVGRLIRGAN-DYGVVVIADK 137 (141)
T ss_pred hhHHHHHHHHHHHHHHhCccccCcC-ceEEEEEEec
Confidence 11 13345678899999999763 5676666543
No 263
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.41 E-value=0.35 Score=57.75 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=65.7
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTE 252 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe 252 (1174)
..+++++++|+|||+++...+......|.+++++. +.|.-+.++...+....+- .+ + +... ..+ ..+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv-p~--~-~~~~---~~d----~~~ 164 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGV-PF--Y-GDPD---NKD----AVE 164 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCC-cE--E-ecCC---ccC----HHH
Confidence 46788999999999887766655545666776654 2345455555555554441 11 1 1110 000 123
Q ss_pred HHHHHHhcccccccCCCCCCceeEEEEcccccccc-CCcHHHHHHHHHHCCCCccEEEEccccC
Q 001047 253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD-ISRGTVWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 253 ~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d-~~~g~~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
.+.+.+.. +...++||||.+-++.- ...-..+..+.....++.-++.++||..
T Consensus 165 i~~~al~~----------~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 165 IAKEGLEK----------FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred HHHHHHHH----------hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc
Confidence 34444432 12348999999955431 1111223333334455666788888875
No 264
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.36 E-value=0.48 Score=64.36 Aligned_cols=135 Identities=16% Similarity=0.121 Sum_probs=79.3
Q ss_pred hHHHhhcCCCCCCHHHHHHHHHHHcC--CcEEEEccCCcchHHHHHH--HHHHHHh--cCCeEEEEcccHHHHHHHHHHH
Q 001047 149 VDELASIYDFRIDKFQRSSIEAFLRG--SSVVVSAPTSSGKTLIAEA--AAVATVA--NQRRIFYTTPLKALSNQKFREF 222 (1174)
Q Consensus 149 ~~~l~~~~~~~~~~~Q~~ai~~ll~g--~~vlv~apTGsGKTlv~~~--~il~~l~--~g~rvlvl~PtraLa~Q~~~~l 222 (1174)
...+.....+.+++-|.+|+..++.+ +-++|.+..|+|||++.-. .++..+. .+.+++.++||-.-+....
T Consensus 825 ~~~~~~~~~~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~--- 901 (1623)
T PRK14712 825 MERVPGELMEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMR--- 901 (1623)
T ss_pred hhhhhhhhhcccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHH---
Confidence 33344444468999999999999854 7889999999999987532 2233332 3568889999977665542
Q ss_pred HHHhCCCeEEEEeCCCCCCCCCcEEEEcHHHHHHHHhccccc-ccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC
Q 001047 223 RETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGM-VSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC 301 (1174)
Q Consensus 223 ~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~-~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l 301 (1174)
+ .| +. ..|..+|+ ...... ..........++||||||=++... .+..++..+
T Consensus 902 -e-~G-i~-----------------A~TIasfL---~~~~~~~~~~~~~~~~~~llIVDEASMV~~~----~m~~ll~~~ 954 (1623)
T PRK14712 902 -S-AG-VD-----------------AQTLASFL---HDTQLQQRSGETPDFSNTLFLLDESSMVGNT----DMARAYALI 954 (1623)
T ss_pred -H-hC-ch-----------------HhhHHHHh---ccccchhhcccCCCCCCcEEEEEccccccHH----HHHHHHHhh
Confidence 2 12 10 12222222 110000 001112234689999999988642 334444444
Q ss_pred CC-CccEEEEccc
Q 001047 302 PK-EVQIICLSAT 313 (1174)
Q Consensus 302 ~~-~~qiI~LSAT 313 (1174)
+. +.++|++-=+
T Consensus 955 ~~~garvVLVGD~ 967 (1623)
T PRK14712 955 AAGGGRAVASGDT 967 (1623)
T ss_pred hhCCCEEEEEcch
Confidence 43 5777777544
No 265
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.32 E-value=0.078 Score=66.01 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=24.2
Q ss_pred CceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 272 ~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
.+.+++||||+|+|....+... .+++..-+.++.+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A~NAL-LKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAM-LKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHH-HHHHHhcCCCeEEEEEE
Confidence 4688999999999975433332 23344445555555544
No 266
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.28 E-value=0.22 Score=54.02 Aligned_cols=102 Identities=17% Similarity=0.267 Sum_probs=55.3
Q ss_pred cEEEEccCCcchHHHHHHHHHHHH---hcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATV---ANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTE 252 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l---~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe 252 (1174)
.+++.||+|+|||-.. .++...+ ..+.+++|+... ..+......+.. ...+
T Consensus 36 ~l~l~G~~G~GKTHLL-~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~------------------------~~~~ 89 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLL-QAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD------------------------GEIE 89 (219)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT------------------------TSHH
T ss_pred ceEEECCCCCCHHHHH-HHHHHHHHhccccccceeecHH-HHHHHHHHHHHc------------------------ccch
Confidence 4899999999999743 3333332 246678877653 333333333222 1223
Q ss_pred HHHHHHhcccccccCCCCCCceeEEEEccccccccCCc-HHHHHHHHHHC-CCCccEEEEccccCC
Q 001047 253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISR-GTVWEEIIIYC-PKEVQIICLSATVAN 316 (1174)
Q Consensus 253 ~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~-g~~~e~ii~~l-~~~~qiI~LSATl~n 316 (1174)
.+.+- +...++||||.+|.+.+... ...+-.++..+ ..+.++|+.|...|+
T Consensus 90 ~~~~~-------------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 90 EFKDR-------------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPS 142 (219)
T ss_dssp HHHHH-------------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TT
T ss_pred hhhhh-------------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCc
Confidence 33332 34789999999999974311 11222222222 335677777766553
No 267
>PLN03025 replication factor C subunit; Provisional
Probab=94.27 E-value=0.19 Score=58.08 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=18.4
Q ss_pred CcEEEEccCCcchHHHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVA 197 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~ 197 (1174)
.++++.||+|+|||..+...+-.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999887655443
No 268
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.23 E-value=0.16 Score=53.29 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=36.7
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Ptra 213 (1174)
....++|..++|-|||.+++-.+++++..|.+|+++.=.|-
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg 61 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKG 61 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC
Confidence 45689999999999999999999999999999999987664
No 269
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.12 E-value=0.18 Score=61.68 Aligned_cols=148 Identities=16% Similarity=0.144 Sum_probs=79.9
Q ss_pred HHHHHHHHHHH-----cC----CcEEEEccCCcchHHHHHHHHHHHH-h---cCCeEEEEcccHHHHHHHHHHHHHHhCC
Q 001047 162 KFQRSSIEAFL-----RG----SSVVVSAPTSSGKTLIAEAAAVATV-A---NQRRIFYTTPLKALSNQKFREFRETFGD 228 (1174)
Q Consensus 162 ~~Q~~ai~~ll-----~g----~~vlv~apTGsGKTlv~~~~il~~l-~---~g~rvlvl~PtraLa~Q~~~~l~~~~g~ 228 (1174)
|+|+-.+..++ .| +.+++.-|=|.|||......++..+ . .+..++++++++.-|..++..+...+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 57877777766 22 4688999999999977655544333 2 3568999999999999999988886543
Q ss_pred CeEEE-EeC-CCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCcc
Q 001047 229 NNVGL-LTG-DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ 306 (1174)
Q Consensus 229 ~~v~l-ltG-d~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~q 306 (1174)
..... ..+ .........|..-.++.....+..... ...=.+..++|+||+|.+.+...-..+..-+... ++.+
T Consensus 81 ~~~l~~~~~~~~~~~~~~~i~~~~~~s~~~~~s~~~~----~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r-~~pl 155 (477)
T PF03354_consen 81 SPELRKRKKPKIIKSNKKEIEFPKTGSFFKALSSDAD----SLDGLNPSLAIFDELHAHKDDELYDALESGMGAR-PNPL 155 (477)
T ss_pred ChhhccchhhhhhhhhceEEEEcCCCcEEEEEecCCC----CccCCCCceEEEeCCCCCCCHHHHHHHHhhhccC-CCce
Confidence 11000 000 000001122222222211111111111 1111257899999999987643333333333333 3455
Q ss_pred EEEE-cccc
Q 001047 307 IICL-SATV 314 (1174)
Q Consensus 307 iI~L-SATl 314 (1174)
++.. ||..
T Consensus 156 ~~~ISTag~ 164 (477)
T PF03354_consen 156 IIIISTAGD 164 (477)
T ss_pred EEEEeCCCC
Confidence 5544 4443
No 270
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.12 E-value=0.27 Score=59.35 Aligned_cols=76 Identities=20% Similarity=0.380 Sum_probs=47.3
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVA---NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTT 251 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~---~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tp 251 (1174)
+.+++.|++|+|||.... ++...+. .+.+++|+.+ ..+.++....+.... .+.
T Consensus 142 npl~i~G~~G~GKTHLl~-Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l~~~~----------------------~~~ 197 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLK-AAKNYIESNFSDLKVSYMSG-DEFARKAVDILQKTH----------------------KEI 197 (450)
T ss_pred CceEEECCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHHhh----------------------hHH
Confidence 458899999999996653 4444332 4568887766 456655554443200 112
Q ss_pred HHHHHHHhcccccccCCCCCCceeEEEEcccccccc
Q 001047 252 EILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287 (1174)
Q Consensus 252 e~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d 287 (1174)
+.+.. .+.++++|||||+|.+..
T Consensus 198 ~~~~~-------------~~~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 198 EQFKN-------------EICQNDVLIIDDVQFLSY 220 (450)
T ss_pred HHHHH-------------HhccCCEEEEeccccccC
Confidence 22222 134688999999999863
No 271
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.03 E-value=0.24 Score=51.60 Aligned_cols=92 Identities=17% Similarity=0.218 Sum_probs=58.4
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEIL 254 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~L 254 (1174)
.-.++++|..||||.-.+.-+......|.++++..|- +-.+|+...|.--.| .... -++|-.+..+
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~----------iD~R~~~~~V~Sr~G---~~~~-A~~i~~~~~i 70 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPA----------IDTRYGVGKVSSRIG---LSSE-AVVIPSDTDI 70 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecc----------cccccccceeeeccC---Cccc-ceecCChHHH
Confidence 4568999999999997777776666789999999993 333444322322222 2223 3444455555
Q ss_pred HHHHhcccccccCCCCCCceeEEEEcccccccc
Q 001047 255 RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287 (1174)
Q Consensus 255 ~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d 287 (1174)
...+... .....+++|.||||+.+..
T Consensus 71 ~~~i~~~-------~~~~~~~~v~IDEaQF~~~ 96 (201)
T COG1435 71 FDEIAAL-------HEKPPVDCVLIDEAQFFDE 96 (201)
T ss_pred HHHHHhc-------ccCCCcCEEEEehhHhCCH
Confidence 5555431 1122389999999999764
No 272
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.02 E-value=0.37 Score=58.05 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=25.1
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhc--CCeEEEEcc
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVAN--QRRIFYTTP 210 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~--g~rvlvl~P 210 (1174)
+.+++.||+|+|||..+....-..... +.+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 468999999999998775444333332 457888764
No 273
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.95 E-value=0.3 Score=61.11 Aligned_cols=137 Identities=19% Similarity=0.227 Sum_probs=84.7
Q ss_pred CCCCCCHHHHHHHHH---HHcC--CcEEEEccCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHHHh--
Q 001047 156 YDFRIDKFQRSSIEA---FLRG--SSVVVSAPTSSGKTLIAEAAAVATVANQ--RRIFYTTPLKALSNQKFREFRETF-- 226 (1174)
Q Consensus 156 ~~~~~~~~Q~~ai~~---ll~g--~~vlv~apTGsGKTlv~~~~il~~l~~g--~rvlvl~PtraLa~Q~~~~l~~~~-- 226 (1174)
+....+.-|.+++.. ++.. +-+++.|.=|=|||.+..+++......+ .+++|++|+++-+...++-..+-+
T Consensus 208 ~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~ 287 (758)
T COG1444 208 YELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEF 287 (758)
T ss_pred hhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHH
Confidence 333455666665554 4444 3688899999999999887775444444 499999999988887776655533
Q ss_pred -CCC-eEEE-EeCCCCCC--CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC
Q 001047 227 -GDN-NVGL-LTGDSAIN--REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC 301 (1174)
Q Consensus 227 -g~~-~v~l-ltGd~~~~--~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l 301 (1174)
|.. .|.. ..|..... ....|=+.+|.... ..-++||||||=-+ .-+.+..++...
T Consensus 288 lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~----------------~~~DllvVDEAAaI----plplL~~l~~~~ 347 (758)
T COG1444 288 LGYKRKVAPDALGEIREVSGDGFRIEYVPPDDAQ----------------EEADLLVVDEAAAI----PLPLLHKLLRRF 347 (758)
T ss_pred hCCccccccccccceeeecCCceeEEeeCcchhc----------------ccCCEEEEehhhcC----ChHHHHHHHhhc
Confidence 211 0110 11111111 22335555554321 12689999999876 356666666554
Q ss_pred CCCccEEEEccccCC
Q 001047 302 PKEVQIICLSATVAN 316 (1174)
Q Consensus 302 ~~~~qiI~LSATl~n 316 (1174)
+.++||.|+..
T Consensus 348 ----~rv~~sTTIhG 358 (758)
T COG1444 348 ----PRVLFSTTIHG 358 (758)
T ss_pred ----CceEEEeeecc
Confidence 47999999964
No 274
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.94 E-value=0.16 Score=56.77 Aligned_cols=116 Identities=16% Similarity=0.307 Sum_probs=64.6
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHh---cC----CeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEE
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVA---NQ----RRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~---~g----~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~Il 247 (1174)
.+++++|+||.|||.+..-..-.+-. .+ +.+++-+|..+=....|..+-..+|-- ......+-
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP----------~~~~~~~~ 131 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP----------YRPRDRVA 131 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc----------cCCCCCHH
Confidence 58999999999999876554433221 01 245555788777777777777766531 11111111
Q ss_pred EEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHH--HHHHHHHHCCC--CccEEEEccc
Q 001047 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT--VWEEIIIYCPK--EVQIICLSAT 313 (1174)
Q Consensus 248 V~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~--~~e~ii~~l~~--~~qiI~LSAT 313 (1174)
-.+...+ .++.. -+++++||||+|.++...... .+-..++.+.. .+.+|++ .|
T Consensus 132 ~~~~~~~-~llr~-----------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v-Gt 188 (302)
T PF05621_consen 132 KLEQQVL-RLLRR-----------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV-GT 188 (302)
T ss_pred HHHHHHH-HHHHH-----------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe-cc
Confidence 1111111 22321 378999999999987533222 23334555543 3445544 44
No 275
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.88 E-value=0.58 Score=59.17 Aligned_cols=123 Identities=20% Similarity=0.227 Sum_probs=70.7
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHH-HhcC-CeEEEEcc--cHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEE
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVAT-VANQ-RRIFYTTP--LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIM 249 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~-l~~g-~rvlvl~P--traLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~ 249 (1174)
++-+.+++|||+|||+.....+... ...| +++.++.- .|.=+..+.+.+.+.++- +-.++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gv---------------pv~~~~ 249 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGV---------------PVHAVK 249 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCC---------------CccccC
Confidence 4567899999999998766555443 3444 35544432 233344444555554441 111234
Q ss_pred cHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHH---HCCCCccEEEEccccCChHHHHHHH
Q 001047 250 TTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIII---YCPKEVQIICLSATVANADELAGWI 324 (1174)
Q Consensus 250 Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~---~l~~~~qiI~LSATl~n~~~~~~~l 324 (1174)
+|+.+...+.. +.+.++|+||=+=+.... ....+++.. ...+.-.++.+|||. ..+++.+.+
T Consensus 250 ~~~~l~~al~~----------~~~~D~VLIDTAGRs~~d--~~l~eel~~l~~~~~p~e~~LVLsAt~-~~~~l~~i~ 314 (767)
T PRK14723 250 DAADLRFALAA----------LGDKHLVLIDTVGMSQRD--RNVSEQIAMLCGVGRPVRRLLLLNAAS-HGDTLNEVV 314 (767)
T ss_pred CHHHHHHHHHH----------hcCCCEEEEeCCCCCccC--HHHHHHHHHHhccCCCCeEEEEECCCC-cHHHHHHHH
Confidence 77777776653 346789999988765321 123333322 234455688899996 455554433
No 276
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=93.82 E-value=0.02 Score=59.36 Aligned_cols=118 Identities=17% Similarity=0.192 Sum_probs=58.7
Q ss_pred EEEccCCcchHHHHHHHHHHHHhcCC-eEEEEcccHHHHHHHHHHHHHHhCCCeEEE----EeCC--CCCCCCCcEEEEc
Q 001047 178 VVSAPTSSGKTLIAEAAAVATVANQR-RIFYTTPLKALSNQKFREFRETFGDNNVGL----LTGD--SAINREAQILIMT 250 (1174)
Q Consensus 178 lv~apTGsGKTlv~~~~il~~l~~g~-rvlvl~PtraLa~Q~~~~l~~~~g~~~v~l----ltGd--~~~~~~~~IlV~T 250 (1174)
++.|+=|-|||.+..+++...+..+. +++|++|+.+=++..++.+...+.....-. -.+. ........|-+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~ 80 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLRFNKQRIEFVA 80 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC--------------------------CCC--B--
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccccccceEEEEC
Confidence 57899999999988887766555543 899999999888887776655333210000 0000 0011256777788
Q ss_pred HHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEccccCC
Q 001047 251 TEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316 (1174)
Q Consensus 251 pe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n 316 (1174)
|+.+... -...+++|||||=.+. -+.+..++.. ...+.||-|+..
T Consensus 81 Pd~l~~~-------------~~~~DlliVDEAAaIp----~p~L~~ll~~----~~~vv~stTi~G 125 (177)
T PF05127_consen 81 PDELLAE-------------KPQADLLIVDEAAAIP----LPLLKQLLRR----FPRVVFSTTIHG 125 (177)
T ss_dssp HHHHCCT-----------------SCEEECTGGGS-----HHHHHHHHCC----SSEEEEEEEBSS
T ss_pred CHHHHhC-------------cCCCCEEEEechhcCC----HHHHHHHHhh----CCEEEEEeeccc
Confidence 8765431 1245899999998763 4455555433 336788889864
No 277
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.81 E-value=0.21 Score=55.08 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=36.3
Q ss_pred HcCCcEEEEccCCcchHHHHHHHHHHHHhc-CCeEEEEc---ccHHHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEAAAVATVAN-QRRIFYTT---PLKALSNQK 218 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~~il~~l~~-g~rvlvl~---PtraLa~Q~ 218 (1174)
..|.-++|+|+||+|||......+.+.+.+ +.+++|++ |...+..++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHH
Confidence 456788999999999999888877777776 88999987 344444443
No 278
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.81 E-value=0.29 Score=54.97 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=32.2
Q ss_pred HHcCCcEEEEccCCcchHHHHHHHHHHHHhc-CCeEEEEcc
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEAAAVATVAN-QRRIFYTTP 210 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~~il~~l~~-g~rvlvl~P 210 (1174)
+..|..++|.|+||+|||..+...+...... |.+++|++-
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 4566789999999999998887777766666 888988864
No 279
>PF13173 AAA_14: AAA domain
Probab=93.67 E-value=0.37 Score=47.43 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=23.6
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
++.+++.||.|+|||+.....+-... ...+++|+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi 35 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYI 35 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceee
Confidence 56789999999999988766554433 33445554
No 280
>PTZ00293 thymidine kinase; Provisional
Probab=93.61 E-value=0.36 Score=51.54 Aligned_cols=86 Identities=19% Similarity=0.198 Sum_probs=53.8
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCCCCcEEEEcHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETF-GDNNVGLLTGDSAINREAQILIMTTE 252 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~-g~~~v~lltGd~~~~~~~~IlV~Tpe 252 (1174)
|.-.++.||.+||||.-.+..+......+++++++-|.. -.++ +...+....| ....+ +.|....
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~----------DtR~~~~~~I~Sh~g---~~~~a-~~v~~~~ 69 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSK----------DTRYSDEQNISSHDK---QMLKA-IKVSKLK 69 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecc----------cccCCCCCcEEecCC---Cccee-EEcCCHH
Confidence 455688999999999877777777777889999999953 2223 3222211111 11122 4444433
Q ss_pred HHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 253 ~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
-+... +.++++|+|||+|.+.
T Consensus 70 e~~~~-------------~~~~dvI~IDEaQFf~ 90 (211)
T PTZ00293 70 EVLET-------------AKNYDVIAIDEGQFFP 90 (211)
T ss_pred HHHHh-------------ccCCCEEEEEchHhhH
Confidence 33221 2468999999999974
No 281
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.51 E-value=0.28 Score=63.22 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcC----CeEEEEcccHHHHHHHHHHHHHHhCCCeEEEE
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ----RRIFYTTPLKALSNQKFREFRETFGDNNVGLL 234 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g----~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ll 234 (1174)
.+++-|.+|+.. ....++|.|..|||||.+...-|...+..+ .++++++-|+..+..+.+++.+.++.
T Consensus 4 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~------ 75 (726)
T TIGR01073 4 HLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGP------ 75 (726)
T ss_pred ccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhcc------
Confidence 589999999975 346899999999999999888777777542 48999999999999999999886553
Q ss_pred eCCCCCCCCCcEEEEcHHHHHHHHhc
Q 001047 235 TGDSAINREAQILIMTTEILRNMLYQ 260 (1174)
Q Consensus 235 tGd~~~~~~~~IlV~Tpe~L~~~L~~ 260 (1174)
....+.|+|-..+...+.+
T Consensus 76 -------~~~~~~i~TFHs~~~~iLr 94 (726)
T TIGR01073 76 -------VAEDIWISTFHSMCVRILR 94 (726)
T ss_pred -------ccCCcEEEcHHHHHHHHHH
Confidence 1246789999887765543
No 282
>PRK04195 replication factor C large subunit; Provisional
Probab=93.41 E-value=0.37 Score=58.90 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=18.0
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+.+++.||+|+|||..+...+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala 60 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALA 60 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3689999999999998776443
No 283
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.40 E-value=0.17 Score=54.17 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=17.2
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
.++|+.||.|.|||..+.+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA 71 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIA 71 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHHH
Confidence 479999999999998876544
No 284
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.37 E-value=0.83 Score=54.22 Aligned_cols=121 Identities=11% Similarity=0.005 Sum_probs=66.5
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcH-H
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTT-E 252 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tp-e 252 (1174)
.+++++++|+|||+.+.-.+......|.+++++. |.|+-+.++.+.+.+..+ ..+....... .| .
