Query 001047
Match_columns 1174
No_of_seqs 683 out of 4005
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 08:17:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l9o_A ATP-dependent RNA helic 100.0 7E-119 2E-123 1170.8 60.0 902 148-1171 173-1103(1108)
2 2xgj_A ATP-dependent RNA helic 100.0 2E-115 7E-120 1129.1 78.5 895 153-1171 80-1005(1010)
3 4a4z_A Antiviral helicase SKI2 100.0 5E-112 2E-116 1097.8 72.5 917 152-1171 32-992 (997)
4 4f92_B U5 small nuclear ribonu 100.0 9.4E-51 3.2E-55 546.6 31.8 419 147-661 911-1360(1724)
5 4f92_B U5 small nuclear ribonu 100.0 3.1E-50 1.1E-54 541.6 31.7 403 159-641 79-518 (1724)
6 2zj8_A DNA helicase, putative 100.0 4.1E-48 1.4E-52 492.0 42.5 435 139-665 3-447 (720)
7 2va8_A SSO2462, SKI2-type heli 100.0 3.7E-48 1.3E-52 492.6 40.5 443 139-663 10-467 (715)
8 2p6r_A Afuhel308 helicase; pro 100.0 4.1E-48 1.4E-52 490.6 37.0 419 150-663 16-446 (702)
9 2db3_A ATP-dependent RNA helic 100.0 4.3E-44 1.5E-48 428.2 36.6 331 138-594 57-409 (434)
10 2i4i_A ATP-dependent RNA helic 100.0 8.5E-42 2.9E-46 406.2 34.4 329 138-593 16-384 (417)
11 3pey_A ATP-dependent RNA helic 100.0 1.5E-41 5.1E-46 400.4 35.1 331 137-593 5-357 (395)
12 3fht_A ATP-dependent RNA helic 100.0 2.4E-41 8.2E-46 401.4 34.8 331 138-593 26-380 (412)
13 2j0s_A ATP-dependent RNA helic 100.0 2.1E-41 7.3E-46 402.1 32.8 333 139-593 39-384 (410)
14 1s2m_A Putative ATP-dependent 100.0 4.1E-41 1.4E-45 398.2 34.4 331 137-593 21-366 (400)
15 1hv8_A Putative ATP-dependent 100.0 9.9E-41 3.4E-45 389.3 36.8 329 138-593 7-346 (367)
16 3eiq_A Eukaryotic initiation f 100.0 6.4E-42 2.2E-46 406.7 26.0 333 139-593 42-388 (414)
17 3fmp_B ATP-dependent RNA helic 100.0 6.3E-43 2.2E-47 424.0 17.4 334 138-593 93-447 (479)
18 3i5x_A ATP-dependent RNA helic 100.0 4.2E-41 1.4E-45 416.4 34.0 339 144-593 79-450 (563)
19 1xti_A Probable ATP-dependent 100.0 1.1E-40 3.9E-45 392.8 35.1 332 137-594 8-359 (391)
20 2v1x_A ATP-dependent DNA helic 100.0 9.4E-41 3.2E-45 411.1 30.4 321 142-592 26-374 (591)
21 3sqw_A ATP-dependent RNA helic 100.0 8.4E-41 2.9E-45 414.5 27.3 339 144-593 28-399 (579)
22 2z0m_A 337AA long hypothetical 100.0 1.4E-39 4.7E-44 375.2 35.2 305 150-590 7-321 (337)
23 1oyw_A RECQ helicase, ATP-depe 100.0 7.9E-40 2.7E-44 398.9 28.5 318 142-592 7-343 (523)
24 1fuu_A Yeast initiation factor 100.0 4.9E-41 1.7E-45 396.3 15.9 331 139-593 23-367 (394)
25 3oiy_A Reverse gyrase helicase 100.0 6.7E-40 2.3E-44 389.9 25.8 303 150-590 12-363 (414)
26 3fho_A ATP-dependent RNA helic 100.0 2.8E-40 9.7E-45 402.7 17.9 327 144-593 126-471 (508)
27 4a2p_A RIG-I, retinoic acid in 100.0 9.3E-38 3.2E-42 385.6 27.1 386 156-592 4-508 (556)
28 3tbk_A RIG-I helicase domain; 100.0 9.4E-37 3.2E-41 376.2 26.6 394 157-592 2-507 (555)
29 1wp9_A ATP-dependent RNA helic 100.0 1.1E-35 3.8E-40 359.3 33.7 383 158-593 8-476 (494)
30 4gl2_A Interferon-induced heli 100.0 1.5E-36 5E-41 385.6 23.2 382 157-578 5-509 (699)
31 4a2q_A RIG-I, retinoic acid in 100.0 1.6E-35 5.4E-40 380.1 29.8 395 157-592 246-749 (797)
32 4ddu_A Reverse gyrase; topoiso 100.0 5.3E-36 1.8E-40 390.9 25.7 272 150-551 69-385 (1104)
33 2ykg_A Probable ATP-dependent 100.0 1.1E-35 3.8E-40 377.4 27.2 397 152-592 6-516 (696)
34 1gm5_A RECG; helicase, replica 100.0 1.1E-35 3.9E-40 373.1 21.3 311 148-591 357-696 (780)
35 2eyq_A TRCF, transcription-rep 100.0 1.7E-34 5.8E-39 379.2 31.2 310 147-592 591-922 (1151)
36 2xau_A PRE-mRNA-splicing facto 100.0 1.7E-34 5.9E-39 365.0 28.0 346 136-591 71-442 (773)
37 3rc3_A ATP-dependent RNA helic 100.0 6.2E-34 2.1E-38 352.2 30.8 303 169-616 150-468 (677)
38 2oca_A DAR protein, ATP-depend 100.0 8E-35 2.7E-39 355.7 22.4 321 157-580 111-445 (510)
39 4a2w_A RIG-I, retinoic acid in 100.0 1.6E-34 5.5E-39 374.5 26.0 395 157-592 246-749 (936)
40 1gku_B Reverse gyrase, TOP-RG; 100.0 8.2E-35 2.8E-39 380.2 21.9 268 152-550 50-349 (1054)
41 2fwr_A DNA repair protein RAD2 100.0 5.9E-34 2E-38 344.6 26.1 356 156-591 90-453 (472)
42 2jlq_A Serine protease subunit 100.0 1.9E-34 6.5E-39 345.7 20.0 290 159-591 4-310 (451)
43 1tf5_A Preprotein translocase 100.0 7.5E-33 2.6E-37 340.0 27.2 362 155-593 79-546 (844)
44 3o8b_A HCV NS3 protease/helica 100.0 8.3E-34 2.9E-38 346.6 18.5 291 152-593 210-515 (666)
45 2whx_A Serine protease/ntpase/ 100.0 1E-33 3.6E-38 349.4 19.6 290 159-590 171-476 (618)
46 2v6i_A RNA helicase; membrane, 100.0 9E-32 3.1E-36 320.4 25.2 277 173-591 1-290 (431)
47 2fsf_A Preprotein translocase 100.0 1.4E-31 4.8E-36 327.6 27.1 365 153-593 68-584 (853)
48 2z83_A Helicase/nucleoside tri 100.0 1.8E-32 6E-37 329.2 18.1 284 167-592 14-313 (459)
49 2wv9_A Flavivirin protease NS2 100.0 1.6E-32 5.4E-37 340.8 17.1 289 159-590 215-531 (673)
50 1yks_A Genome polyprotein [con 100.0 6.8E-32 2.3E-36 322.1 21.3 278 170-590 4-297 (440)
51 1nkt_A Preprotein translocase 100.0 1.2E-30 4.1E-35 319.3 30.5 365 152-593 104-618 (922)
52 3h1t_A Type I site-specific re 100.0 1.3E-30 4.4E-35 324.1 22.3 341 157-579 176-545 (590)
53 3dmq_A RNA polymerase-associat 100.0 3.5E-28 1.2E-32 315.6 33.7 396 157-603 151-626 (968)
54 1z63_A Helicase of the SNF2/RA 100.0 3.4E-27 1.2E-31 287.4 30.2 371 157-592 35-453 (500)
55 1q0u_A Bstdead; DEAD protein, 99.9 5.8E-26 2E-30 245.4 18.3 181 138-326 5-201 (219)
56 3iuy_A Probable ATP-dependent 99.9 1.6E-25 5.5E-30 243.4 20.9 169 142-316 25-210 (228)
57 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 4.6E-25 1.6E-29 283.8 27.8 354 158-604 270-721 (1038)
58 3fmo_B ATP-dependent RNA helic 99.9 1.6E-25 5.5E-30 253.5 20.2 183 137-324 92-288 (300)
59 1vec_A ATP-dependent RNA helic 99.9 3.7E-25 1.3E-29 236.4 21.2 173 138-316 4-189 (206)
60 1z3i_X Similar to RAD54-like; 99.9 5.4E-24 1.9E-28 265.7 33.8 370 158-592 54-528 (644)
61 3fe2_A Probable ATP-dependent 99.9 2.1E-25 7E-30 244.9 18.3 178 139-322 31-226 (242)
62 2oxc_A Probable ATP-dependent 99.9 4.8E-25 1.6E-29 240.1 20.4 182 137-326 24-218 (230)
63 2gxq_A Heat resistant RNA depe 99.9 3.6E-25 1.2E-29 236.6 19.0 180 139-324 3-196 (207)
64 2pl3_A Probable ATP-dependent 99.9 6.7E-25 2.3E-29 239.8 21.0 180 138-322 26-221 (236)
65 3mwy_W Chromo domain-containin 99.9 2.3E-24 7.8E-29 275.8 28.6 378 157-592 234-684 (800)
66 1qde_A EIF4A, translation init 99.9 1E-24 3.5E-29 236.3 20.3 173 138-316 15-198 (224)
67 3bor_A Human initiation factor 99.9 7.1E-25 2.4E-29 239.8 19.1 173 138-316 31-216 (237)
68 3ly5_A ATP-dependent RNA helic 99.9 2.9E-25 1E-29 246.6 16.1 174 144-322 61-251 (262)
69 3ber_A Probable ATP-dependent 99.9 1.5E-24 5.1E-29 239.0 19.9 183 136-323 42-237 (249)
70 1wrb_A DJVLGB; RNA helicase, D 99.9 3.4E-24 1.1E-28 236.9 20.8 179 138-322 24-228 (253)
71 3jux_A Protein translocase sub 99.9 6.1E-23 2.1E-27 246.0 32.2 108 440-593 473-588 (822)
72 3dkp_A Probable ATP-dependent 99.9 3.6E-24 1.2E-28 235.4 19.5 181 141-327 33-231 (245)
73 1t6n_A Probable ATP-dependent 99.9 2.8E-24 9.7E-29 232.2 17.0 179 138-322 15-209 (220)
74 1c4o_A DNA nucleotide excision 99.9 2.2E-22 7.4E-27 251.0 29.2 114 440-593 438-551 (664)
75 2d7d_A Uvrabc system protein B 99.9 8.5E-21 2.9E-25 236.5 28.6 114 440-593 444-557 (661)
76 3b6e_A Interferon-induced heli 99.8 1.4E-20 4.7E-25 202.1 16.6 158 156-313 30-216 (216)
77 2ipc_A Preprotein translocase 99.8 3.9E-19 1.3E-23 216.9 30.1 134 151-286 71-215 (997)
78 1rif_A DAR protein, DNA helica 99.8 3.3E-20 1.1E-24 208.3 14.4 149 156-317 110-265 (282)
79 3llm_A ATP-dependent RNA helic 99.8 6.5E-20 2.2E-24 200.1 16.4 165 151-326 53-229 (235)
80 2vl7_A XPD; helicase, unknown 99.8 1.7E-18 5.9E-23 211.6 20.5 126 156-286 4-188 (540)
81 2hjv_A ATP-dependent RNA helic 99.8 1.3E-18 4.3E-23 178.6 15.3 111 439-593 33-143 (163)
82 2p6n_A ATP-dependent RNA helic 99.8 2E-18 6.9E-23 181.7 17.0 122 430-595 43-164 (191)
83 1t5i_A C_terminal domain of A 99.8 7.7E-19 2.6E-23 181.9 13.4 113 437-593 27-139 (172)
84 3eaq_A Heat resistant RNA depe 99.8 1.1E-18 3.7E-23 187.1 14.6 111 439-593 29-139 (212)
85 2rb4_A ATP-dependent RNA helic 99.8 1.3E-18 4.3E-23 180.9 14.1 120 430-593 22-148 (175)
86 1fuk_A Eukaryotic initiation f 99.8 1.5E-18 5.3E-23 178.4 14.0 112 438-593 27-138 (165)
87 2fz4_A DNA repair protein RAD2 99.8 3.2E-18 1.1E-22 186.7 16.1 143 156-318 90-232 (237)
88 2jgn_A DBX, DDX3, ATP-dependen 99.7 5E-18 1.7E-22 177.8 12.6 110 440-593 45-154 (185)
89 3i32_A Heat resistant RNA depe 99.7 7.6E-18 2.6E-22 189.3 13.5 111 439-593 26-136 (300)
90 3crv_A XPD/RAD3 related DNA he 99.7 4.9E-16 1.7E-20 190.6 25.6 123 157-287 1-187 (551)
91 2yjt_D ATP-dependent RNA helic 99.5 2.1E-18 7.1E-23 178.3 0.0 110 440-593 29-138 (170)
92 4a15_A XPD helicase, ATP-depen 99.6 7.5E-14 2.6E-18 172.6 22.7 68 158-225 2-74 (620)
93 1z5z_A Helicase of the SNF2/RA 99.4 1.3E-12 4.3E-17 145.0 11.5 121 429-592 101-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.5 1.9E-07 6.4E-12 115.3 9.7 141 161-313 151-298 (608)
95 3e1s_A Exodeoxyribonuclease V, 98.2 6.6E-06 2.3E-10 100.5 12.4 127 157-311 187-313 (574)
96 4b3f_X DNA-binding protein smu 97.8 3.1E-05 1E-09 96.5 10.1 67 158-224 188-255 (646)
97 3upu_A ATP-dependent DNA helic 97.8 8.1E-05 2.8E-09 88.8 13.3 128 159-311 25-162 (459)
98 2gk6_A Regulator of nonsense t 97.7 0.00012 4.3E-09 90.5 13.4 66 159-224 180-246 (624)
99 2xzl_A ATP-dependent helicase 97.7 0.00016 5.5E-09 91.6 13.1 67 159-225 360-427 (802)
100 2wjy_A Regulator of nonsense t 97.6 0.00029 1E-08 89.1 13.0 67 158-224 355-422 (800)
101 3lfu_A DNA helicase II; SF1 he 97.2 0.0025 8.4E-08 79.4 15.5 68 159-228 9-80 (647)
102 2o0j_A Terminase, DNA packagin 97.2 0.0025 8.6E-08 73.3 14.1 126 156-298 160-296 (385)
103 3cpe_A Terminase, DNA packagin 96.9 0.013 4.5E-07 71.9 17.8 143 155-315 159-314 (592)
104 2orw_A Thymidine kinase; TMTK, 96.8 0.0019 6.4E-08 66.7 7.8 40 173-212 2-41 (184)
105 2b8t_A Thymidine kinase; deoxy 96.7 0.0026 8.8E-08 67.6 8.1 92 173-286 11-102 (223)
106 3ec2_A DNA replication protein 96.7 0.0082 2.8E-07 61.3 11.7 58 161-219 16-83 (180)
107 1xx6_A Thymidine kinase; NESG, 96.7 0.0028 9.5E-08 65.7 7.5 39 174-212 8-46 (191)
108 3te6_A Regulatory protein SIR3 96.3 0.025 8.6E-07 63.3 13.0 123 173-318 44-177 (318)
109 3vkw_A Replicase large subunit 96.0 0.016 5.6E-07 67.3 9.7 107 175-312 162-268 (446)
110 3kl4_A SRP54, signal recogniti 95.9 0.047 1.6E-06 63.7 13.2 131 175-325 98-235 (433)
111 2kjq_A DNAA-related protein; s 95.8 0.005 1.7E-07 61.1 3.9 36 173-208 35-70 (149)
112 2j9r_A Thymidine kinase; TK1, 95.8 0.025 8.5E-07 59.2 9.2 39 174-212 28-66 (214)
113 1l8q_A Chromosomal replication 95.7 0.03 1E-06 63.0 10.5 36 175-210 38-73 (324)
114 1uaa_A REP helicase, protein ( 95.6 0.021 7.1E-07 71.4 9.3 87 159-259 2-92 (673)
115 1w4r_A Thymidine kinase; type 95.4 0.02 6.8E-07 59.0 6.7 39 173-211 19-57 (195)
116 2zpa_A Uncharacterized protein 95.3 0.031 1.1E-06 68.2 9.1 114 159-316 175-290 (671)
117 2w58_A DNAI, primosome compone 95.3 0.04 1.4E-06 57.1 8.9 34 175-208 55-88 (202)
118 2v1u_A Cell division control p 95.3 0.041 1.4E-06 63.2 9.8 22 174-195 44-65 (387)
119 3e2i_A Thymidine kinase; Zn-bi 95.3 0.019 6.6E-07 59.9 6.0 40 173-212 27-66 (219)
120 1pjr_A PCRA; DNA repair, DNA r 95.2 0.038 1.3E-06 69.5 9.9 87 159-260 11-101 (724)
121 2qby_B CDC6 homolog 3, cell di 95.1 0.043 1.5E-06 63.1 8.9 35 175-209 46-88 (384)
122 3u4q_A ATP-dependent helicase/ 95.0 0.024 8.3E-07 75.6 7.5 99 158-260 9-118 (1232)
123 2orv_A Thymidine kinase; TP4A 95.0 0.026 8.9E-07 59.7 6.0 40 173-212 18-57 (234)
124 2qgz_A Helicase loader, putati 94.9 0.04 1.4E-06 61.6 7.7 36 174-209 152-188 (308)
125 3bos_A Putative DNA replicatio 94.9 0.072 2.5E-06 56.5 9.4 37 173-209 51-87 (242)
126 2z4s_A Chromosomal replication 94.8 0.079 2.7E-06 62.4 10.4 36 175-210 131-168 (440)
127 1a5t_A Delta prime, HOLB; zinc 94.7 0.045 1.5E-06 62.0 7.7 37 160-196 3-46 (334)
128 1d2n_A N-ethylmaleimide-sensit 94.6 0.21 7.1E-06 54.4 12.4 21 175-195 65-85 (272)
129 3dm5_A SRP54, signal recogniti 94.5 0.24 8.3E-06 57.7 13.3 121 175-315 101-225 (443)
130 1jbk_A CLPB protein; beta barr 94.5 0.44 1.5E-05 48.0 13.8 21 175-195 44-64 (195)
131 2p65_A Hypothetical protein PF 94.4 0.12 4.1E-06 52.1 9.4 23 174-196 43-65 (187)
132 3n70_A Transport activator; si 94.2 0.022 7.6E-07 55.9 3.2 22 172-193 22-43 (145)
133 3co5_A Putative two-component 94.2 0.04 1.4E-06 54.0 4.9 23 171-193 24-46 (143)
134 2r2a_A Uncharacterized protein 94.0 0.049 1.7E-06 56.7 5.4 35 176-210 7-46 (199)
135 2chg_A Replication factor C sm 94.0 0.45 1.5E-05 49.2 13.1 40 272-312 101-140 (226)
136 1fnn_A CDC6P, cell division co 94.0 0.087 3E-06 60.5 8.1 51 176-227 46-99 (389)
137 3syl_A Protein CBBX; photosynt 93.8 0.1 3.6E-06 57.9 8.2 21 175-195 68-88 (309)
138 1g5t_A COB(I)alamin adenosyltr 93.4 0.11 3.6E-06 53.7 6.6 38 175-212 29-66 (196)
139 2px0_A Flagellar biosynthesis 93.4 0.45 1.5E-05 52.6 12.3 125 173-325 104-234 (296)
140 2bjv_A PSP operon transcriptio 93.4 0.21 7E-06 54.2 9.4 22 173-194 28-49 (265)
141 3u61_B DNA polymerase accessor 93.0 0.12 4.2E-06 57.9 7.0 39 271-309 103-141 (324)
142 1njg_A DNA polymerase III subu 92.9 0.53 1.8E-05 49.3 11.6 20 176-195 47-66 (250)
143 2qby_A CDC6 homolog 1, cell di 92.9 0.23 7.9E-06 56.7 9.3 36 174-209 45-83 (386)
144 2r6a_A DNAB helicase, replicat 92.6 0.2 6.7E-06 59.2 8.3 38 173-210 202-240 (454)
145 2q6t_A DNAB replication FORK h 92.6 0.17 5.7E-06 59.7 7.7 50 173-223 199-249 (444)
146 2w0m_A SSO2452; RECA, SSPF, un 92.6 0.21 7.1E-06 52.6 7.8 37 173-209 22-58 (235)
147 2cvh_A DNA repair and recombin 92.4 0.16 5.5E-06 53.0 6.5 35 173-210 19-53 (220)
148 2va8_A SSO2462, SKI2-type heli 92.0 0.16 5.5E-06 63.7 6.8 165 984-1172 473-656 (715)
149 3eie_A Vacuolar protein sortin 91.9 0.18 6.2E-06 56.5 6.6 21 175-195 52-72 (322)
150 3bh0_A DNAB-like replicative h 91.8 0.33 1.1E-05 54.3 8.4 51 173-224 67-117 (315)
151 1w5s_A Origin recognition comp 91.7 0.4 1.4E-05 55.4 9.3 21 175-195 51-73 (412)
152 3vfd_A Spastin; ATPase, microt 91.6 0.23 8E-06 57.3 7.2 21 174-194 148-168 (389)
153 1iqp_A RFCS; clamp loader, ext 91.5 0.62 2.1E-05 51.7 10.4 39 272-311 109-147 (327)
154 3h4m_A Proteasome-activating n 91.5 0.24 8.2E-06 54.2 6.8 22 173-194 50-71 (285)
155 3pfi_A Holliday junction ATP-d 91.3 0.59 2E-05 52.5 10.1 20 175-194 56-75 (338)
156 2gno_A DNA polymerase III, gam 91.0 0.59 2E-05 51.9 9.4 19 176-194 20-38 (305)
157 1sxj_A Activator 1 95 kDa subu 90.9 0.75 2.6E-05 55.2 11.0 32 175-209 78-109 (516)
158 3bgw_A DNAB-like replicative h 90.8 0.33 1.1E-05 57.0 7.6 38 173-210 196-233 (444)
159 1sxj_D Activator 1 41 kDa subu 90.8 0.74 2.5E-05 51.8 10.3 39 272-311 132-170 (353)
160 1vma_A Cell division protein F 90.6 0.5 1.7E-05 52.5 8.3 54 174-227 104-159 (306)
161 1n0w_A DNA repair protein RAD5 90.6 0.62 2.1E-05 49.3 8.9 39 173-211 23-67 (243)
162 1ls1_A Signal recognition part 90.6 0.76 2.6E-05 50.8 9.7 122 173-314 97-222 (295)
163 1sxj_E Activator 1 40 kDa subu 90.2 0.75 2.6E-05 51.9 9.7 43 271-314 132-174 (354)
164 1ojl_A Transcriptional regulat 90.2 0.18 6.1E-06 56.2 4.3 22 173-194 24-45 (304)
165 2qp9_X Vacuolar protein sortin 90.2 0.41 1.4E-05 54.5 7.4 22 174-195 84-105 (355)
166 1xwi_A SKD1 protein; VPS4B, AA 90.1 0.38 1.3E-05 54.0 6.9 20 175-194 46-65 (322)
167 1hqc_A RUVB; extended AAA-ATPa 90.1 0.69 2.4E-05 51.5 9.1 20 175-194 39-58 (324)
168 1nlf_A Regulatory protein REPA 89.9 1 3.4E-05 49.2 10.0 40 171-211 27-77 (279)
169 1sxj_C Activator 1 40 kDa subu 89.7 0.63 2.1E-05 52.5 8.4 39 272-311 109-147 (340)
170 3b9p_A CG5977-PA, isoform A; A 89.7 0.47 1.6E-05 52.2 7.1 21 174-194 54-74 (297)
171 2qz4_A Paraplegin; AAA+, SPG7, 89.6 0.77 2.6E-05 49.3 8.7 22 174-195 39-60 (262)
172 1jr3_A DNA polymerase III subu 89.4 1.2 4E-05 50.6 10.6 19 176-194 40-58 (373)
173 1u94_A RECA protein, recombina 89.0 0.35 1.2E-05 55.0 5.6 47 167-213 50-102 (356)
174 3hjh_A Transcription-repair-co 89.0 1 3.5E-05 53.3 9.7 60 173-236 13-72 (483)
175 1sxj_B Activator 1 37 kDa subu 88.8 1 3.6E-05 49.8 9.3 20 176-195 44-63 (323)
176 3hu3_A Transitional endoplasmi 88.5 0.68 2.3E-05 55.0 7.7 21 174-194 238-258 (489)
177 3d8b_A Fidgetin-like protein 1 88.3 0.28 9.5E-06 55.9 4.1 22 174-195 117-138 (357)
178 2p6r_A Afuhel308 helicase; pro 88.0 2.1 7E-05 53.4 12.2 139 980-1141 451-602 (702)
179 1xp8_A RECA protein, recombina 88.0 0.5 1.7E-05 53.9 5.9 96 167-286 61-165 (366)
180 3uk6_A RUVB-like 2; hexameric 87.9 1.3 4.5E-05 50.2 9.6 21 175-195 71-91 (368)
181 1zu4_A FTSY; GTPase, signal re 87.7 1.1 3.7E-05 50.1 8.4 36 173-208 104-139 (320)
182 2zan_A Vacuolar protein sortin 87.3 1.2 4E-05 52.4 8.8 35 174-210 167-201 (444)
183 3e70_C DPA, signal recognition 87.3 4.9 0.00017 44.9 13.5 125 173-316 128-255 (328)
184 3pvs_A Replication-associated 87.1 0.54 1.8E-05 55.2 5.7 20 175-194 51-70 (447)
185 3cmu_A Protein RECA, recombina 87.1 0.7 2.4E-05 63.1 7.4 47 168-214 1415-1467(2050)
186 2fna_A Conserved hypothetical 86.8 8.1 0.00028 42.9 15.3 34 161-195 18-51 (357)
187 3cf0_A Transitional endoplasmi 86.7 0.97 3.3E-05 50.0 7.3 23 173-195 48-70 (301)
188 2dr3_A UPF0273 protein PH0284; 86.5 0.6 2E-05 49.5 5.2 50 173-223 22-71 (247)
189 2v3c_C SRP54, signal recogniti 85.3 0.77 2.6E-05 53.6 5.7 35 175-209 100-134 (432)
190 2ffh_A Protein (FFH); SRP54, s 85.3 3.6 0.00012 47.6 11.3 120 174-315 98-223 (425)
191 1qvr_A CLPB protein; coiled co 85.1 0.95 3.3E-05 57.9 7.0 31 167-197 182-214 (854)
192 1q57_A DNA primase/helicase; d 84.9 0.82 2.8E-05 54.6 5.8 38 173-210 241-279 (503)
193 2chq_A Replication factor C sm 84.4 1.4 4.9E-05 48.5 7.3 20 176-195 40-59 (319)
194 3pxi_A Negative regulator of g 84.4 1.6 5.6E-05 54.9 8.6 20 176-195 523-542 (758)
195 4ag6_A VIRB4 ATPase, type IV s 84.0 0.85 2.9E-05 52.5 5.2 51 173-228 34-84 (392)
196 3m6a_A ATP-dependent protease 83.8 1 3.6E-05 54.2 6.1 22 173-194 107-128 (543)
197 1j8m_F SRP54, signal recogniti 83.0 3.3 0.00011 45.6 9.3 120 174-314 98-224 (297)
198 2zj8_A DNA helicase, putative 82.5 3.1 0.00011 52.0 10.0 172 981-1172 453-645 (720)
199 1e9r_A Conjugal transfer prote 81.8 1.3 4.4E-05 51.8 5.8 44 173-216 52-95 (437)
200 2xxa_A Signal recognition part 81.8 4.7 0.00016 46.9 10.4 91 175-285 101-195 (433)
201 2yhs_A FTSY, cell division pro 80.8 5.1 0.00017 47.1 10.1 34 175-208 294-327 (503)
202 2qen_A Walker-type ATPase; unk 80.3 3.9 0.00013 45.5 8.9 35 161-195 17-52 (350)
203 3hgt_A HDA1 complex subunit 3; 79.5 4.9 0.00017 44.5 9.0 106 439-591 123-236 (328)
204 1p9r_A General secretion pathw 79.4 2 6.8E-05 49.8 6.1 49 159-208 150-201 (418)
205 2ce7_A Cell division protein F 79.2 4.7 0.00016 47.5 9.3 20 175-194 50-69 (476)
206 2zts_A Putative uncharacterize 79.1 1.3 4.3E-05 47.0 4.1 51 173-224 29-80 (251)
207 2j37_W Signal recognition part 78.8 8.2 0.00028 45.7 11.2 121 176-315 103-226 (504)
208 1gm5_A RECG; helicase, replica 78.5 5.2 0.00018 50.2 9.9 79 441-549 417-496 (780)
209 2zr9_A Protein RECA, recombina 77.7 1.9 6.6E-05 48.7 5.2 46 167-212 48-99 (349)
210 2l8b_A Protein TRAI, DNA helic 77.6 5.3 0.00018 40.3 7.7 57 160-216 35-94 (189)
211 3hr8_A Protein RECA; alpha and 77.2 1.7 5.9E-05 49.2 4.5 49 167-215 48-102 (356)
212 2eyu_A Twitching motility prot 75.5 2.2 7.6E-05 46.1 4.7 23 171-193 22-44 (261)
213 3io5_A Recombination and repai 74.8 2 6.7E-05 47.6 4.0 89 176-286 30-124 (333)
214 4a1f_A DNAB helicase, replicat 74.7 2.9 9.8E-05 46.9 5.5 38 173-210 45-82 (338)
215 2z43_A DNA repair and recombin 74.5 2.3 7.8E-05 47.5 4.7 47 167-213 95-152 (324)
216 2oap_1 GSPE-2, type II secreti 74.2 2.5 8.4E-05 50.4 5.1 47 161-208 246-293 (511)
217 2ehv_A Hypothetical protein PH 74.1 2.7 9.2E-05 44.4 5.0 39 171-209 27-66 (251)
218 3i4u_A ATP-dependent RNA helic 72.9 9.4 0.00032 41.3 8.9 61 985-1050 21-82 (270)
219 1r6b_X CLPA protein; AAA+, N-t 72.9 14 0.00049 46.2 12.0 22 174-195 207-228 (758)
220 2r8r_A Sensor protein; KDPD, P 72.8 3.2 0.00011 43.6 5.0 36 173-208 4-40 (228)
221 2ewv_A Twitching motility prot 70.8 3.1 0.00011 47.5 4.7 36 172-208 134-171 (372)
222 1cr0_A DNA primase/helicase; R 70.8 3.8 0.00013 44.9 5.3 38 172-209 33-71 (296)
223 1v5w_A DMC1, meiotic recombina 70.0 3 0.0001 47.0 4.3 47 167-213 110-167 (343)
224 1kgd_A CASK, peripheral plasma 69.8 2.6 8.7E-05 42.5 3.3 21 173-193 4-24 (180)
225 3jvv_A Twitching mobility prot 69.5 3.6 0.00012 46.5 4.8 35 173-208 122-158 (356)
226 2yvu_A Probable adenylyl-sulfa 69.2 4.2 0.00014 41.0 4.8 36 173-208 12-47 (186)
227 3a8t_A Adenylate isopentenyltr 69.1 2.2 7.5E-05 47.7 2.8 19 175-193 41-59 (339)
228 3tau_A Guanylate kinase, GMP k 68.2 2.8 9.7E-05 43.3 3.3 22 173-194 7-28 (208)
229 3vaa_A Shikimate kinase, SK; s 68.0 2.9 9.9E-05 42.8 3.3 24 172-195 23-46 (199)
230 2gza_A Type IV secretion syste 67.9 3 0.0001 47.3 3.8 38 171-209 172-209 (361)
231 3b85_A Phosphate starvation-in 67.8 4.5 0.00015 42.0 4.8 34 162-195 10-43 (208)
232 3exa_A TRNA delta(2)-isopenten 67.4 2.5 8.7E-05 46.7 2.8 20 174-193 3-22 (322)
233 3trf_A Shikimate kinase, SK; a 65.7 3.4 0.00011 41.5 3.2 22 174-195 5-26 (185)
234 1rj9_A FTSY, signal recognitio 65.3 5.6 0.00019 43.9 5.2 36 173-208 101-136 (304)
235 1lvg_A Guanylate kinase, GMP k 65.2 3.4 0.00012 42.4 3.2 22 173-194 3-24 (198)
236 3oiy_A Reverse gyrase helicase 65.2 11 0.00039 43.0 8.1 80 439-549 62-145 (414)
237 3foz_A TRNA delta(2)-isopenten 64.1 3.3 0.00011 45.7 3.0 18 176-193 12-29 (316)
238 4fcw_A Chaperone protein CLPB; 64.1 5.5 0.00019 43.7 4.9 22 175-196 48-69 (311)
239 3ney_A 55 kDa erythrocyte memb 63.7 4 0.00014 42.0 3.3 21 173-193 18-38 (197)
240 3b9q_A Chloroplast SRP recepto 63.5 5.8 0.0002 43.7 4.9 37 173-209 99-135 (302)
241 1xjc_A MOBB protein homolog; s 63.5 7 0.00024 39.1 5.0 35 175-209 5-39 (169)
242 1qhx_A CPT, protein (chloramph 63.1 3.3 0.00011 41.3 2.5 21 174-194 3-23 (178)
243 3uie_A Adenylyl-sulfate kinase 63.1 6.4 0.00022 40.2 4.8 23 173-195 24-46 (200)
244 2qmh_A HPR kinase/phosphorylas 63.1 3.4 0.00012 42.5 2.6 21 173-193 33-53 (205)
245 2j41_A Guanylate kinase; GMP, 62.8 3.8 0.00013 41.8 3.1 22 172-193 4-25 (207)
246 2pt7_A CAG-ALFA; ATPase, prote 62.6 3.4 0.00012 46.3 2.8 22 171-192 168-189 (330)
247 2r44_A Uncharacterized protein 62.5 4.8 0.00016 44.8 4.0 28 167-194 39-66 (331)
248 1nks_A Adenylate kinase; therm 62.5 8.9 0.0003 38.4 5.8 36 176-212 3-38 (194)
249 2ze6_A Isopentenyl transferase 62.4 3.7 0.00013 44.0 2.9 19 176-194 3-21 (253)
250 4a74_A DNA repair and recombin 62.3 5.4 0.00019 41.4 4.2 39 173-211 24-68 (231)
251 3tr0_A Guanylate kinase, GMP k 62.0 4.4 0.00015 41.3 3.3 22 172-193 5-26 (205)
252 3lw7_A Adenylate kinase relate 61.9 3.3 0.00011 40.8 2.3 19 176-194 3-21 (179)
253 3lda_A DNA repair protein RAD5 61.4 6.1 0.00021 45.4 4.7 45 167-211 166-221 (400)
254 2qor_A Guanylate kinase; phosp 60.7 4.9 0.00017 41.2 3.4 23 172-194 10-32 (204)
255 2eyq_A TRCF, transcription-rep 60.6 19 0.00063 47.4 9.6 80 440-549 651-731 (1151)
256 3u4q_B ATP-dependent helicase/ 60.4 9.8 0.00034 50.3 7.0 71 177-260 4-77 (1166)
257 1zp6_A Hypothetical protein AT 60.3 4.1 0.00014 41.1 2.7 23 172-194 7-29 (191)
258 3nbx_X ATPase RAVA; AAA+ ATPas 60.1 4.7 0.00016 47.8 3.5 29 165-193 32-60 (500)
259 3hws_A ATP-dependent CLP prote 60.0 7.8 0.00027 43.7 5.3 22 173-194 50-71 (363)
260 3cmw_A Protein RECA, recombina 60.0 5.7 0.0002 53.7 4.6 96 167-286 1418-1522(1706)
261 3cmu_A Protein RECA, recombina 59.9 6.6 0.00023 53.9 5.2 46 173-219 1080-1125(2050)
262 3a00_A Guanylate kinase, GMP k 59.3 5.2 0.00018 40.4 3.3 20 174-193 1-20 (186)
263 1z6g_A Guanylate kinase; struc 59.2 5.4 0.00018 41.6 3.4 23 171-193 20-42 (218)
264 2og2_A Putative signal recogni 58.8 7.6 0.00026 43.9 4.8 35 174-208 157-191 (359)
265 3iij_A Coilin-interacting nucl 58.8 5.7 0.00019 39.7 3.4 23 173-195 10-32 (180)
266 3crm_A TRNA delta(2)-isopenten 58.7 4.7 0.00016 44.8 3.0 19 175-193 6-24 (323)
267 3cmw_A Protein RECA, recombina 58.7 9.4 0.00032 51.7 6.3 90 174-286 34-125 (1706)
268 1y63_A LMAJ004144AAA protein; 58.7 5.5 0.00019 40.2 3.3 23 173-195 9-31 (184)
269 4b4t_M 26S protease regulatory 58.6 8.1 0.00028 44.8 5.0 22 174-195 215-236 (434)
270 1ofh_A ATP-dependent HSL prote 58.4 8.5 0.00029 42.0 5.1 21 174-194 50-70 (310)
271 2vhj_A Ntpase P4, P4; non- hyd 58.3 2.6 9E-05 46.8 0.8 34 173-209 122-155 (331)
272 1kht_A Adenylate kinase; phosp 58.1 5.5 0.00019 39.9 3.2 22 174-195 3-24 (192)
273 1kag_A SKI, shikimate kinase I 58.1 5.8 0.0002 39.2 3.3 21 174-194 4-24 (173)
274 3t15_A Ribulose bisphosphate c 57.8 6.7 0.00023 42.9 4.1 32 175-209 37-68 (293)
275 1m7g_A Adenylylsulfate kinase; 57.7 9.3 0.00032 39.3 5.0 48 161-209 13-61 (211)
276 3d3q_A TRNA delta(2)-isopenten 57.6 5.5 0.00019 44.6 3.3 18 176-193 9-26 (340)
277 4b4t_J 26S protease regulatory 57.6 8.9 0.0003 43.9 5.1 22 174-195 182-203 (405)
278 1rz3_A Hypothetical protein rb 57.6 8.9 0.0003 39.2 4.7 20 175-194 23-42 (201)
279 4b4t_L 26S protease subunit RP 57.6 8.6 0.00029 44.6 5.0 21 175-195 216-236 (437)
280 1c9k_A COBU, adenosylcobinamid 57.3 4.8 0.00016 40.7 2.5 41 177-221 2-42 (180)
281 3bs4_A Uncharacterized protein 57.1 8.2 0.00028 41.5 4.5 37 174-210 21-57 (260)
282 2i1q_A DNA repair and recombin 57.1 6.8 0.00023 43.4 4.0 56 167-222 86-163 (322)
283 2pez_A Bifunctional 3'-phospho 56.5 10 0.00034 37.8 4.8 22 173-194 4-25 (179)
284 3fkq_A NTRC-like two-domain pr 56.1 10 0.00036 43.0 5.5 35 175-209 144-179 (373)
285 2jgn_A DBX, DDX3, ATP-dependen 56.0 28 0.00096 34.9 8.2 81 184-279 29-120 (185)
286 1jr3_D DNA polymerase III, del 55.8 17 0.00057 40.6 7.0 43 271-314 74-117 (343)
287 1ex7_A Guanylate kinase; subst 55.4 7.2 0.00025 39.7 3.5 18 175-192 2-19 (186)