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~-vp~~~~~~~~-----------dp~~ 169 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKAR-IPFYGSYTES-----------DPVK 169 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccC-CeEEeecCCC-----------CHHH
Confidence 5778999999999876655544445677776664 456666666666665433 2121111100 11 1
Q ss_pred HHHHHHhcccccccCCCCCCceeEEEEccccccccC-CcHHHHHHHHHHCCCCccEEEEccccCC
Q 001047 253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI-SRGTVWEEIIIYCPKEVQIICLSATVAN 316 (1174)
Q Consensus 253 ~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~-~~g~~~e~ii~~l~~~~qiI~LSATl~n 316 (1174)
+..+.+... .-..+++||||=+-++... ..-..+..+.....+...++.++||.+.
T Consensus 170 i~~~~l~~~--------~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq 226 (429)
T TIGR01425 170 IASEGVEKF--------KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ 226 (429)
T ss_pred HHHHHHHHH--------HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh
Confidence 122222110 0136899999999765321 1122233333344556668889999863
No 285
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.37 E-value=0.27 Score=54.94 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=18.2
Q ss_pred CcEEEEccCCcchHHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il 196 (1174)
.++++.||+|+|||.++-..+-
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999998866543
No 286
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.36 E-value=0.21 Score=64.29 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=26.4
Q ss_pred CCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 271 l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
..+++++||||||+|....+ ..+.+++...+.++.+|+.+
T Consensus 118 ~~~~KV~IIDEad~lt~~a~-NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGF-NALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 35789999999999985322 23444555556666666654
No 287
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.35 E-value=0.28 Score=56.41 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=24.8
Q ss_pred CceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 272 ~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
...++|||||+|.+........+..++...+.+.++|+.|
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 3567999999999843333344444555555566655533
No 288
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.23 E-value=0.55 Score=56.62 Aligned_cols=88 Identities=16% Similarity=0.252 Sum_probs=56.4
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEc--
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMT-- 250 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~T-- 250 (1174)
.|.-+++.+++|+|||+.....+.....++.+++|+.-. +-..|+..+... +|... ..+.+..
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E-es~~qi~~ra~r-lg~~~-------------~~l~~~~e~ 143 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE-ESASQIKLRAER-LGLPS-------------DNLYLLAET 143 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-ccHHHHHHHHHH-cCCCh-------------hcEEEeCCC
Confidence 456789999999999998887777666678899998853 444566555444 44210 0122222
Q ss_pred -HHHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 251 -TEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 251 -pe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
-+.+...+.. .+.++||||+++.+.
T Consensus 144 ~l~~i~~~i~~-----------~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 144 NLEAILATIEE-----------EKPDLVVIDSIQTMY 169 (446)
T ss_pred CHHHHHHHHHh-----------hCCCEEEEechhhhc
Confidence 2333333321 257899999999775
No 289
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.22 E-value=0.5 Score=51.86 Aligned_cols=50 Identities=10% Similarity=0.323 Sum_probs=37.9
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
|..+++.+++|+|||..+...+...+.+|.+++|+.=-.. ..++.+.+..
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~-~~~~~~~~~~ 74 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT-SKSYLKQMES 74 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC-HHHHHHHHHH
Confidence 4678899999999999998888888888999999875433 2445555544
No 290
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.20 E-value=0.11 Score=62.08 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=17.3
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il 196 (1174)
.+|++||.|+|||.++-+.+-
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 379999999999998876543
No 291
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.17 E-value=0.77 Score=51.88 Aligned_cols=122 Identities=16% Similarity=0.252 Sum_probs=80.8
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEI 253 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~ 253 (1174)
.+++++-.|+|||+...-.+.....+|.+|++.+ -.||-|.++.+.+.+..| +.++.+.... ..+.|++
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~g---v~vI~~~~G~-DpAaVaf----- 211 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLG---VPVISGKEGA-DPAAVAF----- 211 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhC---CeEEccCCCC-CcHHHHH-----
Confidence 5788999999999988777777777888888876 468999999999998877 5555543111 1122322
Q ss_pred HHHHHhcccccccCCCCCCceeEEEEccccccccC-CcHHHHHHHHHHCCCCc------cEEEEccccCC
Q 001047 254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI-SRGTVWEEIIIYCPKEV------QIICLSATVAN 316 (1174)
Q Consensus 254 L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~-~~g~~~e~ii~~l~~~~------qiI~LSATl~n 316 (1174)
+-+... .-+++++|++|=|=+|-.. .--..++++.+.+.+.. -++.+=||.++
T Consensus 212 --DAi~~A--------kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq 271 (340)
T COG0552 212 --DAIQAA--------KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ 271 (340)
T ss_pred --HHHHHH--------HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh
Confidence 222211 2358999999999988643 22334555555554332 45666899875
No 292
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.16 E-value=0.69 Score=48.05 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=24.9
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
+++.+++|+|||......+......+.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 678999999999987766655555677776654
No 293
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.12 E-value=1.2 Score=61.48 Aligned_cols=133 Identities=18% Similarity=0.122 Sum_probs=78.7
Q ss_pred HhhcCCCCCCHHHHHHHHHHHcC--CcEEEEccCCcchHHHHHHH--HHHHHh--cCCeEEEEcccHHHHHHHHHHHHHH
Q 001047 152 LASIYDFRIDKFQRSSIEAFLRG--SSVVVSAPTSSGKTLIAEAA--AVATVA--NQRRIFYTTPLKALSNQKFREFRET 225 (1174)
Q Consensus 152 l~~~~~~~~~~~Q~~ai~~ll~g--~~vlv~apTGsGKTlv~~~~--il~~l~--~g~rvlvl~PtraLa~Q~~~~l~~~ 225 (1174)
......+.+++.|.+|+..++.+ +-++|.+..|+|||++.-.. ++..+. .+.+++.++||---+.++ .+
T Consensus 960 ~~~~~~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L----~e- 1034 (1747)
T PRK13709 960 VPGELMEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEM----RS- 1034 (1747)
T ss_pred HHHHhcCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHH----Hh-
Confidence 34444568999999999999875 57899999999999875332 233222 356788999998666543 22
Q ss_pred hCCCeEEEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCC-C
Q 001047 226 FGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPK-E 304 (1174)
Q Consensus 226 ~g~~~v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~-~ 304 (1174)
.| + --.|..+|+...... ..........-++|||||+=++.... +..++..++. +
T Consensus 1035 ~G-i-----------------~A~TI~s~L~~~~~~--~~~~~~~~~~~~llIVDEaSMv~~~~----m~~Ll~~~~~~g 1090 (1747)
T PRK13709 1035 AG-V-----------------DAQTLASFLHDTQLQ--QRSGETPDFSNTLFLLDESSMVGNTD----MARAYALIAAGG 1090 (1747)
T ss_pred cC-c-----------------chhhHHHHhcccccc--cccccCCCCCCcEEEEEccccccHHH----HHHHHHhhhcCC
Confidence 12 1 012433333211000 00011122345899999999886433 3444555543 5
Q ss_pred ccEEEEccc
Q 001047 305 VQIICLSAT 313 (1174)
Q Consensus 305 ~qiI~LSAT 313 (1174)
.++|++-=+
T Consensus 1091 arvVLVGD~ 1099 (1747)
T PRK13709 1091 GRAVSSGDT 1099 (1747)
T ss_pred CEEEEecch
Confidence 777776533
No 294
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.12 E-value=0.22 Score=61.95 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=24.8
Q ss_pred CCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 271 l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
+.+.++|||||+|.|....+. .+.+.+..-+..+.+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A~N-ALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSAFN-AMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHHHH-HHHHHHHhCCCCcEEEEEe
Confidence 457899999999998743222 2333344445566666654
No 295
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.07 E-value=0.13 Score=53.97 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=32.4
Q ss_pred HHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQK 218 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~ 218 (1174)
+.+++++++.||||+|||..+...+.+.+..|..++|+ +...|.+.+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE-EHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe-ecCceeccc
Confidence 44678999999999999999877777777778888775 444555543
No 296
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.04 E-value=0.4 Score=59.27 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=24.0
Q ss_pred CceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 272 ~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
.+.+++||||||+|....+.. +.+++..-+..+.+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A~NA-LLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNA-LLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHHHHH-HHHHHhcCCCCcEEEEEE
Confidence 467899999999997543332 333444445555555543
No 297
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.03 E-value=0.13 Score=62.76 Aligned_cols=39 Identities=28% Similarity=0.277 Sum_probs=25.2
Q ss_pred CceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 272 ~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
.+.+++||||||+|....+.. +.+.+..-|+++.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~na-LLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNA-LLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHH-HHHHHhccCCCeEEEEEE
Confidence 478999999999997544332 223444445566666644
No 298
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.00 E-value=0.19 Score=57.57 Aligned_cols=55 Identities=27% Similarity=0.365 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHH-cCCcEEEEccCCcchHHHHHHHHHHHH---hcCCeEEEEcccHHHH
Q 001047 160 IDKFQRSSIEAFL-RGSSVVVSAPTSSGKTLIAEAAAVATV---ANQRRIFYTTPLKALS 215 (1174)
Q Consensus 160 ~~~~Q~~ai~~ll-~g~~vlv~apTGsGKTlv~~~~il~~l---~~g~rvlvl~PtraLa 215 (1174)
+++.|.+.+..+. .+.+++|+|+||||||+.. .+++..+ ..+.+++.+-.+.+|.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCcccc
Confidence 5677877776544 5579999999999999865 4455555 2456888888777764
No 299
>PF13871 Helicase_C_4: Helicase_C-like
Probab=92.98 E-value=0.11 Score=57.66 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=52.6
Q ss_pred HHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 516 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 516 ~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
...+.|.+|..+|+|.|++.+.||-+.+-.-+-+.-.+.--....|+|....+|..||+.|.|+-..-.-.++.++
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~ 127 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTD 127 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecC
Confidence 3456799999999999999999999876433322111100014689999999999999999986443333344443
No 300
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.97 E-value=0.091 Score=55.52 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=18.0
Q ss_pred CcEEEEccCCcchHHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il 196 (1174)
-++++++|+|+|||+.....+.
T Consensus 49 P~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHH
Confidence 4899999999999998765443
No 301
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.95 E-value=0.46 Score=53.79 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=17.6
Q ss_pred CCcEEEEccCCcchHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~ 194 (1174)
+.++++.||+|+|||+++...
T Consensus 58 ~~~vll~G~pGTGKT~lA~~i 78 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRM 78 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHH
Confidence 458999999999999988544
No 302
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.94 E-value=0.31 Score=60.11 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=17.7
Q ss_pred cEEEEccCCcchHHHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVA 197 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~ 197 (1174)
-+|++||.|+|||..+...+-.
T Consensus 40 A~LFtGP~GvGKTTLAriLAka 61 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKS 61 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4699999999999988765433
No 303
>PHA00729 NTP-binding motif containing protein
Probab=92.94 E-value=0.53 Score=50.84 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=58.9
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEIL 254 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~L 254 (1174)
.++++.|++|+|||..+...+.... ..++. +..+.........+++.+.+.|
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~------------------------~~l~~----l~~~~~~~d~~~~~~fid~~~L 69 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF------------------------WKLNN----LSTKDDAWQYVQNSYFFELPDA 69 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH------------------------hhccc----ccchhhHHhcCCcEEEEEHHHH
Confidence 4899999999999987765443211 00000 0111112223446667777777
Q ss_pred HHHHhcccccccCCCCCCceeEEEEccc--ccccc-CCc--HHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhc
Q 001047 255 RNMLYQSVGMVSSESGLFDVDVIVLDEV--HYLSD-ISR--GTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326 (1174)
Q Consensus 255 ~~~L~~~~~~~~~~~~l~~v~lVIiDEa--H~l~d-~~~--g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~ 326 (1174)
...+.... ....+++++||||+ |.... +.. ...+-.+...+.+.++++.+... +++++...+..
T Consensus 70 l~~L~~a~------~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~l--s~edL~~~Lr~ 138 (226)
T PHA00729 70 LEKIQDAI------DNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTP--SPEDLAFYLRE 138 (226)
T ss_pred HHHHHHHH------hcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecC--CHHHHHHHHHh
Confidence 77665321 11235688999993 33211 000 01111222233334455555544 56777777764
No 304
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.93 E-value=0.79 Score=53.90 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=17.5
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++|+||+|+|||.+....+
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~ 61 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVM 61 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 589999999999998775544
No 305
>PRK10867 signal recognition particle protein; Provisional
Probab=92.85 E-value=1.2 Score=53.05 Aligned_cols=121 Identities=12% Similarity=0.154 Sum_probs=66.1
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhc-CCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVAN-QRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTT 251 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~-g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tp 251 (1174)
..+++++++|+|||+.+.-.+...... |.+++++. +.|+-+..+.+.+.+..+ +-++..... ..|
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~g---v~v~~~~~~---------~dp 168 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIG---VPVFPSGDG---------QDP 168 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcC---CeEEecCCC---------CCH
Confidence 357889999999998877666555555 67776654 566666555555555443 222322111 123
Q ss_pred HHHH-HHHhcccccccCCCCCCceeEEEEcccccccc-CCcHHHHHHHHHHCCCCccEEEEccccC
Q 001047 252 EILR-NMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD-ISRGTVWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 252 e~L~-~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d-~~~g~~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
..+. ..+.. ....++++||+|=+=++.. ...-..+..+.....+.--++.++||.+
T Consensus 169 ~~i~~~a~~~--------a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g 226 (433)
T PRK10867 169 VDIAKAALEE--------AKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG 226 (433)
T ss_pred HHHHHHHHHH--------HHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH
Confidence 3222 22211 1123689999998866531 1111223333333444444777888864
No 306
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.82 E-value=0.46 Score=67.02 Aligned_cols=124 Identities=16% Similarity=0.194 Sum_probs=75.4
Q ss_pred CCCCCHHHHHHHHHHHcC--CcEEEEccCCcchHHHHH---HHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHHhCCCe
Q 001047 157 DFRIDKFQRSSIEAFLRG--SSVVVSAPTSSGKTLIAE---AAAVATVA-NQRRIFYTTPLKALSNQKFREFRETFGDNN 230 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~ll~g--~~vlv~apTGsGKTlv~~---~~il~~l~-~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~ 230 (1174)
.+.+++.|++|+..++.+ +-++|.++.|+|||++.. -++.+.+. .+.+++.++||-.-+.+. ++ .| ..
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L----~~-~g-~~ 1090 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGEL----KS-AG-VQ 1090 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHH----Hh-cC-Cc
Confidence 457999999999998865 567889999999998762 23444443 467899999997665544 22 12 10
Q ss_pred EEEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC-CCCccEEE
Q 001047 231 VGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC-PKEVQIIC 309 (1174)
Q Consensus 231 v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l-~~~~qiI~ 309 (1174)
..|...|+. .. ........+...++||||||=++.. ..+..++... ....++|+
T Consensus 1091 -----------------a~Ti~s~l~---~~-~~~~~~~~~~~~~v~ivDEasMv~~----~~~~~l~~~~~~~~ak~vl 1145 (1960)
T TIGR02760 1091 -----------------AQTLDSFLT---DI-SLYRNSGGDFRNTLFILDESSMVSN----FQLTHATELVQKSGSRAVS 1145 (1960)
T ss_pred -----------------hHhHHHHhc---Cc-ccccccCCCCcccEEEEEccccccH----HHHHHHHHhccCCCCEEEE
Confidence 123333321 10 0000112245678999999998763 3334444443 34567776
Q ss_pred Ec
Q 001047 310 LS 311 (1174)
Q Consensus 310 LS 311 (1174)
+-
T Consensus 1146 vG 1147 (1960)
T TIGR02760 1146 LG 1147 (1960)
T ss_pred eC
Confidence 64
No 307
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=92.80 E-value=0.39 Score=55.37 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHcCC----cEEEEccCCcchHHHHHHHHHH
Q 001047 160 IDKFQRSSIEAFLRGS----SVVVSAPTSSGKTLIAEAAAVA 197 (1174)
Q Consensus 160 ~~~~Q~~ai~~ll~g~----~vlv~apTGsGKTlv~~~~il~ 197 (1174)
+.|||...+..+.... .++++||.|.|||..+...+-.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ 45 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAA 45 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHH
Confidence 4678888888776542 5789999999999887665443
No 308
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.75 E-value=0.52 Score=54.06 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=29.0
Q ss_pred HHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHH
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Ptra 213 (1174)
+..+.++++++|||||||+..-. ++..+....+++++-.+.+
T Consensus 141 v~~~~~ili~G~tGsGKTTll~a-l~~~~~~~~~iv~ied~~E 182 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKS-LVDEIPKDERIITIEDTRE 182 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHH-HHccCCccccEEEEcCccc
Confidence 44678999999999999987633 4444445556766654444
No 309
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.65 E-value=0.78 Score=53.44 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=25.4
Q ss_pred CCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEcc
Q 001047 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 312 (1174)
Q Consensus 271 l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSA 312 (1174)
.....+|||||||.|...... .+-+++..-+.+..+|++|.
T Consensus 139 ~g~~rVviIDeAd~l~~~aan-aLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAAN-AILKTLEEPPARALFILISH 179 (351)
T ss_pred cCCceEEEEEchhhcCHHHHH-HHHHHHhcCCCCceEEEEEC
Confidence 457889999999999743322 23344444445555666653
No 310
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.64 E-value=0.18 Score=55.57 Aligned_cols=51 Identities=14% Similarity=0.157 Sum_probs=40.2
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
.|..++|.||+|+|||+.+...+...+.+|.+++|++- -+-..|+.+.+..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~-ee~~~~i~~~~~~ 70 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL-EEHPVQVRRNMAQ 70 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe-eCCHHHHHHHHHH
Confidence 35689999999999999998888888888999999983 4455566555554
No 311
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.62 E-value=0.62 Score=57.48 Aligned_cols=100 Identities=16% Similarity=0.275 Sum_probs=55.8
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVA--NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEI 253 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~--~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~ 253 (1174)
.+++.|++|+|||............ .+.+++|+.- ..++++....+.. + ..+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita-eef~~el~~al~~---~---------------------~~~~ 370 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS-EEFTNEFINSIRD---G---------------------KGDS 370 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH-HHHHHHHHHHHHh---c---------------------cHHH
Confidence 4899999999999766544333332 3667777654 4555554433322 0 1122
Q ss_pred HHHHHhcccccccCCCCCCceeEEEEccccccccCCc-HHHHHHHHHHC-CCCccEEEEccc
Q 001047 254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISR-GTVWEEIIIYC-PKEVQIICLSAT 313 (1174)
Q Consensus 254 L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~-g~~~e~ii~~l-~~~~qiI~LSAT 313 (1174)
+... +.++++||||++|.+..... ...+-.++..+ ..+.++|+.|-.
T Consensus 371 f~~~-------------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 371 FRRR-------------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred HHHH-------------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 3322 34689999999999875332 22222334333 234556654433
No 312
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.57 E-value=0.21 Score=62.31 Aligned_cols=20 Identities=35% Similarity=0.316 Sum_probs=16.7
Q ss_pred EEEEccCCcchHHHHHHHHH
Q 001047 177 VVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il 196 (1174)
+|++||.|+|||+++.+.+-
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999998866543
No 313
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.54 E-value=0.51 Score=58.99 Aligned_cols=136 Identities=16% Similarity=0.214 Sum_probs=77.6
Q ss_pred HHHHHHHcC---CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccH------HHHHHHHHHHHHHhCCCeEEEEeC
Q 001047 166 SSIEAFLRG---SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK------ALSNQKFREFRETFGDNNVGLLTG 236 (1174)
Q Consensus 166 ~ai~~ll~g---~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Ptr------aLa~Q~~~~l~~~~g~~~v~lltG 236 (1174)
+.+..+..+ +-++++||-|+|||+.....+. ....+..|.++.=-- -.+++....+....+. . |
T Consensus 26 rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~-----~-~ 98 (894)
T COG2909 26 RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPT-----L-G 98 (894)
T ss_pred HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCcc-----c-c
Confidence 344445444 6789999999999988776655 445566666654211 1222222222222211 1 1
Q ss_pred CCCC-CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEccccC
Q 001047 237 DSAI-NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 237 d~~~-~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
+... -...+..+.--+.+..++.. -....+-=++|+|.-|++.+..--.-+..++.+.|++.++|+.|=+-|
T Consensus 99 ~~a~~l~q~~~~~~l~~l~~~L~~E-------la~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 99 DEAQTLLQKHQYVSLESLLSSLLNE-------LASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHH-------HHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 1110 00112222222333333321 001123358999999999998888889999999999999999987654
No 314
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.53 E-value=0.31 Score=66.23 Aligned_cols=119 Identities=17% Similarity=0.146 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCC---eEEEEcccHHHHHHHHHHHHHHhCCCeEEEEe
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR---RIFYTTPLKALSNQKFREFRETFGDNNVGLLT 235 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~---rvlvl~PtraLa~Q~~~~l~~~~g~~~v~llt 235 (1174)
++|+-|.+||. ..+++++|+|.-|||||.+..--++..+..+. ++++++=|++.+..+..++.+.+... +.--.
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~-~~~~p 77 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKA-LQQEP 77 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHH-HhcCc
Confidence 36889999998 36789999999999999998777777766543 69999999999999988888865431 00000
Q ss_pred CCC----CCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc
Q 001047 236 GDS----AINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 236 Gd~----~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~ 284 (1174)
... ....-...-|+|...+...+.+..... ..+ +-.+=|.||...