288 2z0h_A DTMP kinase, thymidylat 55.4 11 0.00039 37.8 5.1 31 177-207 3-33 (197)
289 4gp7_A Metallophosphoesterase; 55.3 4.7 0.00016 40.2 2.1 21 173-193 8-28 (171)
290 1znw_A Guanylate kinase, GMP k 55.3 6.7 0.00023 40.3 3.3 24 170-193 16-39 (207)
291 3kb2_A SPBC2 prophage-derived 55.2 6.1 0.00021 38.8 2.9 20 176-195 3-22 (173)
292 3eph_A TRNA isopentenyltransfe 55.1 6.4 0.00022 45.0 3.4 18 176-193 4-21 (409)
293 4eun_A Thermoresistant glucoki 54.9 6.9 0.00023 40.0 3.3 22 173-194 28-49 (200)
294 3cm0_A Adenylate kinase; ATP-b 54.9 5.1 0.00017 40.2 2.3 23 173-195 3-25 (186)
295 1t6n_A Probable ATP-dependent 54.8 50 0.0017 33.7 10.1 77 441-549 82-164 (220)
296 4b4t_K 26S protease regulatory 54.8 10 0.00035 43.9 5.0 21 175-195 207-227 (428)
297 2v9p_A Replication protein E1; 54.8 7.4 0.00025 42.9 3.7 35 173-210 125-159 (305)
298 1tf7_A KAIC; homohexamer, hexa 54.3 10 0.00035 45.2 5.2 40 173-212 280-319 (525)
299 1w36_B RECB, exodeoxyribonucle 53.8 17 0.00058 48.0 7.6 52 176-227 18-81 (1180)
300 1lv7_A FTSH; alpha/beta domain 53.3 6.7 0.00023 41.7 3.1 20 175-194 46-65 (257)
301 1ly1_A Polynucleotide kinase; 53.2 6.9 0.00024 38.8 2.9 19 176-194 4-22 (181)
302 3a4m_A L-seryl-tRNA(SEC) kinas 53.1 11 0.00039 40.2 4.8 36 174-209 4-39 (260)
303 1s96_A Guanylate kinase, GMP k 52.9 7.7 0.00026 40.5 3.3 23 171-193 13-35 (219)
304 1knq_A Gluconate kinase; ALFA/ 52.7 6.7 0.00023 38.9 2.8 21 174-194 8-28 (175)
305 2c95_A Adenylate kinase 1; tra 52.7 7.8 0.00027 39.0 3.3 24 172-195 7-30 (196)
306 3nwj_A ATSK2; P loop, shikimat 52.3 8.7 0.0003 41.0 3.7 23 173-195 47-69 (250)
307 1nn5_A Similar to deoxythymidy 51.8 15 0.0005 37.6 5.3 35 173-207 8-42 (215)
308 1pzn_A RAD51, DNA repair and r 51.8 8.6 0.00029 43.3 3.7 44 167-210 119-173 (349)
309 3idw_A Actin cytoskeleton-regu 51.8 10 0.00036 31.7 3.1 26 1117-1142 42-67 (72)
310 4ddu_A Reverse gyrase; topoiso 51.7 23 0.00078 46.3 8.2 80 439-549 119-202 (1104)
311 4dyq_A Gene 1 protein; GP1, oc 51.0 9.2 0.00031 36.9 3.3 54 1094-1147 9-64 (140)
312 3lnc_A Guanylate kinase, GMP k 50.8 6.2 0.00021 41.3 2.2 22 172-193 25-46 (231)
313 1np6_A Molybdopterin-guanine d 50.8 15 0.00052 36.8 5.0 20 175-194 7-26 (174)
314 3qf7_A RAD50; ABC-ATPase, ATPa 50.5 9.3 0.00032 43.3 3.8 22 176-197 25-46 (365)
315 3i5x_A ATP-dependent RNA helic 50.4 64 0.0022 38.4 11.5 68 201-280 338-417 (563)
316 2pbr_A DTMP kinase, thymidylat 50.2 15 0.00051 36.7 5.0 32 176-207 2-33 (195)
317 1um8_A ATP-dependent CLP prote 49.8 8.7 0.0003 43.6 3.4 22 174-195 72-93 (376)
318 2plr_A DTMP kinase, probable t 49.8 16 0.00054 37.2 5.2 23 173-195 3-25 (213)
319 1tev_A UMP-CMP kinase; ploop, 49.8 7.7 0.00026 38.9 2.7 21 174-194 3-23 (196)
320 2bwj_A Adenylate kinase 5; pho 49.8 9 0.00031 38.6 3.2 24 172-195 10-33 (199)
321 4b4t_H 26S protease regulatory 49.7 12 0.0004 43.7 4.4 22 174-195 243-264 (467)
322 3c8u_A Fructokinase; YP_612366 49.7 14 0.00047 37.9 4.7 21 173-193 21-41 (208)
323 1gtv_A TMK, thymidylate kinase 49.7 7.1 0.00024 40.0 2.5 20 176-195 2-21 (214)
324 4b4t_I 26S protease regulatory 49.1 15 0.0005 42.4 5.1 22 174-195 216-237 (437)
325 1byi_A Dethiobiotin synthase; 49.1 16 0.00056 37.6 5.2 33 178-210 6-38 (224)
326 2wwf_A Thymidilate kinase, put 49.0 17 0.00058 37.0 5.3 23 173-195 9-31 (212)
327 4edh_A DTMP kinase, thymidylat 49.0 15 0.0005 38.1 4.7 37 172-208 4-40 (213)
328 1zd8_A GTP:AMP phosphotransfer 48.8 9.2 0.00031 39.9 3.2 23 173-195 6-28 (227)
329 2rhm_A Putative kinase; P-loop 48.7 8.4 0.00029 38.7 2.8 22 174-195 5-26 (193)
330 1p4x_A Staphylococcal accessor 48.6 1E+02 0.0036 32.5 11.5 66 1069-1139 133-201 (250)
331 3zq6_A Putative arsenical pump 48.6 15 0.0005 40.9 4.9 34 176-209 16-49 (324)
332 3of5_A Dethiobiotin synthetase 48.5 15 0.0005 38.6 4.7 35 176-210 6-41 (228)
333 1zuh_A Shikimate kinase; alpha 48.4 9.5 0.00033 37.5 3.1 21 175-195 8-28 (168)
334 2hjv_A ATP-dependent RNA helic 48.3 99 0.0034 29.8 10.6 80 185-280 20-110 (163)
335 3t61_A Gluconokinase; PSI-biol 48.2 9.1 0.00031 39.0 3.0 20 175-194 19-38 (202)
336 1via_A Shikimate kinase; struc 48.1 10 0.00034 37.7 3.2 21 175-195 5-25 (175)
337 2bdt_A BH3686; alpha-beta prot 48.0 7.4 0.00025 39.2 2.2 20 175-194 3-22 (189)
338 1fuk_A Eukaryotic initiation f 47.9 74 0.0025 30.9 9.6 78 187-280 17-105 (165)
339 1u0j_A DNA replication protein 47.8 15 0.00051 39.5 4.6 34 160-193 84-123 (267)
340 2v54_A DTMP kinase, thymidylat 47.8 10 0.00035 38.4 3.3 23 173-195 3-25 (204)
341 2woo_A ATPase GET3; tail-ancho 47.5 15 0.00051 40.9 4.8 34 176-209 21-54 (329)
342 1f2t_A RAD50 ABC-ATPase; DNA d 47.2 11 0.00036 36.7 3.1 19 175-193 24-42 (149)
343 3fb4_A Adenylate kinase; psych 46.7 11 0.00039 38.6 3.5 20 176-195 2-21 (216)
344 3asz_A Uridine kinase; cytidin 46.7 9.3 0.00032 39.2 2.8 21 173-193 5-25 (211)
345 2iyv_A Shikimate kinase, SK; t 46.7 11 0.00038 37.5 3.3 21 175-195 3-23 (184)
346 2c9o_A RUVB-like 1; hexameric 46.6 11 0.00038 44.1 3.7 20 175-194 64-83 (456)
347 1ihu_A Arsenical pump-driving 46.5 16 0.00056 44.2 5.3 35 175-209 9-43 (589)
348 1tf7_A KAIC; homohexamer, hexa 46.5 15 0.00051 43.8 4.9 37 173-209 38-75 (525)
349 1aky_A Adenylate kinase; ATP:A 46.4 11 0.00038 39.0 3.3 22 174-195 4-25 (220)
350 1e6c_A Shikimate kinase; phosp 45.9 11 0.00038 37.0 3.2 21 175-195 3-23 (173)
351 2ius_A DNA translocase FTSK; n 45.9 19 0.00064 42.6 5.5 27 173-199 166-192 (512)
352 3kta_A Chromosome segregation 45.9 11 0.00037 37.6 3.1 18 176-193 28-45 (182)
353 1zak_A Adenylate kinase; ATP:A 45.8 11 0.00039 38.9 3.3 22 174-195 5-26 (222)
354 2qt1_A Nicotinamide riboside k 45.8 9.8 0.00033 38.9 2.8 21 173-193 20-40 (207)
355 3dl0_A Adenylate kinase; phosp 45.5 10 0.00036 39.0 2.9 20 176-195 2-21 (216)
356 1ixz_A ATP-dependent metallopr 45.4 10 0.00035 40.2 2.9 20 175-194 50-69 (254)
357 1cke_A CK, MSSA, protein (cyti 45.2 11 0.00038 38.9 3.2 21 175-195 6-26 (227)
358 3sqw_A ATP-dependent RNA helic 45.2 80 0.0027 37.8 11.3 69 201-281 287-367 (579)
359 1tue_A Replication protein E1; 45.0 10 0.00035 39.2 2.6 33 159-192 40-76 (212)
360 1gvn_B Zeta; postsegregational 44.9 9.7 0.00033 41.6 2.7 20 175-194 34-53 (287)
361 3ug7_A Arsenical pump-driving 44.8 18 0.00061 40.7 4.9 34 176-209 28-61 (349)
362 2r62_A Cell division protease 44.6 7.2 0.00025 41.7 1.6 22 174-195 44-65 (268)
363 2cdn_A Adenylate kinase; phosp 44.6 12 0.00043 37.9 3.3 21 175-195 21-41 (201)
364 3umf_A Adenylate kinase; rossm 44.5 13 0.00043 38.8 3.3 24 173-196 28-51 (217)
365 1qf9_A UMP/CMP kinase, protein 44.5 11 0.00038 37.6 2.9 20 176-195 8-27 (194)
366 3p32_A Probable GTPase RV1496/ 44.1 18 0.00062 40.7 4.9 34 176-209 81-114 (355)
367 3sr0_A Adenylate kinase; phosp 43.8 14 0.00047 38.2 3.5 22 176-197 2-23 (206)
368 3eaq_A Heat resistant RNA depe 43.8 70 0.0024 32.7 9.1 66 200-279 29-105 (212)
369 1odf_A YGR205W, hypothetical 3 43.6 11 0.00039 41.1 3.0 18 176-193 33-50 (290)
370 4tmk_A Protein (thymidylate ki 43.4 24 0.00082 36.5 5.3 39 173-211 2-42 (213)
371 1in4_A RUVB, holliday junction 43.0 12 0.00042 41.7 3.2 21 175-195 52-72 (334)
372 1hyq_A MIND, cell division inh 42.7 21 0.00073 37.8 5.0 32 178-209 7-38 (263)
373 1ak2_A Adenylate kinase isoenz 42.7 16 0.00054 38.2 3.8 24 173-196 15-38 (233)
374 2p6n_A ATP-dependent RNA helic 42.5 64 0.0022 32.4 8.3 65 201-279 53-128 (191)
375 1g8p_A Magnesium-chelatase 38 42.5 9.1 0.00031 42.6 2.0 21 174-194 45-65 (350)
376 2f1r_A Molybdopterin-guanine d 42.5 9.6 0.00033 38.1 2.0 21 175-195 3-23 (171)
377 3pxg_A Negative regulator of g 42.3 16 0.00053 43.0 4.1 22 174-195 201-222 (468)
378 2rb4_A ATP-dependent RNA helic 42.3 43 0.0015 33.0 6.9 65 201-279 33-108 (175)
379 1g3q_A MIND ATPase, cell divis 42.2 19 0.00065 37.4 4.4 32 178-209 7-38 (237)
380 2jaq_A Deoxyguanosine kinase; 42.1 13 0.00044 37.6 3.0 20 176-195 2-21 (205)
381 3tif_A Uncharacterized ABC tra 41.9 12 0.00039 39.6 2.6 19 173-191 30-48 (235)
382 3auy_A DNA double-strand break 41.9 12 0.00043 42.3 3.1 21 175-195 26-46 (371)
383 4e22_A Cytidylate kinase; P-lo 41.7 14 0.00048 39.3 3.3 23 173-195 26-48 (252)
384 4akg_A Glutathione S-transfera 41.6 28 0.00097 49.5 7.0 48 169-216 918-967 (2695)
385 2vli_A Antibiotic resistance p 41.6 12 0.0004 37.2 2.5 22 173-194 4-25 (183)
386 1oyw_A RECQ helicase, ATP-depe 41.4 39 0.0013 40.1 7.5 74 442-549 66-145 (523)
387 3v9p_A DTMP kinase, thymidylat 41.4 19 0.00066 37.7 4.2 38 171-208 22-63 (227)
388 1yrb_A ATP(GTP)binding protein 41.4 19 0.00066 38.0 4.4 33 176-209 16-48 (262)
389 2pt5_A Shikimate kinase, SK; a 41.3 14 0.00047 36.1 2.9 20 176-195 2-21 (168)
390 1ukz_A Uridylate kinase; trans 41.2 14 0.00046 37.6 2.9 20 175-194 16-35 (203)
391 2v1x_A ATP-dependent DNA helic 41.2 39 0.0013 40.8 7.5 59 441-533 84-144 (591)
392 3ice_A Transcription terminati 41.1 20 0.0007 40.7 4.5 35 160-194 157-194 (422)
393 1uf9_A TT1252 protein; P-loop, 41.0 13 0.00046 37.5 2.9 20 176-195 10-29 (203)
394 1e4v_A Adenylate kinase; trans 41.0 13 0.00045 38.2 2.9 21 176-196 2-22 (214)
395 1nij_A Hypothetical protein YJ 40.9 14 0.00046 41.0 3.1 34 176-211 6-39 (318)
396 3be4_A Adenylate kinase; malar 40.9 15 0.0005 38.0 3.2 22 174-195 5-26 (217)
397 2ph1_A Nucleotide-binding prot 40.8 20 0.00069 38.2 4.4 32 178-209 23-54 (262)
398 1qvr_A CLPB protein; coiled co 40.8 17 0.00057 46.3 4.3 20 176-195 590-609 (854)
399 1iy2_A ATP-dependent metallopr 40.8 13 0.00045 40.0 2.9 19 175-193 74-92 (278)
400 3lv8_A DTMP kinase, thymidylat 40.7 28 0.00095 36.7 5.3 32 173-204 26-57 (236)
401 4eaq_A DTMP kinase, thymidylat 40.7 20 0.00067 37.6 4.2 35 173-208 25-59 (229)
402 4dzz_A Plasmid partitioning pr 40.7 18 0.00062 36.6 3.8 112 179-326 7-120 (206)
403 1ye8_A Protein THEP1, hypothet 40.6 15 0.00051 36.9 3.1 18 176-193 2-19 (178)
404 2d7d_A Uvrabc system protein B 40.5 73 0.0025 39.0 9.9 78 195-286 438-526 (661)
405 2if2_A Dephospho-COA kinase; a 40.3 14 0.00048 37.5 2.9 19 176-194 3-21 (204)
406 3kjh_A CO dehydrogenase/acetyl 40.2 19 0.00064 37.7 4.0 32 177-208 3-34 (254)
407 2i3b_A HCR-ntpase, human cance 40.1 16 0.00056 37.0 3.3 42 271-315 103-146 (189)
408 3k1j_A LON protease, ATP-depen 39.5 21 0.00071 43.4 4.7 25 169-193 55-79 (604)
409 3fe2_A Probable ATP-dependent 39.5 1.2E+02 0.004 31.5 10.2 76 440-549 101-182 (242)
410 1jjv_A Dephospho-COA kinase; P 39.3 15 0.00051 37.4 3.0 19 176-194 4-22 (206)
411 3q9l_A Septum site-determining 39.1 22 0.00077 37.4 4.4 31 178-208 7-37 (260)
412 3tlx_A Adenylate kinase 2; str 39.0 19 0.00065 38.0 3.8 23 173-195 28-50 (243)
413 2elh_A CG11849-PA, LD40883P; s 38.7 64 0.0022 27.8 6.6 52 1097-1148 22-74 (87)
414 2bbw_A Adenylate kinase 4, AK4 38.7 17 0.00058 38.3 3.3 22 173-194 26-47 (246)
415 2iut_A DNA translocase FTSK; n 38.7 28 0.00097 41.6 5.5 38 174-211 214-255 (574)
416 1sq5_A Pantothenate kinase; P- 38.3 21 0.00073 39.1 4.2 20 174-193 80-99 (308)
417 2cbz_A Multidrug resistance-as 38.2 14 0.00049 38.9 2.6 20 173-192 30-49 (237)
418 1c4o_A DNA nucleotide excision 38.0 88 0.003 38.3 10.1 77 195-285 432-519 (664)
419 3tqc_A Pantothenate kinase; bi 38.0 38 0.0013 37.5 6.1 18 176-193 94-111 (321)
420 2x8a_A Nuclear valosin-contain 38.0 16 0.00054 39.5 3.0 19 175-193 45-63 (274)
421 3iqw_A Tail-anchored protein t 37.4 24 0.00081 39.4 4.4 35 175-209 17-51 (334)
422 2xb4_A Adenylate kinase; ATP-b 37.4 17 0.00057 37.8 3.0 20 176-195 2-21 (223)
423 1tc3_C Protein (TC3 transposas 37.3 30 0.001 25.6 3.7 34 1103-1136 12-45 (51)
424 1g41_A Heat shock protein HSLU 37.2 18 0.00062 42.0 3.4 20 174-193 50-69 (444)
425 1htw_A HI0065; nucleotide-bind 36.9 25 0.00085 34.5 4.0 22 172-193 31-52 (158)
426 3nh6_A ATP-binding cassette SU 36.7 14 0.00049 40.6 2.4 21 172-192 78-98 (306)
427 3qks_A DNA double-strand break 36.7 18 0.00063 37.0 3.1 19 175-193 24-42 (203)
428 3gfo_A Cobalt import ATP-bindi 36.7 15 0.00052 39.8 2.5 20 173-192 33-52 (275)
429 2oca_A DAR protein, ATP-depend 36.6 1.2E+02 0.0041 35.4 10.7 73 198-283 343-426 (510)
430 2i4i_A ATP-dependent RNA helic 36.6 82 0.0028 35.5 9.0 72 194-279 268-350 (417)
431 2p5t_B PEZT; postsegregational 36.5 13 0.00045 39.5 2.0 20 175-194 33-52 (253)
432 1sgw_A Putative ABC transporte 36.2 17 0.00057 37.8 2.7 20 173-192 34-53 (214)
433 2pze_A Cystic fibrosis transme 36.1 16 0.00055 38.3 2.6 20 173-192 33-52 (229)
434 3nwn_A Kinesin-like protein KI 36.1 23 0.00079 39.9 4.0 25 167-191 96-122 (359)
435 2woj_A ATPase GET3; tail-ancho 36.1 28 0.00094 39.2 4.7 35 176-210 20-56 (354)
436 3hjn_A DTMP kinase, thymidylat 36.0 34 0.0012 34.8 5.0 36 177-212 3-39 (197)
437 2ff7_A Alpha-hemolysin translo 35.9 16 0.00056 38.8 2.6 21 173-193 34-54 (247)
438 3pxi_A Negative regulator of g 35.7 23 0.0008 44.2 4.4 22 174-195 201-222 (758)
439 2ghi_A Transport protein; mult 35.7 16 0.00056 39.1 2.6 21 173-193 45-65 (260)
440 2afh_E Nitrogenase iron protei 35.6 31 0.0011 37.2 4.9 32 177-208 5-36 (289)
441 1bg2_A Kinesin; motor protein, 35.4 25 0.00084 39.1 4.0 25 167-191 69-95 (325)
442 2pcj_A ABC transporter, lipopr 35.2 17 0.00058 38.0 2.5 20 173-192 29-48 (224)
443 1cp2_A CP2, nitrogenase iron p 35.1 32 0.0011 36.6 4.8 32 177-208 4-35 (269)
444 4aik_A Transcriptional regulat 34.9 1E+02 0.0036 29.4 8.2 62 981-1046 60-130 (151)
445 3end_A Light-independent proto 34.8 32 0.0011 37.5 4.8 34 175-208 42-75 (307)
446 4g1u_C Hemin import ATP-bindin 34.5 18 0.0006 39.0 2.6 20 173-192 36-55 (266)
447 1v8k_A Kinesin-like protein KI 34.5 26 0.00088 40.2 4.1 24 168-191 147-172 (410)
448 2grj_A Dephospho-COA kinase; T 34.4 20 0.0007 36.4 2.9 47 176-228 14-64 (192)
449 3ber_A Probable ATP-dependent 34.4 2.6E+02 0.0089 29.0 12.0 75 441-549 111-192 (249)
450 2qm8_A GTPase/ATPase; G protei 34.4 32 0.0011 38.4 4.8 37 173-209 54-90 (337)
451 1g6h_A High-affinity branched- 34.3 18 0.00061 38.7 2.6 21 172-192 31-51 (257)
452 2p67_A LAO/AO transport system 34.2 31 0.0011 38.4 4.7 35 174-208 56-90 (341)
453 1ji0_A ABC transporter; ATP bi 34.1 18 0.00062 38.2 2.6 20 173-192 31-50 (240)
454 1vht_A Dephospho-COA kinase; s 34.1 20 0.00069 36.8 3.0 20 175-194 5-24 (218)
455 2xau_A PRE-mRNA-splicing facto 34.0 71 0.0024 39.9 8.4 66 981-1050 488-553 (773)
456 2jeo_A Uridine-cytidine kinase 33.9 18 0.00061 38.2 2.5 21 173-193 24-44 (245)
457 1mv5_A LMRA, multidrug resista 33.8 16 0.00054 38.7 2.1 20 173-192 27-46 (243)
458 3dc4_A Kinesin-like protein NO 33.8 24 0.00083 39.4 3.7 25 167-191 86-112 (344)
459 3f9v_A Minichromosome maintena 33.8 15 0.00053 44.4 2.2 18 176-193 329-346 (595)
460 3cwq_A Para family chromosome 33.7 35 0.0012 34.9 4.7 36 178-214 5-42 (209)
461 1b0u_A Histidine permease; ABC 33.7 18 0.00063 38.7 2.6 20 173-192 31-50 (262)
462 4etp_A Kinesin-like protein KA 33.5 25 0.00087 40.2 3.9 26 167-192 132-159 (403)
463 2www_A Methylmalonic aciduria 33.4 36 0.0012 38.1 5.1 35 175-209 75-109 (349)
464 1t5c_A CENP-E protein, centrom 33.4 27 0.00093 39.1 4.0 25 167-191 69-95 (349)
465 3cio_A ETK, tyrosine-protein k 33.3 36 0.0012 37.2 4.9 34 175-208 105-139 (299)
466 2h58_A Kinesin-like protein KI 33.3 28 0.00095 38.7 4.0 26 166-191 71-98 (330)
467 3b6u_A Kinesin-like protein KI 33.1 27 0.00094 39.4 4.0 25 167-191 93-119 (372)
468 1a7j_A Phosphoribulokinase; tr 33.1 22 0.00076 38.7 3.1 20 175-194 6-25 (290)
469 3gbj_A KIF13B protein; kinesin 33.1 28 0.00094 39.2 4.0 25 167-191 84-110 (354)
470 3io3_A DEHA2D07832P; chaperone 33.0 34 0.0012 38.3 4.7 36 175-210 19-56 (348)
471 2nr8_A Kinesin-like protein KI 33.0 28 0.00095 39.2 4.0 25 167-191 95-121 (358)
472 4a14_A Kinesin, kinesin-like p 33.0 28 0.00096 38.9 4.0 25 167-191 75-101 (344)
473 3ea0_A ATPase, para family; al 32.8 33 0.0011 35.7 4.4 31 178-208 9-40 (245)
474 2y65_A Kinesin, kinesin heavy 32.7 29 0.00098 39.2 4.0 25 167-191 76-102 (365)
475 2vvg_A Kinesin-2; motor protei 32.7 29 0.00098 38.9 4.0 25 167-191 81-107 (350)
476 1vpl_A ABC transporter, ATP-bi 32.6 20 0.00068 38.4 2.6 20 173-192 40-59 (256)
477 2zu0_C Probable ATP-dependent 32.5 24 0.00082 37.9 3.3 21 173-193 45-65 (267)
478 2oze_A ORF delta'; para, walke 32.5 40 0.0014 36.4 5.2 41 174-214 34-79 (298)
479 3bfv_A CAPA1, CAPB2, membrane 32.4 33 0.0011 36.9 4.4 34 175-208 83-117 (271)
480 2ixe_A Antigen peptide transpo 32.3 20 0.00068 38.7 2.6 21 172-192 43-63 (271)
481 1goj_A Kinesin, kinesin heavy 32.3 28 0.00095 39.2 3.8 25 167-191 72-98 (355)
482 2d2e_A SUFC protein; ABC-ATPas 32.3 25 0.00084 37.4 3.3 21 173-193 28-48 (250)
483 3aez_A Pantothenate kinase; tr 32.0 21 0.00073 39.3 2.8 21 173-193 89-109 (312)
484 2qi9_C Vitamin B12 import ATP- 32.0 21 0.0007 38.0 2.6 20 173-192 25-44 (249)
485 3lre_A Kinesin-like protein KI 32.0 28 0.00096 39.1 3.8 25 167-191 97-123 (355)
486 2zfi_A Kinesin-like protein KI 31.8 30 0.001 39.0 4.0 25 167-191 81-107 (366)
487 2yz2_A Putative ABC transporte 31.8 21 0.00071 38.4 2.6 20 173-192 32-51 (266)
488 1x88_A Kinesin-like protein KI 31.8 29 0.00099 39.1 3.9 25 167-191 80-106 (359)
489 2nq2_C Hypothetical ABC transp 31.7 20 0.0007 38.1 2.5 20 173-192 30-49 (253)
490 2olj_A Amino acid ABC transpor 31.6 21 0.00072 38.3 2.6 20 173-192 49-68 (263)
491 2ihy_A ABC transporter, ATP-bi 31.6 21 0.00071 38.7 2.6 20 173-192 46-65 (279)
492 3e6m_A MARR family transcripti 31.5 62 0.0021 31.2 5.9 64 979-1046 79-151 (161)
493 3cob_A Kinesin heavy chain-lik 31.5 27 0.00092 39.5 3.5 25 167-191 71-97 (369)
494 2pl3_A Probable ATP-dependent 31.5 1.7E+02 0.0059 29.8 9.8 75 440-549 96-177 (236)
495 1q3t_A Cytidylate kinase; nucl 31.4 26 0.0009 36.6 3.3 23 173-195 15-37 (236)
496 1uj2_A Uridine-cytidine kinase 31.4 23 0.0008 37.4 2.9 19 176-194 24-42 (252)
497 3qxc_A Dethiobiotin synthetase 31.1 46 0.0016 35.1 5.2 36 175-210 22-58 (242)
498 3qkt_A DNA double-strand break 31.1 24 0.00083 39.3 3.1 19 175-193 24-42 (339)
499 1wcv_1 SOJ, segregation protei 31.1 28 0.00095 36.9 3.5 34 175-208 7-41 (257)
500 3r20_A Cytidylate kinase; stru 31.0 25 0.00084 37.1 2.9 19 177-195 12-30 (233)
No 1
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-119 Score=1170.84 Aligned_cols=902 Identities=26% Similarity=0.392 Sum_probs=654.9
Q ss_pred ChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC
Q 001047 148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG 227 (1174)
Q Consensus 148 ~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g 227 (1174)
....+...++|+|+|+|.+||+.+.+|+++||+||||||||++|++|++..+.++++++|++||++|++|++++|.+.++
T Consensus 173 ~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~ 252 (1108)
T 3l9o_A 173 KRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG 252 (1108)
T ss_dssp CCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC
Confidence 33456788899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCeEEEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccE
Q 001047 228 DNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307 (1174)
Q Consensus 228 ~~~v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qi 307 (1174)
.+++++|+...+.+++|+||||++|++++++ ....+.++++|||||||++.+.+|+..|+.++..+++++|+
T Consensus 253 --~VglltGd~~~~~~~~IlV~Tpe~L~~~L~~------~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qv 324 (1108)
T 3l9o_A 253 --DVGLMTGDITINPDAGCLVMTTEILRSMLYR------GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRY 324 (1108)
T ss_dssp --SEEEECSSCBCCCSCSEEEEEHHHHHHHHHH------CSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEE
T ss_pred --CccEEeCccccCCCCCEEEeChHHHHHHHHc------CccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceE
Confidence 4999999999999999999999999999987 34457899999999999999999999999999999999999
Q ss_pred EEEccccCChHHHHHHHhcccC-ceeeecCCCCccccEEeecc--cccccccccccccccchhhhhhhhhcccccCCCcc
Q 001047 308 ICLSATVANADELAGWIGQIHG-KTELITSSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 384 (1174)
Q Consensus 308 I~LSATl~n~~~~~~~l~~~~~-~~~~i~~~~rpvpl~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 384 (1174)
|+||||++|..+++.|+....+ ++.++....+|+|+.+++.. ...++.+++..+......+.......... ..
T Consensus 325 l~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~----~~ 400 (1108)
T 3l9o_A 325 VFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ----IG 400 (1108)
T ss_dssp EEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC---------
T ss_pred EEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhh----hc
Confidence 9999999999999999998765 68899999999999887753 23344444444333222211100000000 00
Q ss_pred CCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhc
Q 001047 385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC 464 (1174)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~ 464 (1174)
.. ........... ... ... .........+..++..+...+.+++||||++++.|+.++..|...
T Consensus 401 ~~-~~~~~~~~~~~-~~~-----------~~~---~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~ 464 (1108)
T 3l9o_A 401 DD-PNSTDSRGKKG-QTY-----------KGG---SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL 464 (1108)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSH
T ss_pred cc-ccccccccccc-ccc-----------ccc---cccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhc
Confidence 00 00000000000 000 000 000001234455666677777889999999999999999999876
Q ss_pred CCCCHHhHHHHHHHHHHHHhhCCcc-----chhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcC
Q 001047 465 NLLDECEMSEVELALKRFRILYPDA-----VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 539 (1174)
Q Consensus 465 ~~~~~~e~~~i~~~~~~~~~~~~~~-----~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GI 539 (1174)
++.+..+...+...+.......++. ....+...+.+||++|||+|++.+|+.+++.|++|.++|||||+++++||
T Consensus 465 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GI 544 (1108)
T 3l9o_A 465 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGL 544 (1108)
T ss_dssp HHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCC
T ss_pred cCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCC
Confidence 6555444444444333221111111 11245677889999999999999999999999999999999999999999
Q ss_pred CcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhhCCCcceeeeeccchhH
Q 001047 540 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 619 (1174)
Q Consensus 540 DiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~~~~~pl~S~f~~~y~~ 619 (1174)
|+|++++||++..+|++....|+|+.+|+||+|||||.|.+..|+||+++++......+.+++.+.+.|+.|+|..+|+|
T Consensus 545 DiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~ 624 (1108)
T 3l9o_A 545 NMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNM 624 (1108)
T ss_dssp CC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_pred CCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHH
Confidence 99999999999999998878899999999999999999999999999999998888889999999999999999999999
Q ss_pred HHHHhhhchhccccCchhHHHHHHhCCCHHHHHHHHHhhHHhhhccchhhHhHHHHHHHHHHHHHHHhhhchhhhhhHHh
Q 001047 620 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSR 699 (1174)
Q Consensus 620 vlnll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sf~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1174)
+||+|+. .+.. ++.++++||++|+....++..++++.+++.+++.+..
T Consensus 625 ilnll~~-----------------~~~~---~~~~l~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 672 (1108)
T 3l9o_A 625 ILNLMRV-----------------EGIS---PEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEV------------ 672 (1108)
T ss_dssp HHHHHHS-----------------TTCC---HHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHTTCCC------------
T ss_pred HHHHHHh-----------------cCCC---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccc------------
Confidence 9999972 2443 4899999999999998877766666666666554432
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcceEEEeeecCCCcEeecceEEecccCCC
Q 001047 700 RLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSL 779 (1174)
Q Consensus 700 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1174)
+.++++.+|++|+.+++++++.++.+... ....+..+.+|++ +.+ ++..|. ...++|++......
T Consensus 673 --~~~~~~~~y~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~G~~--v~~--~~~~~~-~~~~~~v~~~~~~~ 737 (1108)
T 3l9o_A 673 --EDEENVKEYHEIEQAIKGYREDVRQVVTH--------PANALSFLQPGRL--VEI--SVNGKD-NYGWGAVVDFAKRI 737 (1108)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHHHHHHHS--------HHHHHHHCCTTEE--EEE--CCTTCC-EEEEEEEEEECCCC
T ss_pred --CchhhHHHHHHHHHHHHHHHHHHHHHHhC--------hHHHHhhCCCCCE--EEE--ecCCCc-ccceEEEEeccccc
Confidence 12679999999999999887766543321 2224556678987 333 222133 34456665422110
Q ss_pred chh-----hhhcccccchhhhhhhhccCCCCCCCCC-CCCCcccc---ccCCCCcee--eecccceeeEeec--CCCCcc
Q 001047 780 DSS-----KLKNMASINDSFALNRLAQSNGDDYDTQ-DVKPSYYV---ALGSDNTWY--TFTEKWIKTVYRI--GFPNVA 846 (1174)
Q Consensus 780 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~ 846 (1174)
+.. ......++++++..|........-.+.. ...| ..+ ..+.++.|. +++...+..|+.. .+|.
T Consensus 738 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 814 (1108)
T 3l9o_A 738 NKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPTLP-EGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPK-- 814 (1108)
T ss_dssp -----CCSSSSEEEEEECCCSTTCCSCCCSSCTTTTCCSGG-GSSCCSCC---CCCCCCCEESSCEEEEEEEECCCCT--
T ss_pred ccccccccCCCCCceeEEEEeccccccccccccccccccCC-ccccCCCcccCCceEEEEechhheeeccceEEecCC--
Confidence 000 0111234455555543211100000000 0001 001 123445554 4456667777654 2331
Q ss_pred ccccCCCChhhhhhhhhhhhHHHHHhhhhhccCcccccCcccccccccCCCCcccccchhhhhhhccccchhHHhHHHHH
Q 001047 847 LAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQR 926 (1174)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1174)
+..+.+.+.. .... ..++.. +++.++|.++|+.+ |++. ...+.++.