T Consensus 78 ~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~---l~l-dP~F~i~de~e~ 126 (1232)
T TIGR02785 78 NSKHLRRQLALLNTANISTLHSFCLKVIRKHYYL---LDL-DPSFRILTDTEQ 126 (1232)
T ss_pred hhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhh---cCC-CCCceeCCHHHH
Confidence 000 001123456889888776554432211 011 123446887765
No 315
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=92.49 E-value=0.3 Score=49.12 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHhcCCc---eEEEechh--hhhcCCcCC---ceEEEecccccC------------------CC----
Q 001047 508 GCLPIWKSFIEELFQRGLV---KVVFATET--LAAGINMPA---RTAVLSSLSKRT------------------AS---- 557 (1174)
Q Consensus 508 gl~~~~R~~v~~~F~~G~i---kVLVAT~t--la~GIDiP~---v~vVI~~~~k~~------------------~~---- 557 (1174)
+..+.+...+++.|++..- .||+|+.- +++|||+|+ ..+||.+.+.-. ..
T Consensus 27 ~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~ 106 (142)
T smart00491 27 GKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDE 106 (142)
T ss_pred CCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 3333455788888987543 69999987 999999998 356665533110 00
Q ss_pred CccccCHHHHHHhhcccCCCCCCCccEEEEEeC
Q 001047 558 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 590 (1174)
Q Consensus 558 ~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~ 590 (1174)
+..+.....+.|.+||+-|.. +..|.++++..
T Consensus 107 ~~~~~a~~~~~Qa~GR~iR~~-~D~g~i~l~D~ 138 (142)
T smart00491 107 VYLFDAMRALAQAIGRAIRHK-NDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHHHHHHhCccccCc-cceEEEEEEec
Confidence 112334566789999999976 45776666643
No 316
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.47 E-value=0.49 Score=55.53 Aligned_cols=88 Identities=13% Similarity=0.251 Sum_probs=55.8
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEE---
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIM--- 249 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~--- 249 (1174)
.|.-+++.+++|+|||+.....+......+.+++|+.-.. -..|+..+... ++-.. ..+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE-s~~qi~~Ra~r-lg~~~-------------~~l~l~~e~ 145 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE-SPEQIKLRADR-LGIST-------------ENLYLLAET 145 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc-CHHHHHHHHHH-cCCCc-------------ccEEEEccC
Confidence 4567899999999999988877766666778999987543 34555544443 33210 111121
Q ss_pred cHHHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 250 TTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 250 Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
..+.+.+.+.. .+.++||||+++.+.
T Consensus 146 ~le~I~~~i~~-----------~~~~lVVIDSIq~l~ 171 (372)
T cd01121 146 NLEDILASIEE-----------LKPDLVIIDSIQTVY 171 (372)
T ss_pred cHHHHHHHHHh-----------cCCcEEEEcchHHhh
Confidence 22344444421 267899999999874
No 317
>CHL00181 cbbX CbbX; Provisional
Probab=92.46 E-value=0.64 Score=52.65 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=19.3
Q ss_pred CCcEEEEccCCcchHHHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVA 197 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~ 197 (1174)
+-++++.||+|+|||.++-..+-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999998766443
No 318
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.45 E-value=0.5 Score=57.19 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=17.6
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
+.+|++||.|+|||.++.+.+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 368999999999999876554
No 319
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=92.30 E-value=0.43 Score=54.88 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=23.7
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Ptr 212 (1174)
.++|+.+|.|+|||.++.+..-.. +....-+..+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~ 83 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVT 83 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhh---CCceEEecccc
Confidence 489999999999999887654322 33444444443
No 320
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.17 E-value=0.52 Score=56.11 Aligned_cols=49 Identities=29% Similarity=0.391 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHcCC--cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 159 RIDKFQRSSIEAFLRGS--SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~--~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
.+++.|.+.+..+++.. -++|.||||||||+.. +.++..+..+.+-|++
T Consensus 241 g~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL-Y~~L~~ln~~~~nI~T 291 (500)
T COG2804 241 GMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL-YAALSELNTPERNIIT 291 (500)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH-HHHHHHhcCCCceEEE
Confidence 46888988888877653 5788999999999764 4555555554433443
No 321
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.14 E-value=0.21 Score=58.78 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=16.6
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++.||.|+|||..+...+
T Consensus 40 ~~L~~Gp~G~GKTtla~~la 59 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLA 59 (363)
T ss_pred EEEEecCCCCCHHHHHHHHH
Confidence 36899999999998886654
No 322
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.12 E-value=0.19 Score=49.19 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=16.2
Q ss_pred EEEEccCCcchHHHHHHHHH
Q 001047 177 VVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il 196 (1174)
+++.||.|+|||..+...+-
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 68999999999987765443
No 323
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=92.10 E-value=0.26 Score=58.74 Aligned_cols=127 Identities=13% Similarity=0.168 Sum_probs=74.1
Q ss_pred cEEEEccCCcchHHHHHHHHHH-HHh--cCCeEEEEcccHH-HHHHHHHHHHHHhCCCeE-EEEe-CCC----CCCC-CC
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVA-TVA--NQRRIFYTTPLKA-LSNQKFREFRETFGDNNV-GLLT-GDS----AINR-EA 244 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~-~l~--~g~rvlvl~Ptra-La~Q~~~~l~~~~g~~~v-~llt-Gd~----~~~~-~~ 244 (1174)
-.++.+..|||||.++...++. .+. .+.+++|+-|+.. |..-++..+...+....+ ..+. .+. .... +.
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i~~~~~g~ 82 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEIKILNTGK 82 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEEEecCCCe
Confidence 4678999999999887766554 444 5779999999886 777778888764432111 0111 111 0111 33
Q ss_pred cEEEEcH-HHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCC--CCccEEEEccccCCh
Q 001047 245 QILIMTT-EILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP--KEVQIICLSATVANA 317 (1174)
Q Consensus 245 ~IlV~Tp-e~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~--~~~qiI~LSATl~n~ 317 (1174)
.|++..- +...+ ......++++.+|||..+.. ..|.+++..+. .....+++|.||.++
T Consensus 83 ~i~f~g~~d~~~~-----------ik~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 83 KFIFKGLNDKPNK-----------LKSGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred EEEeecccCChhH-----------hhCcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 3444322 11111 11123479999999999853 36666665553 222258899998653
No 324
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.09 E-value=0.24 Score=54.01 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=69.9
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHHHhCC--------CeEEEEeCCCCCCCC
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVAN-QRRIFYTTPLKALSNQKFREFRETFGD--------NNVGLLTGDSAINRE 243 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~-g~rvlvl~PtraLa~Q~~~~l~~~~g~--------~~v~lltGd~~~~~~ 243 (1174)
.|..++|.||+|+|||+.+...+...+.+ |.+++|++- .+-..++.+.+.. +|- -.+.++.........
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~s-~g~d~~~~~~~g~l~~~d~~~~~~~~ 95 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMKS-FGWDLEEYEDSGKLKIIDAFPERIGW 95 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHHT-TTS-HHHHHHTTSEEEEESSGGGST-
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHHH-cCCcHHHHhhcCCEEEEecccccccc
Confidence 34689999999999999999988888888 999999873 2333555555554 331 113333322221110
Q ss_pred CcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc---c-CCcHHHHHHHHHHCCCCccEEEEcccc
Q 001047 244 AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS---D-ISRGTVWEEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 244 ~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~---d-~~~g~~~e~ii~~l~~~~qiI~LSATl 314 (1174)
. -..++.+...+..... -.+.++||||-...+. + ......+..+...+...-.++++++..
T Consensus 96 ~---~~~~~~l~~~i~~~i~-------~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~~ 160 (226)
T PF06745_consen 96 S---PNDLEELLSKIREAIE-------ELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSEM 160 (226)
T ss_dssp T---SCCHHHHHHHHHHHHH-------HHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred c---ccCHHHHHHHHHHHHH-------hcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 1 2234444443332110 0133899999988772 1 123334444544443333455565553
No 325
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.02 E-value=2.5 Score=51.08 Aligned_cols=54 Identities=19% Similarity=0.327 Sum_probs=33.8
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHH-HhcCC-eEEEEc--ccHHHHHHHHHHHHHHhC
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVAT-VANQR-RIFYTT--PLKALSNQKFREFRETFG 227 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~-l~~g~-rvlvl~--PtraLa~Q~~~~l~~~~g 227 (1174)
|+.+.+.||||+|||+.....+... ...|. ++.++. +-|.-+.+..+.+.+.+|
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilG 313 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILG 313 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhC
Confidence 4568899999999998776555433 34443 454332 334555566666666655
No 326
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.99 E-value=0.78 Score=47.27 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=59.8
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH-HhCCCeEEEEeCCCCCCCCCcEEEEcHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE-TFGDNNVGLLTGDSAINREAQILIMTTEIL 254 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~-~~g~~~v~lltGd~~~~~~~~IlV~Tpe~L 254 (1174)
.+|+.||.|+||+..+...+...+....... .+..-.-+. .+.. ...+ +..+..+... ..|- -+.+
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~-~c~~c~~c~----~~~~~~~~d--~~~~~~~~~~---~~i~---i~~i 87 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCSNPNED-PCGECRSCR----RIEEGNHPD--FIIIKPDKKK---KSIK---IDQI 87 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT---SSSHHHH----HHHTT-CTT--EEEEETTTSS---SSBS---HHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCCCHHHH----HHHhccCcc--eEEEeccccc---chhh---HHHH
Confidence 5799999999999887766554432221100 111111111 1111 1222 4444333221 1222 2445
Q ss_pred HHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEcccc
Q 001047 255 RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 255 ~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl 314 (1174)
+.+..... ....-...+++||||||.|.. .-...+.+++..-|.+..+|++|-.+
T Consensus 88 r~i~~~~~----~~~~~~~~KviiI~~ad~l~~-~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 88 REIIEFLS----LSPSEGKYKVIIIDEADKLTE-EAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp HHHHHHCT----SS-TTSSSEEEEEETGGGS-H-HHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHHHHHHH----HHHhcCCceEEEeehHhhhhH-HHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 54443311 122335789999999999974 23334444555556677777776554
No 327
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=91.82 E-value=0.32 Score=52.93 Aligned_cols=99 Identities=19% Similarity=0.232 Sum_probs=55.5
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcC------CeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEE
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQ------RRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g------~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~Il 247 (1174)
|+-+.|.+|+|+|||..+...+...+..+ .+++|+..-..+-.+....+...++.. .. ... ..|.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~-----~~--~~~--~~i~ 89 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLD-----PE--EVL--DNIY 89 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccc-----hh--hhh--ccEE
Confidence 46789999999999998887777766666 788888765433222222222222211 00 000 1122
Q ss_pred E---EcHHHHHHHHhcccccccCCCCCCceeEEEEcccccc
Q 001047 248 I---MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285 (1174)
Q Consensus 248 V---~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l 285 (1174)
+ .+++.+...+...... ..-.++++||||=+-.+
T Consensus 90 ~~~~~~~~~~~~~l~~~~~~----~~~~~~~lvVIDsis~l 126 (226)
T cd01393 90 VARPYNGEQQLEIVEELERI----MSSGRVDLVVVDSVAAL 126 (226)
T ss_pred EEeCCCHHHHHHHHHHHHHH----hhcCCeeEEEEcCcchh
Confidence 2 3455555554431110 11247899999987654
No 328
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.80 E-value=0.64 Score=48.09 Aligned_cols=131 Identities=14% Similarity=0.130 Sum_probs=67.6
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH-HHHHHHHhCCCeEEEEeCCCCCC-CCCcEEEEcHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQK-FREFRETFGDNNVGLLTGDSAIN-REAQILIMTTEI 253 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~-~~~l~~~~g~~~v~lltGd~~~~-~~~~IlV~Tpe~ 253 (1174)
-+.|..++|-|||.+++-.+++++..|.+|+++.=.|.-...= ..-+.. + .+.+-.+..+.... .+..- ....
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~-~-~~~~~~~g~g~~~~~~~~~~---~~~~ 81 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP-H-GVEFQVMGTGFTWETQNREA---DTAI 81 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh-c-CcEEEECCCCCeecCCCcHH---HHHH
Confidence 5678888999999999999999999999999886555321100 011122 2 22121111111111 11100 0111
Q ss_pred HHHHHhcccccccCCCCCCceeEEEEccccccccCCc--HHHHHHHHHHCCCCccEEEEccccC
Q 001047 254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISR--GTVWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 254 L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~--g~~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
..+.+.... ....-..+++||+||+=...+.+. ...+..++...|+...+|+..-.+|
T Consensus 82 ~~~~~~~a~----~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 82 AKAAWQHAK----EMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHH----HHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 111111111 111124789999999987664322 2234455666676666665554443
No 329
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.74 E-value=0.91 Score=57.01 Aligned_cols=138 Identities=20% Similarity=0.178 Sum_probs=85.3
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHH-h--------cCCeEEEEcccHHHHHHHHHHHHHHh--CCCeEEEEeC---CCCC
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATV-A--------NQRRIFYTTPLKALSNQKFREFRETF--GDNNVGLLTG---DSAI 240 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l-~--------~g~rvlvl~PtraLa~Q~~~~l~~~~--g~~~v~lltG---d~~~ 240 (1174)
+-.|+.-.-|-|||+.....++..- . .++..|+++|+ ++..||..++.+.. +...+.+++| +...
T Consensus 153 ~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~gr~kd~~e 231 (674)
T KOG1001|consen 153 RGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHGRTKDKSE 231 (674)
T ss_pred ccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecccccccch
Confidence 3578899999999988766655332 1 23467888886 78889999984322 2346777777 1122
Q ss_pred CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEccccC--ChH
Q 001047 241 NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVA--NAD 318 (1174)
Q Consensus 241 ~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~--n~~ 318 (1174)
-...+||++|+.++.+. ...--..-.||+||||.+...... .-...-.+. ....-.||+|+- +.+
T Consensus 232 l~~~dVVltTy~il~~~----------~l~~i~w~Riildea~~ikn~~tq--~~~a~~~L~-a~~RWcLtgtPiqn~~~ 298 (674)
T KOG1001|consen 232 LNSYDVVLTTYDILKNS----------PLVKIKWLRIVLDEAHTIKNKDTQ--IFKAVCQLD-AKYRWCLTGTPIQNNLD 298 (674)
T ss_pred hcCCceEEeeHHHhhcc----------cccceeEEEEEeccccccCCcchH--hhhhheeec-cceeeeecCChhhhhHH
Confidence 24678999999988741 111124557999999999754333 111111111 233567899974 235
Q ss_pred HHHHHHhc
Q 001047 319 ELAGWIGQ 326 (1174)
Q Consensus 319 ~~~~~l~~ 326 (1174)
+|..++..
T Consensus 299 ~lysl~~f 306 (674)
T KOG1001|consen 299 ELYSLFKF 306 (674)
T ss_pred HHHHHHHH
Confidence 55555443
No 330
>PRK05973 replicative DNA helicase; Provisional
Probab=91.60 E-value=0.21 Score=54.51 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=43.1
Q ss_pred HHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 001047 167 SIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 167 ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
..--+..|.-++|.|++|+|||+.++..+.....+|.+++|++---. ..|+.+++..
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes-~~~i~~R~~s 113 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT-EQDVRDRLRA 113 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHH
Confidence 33445567889999999999999998888888788888988864322 4566666655
No 331
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.51 E-value=0.61 Score=56.51 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=17.2
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il 196 (1174)
.+|++||+|+|||..+.+.+-
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 369999999999998876543
No 332
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.47 E-value=1.9 Score=51.23 Aligned_cols=124 Identities=23% Similarity=0.297 Sum_probs=65.9
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHH-hcC--CeEEEEccc-HHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEE
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATV-ANQ--RRIFYTTPL-KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILI 248 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l-~~g--~rvlvl~Pt-raLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV 248 (1174)
.|+.+.+.||||+|||+.....+...+ ..+ ...++...+ |.=+.++...+.+.+| ..+. .+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilG-vp~~--------------~v 254 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLG-VSVR--------------SI 254 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcC-Ccee--------------cC
Confidence 456788999999999987654443332 222 234444444 3444444555555554 1111 12
Q ss_pred EcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHH-HHHHHHHH---CCCCccEEEEccccCChHHHHHHH
Q 001047 249 MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT-VWEEIIIY---CPKEVQIICLSATVANADELAGWI 324 (1174)
Q Consensus 249 ~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~-~~e~ii~~---l~~~~qiI~LSATl~n~~~~~~~l 324 (1174)
.++..+...+.. +.+.++|+||.+=+. .+.. ..+++-.. .++.-.++.+|||. ...++.+++
T Consensus 255 ~~~~dl~~al~~----------l~~~d~VLIDTaGrs---qrd~~~~~~l~~l~~~~~~~~~~LVl~at~-~~~~~~~~~ 320 (420)
T PRK14721 255 KDIADLQLMLHE----------LRGKHMVLIDTVGMS---QRDQMLAEQIAMLSQCGTQVKHLLLLNATS-SGDTLDEVI 320 (420)
T ss_pred CCHHHHHHHHHH----------hcCCCEEEecCCCCC---cchHHHHHHHHHHhccCCCceEEEEEcCCC-CHHHHHHHH
Confidence 234444433332 457789999986332 1212 22332221 22334578899996 455555555
Q ss_pred h
Q 001047 325 G 325 (1174)
Q Consensus 325 ~ 325 (1174)
.
T Consensus 321 ~ 321 (420)
T PRK14721 321 S 321 (420)
T ss_pred H
Confidence 4
No 333
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.43 E-value=0.32 Score=55.81 Aligned_cols=54 Identities=24% Similarity=0.324 Sum_probs=39.0
Q ss_pred CCHHHHHHHHH-HHcCCcEEEEccCCcchHHHHHHHHHHHH---hcCCeEEEEcccHHH
Q 001047 160 IDKFQRSSIEA-FLRGSSVVVSAPTSSGKTLIAEAAAVATV---ANQRRIFYTTPLKAL 214 (1174)
Q Consensus 160 ~~~~Q~~ai~~-ll~g~~vlv~apTGsGKTlv~~~~il~~l---~~g~rvlvl~PtraL 214 (1174)
+++.|.+.+.. +..+++++|+|+||||||...- +++..+ ....+++++-.+.+|
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~-aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVN-AIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHH-HHHHhhhhcCCCceEEEEcCCCcc
Confidence 55778888875 4566899999999999996553 344432 345688888887766
No 334
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.39 E-value=0.26 Score=56.99 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=34.5
Q ss_pred HHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa 215 (1174)
+..+.+++|+||||||||+.. .+++..+....+++.+-.+.+|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll-~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMS-KTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHH-HHHHcccCCCCCEEEECCCcccc
Confidence 446789999999999999765 44566666677888888887764
No 335
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.32 E-value=1.2 Score=51.05 Aligned_cols=113 Identities=24% Similarity=0.268 Sum_probs=65.4
Q ss_pred CcCChHHHhhcCCCCCCHHHHHHHH-HHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q 001047 145 EMIDVDELASIYDFRIDKFQRSSIE-AFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFR 223 (1174)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~~Q~~ai~-~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~ 223 (1174)
.+.....+.+ ++ .+++.|..-+. ++..+++++++++||||||... .+++..+....+++.+--|.++.-
T Consensus 115 ~~~t~~~l~~-~g-t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~l-nall~~Ip~~~rivtIEdt~E~~~------- 184 (312)
T COG0630 115 EPITPEDLIE-YG-TISPEQAAYLWLAIEARKSIIICGGTASGKTTLL-NALLDFIPPEERIVTIEDTPELKL------- 184 (312)
T ss_pred CCCCHHHHhh-cC-CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHH-HHHHHhCCchhcEEEEeccccccC-------
Confidence 3344444444 22 35555555444 4567789999999999999753 556666667778888876654432
Q ss_pred HHhCCCeEEEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc
Q 001047 224 ETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 224 ~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~ 284 (1174)
..+..+.+.+...... .. =|.....|...+. .+.++||++|++-
T Consensus 185 --~~~n~~~l~~r~~~~~-~~--~v~~~dll~aalR------------~rPd~IivgEvrg 228 (312)
T COG0630 185 --PHENWVQLVTREGESG-SS--EVSLEDLLRAALR------------QRPDYIIVGELRG 228 (312)
T ss_pred --CCCCEEEEEecCCCCC-cc--ccCHHHHHHHHHh------------cCCCeEEEeeeec
Confidence 1223355555433211 11 1222333333332 3678999999965
No 336
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.28 E-value=2.1 Score=51.07 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=64.8
Q ss_pred cEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTE 252 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe 252 (1174)
.+++++++|+|||+++.-.+.... ..|.+++++. +.|+-+.++.+.+....+- -.+..... ..|.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gv---p~~~~~~~---------~~P~ 168 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGV---PVFALGKG---------QSPV 168 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCC---ceEecCCC---------CCHH
Confidence 578899999999998776665543 4567776654 4556566656666554441 11211110 1122
Q ss_pred -HHHHHHhcccccccCCCCCCceeEEEEcccccccc-CCcHHHHHHHHHHCCCCccEEEEccccC
Q 001047 253 -ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD-ISRGTVWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 253 -~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d-~~~g~~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
...+.+.. ....++++||+|=+-++.. ...-..+..+...+.++--++.++||.+
T Consensus 169 ~i~~~al~~--------~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg 225 (428)
T TIGR00959 169 EIARRALEY--------AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG 225 (428)
T ss_pred HHHHHHHHH--------HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch
Confidence 22222211 0123678999998877541 1112233333334444444777888864
No 337
>PHA00350 putative assembly protein
Probab=91.23 E-value=1.1 Score=52.77 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=23.1
Q ss_pred EEEEccCCcchHHHHHH-HHHHHHhcCCeE
Q 001047 177 VVVSAPTSSGKTLIAEA-AAVATVANQRRI 205 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~-~il~~l~~g~rv 205 (1174)
.++.|..|||||+-+.. -|+.++..|+++
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR~V 33 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGRKV 33 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCCEE
Confidence 47899999999998876 477777777644
No 338
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.22 E-value=0.73 Score=56.35 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=16.5
Q ss_pred EEEEccCCcchHHHHHHHHH
Q 001047 177 VVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il 196 (1174)
+|++||.|+|||+++...+-
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~ 58 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAM 58 (504)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 49999999999998865443
No 339
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.20 E-value=2.4 Score=49.19 Aligned_cols=55 Identities=25% Similarity=0.247 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHH-cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q 001047 160 IDKFQRSSIEAFL-RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215 (1174)
Q Consensus 160 ~~~~Q~~ai~~ll-~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa 215 (1174)
+++.+.+.+..+. .+.+++|+++||||||...- +++..+....+++++--+.+|.