T Consensus 815 ----~~~~~~~~~~-------~~~~--~~~~~~-----------~~~~~~~~~~~~~~------~~~~----~~~~~~~~ 860 (1108)
T 3l9o_A 815 ----DIRASGQKET-------VGKS--LREVNR-----------RFPDGIPVLDPVKN------MKIE----DEDFLKLM 860 (1108)
T ss_dssp ----TTTSHHHHHH-------HHHH--HHHHHH-----------HCSSCCTTHHHHHH------HCCC----CHHHHHHH
T ss_pred ----CcCCHHHHHH-------HHHH--HHHHHH-----------hcCCCCcccChhhh------cccC----CHHHHHHH
Confidence 1122222211 1111 111111 23567888888643 5544 35567788
Q ss_pred HHHHHHHHHHHhccCcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccc-cHHHHhhHHHHHhhcCCccCCCCccC
Q 001047 927 TKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPS-GWKEFLRISNVIHETRALDINTQVIF 1005 (1174)
Q Consensus 927 ~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~-~~~~f~~~~~VL~~lgyl~~~~~~vt 1005 (1174)
.+++.|+++|.+||||.|++ +++|+++++++.+|+++++.|++++++.++. ++++|+++++||++|||||.++ +||
T Consensus 861 ~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~-~v~ 937 (1108)
T 3l9o_A 861 KKIDVLNTKLSSNPLTNSMR--LEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPND-IIE 937 (1108)
T ss_dssp HHHHHHHHHHHHSSCTTCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHTSCTTTC-CCS
T ss_pred HHHHHHHHHHHhCCCcCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCcCCCC-cCc
Confidence 89999999999999999998 5899999999999999999999999996555 7789999999999999999875 999
Q ss_pred hhhHHHHhhcCCchHHHHHHHHhcccCCCCHHhHHHHHhhhccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 001047 1006 PLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLE 1085 (1174)
Q Consensus 1006 ~~Gr~a~~i~~~~eLllte~l~~g~~~~L~p~~laA~~s~~v~e~~~~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 1085 (1174)
+|||+||+|+++||||+|||||+|+|++|+|+||||||||||||. |..+ .+.+++.|.+++++++++|++|++
T Consensus 938 ~kgr~a~~i~~~~el~~~e~~~~~~~~~l~~~~~aa~~s~~v~~~---~~~~----~~~~~~~l~~~~~~~~~~~~~i~~ 1010 (1108)
T 3l9o_A 938 LKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQE---RCKE----APRLKPELAEPLKAMREIAAKIAK 1010 (1108)
T ss_dssp HHHHHHHC-CCTTHHHHHHHHHHHCCCSSCCTHHHHHTCC-------------------------CHHHHHHHHHHHHHH
T ss_pred HHhHHHHHhcCccHHHHHHHHHhCcccCCCHHHHHHHHhheeeec---ccCC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 6532 235689999999999999999999
Q ss_pred HHHHcCCCCCCC-----CChhHHHHHHHHhCCCCHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHH
Q 001047 1086 LQEKHGVEIPCC-----LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAV 1158 (1174)
Q Consensus 1086 ~~~~~~~~~~~~-----~~~~l~~~v~~Wa~G~~~~~i~~~t~l~eGd~vR~~rrl~dll~Qi~~~~~~--~~~l~~~~~ 1158 (1174)
+|.+|||+++.+ |+|+||++||+||+|+||++||++|+++|||||||||||+||||||++|+++ |++|++||+
T Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~l~q~~~aa~~~g~~~l~~k~~ 1090 (1108)
T 3l9o_A 1011 IMKDSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKME 1090 (1108)
T ss_dssp HHHHTTCSCHHHHHHHHHCCSCHHHHHHHHC----CCGGGTC--CHHHHHHHHHHHHHHHSCCCC----CCCHHHHHHHH
T ss_pred HHHHhCCCCChHHhccCCChHHHHHHHHHhCCCCHHHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 999999999753 9999999999999999999999999999999999999999999999999986 999999999
Q ss_pred HHHhccCCCCccc
Q 001047 1159 DASNVMDRPPISE 1171 (1174)
Q Consensus 1159 ~a~~~i~R~~v~~ 1171 (1174)
+|+++|+||||.-
T Consensus 1091 ~a~~~i~r~iv~~ 1103 (1108)
T 3l9o_A 1091 AVLKLIHRDIVSA 1103 (1108)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHhcCCEEee
Confidence 9999999999974
No 2
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-115 Score=1129.10 Aligned_cols=895 Identities=26% Similarity=0.401 Sum_probs=689.4
Q ss_pred hhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEE
Q 001047 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232 (1174)
Q Consensus 153 ~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ 232 (1174)
...++|+|+++|.+|++.+.+|++++|+||||||||++|.++++..+..+.++||++||++|++|++++|.+.|+ .++
T Consensus 80 ~~~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~--~vg 157 (1010)
T 2xgj_A 80 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG--DVG 157 (1010)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHS--CEE
T ss_pred HHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhC--CEE
Confidence 667889999999999999999999999999999999999999999999999999999999999999999999998 599
Q ss_pred EEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEcc
Q 001047 233 LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 312 (1174)
Q Consensus 233 lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSA 312 (1174)
+++|+...+.+++|+|||||+|.+++++ ....+.++++|||||||++.+..|+..|+.++..+++++|+|+|||
T Consensus 158 lltGd~~~~~~~~IvV~Tpe~L~~~L~~------~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSA 231 (1010)
T 2xgj_A 158 LMTGDITINPDAGCLVMTTEILRSMLYR------GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSA 231 (1010)
T ss_dssp EECSSCEECTTCSEEEEEHHHHHHHHHH------TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEEC
T ss_pred EEeCCCccCCCCCEEEEcHHHHHHHHHc------CcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEcC
Confidence 9999999999999999999999999986 3556889999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHhcccC-ceeeecCCCCccccEEeeccc--ccccccccccccccchhhhhhhhhcccccCCCccCCCcc
Q 001047 313 TVANADELAGWIGQIHG-KTELITSSRRPVPLTWYFSTK--TALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389 (1174)
Q Consensus 313 Tl~n~~~~~~~l~~~~~-~~~~i~~~~rpvpl~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 389 (1174)
|++|..+|+.|+....+ ++.++....+|+|+.+++... ..++.+++..+......+....-................
T Consensus 232 Ti~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 311 (1010)
T 2xgj_A 232 TIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSR 311 (1010)
T ss_dssp CCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-------------
T ss_pred CCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccc
Confidence 99999999999987655 688888999999998887542 234444444333222221110000000000000000000
Q ss_pred ccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCH
Q 001047 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDE 469 (1174)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~ 469 (1174)
+.... ..+.. .........+..++..+...+..++||||++++.|+.++..|..+++...
T Consensus 312 -------g~~~~-----------~~k~~--~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~ 371 (1010)
T 2xgj_A 312 -------GKKGQ-----------TYKGG--SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSD 371 (1010)
T ss_dssp -------------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCH
T ss_pred -------ccccc-----------ccccc--cccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCCh
Confidence 00000 00000 00000022344455556666667999999999999999999999999998
Q ss_pred HhHHHHHHHHHHHHhhCCccch-----hhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCc
Q 001047 470 CEMSEVELALKRFRILYPDAVR-----EPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 544 (1174)
Q Consensus 470 ~e~~~i~~~~~~~~~~~~~~~~-----~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v 544 (1174)
.+...+...+......+....+ ..+..++.+||++|||||++.+|+.+++.|++|.++|||||+++++|||+|++
T Consensus 372 ~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~ 451 (1010)
T 2xgj_A 372 DEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAK 451 (1010)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBS
T ss_pred HHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCc
Confidence 8888888877766655544332 24567788999999999999999999999999999999999999999999999
Q ss_pred eEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhhCCCcceeeeeccchhHHHHHh
Q 001047 545 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 624 (1174)
Q Consensus 545 ~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~~~~~pl~S~f~~~y~~vlnll 624 (1174)
++||++..+|++....|.|+.+|+||+|||||.|.|..|.||+++++..+...+.+++.+.++|+.|+|..+|+|++|+|
T Consensus 452 ~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~~~~ilnll 531 (1010)
T 2xgj_A 452 TVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 531 (1010)
T ss_dssp EEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCCHHHHHHHH
T ss_pred eEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccccCCcHHHHHHHH
Confidence 99999999998877789999999999999999999999999999998877888899999999999999999999999999
Q ss_pred hhchhccccCchhHHHHHHhCCCHHHHHHHHHhhHHhhhccchhhHhHHHHHHHHHHHHHHHhhhchhhhhhHHhhhcCH
Q 001047 625 AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSE 704 (1174)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sf~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1174)
+. .+.+ .+++++++|++|+........+.++.+++..++.+... .+
T Consensus 532 ~~-----------------~~~~---~e~ll~rsf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------~~ 577 (1010)
T 2xgj_A 532 RV-----------------EGIS---PEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVE--------------DE 577 (1010)
T ss_dssp HS-----------------SSCC---HHHHHHHCHHHHHHHHHHHHHHHHC-CHHHHHHSSCCC--------------SC
T ss_pred Hh-----------------cCCC---HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccC--------------Ch
Confidence 72 2444 48899999999999777666555666555555544321 14
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcceEEEeeecCCCcEeecceEEecccCC-Cchh-
Q 001047 705 AAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDS-LDSS- 782 (1174)
Q Consensus 705 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 782 (1174)
.++.+|++++.++.++++.+..... .....+..+.+|++ +.+. +..|. ...++|++..... .+++
T Consensus 578 ~~~~~y~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~Gr~--v~~~--~~~~~-~~~~~v~~~~~~~~~~~~~ 644 (1010)
T 2xgj_A 578 ENVKEYHEIEQAIKGYREDVRQVVT--------HPANALSFLQPGRL--VEIS--VNGKD-NYGWGAVVDFAKRINKRNP 644 (1010)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHT--------SHHHHGGGCCTTEE--EEEE--ETTTE-EEEEEEEEEEEECCCSSCT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh--------ccHHHHhhcCCCcE--EEEE--cCCCC-cceeEEEEecccccCCCcc
Confidence 5889999999999988665544322 12234666779987 3332 22243 3455666542110 0011
Q ss_pred --hh-hcccccchhhhhhhhc--c---CCC-CCCCCCCCCCccccccCCCCcee--eecccceeeEeec--CCCCccccc
Q 001047 783 --KL-KNMASINDSFALNRLA--Q---SNG-DDYDTQDVKPSYYVALGSDNTWY--TFTEKWIKTVYRI--GFPNVALAQ 849 (1174)
Q Consensus 783 --~~-~~~~~~~~~~~~~~~~--~---~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~ 849 (1174)
.. ....+.+++++.|... . ... .........|+ .++.++.|+ ++...++..|+.. .+|.
T Consensus 645 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 716 (1010)
T 2xgj_A 645 SAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPTLPEGIRPA---EEGEKSICAVIPITLDSIKSIGNLRLYMPK----- 716 (1010)
T ss_dssp TCCCCTTTTEEEEEEEEEEETTSCGGGCCTTCCCCCTTCCBC---CTTCCEEEEEEEECGGGEEEEEEEECCCCS-----
T ss_pred ccccccCCceeEEEEeeccccccccccccccccccccccCCC---CCCcCCceEEEEechhhcceeeeeeEeccc-----
Confidence 00 0112334455544211 0 000 00011122222 256778888 5567788888853 3331
Q ss_pred cCCCChhhhhhhhhhhhHHHHHhhhhhccCcccccCcccccccccCCCCcccccchhhhhhhccccchhHHhHHHHHHHH
Q 001047 850 GDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKV 929 (1174)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1174)
+..+.+.+.. .+..+ .++.. +|+.++|.++|+.+ |++. +..+.++..++
T Consensus 717 -~~~~~~~~~~-------~~~~~--~~~~~-----------~~~~~~~~~~~~~~------~~~~----~~~~~~~~~~~ 765 (1010)
T 2xgj_A 717 -DIRASGQKET-------VGKSL--REVNR-----------RFPDGIPVLDPVKN------MKIE----DEDFLKLMKKI 765 (1010)
T ss_dssp -STTCSSSHHH-------HHHHH--HHHHH-----------HSSSCCCBCCTTTT------SCCC----CHHHHHHHHHH
T ss_pred -ccCChHHHHH-------HHHHH--HHHHH-----------hcccCCcccCchhh------hccc----cHHHHHHHHHH
Confidence 1222222111 12111 11111 23557899999764 5544 34556788999
Q ss_pred HHHHHHHHhccCcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHh-hccccHHHHhhHHHHHhhcCCccCCCCccChhh
Q 001047 930 ARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQ-IEPSGWKEFLRISNVIHETRALDINTQVIFPLG 1008 (1174)
Q Consensus 930 ~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~-~~~~~~~~f~~~~~VL~~lgyl~~~~~~vt~~G 1008 (1174)
+.|+++|.+||||.|++ +++|+++++++.+|+++++.|++++++ .+..+|++|+++++||++|||||.++ +||+||
T Consensus 766 ~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~-~v~~kG 842 (1010)
T 2xgj_A 766 DVLNTKLSSNPLTNSMR--LEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPND-IIELKG 842 (1010)
T ss_dssp HHHHHHHTTSHHHHSSS--HHHHHHHHHHC-CHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSBCTTC-CBCHHH
T ss_pred HHHHHHHHhCCcccCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCcCCCC-cccHHH
Confidence 99999999999999998 589999999999999999999999999 45557999999999999999999775 999999
Q ss_pred HHHHhhcCCchHHHHHHHHhcccCCCCHHhHHHHHhhhccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 001047 1009 ETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQE 1088 (1174)
Q Consensus 1009 r~a~~i~~~~eLllte~l~~g~~~~L~p~~laA~~s~~v~e~~~~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 1088 (1174)
|+||+|+++||||+|||||+|+|++|+|+||||+|||||||+ |.. ..+.+++.|.+++++|+++|++|+++|.
T Consensus 843 r~a~~i~~~~el~~~e~~~~g~~~~l~p~~~aa~~s~~v~~~---~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 915 (1010)
T 2xgj_A 843 RVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQE---RCK----EAPRLKPELAEPLKAMREIAAKIAKIMK 915 (1010)
T ss_dssp HHHHTCCSSCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHCCC---CCS----CCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccHHHHHHHHHcCccCCCCHHHHHHHHeeeEeec---CCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 542 2445679999999999999999999999
Q ss_pred HcCCCCCC-----CCChhHHHHHHHHhCCCCHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHHH
Q 001047 1089 KHGVEIPC-----CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDAS 1161 (1174)
Q Consensus 1089 ~~~~~~~~-----~~~~~l~~~v~~Wa~G~~~~~i~~~t~l~eGd~vR~~rrl~dll~Qi~~~~~~--~~~l~~~~~~a~ 1161 (1174)
+|+|+++. .|+|+||++||+||+|+||++||++|+++|||||||||||+|||+||++|+++ |++|++||++|+
T Consensus 916 ~~~~~~~~~~~~~~~~~~l~~~v~~Wa~g~~~~~i~~~t~~~eG~~vR~~~rl~ell~q~~~a~~~~g~~~l~~~~~~a~ 995 (1010)
T 2xgj_A 916 DSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVL 995 (1010)
T ss_dssp HTTCCCCHHHHHHTSCCTTHHHHHHHTTTCCHHHHTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HhCCCCChhHhcccCChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 99999993 59999999999999999999999999999999999999999999999999987 999999999999
Q ss_pred hccCCCCccc
Q 001047 1162 NVMDRPPISE 1171 (1174)
Q Consensus 1162 ~~i~R~~v~~ 1171 (1174)
++|+||||.-
T Consensus 996 ~~i~R~iv~~ 1005 (1010)
T 2xgj_A 996 KLIHRDIVSA 1005 (1010)
T ss_dssp HHHSCGGGGC
T ss_pred HhccCCeEec
Confidence 9999999975
No 3
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.8e-112 Score=1097.84 Aligned_cols=917 Identities=25% Similarity=0.375 Sum_probs=655.6
Q ss_pred HhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeE
Q 001047 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNV 231 (1174)
Q Consensus 152 l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v 231 (1174)
+...|+|+|+++|.++|+.+++|++++++||||||||++|++++...+..+.++||++|+++|++|+++++.+.|++..+
T Consensus 32 ~~~~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v 111 (997)
T 4a4z_A 32 PARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNI 111 (997)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCE
T ss_pred HHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeE
Confidence 45678999999999999999999999999999999999999999998889999999999999999999999998887889
Q ss_pred EEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 232 GLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 232 ~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
++++|+...+..++|+|+||++|.++++. ....+.++++|||||||++.+++|+..|++++..+++++|+|+||
T Consensus 112 ~~l~G~~~~~~~~~IlV~Tpe~L~~~l~~------~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLS 185 (997)
T 4a4z_A 112 GLITGDVQINPDANCLIMTTEILRSMLYR------GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLS 185 (997)
T ss_dssp EEECSSCEECTTSSEEEEEHHHHHHHHHH------TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEE
T ss_pred EEEeCCCccCCCCCEEEECHHHHHHHHHh------CchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEc
Confidence 99999999999999999999999999986 344678999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHhccc-CceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCc-------
Q 001047 312 ATVANADELAGWIGQIH-GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY------- 383 (1174)
Q Consensus 312 ATl~n~~~~~~~l~~~~-~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 383 (1174)
||++|+.+|++|++... +.+.++....||+|+.+++.....++++++..+......+...............
T Consensus 186 AT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 265 (997)
T 4a4z_A 186 ATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNG 265 (997)
T ss_dssp CCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--------------
T ss_pred CCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccc
Confidence 99999999999999765 5789999999999999988776666666665544433322111000000000000
Q ss_pred cCC----Cc-----cccc----cccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecC
Q 001047 384 KDG----GS-----RRRN----SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450 (1174)
Q Consensus 384 ~~~----~~-----~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~s 450 (1174)
... .. .+.. .........................+.............++..+...+..++||||+|
T Consensus 266 ~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~s 345 (997)
T 4a4z_A 266 RGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFS 345 (997)
T ss_dssp ---------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECC
Confidence 000 00 0000 0000000000000000000000000000000112234455566666777899999999
Q ss_pred HHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchh-----hHHhhhccceeEecCCCCHHHHHHHHHHHhcCC
Q 001047 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-----PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGL 525 (1174)
Q Consensus 451 r~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~-----~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ 525 (1174)
++.|+.++..|...++.+..+...+...++......+..... .+...+.+||++|||||++.+|+.+++.|++|.
T Consensus 346 r~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~ 425 (997)
T 4a4z_A 346 KKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGF 425 (997)
T ss_dssp HHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCC
Confidence 999999999999999999999999988888776666544322 456778899999999999999999999999999
Q ss_pred ceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeC-CCCCHHHHHHHhhC
Q 001047 526 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT-PYEGAEECCKLLFA 604 (1174)
Q Consensus 526 ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~-~~~~~~~~~~~~~~ 604 (1174)
++|||||+++++|||+|++++||.+..+|+|.++.|+|+.+|+||+|||||.|.+..|.||+++. ...+...+..++.+
T Consensus 426 ~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~~ 505 (997)
T 4a4z_A 426 IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMG 505 (997)
T ss_dssp CSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHHS
T ss_pred CcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999884 45567778889999
Q ss_pred CCcceeeeeccchhHHHHHhhhchhccccCchhHHHHHHhCCCHHHHHHHHHhhHHhhhccchhhHhHHHHHHHHHHHHH
Q 001047 605 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDV 684 (1174)
Q Consensus 605 ~~~pl~S~f~~~y~~vlnll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sf~~~~~~~~~~~~~~~l~~~~~~~~~ 684 (1174)
.+.++.|+|..+|||++|+|... . ..++.+++.+|.+|+.........+.+.++++++..
T Consensus 506 ~~~~l~s~~~~~ynm~l~ll~~~-----------------~---~~~~~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~~~ 565 (997)
T 4a4z_A 506 VPTRLQSQFRLTYNMILNLLRIE-----------------A---LRVEEMIKYSFSENAKETLQPEHEKQIKVLQEELQT 565 (997)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHC-----------------T---THHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcccccccccchHHHHHHHhhc-----------------c---ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999611 1 246899999999999877755555555555555443
Q ss_pred HHhhhchhhhhhHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcceEEEeeecCCCc
Q 001047 685 LTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGV 764 (1174)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 764 (1174)
+.... |. .| .+++.+|++++.++.+.++.... .. . .-...+..+.+|++ +.+ ++..+.
T Consensus 566 ~~~~~-c~---~c------~~~~~~~~~~r~~~~~~~~~~~~---~~----~-~~~~~~~~l~~gr~--v~~--~~~~~~ 623 (997)
T 4a4z_A 566 IEYKS-CE---IC------DNDIEKFLELMLAYKEATVNLMQ---EM----V-KSPSILHILKEGRL--VAF--RDPNDC 623 (997)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHH---HH----T-TSTTHHHHTCTTEE--EEE--ECTTCC
T ss_pred hhhhc-cc---cc------cccHHHHHHHHHHHHHHHHHHHH---HH----h-cCHhHHhhCCCCCE--EEE--ecCCCC
Confidence 33111 11 11 35889999999999987554421 11 0 01123555668886 333 232211
Q ss_pred EeecceEEecccCCCchhhhhcccccchhhhh--hhhccCCCCCCCCCCC-CCcccc---ccCCCCc--eeeecccceee
Q 001047 765 EHSVPAVYLGKFDSLDSSKLKNMASINDSFAL--NRLAQSNGDDYDTQDV-KPSYYV---ALGSDNT--WYTFTEKWIKT 836 (1174)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~--~~~~~~~~~~~ 836 (1174)
. .++|++....+.+. . .+.++.. +.....+.+ .+..+ .+.++. ..+..+. ...++.+.|..
T Consensus 624 ~--~~~~v~~~~~~~~~--~-----~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (997)
T 4a4z_A 624 L--KLGFVFKVSLKDAV--C-----VIMTFTKPYKLPNGEPNH--LIYFPKADGYRRRNFPKFQKTDFYMEEVPVTAIEV 692 (997)
T ss_dssp E--EEEEEEEEETTTTE--E-----EEEC-CCCCC------------CCTTCHHHHHHHCCCCCCCCCCEEEEECC-CCE
T ss_pred e--eEEEEEeeccCCCC--C-----ceEEEeccccccccCccc--cCCCcccccccccccCcccCCceEEEEeccchhhh
Confidence 1 25566543211110 0 1111111 000000000 00000 000000 0111222 23556677777
Q ss_pred EeecCCCCccccccCCCChhhhhhhhhhhhHHHHHhhhhhccCcccccCcccccccccCCCCcccccchhhhhhhccccc
Q 001047 837 VYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYH 916 (1174)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~ 916 (1174)
|+...+|... ..+... .....+.++. .+.... . . |.++|+.+ |++.
T Consensus 693 ~~~~~~~~~~--------~~~~~~----~~~~~~~~~~-~~~~~~-----------~-~-~~~~~~~~------~~~~-- 738 (997)
T 4a4z_A 693 ITKRKFAAPL--------GKVIKK----DVAALNEFNA-ETNNIL-----------D-G-KTLKEAIN------IEKQ-- 738 (997)
T ss_dssp EEEEECC-CH--------HHHHHT----CHHHHHHHHH-HHHHHH-----------H-S-CCCCCC--------------
T ss_pred hhcccccCCh--------HhhhcC----CHHHHHHHHH-HHHHHh-----------c-c-CCCCchhh------cccc--
Confidence 7765554210 111110 1111222211 111110 0 1 55666543 3332
Q ss_pred hhHHhHHHHHHHHHHHHHHHHhccCcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHhhHHHHHhhcCC
Q 001047 917 DAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRA 996 (1174)
Q Consensus 917 ~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~f~~~~~VL~~lgy 996 (1174)
...+.+...+++.|+.++.+||||.|++ +++|+++++++.+|+++++.|++++++.+.+++++|+++++||++|||
T Consensus 739 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vL~~l~~ 814 (997)
T 4a4z_A 739 --GLKIHQILLDRTNIRDEIFKLKSIKCPN--LSQHIVPKFKAHVIKKKIEELYHLMSDQNLSLLPDYEKRLAVLKDTEF 814 (997)
T ss_dssp --CCHHHHHHHHHHHHHHC--------------CCSHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHTTS
T ss_pred --cHHHHHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCC
Confidence 1233456678999999999999999998 589999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccChhhHHHHhhcCCchHHHHHHHHhcccCCCCHHhHHHHHhhhccccccccccCCCCCCCCCcHHHHHHHHHH
Q 001047 997 LDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 1076 (1174)
Q Consensus 997 l~~~~~~vt~~Gr~a~~i~~~~eLllte~l~~g~~~~L~p~~laA~~s~~v~e~~~~r~~~~~~~~~~~~~~l~~~~~~l 1076 (1174)
||.++ +||+|||+||+|++++||++|||||+|+|++|+|+||||||||||||+ |..++. .+.|++.|++++.++
T Consensus 815 ~~~~~-~v~~kgr~a~~i~~~~el~~te~~~~~~~~~l~~~~~~a~ls~~v~~~---~~~~~~--~~~~~~~l~~~~~~~ 888 (997)
T 4a4z_A 815 IDQNH-NVLLKGRVACEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVYEG---KTREEE--PPIVTPRLAKGKQRI 888 (997)
T ss_dssp BCTTC-CBCHHHHHHTTCCSSCHHHHHHHHHSSGGGGCCHHHHHHHHGGGSCCC---CCSSCC--CCCSSHHHHHHHHHH
T ss_pred cCCCC-cccHHhHHHhhhcCccHHHHHHHHHhCcccCCCHHHHHHHHhhhhccc---cCCCCC--CCCCCHHHHHHHHHH
Confidence 99875 999999999999999999999999999999999999999999999999 653222 346789999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCC-------CCChhHHHHHHHHhCCCCHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCCCC
Q 001047 1077 DEHRSSFLELQEKHGVEIPC-------CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV 1149 (1174)
Q Consensus 1077 ~~~~~~l~~~~~~~~~~~~~-------~~~~~l~~~v~~Wa~G~~~~~i~~~t~l~eGd~vR~~rrl~dll~Qi~~~~~~ 1149 (1174)
+++|++|++++.+|+++++. .|+|+||++||+||+|+||++||++|+++|||||||||||+||||||++|+.+
T Consensus 889 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~~~q~~~aa~~ 968 (997)
T 4a4z_A 889 EEIYKKMLCVFNTHQIPLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASII 968 (997)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHGGGSCTTTTHHHHHHHHHTCCHHHHHHTCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccchhhhccCCChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999863 49999999999999999999999999999999999999999999999999864
Q ss_pred --ChHHHHHHHHHHhccCCCCccc
Q 001047 1150 --DQRLQKNAVDASNVMDRPPISE 1171 (1174)
Q Consensus 1150 --~~~l~~~~~~a~~~i~R~~v~~ 1171 (1174)
|++|++||++|+++|+||||.-
T Consensus 969 ~g~~~l~~k~~~a~~~i~R~iv~~ 992 (997)
T 4a4z_A 969 IGNSTLHMKMSRAQELIKRDIVFA 992 (997)
T ss_dssp HTCHHHHHHHHHHHHHHSCGGGGC
T ss_pred cCCHHHHHHHHHHHHHhcCCeeec
Confidence 9999999999999999999974
No 4
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9.4e-51 Score=546.60 Aligned_cols=419 Identities=24% Similarity=0.362 Sum_probs=322.2
Q ss_pred CChHHHhhcCC--C-CCCHHHHHHHHHHHcC-CcEEEEccCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHH
Q 001047 147 IDVDELASIYD--F-RIDKFQRSSIEAFLRG-SSVVVSAPTSSGKTLIAEAAAVATVAN--QRRIFYTTPLKALSNQKFR 220 (1174)
Q Consensus 147 ~~~~~l~~~~~--~-~~~~~Q~~ai~~ll~g-~~vlv~apTGsGKTlv~~~~il~~l~~--g~rvlvl~PtraLa~Q~~~ 220 (1174)
.....++.+|. | .|+|+|.++++.++.+ +|++|+||||||||++|++||++.+.+ +.++||++|+|||++|+++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~ 990 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYM 990 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHH
Confidence 33455666664 3 3899999999999754 789999999999999999999998863 6799999999999999999
Q ss_pred HHHHHhCC---CeEEEEeCCCCCC----CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHH
Q 001047 221 EFRETFGD---NNVGLLTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTV 293 (1174)
Q Consensus 221 ~l~~~~g~---~~v~lltGd~~~~----~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~ 293 (1174)
+|.+.|+. .+|+.++|+...+ .+++|+|||||+|..++.+.. ....++++++||+||+|++.+ .+|..
T Consensus 991 ~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~----~~~~l~~v~lvViDE~H~l~d-~rg~~ 1065 (1724)
T 4f92_B 991 DWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK----QRKNVQNINLFVVDEVHLIGG-ENGPV 1065 (1724)
T ss_dssp HHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTT----TCHHHHSCSEEEECCGGGGGS-TTHHH
T ss_pred HHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcc----cccccceeeEEEeechhhcCC-CCCcc
Confidence 99998864 4799999987654 468999999999988876421 234578999999999999987 68999
Q ss_pred HHHHHHH-------CCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccch
Q 001047 294 WEEIIIY-------CPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366 (1174)
Q Consensus 294 ~e~ii~~-------l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~ 366 (1174)
|+.++.. +++++|+|+||||++|++++++|++.....+..+...+||+|+..++....... ...
T Consensus 1066 le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~---------~~~ 1136 (1724)
T 4f92_B 1066 LEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISH---------TQT 1136 (1724)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCS---------HHH
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCC---------chh
Confidence 9887653 467899999999999999999999987778889999999999998764321000 000
Q ss_pred hhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEE
Q 001047 367 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446 (1174)
Q Consensus 367 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IV 446 (1174)
.+ . .........+.. ....+|+||
T Consensus 1137 ~~----~--------------------------------------------------~~~~~~~~~i~~--~~~~~~~lV 1160 (1724)
T 4f92_B 1137 RL----L--------------------------------------------------SMAKPVYHAITK--HSPKKPVIV 1160 (1724)
T ss_dssp HH----H--------------------------------------------------TTHHHHHHHHHH--HCSSSCEEE
T ss_pred hh----h--------------------------------------------------hhcchHHHHHHH--hcCCCCeee
Confidence 00 0 000111122221 245679999
Q ss_pred EecCHHHHHHHHHHhhhcC--------CCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHH
Q 001047 447 FIFNRRGCDAAVQYLEDCN--------LLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 518 (1174)
Q Consensus 447 F~~sr~~~~~la~~L~~~~--------~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~ 518 (1174)
||+||+.|+.+|..|.... +.. .....+...+ .. .....+..++.+||++|||||++.+|..|+
T Consensus 1161 F~~sR~~~~~~A~~L~~~~~~~~~~~~~~~-~~~~~l~~~l----~~---~~d~~L~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1161 FVPSRKQTRLTAIDILTTCAADIQRQRFLH-CTEKDLIPYL----EK---LSDSTLKETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp EESSHHHHHHHHHHHHHHHHHTTCTTTTBC-SCHHHHHHHH----TT---CCCHHHHHHHHTTEEEECTTSCHHHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHHHhhccchhhhhc-ccHHHHHHHH----hh---cccHHHHHHHhCCEEEECCCCCHHHHHHHH
Confidence 9999999999888775211 111 0111111111 11 122456788899999999999999999999
Q ss_pred HHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCC--ccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHH
Q 001047 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG--RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE 596 (1174)
Q Consensus 519 ~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~--~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~ 596 (1174)
++|++|.++|||||+++++|||+|+++|||.++.+|+|.. ..|+++.+|+||+|||||+|.|..|.|++++.+.+ .
T Consensus 1233 ~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~--~ 1310 (1724)
T 4f92_B 1233 QLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSK--K 1310 (1724)
T ss_dssp HHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGG--H
T ss_pred HHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchH--H
Confidence 9999999999999999999999999999999999998753 46899999999999999999999999999997654 4
Q ss_pred HHHHHhhCCCcceeeeeccchhHHHHH-hhhchhccccCchhHHHHHHhCCCHHHHHHHHHhhHHh
Q 001047 597 ECCKLLFAGVEPLVSQFTASYGMVLNL-LAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN 661 (1174)
Q Consensus 597 ~~~~~~~~~~~pl~S~f~~~y~~vlnl-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sf~~ 661 (1174)
.+++.+...+.|++|++.......+|. +.. ..-.+..++.+++..+|..
T Consensus 1311 ~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~----------------~~i~~~~d~~~~l~~Tfl~ 1360 (1724)
T 4f92_B 1311 DFFKKFLYEPLPVESHLDHCMHDHFNAEIVT----------------KTIENKQDAVDYLTWTFLY 1360 (1724)
T ss_dssp HHHHHHTTSCBCCCCCGGGSCHHHHHHHHHT----------------TSCCBHHHHHHHHTTSSHH
T ss_pred HHHHHHhCCCCceeeecccchHHHHHHHHHh----------------cccCCHHHHHHHHHhhHHH
Confidence 567777788999999998765444432 221 1124566777788777753
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.1e-50 Score=541.63 Aligned_cols=403 Identities=24% Similarity=0.346 Sum_probs=303.4
Q ss_pred CCCHHHHHHHHHHH-cCCcEEEEccCCcchHHHHHHHHHHHHhc-----------CCeEEEEcccHHHHHHHHHHHHHHh
Q 001047 159 RIDKFQRSSIEAFL-RGSSVVVSAPTSSGKTLIAEAAAVATVAN-----------QRRIFYTTPLKALSNQKFREFRETF 226 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll-~g~~vlv~apTGsGKTlv~~~~il~~l~~-----------g~rvlvl~PtraLa~Q~~~~l~~~~ 226 (1174)
.|+++|.++++.++ .++|++|+||||||||++|+++|++.+.+ +.++||++|+|||++|++++|.+.|
T Consensus 79 ~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~ 158 (1724)
T 4f92_B 79 TLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRL 158 (1724)
T ss_dssp BCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHH
Confidence 59999999999877 56899999999999999999999998853 5689999999999999999999988
Q ss_pred CC--CeEEEEeCCCCCCC----CCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHH
Q 001047 227 GD--NNVGLLTGDSAINR----EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY 300 (1174)
Q Consensus 227 g~--~~v~lltGd~~~~~----~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~ 300 (1174)
+. .+|+.++||...+. .++|+|||||++..++.+.. ....++++++|||||+|++.| .||.+|+.++.+
T Consensus 159 ~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~----~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~r 233 (1724)
T 4f92_B 159 ATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGG----ERTYTQLVRLIILDEIHLLHD-DRGPVLEALVAR 233 (1724)
T ss_dssp TTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSST----THHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHH
T ss_pred hhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCc----cchhhcCcCEEEEecchhcCC-ccHHHHHHHHHH
Confidence 64 47999999987664 58999999999988776521 123578999999999999987 799999987653
Q ss_pred -------CCCCccEEEEccccCChHHHHHHHhcccC-ceeeecCCCCccccEEeecccccccccccccccccchhhhhhh
Q 001047 301 -------CPKEVQIICLSATVANADELAGWIGQIHG-KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 372 (1174)
Q Consensus 301 -------l~~~~qiI~LSATl~n~~~~~~~l~~~~~-~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 372 (1174)
+++++|+|+||||++|++++++||+.... .+.++.+++||+|+..++........ ....
T Consensus 234 l~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~---------~~~~---- 300 (1724)
T 4f92_B 234 AIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKA---------IKRF---- 300 (1724)
T ss_dssp HHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCH---------HHHH----
T ss_pred HHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcch---------hhhh----
Confidence 47789999999999999999999986433 46788899999999877643110000 0000
Q ss_pred hhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHH-HH-hCCCCCeEEEecC
Q 001047 373 LQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH-LR-SRDMLPAIWFIFN 450 (1174)
Q Consensus 373 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~-l~-~~~~~~~IVF~~s 450 (1174)
......+.. +. ....+++||||+|
T Consensus 301 ------------------------------------------------------~~~~~~~~~~v~~~~~~~~~LVF~~s 326 (1724)
T 4f92_B 301 ------------------------------------------------------QIMNEIVYEKIMEHAGKNQVLVFVHS 326 (1724)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHTTCCSSCCEEEECSS
T ss_pred ------------------------------------------------------HHHHHHHHHHHHHHhcCCcEEEECCC
Confidence 000001111 11 1245699999999
Q ss_pred HHHHHHHHHHhhhcC-------CCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhc
Q 001047 451 RRGCDAAVQYLEDCN-------LLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR 523 (1174)
Q Consensus 451 r~~~~~la~~L~~~~-------~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~ 523 (1174)
|+.|+.+|..|.+.. ..... ....... +...........+.+++.+||++|||||++.+|..||+.|++
T Consensus 327 R~~~~~~A~~l~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~ 402 (1724)
T 4f92_B 327 RKETGKTARAIRDMCLEKDTLGLFLRE-GSASTEV---LRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFAD 402 (1724)
T ss_dssp TTTTHHHHHHHHHHHHHTTSTTCCSSC-CTTCSSH---HHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhccchhhhccc-chhHHHH---HHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHC
Confidence 999999998876321 00000 0000000 011111122335678889999999999999999999999999
Q ss_pred CCceEEEechhhhhcCCcCCceEEEecccccCCCC--ccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHH
Q 001047 524 GLVKVVFATETLAAGINMPARTAVLSSLSKRTASG--RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKL 601 (1174)
Q Consensus 524 G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~--~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~ 601 (1174)
|.++|||||+|+++|||+|++++||.++..|++.. ..|+|+.+|+||+|||||+|.|..|.+|+++++.+. ..+..
T Consensus 403 G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~-~~~~~- 480 (1724)
T 4f92_B 403 KHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGEL-QYYLS- 480 (1724)
T ss_dssp TCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTC-CHHHH-
T ss_pred CCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhH-HHHHH-
Confidence 99999999999999999999999999998888653 468999999999999999999999999999887652 23444
Q ss_pred hhCCCcceeeeeccchhHHHHHhhhchhccccCchhHHHH
Q 001047 602 LFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKA 641 (1174)
Q Consensus 602 ~~~~~~pl~S~f~~~y~~vlnll~~~~~~~~~~~~~~~~~ 641 (1174)
+.....|++|+|.......|| +......+.+..+++++
T Consensus 481 ll~~~~pieS~l~~~l~d~L~--aeI~~g~i~~~~~a~~~ 518 (1724)
T 4f92_B 481 LLNQQLPIESQMVSKLPDMLN--AEIVLGNVQNAKDAVNW 518 (1724)
T ss_dssp HTTTCSCCCCCTTTTHHHHHH--HHHHHTSCCBHHHHHHH
T ss_pred HHcCCCcchhhccccHHHHHH--HHHHHhhcCCHHHHHHH
Confidence 456678999999876544433 22223344444444444
No 6
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4.1e-48 Score=491.99 Aligned_cols=435 Identities=30% Similarity=0.395 Sum_probs=331.4
Q ss_pred HHhccCCcCChHHHhhcCCCCCCHHHHHHHHH-HHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHH
Q 001047 139 VKEFGNEMIDVDELASIYDFRIDKFQRSSIEA-FLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSN 216 (1174)
Q Consensus 139 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~-ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~ 216 (1174)
|.++++++...+.++......|+|+|.++++. +..+++++++||||||||++|.+++++.+. ++.+++|++|+++|++
T Consensus 3 f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~ 82 (720)
T 2zj8_A 3 VDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAE 82 (720)
T ss_dssp GGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHH
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHH
Confidence 45566666666667664444899999999998 889999999999999999999999998776 6889999999999999
Q ss_pred HHHHHHHHHhC-CCeEEEEeCCCCCCC----CCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcH
Q 001047 217 QKFREFRETFG-DNNVGLLTGDSAINR----EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRG 291 (1174)
Q Consensus 217 Q~~~~l~~~~g-~~~v~lltGd~~~~~----~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g 291 (1174)
|++++++.+.. +..++.++|+...+. +++|+|+|||+|..++.. ...++.++++|||||||++.+..|+
T Consensus 83 q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~------~~~~l~~~~~vIiDE~H~l~~~~r~ 156 (720)
T 2zj8_A 83 EKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRH------GSSWIKDVKILVADEIHLIGSRDRG 156 (720)
T ss_dssp HHHHHTGGGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHH------TCTTGGGEEEEEEETGGGGGCTTTH
T ss_pred HHHHHHHHHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHc------ChhhhhcCCEEEEECCcccCCCccc
Confidence 99999964211 367999999876654 789999999999998876 3445789999999999999998999
Q ss_pred HHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhh
Q 001047 292 TVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 371 (1174)
Q Consensus 292 ~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 371 (1174)
..++.++..++.+.|+|+||||++|++++++|++ +..+...+||+|+..++...... .
T Consensus 157 ~~~~~ll~~l~~~~~ii~lSATl~n~~~~~~~l~-----~~~~~~~~rp~~l~~~~~~~~~~-----------------~ 214 (720)
T 2zj8_A 157 ATLEVILAHMLGKAQIIGLSATIGNPEELAEWLN-----AELIVSDWRPVKLRRGVFYQGFV-----------------T 214 (720)
T ss_dssp HHHHHHHHHHBTTBEEEEEECCCSCHHHHHHHTT-----EEEEECCCCSSEEEEEEEETTEE-----------------E
T ss_pred HHHHHHHHHhhcCCeEEEEcCCcCCHHHHHHHhC-----CcccCCCCCCCcceEEEEeCCee-----------------e
Confidence 9999999888778999999999999999999996 45678889999988654321100 0
Q ss_pred hhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCH
Q 001047 372 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 451 (1174)
Q Consensus 372 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr 451 (1174)
+. ... . .........+..+.. ..+++||||+++
T Consensus 215 ~~-----------~~~-~----------------------------------~~~~~~~~~~~~~~~-~~~~~LVF~~sr 247 (720)
T 2zj8_A 215 WE-----------DGS-I----------------------------------DRFSSWEELVYDAIR-KKKGALIFVNMR 247 (720)
T ss_dssp ET-----------TSC-E----------------------------------EECSSTTHHHHHHHH-TTCCEEEECSCH
T ss_pred cc-----------ccc-h----------------------------------hhhhHHHHHHHHHHh-CCCCEEEEecCH
Confidence 00 000 0 000001122222222 347999999999
Q ss_pred HHHHHHHHHhhhc--CCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEE
Q 001047 452 RGCDAAVQYLEDC--NLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVV 529 (1174)
Q Consensus 452 ~~~~~la~~L~~~--~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVL 529 (1174)
+.|+.++..|... .+....+...+....+.+. .......+...+..|+++|||+|++.+|..+++.|++|.++||
T Consensus 248 ~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vl 324 (720)
T 2zj8_A 248 RKAERVALELSKKVKSLLTKPEIRALNELADSLE---ENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAV 324 (720)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSC---SCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEE
T ss_pred HHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHh---cccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEE
Confidence 9999999998742 2333333333222222210 1111223566778899999999999999999999999999999
Q ss_pred EechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHH-HHhhCCCcc
Q 001047 530 FATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC-KLLFAGVEP 608 (1174)
Q Consensus 530 VAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~-~~~~~~~~p 608 (1174)
|||+++++|||+|++++||+++.+|++.+..|.|..+|+||+|||||.|.|..|.||+++++.+ ...++ +++.+.++|
T Consensus 325 vaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~-~~~~~~~~~~~~~~~ 403 (720)
T 2zj8_A 325 VATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD-PREVMNHYIFGKPEK 403 (720)
T ss_dssp EECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC-HHHHHHHHTTSCCCC
T ss_pred EECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc-HHHHHHHHhcCCCCC
Confidence 9999999999999999999988888855557999999999999999999999999999998765 44434 577788999
Q ss_pred eeeeeccchhHHHHHhhhchhccccCchhHHHHHHhCCCHHHHHHHHHhhHHhhhcc
Q 001047 609 LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGS 665 (1174)
Q Consensus 609 l~S~f~~~y~~vlnll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sf~~~~~~ 665 (1174)
++|++....++..++++.... ....+.+++.+++..+|..++..
T Consensus 404 i~s~l~~~~~l~~~ll~~i~~-------------~~~~~~~d~~~~l~~~~~~~~~~ 447 (720)
T 2zj8_A 404 LFSQLSNESNLRSQVLALIAT-------------FGYSTVEEILKFISNTFYAYQRK 447 (720)
T ss_dssp CCCCTTCHHHHHHHHHHHHHH-------------SCCCSHHHHHHHHHTSHHHHHCS
T ss_pred cEeecCchhhHHHHHHHHHHh-------------CCCCCHHHHHHHHHhChHHHhcc
Confidence 999987654444444441111 11245677888899999877654
No 7
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.7e-48 Score=492.58 Aligned_cols=443 Identities=27% Similarity=0.381 Sum_probs=322.6
Q ss_pred HHhccCCcCChHHHhhcCCCCCCHHHHHHHHH-HHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHH
Q 001047 139 VKEFGNEMIDVDELASIYDFRIDKFQRSSIEA-FLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSN 216 (1174)
Q Consensus 139 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~-ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~ 216 (1174)
|.++++++...+.++......|+|+|.++++. +.++++++|+||||||||++|.+++++.+. ++.+++|++|+++|+.
T Consensus 10 ~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~ 89 (715)
T 2va8_A 10 IEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTN 89 (715)
T ss_dssp GGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHH
T ss_pred HHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHH
Confidence 55566666666666664444899999999999 788999999999999999999999998876 7889999999999999
Q ss_pred HHHHHHHHHhC--CCeEEEEeCCCCCCC----CCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCc
Q 001047 217 QKFREFRETFG--DNNVGLLTGDSAINR----EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISR 290 (1174)
Q Consensus 217 Q~~~~l~~~~g--~~~v~lltGd~~~~~----~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~ 290 (1174)
|++++++. ++ +..++.++|+..... +++|+|||||+|..++.+ ...++.++++|||||||++.+..+
T Consensus 90 q~~~~~~~-~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~------~~~~l~~~~~vIiDE~H~l~~~~~ 162 (715)
T 2va8_A 90 EKYLTFKD-WELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRH------RPEWLNEVNYFVLDELHYLNDPER 162 (715)
T ss_dssp HHHHHHGG-GGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHH------CCGGGGGEEEEEECSGGGGGCTTT
T ss_pred HHHHHHHH-hhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhC------ChhHhhccCEEEEechhhcCCccc
Confidence 99999953 32 367999999876554 689999999999998876 334578999999999999998899
Q ss_pred HHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhh
Q 001047 291 GTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL 370 (1174)
Q Consensus 291 g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 370 (1174)
+..++.++..++ +.|+|+||||++|++++++|++ +..+...+||+|+..++....... . ....
T Consensus 163 ~~~l~~i~~~~~-~~~ii~lSATl~n~~~~~~~l~-----~~~~~~~~r~~~l~~~~~~~~~~~---------~--~~~~ 225 (715)
T 2va8_A 163 GPVVESVTIRAK-RRNLLALSATISNYKQIAKWLG-----AEPVATNWRPVPLIEGVIYPERKK---------K--EYNV 225 (715)
T ss_dssp HHHHHHHHHHHH-TSEEEEEESCCTTHHHHHHHHT-----CEEEECCCCSSCEEEEEEEECSST---------T--EEEE
T ss_pred chHHHHHHHhcc-cCcEEEEcCCCCCHHHHHHHhC-----CCccCCCCCCCCceEEEEecCCcc---------c--ceee
Confidence 999999988776 7999999999999999999997 567888999999886653211000 0 0000
Q ss_pred hhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecC
Q 001047 371 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 450 (1174)
Q Consensus 371 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~s 450 (1174)
.+. .... ..+ .........+..+.. ..+++||||++
T Consensus 226 ~~~-----------~~~~----------------------~~~----------~~~~~~~~~~~~~~~-~~~~~LVF~~s 261 (715)
T 2va8_A 226 IFK-----------DNTT----------------------KKV----------HGDDAIIAYTLDSLS-KNGQVLVFRNS 261 (715)
T ss_dssp EET-----------TSCE----------------------EEE----------ESSSHHHHHHHHHHT-TTCCEEEECSS
T ss_pred ecC-----------cchh----------------------hhc----------ccchHHHHHHHHHHh-cCCCEEEEECC
Confidence 000 0000 000 001122333333333 45799999999
Q ss_pred HHHHHHHHHHhhhcC---CCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCce
Q 001047 451 RRGCDAAVQYLEDCN---LLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVK 527 (1174)
Q Consensus 451 r~~~~~la~~L~~~~---~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ik 527 (1174)
++.|+.++..|.... +....+...+....+.+ ...+......+...+..+|++|||+|++.+|..+++.|++|.++
T Consensus 262 ~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~ 340 (715)
T 2va8_A 262 RKMAESTALKIANYMNFVSLDENALSEILKQLDDI-EEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIK 340 (715)
T ss_dssp HHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTC-CSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHh-hhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCe
Confidence 999999999998542 33444444443333322 11112222345567778999999999999999999999999999
Q ss_pred EEEechhhhhcCCcCCceEEEecccccC---CCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHH-HHhh
Q 001047 528 VVFATETLAAGINMPARTAVLSSLSKRT---ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC-KLLF 603 (1174)
Q Consensus 528 VLVAT~tla~GIDiP~v~vVI~~~~k~~---~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~-~~~~ 603 (1174)
|||||+++++|||+|++++||++..+|+ +.+..|.|..+|+||+|||||.|.|..|.||+++++.+....++ +++.
T Consensus 341 vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~ 420 (715)
T 2va8_A 341 VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVL 420 (715)
T ss_dssp EEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTS
T ss_pred EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHc
Confidence 9999999999999999999999877777 44568999999999999999999999999999998766444444 4667
Q ss_pred CCCcceeeeeccchhHHHHHhhhchhccccCchhHHHHHHhCCCHHHHHHHHHhhHHhhh
Q 001047 604 AGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 663 (1174)
Q Consensus 604 ~~~~pl~S~f~~~y~~vlnll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sf~~~~ 663 (1174)
+.++|++|.+.....+..++++.... ....+.+++..++..+|...+
T Consensus 421 ~~~e~~~s~l~~~~~l~~~~l~~~~~-------------g~~~~~~~~~~~l~~~~~~~~ 467 (715)
T 2va8_A 421 SDVEPIESKLGSERAFYTFLLGILSA-------------EGNLSEKQLENFAYESLLAKQ 467 (715)
T ss_dssp SCCCCCCCSCCSHHHHHHHHHHHHHH-------------HCSEEHHHHHHHHTTSSSCHH
T ss_pred CCCCCceecCCchhHHHHHHHHHHhc-------------cccCCHHHHHHHHHhhHHHhh
Confidence 88999999997754444344431111 112345677777777776443
No 8
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=4.1e-48 Score=490.57 Aligned_cols=419 Identities=27% Similarity=0.382 Sum_probs=317.5
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC--
Q 001047 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG-- 227 (1174)
Q Consensus 150 ~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g-- 227 (1174)
+.++......|+|+|.++++.+.++++++++||||||||++|.+++++.+.++++++|++|+++|+.|++++++. ++
T Consensus 16 ~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~-~~~~ 94 (702)
T 2p6r_A 16 GILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKK-WEKI 94 (702)
T ss_dssp HHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTT-TTTT
T ss_pred HHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHH-HHhc
Confidence 344443223799999999999999999999999999999999999999888899999999999999999999953 33
Q ss_pred CCeEEEEeCCCCCCC----CCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC--
Q 001047 228 DNNVGLLTGDSAINR----EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC-- 301 (1174)
Q Consensus 228 ~~~v~lltGd~~~~~----~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l-- 301 (1174)
+..++.++|+..... +++|+|+|||+|..++.+ ...++.++++||+||||++.+..|+..++.++..+
T Consensus 95 g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~------~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~ 168 (702)
T 2p6r_A 95 GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRN------RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR 168 (702)
T ss_dssp TCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHT------TCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHc------ChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHh
Confidence 357999999876543 789999999999998876 33457899999999999999989999999887655
Q ss_pred -CCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccC
Q 001047 302 -PKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 380 (1174)
Q Consensus 302 -~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 380 (1174)
+++.|+|+||||++|++++++|++ +.++...+||+|+..++....... ..+.... .
T Consensus 169 ~~~~~~ii~lSATl~n~~~~~~~l~-----~~~~~~~~r~~~l~~~~~~~~~~~-~~~~~~~-~---------------- 225 (702)
T 2p6r_A 169 MNKALRVIGLSATAPNVTEIAEWLD-----ADYYVSDWRPVPLVEGVLCEGTLE-LFDGAFS-T---------------- 225 (702)
T ss_dssp HCTTCEEEEEECCCTTHHHHHHHTT-----CEEEECCCCSSCEEEEEECSSEEE-EEETTEE-E----------------
T ss_pred cCcCceEEEECCCcCCHHHHHHHhC-----CCcccCCCCCccceEEEeeCCeee-ccCcchh-h----------------
Confidence 578999999999999999999997 567888999999887653211000 0000000 0
Q ss_pred CCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHH
Q 001047 381 KPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQY 460 (1174)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~ 460 (1174)
...-.....+..... ..+++||||++++.|+.++..
T Consensus 226 -------------------------------------------~~~~~~~~~~~~~~~-~~~~~LVF~~s~~~~~~~a~~ 261 (702)
T 2p6r_A 226 -------------------------------------------SRRVKFEELVEECVA-ENGGVLVFESTRRGAEKTAVK 261 (702)
T ss_dssp -------------------------------------------EEECCHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHH
T ss_pred -------------------------------------------hhhhhHHHHHHHHHh-cCCCEEEEcCCHHHHHHHHHH
Confidence 000001222333332 457999999999999999998
Q ss_pred hhhc--CCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhc
Q 001047 461 LEDC--NLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAG 538 (1174)
Q Consensus 461 L~~~--~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~G 538 (1174)
|... .+....+ ..+.+....+......+...+..++++|||+|++.+|..+++.|++|.++|||||+++++|
T Consensus 262 L~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~G 335 (702)
T 2p6r_A 262 LSAITAKYVENEG------LEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAG 335 (702)
T ss_dssp HHHHHHTTCCCSS------HHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSS
T ss_pred HHHHHHhhcChHH------HHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhcc
Confidence 8742 1111111 1111111222222334556777899999999999999999999999999999999999999
Q ss_pred CCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHH-HHhhCCCcceeeeeccch
Q 001047 539 INMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC-KLLFAGVEPLVSQFTASY 617 (1174)
Q Consensus 539 IDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~-~~~~~~~~pl~S~f~~~y 617 (1174)
||+|++++||++..+|+| +..|.|..+|+||+|||||.|.|..|.||+++++.+ ...+. +++.+.++|++|.+....
T Consensus 336 idip~~~~VI~~~~~yd~-~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~-~~~~~~~~l~~~~e~~~s~l~~~~ 413 (702)
T 2p6r_A 336 VNLPARRVIVRSLYRFDG-YSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD-REIAVKRYIFGEPERITSKLGVET 413 (702)
T ss_dssp SCCCBSEEEECCSEEESS-SEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG-HHHHHHTTTSSCCCCCCCCCCSHH
T ss_pred CCCCceEEEEcCceeeCC-CCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc-HHHHHHHHhcCCCCCceeecCcch
Confidence 999999999998888884 368999999999999999999999999999998765 44444 356788999999997644
Q ss_pred hHHHHHhhhchhccccCchhHHHHHHhCCCHHHHHHHHHhhHHhhh
Q 001047 618 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 663 (1174)
Q Consensus 618 ~~vlnll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sf~~~~ 663 (1174)
.+..++++.... ....+.+++..++..+|...+
T Consensus 414 ~l~~~~l~~~~~-------------g~~~~~~~~~~~l~~t~~~~~ 446 (702)
T 2p6r_A 414 HLRFHSLSIICD-------------GYAKTLEELEDFFADTFFFKQ 446 (702)
T ss_dssp HHHHHHHHHHHH-------------TSCSSHHHHHHHHHTSTTHHH
T ss_pred hHHHHHHHHHHc-------------CCCCCHHHHHHHHHhhhHHHh
Confidence 444444431111 112456778888888887654
No 9
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.3e-44 Score=428.16 Aligned_cols=331 Identities=19% Similarity=0.233 Sum_probs=256.9
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc--------CCeEEEEc
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN--------QRRIFYTT 209 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~--------g~rvlvl~ 209 (1174)
.|.++++.+...+.+.......|+|+|.++++.+++|++++++||||||||++|++|++..+.. +.++||++
T Consensus 57 ~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~ 136 (434)
T 2db3_A 57 HFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVS 136 (434)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEe
Confidence 3445566666666777766667999999999999999999999999999999999999988753 45899999
Q ss_pred ccHHHHHHHHHHHHHHhC--CCeEEEEeCCCCC-------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEc
Q 001047 210 PLKALSNQKFREFRETFG--DNNVGLLTGDSAI-------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLD 280 (1174)
Q Consensus 210 PtraLa~Q~~~~l~~~~g--~~~v~lltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiD 280 (1174)
||++|+.|+++++.+... ...++.++|+... ..+++|+|+||++|.+++.+ ....+.++++||+|
T Consensus 137 PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~------~~~~l~~~~~lVlD 210 (434)
T 2db3_A 137 PTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR------TFITFEDTRFVVLD 210 (434)
T ss_dssp SSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT------TSCCCTTCCEEEEE
T ss_pred cCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh------CCcccccCCeEEEc
Confidence 999999999999998653 2467788887653 35789999999999999876 34567899999999
Q ss_pred cccccccCCcHHHHHHHHHHC--CCCccEEEEccccCChHHHHHHHhcccCceeeecCC-CC--ccccEEeecccccccc
Q 001047 281 EVHYLSDISRGTVWEEIIIYC--PKEVQIICLSATVANADELAGWIGQIHGKTELITSS-RR--PVPLTWYFSTKTALLP 355 (1174)
Q Consensus 281 EaH~l~d~~~g~~~e~ii~~l--~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~-~r--pvpl~~~~~~~~~~~~ 355 (1174)
|||+|.+++|...+..++..+ +++.|+++||||+++ .+..+..........+... .. ...+.+.+..
T Consensus 211 Eah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~--~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~------ 282 (434)
T 2db3_A 211 EADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPE--EIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYE------ 282 (434)
T ss_dssp THHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCH--HHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEE------
T ss_pred cHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCH--HHHHHHHHhccCCEEEEeccccccccccceEEEE------
Confidence 999999999999999998875 678999999999973 3333333211111111000 00 0000000000
Q ss_pred cccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHH
Q 001047 356 LLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH 435 (1174)
Q Consensus 356 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 435 (1174)
.. .......++..
T Consensus 283 ---------------------------------------------------------~~----------~~~k~~~l~~~ 295 (434)
T 2db3_A 283 ---------------------------------------------------------VN----------KYAKRSKLIEI 295 (434)
T ss_dssp ---------------------------------------------------------CC----------GGGHHHHHHHH
T ss_pred ---------------------------------------------------------eC----------cHHHHHHHHHH
Confidence 00 00011112222
Q ss_pred HHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHH
Q 001047 436 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKS 515 (1174)
Q Consensus 436 l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~ 515 (1174)
+... ..++||||++++.|+.++..|...++ .+..+||++++.+|+
T Consensus 296 l~~~-~~~~lVF~~t~~~a~~l~~~L~~~~~----------------------------------~~~~lhg~~~~~~R~ 340 (434)
T 2db3_A 296 LSEQ-ADGTIVFVETKRGADFLASFLSEKEF----------------------------------PTTSIHGDRLQSQRE 340 (434)
T ss_dssp HHHC-CTTEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEEESTTSCHHHHH
T ss_pred HHhC-CCCEEEEEeCcHHHHHHHHHHHhCCC----------------------------------CEEEEeCCCCHHHHH
Confidence 3333 34599999999999999999987665 688999999999999
Q ss_pred HHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCC
Q 001047 516 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 594 (1174)
Q Consensus 516 ~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~ 594 (1174)
.+++.|++|.++|||||+++++|||+|++++||+ ++.|.+..+|+||+|||||.| ..|.+++++++.++
T Consensus 341 ~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~--------~d~p~~~~~y~qriGR~gR~g--~~G~a~~~~~~~~~ 409 (434)
T 2db3_A 341 QALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN--------YDMPSKIDDYVHRIGRTGRVG--NNGRATSFFDPEKD 409 (434)
T ss_dssp HHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE--------SSCCSSHHHHHHHHTTSSCTT--CCEEEEEEECTTTC
T ss_pred HHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE--------ECCCCCHHHHHHHhcccccCC--CCCEEEEEEecccc
Confidence 9999999999999999999999999999999999 899999999999999999999 78999999986554
No 10
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.5e-42 Score=406.21 Aligned_cols=329 Identities=18% Similarity=0.182 Sum_probs=252.0
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc----------------
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN---------------- 201 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~---------------- 201 (1174)
.|.++++.+...+.+.......|+|+|.++++.++.|++++++||||||||++|++|++..+..
T Consensus 16 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (417)
T 2i4i_A 16 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRY 95 (417)
T ss_dssp SGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTT
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccccc
Confidence 3555666666777777777778999999999999999999999999999999999999887642
Q ss_pred -----CCeEEEEcccHHHHHHHHHHHHHHhC--CCeEEEEeCCCCC-------CCCCcEEEEcHHHHHHHHhcccccccC
Q 001047 202 -----QRRIFYTTPLKALSNQKFREFRETFG--DNNVGLLTGDSAI-------NREAQILIMTTEILRNMLYQSVGMVSS 267 (1174)
Q Consensus 202 -----g~rvlvl~PtraLa~Q~~~~l~~~~g--~~~v~lltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~~~~ 267 (1174)
+.++||++||++|+.|+++++.+... +..++.++|+... ..+++|+|+||++|.+++.. .
T Consensus 96 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~------~ 169 (417)
T 2i4i_A 96 GRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER------G 169 (417)
T ss_dssp BSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT------T
T ss_pred ccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc------C
Confidence 25799999999999999999998654 3568888887653 35789999999999998876 3
Q ss_pred CCCCCceeEEEEccccccccCCcHHHHHHHHHH--CCC--CccEEEEccccCCh-HHHH-HHHhcccCceeeecCCC--C
Q 001047 268 ESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY--CPK--EVQIICLSATVANA-DELA-GWIGQIHGKTELITSSR--R 339 (1174)
Q Consensus 268 ~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~--l~~--~~qiI~LSATl~n~-~~~~-~~l~~~~~~~~~i~~~~--r 339 (1174)
...+.++++||+||||++.+.++...+..++.. ++. ..|+++||||+++. ..+. .|+. .+..+..... .
T Consensus 170 ~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 246 (417)
T 2i4i_A 170 KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLD---EYIFLAVGRVGST 246 (417)
T ss_dssp SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCS---SCEEEEEC----C
T ss_pred CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcC---CCEEEEeCCCCCC
Confidence 445788999999999999998999999888774 333 68999999999742 2232 2222 1111110000 0
Q ss_pred ccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhh
Q 001047 340 PVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN 419 (1174)
Q Consensus 340 pvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (1174)
+..+.+.+.. . .
T Consensus 247 ~~~i~~~~~~-----------------------~----------------------------------------~----- 258 (417)
T 2i4i_A 247 SENITQKVVW-----------------------V----------------------------------------E----- 258 (417)
T ss_dssp CSSEEEEEEE-----------------------C----------------------------------------C-----
T ss_pred ccCceEEEEE-----------------------e----------------------------------------c-----
Confidence 0000000000 0 0
Q ss_pred hhhhcCchhHHHHHHHHHh-C-CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhh
Q 001047 420 AIRRSQVPQVIDTLWHLRS-R-DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG 497 (1174)
Q Consensus 420 ~~~~~~~~~~~~~l~~l~~-~-~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~ 497 (1174)
.......+..+.. . ...++||||++++.|+.++..|...++
T Consensus 259 ------~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~------------------------------- 301 (417)
T 2i4i_A 259 ------ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY------------------------------- 301 (417)
T ss_dssp ------GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTC-------------------------------
T ss_pred ------cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCC-------------------------------
Confidence 0011112222222 2 456899999999999999999986654
Q ss_pred hccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCC
Q 001047 498 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRR 577 (1174)
Q Consensus 498 L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~ 577 (1174)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ++.|.+..+|+||+|||||.
T Consensus 302 ---~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~--------~~~p~s~~~~~Qr~GR~gR~ 370 (417)
T 2i4i_A 302 ---ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN--------FDLPSDIEEYVHRIGRTGRV 370 (417)
T ss_dssp ---CEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEE--------SSCCSSHHHHHHHHTTBCC-
T ss_pred ---CeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------EcCCCCHHHHHHhcCccccC
Confidence 6899999999999999999999999999999999999999999999999 88999999999999999999
Q ss_pred CCCCccEEEEEeCCCC
Q 001047 578 GIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 578 G~d~~G~~ill~~~~~ 593 (1174)
| ..|.|++++++.+
T Consensus 371 g--~~g~~~~~~~~~~ 384 (417)
T 2i4i_A 371 G--NLGLATSFFNERN 384 (417)
T ss_dssp ---CCEEEEEEECGGG
T ss_pred C--CCceEEEEEcccc
Confidence 9 6799999987654
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.5e-41 Score=400.39 Aligned_cols=331 Identities=19% Similarity=0.248 Sum_probs=256.7
Q ss_pred HHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcC--CcEEEEccCCcchHHHHHHHHHHHHh---cCCeEEEEccc
Q 001047 137 NEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRG--SSVVVSAPTSSGKTLIAEAAAVATVA---NQRRIFYTTPL 211 (1174)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g--~~vlv~apTGsGKTlv~~~~il~~l~---~g~rvlvl~Pt 211 (1174)
..|.++++.+...+.+.......|+|+|.++++.++.+ ++++++||||+|||++|+++++..+. .+.++||++|+
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 84 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPS 84 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCC
Confidence 45667777777777888877778999999999999998 89999999999999999999998875 46699999999
Q ss_pred HHHHHHHHHHHHHHhC--CCeEEEEeCCCCC---CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 212 KALSNQKFREFRETFG--DNNVGLLTGDSAI---NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 212 raLa~Q~~~~l~~~~g--~~~v~lltGd~~~---~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
++|+.|+++.+.+... ...++...|+... ..+++|+|+||++|.+++.. ....+.++++||+||||++.
T Consensus 85 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~------~~~~~~~~~~iIiDEah~~~ 158 (395)
T 3pey_A 85 RELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRR------KLMQLQKIKIFVLDEADNML 158 (395)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHT------TCBCCTTCCEEEEETHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHc------CCcccccCCEEEEEChhhhc
Confidence 9999999999998543 3456777766532 23689999999999998875 34457889999999999998
Q ss_pred c-CCcHHHHHHHHHHCCCCccEEEEccccCCh-HHHHHHHhcccCceeeecCCCCcc---ccEEeecccccccccccccc
Q 001047 287 D-ISRGTVWEEIIIYCPKEVQIICLSATVANA-DELAGWIGQIHGKTELITSSRRPV---PLTWYFSTKTALLPLLDEKG 361 (1174)
Q Consensus 287 d-~~~g~~~e~ii~~l~~~~qiI~LSATl~n~-~~~~~~l~~~~~~~~~i~~~~rpv---pl~~~~~~~~~~~~~~~~~~ 361 (1174)
+ ..+...+..+...++++.|+++||||+++. ..+..++.. ....+....... .+...+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------------ 223 (395)
T 3pey_A 159 DQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVP---NANTLELQTNEVNVDAIKQLYMD------------ 223 (395)
T ss_dssp HSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSC---SCEEECCCGGGCSCTTEEEEEEE------------
T ss_pred CccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCC---CCeEEEccccccccccccEEEEE------------
Confidence 7 578888888888899999999999999753 333333321 111111110000 00000000
Q ss_pred cccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHH-hCC
Q 001047 362 KHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR-SRD 440 (1174)
Q Consensus 362 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~-~~~ 440 (1174)
. .........+..+. ...
T Consensus 224 --~-----------------------------------------------------------~~~~~~~~~l~~~~~~~~ 242 (395)
T 3pey_A 224 --C-----------------------------------------------------------KNEADKFDVLTELYGLMT 242 (395)
T ss_dssp --C-----------------------------------------------------------SSHHHHHHHHHHHHTTTT
T ss_pred --c-----------------------------------------------------------CchHHHHHHHHHHHHhcc
Confidence 0 00011122233332 234
Q ss_pred CCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHH
Q 001047 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 520 (1174)
Q Consensus 441 ~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~ 520 (1174)
.+++||||++++.|+.++..|...++ .+..+||+|++.+|..+++.
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~~~----------------------------------~~~~~~~~~~~~~r~~~~~~ 288 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSEGH----------------------------------EVSILHGDLQTQERDRLIDD 288 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTC----------------------------------CCEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCC----------------------------------cEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999986654 68999999999999999999
Q ss_pred HhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCcccc------CHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL------TSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 521 F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~------s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
|++|.++|||||+++++|||+|++++||+ ++.|. ++.+|+||+|||||.| ..|.+++++++.+
T Consensus 289 f~~g~~~vlv~T~~~~~Gidip~~~~Vi~--------~~~p~~~~~~~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~ 357 (395)
T 3pey_A 289 FREGRSKVLITTNVLARGIDIPTVSMVVN--------YDLPTLANGQADPATYIHRIGRTGRFG--RKGVAISFVHDKN 357 (395)
T ss_dssp HHTTSCCEEEECGGGSSSCCCTTEEEEEE--------SSCCBCTTSSBCHHHHHHHHTTSSCTT--CCEEEEEEECSHH
T ss_pred HHCCCCCEEEECChhhcCCCcccCCEEEE--------cCCCCCCcCCCCHHHhhHhccccccCC--CCceEEEEEechH
Confidence 99999999999999999999999999999 66666 9999999999999999 7899999987644
No 12
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.4e-41 Score=401.38 Aligned_cols=331 Identities=18% Similarity=0.178 Sum_probs=253.5
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcC--CcEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEcccH
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRG--SSVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPLK 212 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g--~~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~Ptr 212 (1174)
.|..+++.+...+.+.......|+|+|.++++.++.+ ++++++||||+|||++|++|++..+.. +.++||++||+
T Consensus 26 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 105 (412)
T 3fht_A 26 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 105 (412)
T ss_dssp CTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCH
Confidence 4566677777777777777778999999999999987 899999999999999999999988764 34899999999
Q ss_pred HHHHHHHHHHHHHh---CCCeEEEEeCCCCCC----CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccc
Q 001047 213 ALSNQKFREFRETF---GDNNVGLLTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285 (1174)
Q Consensus 213 aLa~Q~~~~l~~~~---g~~~v~lltGd~~~~----~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l 285 (1174)
+|+.|+++.+.+.. +...++...|+.... ..++|+|+||++|.+++.+. ....+.++++||+||||++
T Consensus 106 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~-----~~~~~~~~~~iViDEah~~ 180 (412)
T 3fht_A 106 ELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-----KFIDPKKIKVFVLDEADVM 180 (412)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTS-----CSSCGGGCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhc-----CCcChhhCcEEEEeCHHHH
Confidence 99999999888854 345788887766543 35799999999999988652 2334678999999999999
Q ss_pred cc-CCcHHHHHHHHHHCCCCccEEEEccccCCh-HHHHHHHhcccCceeeecCCCCc---cccEEeeccccccccccccc
Q 001047 286 SD-ISRGTVWEEIIIYCPKEVQIICLSATVANA-DELAGWIGQIHGKTELITSSRRP---VPLTWYFSTKTALLPLLDEK 360 (1174)
Q Consensus 286 ~d-~~~g~~~e~ii~~l~~~~qiI~LSATl~n~-~~~~~~l~~~~~~~~~i~~~~rp---vpl~~~~~~~~~~~~~~~~~ 360 (1174)
.+ ..+...+..+...++.+.|+++||||+++. ..+...+. .....+...... ..+..++..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----------- 246 (412)
T 3fht_A 181 IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV---PDPNVIKLKREEETLDTIKQYYVL----------- 246 (412)
T ss_dssp HSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHS---SSCEEECCCGGGSSCTTEEEEEEE-----------
T ss_pred hhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhc---CCCeEEeeccccccccCceEEEEE-----------
Confidence 86 577788888888889999999999999752 22322221 111111110000 000000000
Q ss_pred ccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHH-HHhC
Q 001047 361 GKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH-LRSR 439 (1174)
Q Consensus 361 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~-l~~~ 439 (1174)
. .........+.. +...
T Consensus 247 -----------------------------------------------------~---------~~~~~~~~~l~~~~~~~ 264 (412)
T 3fht_A 247 -----------------------------------------------------C---------SSRDEKFQALCNLYGAI 264 (412)
T ss_dssp -----------------------------------------------------C---------SSHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------c---------CChHHHHHHHHHHHhhc
Confidence 0 000011122222 2233
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
...++||||++++.|+.++..|...++ ++.++||+|++.+|..+++
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~~~~~~~~~r~~~~~ 310 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGH----------------------------------QVALLSGEMMVEQRAAVIE 310 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTC----------------------------------CCEEECTTSCHHHHHHHHH
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCC----------------------------------eEEEecCCCCHHHHHHHHH
Confidence 557899999999999999999986554 7899999999999999999
Q ss_pred HHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccc------cCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ------LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p------~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
.|++|.++|||||+++++|||+|++++||+ ++.| .+..+|+||+|||||.| ..|.|++++++.+
T Consensus 311 ~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~--------~~~p~~~~~~~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~ 380 (412)
T 3fht_A 311 RFREGKEKVLVTTNVCARGIDVEQVSVVIN--------FDLPVDKDGNPDNETYLHRIGRTGRFG--KRGLAVNMVDSKH 380 (412)
T ss_dssp HHHTTSCSEEEECGGGTSSCCCTTEEEEEE--------SSCCBCSSSSBCHHHHHHHHTTSSCTT--CCEEEEEEECSHH
T ss_pred HHHCCCCcEEEEcCccccCCCccCCCEEEE--------ECCCCCCCCCcchheeecccCcccCCC--CCceEEEEEcChh
Confidence 999999999999999999999999999999 6666 57899999999999998 7899999997654
No 13
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.1e-41 Score=402.06 Aligned_cols=333 Identities=15% Similarity=0.225 Sum_probs=253.6
Q ss_pred HHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh---cCCeEEEEcccHHHH
Q 001047 139 VKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---NQRRIFYTTPLKALS 215 (1174)
Q Consensus 139 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~---~g~rvlvl~PtraLa 215 (1174)
|.++++.+.....+.......|+|+|.++++.+++|+++++++|||+|||++|++|+++.+. .+.++||++||++|+
T Consensus 39 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~ 118 (410)
T 2j0s_A 39 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELA 118 (410)
T ss_dssp GGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHH
T ss_pred HhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHH
Confidence 44455555555566555445699999999999999999999999999999999999998764 467999999999999
Q ss_pred HHHHHHHHHHhC--CCeEEEEeCCCCCC-------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 216 NQKFREFRETFG--DNNVGLLTGDSAIN-------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 216 ~Q~~~~l~~~~g--~~~v~lltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
.|+++++.+... ...++.+.|+.... .+++|+|+||++|.+++.. ....+.++++||+||||++.
T Consensus 119 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~------~~~~~~~~~~vViDEah~~~ 192 (410)
T 2j0s_A 119 VQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR------RSLRTRAIKMLVLDEADEML 192 (410)
T ss_dssp HHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT------TSSCCTTCCEEEEETHHHHT
T ss_pred HHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh------CCccHhheeEEEEccHHHHH
Confidence 999999998543 34677788876532 3679999999999999876 34456789999999999999
Q ss_pred cCCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccch
Q 001047 287 DISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366 (1174)
Q Consensus 287 d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~ 366 (1174)
+.++...+..++..++++.|+++||||+++ .+.+++...... |....+..... ...
T Consensus 193 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~-----------~~~~~~~~~~~-----------~~~ 248 (410)
T 2j0s_A 193 NKGFKEQIYDVYRYLPPATQVVLISATLPH--EILEMTNKFMTD-----------PIRILVKRDEL-----------TLE 248 (410)
T ss_dssp STTTHHHHHHHHTTSCTTCEEEEEESCCCH--HHHTTGGGTCSS-----------CEEECCCGGGC-----------SCT
T ss_pred hhhhHHHHHHHHHhCccCceEEEEEcCCCH--HHHHHHHHHcCC-----------CEEEEecCccc-----------cCC
Confidence 999999999999999999999999999973 333333321111 11111000000 000
Q ss_pred hhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHH-HHhCCCCCeE
Q 001047 367 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH-LRSRDMLPAI 445 (1174)
Q Consensus 367 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~I 445 (1174)
.+...+.. .. ........+.. +......++|
T Consensus 249 ~~~~~~~~--------------------------------------~~----------~~~~k~~~l~~~~~~~~~~~~l 280 (410)
T 2j0s_A 249 GIKQFFVA--------------------------------------VE----------REEWKFDTLCDLYDTLTITQAV 280 (410)
T ss_dssp TEEEEEEE--------------------------------------ES----------STTHHHHHHHHHHHHHTSSEEE
T ss_pred CceEEEEE--------------------------------------eC----------cHHhHHHHHHHHHHhcCCCcEE
Confidence 00000000 00 00001112222 2222446899
Q ss_pred EEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCC
Q 001047 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGL 525 (1174)
Q Consensus 446 VF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ 525 (1174)
|||++++.|+.+++.|...++ .+..+||+|++.+|..+++.|++|.