T Consensus 163 ~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~-al~~~i~~~~riv~iEd~~El~ 218 (340)
T TIGR03819 163 FPPGVARLLRAIVAARLAFLISGGTGSGKTTLLS-ALLALVAPDERIVLVEDAAELR 218 (340)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHH-HHHccCCCCCcEEEECCcceec
Confidence 4456667776655 45799999999999997653 3444555566788877776663
No 340
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.18 E-value=0.48 Score=54.78 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=33.5
Q ss_pred HHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa 215 (1174)
+..+.+++|+|+||||||+.. .+++..+....+++.+--+.+|.
T Consensus 157 v~~~~nili~G~tgSGKTTll-~aL~~~ip~~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFT-NAALREIPAIERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHH-HHHHhhCCCCCeEEEecCCCccc
Confidence 346689999999999999765 45667777777888876666654
No 341
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=91.15 E-value=0.85 Score=52.27 Aligned_cols=139 Identities=14% Similarity=0.134 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHH----cCC---cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH-HhCCCe
Q 001047 159 RIDKFQRSSIEAFL----RGS---SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE-TFGDNN 230 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll----~g~---~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~-~~g~~~ 230 (1174)
.+.|+|..++..+. +|+ -+++.||.|.||+..+...+-..+-.+...-=-++. .+.+.. .+++
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~-------c~~~~~g~HPD-- 74 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRT-------RQLIAAGTHPD-- 74 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchH-------HHHHhcCCCCC--
Confidence 46678888877655 443 588999999999988766544333222110000111 111111 1222
Q ss_pred EEEEe---CCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccE
Q 001047 231 VGLLT---GDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307 (1174)
Q Consensus 231 v~llt---Gd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qi 307 (1174)
+..+. .+........|. .+.++.+..... ........+++|||+||.|....... +-+++.--|.+..+
T Consensus 75 ~~~i~~~p~~~~~k~~~~I~---idqIR~l~~~~~----~~p~~g~~kV~iI~~ae~m~~~AaNa-LLKtLEEPp~~~~f 146 (319)
T PRK08769 75 LQLVSFIPNRTGDKLRTEIV---IEQVREISQKLA----LTPQYGIAQVVIVDPADAINRAACNA-LLKTLEEPSPGRYL 146 (319)
T ss_pred EEEEecCCCccccccccccc---HHHHHHHHHHHh----hCcccCCcEEEEeccHhhhCHHHHHH-HHHHhhCCCCCCeE
Confidence 33331 110001112233 333443332110 12334578999999999997432222 23344443556666
Q ss_pred EEEcccc
Q 001047 308 ICLSATV 314 (1174)
Q Consensus 308 I~LSATl 314 (1174)
|++|.-+
T Consensus 147 iL~~~~~ 153 (319)
T PRK08769 147 WLISAQP 153 (319)
T ss_pred EEEECCh
Confidence 6666443
No 342
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=91.00 E-value=0.55 Score=49.91 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=19.3
Q ss_pred EEEEccCCcchHHHHHHH-HHHHHhcCCeEEE
Q 001047 177 VVVSAPTSSGKTLIAEAA-AVATVANQRRIFY 207 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~-il~~l~~g~rvlv 207 (1174)
.+++|..|||||+-+..- +...+..|+.++.
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t 34 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT 34 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE
Confidence 478999999999988777 6666666655544
No 343
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=90.98 E-value=0.79 Score=55.11 Aligned_cols=40 Identities=23% Similarity=0.398 Sum_probs=31.2
Q ss_pred HHHcCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEc
Q 001047 170 AFLRGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTT 209 (1174)
Q Consensus 170 ~ll~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~ 209 (1174)
-+..|.-++|.|+||+|||..++..+.... ..+..++|++
T Consensus 190 G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS 230 (421)
T TIGR03600 190 GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS 230 (421)
T ss_pred CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 344567889999999999988877766554 5677888886
No 344
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=90.91 E-value=1.1 Score=54.61 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=17.8
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il 196 (1174)
.+|++||.|+|||.++-+.+-
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999998876543
No 345
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.88 E-value=0.43 Score=50.36 Aligned_cols=52 Identities=21% Similarity=0.258 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHH-cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q 001047 159 RIDKFQRSSIEAFL-RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll-~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Pt 211 (1174)
.+++.|.+.+.... .+..+++++|||||||+..- .++..+....+++.+--.
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~-aL~~~i~~~~~~i~ied~ 61 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLLN-ALLAFIPPDERIITIEDT 61 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHH-HHHhhcCCCCCEEEECCc
Confidence 35677888887644 67899999999999998763 344555555566655443
No 346
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.87 E-value=0.97 Score=55.28 Aligned_cols=114 Identities=21% Similarity=0.211 Sum_probs=56.6
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhc-CC--eEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVAN-QR--RIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTE 252 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~-g~--rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe 252 (1174)
..|++||.|+|||.++...+-..+.. +. .....|+. ...+.. .....++.++...+ + ..+
T Consensus 38 ayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~-------C~~~~~---~~h~dv~eldaas~----~---gId 100 (535)
T PRK08451 38 AYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ-------CQSALE---NRHIDIIEMDAASN----R---GID 100 (535)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH-------HHHHhh---cCCCeEEEeccccc----c---CHH
Confidence 35899999999998886654333221 11 11112211 111111 11122233322111 1 235
Q ss_pred HHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 253 ~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
.+++.+.... .........+|||||||.|...... .+...+..-|+.+.+|+.+
T Consensus 101 ~IRelie~~~----~~P~~~~~KVvIIDEad~Lt~~A~N-ALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 101 DIRELIEQTK----YKPSMARFKIFIIDEVHMLTKEAFN-ALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred HHHHHHHHHh----hCcccCCeEEEEEECcccCCHHHHH-HHHHHHhhcCCceEEEEEE
Confidence 5666554311 1223467899999999999743222 2333444446666666655
No 347
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=90.86 E-value=0.19 Score=52.52 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=29.2
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Ptr 212 (1174)
-.++.||.+||||.-.+.-+...-..+.+++++-|..
T Consensus 3 l~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~ 39 (176)
T PF00265_consen 3 LEFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAI 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEEST
T ss_pred EEEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 3578999999999887776666666789999999953
No 348
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.72 E-value=0.62 Score=57.72 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=24.6
Q ss_pred CCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 271 l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
..+..++||||||+|....+.. +.+.+..-|..+.+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~NA-LLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGFNA-LLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHHHHH-HHHHHhcCCCCeEEEEEe
Confidence 4578999999999997533222 223333344555555554
No 349
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=90.72 E-value=0.52 Score=53.44 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=49.2
Q ss_pred HhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCC-cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHH
Q 001047 140 KEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGS-SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216 (1174)
Q Consensus 140 ~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~-~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~ 216 (1174)
..|...+..+..+-+.. .+++-|...+..+...+ ++||++.||||||+.. .++...+....|+|.+--|.+|--
T Consensus 140 RKf~k~~ltl~dli~~g--t~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-Nal~~~i~~~eRvItiEDtaELql 214 (355)
T COG4962 140 RKFPKIKLTLLDLIIFG--TMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-NALSGFIDSDERVITIEDTAELQL 214 (355)
T ss_pred cccccccccHHHHHHcC--CcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-HHHHhcCCCcccEEEEeehhhhcc
Confidence 33444444444333322 47788888888877765 9999999999999753 233344445669999988877643
No 350
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=90.69 E-value=0.69 Score=54.25 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=25.7
Q ss_pred HHHHcCCcEEEEccCCcchHHHHHHHHHH-HHhcC
Q 001047 169 EAFLRGSSVVVSAPTSSGKTLIAEAAAVA-TVANQ 202 (1174)
Q Consensus 169 ~~ll~g~~vlv~apTGsGKTlv~~~~il~-~l~~g 202 (1174)
+.+.++.|++..+|+|+|||.+|...... ++..|
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG 238 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG 238 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC
Confidence 66678899999999999999777654444 44455
No 351
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.59 E-value=0.41 Score=61.03 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=16.6
Q ss_pred EEEEccCCcchHHHHHHHHH
Q 001047 177 VVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il 196 (1174)
+|++||.|+|||.++-+.+-
T Consensus 41 yLFtGPpGtGKTTLARiLAk 60 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAK 60 (944)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999998866543
No 352
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=90.59 E-value=1.4 Score=46.51 Aligned_cols=29 Identities=34% Similarity=0.463 Sum_probs=20.9
Q ss_pred HHHcC---CcEEEEccCCcchHHHHHHHHHHH
Q 001047 170 AFLRG---SSVVVSAPTSSGKTLIAEAAAVAT 198 (1174)
Q Consensus 170 ~ll~g---~~vlv~apTGsGKTlv~~~~il~~ 198 (1174)
.+.++ ..+++.||+|+|||..+...+...
T Consensus 7 ~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 7 ALEKGRLAHAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred HHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34454 358899999999998876654443
No 353
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=90.46 E-value=0.69 Score=60.01 Aligned_cols=80 Identities=15% Similarity=0.291 Sum_probs=67.8
Q ss_pred HHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCC-----------CCCCCcEEEEcHHHHHHHHhcccc
Q 001047 195 AVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSA-----------INREAQILIMTTEILRNMLYQSVG 263 (1174)
Q Consensus 195 il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~ 263 (1174)
|++.+.+|++++|+.|..+=..++...+++..+..++++.+|-.. .+.+.+|+|||+ ++..
T Consensus 796 I~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-----IIEt--- 867 (1139)
T COG1197 796 ILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-----IIET--- 867 (1139)
T ss_pred HHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-----eeec---
Confidence 344456799999999999999999999999999999999999875 356899999997 4443
Q ss_pred cccCCCCCCceeEEEEccccccc
Q 001047 264 MVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 264 ~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
...+.+...+||+-||+++
T Consensus 868 ----GIDIPnANTiIIe~AD~fG 886 (1139)
T COG1197 868 ----GIDIPNANTIIIERADKFG 886 (1139)
T ss_pred ----CcCCCCCceEEEecccccc
Confidence 4567889999999999975
No 354
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.45 E-value=0.89 Score=56.04 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=24.8
Q ss_pred CCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 270 ~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
...+.+++||||||.|....+.. +.+.+..-|..+.+|+.|
T Consensus 116 ~~~~~kVvIIDEad~ls~~a~na-LLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 116 TRGRFKVYIIDEVHMLSKSAFNA-MLKTLEEPPEHVKFILAT 156 (527)
T ss_pred ccCCceEEEEcCcccCCHHHHHH-HHHHHhCCCCCEEEEEEe
Confidence 34578899999999997533322 223333334556566654
No 355
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.35 E-value=0.64 Score=57.07 Aligned_cols=40 Identities=28% Similarity=0.232 Sum_probs=24.6
Q ss_pred CCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 271 l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
..+..++||||||+|....+. .+...+..-|..+.+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a~n-aLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFN-ALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHHHH-HHHHHHhcCCCCceEEEEE
Confidence 457789999999999753222 2333344444556566554
No 356
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=90.26 E-value=0.56 Score=58.18 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=55.0
Q ss_pred CCCCCCHHHHHHHHHHHcC--CcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHH-HHHHHHh
Q 001047 156 YDFRIDKFQRSSIEAFLRG--SSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKF-REFRETF 226 (1174)
Q Consensus 156 ~~~~~~~~Q~~ai~~ll~g--~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~-~~l~~~~ 226 (1174)
+.+..+|||.+.+.++... +.|++..++-+|||.+.+..+...+. ....++++.||..++.... .+|.-.+
T Consensus 13 w~~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 13 WRTDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCCCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHH
Confidence 4457899999999998765 58999999999999977666554443 3458999999999999876 3444433
No 357
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.22 E-value=2.2 Score=50.07 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=26.6
Q ss_pred CCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEcccc
Q 001047 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 270 ~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl 314 (1174)
......+|||||+|.|.... ...+.+++..-+....+|++|..+
T Consensus 138 ~~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 138 AEGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ccCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECCc
Confidence 34578899999999986422 223334444444455566655554
No 358
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.22 E-value=1.7 Score=55.82 Aligned_cols=35 Identities=29% Similarity=0.312 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHc--CCcEEEEccCCcchHHHHHHHHH
Q 001047 162 KFQRSSIEAFLR--GSSVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 162 ~~Q~~ai~~ll~--g~~vlv~apTGsGKTlv~~~~il 196 (1174)
+.=.+.+..+.+ ..++++.||+|+|||.++.....
T Consensus 193 ~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 193 KELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred HHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 333444554444 36999999999999998766543
No 359
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=90.17 E-value=0.73 Score=57.40 Aligned_cols=41 Identities=24% Similarity=0.241 Sum_probs=25.6
Q ss_pred CCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 270 ~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
.....++|||||+|.|....+. .+.+.+..-+..+.+|+.+
T Consensus 129 ~~a~~KVvIIDEad~Ls~~a~n-aLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 129 VSARYKVYIIDEVHMLSTAAFN-ALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred hcCCcEEEEEEChHhCCHHHHH-HHHHHHHhCCCCeEEEEEe
Confidence 4567899999999999743322 2223344445566666654
No 360
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.14 E-value=1.4 Score=56.69 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=19.6
Q ss_pred CcEEEEccCCcchHHHHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVAT 198 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~ 198 (1174)
.++|+.||+|+|||.++...+...
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999886655443
No 361
>PRK06620 hypothetical protein; Validated
Probab=90.04 E-value=0.65 Score=50.22 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=16.0
Q ss_pred CcEEEEccCCcchHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~ 193 (1174)
+.+++.||+|+|||.....
T Consensus 45 ~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999977653
No 362
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=90.03 E-value=0.34 Score=59.15 Aligned_cols=153 Identities=16% Similarity=0.191 Sum_probs=92.5
Q ss_pred CCCHHHHHHHHHHHc--------CC--cEEEEccCCcch--HHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHh
Q 001047 159 RIDKFQRSSIEAFLR--------GS--SVVVSAPTSSGK--TLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETF 226 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~--------g~--~vlv~apTGsGK--Tlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~ 226 (1174)
.+...|.+|+-...+ |. -+||--..|-|| |++. +..-..++..+++|+++-...|-..-.++++..
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAg-iIfeNyLkGRKrAlW~SVSsDLKfDAERDL~Di- 341 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAG-IIFENYLKGRKRALWFSVSSDLKFDAERDLRDI- 341 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEE-EEehhhhcccceeEEEEeccccccchhhchhhc-
Confidence 467789988865442 22 356655556665 4333 333455666679999999888888887888773
Q ss_pred CC----------CeEEEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCC-----CCC--CceeEEEEcccccccc--
Q 001047 227 GD----------NNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSE-----SGL--FDVDVIVLDEVHYLSD-- 287 (1174)
Q Consensus 227 g~----------~~v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~-----~~l--~~v~lVIiDEaH~l~d-- 287 (1174)
|. .+.+-+.++...+-.--|+++|+-.|.-.-....+..+.. .|+ .-=++|||||||.--.
T Consensus 342 gA~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL~ 421 (1300)
T KOG1513|consen 342 GATGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNLV 421 (1300)
T ss_pred CCCCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcccc
Confidence 32 2233444544444456799999987654332111100000 000 1126899999997542
Q ss_pred -------CCcHHHHHHHHHHCCCCccEEEEcccc
Q 001047 288 -------ISRGTVWEEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 288 -------~~~g~~~e~ii~~l~~~~qiI~LSATl 314 (1174)
...|..+.++-..+| +.++|.-|||=
T Consensus 422 p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 422 PTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred cccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 134566666667776 68899999993
No 363
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=90.00 E-value=0.41 Score=58.49 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=45.4
Q ss_pred HHHHHHHc-----CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 001047 166 SSIEAFLR-----GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 166 ~ai~~ll~-----g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
..++.++. |..++|.+|+|+|||+.++..+...+.+|.+++|++ .-+-..|+.++...
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~ 312 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYS 312 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHH
Confidence 34566554 467899999999999999999888888898999987 45566677766655
No 364
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.99 E-value=1.2 Score=53.20 Aligned_cols=21 Identities=29% Similarity=0.218 Sum_probs=17.4
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il 196 (1174)
.+|++||.|+|||.++...+-
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999998876543
No 365
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=89.95 E-value=0.79 Score=56.53 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=17.9
Q ss_pred CcEEEEccCCcchHHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il 196 (1174)
+.+|++||.|+|||..+...+-
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999998876543
No 366
>PRK04328 hypothetical protein; Provisional
Probab=89.94 E-value=0.56 Score=52.05 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=38.3
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
.|..++|.+++|+|||..+...+.+.+.+|.+++|++ +-+-..++.+.+..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~ 72 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQ 72 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHH
Confidence 3568899999999999998888888888899999886 33334444444443
No 367
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.91 E-value=2.6 Score=48.32 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=16.8
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++.||+|+|||.++...+
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~ 59 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALA 59 (319)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999998876543
No 368
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.91 E-value=0.31 Score=56.90 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=22.4
Q ss_pred HHcCCcEEEEccCCcchHHHHHHHHHHHHhc
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEAAAVATVAN 201 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~~il~~l~~ 201 (1174)
+-.|+.++|.||+|+|||+.... +...+..
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~-i~~~I~~ 194 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQK-IAQAITR 194 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHH-HHHhhcc
Confidence 34788999999999999987654 4444443
No 369
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=89.89 E-value=1.9 Score=52.04 Aligned_cols=150 Identities=13% Similarity=0.210 Sum_probs=85.1
Q ss_pred hcCCCCCCHHHHHHHHHHHc------C----CcEEEEccCCcchHHHHHHHHH-HHH---hcCCeEEEEcccHHHHHHHH
Q 001047 154 SIYDFRIDKFQRSSIEAFLR------G----SSVVVSAPTSSGKTLIAEAAAV-ATV---ANQRRIFYTTPLKALSNQKF 219 (1174)
Q Consensus 154 ~~~~~~~~~~Q~~ai~~ll~------g----~~vlv~apTGsGKTlv~~~~il-~~l---~~g~rvlvl~PtraLa~Q~~ 219 (1174)
.-+++.+-|||.-++..|+. | +..+|..|-+-|||..+...+. ..+ ..+..+.+++|+.+-+.+.+
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhh
Confidence 45677899999999999881 2 3579999999999976542222 211 46789999999999888888
Q ss_pred HHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHH---HHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHH
Q 001047 220 REFRETFGDNNVGLLTGDSAINREAQILIMTTE---ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEE 296 (1174)
Q Consensus 220 ~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe---~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ 296 (1174)
...+...-... . ++ ...+-..+-..++.. .....+.... +...=.+..+.|+||.|...+. +..+..
T Consensus 136 ~~ar~mv~~~~-~-l~--~~~~~q~~s~~i~~~~~~s~ik~~aa~~----~~~Dg~~~~~~I~DEih~f~~~--~~~~~~ 205 (546)
T COG4626 136 NPARDMVKRDD-D-LR--DLCNVQTHSRTITHRKTDSTIKAVAADP----NTVDGLNSVGAIIDELHLFGKQ--EDMYSE 205 (546)
T ss_pred HHHHHHHHhCc-c-hh--hhhccccceeEEEecccceeeeeeccCC----CcccCCCcceEEEehhhhhcCH--HHHHHH
Confidence 77776432211 0 00 000111111111111 1111111111 1112236779999999998753 233333
Q ss_pred HHHH--CCCCccEEEEccc
Q 001047 297 IIIY--CPKEVQIICLSAT 313 (1174)
Q Consensus 297 ii~~--l~~~~qiI~LSAT 313 (1174)
+..- ..++.+++..|--
T Consensus 206 ~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 206 AKGGLGARPEGLVVYITTS 224 (546)
T ss_pred HHhhhccCcCceEEEEecC
Confidence 3322 2346677777653
No 370
>PRK08506 replicative DNA helicase; Provisional
Probab=89.87 E-value=0.98 Score=54.97 Aligned_cols=109 Identities=17% Similarity=0.238 Sum_probs=62.3
Q ss_pred HHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEE-EEeCCCCC---------
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG-LLTGDSAI--------- 240 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~-lltGd~~~--------- 240 (1174)
+..|.-++|.|.||.|||..++..+.+.+..|..++|++.- .=..|+..++-....++... +..|....
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a 267 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDA 267 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 33556788999999999998888877777778888887542 33445555554433222111 11122110
Q ss_pred ---CCCCcEEE-----EcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 241 ---NREAQILI-----MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 241 ---~~~~~IlV-----~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
-.+.++.| .|+..++..+.+.. . ....+++||||=.+.|.
T Consensus 268 ~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~----~--~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 268 CDELSKKKLFVYDSGYVNIHQVRAQLRKLK----S--QHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHcCCeEEECCCCCCHHHHHHHHHHHH----H--hCCCCCEEEEcChhhcc
Confidence 01233443 35555554443210 0 11258999999999886
No 371
>PRK06904 replicative DNA helicase; Validated
Probab=89.76 E-value=1.3 Score=53.83 Aligned_cols=135 Identities=16% Similarity=0.183 Sum_probs=72.8
Q ss_pred HHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEE-EEeC-CCC--------
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKFREFRETFGDNNVG-LLTG-DSA-------- 239 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~-lltG-d~~-------- 239 (1174)
+..|.-++|.|.||.|||..++-.+..... .+..|+|++.- .=..|+..++-...+.+... +..| ..+
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~ 296 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLE-MPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKIS 296 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHH
Confidence 445567888999999999877655555443 47778777543 34455555555544332211 1122 111
Q ss_pred -----CCCCCcEEE-----EcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccC----CcHHHHHHHHHHC----
Q 001047 240 -----INREAQILI-----MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI----SRGTVWEEIIIYC---- 301 (1174)
Q Consensus 240 -----~~~~~~IlV-----~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~----~~g~~~e~ii~~l---- 301 (1174)
.....++.| .|+..++....+.. .....+++||||=.+.|... .+...+.++...+
T Consensus 297 ~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~------~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lA 370 (472)
T PRK06904 297 STVGMFKQKPNLYIDDSSGLTPTELRSRARRVY------RENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALA 370 (472)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH------HhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 112334555 35555554433210 01125889999999888632 2333444443322
Q ss_pred -CCCccEEEEcc
Q 001047 302 -PKEVQIICLSA 312 (1174)
Q Consensus 302 -~~~~qiI~LSA 312 (1174)
.-++.+|++|-
T Consensus 371 kel~ipVi~lsQ 382 (472)
T PRK06904 371 KELKVPVVALSQ 382 (472)
T ss_pred HHhCCeEEEEEe
Confidence 12566777773
No 372
>PRK13342 recombination factor protein RarA; Reviewed
Probab=89.66 E-value=1.1 Score=53.57 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=17.0
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
.++++.||+|+|||.++...