T Consensus 281 Vf~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (410)
T 2j0s_A 281 IFCNTKRKVDWLTEKMREANF----------------------------------TVSSMHGDMPQKERESIMKEFRSGA 326 (410)
T ss_dssp EECSSHHHHHHHHHHHHHTTC----------------------------------CCEEECTTSCHHHHHHHHHHHHHTS
T ss_pred EEEcCHHHHHHHHHHHHhCCC----------------------------------ceEEeeCCCCHHHHHHHHHHHHCCC
Confidence 999999999999999986654 6899999999999999999999999
Q ss_pred ceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 526 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 526 ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
++|||||+++++|+|+|++++||+ ++.|.+...|+||+|||||.| ..|.|+++.++.+
T Consensus 327 ~~vlv~T~~~~~Gidi~~v~~Vi~--------~~~p~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~ 384 (410)
T 2j0s_A 327 SRVLISTDVWARGLDVPQVSLIIN--------YDLPNNRELYIHRIGRSGRYG--RKGVAINFVKNDD 384 (410)
T ss_dssp SCEEEECGGGSSSCCCTTEEEEEE--------SSCCSSHHHHHHHHTTSSGGG--CCEEEEEEEEGGG
T ss_pred CCEEEECChhhCcCCcccCCEEEE--------ECCCCCHHHHHHhcccccCCC--CceEEEEEecHHH
Confidence 999999999999999999999999 889999999999999999999 7899998887644
No 14
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.1e-41 Score=398.17 Aligned_cols=331 Identities=18% Similarity=0.202 Sum_probs=259.3
Q ss_pred HHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q 001047 137 NEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---NQRRIFYTTPLKA 213 (1174)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~---~g~rvlvl~Ptra 213 (1174)
..|.++++.+...+.+.......|+|+|.++++.+++++++++++|||+|||++|++|++..+. .+.+++|++|+++
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 100 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRE 100 (400)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHH
Confidence 3567777777777777776666799999999999999999999999999999999999998775 4568999999999
Q ss_pred HHHHHHHHHHHHhC--CCeEEEEeCCCCC-------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc
Q 001047 214 LSNQKFREFRETFG--DNNVGLLTGDSAI-------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 214 La~Q~~~~l~~~~g--~~~v~lltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~ 284 (1174)
|+.|+++.+.+.+. +..++.++|+... ...++|+|+||++|.+++.. ....+.++++||+||||+
T Consensus 101 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~------~~~~~~~~~~vIiDEaH~ 174 (400)
T 1s2m_A 101 LALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR------KVADLSDCSLFIMDEADK 174 (400)
T ss_dssp HHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT------TCSCCTTCCEEEEESHHH
T ss_pred HHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh------CCcccccCCEEEEeCchH
Confidence 99999999998764 3568888887642 35789999999999988865 344578899999999999
Q ss_pred cccCCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCC--CccccEEeeccccccccccccccc
Q 001047 285 LSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSR--RPVPLTWYFSTKTALLPLLDEKGK 362 (1174)
Q Consensus 285 l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~--rpvpl~~~~~~~~~~~~~~~~~~~ 362 (1174)
+.+..++..+..++..+++..|+++||||++. .+..++.........+.... ....+..++..
T Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 239 (400)
T 1s2m_A 175 MLSRDFKTIIEQILSFLPPTHQSLLFSATFPL--TVKEFMVKHLHKPYEINLMEELTLKGITQYYAF------------- 239 (400)
T ss_dssp HSSHHHHHHHHHHHTTSCSSCEEEEEESCCCH--HHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEE-------------
T ss_pred hhhhchHHHHHHHHHhCCcCceEEEEEecCCH--HHHHHHHHHcCCCeEEEeccccccCCceeEEEE-------------
Confidence 99888888898888888889999999999873 34444432211111110000 00000000000
Q ss_pred ccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHH-HHhCCC
Q 001047 363 HMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH-LRSRDM 441 (1174)
Q Consensus 363 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~-l~~~~~ 441 (1174)
. . .......+.. +.....
T Consensus 240 ----------~----------------------------------------~-----------~~~k~~~l~~~~~~~~~ 258 (400)
T 1s2m_A 240 ----------V----------------------------------------E-----------ERQKLHCLNTLFSKLQI 258 (400)
T ss_dssp ----------C----------------------------------------C-----------GGGHHHHHHHHHHHSCC
T ss_pred ----------e----------------------------------------c-----------hhhHHHHHHHHHhhcCC
Confidence 0 0 0001111222 223455
Q ss_pred CCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHH
Q 001047 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 521 (1174)
Q Consensus 442 ~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F 521 (1174)
+++||||++++.|+.+++.|...++ ++..+||+|++.+|..+++.|
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~~~~~~~~~r~~~~~~f 304 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDLGY----------------------------------SCYYSHARMKQQERNKVFHEF 304 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTC----------------------------------CEEEECTTSCHHHHHHHHHHH
T ss_pred CcEEEEEecHHHHHHHHHHHHhcCC----------------------------------CeEEecCCCCHHHHHHHHHHH
Confidence 7899999999999999999876554 688999999999999999999
Q ss_pred hcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 522 QRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 522 ~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
++|.++|||||+++++|+|+|++++||+ ++.|.++.+|+||+|||||.| ..|.|++++++.+
T Consensus 305 ~~g~~~vLv~T~~~~~Gidip~~~~Vi~--------~~~p~s~~~~~Qr~GR~gR~g--~~g~~~~l~~~~~ 366 (400)
T 1s2m_A 305 RQGKVRTLVCSDLLTRGIDIQAVNVVIN--------FDFPKTAETYLHRIGRSGRFG--HLGLAINLINWND 366 (400)
T ss_dssp HTTSSSEEEESSCSSSSCCCTTEEEEEE--------SSCCSSHHHHHHHHCBSSCTT--CCEEEEEEECGGG
T ss_pred hcCCCcEEEEcCccccCCCccCCCEEEE--------eCCCCCHHHHHHhcchhcCCC--CCceEEEEeccch
Confidence 9999999999999999999999999999 889999999999999999999 7899999988754
No 15
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.9e-41 Score=389.30 Aligned_cols=329 Identities=19% Similarity=0.257 Sum_probs=260.3
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcC-CcEEEEccCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHH
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRG-SSVVVSAPTSSGKTLIAEAAAVATVAN--QRRIFYTTPLKAL 214 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g-~~vlv~apTGsGKTlv~~~~il~~l~~--g~rvlvl~PtraL 214 (1174)
.|..+++.+.....+.+.....|+|+|.++++.++++ +++++.+|||+|||++|.++++..+.. +.+++|++|+++|
T Consensus 7 ~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L 86 (367)
T 1hv8_A 7 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTREL 86 (367)
T ss_dssp CGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHH
T ss_pred chhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHH
Confidence 3556666777777777777778999999999999988 699999999999999999999887754 6799999999999
Q ss_pred HHHHHHHHHHHhCC--CeEEEEeCCCCCC------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 215 SNQKFREFRETFGD--NNVGLLTGDSAIN------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 215 a~Q~~~~l~~~~g~--~~v~lltGd~~~~------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
+.|+++++.+.++. ..++.+.|+.... .+++|+|+||+.|.+++.. ....+.++++||+||||++.
T Consensus 87 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~------~~~~~~~~~~iIiDEah~~~ 160 (367)
T 1hv8_A 87 AIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINR------GTLNLKNVKYFILDEADEML 160 (367)
T ss_dssp HHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHT------TCSCTTSCCEEEEETHHHHH
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHc------CCcccccCCEEEEeCchHhh
Confidence 99999999998764 4677788876532 2689999999999998875 34457889999999999999
Q ss_pred cCCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccch
Q 001047 287 DISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366 (1174)
Q Consensus 287 d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~ 366 (1174)
+..+...+..++..+++..++++||||+++. ...++....+....+...... .+...+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------------- 220 (367)
T 1hv8_A 161 NMGFIKDVEKILNACNKDKRILLFSATMPRE--ILNLAKKYMGDYSFIKAKINA-NIEQSYVE----------------- 220 (367)
T ss_dssp TTTTHHHHHHHHHTSCSSCEEEEECSSCCHH--HHHHHHHHCCSEEEEECCSSS-SSEEEEEE-----------------
T ss_pred hhchHHHHHHHHHhCCCCceEEEEeeccCHH--HHHHHHHHcCCCeEEEecCCC-CceEEEEE-----------------
Confidence 8889899999999998899999999999742 222222211222222111110 11110000
Q ss_pred hhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEE
Q 001047 367 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIW 446 (1174)
Q Consensus 367 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IV 446 (1174)
.........+..+......++||
T Consensus 221 ---------------------------------------------------------~~~~~~~~~l~~~l~~~~~~~lv 243 (367)
T 1hv8_A 221 ---------------------------------------------------------VNENERFEALCRLLKNKEFYGLV 243 (367)
T ss_dssp ---------------------------------------------------------CCGGGHHHHHHHHHCSTTCCEEE
T ss_pred ---------------------------------------------------------eChHHHHHHHHHHHhcCCCcEEE
Confidence 00001122333334456678999
Q ss_pred EecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCc
Q 001047 447 FIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLV 526 (1174)
Q Consensus 447 F~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~i 526 (1174)
||++++.|+.+++.|...++ ++..+||++++.+|..+++.|++|.+
T Consensus 244 f~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~~~~~~~~~r~~~~~~f~~~~~ 289 (367)
T 1hv8_A 244 FCKTKRDTKELASMLRDIGF----------------------------------KAGAIHGDLSQSQREKVIRLFKQKKI 289 (367)
T ss_dssp ECSSHHHHHHHHHHHHHTTC----------------------------------CEEEECSSSCHHHHHHHHHHHHTTSS
T ss_pred EECCHHHHHHHHHHHHhcCC----------------------------------CeEEeeCCCCHHHHHHHHHHHHcCCC
Confidence 99999999999999986554 68999999999999999999999999
Q ss_pred eEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 527 KVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 527 kVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
+|||||+++++|+|+|++++||+ ++.|.|+.+|+||+|||||.| ..|.++++.++.+
T Consensus 290 ~vlv~T~~~~~Gid~~~~~~Vi~--------~~~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~ 346 (367)
T 1hv8_A 290 RILIATDVMSRGIDVNDLNCVIN--------YHLPQNPESYMHRIGRTGRAG--KKGKAISIINRRE 346 (367)
T ss_dssp SEEEECTTHHHHCCCSCCSEEEE--------SSCCSCHHHHHHHSTTTCCSS--SCCEEEEEECTTS
T ss_pred eEEEECChhhcCCCcccCCEEEE--------ecCCCCHHHhhhcccccccCC--CccEEEEEEcHHH
Confidence 99999999999999999999999 889999999999999999999 6899998887754
No 16
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=6.4e-42 Score=406.73 Aligned_cols=333 Identities=18% Similarity=0.215 Sum_probs=241.0
Q ss_pred HHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh---cCCeEEEEcccHHHH
Q 001047 139 VKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---NQRRIFYTTPLKALS 215 (1174)
Q Consensus 139 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~---~g~rvlvl~PtraLa 215 (1174)
|..+++.....+.+.......|+++|.++++.+++|+++++++|||||||++|.+++++.+. .+.+++|++|+++|+
T Consensus 42 f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~ 121 (414)
T 3eiq_A 42 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELA 121 (414)
T ss_dssp GGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHH
T ss_pred HhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHH
Confidence 33445555555556665555899999999999999999999999999999999999998875 467899999999999
Q ss_pred HHHHHHHHHHhC--CCeEEEEeCCCCCC--------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccc
Q 001047 216 NQKFREFRETFG--DNNVGLLTGDSAIN--------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285 (1174)
Q Consensus 216 ~Q~~~~l~~~~g--~~~v~lltGd~~~~--------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l 285 (1174)
.|+++.+.+.+. ...++.+.|+.... ..++|+|+||++|.+++.. ....+.++++||+||||++
T Consensus 122 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~------~~~~~~~~~~vViDEah~~ 195 (414)
T 3eiq_A 122 QQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR------RYLSPKYIKMFVLDEADEM 195 (414)
T ss_dssp HHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH------TSSCSTTCCEEEECSHHHH
T ss_pred HHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc------CCcccccCcEEEEECHHHh
Confidence 999999998653 34567777765432 5789999999999998876 3445678999999999999
Q ss_pred ccCCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccc
Q 001047 286 SDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 365 (1174)
Q Consensus 286 ~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~ 365 (1174)
.+.+++..+..++..++++.|+|+||||+++ ....++.........+.......+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 252 (414)
T 3eiq_A 196 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPS--DVLEVTKKFMRDPIRILVKKEELTLE--------------------- 252 (414)
T ss_dssp HHTTTHHHHHHHHTTSCTTCEEEEECSCCCH--HHHHHHTTTCSSCEEECCCCCCCCTT---------------------
T ss_pred hccCcHHHHHHHHHhCCCCCeEEEEEEecCH--HHHHHHHHHcCCCEEEEecCCccCCC---------------------
Confidence 9889999999999999999999999999863 23333322211111111110000000
Q ss_pred hhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHH-HhCCCCCe
Q 001047 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL-RSRDMLPA 444 (1174)
Q Consensus 366 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~~ 444 (1174)
.+...+.. ..........+..+ ......++
T Consensus 253 -~~~~~~~~------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~ 283 (414)
T 3eiq_A 253 -GIRQFYIN------------------------------------------------VEREEWKLDTLCDLYETLTITQA 283 (414)
T ss_dssp -SCCEEEEE------------------------------------------------CSSSTTHHHHHHHHHHSSCCSSC
T ss_pred -CceEEEEE------------------------------------------------eChHHhHHHHHHHHHHhCCCCcE
Confidence 00000000 00001112223333 33455799
Q ss_pred EEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcC
Q 001047 445 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRG 524 (1174)
Q Consensus 445 IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G 524 (1174)
||||++++.|+.+++.|...++ ++..+||+|++.+|..+++.|++|
T Consensus 284 lvf~~~~~~~~~l~~~l~~~~~----------------------------------~~~~~h~~~~~~~r~~~~~~f~~g 329 (414)
T 3eiq_A 284 VIFINTRRKVDWLTEKMHARDF----------------------------------TVSAMHGDMDQKERDVIMREFRSG 329 (414)
T ss_dssp EEECSCHHHHHHHHHHHHTTTC----------------------------------CCEEC---CHHHHHHHHHHHHSCC
T ss_pred EEEeCCHHHHHHHHHHHHhcCC----------------------------------eEEEecCCCCHHHHHHHHHHHHcC
Confidence 9999999999999999986654 689999999999999999999999
Q ss_pred CceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 525 LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 525 ~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
.++|||||+++++|||+|++++||+ ++.|.+..+|+||+|||||.| ..|.|++++++.+
T Consensus 330 ~~~vlv~T~~~~~Gidip~v~~Vi~--------~~~p~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~ 388 (414)
T 3eiq_A 330 SSRVLITTDLLARGIDVQQVSLVIN--------YDLPTNRENYIHRIGRGGRFG--RKGVAINMVTEED 388 (414)
T ss_dssp ---CEEECSSCC--CCGGGCSCEEE--------SSCCSSTHHHHHHSCCC---------CEEEEECSTH
T ss_pred CCcEEEECCccccCCCccCCCEEEE--------eCCCCCHHHhhhhcCcccCCC--CCceEEEEEcHHH
Confidence 9999999999999999999999999 889999999999999999999 7899999988754
No 17
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=6.3e-43 Score=424.05 Aligned_cols=334 Identities=17% Similarity=0.174 Sum_probs=147.7
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcC--CcEEEEccCCcchHHHHHHHHHHHHhcCC---eEEEEcccH
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRG--SSVVVSAPTSSGKTLIAEAAAVATVANQR---RIFYTTPLK 212 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g--~~vlv~apTGsGKTlv~~~~il~~l~~g~---rvlvl~Ptr 212 (1174)
.|..+++.+.....+.......|+|+|.++++.++.+ ++++++||||||||++|++|++..+..+. ++||++||+
T Consensus 93 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~ 172 (479)
T 3fmp_B 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 172 (479)
T ss_dssp CSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSH
T ss_pred CHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChH
Confidence 4555666666677777776778999999999999987 89999999999999999999998876543 899999999
Q ss_pred HHHHHHHHHHHHHh---CCCeEEEEeCCCCCC----CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccc
Q 001047 213 ALSNQKFREFRETF---GDNNVGLLTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285 (1174)
Q Consensus 213 aLa~Q~~~~l~~~~---g~~~v~lltGd~~~~----~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l 285 (1174)
+|+.|+++.+.+.. +...++...|+.... ..++|+|+||++|.+++.+. ....+.++++|||||||++
T Consensus 173 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-----~~~~~~~~~~iViDEah~~ 247 (479)
T 3fmp_B 173 ELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-----KFIDPKKIKVFVLDEADVM 247 (479)
T ss_dssp HHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTS-----CCCCGGGCCEEEECCHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhc-----CCcCcccCCEEEEECHHHH
Confidence 99999988887753 345677777766543 35689999999999998652 2335689999999999999
Q ss_pred cc-CCcHHHHHHHHHHCCCCccEEEEccccCCh-HHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccc
Q 001047 286 SD-ISRGTVWEEIIIYCPKEVQIICLSATVANA-DELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKH 363 (1174)
Q Consensus 286 ~d-~~~g~~~e~ii~~l~~~~qiI~LSATl~n~-~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~ 363 (1174)
.+ ..+...+..+...++.++|+|+||||+++. ..++..+. .....+........
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~---~~~~~i~~~~~~~~--------------------- 303 (479)
T 3fmp_B 248 IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV---PDPNVIKLKREEET--------------------- 303 (479)
T ss_dssp HTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHS---SSEEEEEEC--------------------------
T ss_pred hhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHc---CCCeEEeccccccC---------------------
Confidence 86 477777778888888899999999999753 23333221 11111111000000
Q ss_pred cchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHH-HHhCCCC
Q 001047 364 MNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH-LRSRDML 442 (1174)
Q Consensus 364 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~ 442 (1174)
...+...++.... .......+.. +......
T Consensus 304 -~~~~~~~~~~~~~------------------------------------------------~~~~~~~l~~~~~~~~~~ 334 (479)
T 3fmp_B 304 -LDTIKQYYVLCSS------------------------------------------------RDEKFQALCNLYGAITIA 334 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -cCCceEEEEEeCC------------------------------------------------HHHHHHHHHHHHhhccCC
Confidence 0000000000000 0000111111 1122346
Q ss_pred CeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHh
Q 001047 443 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQ 522 (1174)
Q Consensus 443 ~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~ 522 (1174)
++||||++++.|+.++..|...++ ++.+|||+|++.+|..+++.|+
T Consensus 335 ~~lvF~~s~~~~~~l~~~L~~~~~----------------------------------~v~~lh~~~~~~~R~~~~~~f~ 380 (479)
T 3fmp_B 335 QAMIFCHTRKTASWLAAELSKEGH----------------------------------QVALLSGEMMVEQRAAVIERFR 380 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEeCcHHHHHHHHHHHHhCCc----------------------------------cEEEecCCCCHHHHHHHHHHHH
Confidence 899999999999999998875443 6889999999999999999999
Q ss_pred cCCceEEEechhhhhcCCcCCceEEEecccccCCCCccc------cCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 523 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ------LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 523 ~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p------~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
+|.++|||||+++++|||+|++++||+ ++.| .+..+|+||+|||||.| ..|.|++++++.+
T Consensus 381 ~g~~~iLv~T~~~~~GlDip~v~~VI~--------~d~p~~~~~~~s~~~~~Qr~GRagR~g--~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 381 EGKEKVLVTTNVCARGIDVEQVSVVIN--------FDLPVDKDGNPDNETYLHRIGRTGRFG--KRGLAVNMVDSKH 447 (479)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cCCCcEEEEccccccCCccccCCEEEE--------ecCCCCCccCCCHHHHHHHhcccccCC--CCceEEEEEcCcc
Confidence 999999999999999999999999999 6666 46789999999999998 7899999887654
No 18
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.2e-41 Score=416.42 Aligned_cols=339 Identities=17% Similarity=0.183 Sum_probs=246.2
Q ss_pred CCcCChHHHhhcCCCCCCHHHHHHHHHHH--cCCcEEEEccCCcchHHHHHHHHHHHHhcCC-------eEEEEcccHHH
Q 001047 144 NEMIDVDELASIYDFRIDKFQRSSIEAFL--RGSSVVVSAPTSSGKTLIAEAAAVATVANQR-------RIFYTTPLKAL 214 (1174)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll--~g~~vlv~apTGsGKTlv~~~~il~~l~~g~-------rvlvl~PtraL 214 (1174)
+.+.....+.......|+|+|.++++.++ .+++++++||||||||++|++|+++.+..+. ++||++||++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 44444555555555569999999999999 6789999999999999999999998886543 89999999999
Q ss_pred HHHHHHHHHHHhC------CCeEEEEeCCCCC--------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEc
Q 001047 215 SNQKFREFRETFG------DNNVGLLTGDSAI--------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLD 280 (1174)
Q Consensus 215 a~Q~~~~l~~~~g------~~~v~lltGd~~~--------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiD 280 (1174)
+.|+++++.+.++ ...+..+.|+... ...++|+|+||++|.+++.+.. ...+.++++||||
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-----~~~~~~~~~lViD 233 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS-----NKFFRFVDYKVLD 233 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-----HHHCTTCCEEEEE
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc-----ccccccceEEEEe
Confidence 9999999998532 2446667776542 2368999999999999887531 2246789999999
Q ss_pred cccccccCCcHHHHHHHHHHC-------CCCccEEEEccccCCh-HHHHHHHhcccCceeeecCCCCccccEEeeccccc
Q 001047 281 EVHYLSDISRGTVWEEIIIYC-------PKEVQIICLSATVANA-DELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTA 352 (1174)
Q Consensus 281 EaH~l~d~~~g~~~e~ii~~l-------~~~~qiI~LSATl~n~-~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~ 352 (1174)
|||++.+++|+..++.++..+ ++++|+++||||+++. ..+..++.... ....+.......+.
T Consensus 234 Eah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~--------- 303 (563)
T 3i5x_A 234 EADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKK-ECLFLDTVDKNEPE--------- 303 (563)
T ss_dssp THHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSS-EEEEEESSCSSSCS---------
T ss_pred CHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCC-ceEEEeccCCCCcc---------
Confidence 999999999999999887654 3378999999999863 44443332111 01111100000000
Q ss_pred ccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHH
Q 001047 353 LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 432 (1174)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 432 (1174)
....+...+.. ...... ........
T Consensus 304 -----------~~~~~~~~~~~-----------------------------------~~~~~~---------~~~~~~~~ 328 (563)
T 3i5x_A 304 -----------AHERIDQSVVI-----------------------------------SEKFAN---------SIFAAVEH 328 (563)
T ss_dssp -----------SCTTEEEEEEE-----------------------------------ESSTTH---------HHHHHHHH
T ss_pred -----------ccccCceEEEE-----------------------------------CchhHh---------hHHHHHHH
Confidence 00000000000 000000 00011111
Q ss_pred H-HHHHh-CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCC
Q 001047 433 L-WHLRS-RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCL 510 (1174)
Q Consensus 433 l-~~l~~-~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~ 510 (1174)
+ ..+.. ....++||||++++.|+.++..|..... -...+..|||+|+
T Consensus 329 l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-------------------------------~~~~v~~~h~~~~ 377 (563)
T 3i5x_A 329 IKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-------------------------------KDLPILEFHGKIT 377 (563)
T ss_dssp HHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-------------------------------TTSCEEEESTTSC
T ss_pred HHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-------------------------------CCceEEEecCCCC
Confidence 2 22222 4567999999999999999998874300 0126899999999
Q ss_pred HHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeC
Q 001047 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 590 (1174)
Q Consensus 511 ~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~ 590 (1174)
+.+|..+++.|++|.++|||||+++++|||+|++++||+ ++.|.++.+|+||+|||||.| ..|.|+++++
T Consensus 378 ~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--------~~~p~s~~~y~Qr~GRagR~g--~~g~~i~~~~ 447 (563)
T 3i5x_A 378 QNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IGVPSELANYIHRIGRTARSG--KEGSSVLFIC 447 (563)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ESCCSSTTHHHHHHTTSSCTT--CCEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE--------ECCCCchhhhhhhcCccccCC--CCceEEEEEc
Confidence 999999999999999999999999999999999999999 889999999999999999999 7899998888
Q ss_pred CCC
Q 001047 591 PYE 593 (1174)
Q Consensus 591 ~~~ 593 (1174)
+.+
T Consensus 448 ~~e 450 (563)
T 3i5x_A 448 KDE 450 (563)
T ss_dssp GGG
T ss_pred hhH
Confidence 754
No 19
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.1e-40 Score=392.83 Aligned_cols=332 Identities=17% Similarity=0.197 Sum_probs=257.6
Q ss_pred HHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEcccHH
Q 001047 137 NEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPLKA 213 (1174)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~Ptra 213 (1174)
..|.++++.+...+.+.......|+|+|.++++.++.++++++++|||+|||++|++|++..+.. +.++||++|+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 34667777777777777765556999999999999999999999999999999999999987653 558999999999
Q ss_pred HHHHHHHHHHHHhC---CCeEEEEeCCCCCC--------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccc
Q 001047 214 LSNQKFREFRETFG---DNNVGLLTGDSAIN--------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEV 282 (1174)
Q Consensus 214 La~Q~~~~l~~~~g---~~~v~lltGd~~~~--------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEa 282 (1174)
|++|+++++.+... +..++.++|+.... ..++|+|+||++|.+++.. ....+.++++||+|||
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~------~~~~~~~~~~vViDEa 161 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN------KSLNLKHIKHFILDEC 161 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT------TSSCCTTCSEEEECSH
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc------CCccccccCEEEEeCH
Confidence 99999999988643 56789999886532 3479999999999998875 3445789999999999
Q ss_pred cccccC-CcHHHHHHHHHHCCCCccEEEEccccCCh-HHHH-HHHhcccCceeeecCCC-Cc--cccEEeeccccccccc
Q 001047 283 HYLSDI-SRGTVWEEIIIYCPKEVQIICLSATVANA-DELA-GWIGQIHGKTELITSSR-RP--VPLTWYFSTKTALLPL 356 (1174)
Q Consensus 283 H~l~d~-~~g~~~e~ii~~l~~~~qiI~LSATl~n~-~~~~-~~l~~~~~~~~~i~~~~-rp--vpl~~~~~~~~~~~~~ 356 (1174)
|++.+. .+...+..++...+...|+++||||+++. ..+. .++. .+..+..... .+ ..+..++..
T Consensus 162 H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~------- 231 (391)
T 1xti_A 162 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ---DPMEIFVDDETKLTLHGLQQYYVK------- 231 (391)
T ss_dssp HHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCS---SCEEEECCCCCCCCCTTCEEEEEE-------
T ss_pred HHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcC---CCeEEEecCccccCcccceEEEEE-------
Confidence 999874 67777888888888899999999999863 2322 2322 1111111110 00 000000000
Q ss_pred ccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHH
Q 001047 357 LDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL 436 (1174)
Q Consensus 357 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l 436 (1174)
... ......+...+
T Consensus 232 --------------------------------------------------------~~~----------~~~~~~l~~~l 245 (391)
T 1xti_A 232 --------------------------------------------------------LKD----------NEKNRKLFDLL 245 (391)
T ss_dssp --------------------------------------------------------CCG----------GGHHHHHHHHH
T ss_pred --------------------------------------------------------cCc----------hhHHHHHHHHH
Confidence 000 00001112222
Q ss_pred HhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHH
Q 001047 437 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSF 516 (1174)
Q Consensus 437 ~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~ 516 (1174)
......++||||++++.|+.+++.|...++ .+..+||+|++.+|..
T Consensus 246 ~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~~~~~~~~~r~~ 291 (391)
T 1xti_A 246 DVLEFNQVVIFVKSVQRCIALAQLLVEQNF----------------------------------PAIAIHRGMPQEERLS 291 (391)
T ss_dssp HHSCCSEEEEECSCHHHHHHHHHHHHHTTC----------------------------------CEEEECTTSCHHHHHH
T ss_pred HhcCCCcEEEEeCcHHHHHHHHHHHHhCCC----------------------------------cEEEEeCCCCHHHHHH
Confidence 334667999999999999999999986654 6889999999999999
Q ss_pred HHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCC
Q 001047 517 IEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 594 (1174)
Q Consensus 517 v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~ 594 (1174)
+++.|++|..+|||||+++++|+|+|++++||+ ++.|.+...|+||+|||||.| ..|.|+++.++.++
T Consensus 292 ~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~--------~~~p~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 292 RYQQFKDFQRRILVATNLFGRGMDIERVNIAFN--------YDMPEDSDTYLHRVARAGRFG--TKGLAITFVSDEND 359 (391)
T ss_dssp HHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE--------SSCCSSHHHHHHHHCBCSSSC--CCCEEEEEECSHHH
T ss_pred HHHHHhcCCCcEEEECChhhcCCCcccCCEEEE--------eCCCCCHHHHHHhcccccCCC--CceEEEEEEcccch
Confidence 999999999999999999999999999999999 889999999999999999999 78999999987543
No 20
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=9.4e-41 Score=411.07 Aligned_cols=321 Identities=21% Similarity=0.262 Sum_probs=244.7
Q ss_pred ccCCcCChHHHhhcCCC-CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHH
Q 001047 142 FGNEMIDVDELASIYDF-RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFR 220 (1174)
Q Consensus 142 ~~~~~~~~~~l~~~~~~-~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~ 220 (1174)
|+++......++..|+| .|+|+|.++|+.+++|+++++.+|||+|||++|++|++. .++++||++|+++|+.|+++
T Consensus 26 ~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~---~~g~~lVisP~~~L~~q~~~ 102 (591)
T 2v1x_A 26 FPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---SDGFTLVICPLISLMEDQLM 102 (591)
T ss_dssp STTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT---SSSEEEEECSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH---cCCcEEEEeCHHHHHHHHHH
Confidence 44444555667776665 699999999999999999999999999999999999975 46799999999999999999
Q ss_pred HHHHHhCCCeEEEEeCCCC-------------CCCCCcEEEEcHHHHH------HHHhcccccccCCCCCCceeEEEEcc
Q 001047 221 EFRETFGDNNVGLLTGDSA-------------INREAQILIMTTEILR------NMLYQSVGMVSSESGLFDVDVIVLDE 281 (1174)
Q Consensus 221 ~l~~~~g~~~v~lltGd~~-------------~~~~~~IlV~Tpe~L~------~~L~~~~~~~~~~~~l~~v~lVIiDE 281 (1174)
.+.+. | ..++.++|+.. .+...+|+|+||++|. +.+.. ...+.++++|||||
T Consensus 103 ~l~~~-g-i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-------~~~~~~i~~iViDE 173 (591)
T 2v1x_A 103 VLKQL-G-ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-------AYEARRFTRIAVDE 173 (591)
T ss_dssp HHHHH-T-CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-------HHHTTCEEEEEEET
T ss_pred HHHhc-C-CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-------hhhccCCcEEEEEC
Confidence 99985 4 66888888764 2457899999999874 22221 12356899999999
Q ss_pred ccccccCC--cHHHHHH--HHHHCCCCccEEEEccccCCh--HHHHHHHhcccCceeeecCCCCccccEEeecccccccc
Q 001047 282 VHYLSDIS--RGTVWEE--IIIYCPKEVQIICLSATVANA--DELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLP 355 (1174)
Q Consensus 282 aH~l~d~~--~g~~~e~--ii~~l~~~~qiI~LSATl~n~--~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~ 355 (1174)
||++++++ |.+.+.. .+....+++++|+||||+++. .++..|+... ....+........+.+.+....
T Consensus 174 AH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~--~~~~~~~~~~r~nl~~~v~~~~---- 247 (591)
T 2v1x_A 174 VHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIE--KCFTFTASFNRPNLYYEVRQKP---- 247 (591)
T ss_dssp GGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCC--SCEEEECCCCCTTEEEEEEECC----
T ss_pred cccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCC--CcEEEecCCCCcccEEEEEeCC----
Confidence 99999875 6666554 344444579999999999753 5566666532 1222222221111111110000
Q ss_pred cccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHH
Q 001047 356 LLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH 435 (1174)
Q Consensus 356 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 435 (1174)
.........+..
T Consensus 248 --------------------------------------------------------------------~~~~~~~~~l~~ 259 (591)
T 2v1x_A 248 --------------------------------------------------------------------SNTEDFIEDIVK 259 (591)
T ss_dssp --------------------------------------------------------------------SSHHHHHHHHHH
T ss_pred --------------------------------------------------------------------CcHHHHHHHHHH
Confidence 000011222222
Q ss_pred HHh--CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHH
Q 001047 436 LRS--RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIW 513 (1174)
Q Consensus 436 l~~--~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~ 513 (1174)
+.. ....++||||+|++.|+.++..|...++ .+.++||+|++.+
T Consensus 260 ~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~----------------------------------~~~~~h~~l~~~~ 305 (591)
T 2v1x_A 260 LINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGI----------------------------------HAGAYHANLEPED 305 (591)
T ss_dssp HHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEEECTTSCHHH
T ss_pred HHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCC----------------------------------CEEEecCCCCHHH
Confidence 222 2457899999999999999999987665 7899999999999
Q ss_pred HHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 514 KSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 514 R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
|..+++.|++|.++|||||+++++|||+|++++||+ ++.|.|..+|+||+|||||.| ..|.|++++++.
T Consensus 306 R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~--------~~~p~s~~~y~Qr~GRaGR~G--~~g~~i~l~~~~ 374 (591)
T 2v1x_A 306 KTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIH--------HSMSKSMENYYQESGRAGRDD--MKADCILYYGFG 374 (591)
T ss_dssp HHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE--------SSCCSSHHHHHHHHTTSCTTS--SCEEEEEEECHH
T ss_pred HHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEE--------eCCCCCHHHHHHHhccCCcCC--CCceEEEEEChH
Confidence 999999999999999999999999999999999999 899999999999999999999 789999998763
No 21
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8.4e-41 Score=414.47 Aligned_cols=339 Identities=17% Similarity=0.175 Sum_probs=245.7
Q ss_pred CCcCChHHHhhcCCCCCCHHHHHHHHHHH--cCCcEEEEccCCcchHHHHHHHHHHHHhcC-------CeEEEEcccHHH
Q 001047 144 NEMIDVDELASIYDFRIDKFQRSSIEAFL--RGSSVVVSAPTSSGKTLIAEAAAVATVANQ-------RRIFYTTPLKAL 214 (1174)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll--~g~~vlv~apTGsGKTlv~~~~il~~l~~g-------~rvlvl~PtraL 214 (1174)
+.+.....+.......|+|+|.++++.++ .+++++++||||+|||++|++|+++.+..+ .++||++||++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 44455555665555579999999999999 678999999999999999999999887643 489999999999
Q ss_pred HHHHHHHHHHHh------CCCeEEEEeCCCCCC--------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEc
Q 001047 215 SNQKFREFRETF------GDNNVGLLTGDSAIN--------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLD 280 (1174)
Q Consensus 215 a~Q~~~~l~~~~------g~~~v~lltGd~~~~--------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiD 280 (1174)
+.|+++++.+.+ ....+..+.|+.... ..++|+|+||++|.+++.... ...+..+++||||
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~-----~~~~~~~~~lViD 182 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS-----NKFFRFVDYKVLD 182 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-----HHHCTTCCEEEEE
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcc-----ccccccCCEEEEE
Confidence 999999999864 234566666765422 368999999999999886531 2246789999999
Q ss_pred cccccccCCcHHHHHHHHHHCC-------CCccEEEEccccCCh-HHHHHHHhcccCceeeecCCCCccccEEeeccccc
Q 001047 281 EVHYLSDISRGTVWEEIIIYCP-------KEVQIICLSATVANA-DELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTA 352 (1174)
Q Consensus 281 EaH~l~d~~~g~~~e~ii~~l~-------~~~qiI~LSATl~n~-~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~ 352 (1174)
|||++.+++|+..++.++..++ .++|+++||||+++. ..+..++.... ....+.......+.
T Consensus 183 Eah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~-~~~~~~~~~~~~~~--------- 252 (579)
T 3sqw_A 183 EADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKK-ECLFLDTVDKNEPE--------- 252 (579)
T ss_dssp THHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSS-EEEEEESSCSSSCS---------
T ss_pred ChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCC-ceEEEeecCccccc---------
Confidence 9999999999999988876652 378999999999863 33333322110 01111000000000
Q ss_pred ccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHH
Q 001047 353 LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDT 432 (1174)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 432 (1174)
....+...+.. ...... ........
T Consensus 253 -----------~~~~i~~~~~~-----------------------------------~~~~~~---------~~~~~~~~ 277 (579)
T 3sqw_A 253 -----------AHERIDQSVVI-----------------------------------SEKFAN---------SIFAAVEH 277 (579)
T ss_dssp -----------SCTTEEEEEEE-----------------------------------ESSTTH---------HHHHHHHH
T ss_pred -----------cccccceEEEE-----------------------------------ecchhh---------hHHHHHHH
Confidence 00000000000 000000 00011122
Q ss_pred HH-HHHh-CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCC
Q 001047 433 LW-HLRS-RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCL 510 (1174)
Q Consensus 433 l~-~l~~-~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~ 510 (1174)
+. .+.. ....++||||++++.|+.++..|..... -...+..+||+|+
T Consensus 278 l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-------------------------------~~~~v~~~hg~~~ 326 (579)
T 3sqw_A 278 IKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-------------------------------KDLPILEFHGKIT 326 (579)
T ss_dssp HHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-------------------------------TTSCEEEESTTSC
T ss_pred HHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-------------------------------CCCcEEEecCCCC
Confidence 22 2222 4557899999999999999998874300 0126889999999
Q ss_pred HHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeC
Q 001047 511 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 590 (1174)
Q Consensus 511 ~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~ 590 (1174)
+.+|..+++.|++|.++|||||+++++|||+|++++||+ ++.|.++..|+||+|||||.| ..|.|+++++
T Consensus 327 ~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~--------~~~p~s~~~y~Qr~GRagR~g--~~g~~i~~~~ 396 (579)
T 3sqw_A 327 QNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IGVPSELANYIHRIGRTARSG--KEGSSVLFIC 396 (579)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ESCCSSTTHHHHHHTTSSCTT--CCEEEEEEEE
T ss_pred HHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE--------cCCCCCHHHhhhhccccccCC--CCceEEEEEc
Confidence 999999999999999999999999999999999999999 889999999999999999999 7899998888
Q ss_pred CCC
Q 001047 591 PYE 593 (1174)
Q Consensus 591 ~~~ 593 (1174)
+.+
T Consensus 397 ~~e 399 (579)
T 3sqw_A 397 KDE 399 (579)
T ss_dssp GGG
T ss_pred ccH
Confidence 754
No 22
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.4e-39 Score=375.24 Aligned_cols=305 Identities=18% Similarity=0.226 Sum_probs=239.8
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC--
Q 001047 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG-- 227 (1174)
Q Consensus 150 ~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g-- 227 (1174)
+.++......|+|+|.++++.+++++++++++|||+|||++|++|++.. +.+++|++|+++|+.|+++++.+...
T Consensus 7 ~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~ 83 (337)
T 2z0m_A 7 QAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---GMKSLVVTPTRELTRQVASHIRDIGRYM 83 (337)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---cCCEEEEeCCHHHHHHHHHHHHHHhhhc
Confidence 3445544557999999999999999999999999999999999998764 78999999999999999999998543
Q ss_pred CCeEEEEeCCCCCC------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC
Q 001047 228 DNNVGLLTGDSAIN------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC 301 (1174)
Q Consensus 228 ~~~v~lltGd~~~~------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l 301 (1174)
+..++.+.|+.... .+++|+|+||++|.+++.. ....+.++++||+||||++.+..+...+..++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~ 157 (337)
T 2z0m_A 84 DTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSK------GVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQT 157 (337)
T ss_dssp CCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHT------TSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHC
T ss_pred CCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHc------CCcchhhCcEEEEEChHHhhccccHHHHHHHHhhC
Confidence 35688888876532 3589999999999998765 23457789999999999999889999999999999
Q ss_pred CCCccEEEEccccCCh--HHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhccccc
Q 001047 302 PKEVQIICLSATVANA--DELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE 379 (1174)
Q Consensus 302 ~~~~qiI~LSATl~n~--~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 379 (1174)
+...++++||||+++. +.+..|+.. ...+........+...+.. .
T Consensus 158 ~~~~~~~~~SAT~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-----------------------~------ 204 (337)
T 2z0m_A 158 SNRKITGLFSATIPEEIRKVVKDFITN----YEEIEACIGLANVEHKFVH-----------------------V------ 204 (337)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHSCS----CEEEECSGGGGGEEEEEEE-----------------------C------
T ss_pred CcccEEEEEeCcCCHHHHHHHHHhcCC----ceeeecccccCCceEEEEE-----------------------e------
Confidence 9899999999999743 233333321 1111111000001000000 0
Q ss_pred CCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHH
Q 001047 380 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQ 459 (1174)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~ 459 (1174)
. ......+..+......++||||++++.|+.++.
T Consensus 205 ----------------------------------~------------~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~ 238 (337)
T 2z0m_A 205 ----------------------------------K------------DDWRSKVQALRENKDKGVIVFVRTRNRVAKLVR 238 (337)
T ss_dssp ----------------------------------S------------SSSHHHHHHHHTCCCSSEEEECSCHHHHHHHHT
T ss_pred ----------------------------------C------------hHHHHHHHHHHhCCCCcEEEEEcCHHHHHHHHH
Confidence 0 000011233344566799999999999998877
Q ss_pred HhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcC
Q 001047 460 YLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 539 (1174)
Q Consensus 460 ~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GI 539 (1174)
.|. .+..+||+|++.+|..+++.|++|.++|||||+++++|+
T Consensus 239 ~l~--------------------------------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 280 (337)
T 2z0m_A 239 LFD--------------------------------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGL 280 (337)
T ss_dssp TCT--------------------------------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTC
T ss_pred Hhh--------------------------------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCC
Confidence 664 477899999999999999999999999999999999999
Q ss_pred CcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeC
Q 001047 540 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 590 (1174)
Q Consensus 540 DiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~ 590 (1174)
|+|++++||+ ++.|.|+.+|+||+|||||.| ..|.|+++..
T Consensus 281 d~~~~~~Vi~--------~~~~~s~~~~~Q~~GR~gR~g--~~g~~~~~~~ 321 (337)
T 2z0m_A 281 DIPLVEKVIN--------FDAPQDLRTYIHRIGRTGRMG--RKGEAITFIL 321 (337)
T ss_dssp CCCCBSEEEE--------SSCCSSHHHHHHHHTTBCGGG--CCEEEEEEES
T ss_pred CccCCCEEEE--------ecCCCCHHHhhHhcCccccCC--CCceEEEEEe
Confidence 9999999999 889999999999999999999 6788888887
No 23
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=7.9e-40 Score=398.90 Aligned_cols=318 Identities=20% Similarity=0.272 Sum_probs=241.1
Q ss_pred ccCCcCChHHHhhcCCC-CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHH
Q 001047 142 FGNEMIDVDELASIYDF-RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFR 220 (1174)
Q Consensus 142 ~~~~~~~~~~l~~~~~~-~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~ 220 (1174)
+++.+.....+++.|++ .|+|+|.++++.+++|+++++++|||+|||++|++|++. .++++||++|+++|++|+++
T Consensus 7 l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~g~~lvi~P~~aL~~q~~~ 83 (523)
T 1oyw_A 7 LNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---LNGLTVVVSPLISLMKDQVD 83 (523)
T ss_dssp SSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH---SSSEEEEECSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH---hCCCEEEECChHHHHHHHHH
Confidence 33344445566665665 699999999999999999999999999999999999874 36789999999999999999
Q ss_pred HHHHHhCCCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCC
Q 001047 221 EFRETFGDNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDIS 289 (1174)
Q Consensus 221 ~l~~~~g~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~ 289 (1174)
.+.+ +| ..+..++|+... ....+|+|+|||+|...... ......++++|||||||++++++
T Consensus 84 ~l~~-~g-i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~------~~l~~~~~~~vViDEaH~i~~~g 155 (523)
T 1oyw_A 84 QLQA-NG-VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL------EHLAHWNPVLLAVDEAHCISQWG 155 (523)
T ss_dssp HHHH-TT-CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH------HHHTTSCEEEEEESSGGGGCTTS
T ss_pred HHHH-cC-CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH------HHHhhCCCCEEEEeCccccCcCC
Confidence 9998 44 557778776542 23589999999998532111 11123689999999999999775
Q ss_pred --cHHHHHHH---HHHCCCCccEEEEccccCCh--HHHHHHHhcccCceeeecCCCCccccEEeeccccccccccccccc
Q 001047 290 --RGTVWEEI---IIYCPKEVQIICLSATVANA--DELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK 362 (1174)
Q Consensus 290 --~g~~~e~i---i~~l~~~~qiI~LSATl~n~--~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~ 362 (1174)
|.+.+..+ ...+ ++.++++||||+++. .++..|++... +...+....+| .+.+.+...
T Consensus 156 ~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~-~~~~~~~~~r~-~l~~~v~~~------------ 220 (523)
T 1oyw_A 156 HDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLND-PLIQISSFDRP-NIRYMLMEK------------ 220 (523)
T ss_dssp SCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCS-CEEEECCCCCT-TEEEEEEEC------------
T ss_pred CccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCC-CeEEeCCCCCC-ceEEEEEeC------------
Confidence 55555543 3444 468999999999764 56677775321 11222222222 111100000
Q ss_pred ccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCC
Q 001047 363 HMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 442 (1174)
Q Consensus 363 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 442 (1174)
......++..+......
T Consensus 221 ---------------------------------------------------------------~~~~~~l~~~l~~~~~~ 237 (523)
T 1oyw_A 221 ---------------------------------------------------------------FKPLDQLMRYVQEQRGK 237 (523)
T ss_dssp ---------------------------------------------------------------SSHHHHHHHHHHHTTTC
T ss_pred ---------------------------------------------------------------CCHHHHHHHHHHhcCCC
Confidence 00011122333344567
Q ss_pred CeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHh
Q 001047 443 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQ 522 (1174)
Q Consensus 443 ~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~ 522 (1174)
++||||+|++.|+.++..|...++ .+..|||+|++.+|..+++.|+
T Consensus 238 ~~IVf~~sr~~~e~l~~~L~~~g~----------------------------------~~~~~h~~l~~~~R~~~~~~f~ 283 (523)
T 1oyw_A 238 SGIIYCNSRAKVEDTAARLQSKGI----------------------------------SAAAYHAGLENNVRADVQEKFQ 283 (523)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEeCCHHHHHHHHHHHHHCCC----------------------------------CEEEecCCCCHHHHHHHHHHHH
Confidence 999999999999999999986654 6899999999999999999999
Q ss_pred cCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 523 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 523 ~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
+|.++|||||+++++|||+|++++||+ ++.|.|..+|+||+|||||.| ..|.|++++++.
T Consensus 284 ~g~~~vlVaT~a~~~GiD~p~v~~VI~--------~~~p~s~~~y~Qr~GRaGR~g--~~~~~~l~~~~~ 343 (523)
T 1oyw_A 284 RDDLQIVVATVAFGMGINKPNVRFVVH--------FDIPRNIESYYQETGRAGRDG--LPAEAMLFYDPA 343 (523)
T ss_dssp TTSCSEEEECTTSCTTTCCTTCCEEEE--------SSCCSSHHHHHHHHTTSCTTS--SCEEEEEEECHH
T ss_pred cCCCeEEEEechhhCCCCccCccEEEE--------ECCCCCHHHHHHHhccccCCC--CCceEEEEeCHH
Confidence 999999999999999999999999999 889999999999999999999 789999998763
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=4.9e-41 Score=396.27 Aligned_cols=331 Identities=18% Similarity=0.205 Sum_probs=150.1
Q ss_pred HHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh---cCCeEEEEcccHHHH
Q 001047 139 VKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---NQRRIFYTTPLKALS 215 (1174)
Q Consensus 139 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~---~g~rvlvl~PtraLa 215 (1174)
|.++++.+.....+.......|+|+|.++++.+++++++++++|||+|||++|.+|++..+. .+.++||++|+++|+
T Consensus 23 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~ 102 (394)
T 1fuu_A 23 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELA 102 (394)
T ss_dssp SGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHH
T ss_pred hhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHH
Confidence 45556666666666666556899999999999999999999999999999999999998765 356999999999999
Q ss_pred HHHHHHHHHHhCC--CeEEEEeCCCCCC------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccccc
Q 001047 216 NQKFREFRETFGD--NNVGLLTGDSAIN------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287 (1174)
Q Consensus 216 ~Q~~~~l~~~~g~--~~v~lltGd~~~~------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d 287 (1174)
.|+++++.+.+.. ..++.++|+.... .+++|+|+||++|.+.+.. ....+.++++||+||||++.+
T Consensus 103 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~------~~~~~~~~~~vIiDEah~~~~ 176 (394)
T 1fuu_A 103 LQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR------RRFRTDKIKMFILDEADEMLS 176 (394)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHT------TSSCCTTCCEEEEETHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHh------CCcchhhCcEEEEEChHHhhC
Confidence 9999999987643 5688888876532 2688999999999998875 344577899999999999998
Q ss_pred CCcHHHHHHHHHHCCCCccEEEEccccCCh--HHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccc
Q 001047 288 ISRGTVWEEIIIYCPKEVQIICLSATVANA--DELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 365 (1174)
Q Consensus 288 ~~~g~~~e~ii~~l~~~~qiI~LSATl~n~--~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~ 365 (1174)
..+...+..++..+++..|+++||||+++. +.+..|+. .+..+..... ... .
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~---~~~~~~~~~~-~~~----------------------~ 230 (394)
T 1fuu_A 177 SGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMR---NPVRILVKKD-ELT----------------------L 230 (394)
T ss_dssp TTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCC---SCEEEEECC----------------------------
T ss_pred CCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcC---CCeEEEecCc-ccc----------------------C
Confidence 889999999999999999999999999752 22222222 1111111000 000 0
Q ss_pred hhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHH-HhCCCCCe
Q 001047 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL-RSRDMLPA 444 (1174)
Q Consensus 366 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~~ 444 (1174)
..+...+..... .......+..+ ......++
T Consensus 231 ~~~~~~~~~~~~------------------------------------------------~~~~~~~l~~~~~~~~~~~~ 262 (394)
T 1fuu_A 231 EGIKQFYVNVEE------------------------------------------------EEYKYECLTDLYDSISVTQA 262 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEcCc------------------------------------------------hhhHHHHHHHHHhcCCCCcE
Confidence 000000000000 00000111111 11234689
Q ss_pred EEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcC
Q 001047 445 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRG 524 (1174)
Q Consensus 445 IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G 524 (1174)
||||++++.|+.+++.|...++ .+..+||+|++.+|..+++.|++|
T Consensus 263 lVf~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~~~~~~~~~r~~~~~~f~~~ 308 (394)
T 1fuu_A 263 VIFCNTRRKVEELTTKLRNDKF----------------------------------TVSAIYSDLPQQERDTIMKEFRSG 308 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEECCHHHHHHHHHHHHHcCC----------------------------------eEEEeeCCCCHHHHHHHHHHHHCC
Confidence 9999999999999998875443 588899999999999999999999
Q ss_pred CceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 525 LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 525 ~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
.++|||||+++++|+|+|++++||+ ++.|.++.+|+||+|||||.| ..|.|++++++.+
T Consensus 309 ~~~vlv~T~~~~~Gldi~~~~~Vi~--------~~~p~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~ 367 (394)
T 1fuu_A 309 SSRILISTDLLARGIDVQQVSLVIN--------YDLPANKENYIHRIGRGGRFG--RKGVAINFVTNED 367 (394)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CCcEEEECChhhcCCCcccCCEEEE--------eCCCCCHHHHHHHcCcccCCC--CCceEEEEEchhH
Confidence 9999999999999999999999999 888999999999999999998 6899998887653
No 25
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6.7e-40 Score=389.90 Aligned_cols=303 Identities=15% Similarity=0.142 Sum_probs=231.9
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC-C
Q 001047 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG-D 228 (1174)
Q Consensus 150 ~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g-~ 228 (1174)
+.+++.++|+|+|+|.++++.+++|++++++||||||||++|+++++..+..+.++||++||++|+.|+++++.++.+ +
T Consensus 12 ~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 91 (414)
T 3oiy_A 12 SFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEK 91 (414)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCC
Confidence 346677788999999999999999999999999999999999999998888899999999999999999999999654 5
Q ss_pred CeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccccc----------
Q 001047 229 NNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD---------- 287 (1174)
Q Consensus 229 ~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d---------- 287 (1174)
..++.++|+... ...++|+|+||++|.+++.. ..+.++++||+||||++.+
T Consensus 92 ~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--------~~~~~~~~iViDEaH~~~~~~~~~d~~l~ 163 (414)
T 3oiy_A 92 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--------LSQKRFDFVFVDDVDAVLKASRNIDTLLM 163 (414)
T ss_dssp CCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--------HTTCCCSEEEESCHHHHHHCHHHHHHHHH
T ss_pred ceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--------hccccccEEEEeChHhhhhccchhhhHHh
Confidence 679999998865 23489999999999877653 2356899999999998763
Q ss_pred -CCcHHH-HHHHHHHCC-----------CCccEEEEcccc-CCh--HHH-HHHHhcccCceeeecCCCCccccEEeeccc
Q 001047 288 -ISRGTV-WEEIIIYCP-----------KEVQIICLSATV-ANA--DEL-AGWIGQIHGKTELITSSRRPVPLTWYFSTK 350 (1174)
Q Consensus 288 -~~~g~~-~e~ii~~l~-----------~~~qiI~LSATl-~n~--~~~-~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~ 350 (1174)
.+|... +..++..++ .+.|+++||||+ ++. ..+ ..++.. .+......+..+.+.+...
T Consensus 164 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~ 238 (414)
T 3oiy_A 164 MVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNF-----TVGRLVSVARNITHVRISS 238 (414)
T ss_dssp HTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSC-----CSSCCCCCCCSEEEEEESS
T ss_pred hcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhcc-----CcCccccccccchheeecc
Confidence 345455 777777766 789999999994 432 122 222210 0000000000011110000
Q ss_pred ccccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHH
Q 001047 351 TALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 430 (1174)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 430 (1174)
.....+.
T Consensus 239 -------------------------------------------------------------------------~~~~~l~ 245 (414)
T 3oiy_A 239 -------------------------------------------------------------------------RSKEKLV 245 (414)
T ss_dssp -------------------------------------------------------------------------CCHHHHH
T ss_pred -------------------------------------------------------------------------CHHHHHH
Confidence 0011122
Q ss_pred HHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhcccee-EecCCC
Q 001047 431 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVA-AHHAGC 509 (1174)
Q Consensus 431 ~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~-~~Hsgl 509 (1174)
+++.. ...++||||++++.|+.++..|...++ .+. .+||.
T Consensus 246 ~~l~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~~h~~- 286 (414)
T 3oiy_A 246 ELLEI----FRDGILIFAQTEEEGKELYEYLKRFKF----------------------------------NVGETWSEF- 286 (414)
T ss_dssp HHHHH----HCSSEEEEESSHHHHHHHHHHHHHTTC----------------------------------CEEESSSCH-
T ss_pred HHHHH----cCCCEEEEECCHHHHHHHHHHHHHcCC----------------------------------ceehhhcCc-
Confidence 23332 237899999999999999999986654 566 78884
Q ss_pred CHHHHHHHHHHHhcCCceEEEe----chhhhhcCCcCC-ceEEEecccccCCCCccc--cCHHHHHHhhcccCCCCCC--
Q 001047 510 LPIWKSFIEELFQRGLVKVVFA----TETLAAGINMPA-RTAVLSSLSKRTASGRIQ--LTSNELFQMAGRAGRRGID-- 580 (1174)
Q Consensus 510 ~~~~R~~v~~~F~~G~ikVLVA----T~tla~GIDiP~-v~vVI~~~~k~~~~~~~p--~s~~~y~Qr~GRAGR~G~d-- 580 (1174)
.|+ ++.|++|.++|||| |+++++|||+|+ +++||+ ++.| .++.+|+||+|||||.|.+
T Consensus 287 ---~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~--------~~~p~~~~~~~y~qr~GR~gR~g~~~~ 353 (414)
T 3oiy_A 287 ---EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF--------WGTPSGPDVYTYIQASGRSSRILNGVL 353 (414)
T ss_dssp ---HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE--------ESCCTTTCHHHHHHHHGGGCCEETTEE
T ss_pred ---chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEE--------ECCCCCCCHHHHHHHhCccccCCCCCC
Confidence 444 99999999999999 999999999999 999999 8899 8999999999999999976
Q ss_pred CccEEEEEeC
Q 001047 581 NRGHVVLVQT 590 (1174)
Q Consensus 581 ~~G~~ill~~ 590 (1174)
..|.+++++.
T Consensus 354 ~~g~~i~~~~ 363 (414)
T 3oiy_A 354 VKGVSVIFEE 363 (414)
T ss_dssp CCEEEEEECC
T ss_pred cceEEEEEEc
Confidence 5899999983
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-40 Score=402.72 Aligned_cols=327 Identities=18% Similarity=0.210 Sum_probs=217.0
Q ss_pred CCcCChHHHhhcCCCCCCHHHHHHHHHHHcC--CcEEEEccCCcchHHHHHHHHHHHHhcC---CeEEEEcccHHHHHHH
Q 001047 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRG--SSVVVSAPTSSGKTLIAEAAAVATVANQ---RRIFYTTPLKALSNQK 218 (1174)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g--~~vlv~apTGsGKTlv~~~~il~~l~~g---~rvlvl~PtraLa~Q~ 218 (1174)
+.....+.+...+...|+++|.+|++.++++ ++++++||||||||++|+++++..+..+ .++||++|+++|+.|+
T Consensus 126 l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~ 205 (508)
T 3fho_A 126 XXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQI 205 (508)
T ss_dssp -------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHH
T ss_pred cccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHH
Confidence 3334444555555557999999999999998 9999999999999999999999887653 4899999999999999
Q ss_pred HHHHHHHhCCCe--EEEEeCCCC---CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccccc-CCcHH
Q 001047 219 FREFRETFGDNN--VGLLTGDSA---INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD-ISRGT 292 (1174)
Q Consensus 219 ~~~l~~~~g~~~--v~lltGd~~---~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d-~~~g~ 292 (1174)
++++.+.++... +....++.. ...+++|+|+||++|.+++.. ....+.++++|||||||++.+ ..+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~------~~~~~~~~~lIIiDEaH~~~~~~~~~~ 279 (508)
T 3fho_A 206 MDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKR------RQLDARDIKVFVLDEADNMLDQQGLGD 279 (508)
T ss_dssp HHHHHHHSTTSSCCEEC----------CCCCSEEEECHHHHHHHHHT------TCSCCTTCCEEEECCHHHHTTC--CHH
T ss_pred HHHHHHhCCccCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHc------CCccccCCCEEEEechhhhcccCCcHH
Confidence 999999765432 333333322 223789999999999998875 344578899999999999987 57888
Q ss_pred HHHHHHHHCCCCccEEEEccccCC-hHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhh
Q 001047 293 VWEEIIIYCPKEVQIICLSATVAN-ADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 371 (1174)
Q Consensus 293 ~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 371 (1174)
.+..+...++++.|+|+||||+++ .+.+..++.. ....+....+..+... + . ..
T Consensus 280 ~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~-----------~-------~----~~ 334 (508)
T 3fho_A 280 QSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAP---NANEIRLKTEELSVEG-----------I-------K----QL 334 (508)
T ss_dssp HHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHST---TCEEECCCCCC----C-----------C-------C----CE
T ss_pred HHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcC---CCeEEEeccccCCccc-----------c-------e----EE
Confidence 899999999999999999999986 4555554432 1111111111000000 0 0 00
Q ss_pred hhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHH-HhCCCCCeEEEecC
Q 001047 372 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL-RSRDMLPAIWFIFN 450 (1174)
Q Consensus 372 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~~IVF~~s 450 (1174)
+.. . .........+..+ .....+++||||++
T Consensus 335 ~~~--------------------------------------~----------~~~~~k~~~l~~ll~~~~~~~~LVF~~s 366 (508)
T 3fho_A 335 YMD--------------------------------------C----------QSEEHKYNVLVELYGLLTIGQSIIFCKK 366 (508)
T ss_dssp EEE--------------------------------------C------------CHHHHHHHHHHHC---CCCEEEBCSS
T ss_pred EEE--------------------------------------C----------CchHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 000 0 0000111222222 22355799999999
Q ss_pred HHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEE
Q 001047 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVF 530 (1174)
Q Consensus 451 r~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLV 530 (1174)
++.|+.++..|...++ ++..|||+|++.+|..+++.|++|.++|||
T Consensus 367 ~~~a~~l~~~L~~~~~----------------------------------~v~~~hg~~~~~~R~~il~~f~~g~~~VLV 412 (508)
T 3fho_A 367 KDTAEEIARRMTADGH----------------------------------TVACLTGNLEGAQRDAIMDSFRVGTSKVLV 412 (508)
T ss_dssp TTTTTHHHHHHTTTTC----------------------------------CCCEEC-----CTTGGGTHHHHSSSCCCCE
T ss_pred HHHHHHHHHHHHhCCC----------------------------------cEEEEeCCCCHHHHHHHHHHHHCCCCeEEE
Confidence 9999999999876554 789999999999999999999999999999
Q ss_pred echhhhhcCCcCCceEEEecccccCCCCccc------cCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 531 ATETLAAGINMPARTAVLSSLSKRTASGRIQ------LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 531 AT~tla~GIDiP~v~vVI~~~~k~~~~~~~p------~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
||+++++|||+|++++||+ ++.| .++.+|+||+|||||.| ..|.|++++++.+
T Consensus 413 aT~~l~~GiDip~v~~VI~--------~~~p~~~~~~~s~~~~~Qr~GRagR~g--~~g~~i~l~~~~~ 471 (508)
T 3fho_A 413 TTNVIARGIDVSQVNLVVN--------YDMPLDQAGRPDPQTYLHRIGRTGRFG--RVGVSINFVHDKK 471 (508)
T ss_dssp ECC-----CCCTTCCEEEC------------CC-----CTHHHHHTTSCCC-------CEEEEEECTTT
T ss_pred eCChhhcCCCccCCCEEEE--------ECCCCcccCCCCHHHHHHHhhhcCCCC--CCcEEEEEEeChH
Confidence 9999999999999999998 6666 78999999999999999 7899998887544
No 27
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=9.3e-38 Score=385.59 Aligned_cols=386 Identities=17% Similarity=0.187 Sum_probs=192.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHHHhC--C
Q 001047 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN-----QRRIFYTTPLKALSNQKFREFRETFG--D 228 (1174)
Q Consensus 156 ~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~-----g~rvlvl~PtraLa~Q~~~~l~~~~g--~ 228 (1174)
..++|+|+|.++++.++.|+++++++|||+|||++|++|+++.+.. +.++||++||++|+.|+++++.+.+. +
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 4678999999999999999999999999999999999999998875 77999999999999999999999875 5
Q ss_pred CeEEEEeCCCCCCC-------CCcEEEEcHHHHHHHHhcccccccCCC-CCCceeEEEEccccccccCCcHHHH-HHHHH
Q 001047 229 NNVGLLTGDSAINR-------EAQILIMTTEILRNMLYQSVGMVSSES-GLFDVDVIVLDEVHYLSDISRGTVW-EEIII 299 (1174)
Q Consensus 229 ~~v~lltGd~~~~~-------~~~IlV~Tpe~L~~~L~~~~~~~~~~~-~l~~v~lVIiDEaH~l~d~~~g~~~-e~ii~ 299 (1174)
..++.++|+..... +++|+|+||++|.+++.. ... .+.++++|||||||++.+......+ ...+.
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~------~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 157 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED------GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 157 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHS------SSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHH
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHh------CcccccccCCEEEEECCcccCCcchHHHHHHHHHH
Confidence 78999999886443 589999999999999875 233 5789999999999999876543222 12222
Q ss_pred H-C---CCCccEEEEccccC--ChHHHHHHHhccc------CceeeecCCCC--------ccccEEeecccccccccccc
Q 001047 300 Y-C---PKEVQIICLSATVA--NADELAGWIGQIH------GKTELITSSRR--------PVPLTWYFSTKTALLPLLDE 359 (1174)
Q Consensus 300 ~-l---~~~~qiI~LSATl~--n~~~~~~~l~~~~------~~~~~i~~~~r--------pvpl~~~~~~~~~~~~~~~~ 359 (1174)
. + ++..++|+||||++ |..++.+|+.... +...+...... ..|..............+..
T Consensus 158 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (556)
T 4a2p_A 158 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 237 (556)
T ss_dssp HHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHH
T ss_pred hhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHH
Confidence 1 1 45689999999995 4455565554321 10111111100 11111111000000000000
Q ss_pred cccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCccccccccc--------ccc-h---------------
Q 001047 360 KGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQH--------QLS-K--------------- 415 (1174)
Q Consensus 360 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~-~--------------- 415 (1174)
....+...+ ..++.. .+....... ......+......+... .+. .
T Consensus 238 ~~~~~~~~~-~~~~~~------~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (556)
T 4a2p_A 238 IISNLMSET-EALMRT------IYSVDTLSQ----NSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTE 306 (556)
T ss_dssp HHHHHHHHH-HHHHHH------HCC-------------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHH------Hhhhhhhhc----ccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 000000000 000000 000000000 00000000000000000 000 0
Q ss_pred ------------------hhhhhh---------------------------------------hhcCchhHHHHHHHH-H
Q 001047 416 ------------------NSINAI---------------------------------------RRSQVPQVIDTLWHL-R 437 (1174)
Q Consensus 416 ------------------~~~~~~---------------------------------------~~~~~~~~~~~l~~l-~ 437 (1174)
.....+ .......+.+.+... .
T Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~ 386 (556)
T 4a2p_A 307 HLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR 386 (556)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhc
Confidence 000000 000111122222221 1
Q ss_pred hCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHH
Q 001047 438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 517 (1174)
Q Consensus 438 ~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v 517 (1174)
..+..++||||+++..++.++..|....-.. . . ........+...+||+|++.+|..+
T Consensus 387 ~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~---------------~-~------~~~~~~g~~~~~~~~~~~~~~R~~~ 444 (556)
T 4a2p_A 387 YNPQTRTLLFAKTRALVSALKKCMEENPILN---------------Y-I------KPGVLMGRGRRDQTTGMTLPSQKGV 444 (556)
T ss_dssp HCTTCCEEEEESSHHHHHHHHHHHTTCSGGG---------------S-C------CEEC---------------------
T ss_pred CCCCceEEEEEccHHHHHHHHHHHHhCCCcc---------------e-e------eeeEEEccCCcccccccCHHHHHHH
Confidence 2566899999999999999999997541000 0 0 0001112356778999999999999
Q ss_pred HHHHhc-CCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 518 EELFQR-GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 518 ~~~F~~-G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
++.|++ |.++|||||+++++|||+|++++||+ ++.|.|+..|+||+|| ||. ..|.++++.++.
T Consensus 445 ~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~--------~d~p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~ 508 (556)
T 4a2p_A 445 LDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL--------YEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKT 508 (556)
T ss_dssp ---------CCEEEEEC-----------CEEEE--------ETCCSCHHHHHHC------------CCEEEEESCH
T ss_pred HHHhcccCceEEEEEcCchhcCCCchhCCEEEE--------eCCCCCHHHHHHhcCC-CCC---CCceEEEEEeCc
Confidence 999999 99999999999999999999999999 8999999999999999 998 589999998764
No 28
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=9.4e-37 Score=376.24 Aligned_cols=394 Identities=14% Similarity=0.160 Sum_probs=216.6
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHHHhC--CC
Q 001047 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN-----QRRIFYTTPLKALSNQKFREFRETFG--DN 229 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~-----g~rvlvl~PtraLa~Q~~~~l~~~~g--~~ 229 (1174)
+++|+|+|.++++.++.|+++++++|||+|||++|++|+++.+.. +.++||++||++|+.|+++++.+.+. +.
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 578999999999999999999999999999999999999998875 77999999999999999999999875 56
Q ss_pred eEEEEeCCCCCCC-------CCcEEEEcHHHHHHHHhcccccccCCC-CCCceeEEEEccccccccCCc-HHHHHHHHHH
Q 001047 230 NVGLLTGDSAINR-------EAQILIMTTEILRNMLYQSVGMVSSES-GLFDVDVIVLDEVHYLSDISR-GTVWEEIIIY 300 (1174)
Q Consensus 230 ~v~lltGd~~~~~-------~~~IlV~Tpe~L~~~L~~~~~~~~~~~-~l~~v~lVIiDEaH~l~d~~~-g~~~e~ii~~ 300 (1174)
.++.++|+..... +++|+|+||++|.+++... .. .+.++++|||||||++.+... ...+...+..
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~------~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 155 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNG------AIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDH 155 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTS------SSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHH
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcC------cccccccCCEEEEECccccCCcchHHHHHHHHHHh
Confidence 7999999886554 4899999999999988752 23 578899999999999986532 2222222222
Q ss_pred -C----CCCccEEEEccccCCh---------HHHHHHHhcccCceeeecCC--------CCccccEEeeccccccccccc
Q 001047 301 -C----PKEVQIICLSATVANA---------DELAGWIGQIHGKTELITSS--------RRPVPLTWYFSTKTALLPLLD 358 (1174)
Q Consensus 301 -l----~~~~qiI~LSATl~n~---------~~~~~~l~~~~~~~~~i~~~--------~rpvpl~~~~~~~~~~~~~~~ 358 (1174)
+ .+..++++||||+++. +.+.......... .+.... +...|...+..........+.
T Consensus 156 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T 3tbk_A 156 KLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDAS-VIATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234 (555)
T ss_dssp HTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCS-EEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH
T ss_pred hhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCe-eeeccccCHHHHHhhcCCCceEEEEecCcccChHH
Confidence 1 2568999999999642 1222111211111 111111 111111111111000000000
Q ss_pred ccccccchhhhhhhhh--------cccccCCCccCC----CccccccccccCCCCCcc--------cc------------
Q 001047 359 EKGKHMNRKLSLNYLQ--------LSTSEVKPYKDG----GSRRRNSRKHADMNSNNI--------VT------------ 406 (1174)
Q Consensus 359 ~~~~~~~~~l~~~~l~--------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~------------ 406 (1174)
.....+...+ ..++. ........+... +................. ..
T Consensus 235 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 313 (555)
T 3tbk_A 235 CIISQLMKET-EKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDA 313 (555)
T ss_dssp HHHHHHHHHH-HHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 00000 000000000000 000000000000000000 00
Q ss_pred -----------------cc----cccccchhh-------------hhhh------hhcCchhHHHHHHHHH-hCCCCCeE
Q 001047 407 -----------------SF----GQHQLSKNS-------------INAI------RRSQVPQVIDTLWHLR-SRDMLPAI 445 (1174)
Q Consensus 407 -----------------~~----~~~~l~~~~-------------~~~~------~~~~~~~~~~~l~~l~-~~~~~~~I 445 (1174)
.+ ....+.... .... .......+.+++..+. ..+..++|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~l 393 (555)
T 3tbk_A 314 LIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTI 393 (555)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEE
Confidence 00 000000000 0000 0011122233333322 23568999
Q ss_pred EEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhc-C
Q 001047 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR-G 524 (1174)
Q Consensus 446 VF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~-G 524 (1174)
|||+++..++.++..|...+.... + ........+...+||+|++.+|..+++.|++ |
T Consensus 394 VF~~~~~~~~~l~~~L~~~~~~~~----------------~------~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g 451 (555)
T 3tbk_A 394 LFVKTRALVDALKKWIEENPALSF----------------L------KPGILTGRGRTNRATGMTLPAQKCVLEAFRASG 451 (555)
T ss_dssp EECSSHHHHHHHHHHHHHCGGGTT----------------C------CEEECCC--------------------------
T ss_pred EEeCcHHHHHHHHHHHhhCcCcCc----------------e------eeeEEEecCCcccccccCHHHHHHHHHHHhcCC
Confidence 999999999999999986542000 0 0000112356778999999999999999999 9
Q ss_pred CceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 525 LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 525 ~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
.++|||||+++++|||+|++++||+ ++.|.|+..|+||+|| ||. ..|.+++++++.
T Consensus 452 ~~~vLvaT~~~~~GlDlp~v~~VI~--------~d~p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~ 507 (555)
T 3tbk_A 452 DNNILIATSVADEGIDIAECNLVIL--------YEYVGNVIKMIQTRGR-GRA---RDSKCFLLTSSA 507 (555)
T ss_dssp CCSEEEECCCTTCCEETTSCSEEEE--------ESCCSSCCCEECSSCC-CTT---TSCEEEEEESCH
T ss_pred CeeEEEEcchhhcCCccccCCEEEE--------eCCCCCHHHHHHhcCc-CcC---CCceEEEEEcCC
Confidence 9999999999999999999999999 8899999999999999 887 689999998764
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-35 Score=359.34 Aligned_cols=383 Identities=19% Similarity=0.197 Sum_probs=242.8
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHHhCC--CeEEEE
Q 001047 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKFREFRETFGD--NNVGLL 234 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~~~l~~~~g~--~~v~ll 234 (1174)
++|+|+|.++++.++.+ ++++++|||+|||++++.++...+. .+.++||++|+++|+.|+++++.+.++. ..++.+
T Consensus 8 ~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~ 86 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVAL 86 (494)
T ss_dssp HCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEE
T ss_pred CCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEe
Confidence 57999999999999998 9999999999999999999887765 6789999999999999999999998752 378999
Q ss_pred eCCCCCC------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEE
Q 001047 235 TGDSAIN------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQII 308 (1174)
Q Consensus 235 tGd~~~~------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI 308 (1174)
+|+.... ..++|+|+||+.|.+.+.. ....+.++++||+||||++.+......+...+....+..+++
T Consensus 87 ~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~------~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l 160 (494)
T 1wp9_A 87 TGEKSPEERSKAWARAKVIVATPQTIENDLLA------GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVI 160 (494)
T ss_dssp CSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT------TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEE
T ss_pred eCCcchhhhhhhccCCCEEEecHHHHHHHHhc------CCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEE
Confidence 9987543 3689999999999998875 234577899999999999986544444445555556688999
Q ss_pred EEccccCC-hHHHHHHHhcccCceeeecCCCCccccEEeeccccccccc--ccccccccchhhh---hhhhh-c-ccccC
Q 001047 309 CLSATVAN-ADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPL--LDEKGKHMNRKLS---LNYLQ-L-STSEV 380 (1174)
Q Consensus 309 ~LSATl~n-~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~--~~~~~~~~~~~l~---~~~l~-~-~~~~~ 380 (1174)
+||||+.+ ...+.+++.........+.....+.-. .++......... .......+...+. ...+. . ...-.
T Consensus 161 ~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
T 1wp9_A 161 GLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVR-PYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLL 239 (494)
T ss_dssp EEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTG-GGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred EEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHH-HhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999974 456666665544322222222211100 000000000000 0000000000000 00000 0 00000
Q ss_pred CCccCCCcccc---------ccccccCCCCCccccc----------------cccc-----------------------c
Q 001047 381 KPYKDGGSRRR---------NSRKHADMNSNNIVTS----------------FGQH-----------------------Q 412 (1174)
Q Consensus 381 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~----------------~~~~-----------------------~ 412 (1174)
..+........ ..........+..... .... .
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (494)
T 1wp9_A 240 ESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEI 319 (494)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhh
Confidence 00000000000 0000000000000000 0000 0
Q ss_pred cchhhhhh------------hhhcCchhHHHHHHHHHh-CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHH
Q 001047 413 LSKNSINA------------IRRSQVPQVIDTLWHLRS-RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL 479 (1174)
Q Consensus 413 l~~~~~~~------------~~~~~~~~~~~~l~~l~~-~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~ 479 (1174)
........ ........+.+++..... ....++||||+++..++.+++.|...++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~------------- 386 (494)
T 1wp9_A 320 FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI------------- 386 (494)
T ss_dssp HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTC-------------
T ss_pred hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCC-------------
Confidence 00000000 000011222333333221 4678999999999999999999986554
Q ss_pred HHHHhhCCccchhhHHhhhccceeEecC--------CCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecc
Q 001047 480 KRFRILYPDAVREPAIKGLLKGVAAHHA--------GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 551 (1174)
Q Consensus 480 ~~~~~~~~~~~~~~l~~~L~~gv~~~Hs--------gl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~ 551 (1174)
.+..+|| +|++.+|+.+++.|++|.++|||||+++++|||+|++++||+
T Consensus 387 ---------------------~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~-- 443 (494)
T 1wp9_A 387 ---------------------KAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF-- 443 (494)
T ss_dssp ---------------------CEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEE--
T ss_pred ---------------------CcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEE--
Confidence 5788888 999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 552 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 552 ~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
++.|.++..|+||+|||||.|. |.++++.++..
T Consensus 444 ------~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t 476 (494)
T 1wp9_A 444 ------YEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGT 476 (494)
T ss_dssp ------SSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTS
T ss_pred ------eCCCCCHHHHHHHHhhccCCCC---ceEEEEEecCC
Confidence 8899999999999999999983 99998887754
No 30
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=385.57 Aligned_cols=382 Identities=16% Similarity=0.215 Sum_probs=221.7
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcC------CeEEEEcccHHHHHHH-HHHHHHHhCC-
Q 001047 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ------RRIFYTTPLKALSNQK-FREFRETFGD- 228 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g------~rvlvl~PtraLa~Q~-~~~l~~~~g~- 228 (1174)
.++|+|+|.++++.+++|+++|+++|||+|||++|++|++..+..+ +++||++|+++|+.|+ +++|.+.++.