T Consensus 37 ~~ilL~GppGtGKTtLA~~i 56 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARII 56 (413)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 37899999999999887654
No 373
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.65 E-value=1.2 Score=55.68 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=24.8
Q ss_pred CCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 270 ~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
...+.+++||||+|+|....+. .+.+.+..-|.++.+|+.+
T Consensus 116 ~~~~~KVvIIdev~~Lt~~a~n-aLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 116 SRSRYKIFIIDEVHMLSTNAFN-ALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred ccCCceEEEEEChhhCCHHHHH-HHHHHHHcCCCCeEEEEEe
Confidence 3457899999999999753322 2333344444555555544
No 374
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=89.54 E-value=0.48 Score=51.73 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=16.1
Q ss_pred EEechhhhhcCCcCCceEEEe
Q 001047 529 VFATETLAAGINMPARTAVLS 549 (1174)
Q Consensus 529 LVAT~tla~GIDiP~v~vVI~ 549 (1174)
-+.|-.-+.|..++.+.+|+.
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~ 204 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLL 204 (234)
T ss_pred ceechHHcceEEeCCEEEEEC
Confidence 355666688999999888877
No 375
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=89.50 E-value=1.2 Score=51.21 Aligned_cols=120 Identities=17% Similarity=0.166 Sum_probs=57.3
Q ss_pred Cc-EEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH-HhCCC-eEEEEeCCCCCCCCCcEEEEcH
Q 001047 175 SS-VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE-TFGDN-NVGLLTGDSAINREAQILIMTT 251 (1174)
Q Consensus 175 ~~-vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~-~~g~~-~v~lltGd~~~~~~~~IlV~Tp 251 (1174)
.. +++.||.|+|||..+...+-.....+... .-.+... ..... ..|.. .+..++.... ...+ .+.
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~-~~~~~~~------~~~~~~~~~~~~d~lel~~s~~--~~~~---i~~ 91 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTG-LLPCGHC------RSCKLIPAGNHPDFLELNPSDL--RKID---IIV 91 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCccc-CCcccch------hhhhHHhhcCCCceEEeccccc--CCCc---chH
Confidence 45 99999999999998765554433222110 0011110 01111 01111 2333322211 1122 334
Q ss_pred HHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 252 EILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 252 e~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
+.++.+..... .........+||||||+.|.. ..+..+..++..-+.+..+|+.+
T Consensus 92 ~~vr~~~~~~~----~~~~~~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 92 EQVRELAEFLS----ESPLEGGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred HHHHHHHHHhc----cCCCCCCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEc
Confidence 44444443211 122246789999999999975 34444444444444455455444
No 376
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=89.49 E-value=1.8 Score=52.32 Aligned_cols=89 Identities=19% Similarity=0.204 Sum_probs=57.0
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCC--eEEEEeCCCCCCCCCcEEEEc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDN--NVGLLTGDSAINREAQILIMT 250 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~--~v~lltGd~~~~~~~~IlV~T 250 (1174)
.|.-+++.+++|+|||+.+...+.....++.+++|+..- +-..|+..+... +|-. ++.++. . .+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E-Es~~qi~~ra~r-lg~~~~~l~~~~-------e-----~~ 158 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE-ESLQQIKMRAIR-LGLPEPNLYVLS-------E-----TN 158 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc-CCHHHHHHHHHH-cCCChHHeEEcC-------C-----CC
Confidence 456889999999999999888777766777889999864 334565554443 3311 111111 0 13
Q ss_pred HHHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 251 TEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 251 pe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
.+.+...+.. .+.++||||.+..+.
T Consensus 159 ~~~I~~~i~~-----------~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 159 WEQICANIEE-----------ENPQACVIDSIQTLY 183 (454)
T ss_pred HHHHHHHHHh-----------cCCcEEEEecchhhc
Confidence 3455544432 256899999998764
No 377
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.37 E-value=0.71 Score=51.63 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHc--CCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEccc
Q 001047 159 RIDKFQRSSIEAFLR--GSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPL 211 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~--g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~Pt 211 (1174)
.+.+.|.+.+..+.. +..++|++|||||||+..- .++..+. .+.+++.+--.
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~-all~~i~~~~~~iitiEdp 117 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLY-SALSELNTPEKNIITVEDP 117 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHH-HHHhhhCCCCCeEEEECCC
Confidence 466778888876654 3468999999999998764 3444554 34566665433
No 378
>PRK05748 replicative DNA helicase; Provisional
Probab=89.26 E-value=0.95 Score=54.85 Aligned_cols=135 Identities=19% Similarity=0.176 Sum_probs=72.9
Q ss_pred HcCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEE-EEeCCCCCC--------
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSNQKFREFRETFGDNNVG-LLTGDSAIN-------- 241 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~-lltGd~~~~-------- 241 (1174)
..|.-++|.|+||+|||..++..+.+.. ..|..++|++. -.-..|+..++....+.+... +..|.....
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSl-Ems~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a 279 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSL-EMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIA 279 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeC-CCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence 3456789999999999998887776654 34777777653 233445556654444433222 112221100
Q ss_pred ----CCCcEEE-----EcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccC-----CcHHHHHHHHHHC-----C
Q 001047 242 ----REAQILI-----MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI-----SRGTVWEEIIIYC-----P 302 (1174)
Q Consensus 242 ----~~~~IlV-----~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~-----~~g~~~e~ii~~l-----~ 302 (1174)
.+.++.| .|++.++..+.+.. .. ..++++||||=.|.|... .+...+..+...+ .
T Consensus 280 ~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~----~~--~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke 353 (448)
T PRK05748 280 MGSLSDAPIYIDDTPGIKVTEIRARCRRLA----QE--HGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKE 353 (448)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHH----Hh--cCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 1233444 24555554443210 00 126889999999988521 2233333443332 1
Q ss_pred CCccEEEEccc
Q 001047 303 KEVQIICLSAT 313 (1174)
Q Consensus 303 ~~~qiI~LSAT 313 (1174)
-++.+|++|-.
T Consensus 354 ~~i~vi~lsQl 364 (448)
T PRK05748 354 LKVPVIALSQL 364 (448)
T ss_pred hCCeEEEeccc
Confidence 25667777765
No 379
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=89.25 E-value=2.8 Score=49.08 Aligned_cols=125 Identities=11% Similarity=0.274 Sum_probs=76.7
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVA--NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTT 251 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~--~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tp 251 (1174)
.+.+.+.|+.|.|||...-+. ...+. .+.| ++.-+-+.++++++.+.-+. . ++ -+
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f-~~~lp~~~k~R----~HFh~Fm~~vh~~l~~~~~~---------~----~~-----l~ 118 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLF-YDSLPIKRKRR----VHFHEFMLDVHSRLHQLRGQ---------D----DP-----LP 118 (362)
T ss_pred CceEEEECCCCCchhHHHHHH-HHhCCcccccc----ccccHHHHHHHHHHHHHhCC---------C----cc-----HH
Confidence 467999999999999865443 22222 2223 24457788888888775311 0 00 12
Q ss_pred HHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC-CCCccEEEEccccCC--------hHHHHH
Q 001047 252 EILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC-PKEVQIICLSATVAN--------ADELAG 322 (1174)
Q Consensus 252 e~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l-~~~~qiI~LSATl~n--------~~~~~~ 322 (1174)
.....+ ..+..+|.|||.|-- |..-...+..++..+ ..++-+|+.|-++|+ -+.|.-
T Consensus 119 ~va~~l-------------~~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp 184 (362)
T PF03969_consen 119 QVADEL-------------AKESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLP 184 (362)
T ss_pred HHHHHH-------------HhcCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHH
Confidence 222222 236779999999863 334455566665543 567888888888764 256777
Q ss_pred HHhcccCceeeec
Q 001047 323 WIGQIHGKTELIT 335 (1174)
Q Consensus 323 ~l~~~~~~~~~i~ 335 (1174)
++..+...|.++.
T Consensus 185 ~I~~l~~~~~vv~ 197 (362)
T PF03969_consen 185 FIDLLKRRCDVVE 197 (362)
T ss_pred HHHHHHhceEEEE
Confidence 7776666666654
No 380
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=89.19 E-value=1.7 Score=57.03 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=18.4
Q ss_pred CcEEEEccCCcchHHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il 196 (1174)
.+.++.||+|+|||.++...+.
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999988865443
No 381
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=89.03 E-value=0.82 Score=52.99 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=17.6
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
..+++.||+|+|||..+...+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia 72 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIA 72 (328)
T ss_pred CcEEEECCCCccHHHHHHHHH
Confidence 579999999999998876443
No 382
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=89.03 E-value=0.5 Score=52.71 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=32.3
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
.|.-++|+|++|+|||..+...+.+.+.+|.+++|++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4567899999999999998888888778888999987
No 383
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=88.91 E-value=0.6 Score=56.75 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHH----HcCCcEEEEccCCcchHHHHHHHHHHHH
Q 001047 156 YDFRIDKFQRSSIEAF----LRGSSVVVSAPTSSGKTLIAEAAAVATV 199 (1174)
Q Consensus 156 ~~~~~~~~Q~~ai~~l----l~g~~vlv~apTGsGKTlv~~~~il~~l 199 (1174)
|||+|+.+|.+.+..+ ..|+-.|...|||+|||+..+-..+.-+
T Consensus 12 fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 12 FPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 5677888999887664 4789889999999999987665555444
No 384
>PRK10436 hypothetical protein; Provisional
Probab=88.87 E-value=0.69 Score=55.75 Aligned_cols=43 Identities=26% Similarity=0.347 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHc--CCcEEEEccCCcchHHHHHHHHHHHHhcC
Q 001047 159 RIDKFQRSSIEAFLR--GSSVVVSAPTSSGKTLIAEAAAVATVANQ 202 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~--g~~vlv~apTGsGKTlv~~~~il~~l~~g 202 (1174)
.+.+.|.+.+..+.. +.-++|+||||||||+.. +.++..+...
T Consensus 201 G~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~~ 245 (462)
T PRK10436 201 GMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNTA 245 (462)
T ss_pred CcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCCC
Confidence 467778888877653 357899999999999876 3455555443
No 385
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=88.84 E-value=1.1 Score=56.99 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=25.5
Q ss_pred ceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEccccCCh
Q 001047 273 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANA 317 (1174)
Q Consensus 273 ~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~ 317 (1174)
+..+|||||+|++... ....++..+. +.++++.+||-.|+
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE-~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVE-NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhc-CceEEEEEecCCCh
Confidence 4578999999998632 2223333333 45688888886554
No 386
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=88.83 E-value=3 Score=43.28 Aligned_cols=131 Identities=14% Similarity=0.059 Sum_probs=71.6
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCC--CC-CCCc-EEEEcH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSA--IN-REAQ-ILIMTT 251 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~--~~-~~~~-IlV~Tp 251 (1174)
-+.|.--.|=|||++++=-+++++..|.+|+|+.=.|--..+=...+.+.+++ +.+...+.. .. .+.. . ..
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~~~~~--v~~~~~g~~~~~~~~~~~~~---~~ 97 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQLGQN--LDWVRCDLPRCLDTPHLDES---EK 97 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHHhCCC--cEEEECCCCCeeeCCCcCHH---HH
Confidence 56677788999999999999999999999999987775422222222333443 333332221 10 1100 0 00
Q ss_pred HHHHHHHhcccccccCCCCCCceeEEEEccccccccCCc--HHHHHHHHHHCCCCccEEEEccccC
Q 001047 252 EILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISR--GTVWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 252 e~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~--g~~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
....+.+.... ....-..+++||+||+=...+.++ ...+.+++...|.+.-+|+.--.+|
T Consensus 98 ~~~~~~~~~a~----~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p 159 (178)
T PRK07414 98 KALQELWQYTQ----AVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMP 159 (178)
T ss_pred HHHHHHHHHHH----HHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 11112221110 111124789999999987765433 2334445666666665555444433
No 387
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.82 E-value=1.6 Score=58.13 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=38.7
Q ss_pred CCChhHHHHHHHHhCCCCHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 001047 1097 CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 1141 (1174)
Q Consensus 1097 ~~~~~l~~~v~~Wa~G~~~~~i~~~t~l~eGd~vR~~rrl~dll~ 1141 (1174)
.+.+-=..|+.-=+.|.|=.||-+.-.+.++.+=-.++++-.=|.
T Consensus 838 ~lt~~e~~v~~~~~~g~~~~~ia~~l~~s~~tv~~h~~~~~~kl~ 882 (903)
T PRK04841 838 PLTQREWQVLGLIYSGYSNEQIAGELDVAATTIKTHIRNLYQKLG 882 (903)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 377777888888899999999999999999999888888776665
No 388
>PF05729 NACHT: NACHT domain
Probab=88.72 E-value=1.8 Score=44.02 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=27.0
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcC-----CeEEEEcccHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQ-----RRIFYTTPLKALSNQ 217 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g-----~rvlvl~PtraLa~Q 217 (1174)
+-++|.|+.|+|||......+......+ ..+++..+.+....+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS 48 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc
Confidence 3478999999999988765554444332 134555555555443
No 389
>PF12846 AAA_10: AAA-like domain
Probab=88.66 E-value=0.62 Score=52.82 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=35.4
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~ 216 (1174)
+.+++|.|+||||||......+.+.+..|..++++=|.-+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHHH
Confidence 3689999999999999888777788888989999877655544
No 390
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=88.59 E-value=1.8 Score=51.35 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=17.7
Q ss_pred CcEEEEccCCcchHHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il 196 (1174)
..+|+.||.|+|||..+...+-
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999988766543
No 391
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=88.54 E-value=1.9 Score=49.85 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHc--C---CcEEEEccCCcchHHHHHHHHH
Q 001047 161 DKFQRSSIEAFLR--G---SSVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 161 ~~~Q~~ai~~ll~--g---~~vlv~apTGsGKTlv~~~~il 196 (1174)
.|||...+..+.. + ..+++.||.|.||+..+...+-
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~ 43 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQ 43 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHH
Confidence 4666666666553 3 3678999999999988765543
No 392
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=88.46 E-value=0.7 Score=50.60 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=28.9
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhc------CCeEEEEcc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVAN------QRRIFYTTP 210 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~------g~rvlvl~P 210 (1174)
.|.-+.+.+|+|+|||..+...+...... +.+++|+.-
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 34678999999999999887776654443 367888874
No 393
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.23 E-value=0.67 Score=57.43 Aligned_cols=22 Identities=36% Similarity=0.330 Sum_probs=18.1
Q ss_pred cEEEEccCCcchHHHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVA 197 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~ 197 (1174)
.+|+++|.|+|||.++.+.+-.
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999998765533
No 394
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.22 E-value=0.46 Score=53.38 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=31.2
Q ss_pred HcCCcEEEEccCCcchHHHHHHHHHHHHhcC-CeEEEEcccHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEAAAVATVANQ-RRIFYTTPLKAL 214 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~~il~~l~~g-~rvlvl~PtraL 214 (1174)
..+.+++++|+||||||+.. ..++..+... .+++++-.+.++
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhccccccceEEeccccce
Confidence 35679999999999999877 4445666666 788888766554
No 395
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=88.21 E-value=0.61 Score=52.03 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=31.4
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhc-CCeEEEEcc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVAN-QRRIFYTTP 210 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~-g~rvlvl~P 210 (1174)
.|.-++|.|+||.|||..++..+.+.... +..|+|++.
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~Sl 56 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSL 56 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEES
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcC
Confidence 44678899999999999998888888776 589999875
No 396
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.08 E-value=1.1 Score=56.28 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=18.3
Q ss_pred CcEEEEccCCcchHHHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVA 197 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~ 197 (1174)
..+|+.||.|+|||.++...+-.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHH
Confidence 35799999999999988765443
No 397
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=88.07 E-value=1.4 Score=52.34 Aligned_cols=21 Identities=43% Similarity=0.688 Sum_probs=17.5
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
+.+++.||+|+|||+++-..+
T Consensus 166 ~gvLL~GppGtGKT~lAkaia 186 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVA 186 (389)
T ss_pred CceEEECCCCCChHHHHHHHH
Confidence 579999999999998875543
No 398
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=88.05 E-value=0.58 Score=50.25 Aligned_cols=39 Identities=28% Similarity=0.426 Sum_probs=32.8
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Pt 211 (1174)
.|.-+.|.+|+|+|||..++..+......+.+++|+.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 346789999999999999988887777778889988765
No 399
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.03 E-value=1.8 Score=50.40 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=27.4
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVAN--QRRIFYTTPLKAL 214 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~--g~rvlvl~PtraL 214 (1174)
.+..++|+||||||||+..- .++..+.. +.+++.+--..++
T Consensus 121 ~~g~ili~G~tGSGKTT~l~-al~~~i~~~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLA-SMIDYINKNAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHHH-HHHHhhCcCCCCEEEEEcCChhh
Confidence 45689999999999998764 34555542 3566666544443
No 400
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=88.02 E-value=0.59 Score=51.03 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=31.5
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
.|..+++.+++|+|||..+...+.+.+.++.+++|+.-
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 45789999999999999887777777777888888874
No 401
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=87.91 E-value=1.7 Score=52.44 Aligned_cols=65 Identities=22% Similarity=0.276 Sum_probs=45.7
Q ss_pred HHHHHHHHHH--cCCcEEEEccCCcchHHHHHHHHHHHHh------cCCeEEEEcccHHHHHHHHHHHHHHhCC
Q 001047 163 FQRSSIEAFL--RGSSVVVSAPTSSGKTLIAEAAAVATVA------NQRRIFYTTPLKALSNQKFREFRETFGD 228 (1174)
Q Consensus 163 ~Q~~ai~~ll--~g~~vlv~apTGsGKTlv~~~~il~~l~------~g~rvlvl~PtraLa~Q~~~~l~~~~g~ 228 (1174)
+|.+-=+.|. .++-++|+|..|||||.+++.-+...+. +++.|+++.|.+.+..-+.+.+-+ +|.
T Consensus 213 IQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPe-LGe 285 (747)
T COG3973 213 IQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPE-LGE 285 (747)
T ss_pred hhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchh-hcc
Confidence 3444333333 4467899999999999998876655543 344699999999888877766665 443
No 402
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.90 E-value=2.2 Score=53.40 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=16.9
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.+|++||.|+|||.++...+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999887654
No 403
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=87.78 E-value=1.2 Score=49.14 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=18.2
Q ss_pred CcEEEEccCCcchHHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il 196 (1174)
.++++.+|.|-|||+.+.+.+-
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~ 74 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIAN 74 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHH
Confidence 5799999999999988765443
No 404
>PHA00012 I assembly protein
Probab=87.77 E-value=3 Score=47.24 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=27.4
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
-+|.|-.|||||+.+..-|...+.+|.+++-=.|
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~Gr~VaTNid 37 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKGCIVATNLN 37 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcCCEEEeCCc
Confidence 5789999999999998888888888875544333
No 405
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.76 E-value=1.2 Score=54.19 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=16.3
Q ss_pred EEEEccCCcchHHHHHHHHH
Q 001047 177 VVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il 196 (1174)
++++||.|+|||.++.+.+.
T Consensus 41 yLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999988866543
No 406
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=87.73 E-value=0.66 Score=53.97 Aligned_cols=35 Identities=20% Similarity=0.405 Sum_probs=24.6
Q ss_pred HHHHHHH---HcCCcEEEEccCCcchHHHHHHHHHHHHh
Q 001047 165 RSSIEAF---LRGSSVVVSAPTSSGKTLIAEAAAVATVA 200 (1174)
Q Consensus 165 ~~ai~~l---l~g~~vlv~apTGsGKTlv~~~~il~~l~ 200 (1174)
.++|..+ -.|+..+|.||.|+|||+.+.. |...+.
T Consensus 157 ~rvID~l~PIGkGQR~lIvgppGvGKTTLaK~-Ian~I~ 194 (416)
T PRK09376 157 TRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQN-IANSIT 194 (416)
T ss_pred eeeeeeecccccCceEEEeCCCCCChhHHHHH-HHHHHH
Confidence 3444443 4789999999999999977654 444443
No 407
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=87.60 E-value=0.89 Score=56.63 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHc--CCcEEEEccCCcchHHHHHHHHHHHHhcC
Q 001047 159 RIDKFQRSSIEAFLR--GSSVVVSAPTSSGKTLIAEAAAVATVANQ 202 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~--g~~vlv~apTGsGKTlv~~~~il~~l~~g 202 (1174)
.+.+.|.+.+..+.. +..++++||||||||+.. +.++..+...