T Consensus 5 ~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~ 84 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW 84 (699)
T ss_dssp --CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTT
T ss_pred CCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcC
Confidence 4789999999999999999999999999999999999998877543 7899999999999999 9999998876
Q ss_pred CeEEEEeCCCCCC-------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCC-cHHHHHHHHHH
Q 001047 229 NNVGLLTGDSAIN-------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDIS-RGTVWEEIIIY 300 (1174)
Q Consensus 229 ~~v~lltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~-~g~~~e~ii~~ 300 (1174)
..++.++|+.... ..++|+|+||++|.+++............+.++++|||||||++.... +.......+..
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~ 164 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQ 164 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHh
Confidence 7899999987655 368999999999999885321000123467789999999999986432 22333322221
Q ss_pred ----C---------CCCccEEEEccccCCh---------HHHHHHHhcccCceeeecCCCC--------ccccEEeeccc
Q 001047 301 ----C---------PKEVQIICLSATVANA---------DELAGWIGQIHGKTELITSSRR--------PVPLTWYFSTK 350 (1174)
Q Consensus 301 ----l---------~~~~qiI~LSATl~n~---------~~~~~~l~~~~~~~~~i~~~~r--------pvpl~~~~~~~ 350 (1174)
. .+.+++|+||||+.+. +.+...+...... .+...... +.|...+....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~-~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 165 KLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAF-TIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCS-CCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCC-EEEeecCchHHHhhhcCCCceEEEEcc
Confidence 1 1567999999999862 2333333222210 11111110 11111111100
Q ss_pred ccccccccccccccchhhhhhhhhcccccCCCccC----CCccc--cccccccCCCC---------Cc------------
Q 001047 351 TALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD----GGSRR--RNSRKHADMNS---------NN------------ 403 (1174)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~---------~~------------ 403 (1174)
......+......+...+ ..++.... ...+.. .+... ........... +.
T Consensus 244 ~~~~~~~~~~l~~l~~~i-~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (699)
T 4gl2_A 244 ATREDPFKEKLLEIMTRI-QTYCQMSP--MSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMI 320 (699)
T ss_dssp -----CHHHHHHHHHHHH-HHHHTCCC--CSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred cccCChHHHHHHHHHHHH-HHHhccCc--chhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000000000 00000000 000000 00000 00000000000 00
Q ss_pred ----cccc-----------------ccccccchhh--h-----------hhh------hhcCchhHHHHHHH-HHhCC-C
Q 001047 404 ----IVTS-----------------FGQHQLSKNS--I-----------NAI------RRSQVPQVIDTLWH-LRSRD-M 441 (1174)
Q Consensus 404 ----~~~~-----------------~~~~~l~~~~--~-----------~~~------~~~~~~~~~~~l~~-l~~~~-~ 441 (1174)
.... .....+.... . ..+ .......+.+.+.. +...+ .
T Consensus 321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~ 400 (699)
T 4gl2_A 321 DAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEES 400 (699)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 0000 0000000000 0 000 01122333444444 33334 6
Q ss_pred CCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCC--------CCHHH
Q 001047 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG--------CLPIW 513 (1174)
Q Consensus 442 ~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsg--------l~~~~ 513 (1174)
.++||||++++.++.+++.|....... .....+.++||+ |++.+
T Consensus 401 ~~~IVF~~s~~~~~~l~~~L~~~~~l~----------------------------~~g~~~~~lhg~~~~~~~~~~~~~e 452 (699)
T 4gl2_A 401 ARGIIFTKTRQSAYALSQWITENEKFA----------------------------EVGVKAHHLIGAGHSSEFKPMTQNE 452 (699)
T ss_dssp CCEEEECSCHHHHHHHHHHHHSSCSCC---------------------------------CEECCCSCCCTTCCCCCHHH
T ss_pred CcEEEEECcHHHHHHHHHHHHhCcccc----------------------------ccCcceEEEECCCCccCCCCCCHHH
Confidence 899999999999999999998541100 001257889999 99999
Q ss_pred HHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCC
Q 001047 514 KSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578 (1174)
Q Consensus 514 R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G 578 (1174)
|..+++.|++|.++|||||+++++|||+|++++||+ ++.|.|+..|+||+|||||.|
T Consensus 453 R~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~--------~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 453 QKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIR--------YGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp HHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEE--------ESCCCCHHHHHHHHTTSCSSS
T ss_pred HHHHHHHHhcCCCcEEEEccccccCCccccCCEEEE--------eCCCCCHHHHHHHcCCCCCCC
Confidence 999999999999999999999999999999999999 899999999999999987765
No 31
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.6e-35 Score=380.08 Aligned_cols=395 Identities=15% Similarity=0.169 Sum_probs=197.4
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHHHhC--CC
Q 001047 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN-----QRRIFYTTPLKALSNQKFREFRETFG--DN 229 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~-----g~rvlvl~PtraLa~Q~~~~l~~~~g--~~ 229 (1174)
.+.|+|+|.++++.++.|+++++++|||+|||++|++|++..+.. ++++||++||++|+.|++.+|.+.++ +.
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCc
Confidence 458999999999999999999999999999999999999998876 77999999999999999999999875 57
Q ss_pred eEEEEeCCCCCCC-------CCcEEEEcHHHHHHHHhcccccccCCC-CCCceeEEEEccccccccCCcHHH-HHHHHHH
Q 001047 230 NVGLLTGDSAINR-------EAQILIMTTEILRNMLYQSVGMVSSES-GLFDVDVIVLDEVHYLSDISRGTV-WEEIIIY 300 (1174)
Q Consensus 230 ~v~lltGd~~~~~-------~~~IlV~Tpe~L~~~L~~~~~~~~~~~-~l~~v~lVIiDEaH~l~d~~~g~~-~e~ii~~ 300 (1174)
.++.++|+...+. +++|+|+||++|.+++... .. .+.++++|||||||++.+...... +...+..
T Consensus 326 ~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~------~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~ 399 (797)
T 4a2q_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG------TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (797)
T ss_dssp CEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS------SCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHH
T ss_pred eEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhc------cccccccCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 8999999886543 6899999999999988752 23 578899999999999987543222 2222222
Q ss_pred ----CCCCccEEEEccccCC--hHH-------HHHHHhcccCceeeecCCCC--------ccccEEeecccccccccccc
Q 001047 301 ----CPKEVQIICLSATVAN--ADE-------LAGWIGQIHGKTELITSSRR--------PVPLTWYFSTKTALLPLLDE 359 (1174)
Q Consensus 301 ----l~~~~qiI~LSATl~n--~~~-------~~~~l~~~~~~~~~i~~~~r--------pvpl~~~~~~~~~~~~~~~~ 359 (1174)
..+..++|+||||++. ... +......... ..+...... ..|...+..........+..
T Consensus 400 ~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~-~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (797)
T 4a2q_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDI-QAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (797)
T ss_dssp HHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTC-SEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHH
T ss_pred hhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCC-cEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHH
Confidence 1456899999999953 222 2221111111 111111110 00111110000000000000
Q ss_pred cccccchh---hhhhhhhc---ccccCCCccCC----CccccccccccCCCCCc--------ccc---------------
Q 001047 360 KGKHMNRK---LSLNYLQL---STSEVKPYKDG----GSRRRNSRKHADMNSNN--------IVT--------------- 406 (1174)
Q Consensus 360 ~~~~~~~~---l~~~~l~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--------~~~--------------- 406 (1174)
....+... +...++.. .......+... +................ ...
T Consensus 479 ~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 558 (797)
T 4a2q_A 479 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (797)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 00000000 00000000 00000000000 00000000000000000 000
Q ss_pred --------------c----ccccccchhhh-------------hhh------hhcCchhHHHHHHH-HHhCCCCCeEEEe
Q 001047 407 --------------S----FGQHQLSKNSI-------------NAI------RRSQVPQVIDTLWH-LRSRDMLPAIWFI 448 (1174)
Q Consensus 407 --------------~----~~~~~l~~~~~-------------~~~------~~~~~~~~~~~l~~-l~~~~~~~~IVF~ 448 (1174)
. .....+..... ... .......+...+.. +......++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~ 638 (797)
T 4a2q_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (797)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEE
T ss_pred hccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 0 00000000000 000 00011112222222 1225668999999
Q ss_pred cCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhc-CCce
Q 001047 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR-GLVK 527 (1174)
Q Consensus 449 ~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~-G~ik 527 (1174)
+++..++.++..|....-... . ........+...+||+|++.+|..+++.|++ |.++
T Consensus 639 ~~~~~~~~L~~~L~~~~~~~~--------------------~--~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~ 696 (797)
T 4a2q_A 639 KTRALVSALKKCMEENPILNY--------------------I--KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 696 (797)
T ss_dssp SSHHHHHHHHHHHHTCSTTCS--------------------C--CCEEC----------------------------CCS
T ss_pred CcHHHHHHHHHHHHhCccccc--------------------c--cceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce
Confidence 999999999999975321000 0 0001122356778999999999999999999 9999
Q ss_pred EEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 528 VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 528 VLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
|||||+++++|||+|++++||+ ++.|.|+..|+||+|| ||. ..|.|+++.++.
T Consensus 697 vLVaT~~~~~GIDlp~v~~VI~--------yd~p~s~~~~iQr~GR-GR~---~~g~~i~l~~~~ 749 (797)
T 4a2q_A 697 LLIATSVADEGIDIVQCNLVVL--------YEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKT 749 (797)
T ss_dssp EEEEECC-------CCCSEEEE--------ESCCSCHHHHHTC-----------CCCEEEEECCH
T ss_pred EEEEcCchhcCCCchhCCEEEE--------eCCCCCHHHHHHhcCC-CCC---CCceEEEEEeCC
Confidence 9999999999999999999999 8999999999999999 998 589999998764
No 32
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=5.3e-36 Score=390.86 Aligned_cols=272 Identities=14% Similarity=0.133 Sum_probs=203.3
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHh-CC
Q 001047 150 DELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETF-GD 228 (1174)
Q Consensus 150 ~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~-g~ 228 (1174)
+.+...++|+|+|+|.++++.+++|++++++||||||||++|+.+++..+..+.++||++||++|+.|+++++.++. .+
T Consensus 69 ~~~~~~~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~ 148 (1104)
T 4ddu_A 69 SFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEK 148 (1104)
T ss_dssp HHHHHHSSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCC
Confidence 34566778899999999999999999999999999999999999999888889999999999999999999999932 13
Q ss_pred CeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccccc----------
Q 001047 229 NNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD---------- 287 (1174)
Q Consensus 229 ~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d---------- 287 (1174)
..++.++|+.+. +..++|+|+||++|.+++.. ..+.++++|||||||++.+
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--------l~~~~l~~lViDEaH~l~~~~r~~Dr~L~ 220 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--------LSQKRFDFVFVDDVDAVLKASRNIDTLLM 220 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--------HHTSCCSEEEESCHHHHTTSSHHHHHHHH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--------hcccCcCEEEEeCCCccccccccchhhhH
Confidence 479999998875 23489999999999877653 2356899999999998764
Q ss_pred -CCcHHH-HHHHHHHCC-----------CCccEEEEcccc-CCh---HHHHHHHhcccCceeeecCCCCccccEEeeccc
Q 001047 288 -ISRGTV-WEEIIIYCP-----------KEVQIICLSATV-ANA---DELAGWIGQIHGKTELITSSRRPVPLTWYFSTK 350 (1174)
Q Consensus 288 -~~~g~~-~e~ii~~l~-----------~~~qiI~LSATl-~n~---~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~ 350 (1174)
.+|... +..++..++ .+.|+++||||+ ++. ..+..++. ..+......+..+.+.+...
T Consensus 221 ~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-----i~v~~~~~~~~~i~~~~~~~ 295 (1104)
T 4ddu_A 221 MVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----FTVGRLVSVARNITHVRISS 295 (1104)
T ss_dssp TSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-----CCCCBCCCCCCCEEEEEESC
T ss_pred hcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-----EEeccCCCCcCCceeEEEec
Confidence 455555 778888777 789999999995 322 12222221 01100000011111111000
Q ss_pred ccccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHH
Q 001047 351 TALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 430 (1174)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 430 (1174)
.....+.
T Consensus 296 -------------------------------------------------------------------------~k~~~L~ 302 (1104)
T 4ddu_A 296 -------------------------------------------------------------------------RSKEKLV 302 (1104)
T ss_dssp -------------------------------------------------------------------------CCHHHHH
T ss_pred -------------------------------------------------------------------------CHHHHHH
Confidence 0011122
Q ss_pred HHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhcccee-EecCCC
Q 001047 431 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVA-AHHAGC 509 (1174)
Q Consensus 431 ~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~-~~Hsgl 509 (1174)
.++.. ...++||||++++.|+.++..|...++ .+. .+||
T Consensus 303 ~ll~~----~~~~~LVF~~s~~~a~~l~~~L~~~g~----------------------------------~~~~~lhg-- 342 (1104)
T 4ddu_A 303 ELLEI----FRDGILIFAQTEEEGKELYEYLKRFKF----------------------------------NVGETWSE-- 342 (1104)
T ss_dssp HHHHH----HCSSEEEEESSSHHHHHHHHHHHHTTC----------------------------------CEEESSSS--
T ss_pred HHHHh----cCCCEEEEECcHHHHHHHHHHHHhCCC----------------------------------CeeeEecC--
Confidence 22322 237999999999999999999987665 576 8888
Q ss_pred CHHHHHHHHHHHhcCCceEEEe----chhhhhcCCcCC-ceEEEecc
Q 001047 510 LPIWKSFIEELFQRGLVKVVFA----TETLAAGINMPA-RTAVLSSL 551 (1174)
Q Consensus 510 ~~~~R~~v~~~F~~G~ikVLVA----T~tla~GIDiP~-v~vVI~~~ 551 (1174)
.|.. ++.|++|.++|||| |+++++|||+|+ +++||+.+
T Consensus 343 ---~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d 385 (1104)
T 4ddu_A 343 ---FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWG 385 (1104)
T ss_dssp ---HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEES
T ss_pred ---cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEEC
Confidence 2555 99999999999999 999999999999 99999943
No 33
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.1e-35 Score=377.35 Aligned_cols=397 Identities=16% Similarity=0.174 Sum_probs=201.3
Q ss_pred HhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcC-----CeEEEEcccHHHHHHHHHHHHHHh
Q 001047 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ-----RRIFYTTPLKALSNQKFREFRETF 226 (1174)
Q Consensus 152 l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g-----~rvlvl~PtraLa~Q~~~~l~~~~ 226 (1174)
+.....+.|+++|.++++.++.|+++|+++|||+|||++|++|+++.+..+ +++||++||++|+.|+++++.+.+
T Consensus 6 l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~ 85 (696)
T 2ykg_A 6 TNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYF 85 (696)
T ss_dssp -CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred ccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 445556689999999999999999999999999999999999999877643 789999999999999999999987
Q ss_pred C--CCeEEEEeCCCCCC-------CCCcEEEEcHHHHHHHHhcccccccCCC-CCCceeEEEEccccccccCCcHH-HHH
Q 001047 227 G--DNNVGLLTGDSAIN-------REAQILIMTTEILRNMLYQSVGMVSSES-GLFDVDVIVLDEVHYLSDISRGT-VWE 295 (1174)
Q Consensus 227 g--~~~v~lltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~-~l~~v~lVIiDEaH~l~d~~~g~-~~e 295 (1174)
+ +..++.++|+.... .+++|+|+||++|.+++... .. .+.++++|||||||++.+..... .+.
T Consensus 86 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~------~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 86 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG------TIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp TTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTT------SSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred ccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcC------cccccccccEEEEeCCCcccCcccHHHHHH
Confidence 5 56799999987643 36899999999999998752 23 57889999999999998653222 222
Q ss_pred HHHHH-----CCCCccEEEEccccCC------h---HHHHHHHhcccCceeeecCCCC---------ccccEEeeccccc
Q 001047 296 EIIIY-----CPKEVQIICLSATVAN------A---DELAGWIGQIHGKTELITSSRR---------PVPLTWYFSTKTA 352 (1174)
Q Consensus 296 ~ii~~-----l~~~~qiI~LSATl~n------~---~~~~~~l~~~~~~~~~i~~~~r---------pvpl~~~~~~~~~ 352 (1174)
..+.. .++..++|+||||+.+ . +.+...+.... ...+..... ..|...+......
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~--~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 237 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLD--ASVIATVKHNLEELEQVVYKPQKFFRKVESR 237 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTT--CCEEECCCTTHHHHHHHSCCCEEEEEECCCC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcC--CceEeecccchHHHHhhcCCCceeEEecCcc
Confidence 22221 2467899999999963 1 22222222111 111111111 0111111000000
Q ss_pred cccccccccccc---chhhhhhhhhcccccCCCccCCCccccc------------ccc-cc-CCCCCccc----------
Q 001047 353 LLPLLDEKGKHM---NRKLSLNYLQLSTSEVKPYKDGGSRRRN------------SRK-HA-DMNSNNIV---------- 405 (1174)
Q Consensus 353 ~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~~~~~~~~~~------------~~~-~~-~~~~~~~~---------- 405 (1174)
...++......+ ...+...++.... ...... ....... ... .. ........
T Consensus 238 ~~~~fs~~~~~l~~~i~~l~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 315 (696)
T 2ykg_A 238 ISDKFKYIIAQLMRDTESLAKRICKDLE-NLSQIQ-NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSH 315 (696)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHSTTGG-GSSSCC-SCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHH-Hhhccc-cccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHH
Confidence 000000000000 0000001110000 000000 0000000 000 00 00000000
Q ss_pred ----------c-cc----------------cccccchhhhh-------------hh------hhcCchhHHHHHHHHH-h
Q 001047 406 ----------T-SF----------------GQHQLSKNSIN-------------AI------RRSQVPQVIDTLWHLR-S 438 (1174)
Q Consensus 406 ----------~-~~----------------~~~~l~~~~~~-------------~~------~~~~~~~~~~~l~~l~-~ 438 (1174)
. .. ........... .+ .......+.+++.... .
T Consensus 316 l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~ 395 (696)
T 2ykg_A 316 LRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL 395 (696)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcc
Confidence 0 00 00000000000 00 0001112222222221 1
Q ss_pred CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHH
Q 001047 439 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 518 (1174)
Q Consensus 439 ~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~ 518 (1174)
.+..++||||+++..|+.+++.|...+....- ........+...+||+|++.+|..++
T Consensus 396 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~----------------------~~~~l~G~~~~~~h~~~~~~eR~~v~ 453 (696)
T 2ykg_A 396 NPETITILFVKTRALVDALKNWIEGNPKLSFL----------------------KPGILTGRGKTNQNTGMTLPAQKCIL 453 (696)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHCTTCCSC----------------------CEEC----------------------
T ss_pred CCCCcEEEEeCcHHHHHHHHHHHHhCCCcccc----------------------ceeEEEccCCCccccCCCHHHHHHHH
Confidence 25678999999999999999999876521100 00001122445558899999999999
Q ss_pred HHHhc-CCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 519 ELFQR-GLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 519 ~~F~~-G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
+.|++ |.++|||||+++++|||+|++++||+ ++.|.++..|+||+|| ||. ..|.|+++.+..
T Consensus 454 ~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~--------~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~ 516 (696)
T 2ykg_A 454 DAFKASGDHNILIATSVADEGIDIAQCNLVIL--------YEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNA 516 (696)
T ss_dssp -------CCSCSEEEESSCCC---CCCSEEEE--------ESCC--CCCC-------------CCCEEEEEESCH
T ss_pred HHHHhcCCccEEEEechhhcCCcCccCCEEEE--------eCCCCCHHHHHHhhcc-CcC---CCceEEEEecCC
Confidence 99998 99999999999999999999999999 8899999999999999 997 579999888763
No 34
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-35 Score=373.09 Aligned_cols=311 Identities=18% Similarity=0.241 Sum_probs=220.3
Q ss_pred ChHHHhhcCCCCCCHHHHHHHHHHHcC------CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHH
Q 001047 148 DVDELASIYDFRIDKFQRSSIEAFLRG------SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFRE 221 (1174)
Q Consensus 148 ~~~~l~~~~~~~~~~~Q~~ai~~ll~g------~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~ 221 (1174)
....+...++|.|+++|.++++.++++ .+++++||||||||++|++|++..+..|.+++|++||++|+.|+++.
T Consensus 357 ~~~~~~~~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~ 436 (780)
T 1gm5_A 357 LAEEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRR 436 (780)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHH
Confidence 345667778999999999999998865 59999999999999999999999999999999999999999999999
Q ss_pred HHHHhC--CCeEEEEeCCCCCC-----------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccC
Q 001047 222 FRETFG--DNNVGLLTGDSAIN-----------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI 288 (1174)
Q Consensus 222 l~~~~g--~~~v~lltGd~~~~-----------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~ 288 (1174)
+.+.++ +.++++++|+.... ..++|+|+||+.+.+ ...+.++++||+||+|+++..
T Consensus 437 l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----------~~~~~~l~lVVIDEaHr~g~~ 505 (780)
T 1gm5_A 437 TVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----------DVHFKNLGLVIIDEQHRFGVK 505 (780)
T ss_dssp HHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----------CCCCSCCCEEEEESCCCC---
T ss_pred HHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----------hhhccCCceEEecccchhhHH
Confidence 999886 46899999987532 358999999997754 235779999999999997533
Q ss_pred CcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecC-CCCccccEEeecccccccccccccccccchh
Q 001047 289 SRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS-SRRPVPLTWYFSTKTALLPLLDEKGKHMNRK 367 (1174)
Q Consensus 289 ~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~-~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~ 367 (1174)
.+ ..+......+++++||||+. ++.++..+.... ...++.. .....|+..++..
T Consensus 506 qr-----~~l~~~~~~~~vL~mSATp~-p~tl~~~~~g~~-~~s~i~~~p~~r~~i~~~~~~------------------ 560 (780)
T 1gm5_A 506 QR-----EALMNKGKMVDTLVMSATPI-PRSMALAFYGDL-DVTVIDEMPPGRKEVQTMLVP------------------ 560 (780)
T ss_dssp -------CCCCSSSSCCCEEEEESSCC-CHHHHHHHTCCS-SCEEECCCCSSCCCCEECCCC------------------
T ss_pred HH-----HHHHHhCCCCCEEEEeCCCC-HHHHHHHHhCCc-ceeeeeccCCCCcceEEEEec------------------
Confidence 22 12222345689999999974 344443322110 1111110 0000011110000
Q ss_pred hhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEE
Q 001047 368 LSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWF 447 (1174)
Q Consensus 368 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF 447 (1174)
. .....+...+.... ..+.+++||
T Consensus 561 -----------------------------------------------~--------~~~~~l~~~i~~~l-~~g~qvlVf 584 (780)
T 1gm5_A 561 -----------------------------------------------M--------DRVNEVYEFVRQEV-MRGGQAFIV 584 (780)
T ss_dssp -----------------------------------------------S--------STHHHHHHHHHHHT-TTSCCBCCB
T ss_pred -----------------------------------------------c--------chHHHHHHHHHHHH-hcCCcEEEE
Confidence 0 00111222222222 245689999
Q ss_pred ecCHHHHH--------HHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 448 IFNRRGCD--------AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 448 ~~sr~~~~--------~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
|++...++ .+++.|... .++ ..+++.+||+|++.+|+.+++
T Consensus 585 ~~~ie~se~l~~~~a~~l~~~L~~~--------------------~~~-----------~~~v~~lHG~m~~~eR~~v~~ 633 (780)
T 1gm5_A 585 YPLIEESDKLNVKSAVEMYEYLSKE--------------------VFP-----------EFKLGLMHGRLSQEEKDRVML 633 (780)
T ss_dssp CCCC--------CHHHHHHHSGGGS--------------------CC--------------CBCCCCSSSCCSCSHHHHH
T ss_pred ecchhhhhhhhHHHHHHHHHHHHhh--------------------hcC-----------CCcEEEEeCCCCHHHHHHHHH
Confidence 99765543 222222210 011 137999999999999999999
Q ss_pred HHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccc-cCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-LTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p-~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
.|++|.++|||||+++++|||+|++++||+ ++.+ .+...|.||+||+||.| ..|.|++++++
T Consensus 634 ~F~~G~~~ILVaT~vie~GIDiP~v~~VIi--------~d~~r~~l~~l~Qr~GRaGR~g--~~g~~ill~~~ 696 (780)
T 1gm5_A 634 EFAEGRYDILVSTTVIEVGIDVPRANVMVI--------ENPERFGLAQLHQLRGRVGRGG--QEAYCFLVVGD 696 (780)
T ss_dssp HHTTTSSSBCCCSSCCCSCSCCTTCCEEEB--------CSCSSSCTTHHHHHHHTSCCSS--TTCEEECCCCS
T ss_pred HHHCCCCeEEEECCCCCccccCCCCCEEEE--------eCCCCCCHHHHHHHhcccCcCC--CCCEEEEEECC
Confidence 999999999999999999999999999999 6665 36788999999999998 78999998874
No 35
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.7e-34 Score=379.18 Aligned_cols=310 Identities=20% Similarity=0.275 Sum_probs=233.5
Q ss_pred CChHHHhhcCCCCCCHHHHHHHHHHHc----CC--cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHH
Q 001047 147 IDVDELASIYDFRIDKFQRSSIEAFLR----GS--SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFR 220 (1174)
Q Consensus 147 ~~~~~l~~~~~~~~~~~Q~~ai~~ll~----g~--~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~ 220 (1174)
.....+...++|.++|+|.+|++.++. ++ ++++++|||+|||++|+.+++..+..+++++|++||++|++|+++
T Consensus 591 ~~~~~~~~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~ 670 (1151)
T 2eyq_A 591 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 670 (1151)
T ss_dssp HHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHH
Confidence 344567788999999999999999886 65 999999999999999999999888899999999999999999999
Q ss_pred HHHHHhCC--CeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccccc
Q 001047 221 EFRETFGD--NNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287 (1174)
Q Consensus 221 ~l~~~~g~--~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d 287 (1174)
.|.+.|+. ..++.++|.... +...+|+|+||+.|.. ...+.++++|||||||++
T Consensus 671 ~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~-----------~~~~~~l~lvIiDEaH~~-- 737 (1151)
T 2eyq_A 671 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS-----------DVKFKDLGLLIVDEEHRF-- 737 (1151)
T ss_dssp HHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS-----------CCCCSSEEEEEEESGGGS--
T ss_pred HHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC-----------CccccccceEEEechHhc--
Confidence 99998864 468888875432 2368999999986632 345789999999999995
Q ss_pred CCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecC-CCCccccEEeecccccccccccccccccch
Q 001047 288 ISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS-SRRPVPLTWYFSTKTALLPLLDEKGKHMNR 366 (1174)
Q Consensus 288 ~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~-~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~ 366 (1174)
+....+.+..++.++++++||||+. +..+...+..... ..++.. .....++..++...
T Consensus 738 ---g~~~~~~l~~l~~~~~vl~lSATp~-p~~l~~~~~~~~~-~~~i~~~~~~r~~i~~~~~~~---------------- 796 (1151)
T 2eyq_A 738 ---GVRHKERIKAMRANVDILTLTATPI-PRTLNMAMSGMRD-LSIIATPPARRLAVKTFVREY---------------- 796 (1151)
T ss_dssp ---CHHHHHHHHHHHTTSEEEEEESSCC-CHHHHHHHTTTSE-EEECCCCCCBCBCEEEEEEEC----------------
T ss_pred ---ChHHHHHHHHhcCCCCEEEEcCCCC-hhhHHHHHhcCCC-ceEEecCCCCccccEEEEecC----------------
Confidence 4445566666677899999999974 3334433332211 111111 01111111111000
Q ss_pred hhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHH-HHHHHHhCCCCCeE
Q 001047 367 KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID-TLWHLRSRDMLPAI 445 (1174)
Q Consensus 367 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~l~~l~~~~~~~~I 445 (1174)
. ...+.. ++..+ ..+++++
T Consensus 797 -----------------------------------------------~-----------~~~i~~~il~~l--~~g~qvl 816 (1151)
T 2eyq_A 797 -----------------------------------------------D-----------SMVVREAILREI--LRGGQVY 816 (1151)
T ss_dssp -----------------------------------------------C-----------HHHHHHHHHHHH--TTTCEEE
T ss_pred -----------------------------------------------C-----------HHHHHHHHHHHH--hcCCeEE
Confidence 0 001111 11222 2457899
Q ss_pred EEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCC
Q 001047 446 WFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGL 525 (1174)
Q Consensus 446 VF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ 525 (1174)
|||+++..|+.+++.|.... | ..++.++||+|++.+|+.++..|++|.
T Consensus 817 vf~~~v~~~~~l~~~L~~~~---------------------p-----------~~~v~~lhg~~~~~eR~~il~~F~~g~ 864 (1151)
T 2eyq_A 817 YLYNDVENIQKAAERLAELV---------------------P-----------EARIAIGHGQMRERELERVMNDFHHQR 864 (1151)
T ss_dssp EECCCSSCHHHHHHHHHHHC---------------------T-----------TSCEEECCSSCCHHHHHHHHHHHHTTS
T ss_pred EEECCHHHHHHHHHHHHHhC---------------------C-----------CCeEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 99999999999998886431 0 126999999999999999999999999
Q ss_pred ceEEEechhhhhcCCcCCceEEEecccccCCCCcc-ccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 526 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRI-QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 526 ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~-p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
++|||||+++++|||+|++++||. ++. +.+...|+||+||+||.| ..|.|++++.+.
T Consensus 865 ~~VLVaT~v~e~GiDip~v~~VIi--------~~~~~~~l~~l~Qr~GRvgR~g--~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 865 FNVLVCTTIIETGIDIPTANTIII--------ERADHFGLAQLHQLRGRVGRSH--HQAYAWLLTPHP 922 (1151)
T ss_dssp CCEEEESSTTGGGSCCTTEEEEEE--------TTTTSSCHHHHHHHHTTCCBTT--BCEEEEEEECCG
T ss_pred CcEEEECCcceeeecccCCcEEEE--------eCCCCCCHHHHHHHHhccCcCC--CceEEEEEECCc
Confidence 999999999999999999999987 444 468889999999999998 789999888653
No 36
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.7e-34 Score=365.04 Aligned_cols=346 Identities=18% Similarity=0.157 Sum_probs=245.8
Q ss_pred HHHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHH-cCCcEEEEccCCcchHHHHHHHHHHHH-hc--CCeEEEEccc
Q 001047 136 CNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFL-RGSSVVVSAPTSSGKTLIAEAAAVATV-AN--QRRIFYTTPL 211 (1174)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll-~g~~vlv~apTGsGKTlv~~~~il~~l-~~--g~rvlvl~Pt 211 (1174)
...|..+++++...+.+.... ..|++.|+++|+.++ .+++++++||||||||++....++... .. +.+++|++|+
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~ 149 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPR 149 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESC
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCch
Confidence 345666777766677777766 467778888887766 557899999999999994333333322 12 6689999999
Q ss_pred HHHHHHHHHHHHHHhCCC---eEEE-EeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc-cc
Q 001047 212 KALSNQKFREFRETFGDN---NVGL-LTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY-LS 286 (1174)
Q Consensus 212 raLa~Q~~~~l~~~~g~~---~v~l-ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~-l~ 286 (1174)
++|+.|+++.+...++.. .+|. +..+.....+++|+|+|||++.+++.. ...+.++++|||||+|. ..
T Consensus 150 r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~-------~~~l~~~~~lIlDEah~R~l 222 (773)
T 2xau_A 150 RVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAME-------DHDLSRYSCIILDEAHERTL 222 (773)
T ss_dssp HHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHH-------STTCTTEEEEEECSGGGCCH
T ss_pred HHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhh-------CccccCCCEEEecCcccccc
Confidence 999999999998877532 2332 222333456889999999999988764 34688999999999996 44
Q ss_pred cCCc-HHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccc
Q 001047 287 DISR-GTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMN 365 (1174)
Q Consensus 287 d~~~-g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~ 365 (1174)
+... ...+..+.... ++.|+|+||||+ +.+.++.|+.. +.++....+..|+..++.....
T Consensus 223 d~d~~~~~l~~l~~~~-~~~~iIl~SAT~-~~~~l~~~~~~----~~vi~v~gr~~pv~~~~~~~~~------------- 283 (773)
T 2xau_A 223 ATDILMGLLKQVVKRR-PDLKIIIMSATL-DAEKFQRYFND----APLLAVPGRTYPVELYYTPEFQ------------- 283 (773)
T ss_dssp HHHHHHHHHHHHHHHC-TTCEEEEEESCS-CCHHHHHHTTS----CCEEECCCCCCCEEEECCSSCC-------------
T ss_pred chHHHHHHHHHHHHhC-CCceEEEEeccc-cHHHHHHHhcC----CCcccccCcccceEEEEecCCc-------------
Confidence 4322 23444444444 578999999999 67889999863 4556667777777765532110
Q ss_pred hhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHH-HhCCCCCe
Q 001047 366 RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHL-RSRDMLPA 444 (1174)
Q Consensus 366 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~~ 444 (1174)
.. .....+..+..+ .....+++
T Consensus 284 ~~---------------------------------------------------------~~~~~l~~l~~~~~~~~~g~i 306 (773)
T 2xau_A 284 RD---------------------------------------------------------YLDSAIRTVLQIHATEEAGDI 306 (773)
T ss_dssp SC---------------------------------------------------------HHHHHHHHHHHHHHHSCSCEE
T ss_pred hh---------------------------------------------------------HHHHHHHHHHHHHHhcCCCCE
Confidence 00 001112222222 23456899
Q ss_pred EEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHh--
Q 001047 445 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQ-- 522 (1174)
Q Consensus 445 IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~-- 522 (1174)
||||++++.|+.++..|.... ..+.. ........+.+|||+|++.+|..+++.|+
T Consensus 307 LVF~~~~~~i~~l~~~L~~~~--------------~~l~~---------~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~ 363 (773)
T 2xau_A 307 LLFLTGEDEIEDAVRKISLEG--------------DQLVR---------EEGCGPLSVYPLYGSLPPHQQQRIFEPAPES 363 (773)
T ss_dssp EEECSCHHHHHHHHHHHHHHH--------------HHHHH---------HHCCCCEEEEEECTTCCHHHHGGGGSCCCCC
T ss_pred EEECCCHHHHHHHHHHHHHHH--------------Hhhcc---------cccCCCeEEEEeCCCCCHHHHHHHHhhcccc
Confidence 999999999999999886310 00000 00001235899999999999999999999
Q ss_pred ---cCCceEEEechhhhhcCCcCCceEEEeccc----ccCCCC------ccccCHHHHHHhhcccCCCCCCCccEEEEEe
Q 001047 523 ---RGLVKVVFATETLAAGINMPARTAVLSSLS----KRTASG------RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ 589 (1174)
Q Consensus 523 ---~G~ikVLVAT~tla~GIDiP~v~vVI~~~~----k~~~~~------~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~ 589 (1174)
+|.++|||||+++++|||+|++++||+.+. .|+... ..|.|..+|+||+|||||. ..|.||.++
T Consensus 364 ~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~ 440 (773)
T 2xau_A 364 HNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLY 440 (773)
T ss_dssp SSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESS
T ss_pred cCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEe
Confidence 999999999999999999999999999543 122211 1289999999999999998 589999998
Q ss_pred CC
Q 001047 590 TP 591 (1174)
Q Consensus 590 ~~ 591 (1174)
++
T Consensus 441 ~~ 442 (773)
T 2xau_A 441 TE 442 (773)
T ss_dssp CH
T ss_pred cH
Confidence 65
No 37
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=6.2e-34 Score=352.20 Aligned_cols=303 Identities=21% Similarity=0.270 Sum_probs=223.1
Q ss_pred HHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC-----CC
Q 001047 169 EAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAIN-----RE 243 (1174)
Q Consensus 169 ~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~-----~~ 243 (1174)
...+++++++++||||||||+.+ +..+...++.+|++|||+||.|+++++.+. | ..+++++|+.... ..
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~a----l~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~-g-~~v~lltG~~~~iv~TpGr~ 223 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYHA----IQKYFSAKSGVYCGPLKLLAHEIFEKSNAA-G-VPCDLVTGEERVTVQPNGKQ 223 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHHH----HHHHHHSSSEEEEESSHHHHHHHHHHHHHT-T-CCEEEECSSCEECCSTTCCC
T ss_pred HHhcCCCEEEEEcCCCCCHHHHH----HHHHHhcCCeEEEeCHHHHHHHHHHHHHhc-C-CcEEEEECCeeEEecCCCcc
Confidence 34568899999999999999833 334444466799999999999999999884 3 5699999987543 23
Q ss_pred CcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCC-CCccEEEEccccCChHHHHH
Q 001047 244 AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP-KEVQIICLSATVANADELAG 322 (1174)
Q Consensus 244 ~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~-~~~qiI~LSATl~n~~~~~~ 322 (1174)
.+++++|++.+. ....+++|||||||++.+.+|+..|+.++..++ ...+++++|||.+....+..
T Consensus 224 ~~il~~T~e~~~--------------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~ 289 (677)
T 3rc3_A 224 ASHVSCTVEMCS--------------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMY 289 (677)
T ss_dssp CSEEEEEGGGCC--------------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHH
T ss_pred cceeEecHhHhh--------------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHH
Confidence 778889886431 346889999999999999999999999999888 78999999999754444444
Q ss_pred HHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCC
Q 001047 323 WIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSN 402 (1174)
Q Consensus 323 ~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1174)
+.+ ....+....++.|+...... + ..