T Consensus 299 g~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~~~ 343 (564)
T TIGR02538 299 GFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILNTE 343 (564)
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhCCC
Confidence 467778888877654 346889999999999875 4556666543
No 408
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=87.59 E-value=3.5 Score=42.88 Aligned_cols=39 Identities=21% Similarity=0.157 Sum_probs=31.8
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraL 214 (1174)
-++|.-..|=|||++++=.+++++..|.+|+|+.=.|-=
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~ 68 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGG 68 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecC
Confidence 356666777789999998999999999999999766643
No 409
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.59 E-value=0.74 Score=57.36 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=17.2
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il 196 (1174)
-+|++||.|+|||.++.+.+-
T Consensus 40 a~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 358999999999998876543
No 410
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=87.36 E-value=1.3 Score=55.81 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=27.1
Q ss_pred cHHHHhhHHHHHhhcCCccCCCC-ccChhhHHHHhhcCCchHHHHHHHHhcc
Q 001047 980 GWKEFLRISNVIHETRALDINTQ-VIFPLGETAAAIRGENELWLAMVLRNKI 1030 (1174)
Q Consensus 980 ~~~~f~~~~~VL~~lgyl~~~~~-~vt~~Gr~a~~i~~~~eLllte~l~~g~ 1030 (1174)
.-.+|.....+|+.+..+-.... ++-.-- +-+-|.++..++.+.-
T Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~fi~~~~~------~~~~~~~~~~~~~~~~ 648 (725)
T PRK07133 603 YDVEFMEIAHFLKDLKILASSDNFILFSSK------RDEIDELIIKLNKNNY 648 (725)
T ss_pred ccHHHHHHHHHHhhhheeeecCceEEEecC------ccchHHHHHHHHHhhH
Confidence 45678888999999988854322 221111 1355666777766653
No 411
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=87.31 E-value=1.3 Score=54.98 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=16.9
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.+|++||.|+|||.++-..+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999998887654
No 412
>PRK07004 replicative DNA helicase; Provisional
Probab=87.20 E-value=1.4 Score=53.44 Aligned_cols=135 Identities=20% Similarity=0.167 Sum_probs=69.5
Q ss_pred HcCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEE-EEeCCCCC---------
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSNQKFREFRETFGDNNVG-LLTGDSAI--------- 240 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~-lltGd~~~--------- 240 (1174)
..|.-++|.|.||+|||..++-.+.... ..+..++|.+. -.=..|+..++-...+.+... +..|....
T Consensus 211 ~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSl-EM~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~a 289 (460)
T PRK07004 211 HGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSM-EMPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHA 289 (460)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeC-CCCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 3456788999999999988776665543 45777777743 122334444443322222111 11222110
Q ss_pred ---CCCCcEEE-----EcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccC----CcHHHHHHHHHHCC-----C
Q 001047 241 ---NREAQILI-----MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI----SRGTVWEEIIIYCP-----K 303 (1174)
Q Consensus 241 ---~~~~~IlV-----~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~----~~g~~~e~ii~~l~-----~ 303 (1174)
-.+.++.| .|+..++....+.. .....+++||||=.+.|... .+...+..+...+. -
T Consensus 290 ~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~------~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel 363 (460)
T PRK07004 290 VQKMSEAQLFIDETGGLNPMELRSRARRLA------RQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKEL 363 (460)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHH------HhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 01345555 35555544332210 01225789999999988632 23333444433321 2
Q ss_pred CccEEEEccc
Q 001047 304 EVQIICLSAT 313 (1174)
Q Consensus 304 ~~qiI~LSAT 313 (1174)
++.+|++|-.
T Consensus 364 ~ipVi~lsQL 373 (460)
T PRK07004 364 DVPVIALSQL 373 (460)
T ss_pred CCeEEEEecc
Confidence 5667777643
No 413
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.14 E-value=0.42 Score=53.13 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCcchHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~ 194 (1174)
...|+++.+|||||||+.+...
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTL 117 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTL 117 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHH
Confidence 3468999999999999987653
No 414
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=87.01 E-value=1 Score=51.62 Aligned_cols=51 Identities=25% Similarity=0.270 Sum_probs=40.3
Q ss_pred HHHHHHc------CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHH
Q 001047 167 SIEAFLR------GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217 (1174)
Q Consensus 167 ai~~ll~------g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q 217 (1174)
.++.++. |+-+.|.+|+|||||..++..+......+.+++|+..--++..+
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV 98 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH
Confidence 4555554 36788999999999999988888888889999999776666554
No 415
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.97 E-value=2.1 Score=53.51 Aligned_cols=21 Identities=29% Similarity=0.218 Sum_probs=17.4
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il 196 (1174)
.+|++||.|+|||+++.+.+-
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999998876543
No 416
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=86.85 E-value=8 Score=47.31 Aligned_cols=140 Identities=16% Similarity=0.260 Sum_probs=81.7
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHH----HHHhCCCeEEEEeCCC-C---CCC
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATV--ANQRRIFYTTPLKALSNQKFREF----RETFGDNNVGLLTGDS-A---INR 242 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l--~~g~rvlvl~PtraLa~Q~~~~l----~~~~g~~~v~lltGd~-~---~~~ 242 (1174)
+.+-.+..-|=--|||......|.-.+ -.|-++.|+++.|-.++-+++++ +++||...+....|+. . ...
T Consensus 201 KQkaTVFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~~s~pg~ 280 (668)
T PHA03372 201 KQKATVFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVISIDHRGA 280 (668)
T ss_pred hccceEEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEEEecCCC
Confidence 346677788999999975433332222 35889999999998777766655 4567754332111111 0 011
Q ss_pred CCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHH-CCCCccEEEEccccCChHHHH
Q 001047 243 EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY-CPKEVQIICLSATVANADELA 321 (1174)
Q Consensus 243 ~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~-l~~~~qiI~LSATl~n~~~~~ 321 (1174)
.+.++.+| . ++. +...=++++++++||||.+. ...+..++-. ..++.++|+.|-|-+ .++-.
T Consensus 281 Kst~~fas------c-~n~-----NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~Ns-g~~sT 343 (668)
T PHA03372 281 KSTALFAS------C-YNT-----NSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISSTNT-TNDAT 343 (668)
T ss_pred cceeeehh------h-ccC-----ccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCCCC-CCccc
Confidence 22233332 0 111 12223578999999999974 3444445443 346889999998842 34455
Q ss_pred HHHhcccC
Q 001047 322 GWIGQIHG 329 (1174)
Q Consensus 322 ~~l~~~~~ 329 (1174)
.|+..+++
T Consensus 344 SfL~~Lk~ 351 (668)
T PHA03372 344 CFLTKLNN 351 (668)
T ss_pred hHHHhccC
Confidence 67765443
No 417
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=86.83 E-value=0.88 Score=49.53 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=39.5
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
.|..+++.+++|+|||..+...+...+.++.+++|+.-.. -..|+.+.+..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~-~~~~l~~~~~~ 65 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE-REERILGYAKS 65 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHH
Confidence 3467899999999999988888888888888999986643 35566666554
No 418
>PRK08760 replicative DNA helicase; Provisional
Probab=86.83 E-value=1.3 Score=53.94 Aligned_cols=133 Identities=23% Similarity=0.215 Sum_probs=70.2
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEE-EEeCCCCC----------
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSNQKFREFRETFGDNNVG-LLTGDSAI---------- 240 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~-lltGd~~~---------- 240 (1174)
.|.-++|.|.||.|||..++..+.... ..+..|+|.+.- .=..|+..++....+.+... +..|....
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a~ 306 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSME-MSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAI 306 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEecc-CCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHHH
Confidence 456788999999999998877776654 347778777542 22345555555433322111 11121110
Q ss_pred --CCCCcEEE-----EcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccC----CcHHHHHHHHHHCC-----CC
Q 001047 241 --NREAQILI-----MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI----SRGTVWEEIIIYCP-----KE 304 (1174)
Q Consensus 241 --~~~~~IlV-----~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~----~~g~~~e~ii~~l~-----~~ 304 (1174)
-.+.++.| .|++.++..+.+.. .-.++++||||=.+.|... .+...+.++...+. -+
T Consensus 307 ~~l~~~~l~I~d~~~~t~~~I~~~~r~l~-------~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ 379 (476)
T PRK08760 307 KMLKETKIFIDDTPGVSPEVLRSKCRRLK-------REHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELN 379 (476)
T ss_pred HHHhcCCEEEeCCCCCCHHHHHHHHHHHH-------HhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhC
Confidence 01233433 25555555443211 1135889999998888522 23333444433221 25
Q ss_pred ccEEEEccc
Q 001047 305 VQIICLSAT 313 (1174)
Q Consensus 305 ~qiI~LSAT 313 (1174)
+.+|++|-.
T Consensus 380 ipVi~lsQL 388 (476)
T PRK08760 380 VPVIALSQL 388 (476)
T ss_pred CEEEEeecc
Confidence 666666643
No 419
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=86.81 E-value=0.82 Score=51.04 Aligned_cols=51 Identities=22% Similarity=0.403 Sum_probs=41.2
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
.|+.++|.+++|||||+.+...+...+..|.+++|++- .+...++.+.+..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~-~e~~~~l~~~~~~ 72 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVST-EESPEELLENARS 72 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEe-cCCHHHHHHHHHH
Confidence 45789999999999999999999998888889998864 4555556555555
No 420
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=86.78 E-value=0.78 Score=49.65 Aligned_cols=43 Identities=30% Similarity=0.479 Sum_probs=34.4
Q ss_pred HHHHHHc-----CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 167 SIEAFLR-----GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 167 ai~~ll~-----g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
.++.++. |.-++|.+++|+|||..+...+......+.+++|+.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4555554 456889999999999998888887777888999983
No 421
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=86.74 E-value=2.6 Score=48.41 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=18.1
Q ss_pred CcEEEEccCCcchHHHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVA 197 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~ 197 (1174)
...+++||.|+||+..+...+-.
T Consensus 27 ha~Lf~G~~G~Gk~~~A~~~a~~ 49 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAALCFIEG 49 (314)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999877655443
No 422
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=86.62 E-value=3.2 Score=47.90 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHH--cC---CcEEEEccCCcchHHHHHHHHH
Q 001047 161 DKFQRSSIEAFL--RG---SSVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 161 ~~~Q~~ai~~ll--~g---~~vlv~apTGsGKTlv~~~~il 196 (1174)
.|+|..++..+. .+ ..+++.||.|.|||..+...+-
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~ 43 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQ 43 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHH
Confidence 466777776665 23 2588999999999988766543
No 423
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=86.50 E-value=1.7 Score=45.82 Aligned_cols=54 Identities=28% Similarity=0.418 Sum_probs=36.9
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHh----------cCCeEEEEcccHHHHHHHHHHHHHHhC
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVA----------NQRRIFYTTPLKALSNQKFREFRETFG 227 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~----------~g~rvlvl~PtraLa~Q~~~~l~~~~g 227 (1174)
.|.-+++.||+|+|||......+...+. .+.+|+|+..--. ..++.+++...+.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 5677999999999999988777766654 4568999876544 4566677766554
No 424
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=86.43 E-value=1.5 Score=50.23 Aligned_cols=61 Identities=21% Similarity=0.365 Sum_probs=38.5
Q ss_pred HHHHHHcC-----CcEEEEccCCcchHHHHHHHHHHHHh------cCCeEEEEcccHHHHHHHHHHHHHHhC
Q 001047 167 SIEAFLRG-----SSVVVSAPTSSGKTLIAEAAAVATVA------NQRRIFYTTPLKALSNQKFREFRETFG 227 (1174)
Q Consensus 167 ai~~ll~g-----~~vlv~apTGsGKTlv~~~~il~~l~------~g~rvlvl~PtraLa~Q~~~~l~~~~g 227 (1174)
.++.++.| .-+.|++|+|+|||......++.... .+.+++|+.---.+..+...++.+.||
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g 155 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFG 155 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcC
Confidence 45666654 56789999999999887766654332 356899997554443333333444444
No 425
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=86.29 E-value=1 Score=54.84 Aligned_cols=50 Identities=28% Similarity=0.392 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHcC--CcEEEEccCCcchHHHHHHHHHHHHhc-CCeEEEE
Q 001047 158 FRIDKFQRSSIEAFLRG--SSVVVSAPTSSGKTLIAEAAAVATVAN-QRRIFYT 208 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g--~~vlv~apTGsGKTlv~~~~il~~l~~-g~rvlvl 208 (1174)
+.+.+.|.+.+..+... .-++|+||||||||+... .++..+.. +.+++.+
T Consensus 224 Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~-a~L~~l~~~~~~iiTi 276 (486)
T TIGR02533 224 LGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLY-AALSRLNTPERNILTV 276 (486)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH-HHHhccCCCCCcEEEE
Confidence 34678888888876654 347899999999998763 34555543 3344443
No 426
>PRK09165 replicative DNA helicase; Provisional
Probab=86.23 E-value=2.4 Score=51.98 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=57.0
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHh---------------cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEE-EEeC
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVA---------------NQRRIFYTTPLKALSNQKFREFRETFGDNNVG-LLTG 236 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~---------------~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~-lltG 236 (1174)
.|.-++|.|+||+|||..++..+..... +|..++|++. -.=..|+..++.....++... +..|
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s~v~~~~i~~~ 294 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQSEISSSKIRRG 294 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhcCCCHHHHhcC
Confidence 4467889999999999887766555433 2567777753 223345555554432222111 1122
Q ss_pred CCCC------------CCCCcEEE-----EcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 237 DSAI------------NREAQILI-----MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 237 d~~~------------~~~~~IlV-----~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
.... -...++.| .|++.++..+.+.. .-..+++||||=.|.|.
T Consensus 295 ~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~-------~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 295 KISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLK-------RQHGLDLLVVDYLQLIR 354 (497)
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHH-------HhcCCCEEEEcchHhcc
Confidence 1110 01223443 24555554443210 11358999999999876
No 427
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=86.20 E-value=1.9 Score=54.19 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=43.4
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHH--HHHHHHHHHHHHhCC
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA--LSNQKFREFRETFGD 228 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Ptra--La~Q~~~~l~~~~g~ 228 (1174)
..+++|.|+||+|||..+...+.+.+..|..++++=|--. |...++..++. +|.
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~~~~~~~~~-~G~ 231 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKRRMRAEAKR-AGR 231 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHHHHHHHHHH-hCC
Confidence 3689999999999999988888888888888888888753 77777766666 443
No 428
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=86.15 E-value=2.2 Score=51.53 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=29.8
Q ss_pred HcCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcc
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTP 210 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~P 210 (1174)
..|.-++|.|+||+|||..+...+.+... .|..++|++.
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~Sl 232 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSL 232 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 34567899999999999888777766554 5777888754
No 429
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=86.14 E-value=1.2 Score=51.04 Aligned_cols=51 Identities=25% Similarity=0.281 Sum_probs=41.7
Q ss_pred HHHHHHc------CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHH
Q 001047 167 SIEAFLR------GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217 (1174)
Q Consensus 167 ai~~ll~------g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q 217 (1174)
.++.++. |+-+.|.+|+|||||..++..+......+.+++|+.+--++-.+
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV 98 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH
Confidence 5566665 35788999999999999998888888889999999887766654
No 430
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.79 E-value=0.25 Score=55.88 Aligned_cols=20 Identities=40% Similarity=0.654 Sum_probs=17.0
Q ss_pred CCcEEEEccCCcchHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~ 193 (1174)
.+-||+.+|.|+|||+.+=.
T Consensus 185 PKGVLLYGPPGTGKTLLAkA 204 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLAKA 204 (406)
T ss_pred CCceEeeCCCCCcHHHHHHH
Confidence 47899999999999987643
No 431
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=85.73 E-value=3.1 Score=48.62 Aligned_cols=20 Identities=40% Similarity=0.504 Sum_probs=16.3
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++.||.|+|||..+...+
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la 57 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFA 57 (355)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999998775544
No 432
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=85.69 E-value=2.9 Score=49.09 Aligned_cols=87 Identities=25% Similarity=0.326 Sum_probs=49.4
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTE 252 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe 252 (1174)
.+..|++.++||+||++++...-...-......+|.+.=-++++.-. ..+.||.. -|.+||-.. ..+ +
T Consensus 100 ~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~--~~eLFG~~-kGaftGa~~--~k~-------G 167 (403)
T COG1221 100 SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQ--EAELFGHE-KGAFTGAQG--GKA-------G 167 (403)
T ss_pred CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHH--HHHHhccc-cceeecccC--CcC-------c
Confidence 56899999999999999886543221111122333333333333221 12278854 677888322 111 1
Q ss_pred HHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 253 ~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
.+. ..+=+.+.+||+|.|.
T Consensus 168 ----lfe-----------~A~GGtLfLDEI~~LP 186 (403)
T COG1221 168 ----LFE-----------QANGGTLFLDEIHRLP 186 (403)
T ss_pred ----hhe-----------ecCCCEEehhhhhhCC
Confidence 111 1245789999999986
No 433
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=85.67 E-value=1.2 Score=48.24 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=23.5
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhc-CCeEEEEcccH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVAN-QRRIFYTTPLK 212 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~-g~rvlvl~Ptr 212 (1174)
+..++|.||-|+|||...-.. +..+.. +..++|+.+..
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~-~~~~~~~~~~~~y~~~~~ 58 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEF-INELKEKGYKVVYIDFLE 58 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHH-HHHCT--EECCCHHCCTT
T ss_pred CcEEEEEcCCcCCHHHHHHHH-HHHhhhcCCcEEEEeccc
Confidence 368899999999999864433 333322 23455665533
No 434
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=85.63 E-value=4 Score=48.16 Aligned_cols=66 Identities=23% Similarity=0.116 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHHh
Q 001047 160 IDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATV--ANQRRIFYTTPLKALSNQKFREFRETF 226 (1174)
Q Consensus 160 ~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l--~~g~rvlvl~PtraLa~Q~~~~l~~~~ 226 (1174)
++..|.+|.=..-.|.- .|.+=.|||||.+...-+.+.- +..-+++|++=||.|+.++...+.+.|
T Consensus 163 fD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 163 FDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred ccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 55667766544444444 6788899999987554433222 245599999999999999877666643
No 435
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.55 E-value=1.2 Score=49.57 Aligned_cols=42 Identities=31% Similarity=0.455 Sum_probs=27.4
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCC-eEEEE---------cccHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQR-RIFYT---------TPLKALSNQ 217 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~-rvlvl---------~PtraLa~Q 217 (1174)
.-++|.+|||||||+.. .+++..+++.. +-|++ ...++|++|
T Consensus 126 GLILVTGpTGSGKSTTl-AamId~iN~~~~~HIlTIEDPIE~vh~skkslI~Q 177 (353)
T COG2805 126 GLILVTGPTGSGKSTTL-AAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQ 177 (353)
T ss_pred ceEEEeCCCCCcHHHHH-HHHHHHHhccCCcceEEecCchHhhhcchHhhhhH
Confidence 36889999999999764 35566666433 22222 345677777
No 436
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=85.48 E-value=5.2 Score=46.66 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=45.5
Q ss_pred EEEccCCcchHHHHHHHHHHH-HhcCC-eEEEEcccHHHHHHH----HHHHHHHhCC-CeEEEE-eCCCC--CCCCCcEE
Q 001047 178 VVSAPTSSGKTLIAEAAAVAT-VANQR-RIFYTTPLKALSNQK----FREFRETFGD-NNVGLL-TGDSA--INREAQIL 247 (1174)
Q Consensus 178 lv~apTGsGKTlv~~~~il~~-l~~g~-rvlvl~PtraLa~Q~----~~~l~~~~g~-~~v~ll-tGd~~--~~~~~~Il 247 (1174)
++.++.|+|||.+....++.. +.... +.++++|+..-+.+. ...+...... ..+..- ..+.. ...+..|.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~i~ 80 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKIILPNGSRIQ 80 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEEETTS-EEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEEecCceEEE
Confidence 578999999998876655544 44443 444444666544442 2233332322 112222 11111 12344566
Q ss_pred EEcHHHH--HHHHhcccccccCCCCCCceeEEEEccccccccCCc
Q 001047 248 IMTTEIL--RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISR 290 (1174)
Q Consensus 248 V~Tpe~L--~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~ 290 (1174)
+.+...- ..-+. + ..+++||+||+-.+.+...
T Consensus 81 ~~~~~~~~~~~~~~-------G----~~~~~i~iDE~~~~~~~~~ 114 (384)
T PF03237_consen 81 FRGADSPDSGDNIR-------G----FEYDLIIIDEAAKVPDDAF 114 (384)
T ss_dssp EES-----SHHHHH-------T----S--SEEEEESGGGSTTHHH
T ss_pred Eecccccccccccc-------c----cccceeeeeecccCchHHH
Confidence 6664321 11111 1 3688999999888765333
No 437
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=85.25 E-value=0.72 Score=50.50 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCcchHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIA 191 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~ 191 (1174)
..+-||+.++.|+|||+.+
T Consensus 218 pPKGVIlyG~PGTGKTLLA 236 (440)
T KOG0726|consen 218 PPKGVILYGEPGTGKTLLA 236 (440)
T ss_pred CCCeeEEeCCCCCchhHHH
Confidence 3478999999999999765
No 438
>PHA02542 41 41 helicase; Provisional
Probab=85.21 E-value=2.1 Score=51.88 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=29.6
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
|.-++|.|++|.|||..++..+......|..|+|++
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fS 225 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYIS 225 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 356788999999999998887777777788888875
No 439
>CHL00176 ftsH cell division protein; Validated
Probab=85.17 E-value=2.8 Score=52.76 Aligned_cols=21 Identities=43% Similarity=0.688 Sum_probs=17.5
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
+.+++.||+|+|||+.+-..+
T Consensus 217 ~gVLL~GPpGTGKT~LAralA 237 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIA 237 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 469999999999998876544
No 440
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.14 E-value=9.3 Score=47.00 Aligned_cols=75 Identities=13% Similarity=0.018 Sum_probs=59.0
Q ss_pred CCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHH
Q 001047 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 520 (1174)
Q Consensus 441 ~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~ 520 (1174)
+.++||.++++.-+..+++.|+.. +...+..+||++++.+|..+...
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~---------------------------------f~~~v~vlhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYR---------------------------------FGSQVAVLHSGLSDSEKLQAWRK 71 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHH---------------------------------hCCcEEEEECCCCHHHHHHHHHH
Confidence 468999999998888877766521 11258899999999999999999
Q ss_pred HhcCCceEEEechhhhhcCCcCCceEEEe
Q 001047 521 FQRGLVKVVFATETLAAGINMPARTAVLS 549 (1174)
Q Consensus 521 F~~G~ikVLVAT~tla~GIDiP~v~vVI~ 549 (1174)
..+|..+|+|+|..+.. ..+++..+||.
T Consensus 72 ~~~g~~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 72 VKNGEILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred HHcCCCCEEECChHHHc-CcccCCCEEEE
Confidence 99999999999976443 45677777765
No 441
>PRK09354 recA recombinase A; Provisional
Probab=85.06 E-value=1.4 Score=51.02 Aligned_cols=51 Identities=25% Similarity=0.268 Sum_probs=42.0
Q ss_pred HHHHHHc------CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHH
Q 001047 167 SIEAFLR------GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217 (1174)
Q Consensus 167 ai~~ll~------g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q 217 (1174)
.++.++. |+-+.|.+|+|||||..++..+......|.+++|+..--++-.+
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~ 103 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV 103 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHH
Confidence 5566665 35788999999999999999988888889999999887766653
No 442
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=85.01 E-value=2.9 Score=54.81 Aligned_cols=79 Identities=14% Similarity=0.251 Sum_probs=63.4
Q ss_pred HHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccc
Q 001047 195 AVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVG 263 (1174)
Q Consensus 195 il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~ 263 (1174)
+...+.++++++|++|+++-+..+++.+.+.+++.+++.++|+.+. +...+|+|+|. ++..
T Consensus 653 i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----iie~--- 724 (926)
T TIGR00580 653 IRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----IIET--- 724 (926)
T ss_pred HHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc---
Confidence 3444567889999999999999999999998888889999998753 35789999996 3333
Q ss_pred cccCCCCCCceeEEEEcccccc
Q 001047 264 MVSSESGLFDVDVIVLDEVHYL 285 (1174)
Q Consensus 264 ~~~~~~~l~~v~lVIiDEaH~l 285 (1174)
...+.++++||++.+++.
T Consensus 725 ----GIDIp~v~~VIi~~a~~~ 742 (926)
T TIGR00580 725 ----GIDIPNANTIIIERADKF 742 (926)
T ss_pred ----ccccccCCEEEEecCCCC
Confidence 446779999999988764
No 443
>PRK09087 hypothetical protein; Validated
Probab=84.98 E-value=2.5 Score=46.09 Aligned_cols=18 Identities=44% Similarity=0.660 Sum_probs=15.4
Q ss_pred CcEEEEccCCcchHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~ 192 (1174)
..+++.||+|+|||....
T Consensus 45 ~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358999999999997665
No 444
>PRK05636 replicative DNA helicase; Provisional
Probab=84.97 E-value=2.1 Score=52.37 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=26.0
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEc
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTT 209 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~ 209 (1174)
|.-++|.|.||+|||..++..+.... ..+..++|.+
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fS 301 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFS 301 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 35678899999999987776555443 4567777763
No 445
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=84.97 E-value=0.99 Score=55.10 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=39.1
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
.++++.||||||||..+.+|.+- ..+..+||+=|--+|.......+++
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll--~~~~s~iV~D~KgEl~~~t~~~r~~ 92 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL--NYPGSMIVTDPKGELYEKTAGYRKK 92 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH--hccCCEEEEECCCcHHHHHHHHHHH
Confidence 47999999999999999888653 3455889999999998877766655
No 446
>PRK13695 putative NTPase; Provisional
Probab=84.89 E-value=8.2 Score=40.06 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=20.1
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeE
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRI 205 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rv 205 (1174)
.+++.++.|+|||+.+...+-.....|.++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 478999999999998875433322234443
No 447
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=84.80 E-value=1.7 Score=49.67 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=16.1
Q ss_pred CcEEEEccCCcchHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~ 193 (1174)
.++++.||+|+|||..+..
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ 49 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHI 49 (305)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4699999999999977654
No 448
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=84.70 E-value=1.1 Score=48.73 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=35.3
Q ss_pred HHHHHHc-----CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q 001047 167 SIEAFLR-----GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211 (1174)
Q Consensus 167 ai~~ll~-----g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Pt 211 (1174)
.++.++. |.-+++.+++|+|||..+...+.+.+..+.+++|+.=-
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3455553 46789999999999999888888777788888888644
No 449
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=84.65 E-value=0.92 Score=55.50 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=38.9
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVAN-QRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~-g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
.|..++|.+|+|+|||+.+...+.+.+.+ |.+++|++-- +-..++.+.+.+
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e-E~~~~l~~~~~~ 71 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE-ESPQDIIKNARS 71 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCHHHHHHHHHH
Confidence 45789999999999999999888887776 7889888742 444555555544
No 450
>PRK10865 protein disaggregation chaperone; Provisional
Probab=84.60 E-value=3.8 Score=53.71 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=18.8
Q ss_pred CcEEEEccCCcchHHHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVA 197 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~ 197 (1174)
.++++.||+|+|||.++...+..
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999988655443
No 451
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=84.59 E-value=3.1 Score=54.33 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=22.0
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
.+++.||||+|||..+-... +.+..+...++...
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La-~~l~~~~~~~~~~d 631 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALA-ELLYGGEQNLITIN 631 (852)
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHhCCCcceEEEe
Confidence 47999999999998876443 33444444444443
No 452
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=84.58 E-value=2.8 Score=53.63 Aligned_cols=80 Identities=15% Similarity=0.047 Sum_probs=63.3
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
.+.+++|.++++.-|...+..+... .+.+...++.+||+++..+|..+..
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l------------------------------~~~~~i~v~ll~G~~~~~~r~~~~~ 358 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKL------------------------------LEPLGIRVALLTGSLKGKERREILE 358 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHH------------------------------HhhcCcEEEEEcCCCCHHHHHHHHH
Confidence 3568999999998888777766521 1122236899999999999999999
Q ss_pred HHhcCCceEEEechhh-hhcCCcCCceEEEe
Q 001047 520 LFQRGLVKVVFATETL-AAGINMPARTAVLS 549 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~tl-a~GIDiP~v~vVI~ 549 (1174)
.+.+|.+.|+|+|..+ ...+.++.+.+||.
T Consensus 359 ~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 359 AIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred HHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 9999999999999754 45678888888876
No 453
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=84.58 E-value=2.1 Score=47.80 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCcEEEEccCCcchHHHHHHHH
Q 001047 165 RSSIEAFLRGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 165 ~~ai~~ll~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++..+..|..+++.||+|+|||.++....
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la 42 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAMHVA 42 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHHHHH
Confidence 3444556678999999999999999886544
No 454
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=84.55 E-value=1.9 Score=55.03 Aligned_cols=87 Identities=15% Similarity=0.116 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcC----CeEEEEcccHHHHHHHHHHHHHHhCCCeEEEE
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ----RRIFYTTPLKALSNQKFREFRETFGDNNVGLL 234 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g----~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ll 234 (1174)
.+++-|.+|+... ...++|.|..|||||.+...-+...+..+ ..++.++=|+-.|.++..++.+.++.
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~~------ 73 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLGL------ 73 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhCc------
Confidence 5789999998875 56899999999999998888777777654 27888888888888999999987764
Q ss_pred eCCCCCCCCCcEEEEcHHHHHHHHh
Q 001047 235 TGDSAINREAQILIMTTEILRNMLY 259 (1174)
Q Consensus 235 tGd~~~~~~~~IlV~Tpe~L~~~L~ 259 (1174)
+ ....+.|+|...+...+.
T Consensus 74 -~-----~~~~~~v~TfHs~~~~~l 92 (655)
T COG0210 74 -P-----AAEGLTVGTFHSFALRIL 92 (655)
T ss_pred -c-----cccCcEEeeHHHHHHHHH
Confidence 0 011177888876655443
No 455
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=84.43 E-value=9.4 Score=43.28 Aligned_cols=118 Identities=21% Similarity=0.262 Sum_probs=65.2
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE--c--------ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT--T--------PLKALSNQKFREFRETFGDNNVGLLTGDSAINR 242 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl--~--------PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~ 242 (1174)
+++++++.+|-|||||..--..+...-..|-+.+++ = -.+.++.|...++... +...|
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~------~k~~g------ 115 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI------VKSFG------ 115 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh------heeec------
Confidence 347899999999999965444443321233344333 1 2345555555555442 11112
Q ss_pred CCcEEEEcHHH---HHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC---CCCccEEEEcccc
Q 001047 243 EAQILIMTTEI---LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC---PKEVQIICLSATV 314 (1174)
Q Consensus 243 ~~~IlV~Tpe~---L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l---~~~~qiI~LSATl 314 (1174)
.+++. |...|.. +...-..-=++|+||.|......+...+..++... ...+-++|+|--+
T Consensus 116 ------sfte~l~~lL~~L~~------~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 116 ------SFTENLSKLLEALKK------GDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred ------ccchhHHHHHHHHhc------CCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 23343 3444433 22222333467999999887777877777765433 2345566776665
No 456
>PRK10689 transcription-repair coupling factor; Provisional
Probab=84.37 E-value=3.2 Score=55.79 Aligned_cols=80 Identities=10% Similarity=0.194 Sum_probs=63.9
Q ss_pred HHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhccc
Q 001047 194 AAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSV 262 (1174)
Q Consensus 194 ~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~ 262 (1174)
.++..+.++++++|++|++.-+...++.+.+.+++..++.++|+.+. +...+|+|||. ++.+
T Consensus 801 ~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----Iier-- 873 (1147)
T PRK10689 801 AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIET-- 873 (1147)
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hhhc--
Confidence 34555667889999999999999999999998877889999998753 24789999996 3332
Q ss_pred ccccCCCCCCceeEEEEcccccc
Q 001047 263 GMVSSESGLFDVDVIVLDEVHYL 285 (1174)
Q Consensus 263 ~~~~~~~~l~~v~lVIiDEaH~l 285 (1174)
...+.++++||++.+++.
T Consensus 874 -----GIDIP~v~~VIi~~ad~f 891 (1147)
T PRK10689 874 -----GIDIPTANTIIIERADHF 891 (1147)
T ss_pred -----ccccccCCEEEEecCCCC
Confidence 446789999999988764
No 457
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=84.36 E-value=2.7 Score=52.32 Aligned_cols=61 Identities=18% Similarity=0.221 Sum_probs=46.7
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccH--HHHHHHHHHHHHHhCC-CeEEEEe
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK--ALSNQKFREFRETFGD-NNVGLLT 235 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Ptr--aLa~Q~~~~l~~~~g~-~~v~llt 235 (1174)
..+.+|.|+||+|||..+...+.+.+..|..++++=|-. .|...++...+. +|. ..+.+++
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~g~~vi~fDpkgD~el~~~~~~~~~~-~GR~~~f~~~~ 243 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRRGDVVIVFDPKGDADLLKRMYAEAKR-AGRLDEFYVFH 243 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHH-hCCCCceEEec
Confidence 368999999999999999998999998899999998877 566666666555 443 2344443
No 458
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=84.33 E-value=3.7 Score=47.26 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=25.1
Q ss_pred CHHHHHHHHHH----HcCC---cEEEEccCCcchHHHHHHHHHH
Q 001047 161 DKFQRSSIEAF----LRGS---SVVVSAPTSSGKTLIAEAAAVA 197 (1174)
Q Consensus 161 ~~~Q~~ai~~l----l~g~---~vlv~apTGsGKTlv~~~~il~ 197 (1174)
.|||+..+..+ .+|+ -.++.||.|.||+..+...+-.
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ 47 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQW 47 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHH
Confidence 45555555544 3543 5789999999999887665543
No 459
>PRK08840 replicative DNA helicase; Provisional
Probab=83.96 E-value=3.1 Score=50.41 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=35.0
Q ss_pred HHcCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHH
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
+..|.-++|.|.||.|||..++-.+.... ..+..++|.+.- -=..|+..++-.
T Consensus 214 ~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlE-Ms~~ql~~Rlla 267 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLE-MPAEQLMMRMLA 267 (464)
T ss_pred CCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEecc-CCHHHHHHHHHH
Confidence 34556788999999999988766555544 457778777543 224455555544
No 460
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=83.82 E-value=1.7 Score=48.70 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=43.9
Q ss_pred HHHHHHcC-----CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 001047 167 SIEAFLRG-----SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 167 ai~~ll~g-----~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
++..++.| .-+=|.+|-|||||.+++..+......+.+++|+---.+|--+-...+..
T Consensus 48 ~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~ 110 (279)
T COG0468 48 ALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGV 110 (279)
T ss_pred hHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 45555544 34458999999999999999999988999999997777666655555544
No 461
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=83.65 E-value=2.3 Score=46.31 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=33.9
Q ss_pred HHHcCC-cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHH
Q 001047 170 AFLRGS-SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217 (1174)
Q Consensus 170 ~ll~g~-~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q 217 (1174)
.+..|+ -+.++++-|||||+..- +++..+..+..++++.|-..++.+
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~d~~~~v~i~~~~~s~~ 93 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRR-ALLASLNEDQVAVVVIDKPTLSDA 93 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHH-HHHHhcCCCceEEEEecCcchhHH
Confidence 344555 77899999999999887 666776777777766665555544
No 462
>PRK06321 replicative DNA helicase; Provisional
Probab=83.54 E-value=3.7 Score=49.91 Aligned_cols=133 Identities=21% Similarity=0.208 Sum_probs=68.2
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEE-EEeCCCC-----------
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSNQKFREFRETFGDNNVG-LLTGDSA----------- 239 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~-lltGd~~----------- 239 (1174)
.|.-++|.|.+|.|||..++..+.... ..+..++|.+.- .=..|+..++......+... +..|+..
T Consensus 225 ~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~ 303 (472)
T PRK06321 225 PSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLE-MTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIVSVV 303 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHhhcCCCHHHhhcCCCCHHHHHHHHHHH
Confidence 345678899999999988776554433 456777777431 22334444443322222111 1122211
Q ss_pred -CCCCCcEEEE-----cHHHHHHHHhcccccccCCCCCCceeEEEEccccccccC-------CcHHHHHHHHHHCC----
Q 001047 240 -INREAQILIM-----TTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI-------SRGTVWEEIIIYCP---- 302 (1174)
Q Consensus 240 -~~~~~~IlV~-----Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~-------~~g~~~e~ii~~l~---- 302 (1174)
.-.+..+.|- |.+.++..+.+.. .-.++++||||=.+.|... .+...+..+...+.
T Consensus 304 ~~l~~~~~~idd~~~~ti~~i~~~~r~~~-------~~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~LK~lAk 376 (472)
T PRK06321 304 NEMQEHTLLIDDQPGLKITDLRARARRMK-------ESYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRMLKNLAR 376 (472)
T ss_pred HHHHcCCEEEeCCCCCCHHHHHHHHHHHH-------HhcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHHHHHHH
Confidence 0013345553 4555554443210 1135889999999988632 12233333333221
Q ss_pred -CCccEEEEccc
Q 001047 303 -KEVQIICLSAT 313 (1174)
Q Consensus 303 -~~~qiI~LSAT 313 (1174)
-++.+|++|-.
T Consensus 377 el~vpVi~lsQL 388 (472)
T PRK06321 377 ELNIPILCLSQL 388 (472)
T ss_pred HhCCcEEEEeec
Confidence 25667777665
No 463
>PRK05580 primosome assembly protein PriA; Validated
Probab=83.24 E-value=12 Score=47.90 Aligned_cols=75 Identities=13% Similarity=-0.011 Sum_probs=59.0
Q ss_pred CCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHH
Q 001047 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 520 (1174)
Q Consensus 441 ~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~ 520 (1174)
+.++||.++++.-+..+++.+... +...+..+||+++..+|..+...
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~---------------------------------fg~~v~~~~s~~s~~~r~~~~~~ 236 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRAR---------------------------------FGAPVAVLHSGLSDGERLDEWRK 236 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHH---------------------------------hCCCEEEEECCCCHHHHHHHHHH
Confidence 468999999999988887776521 11258899999999999999999
Q ss_pred HhcCCceEEEechhhhhcCCcCCceEEEe
Q 001047 521 FQRGLVKVVFATETLAAGINMPARTAVLS 549 (1174)
Q Consensus 521 F~~G~ikVLVAT~tla~GIDiP~v~vVI~ 549 (1174)
..+|..+|+|+|..... +.+.+..+||.
T Consensus 237 ~~~g~~~IVVgTrsal~-~p~~~l~liVv 264 (679)
T PRK05580 237 AKRGEAKVVIGARSALF-LPFKNLGLIIV 264 (679)
T ss_pred HHcCCCCEEEeccHHhc-ccccCCCEEEE
Confidence 99999999999975432 55667777665
No 464
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=83.19 E-value=3 Score=51.74 Aligned_cols=21 Identities=38% Similarity=0.389 Sum_probs=17.2
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il 196 (1174)
.+|++||.|+|||.++...+-
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999998866543
No 465
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=83.06 E-value=4.1 Score=46.75 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHH----cCC---cEEEEccCCcchHHHHHHHHHH
Q 001047 160 IDKFQRSSIEAFL----RGS---SVVVSAPTSSGKTLIAEAAAVA 197 (1174)
Q Consensus 160 ~~~~Q~~ai~~ll----~g~---~vlv~apTGsGKTlv~~~~il~ 197 (1174)
+.|+|...+..+. +++ -.+++||.|.||+..+...+-.
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~ 48 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRA 48 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHH
Confidence 4456666655543 453 6899999999999877655433
No 466
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=82.86 E-value=1.5 Score=46.79 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=23.8
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhc--CCeEEEEcccHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVAN--QRRIFYTTPLKA 213 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~--g~rvlvl~Ptra 213 (1174)
-++|++|||||||+.... ++..+.. +.+++.+--..+
T Consensus 3 lilI~GptGSGKTTll~~-ll~~~~~~~~~~i~t~e~~~E 41 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAA-MIDYINKNKTHHILTIEDPIE 41 (198)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhhhcCCcEEEEEcCCcc
Confidence 478999999999988643 4444432 345555544333
No 467
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=82.58 E-value=1.4 Score=57.06 Aligned_cols=21 Identities=24% Similarity=0.484 Sum_probs=17.2
Q ss_pred CCcEEEEccCCcchHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~ 194 (1174)
+..+++.+|+|+|||..+-..
T Consensus 347 ~~~lll~GppG~GKT~lAk~i 367 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSI 367 (775)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 356899999999999877544
No 468
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=82.28 E-value=1.1 Score=53.50 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=33.8
Q ss_pred HcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~ 216 (1174)
...++++|.|+||||||......+...+..+.+++|+=|.-++..
T Consensus 40 ~~~~h~~i~g~tGsGKt~~i~~l~~~~~~~~~~~vi~D~kg~~~~ 84 (410)
T cd01127 40 AEEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVS 84 (410)
T ss_pred hhhccEEEEcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcchhH
Confidence 345799999999999998754444455556789999999866543
No 469
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=81.52 E-value=4.3 Score=47.75 Aligned_cols=50 Identities=14% Similarity=0.257 Sum_probs=34.1
Q ss_pred eeEEEEccccccccCCcHHHHHHHHHH-----CCCCccEEEEccccCChHHHHHHH
Q 001047 274 VDVIVLDEVHYLSDISRGTVWEEIIIY-----CPKEVQIICLSATVANADELAGWI 324 (1174)
Q Consensus 274 v~lVIiDEaH~l~d~~~g~~~e~ii~~-----l~~~~qiI~LSATl~n~~~~~~~l 324 (1174)
.-+||||-..+-.+. .+.+|..+... -..-.++|++|..++....++..+
T Consensus 149 ~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaL 203 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKAL 203 (431)
T ss_pred CCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhC
Confidence 458999998876654 45555555321 134578999999988666666655
No 470
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=81.40 E-value=3.4 Score=50.40 Aligned_cols=21 Identities=43% Similarity=0.621 Sum_probs=17.3
Q ss_pred CCcEEEEccCCcchHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~ 194 (1174)
.+.+++.||+|+|||+++-..
T Consensus 216 p~GILLyGPPGTGKT~LAKAl 236 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAV 236 (512)
T ss_pred CcceEEECCCCCcHHHHHHHH
Confidence 367999999999999876543
No 471
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=81.39 E-value=1.1 Score=49.91 Aligned_cols=109 Identities=23% Similarity=0.330 Sum_probs=58.9
Q ss_pred HHHHHHHcC-----CcEEEEccCCcchHHHHHHHHHHHHh------cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEE
Q 001047 166 SSIEAFLRG-----SSVVVSAPTSSGKTLIAEAAAVATVA------NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLL 234 (1174)
Q Consensus 166 ~ai~~ll~g-----~~vlv~apTGsGKTlv~~~~il~~l~------~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ll 234 (1174)
..++.++.| .-+=+++|.|||||-..+..++.... .+.+++|+--......+-..++.+.++-.
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~----- 99 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLD----- 99 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS------
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccc-----
Confidence 366777765 33458999999999776665554432 25689999655555555444555544311
Q ss_pred eCCCCCCCCCc-EEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccc
Q 001047 235 TGDSAINREAQ-ILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285 (1174)
Q Consensus 235 tGd~~~~~~~~-IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l 285 (1174)
.+... .+.. +-+.+.+.+...+......+. -.++++||||-+=.+
T Consensus 100 -~~~~l-~~I~v~~~~~~~~l~~~L~~l~~~l~----~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 100 -PEEIL-DNIFVIRVFDLEELLELLEQLPKLLS----ESKIKLIVIDSIAAL 145 (256)
T ss_dssp -HHHHH-HTEEEEE-SSHHHHHHHHHHHHHHHH----HSCEEEEEEETSSHH
T ss_pred -cchhh-hceeeeecCCHHHHHHHHHHHHhhcc----ccceEEEEecchHHH
Confidence 00000 0111 113345555555543221111 137999999987654
No 472
>PRK08006 replicative DNA helicase; Provisional
Probab=81.34 E-value=5.4 Score=48.50 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=70.4
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEE-EEeCCCC-----------
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSNQKFREFRETFGDNNVG-LLTGDSA----------- 239 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~-lltGd~~----------- 239 (1174)
.|.-++|.|.+|.|||..++-.+.... ..|..|+|.+.- -=..|+..++-.....+... +..|..+
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlE-M~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~ 301 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLE-MPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTM 301 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHH
Confidence 456778899999999988877666654 457778777543 22344444544433322111 1112111
Q ss_pred --CCCCCcEEE-----EcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccC----CcHHHHHHHHHHC-----CC
Q 001047 240 --INREAQILI-----MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI----SRGTVWEEIIIYC-----PK 303 (1174)
Q Consensus 240 --~~~~~~IlV-----~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~----~~g~~~e~ii~~l-----~~ 303 (1174)
.....++.| .|+.-++....+.. . ....+++||||=.|.|... .+...+.++.+.+ .-
T Consensus 302 ~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~----~--~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel 375 (471)
T PRK08006 302 GILLEKRNMYIDDSSGLTPTEVRSRARRIF----R--EHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKEL 375 (471)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHH----H--hcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 002334444 24544444332210 0 0125899999999988522 2333444443332 12
Q ss_pred CccEEEEccc
Q 001047 304 EVQIICLSAT 313 (1174)
Q Consensus 304 ~~qiI~LSAT 313 (1174)
++.+|++|-.
T Consensus 376 ~ipVi~LsQL 385 (471)
T PRK08006 376 QVPVVALSQL 385 (471)
T ss_pred CCeEEEEEec
Confidence 5667777743
No 473
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=81.30 E-value=3.3 Score=48.68 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=17.8
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+.+++.||+|+|||+.+-..+
T Consensus 156 p~gvLL~GppGtGKT~lakaia 177 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVA 177 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3569999999999998876543
No 474
>PRK14873 primosome assembly protein PriA; Provisional
Probab=81.27 E-value=20 Score=45.42 Aligned_cols=123 Identities=17% Similarity=0.016 Sum_probs=80.4
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhc-cceeEecCCCCHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIE 518 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~-~gv~~~Hsgl~~~~R~~v~ 518 (1174)
.++++||.++....+..+...|... +. ..++.+||++++.+|....
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~---------------------------------f~~~~v~~lhS~l~~~~R~~~w 233 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRAL---------------------------------LGAGDVAVLSAGLGPADRYRRW 233 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHH---------------------------------cCCCcEEEECCCCCHHHHHHHH
Confidence 3568999999999888877776521 11 2589999999999999999
Q ss_pred HHHhcCCceEEEechhhhhcCCcCCceEEEeccc---ccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCH
Q 001047 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLS---KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGA 595 (1174)
Q Consensus 519 ~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~---k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~ 595 (1174)
....+|..+|+|.|-.+ .=.-+++..+||.... .|.....+..+..+..-+.++ ..|..+++.+.....
T Consensus 234 ~~~~~G~~~IViGtRSA-vFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~-------~~~~~lvLgSaTPSl 305 (665)
T PRK14873 234 LAVLRGQARVVVGTRSA-VFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH-------QHGCALLIGGHARTA 305 (665)
T ss_pred HHHhCCCCcEEEEccee-EEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH-------HcCCcEEEECCCCCH
Confidence 99999999999999763 2345566667665211 111111122344444433332 356677787777666
Q ss_pred HHHHHHhh
Q 001047 596 EECCKLLF 603 (1174)
Q Consensus 596 ~~~~~~~~ 603 (1174)
+.++....
T Consensus 306 es~~~~~~ 313 (665)
T PRK14873 306 EAQALVES 313 (665)
T ss_pred HHHHHHhc
Confidence 65555433
No 475
>PRK12608 transcription termination factor Rho; Provisional
Probab=81.03 E-value=2.4 Score=49.29 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=27.8
Q ss_pred HHHHHHHHHHH---cCCcEEEEccCCcchHHHHHHHHHHHHh
Q 001047 162 KFQRSSIEAFL---RGSSVVVSAPTSSGKTLIAEAAAVATVA 200 (1174)
Q Consensus 162 ~~Q~~ai~~ll---~g~~vlv~apTGsGKTlv~~~~il~~l~ 200 (1174)
++-.++|+.+. .|+..+|.||.|+|||++... +++.+.
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~-la~~i~ 158 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQ-IAAAVA 158 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 34455777765 778999999999999988655 333443
No 476
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=81.02 E-value=5.1 Score=52.41 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=18.5
Q ss_pred CcEEEEccCCcchHHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il 196 (1174)
.++++.||.|+|||.++...+.
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHH
Confidence 5899999999999988865543
No 477
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.92 E-value=6.1 Score=49.69 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=23.4
Q ss_pred CCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEE
Q 001047 269 SGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIIC 309 (1174)
Q Consensus 269 ~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~ 309 (1174)
......++|||||||.|.... ...+.+.+..-|....+|+
T Consensus 117 P~~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 117 PQIGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred cccCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEEE
Confidence 345688999999999997422 2223333443344443443
No 478
>PRK07773 replicative DNA helicase; Validated
Probab=80.87 E-value=3.5 Score=54.30 Aligned_cols=133 Identities=20% Similarity=0.149 Sum_probs=70.9
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEE-EeCCCCC----------
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKFREFRETFGDNNVGL-LTGDSAI---------- 240 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~l-ltGd~~~---------- 240 (1174)
.|.-++|.|++|+|||..++..+..... .+..++|++- -.=..|+..++.....++.... ..|....
T Consensus 216 ~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSl-Ems~~ql~~R~~s~~~~i~~~~i~~g~l~~~~~~~~~~a~ 294 (886)
T PRK07773 216 PGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSL-EMSKEQLVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARAM 294 (886)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEec-CCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 3456889999999999888777766554 3667777653 2223344444444222221110 1111110
Q ss_pred --CCCCcEEE-----EcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccC----CcHHHHHHHHHHCC-----CC
Q 001047 241 --NREAQILI-----MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI----SRGTVWEEIIIYCP-----KE 304 (1174)
Q Consensus 241 --~~~~~IlV-----~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~----~~g~~~e~ii~~l~-----~~ 304 (1174)
-.+.++.| .|...++..+.+.. . -.++++||||=.+.|... .+...+.++...+. -+
T Consensus 295 ~~l~~~~i~i~d~~~~~i~~i~~~~r~~~----~---~~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ 367 (886)
T PRK07773 295 GEISEAPIFIDDTPNLTVMEIRAKARRLR----Q---EANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLLAKELE 367 (886)
T ss_pred HHHhcCCEEEECCCCCCHHHHHHHHHHHH----H---hcCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 01234444 35555554333211 0 125899999999988632 23334444443332 26
Q ss_pred ccEEEEccc
Q 001047 305 VQIICLSAT 313 (1174)
Q Consensus 305 ~qiI~LSAT 313 (1174)
+.+|++|-.
T Consensus 368 vpvi~lsQL 376 (886)
T PRK07773 368 VPVVALSQL 376 (886)
T ss_pred CcEEEeccc
Confidence 778888755
No 479
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=80.86 E-value=4.4 Score=49.00 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=18.4
Q ss_pred cEEEEccCCcchHHHHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVAT 198 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~ 198 (1174)
.+|+.||.|+|||.++...+-..
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 57899999999999887655433
No 480
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=80.83 E-value=14 Score=35.67 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=24.1
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
+++++..|+|||.+....+......+.+++++
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~i 33 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAI 33 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 68999999999988776655554566666654
No 481
>CHL00095 clpC Clp protease ATP binding subunit
Probab=80.69 E-value=6.5 Score=51.49 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=19.9
Q ss_pred CcEEEEccCCcchHHHHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVAT 198 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~ 198 (1174)
+++++.||+|+|||.++...+...
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 599999999999999887655443
No 482
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=80.63 E-value=1.3 Score=59.85 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCC
Q 001047 513 WKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578 (1174)
Q Consensus 513 ~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G 578 (1174)
.+..++..|....+++|++|.++..|+|+|.++.|+. .+.+....+|+|..||+-+.+
T Consensus 342 ~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~--------~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 342 RQAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVL--------FDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhhee--------ccCcchHHHHHHhhcccccch
Confidence 4678999999999999999999999999999999999 778888999999999998764
No 483
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=80.51 E-value=2.2 Score=48.95 Aligned_cols=17 Identities=29% Similarity=0.636 Sum_probs=15.4
Q ss_pred CcEEEEccCCcchHHHH
Q 001047 175 SSVVVSAPTSSGKTLIA 191 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~ 191 (1174)
+|++..+|+|+|||+++
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 68999999999999765
No 484
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=80.20 E-value=3.1 Score=39.18 Aligned_cols=59 Identities=22% Similarity=0.219 Sum_probs=34.9
Q ss_pred HHHHhhcCCccCCCCccChhhHHHHhhcCCchHHHHHHHHhcccCCCCHHhHHHHHhhhcccc
Q 001047 988 SNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG 1050 (1174)
Q Consensus 988 ~~VL~~lgyl~~~~~~vt~~Gr~a~~i~~~~eLllte~l~~g~~~~L~p~~laA~~s~~v~e~ 1050 (1174)
.+.|+.||+||.++ .+|+.|+.++.+-- +.-++-+|..|...+. ..+++.++|++-.++
T Consensus 3 ~~~L~~Lgald~~~-~lT~lG~~~~~lPl--~p~~a~~Ll~~~~~~~-~~~~~~iaa~ls~~~ 61 (102)
T PF04408_consen 3 LELLKSLGALDENG-NLTPLGRKMSQLPL--DPRLAKMLLYGIQFGC-LDEALIIAAILSVRS 61 (102)
T ss_dssp HHHHHHTTSB-TTS--B-HHHHHHTTSSS---HHHHHHHHHHHHCT--HHHHHHHHHHHTSS-
T ss_pred HHHHHHCCCCCCCC-CcCHHHHHHHHCCC--chHhHhHhhhcccccc-HHHHHHHHHHHcCCC
Confidence 46799999999886 99999999999985 4455555554444433 334444444444333
No 485
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.02 E-value=3.3 Score=51.33 Aligned_cols=130 Identities=19% Similarity=0.205 Sum_probs=68.6
Q ss_pred HcCCcEEEEccCCcchHHHHHHHHHHHHh--cCCeEEE-EcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEE
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEAAAVATVA--NQRRIFY-TTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILI 248 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~~il~~l~--~g~rvlv-l~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV 248 (1174)
..|+.+.+++|.|+|||.++-+ ++.+. .++++++ =+|.+.+-.++++.--..-+. .-.++.|...-|=..-+--
T Consensus 492 ~pGe~vALVGPSGsGKSTiasL--L~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~Q-EPvLFs~sI~eNI~YG~~~ 568 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTIASL--LLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQ-EPVLFSGSIRENIAYGLDN 568 (716)
T ss_pred CCCCEEEEECCCCCCHHHHHHH--HHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeec-cceeecccHHHHHhcCCCC
Confidence 3678999999999999998765 44443 2334333 378777776665532221111 1122333221110000012
Q ss_pred EcHHHHHHHHhc--ccccc---------------------------cCCCCCCceeEEEEccccccccCCcHHHHHHHHH
Q 001047 249 MTTEILRNMLYQ--SVGMV---------------------------SSESGLFDVDVIVLDEVHYLSDISRGTVWEEIII 299 (1174)
Q Consensus 249 ~Tpe~L~~~L~~--~~~~~---------------------------~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~ 299 (1174)
+|.|.+.+.-.. .+.++ ..+..+++-.++|+|||---+|..-...+.+.+.
T Consensus 569 ~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~ 648 (716)
T KOG0058|consen 569 ATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALD 648 (716)
T ss_pred CCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHH
Confidence 222222211100 00000 0112355678899999998888888888888887
Q ss_pred HCCCC
Q 001047 300 YCPKE 304 (1174)
Q Consensus 300 ~l~~~ 304 (1174)
.+..+
T Consensus 649 ~~~~~ 653 (716)
T KOG0058|consen 649 RLMQG 653 (716)
T ss_pred HhhcC
Confidence 77665
No 486
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=80.00 E-value=1.2 Score=52.70 Aligned_cols=50 Identities=24% Similarity=0.174 Sum_probs=38.9
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCC
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGD 228 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~ 228 (1174)
+++|.||||||||..+.+|-+.. .+..+||+=|--++.......++. .|.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~--~~~s~vv~D~Kge~~~~t~~~r~~-~G~ 50 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT--WPGSVVVLDPKGENFELTSEHRRA-LGR 50 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc--CCCCEEEEccchhHHHHHHHHHHH-cCC
Confidence 47899999999999988876543 457899999999999776665554 453
No 487
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.00 E-value=5.7 Score=46.77 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.3
Q ss_pred cEEEEccCCcchHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~ 194 (1174)
.++++||.|+|||..+...
T Consensus 41 ~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999877654
No 488
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=79.96 E-value=5.2 Score=49.22 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=17.5
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
+.+++.+|+|+|||+.+-..+
T Consensus 89 ~giLL~GppGtGKT~la~alA 109 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVA 109 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 579999999999998875443
No 489
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=79.89 E-value=4.3 Score=42.06 Aligned_cols=128 Identities=15% Similarity=0.143 Sum_probs=60.4
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcH----
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTT---- 251 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tp---- 251 (1174)
-+.|.--.|=|||.+++=-+++++..|.+|+++.=.|---..=...+-+.+++. .+...+... +.-+.+
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~~--~~~~~g~~f-----~~~~~~~~~~ 77 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPNV--EIERFGKGF-----VWRMNEEEED 77 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT----EEEE--TT---------GGGHHHH
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCeE--EEEEcCCcc-----cccCCCcHHH
Confidence 356677789999999998899999999999999888761111112222345543 222221111 011111
Q ss_pred -HHHHHHHhcccccccCCCCCCceeEEEEccccccccCCc--HHHHHHHHHHCCCCccEEEEcccc
Q 001047 252 -EILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISR--GTVWEEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 252 -e~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~--g~~~e~ii~~l~~~~qiI~LSATl 314 (1174)
....+.+.... ....-..+++||+||+=...+.++ ...+..++...|...-+|+.--.+
T Consensus 78 ~~~~~~~~~~a~----~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~ 139 (172)
T PF02572_consen 78 RAAAREGLEEAK----EAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNA 139 (172)
T ss_dssp HHHHHHHHHHHH----HHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS-
T ss_pred HHHHHHHHHHHH----HHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCC
Confidence 22222222211 111234799999999987665433 223444555556666555544443
No 490
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=79.88 E-value=4.5 Score=48.14 Aligned_cols=106 Identities=16% Similarity=0.280 Sum_probs=0.0
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEIL 254 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~L 254 (1174)
+-+++.+|+|+|||+++ --|=..++...-=||=-| +-+.++.|. +-+-+
T Consensus 257 KGiLLyGPPGTGKTLiA-RqIGkMLNArePKIVNGP---------eIL~KYVGe---------------------SE~Nv 305 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIA-RQIGKMLNAREPKIVNGP---------EILNKYVGE---------------------SEENV 305 (744)
T ss_pred eeEEEECCCCCChhHHH-HHHHHHhcCCCCcccCcH---------HHHHHhhcc---------------------cHHHH
Q ss_pred HHHHhcccccccCCCCCCceeEEEEccccccc---------cCCcHHHHHHHHHHCC-----CCccEEEEc
Q 001047 255 RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS---------DISRGTVWEEIIIYCP-----KEVQIICLS 311 (1174)
Q Consensus 255 ~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~---------d~~~g~~~e~ii~~l~-----~~~qiI~LS 311 (1174)
++++.....-|+....-+.+..|||||.|.+. ..-.-.++..++.... .++-+|+||
T Consensus 306 R~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMT 376 (744)
T KOG0741|consen 306 RKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMT 376 (744)
T ss_pred HHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEecc
No 491
>PRK05595 replicative DNA helicase; Provisional
Probab=79.77 E-value=1.8 Score=52.28 Aligned_cols=51 Identities=18% Similarity=0.132 Sum_probs=34.0
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHH-HHhcCCeEEEEcccHHHHHHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVA-TVANQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~-~l~~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
.|.-++|.|.||.|||..++..+.. +..+|.+|+|++.- .=..|+..++-.
T Consensus 200 ~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlE-ms~~~l~~R~~a 251 (444)
T PRK05595 200 KGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLE-MSKEQLAYKLLC 251 (444)
T ss_pred CCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecC-CCHHHHHHHHHH
Confidence 4466788999999999888776655 34568888888653 223344444433
No 492
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=79.46 E-value=2.1 Score=36.25 Aligned_cols=20 Identities=30% Similarity=0.674 Sum_probs=16.8
Q ss_pred CCcEEEEccCCcchHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~ 193 (1174)
|...++.+|+|||||.++-.
T Consensus 23 g~~tli~G~nGsGKSTllDA 42 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDA 42 (62)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45799999999999987654
No 493
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=79.44 E-value=1.9 Score=51.06 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=30.0
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~ 216 (1174)
..++++|.|.||||||.+....+-+...+|.++||.=|.-+...
T Consensus 14 e~~~~li~G~~GsGKT~~i~~ll~~~~~~g~~~iI~D~kg~~~~ 57 (386)
T PF10412_consen 14 ENRHILIIGATGSGKTQAIRHLLDQIRARGDRAIIYDPKGEFTE 57 (386)
T ss_dssp GGG-EEEEE-TTSSHHHHHHHHHHHHHHTT-EEEEEEETTHHHH
T ss_pred hhCcEEEECCCCCCHHHHHHHHHHHHHHcCCEEEEEECCchHHH
Confidence 45799999999999998654444444567788888888765544
No 494
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyses the in vivo and in vitro genome-encapsidation reaction [].; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=79.39 E-value=20 Score=40.44 Aligned_cols=129 Identities=19% Similarity=0.208 Sum_probs=74.8
Q ss_pred EEEEccCCcchHHHHHH-HHHHHHhcCCeEEEEcccH----HHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcH
Q 001047 177 VVVSAPTSSGKTLIAEA-AAVATVANQRRIFYTTPLK----ALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTT 251 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~-~il~~l~~g~rvlvl~Ptr----aLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tp 251 (1174)
-+|.|.-|-|||.+.-- +|-..+..|.+.||+--.+ .+++..+.++.+.|++....+..-..-++ +-.|-..+|
T Consensus 20 ~~viG~RgiGKtya~k~~~i~df~~~G~qfiyLRr~k~E~~~~~n~~f~dv~~~f~~~~F~vk~~k~~id-gk~~g~~~~ 98 (333)
T PF05894_consen 20 NFVIGARGIGKTYALKKKLIKDFIEYGEQFIYLRRYKTELDKMKNKFFNDVQQEFPNNEFEVKGNKIYID-GKLIGYFIP 98 (333)
T ss_pred EEEEecccccchhHHHHHHHHHHHhcCCEEEEEEecchHHHHHhhHHHHHHHHhCCCCcEEEEccEEEEC-CeEEEEEEe
Confidence 35669999999988654 4556677899999985433 66777777887777765444222111222 223333333
Q ss_pred HHHHHHHhcccccccCCCCCCceeEEEEccccccccC-C----cHHHHHHH---HHHCCCCccEEEEcccc
Q 001047 252 EILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI-S----RGTVWEEI---IIYCPKEVQIICLSATV 314 (1174)
Q Consensus 252 e~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~-~----~g~~~e~i---i~~l~~~~qiI~LSATl 314 (1174)
=.-...+ ......+|..||+||+-.=.+. . --..++.+ +.+...+++++++|--.
T Consensus 99 Ls~~q~~--------Ks~~Yp~V~~IvfDEfi~ek~~~~y~~nEv~~Lln~i~TV~R~rd~i~vicl~Nav 161 (333)
T PF05894_consen 99 LSGWQKL--------KSSSYPNVYTIVFDEFIIEKSNWRYIPNEVKALLNFIDTVFRFRDRIRVICLSNAV 161 (333)
T ss_pred cchhhhc--------ccCCCCcEEEEEEEEEEecCcccCCCchHHHHHHHHHHHHhhcccceEEEEEeccc
Confidence 2222222 2445779999999998631111 0 01122222 23456788999998644
No 495
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=79.11 E-value=3.3 Score=48.44 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=20.2
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATV 199 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l 199 (1174)
.+..++|++|||||||+.. ..++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 5678999999999999876 4455555
No 496
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=79.04 E-value=3.8 Score=50.51 Aligned_cols=110 Identities=18% Similarity=0.241 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHH--------cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCe
Q 001047 159 RIDKFQRSSIEAFL--------RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNN 230 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll--------~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~ 230 (1174)
.+..+-.++++.+. +|+-++.++|+|-|||-++- .|..++. +.|--+.
T Consensus 415 gm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~k-SIA~ALn-----------------------RkFfRfS 470 (906)
T KOG2004|consen 415 GMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAK-SIARALN-----------------------RKFFRFS 470 (906)
T ss_pred chHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHH-HHHHHhC-----------------------CceEEEe
Confidence 45566777777653 45778889999999997653 2333322 2121233
Q ss_pred EEEEeCCCCCCCCCcEEE-EcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC
Q 001047 231 VGLLTGDSAINREAQILI-MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC 301 (1174)
Q Consensus 231 v~lltGd~~~~~~~~IlV-~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l 301 (1174)
+|-++....+....+-.| +-||++.+.|.+.. .+--+|.|||+|.++....|.--..++..+
T Consensus 471 vGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~---------t~NPliLiDEvDKlG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 471 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVK---------TENPLILIDEVDKLGSGHQGDPASALLELL 533 (906)
T ss_pred ccccccHHhhcccceeeeccCChHHHHHHHhhC---------CCCceEEeehhhhhCCCCCCChHHHHHHhc
Confidence 444444444444334333 57999999887521 123479999999998545554443444333
No 497
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=78.79 E-value=2.9 Score=43.38 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=33.7
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
++|.+++|||||..++..+.. .+.+++|+.-.+++-..+.+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHH
Confidence 589999999999888776544 567899998877775555555443
No 498
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=78.63 E-value=4.3 Score=40.79 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=23.3
Q ss_pred CCCceeEEEEccccccccCCcHHHHHHHHHHC
Q 001047 270 GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC 301 (1174)
Q Consensus 270 ~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l 301 (1174)
...+-+++|+||--.-.|......+.+++..+
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 34577899999998877766566666666665
No 499
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=78.57 E-value=4.6 Score=52.25 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=17.5
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.++.+++.||+|+|||+.+-.
T Consensus 211 ~~~giLL~GppGtGKT~lara 231 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKA 231 (733)
T ss_pred CCceEEEECCCCCChHHHHHH
Confidence 447899999999999987654
No 500
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=78.55 E-value=15 Score=41.18 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=19.7
Q ss_pred HHHHHHc-C--CcEEEEccCCcchHHHHHH
Q 001047 167 SIEAFLR-G--SSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 167 ai~~ll~-g--~~vlv~apTGsGKTlv~~~ 193 (1174)
.++.+.. + +++++.+|||+|||+.+-.
T Consensus 101 ~l~~l~~~~~~~~~~i~g~~g~GKttl~~~ 130 (270)
T TIGR02858 101 LLPYLVRNNRVLNTLIISPPQCGKTTLLRD 130 (270)
T ss_pred HHHHHHhCCCeeEEEEEcCCCCCHHHHHHH
Confidence 3445443 3 5889999999999986543
Done!