T Consensus 290 ~~~----~~~~v~~~~r~~~l~~~~~~------------------l--~~------------------------------ 315 (677)
T 3rc3_A 290 TTG----EEVEVRDYKRLTPISVLDHA------------------L--ES------------------------------ 315 (677)
T ss_dssp HHT----CCEEEEECCCSSCEEECSSC------------------C--CS------------------------------
T ss_pred hcC----CceEEEEeeecchHHHHHHH------------------H--HH------------------------------
Confidence 432 12222222333332211000 0 00
Q ss_pred cccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHH
Q 001047 403 NIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF 482 (1174)
Q Consensus 403 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~ 482 (1174)
+.. -....||||++++.|+.++..|...++
T Consensus 316 ---------------------------------l~~-~~~g~iIf~~s~~~ie~la~~L~~~g~---------------- 345 (677)
T 3rc3_A 316 ---------------------------------LDN-LRPGDCIVCFSKNDIYSVSRQIEIRGL---------------- 345 (677)
T ss_dssp ---------------------------------GGG-CCTTEEEECSSHHHHHHHHHHHHHTTC----------------
T ss_pred ---------------------------------HHh-cCCCCEEEEcCHHHHHHHHHHHHhcCC----------------
Confidence 000 013468999999999999999976543
Q ss_pred HhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhc--CCceEEEechhhhhcCCcCCceEEEecc-cccC----
Q 001047 483 RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR--GLVKVVFATETLAAGINMPARTAVLSSL-SKRT---- 555 (1174)
Q Consensus 483 ~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~--G~ikVLVAT~tla~GIDiP~v~vVI~~~-~k~~---- 555 (1174)
++++|||+|++.+|..+++.|++ |.++|||||+++++|||+ .+++||+.+ .+++
T Consensus 346 ------------------~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~ 406 (677)
T 3rc3_A 346 ------------------ESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEK 406 (677)
T ss_dssp ------------------CCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC------
T ss_pred ------------------CeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccC
Confidence 79999999999999999999999 999999999999999999 677777744 3331
Q ss_pred -CCCccccCHHHHHHhhcccCCCCCC-CccEEEEEeCCCCCHHHHHHHhhCCCcceee-eeccc
Q 001047 556 -ASGRIQLTSNELFQMAGRAGRRGID-NRGHVVLVQTPYEGAEECCKLLFAGVEPLVS-QFTAS 616 (1174)
Q Consensus 556 -~~~~~p~s~~~y~Qr~GRAGR~G~d-~~G~~ill~~~~~~~~~~~~~~~~~~~pl~S-~f~~~ 616 (1174)
+....|.|..+|+||+|||||.|.+ ..|.|++++.. +...+.+++.....++.+ .+.+.
T Consensus 407 G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~--d~~~~~~~~~~~~~~i~~~~l~p~ 468 (677)
T 3rc3_A 407 GERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE--DLSLLKEILKRPVDPIRAAGLHPT 468 (677)
T ss_dssp -----CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT--HHHHHHHHHHSCCCCCCCEEECCC
T ss_pred CccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc--hHHHHHHHHhcCcchhhhccCCCh
Confidence 1123489999999999999999966 45888877654 345677888888888876 34444
No 38
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=8e-35 Score=355.72 Aligned_cols=321 Identities=15% Similarity=0.162 Sum_probs=222.7
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCC-eEEEEcccHHHHHHHHHHHHHH--hCCCeEEE
Q 001047 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR-RIFYTTPLKALSNQKFREFRET--FGDNNVGL 233 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~-rvlvl~PtraLa~Q~~~~l~~~--~g~~~v~l 233 (1174)
++.|+|+|.+|++.+++++++++++|||+|||++|+.++...+..++ ++||++|+++|+.|++++|.++ ++...++.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEE
Confidence 45899999999999999999999999999999999999988876555 9999999999999999999875 44457888
Q ss_pred EeCCCCCC----CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEE
Q 001047 234 LTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIIC 309 (1174)
Q Consensus 234 ltGd~~~~----~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~ 309 (1174)
++|+.... ...+|+|+||+.|.+. ....+.++++|||||||++.. ..+..++..++...++++
T Consensus 191 ~~~~~~~~~~~~~~~~I~i~T~~~l~~~---------~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~ 257 (510)
T 2oca_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQ---------PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFG 257 (510)
T ss_dssp CGGGCCTTGGGCTTCSEEEEEHHHHTTS---------CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEE
T ss_pred EecCCccccccccCCcEEEEeHHHHhhc---------hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEE
Confidence 88887765 6899999999976532 123467899999999999874 457777788878889999
Q ss_pred EccccCChH----HHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccC
Q 001047 310 LSATVANAD----ELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD 385 (1174)
Q Consensus 310 LSATl~n~~----~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 385 (1174)
||||+++.. .+..+++. . ++........-..++ ........ ........ ...+. ..
T Consensus 258 lSATp~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~l-~~~~~~~~----~~~~~~~~-~~~~~-----~~---- 317 (510)
T 2oca_A 258 LSGSLRDGKANIMQYVGMFGE----I-FKPVTTSKLMEDGQV-TELKINSI----FLRYPDEF-TTKLK-----GK---- 317 (510)
T ss_dssp EESCGGGCSSCHHHHHHHHCS----E-ECCCCCC----------CCEEEEE----EEECCHHH-HHHHT-----TC----
T ss_pred EEeCCCCCcccHHHhHHhhCC----e-EEeeCHHHHhhCCcC-CCceEEEE----eecCChHH-hcccc-----cc----
Confidence 999997531 12223321 1 111000000000000 00000000 00000000 00000 00
Q ss_pred CCccccccccccCCCCCcccccccccccchhhhhhhh--hcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhh
Q 001047 386 GGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIR--RSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED 463 (1174)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~ 463 (1174)
.+. .....+. ......+.+.+......+..++|||+. .+.|+.+++.|..
T Consensus 318 --------------------------~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~ 369 (510)
T 2oca_A 318 --------------------------TYQ-EEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKN 369 (510)
T ss_dssp --------------------------CHH-HHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHT
T ss_pred --------------------------chH-HHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHH
Confidence 000 0000000 001112334444444445556677776 8888888888875
Q ss_pred cCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEec-hhhhhcCCcC
Q 001047 464 CNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFAT-ETLAAGINMP 542 (1174)
Q Consensus 464 ~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT-~tla~GIDiP 542 (1174)
.+. .+..+||+|++.+|+.+++.|++|.++||||| +++++|+|+|
T Consensus 370 ~~~----------------------------------~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip 415 (510)
T 2oca_A 370 EYD----------------------------------KVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVK 415 (510)
T ss_dssp TCS----------------------------------SEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCC
T ss_pred cCC----------------------------------CeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccc
Confidence 442 58999999999999999999999999999999 9999999999
Q ss_pred CceEEEecccccCCCCccccCHHHHHHhhcccCCCCCC
Q 001047 543 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 580 (1174)
Q Consensus 543 ~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d 580 (1174)
++++||. ++.+.++..|+||+||+||.|..
T Consensus 416 ~v~~vi~--------~~~~~s~~~~~Q~~GR~gR~g~~ 445 (510)
T 2oca_A 416 NLHHVVL--------AHGVKSKIIVLQTIGRVLRKHGS 445 (510)
T ss_dssp SEEEEEE--------SSCCCSCCHHHHHHHHHHTTTCC
T ss_pred cCcEEEE--------eCCCCCHHHHHHHHhcccccCCC
Confidence 9999999 88889999999999999999943
No 39
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.6e-34 Score=374.51 Aligned_cols=395 Identities=15% Similarity=0.174 Sum_probs=197.1
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHHHhC--CC
Q 001047 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN-----QRRIFYTTPLKALSNQKFREFRETFG--DN 229 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~-----g~rvlvl~PtraLa~Q~~~~l~~~~g--~~ 229 (1174)
.+.|+|+|.++++.+++|+++++++|||+|||++|++|++..+.. ++++||++||++|+.|++.+|.+.++ +.
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 468999999999999999999999999999999999999988765 77999999999999999999999875 57
Q ss_pred eEEEEeCCCCCCC-------CCcEEEEcHHHHHHHHhcccccccCCC-CCCceeEEEEccccccccCCc-HHHHHHHHHH
Q 001047 230 NVGLLTGDSAINR-------EAQILIMTTEILRNMLYQSVGMVSSES-GLFDVDVIVLDEVHYLSDISR-GTVWEEIIIY 300 (1174)
Q Consensus 230 ~v~lltGd~~~~~-------~~~IlV~Tpe~L~~~L~~~~~~~~~~~-~l~~v~lVIiDEaH~l~d~~~-g~~~e~ii~~ 300 (1174)
.++.++|+..... +++|+|+||++|.+++... .. .+.++++|||||||++..... ...+...+..
T Consensus 326 ~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~------~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG------TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp CEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSS------SCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred eEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcC------ccccccCCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 8999999886543 5799999999999988752 22 577899999999999986532 2222222222
Q ss_pred ----CCCCccEEEEccccCC--hHHHHHHHh-------cccCceeeecCCCC--------ccccEEeecccccccccccc
Q 001047 301 ----CPKEVQIICLSATVAN--ADELAGWIG-------QIHGKTELITSSRR--------PVPLTWYFSTKTALLPLLDE 359 (1174)
Q Consensus 301 ----l~~~~qiI~LSATl~n--~~~~~~~l~-------~~~~~~~~i~~~~r--------pvpl~~~~~~~~~~~~~~~~ 359 (1174)
..+..++++||||+.. ..++...+. ..... .+...... +.|...+..........+..
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~-~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ-AISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS-EEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred hhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCc-eeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 1456899999999952 222222211 11110 11111100 11111111100000000000
Q ss_pred cccccchh---hhhhhhhc---ccccCCCccCC----CccccccccccCCCCCc--------cccccc------------
Q 001047 360 KGKHMNRK---LSLNYLQL---STSEVKPYKDG----GSRRRNSRKHADMNSNN--------IVTSFG------------ 409 (1174)
Q Consensus 360 ~~~~~~~~---l~~~~l~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--------~~~~~~------------ 409 (1174)
....+... +...++.. .......+... +................ ......
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i 558 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 00000000 00000000 00000000000 00000000000000000 000000
Q ss_pred ---------------------ccccchhhhh-------------hhh--h-cCchhHHHHHHHHHh----CCCCCeEEEe
Q 001047 410 ---------------------QHQLSKNSIN-------------AIR--R-SQVPQVIDTLWHLRS----RDMLPAIWFI 448 (1174)
Q Consensus 410 ---------------------~~~l~~~~~~-------------~~~--~-~~~~~~~~~l~~l~~----~~~~~~IVF~ 448 (1174)
.......... ... . ...+....++..+.. ....++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~ 638 (936)
T 4a2w_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (936)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEE
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEe
Confidence 0000000000 000 0 011122222222222 3568999999
Q ss_pred cCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhc-CCce
Q 001047 449 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQR-GLVK 527 (1174)
Q Consensus 449 ~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~-G~ik 527 (1174)
++++.++.++..|....-... . ........+...+||+|++.+|..+++.|++ |.++
T Consensus 639 ~t~~~ae~L~~~L~~~~~l~~--------------------i--k~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~ 696 (936)
T 4a2w_A 639 KTRALVSALKKCMEENPILNY--------------------I--KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 696 (936)
T ss_dssp SSHHHHHHHHHHHHHCSTTSS--------------------C--CCEEC----------------------------CCS
T ss_pred CCHHHHHHHHHHHhhCccccc--------------------c--ceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCee
Confidence 999999999999985410000 0 0000112356678999999999999999999 9999
Q ss_pred EEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 528 VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 528 VLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
|||||+++++|||+|++++||+ ++.|.|+..|+||+|| ||. ..|.++++.+..
T Consensus 697 VLVaT~~~~eGIDlp~v~~VI~--------yD~p~s~~~~iQr~GR-GR~---~~g~vi~Li~~~ 749 (936)
T 4a2w_A 697 LLIATSVADEGIDIVQCNLVVL--------YEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKT 749 (936)
T ss_dssp EEEEECC------CCCCSEEEE--------ESCCSCSHHHHCC-----------CCCEEEEESCH
T ss_pred EEEEeCchhcCCcchhCCEEEE--------eCCCCCHHHHHHhcCC-CCC---CCCEEEEEEeCC
Confidence 9999999999999999999999 8999999999999999 998 589999888663
No 40
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=8.2e-35 Score=380.18 Aligned_cols=268 Identities=16% Similarity=0.121 Sum_probs=191.6
Q ss_pred HhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHHhCC--
Q 001047 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSNQKFREFRETFGD-- 228 (1174)
Q Consensus 152 l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~g~-- 228 (1174)
+...++|.| ++|.++++.+++|+|++++||||||||+ |.+|++..+ ..+.++||++||++|+.|+++.+.+.+..
T Consensus 50 ~~~~~g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~ 127 (1054)
T 1gku_B 50 FRKCVGEPR-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAG 127 (1054)
T ss_dssp HHTTTCSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 445567778 9999999999999999999999999998 777776655 46789999999999999999999987653
Q ss_pred C----eEEEEeCCCCCCC---------CCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHH
Q 001047 229 N----NVGLLTGDSAINR---------EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWE 295 (1174)
Q Consensus 229 ~----~v~lltGd~~~~~---------~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e 295 (1174)
. .++.++|+..... +++|+|+||++|.+++.+ +.++++|||||||+|.+ ++..++
T Consensus 128 i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~----------L~~l~~lViDEah~~l~--~~~~~~ 195 (1054)
T 1gku_B 128 VGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE----------LGHFDFIFVDDVDAILK--ASKNVD 195 (1054)
T ss_dssp CSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT----------SCCCSEEEESCHHHHHT--STHHHH
T ss_pred CCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH----------hccCCEEEEeChhhhhh--ccccHH
Confidence 3 6889999875422 389999999999986642 66899999999999997 678888
Q ss_pred HHHHHC-----------CCCccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeeccccccccccccccccc
Q 001047 296 EIIIYC-----------PKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM 364 (1174)
Q Consensus 296 ~ii~~l-----------~~~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~ 364 (1174)
.++..+ +...|++++|||+++...+..++........+.........+.+++..
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~--------------- 260 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVN--------------- 260 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEES---------------
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEec---------------
Confidence 888776 356889999999986532322221100000000000000001111000
Q ss_pred chhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCe
Q 001047 365 NRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPA 444 (1174)
Q Consensus 365 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 444 (1174)
...... +..+......++
T Consensus 261 ----------------------------------------------------------~~k~~~----L~~ll~~~~~~~ 278 (1054)
T 1gku_B 261 ----------------------------------------------------------DESIST----LSSILEKLGTGG 278 (1054)
T ss_dssp ----------------------------------------------------------CCCTTT----THHHHTTSCSCE
T ss_pred ----------------------------------------------------------hhHHHH----HHHHHhhcCCCE
Confidence 000001 112222224689
Q ss_pred EEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcC
Q 001047 445 IWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRG 524 (1174)
Q Consensus 445 IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G 524 (1174)
||||++++.|+.++..|... + .+.++||+| ..+++.|++|
T Consensus 279 LVF~~t~~~a~~l~~~L~~~-~----------------------------------~v~~lhg~~-----~~~l~~F~~G 318 (1054)
T 1gku_B 279 IIYARTGEEAEEIYESLKNK-F----------------------------------RIGIVTATK-----KGDYEKFVEG 318 (1054)
T ss_dssp EEEESSHHHHHHHHHTTTTS-S----------------------------------CEEECTTSS-----SHHHHHHHHT
T ss_pred EEEEcCHHHHHHHHHHHhhc-c----------------------------------CeeEEeccH-----HHHHHHHHcC
Confidence 99999999999999988643 2 689999998 4788899999
Q ss_pred CceEEEe----chhhhhcCCcCCc-eEEEec
Q 001047 525 LVKVVFA----TETLAAGINMPAR-TAVLSS 550 (1174)
Q Consensus 525 ~ikVLVA----T~tla~GIDiP~v-~vVI~~ 550 (1174)
.++|||| |+++++|||+|+| ++||+.
T Consensus 319 ~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~ 349 (1054)
T 1gku_B 319 EIDHLIGTAHYYGTLVRGLDLPERIRFAVFV 349 (1054)
T ss_dssp SCSEEEEECC------CCSCCTTTCCEEEEE
T ss_pred CCcEEEEecCCCCeeEeccccCCcccEEEEe
Confidence 9999999 9999999999996 999994
No 41
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=5.9e-34 Score=344.59 Aligned_cols=356 Identities=17% Similarity=0.102 Sum_probs=224.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEe
Q 001047 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLT 235 (1174)
Q Consensus 156 ~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~llt 235 (1174)
+++.|+|+|.++++.+++++++++++|||+|||++|+.++... +.++||++|+++|+.|++++|.+ |+...+++++
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v~~~~ 165 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFS 165 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGG-GCGGGEEEBS
T ss_pred CCCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHh-CCCcceEEEC
Confidence 4578999999999999999999999999999999999998765 78999999999999999999999 7643399999
Q ss_pred CCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEccccC
Q 001047 236 GDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 236 Gd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
|+.. ...+|+|+|++.+...+.. ...++++|||||||++.+..+.. ++..+ +..++++||||+.
T Consensus 166 g~~~--~~~~Ivv~T~~~l~~~~~~---------~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lSATp~ 229 (472)
T 2fwr_A 166 GRIK--ELKPLTVSTYDSAYVNAEK---------LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLTATFE 229 (472)
T ss_dssp SSCB--CCCSEEEEEHHHHHHTHHH---------HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEEEEESCCC
T ss_pred CCcC--CcCCEEEEEcHHHHHHHHH---------hcCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEEEEecCcc
Confidence 8765 4678999999998876542 12468999999999998766553 44444 3678999999998
Q ss_pred ChH----HHHHHHhcccCceee--ecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCcc
Q 001047 316 NAD----ELAGWIGQIHGKTEL--ITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389 (1174)
Q Consensus 316 n~~----~~~~~l~~~~~~~~~--i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 389 (1174)
+.+ .+..+++........ +...+-+ +....... ..+ ..........+...+..........+......
T Consensus 230 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 303 (472)
T 2fwr_A 230 REDGRHEILKEVVGGKVFELFPDSLAGKHLA-KYTIKRIF----VPL-AEDERVEYEKREKVYKQFLRARGITLRRAEDF 303 (472)
T ss_dssp CTTSGGGSHHHHTCCEEEECCHHHHTSCCCC-SEEECCEE----ECC-CHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSS
T ss_pred CCCCHHHHHHHHhCCeEeecCHHHHhcCcCC-CeEEEEEE----cCC-CHHHHHHHHHHHHHHHHHHHhcCccccchhhH
Confidence 543 233333321000000 0000000 00000000 000 00000000000000000000000000000000
Q ss_pred ccccccccCCCCCccccccccccc-chhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCC
Q 001047 390 RRNSRKHADMNSNNIVTSFGQHQL-SKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLD 468 (1174)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~ 468 (1174)
....... .........+ .......+..........+...+......++||||+++..++.+++.|
T Consensus 304 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l------- 369 (472)
T 2fwr_A 304 NKIVMAS-------GYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVF------- 369 (472)
T ss_dssp TTTTTTT-------CCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHT-------
T ss_pred HHHHHHh-------ccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHh-------
Confidence 0000000 0000000000 000000111111112222222233455689999999999999888776
Q ss_pred HHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEE
Q 001047 469 ECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 548 (1174)
Q Consensus 469 ~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI 548 (1174)
++..+||++++.+|+.+++.|++|.++|||||+++++|+|+|++++||
T Consensus 370 --------------------------------~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi 417 (472)
T 2fwr_A 370 --------------------------------LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGV 417 (472)
T ss_dssp --------------------------------TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEE
T ss_pred --------------------------------CcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEE
Confidence 356789999999999999999999999999999999999999999999
Q ss_pred ecccccCCCCccccCHHHHHHhhcccCCCCCC-CccEEEEEeCC
Q 001047 549 SSLSKRTASGRIQLTSNELFQMAGRAGRRGID-NRGHVVLVQTP 591 (1174)
Q Consensus 549 ~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d-~~G~~ill~~~ 591 (1174)
+ ++.|.++..|+||+|||||.|.. ....+|.+.+.
T Consensus 418 ~--------~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 418 I--------MSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp E--------ECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred E--------ECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 9 78889999999999999999965 45566655554
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.9e-34 Score=345.73 Aligned_cols=290 Identities=15% Similarity=0.144 Sum_probs=204.5
Q ss_pred CCCHHHHHHHHHHHcCCcE-EEEccCCcchHHHHHHHHHHH-HhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeC
Q 001047 159 RIDKFQRSSIEAFLRGSSV-VVSAPTSSGKTLIAEAAAVAT-VANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~v-lv~apTGsGKTlv~~~~il~~-l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltG 236 (1174)
+++|+|+ +++.+++++++ +++||||||||++|++|++.. +..+.+++|++||++|+.|+++.+. +..++...+
T Consensus 4 q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~----g~~v~~~~~ 78 (451)
T 2jlq_A 4 MGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR----GLPIRYQTP 78 (451)
T ss_dssp CCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT----TSCEEECCT
T ss_pred CCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc----Cceeeeeec
Confidence 5788875 79999988776 899999999999999998765 4567899999999999999998875 344554433
Q ss_pred CC--CCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHH-HCCCCccEEEEccc
Q 001047 237 DS--AINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIII-YCPKEVQIICLSAT 313 (1174)
Q Consensus 237 d~--~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~-~l~~~~qiI~LSAT 313 (1174)
.. ...++..|.++|++.+.+.+.. ...+.++++|||||||++ +..+...+..+.. ..+++.|+|+||||
T Consensus 79 ~~~~~~~~~~~i~~~t~~~l~~~l~~-------~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT 150 (451)
T 2jlq_A 79 AVKSDHTGREIVDLMCHATFTTRLLS-------STRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTAT 150 (451)
T ss_dssp TCSCCCCSSCCEEEEEHHHHHHHHHH-------CSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSS
T ss_pred cccccCCCCceEEEEChHHHHHHhhC-------cccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccC
Confidence 32 2335678999999999888864 356789999999999988 4444444444432 23567999999999
Q ss_pred cCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCcccccc
Q 001047 314 VANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS 393 (1174)
Q Consensus 314 l~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 393 (1174)
+++.. ..++. +...++... +++|.. .|
T Consensus 151 ~~~~~--~~~~~---~~~~~~~~~-~~~p~~-------------------------------------~~---------- 177 (451)
T 2jlq_A 151 PPGST--DPFPQ---SNSPIEDIE-REIPER-------------------------------------SW---------- 177 (451)
T ss_dssp CTTCC--CSSCC---CSSCEEEEE-CCCCSS-------------------------------------CC----------
T ss_pred CCccc--hhhhc---CCCceEecC-ccCCch-------------------------------------hh----------
Confidence 96310 00000 000000000 000000 00
Q ss_pred ccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHH
Q 001047 394 RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMS 473 (1174)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~ 473 (1174)
......+ .. ..+++||||++++.|+.++..|...++
T Consensus 178 ---------------------------------~~~~~~l---~~-~~~~~lVF~~s~~~a~~l~~~L~~~g~------- 213 (451)
T 2jlq_A 178 ---------------------------------NTGFDWI---TD-YQGKTVWFVPSIKAGNDIANCLRKSGK------- 213 (451)
T ss_dssp ---------------------------------SSSCHHH---HH-CCSCEEEECSSHHHHHHHHHHHHTTTC-------
T ss_pred ---------------------------------HHHHHHH---Hh-CCCCEEEEcCCHHHHHHHHHHHHHcCC-------
Confidence 0000111 11 246899999999999999999986554
Q ss_pred HHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccc
Q 001047 474 EVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 553 (1174)
Q Consensus 474 ~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k 553 (1174)
.+..+||.+ ++.+++.|++|.++|||||+++++|||+|+ ++||+.+..
T Consensus 214 ---------------------------~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~ 261 (451)
T 2jlq_A 214 ---------------------------RVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRC 261 (451)
T ss_dssp ---------------------------CEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEE
T ss_pred ---------------------------eEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCc
Confidence 577888865 467999999999999999999999999999 999984311
Q ss_pred ----c--CCC------CccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 554 ----R--TAS------GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 554 ----~--~~~------~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
+ ++. .+.|.|..+|+||+|||||.|. ..|.|+++...
T Consensus 262 ~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~-~~g~~~~~~~~ 310 (451)
T 2jlq_A 262 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA-QEDDQYVFSGD 310 (451)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCEEEEECSC
T ss_pred ccccccccccceeeecccccCCHHHHHHhccccCCCCC-CCccEEEEeCC
Confidence 1 110 1289999999999999999993 26788877643
No 43
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=7.5e-33 Score=340.00 Aligned_cols=362 Identities=15% Similarity=0.149 Sum_probs=235.1
Q ss_pred cCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHh--CCCeEE
Q 001047 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETF--GDNNVG 232 (1174)
Q Consensus 155 ~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~--g~~~v~ 232 (1174)
..+|.|+|+|..+++.+++|+ |+.|+||+|||++|.+|++.....|..++|++||++||.|.++.+..++ -+++++
T Consensus 79 ~lG~~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~ 156 (844)
T 1tf5_A 79 VTGMFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVG 156 (844)
T ss_dssp HHSCCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HcCCCCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 455699999999999999998 9999999999999999998655678899999999999999998887753 247899
Q ss_pred EEeCCCCCC-----CCCcEEEEcHHHH-HHHHhcccccccCCCCCCceeEEEEccccccc-cCC---------------c
Q 001047 233 LLTGDSAIN-----REAQILIMTTEIL-RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS-DIS---------------R 290 (1174)
Q Consensus 233 lltGd~~~~-----~~~~IlV~Tpe~L-~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~-d~~---------------~ 290 (1174)
++.|+.... .+++|+|+||++| .++|......-.....++.+.++||||||.|+ |.. +
T Consensus 157 ~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~ 236 (844)
T 1tf5_A 157 LNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKL 236 (844)
T ss_dssp ECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHH
T ss_pred EEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhH
Confidence 999886532 2589999999999 55554321111123457899999999999987 653 4
Q ss_pred HHHHHHHHHHCC---------CCccEE-----------------EEccccCC-hHHHHHHHhc-----cc-------Cce
Q 001047 291 GTVWEEIIIYCP---------KEVQII-----------------CLSATVAN-ADELAGWIGQ-----IH-------GKT 331 (1174)
Q Consensus 291 g~~~e~ii~~l~---------~~~qiI-----------------~LSATl~n-~~~~~~~l~~-----~~-------~~~ 331 (1174)
...+..++..++ +..|++ ++|||.+. ...+...+.. .. +.+
T Consensus 237 ~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v 316 (844)
T 1tf5_A 237 YVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQV 316 (844)
T ss_dssp HHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEE
T ss_pred HHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCee
Confidence 567777888886 367777 89999642 1222211110 00 011
Q ss_pred eeecC-CCCc-------------------ccc----------EE--eeccc---ccccccccccccccchhhhhhhhhcc
Q 001047 332 ELITS-SRRP-------------------VPL----------TW--YFSTK---TALLPLLDEKGKHMNRKLSLNYLQLS 376 (1174)
Q Consensus 332 ~~i~~-~~rp-------------------vpl----------~~--~~~~~---~~~~~~~~~~~~~~~~~l~~~~l~~~ 376 (1174)
.++.. ..|. +.+ ++ +|... .++..............+.+..+.
T Consensus 317 ~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~-- 394 (844)
T 1tf5_A 317 VIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVT-- 394 (844)
T ss_dssp EEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEE--
T ss_pred EEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEE--
Confidence 11110 0110 000 00 00000 001111110000000000000000
Q ss_pred cccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHH
Q 001047 377 TSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA 456 (1174)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~ 456 (1174)
.+.. .+..+ . . ....+. ... ......+...+.... ..+.|+||||.|+..|+.
T Consensus 395 ---IPtn---~p~~r---~--d--~~d~v~------~~~-------~~K~~al~~~i~~~~-~~~~pvLVft~s~~~se~ 447 (844)
T 1tf5_A 395 ---IPTN---RPVVR---D--D--RPDLIY------RTM-------EGKFKAVAEDVAQRY-MTGQPVLVGTVAVETSEL 447 (844)
T ss_dssp ---CCCS---SCCCC---E--E--CCCEEE------SSH-------HHHHHHHHHHHHHHH-HHTCCEEEEESCHHHHHH
T ss_pred ---ecCC---CCccc---c--c--CCcEEE------eCH-------HHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHH
Confidence 0000 00000 0 0 000000 000 011122233333222 234689999999999999
Q ss_pred HHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhh
Q 001047 457 AVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLA 536 (1174)
Q Consensus 457 la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla 536 (1174)
++..|...|+ .+..+||++.+.+|..+...|+.| .|+|||++++
T Consensus 448 Ls~~L~~~gi----------------------------------~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAg 491 (844)
T 1tf5_A 448 ISKLLKNKGI----------------------------------PHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAG 491 (844)
T ss_dssp HHHHHHTTTC----------------------------------CCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSS
T ss_pred HHHHHHHCCC----------------------------------CEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccc
Confidence 9999998776 578899999988888777777766 6999999999
Q ss_pred hcCCcC--------CceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 537 AGINMP--------ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 537 ~GIDiP--------~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
||+||+ ++.+||+ ++.|.|...|+||+||+||.| ..|.+++|.+..+
T Consensus 492 RG~DI~l~~~V~~~ggl~VIn--------~d~p~s~r~y~hr~GRTGRqG--~~G~s~~~vs~eD 546 (844)
T 1tf5_A 492 RGTDIKLGEGVKELGGLAVVG--------TERHESRRIDNQLRGRSGRQG--DPGITQFYLSMED 546 (844)
T ss_dssp TTCCCCCCTTSGGGTSEEEEE--------SSCCSSHHHHHHHHTTSSGGG--CCEEEEEEEETTS
T ss_pred cCcCccccchhhhcCCcEEEE--------ecCCCCHHHHHhhcCccccCC--CCCeEEEEecHHH
Confidence 999999 8899999 999999999999999999999 8999999988765
No 44
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=8.3e-34 Score=346.57 Aligned_cols=291 Identities=19% Similarity=0.139 Sum_probs=213.8
Q ss_pred HhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeE
Q 001047 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNV 231 (1174)
Q Consensus 152 l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v 231 (1174)
+.....++++++|..+++.+.++++++++||||||||++|.+++++ ++.+++|++|||+|+.|+++.+.+.++. .+
T Consensus 210 l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---~g~~vLVl~PTReLA~Qia~~l~~~~g~-~v 285 (666)
T 3o8b_A 210 METTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---QGYKVLVLNPSVAATLGFGAYMSKAHGI-DP 285 (666)
T ss_dssp HHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHHHSC-CC
T ss_pred hhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---CCCeEEEEcchHHHHHHHHHHHHHHhCC-Ce
Confidence 3333344566677777777888899999999999999999998876 4779999999999999999999988874 47
Q ss_pred EEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCcc--EEE
Q 001047 232 GLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ--IIC 309 (1174)
Q Consensus 232 ~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~q--iI~ 309 (1174)
+...|+.....+++|+|+||++|.. . ....+.++++|||||||++ +..+...+..++..++...+ +++
T Consensus 286 g~~vG~~~~~~~~~IlV~TPGrLl~---~------~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~llil 355 (666)
T 3o8b_A 286 NIRTGVRTITTGAPVTYSTYGKFLA---D------GGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGARLVVL 355 (666)
T ss_dssp EEECSSCEECCCCSEEEEEHHHHHH---T------TSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCSEEEE
T ss_pred eEEECcEeccCCCCEEEECcHHHHh---C------CCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCceEEE
Confidence 8888988888899999999999842 2 2445778999999999876 45677778888888876666 788
Q ss_pred EccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCcc
Q 001047 310 LSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 389 (1174)
Q Consensus 310 LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 389 (1174)
||||+++. + .. +.|....+.... ...+ .+. .
T Consensus 356 ~SAT~~~~------i----------~~---~~p~i~~v~~~~-------------~~~i--~~~----------~----- 386 (666)
T 3o8b_A 356 ATATPPGS------V----------TV---PHPNIEEVALSN-------------TGEI--PFY----------G----- 386 (666)
T ss_dssp EESSCTTC------C----------CC---CCTTEEEEECBS-------------CSSE--EET----------T-----
T ss_pred ECCCCCcc------c----------cc---CCcceEEEeecc-------------cchh--HHH----------H-----
Confidence 89999741 0 00 001000000000 0000 000 0
Q ss_pred ccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCH
Q 001047 390 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDE 469 (1174)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~ 469 (1174)
.... +.....+++||||++++.|+.+++.|...++
T Consensus 387 ----------------------------------~~~~--------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~--- 421 (666)
T 3o8b_A 387 ----------------------------------KAIP--------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGI--- 421 (666)
T ss_dssp ----------------------------------EEEC--------GGGSSSSEEEEECSCHHHHHHHHHHHHTTTC---
T ss_pred ----------------------------------hhhh--------hhhccCCcEEEEeCCHHHHHHHHHHHHhCCC---
Confidence 0000 0011356899999999999999999986654
Q ss_pred HhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEe
Q 001047 470 CEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 549 (1174)
Q Consensus 470 ~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~ 549 (1174)
.+..+||+|++.+ |.++..+|||||+++++|||+| +++||+
T Consensus 422 -------------------------------~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~ 462 (666)
T 3o8b_A 422 -------------------------------NAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVID 462 (666)
T ss_dssp -------------------------------CEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEE
T ss_pred -------------------------------cEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEe
Confidence 6899999999875 5567779999999999999998 999986
Q ss_pred ccccc--CCCCc-----------cccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 550 SLSKR--TASGR-----------IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 550 ~~~k~--~~~~~-----------~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
..... --+|+ .|.+..+|+||+||||| | ..|. |.|+++.+
T Consensus 463 ~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g--~~G~-i~lvt~~e 515 (666)
T 3o8b_A 463 CNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-G--RRGI-YRFVTPGE 515 (666)
T ss_dssp CCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-S--SCEE-EEESCCCC
T ss_pred cCcccccccccccccccccccccCcCCHHHHHHHhccCCC-C--CCCE-EEEEecch
Confidence 33110 00134 79999999999999999 7 7898 88887754
No 45
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1e-33 Score=349.42 Aligned_cols=290 Identities=15% Similarity=0.125 Sum_probs=214.4
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCC
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGD 237 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd 237 (1174)
.++|+|+.+++.+++|++++++||||||||++|++|+++.+. .+.++||++|||+|+.|+++.+. ...++...+.
T Consensus 171 ~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~----~~~v~~~~~~ 246 (618)
T 2whx_A 171 IGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR----GLPIRYQTPA 246 (618)
T ss_dssp CCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT----TSCEEECCTT
T ss_pred cCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc----CCceeEeccc
Confidence 567777778999999999999999999999999999987654 56799999999999999998876 3446633322
Q ss_pred --CCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCC-CCccEEEEcccc
Q 001047 238 --SAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP-KEVQIICLSATV 314 (1174)
Q Consensus 238 --~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~-~~~qiI~LSATl 314 (1174)
....++..+.++|.+.+.+.+.. ...+.++++|||||||++ +..+...+..++..++ ++.|+|+||||+
T Consensus 247 l~~~~tp~~~i~~~t~~~l~~~l~~-------~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~ 318 (618)
T 2whx_A 247 VKSDHTGREIVDLMCHATFTTRLLS-------STRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATP 318 (618)
T ss_dssp SSCCCCSSSCEEEEEHHHHHHHHHH-------CSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSC
T ss_pred ceeccCCCceEEEEChHHHHHHHhc-------cccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCC
Confidence 12345677889999998887764 345789999999999998 5677777777777664 679999999999
Q ss_pred CChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCccccccc
Q 001047 315 ANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSR 394 (1174)
Q Consensus 315 ~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 394 (1174)
++.. ..+. ......+++... ++ . ..
T Consensus 319 ~~~~--~~~~----------~~~~~~~~v~~~-------~~---~------~~--------------------------- 343 (618)
T 2whx_A 319 PGST--DPFP----------QSNSPIEDIERE-------IP---E------RS--------------------------- 343 (618)
T ss_dssp TTCC--CSSC----------CCSSCEEEEECC-------CC---S------SC---------------------------
T ss_pred chhh--hhhh----------ccCCceeeeccc-------CC---H------HH---------------------------
Confidence 7421 0000 000000000000 00 0 00
Q ss_pred cccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHH
Q 001047 395 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE 474 (1174)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~ 474 (1174)
...+. ..+.+ ..+++||||+|++.|+.+++.|...++
T Consensus 344 -------------------------------~~~ll---~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~-------- 380 (618)
T 2whx_A 344 -------------------------------WNTGF---DWITD-YQGKTVWFVPSIKAGNDIANCLRKSGK-------- 380 (618)
T ss_dssp -------------------------------CSSSC---HHHHH-CCSCEEEECSSHHHHHHHHHHHHHTTC--------
T ss_pred -------------------------------HHHHH---HHHHh-CCCCEEEEECChhHHHHHHHHHHHcCC--------
Confidence 00001 11122 246899999999999999999986654
Q ss_pred HHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEeccccc
Q 001047 475 VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554 (1174)
Q Consensus 475 i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~ 554 (1174)
.+..+||. +|..+++.|++|.++|||||+++++|||+| +++||+....+
T Consensus 381 --------------------------~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~ 429 (618)
T 2whx_A 381 --------------------------RVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCL 429 (618)
T ss_dssp --------------------------CEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEE
T ss_pred --------------------------cEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECccee
Confidence 58889974 788899999999999999999999999998 88886654321
Q ss_pred C------------CCCccccCHHHHHHhhcccCCCCCCCccEEEEEeC
Q 001047 555 T------------ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 590 (1174)
Q Consensus 555 ~------------~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~ 590 (1174)
+ -.++.|.|..+|+||+|||||.|. ..|.|+++.+
T Consensus 430 ~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~-~~G~ai~l~~ 476 (618)
T 2whx_A 430 KPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA-QEDDQYVFSG 476 (618)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCEEEEECS
T ss_pred cceecccCCCceEEcccccCCHHHHHHhccccCCCCC-CCCeEEEEcc
Confidence 1 236779999999999999999972 4789999886
No 46
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.98 E-value=9e-32 Score=320.43 Aligned_cols=277 Identities=16% Similarity=0.165 Sum_probs=188.2
Q ss_pred cCCcEEEEccCCcchHHHHHHHHH-HHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCC--CCCCCcEEEE
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAV-ATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSA--INREAQILIM 249 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il-~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~--~~~~~~IlV~ 249 (1174)
+|++++++||||||||++|++|++ ..+..+.+++|++||++|+.|+++.+. +..+++.+|... ..++..+.++
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~ 76 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR----GEPIRYMTPAVQSERTGNEIVDFM 76 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT----TSCEEEC---------CCCSEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC----CCeEEEEecCccccCCCCceEEEE
Confidence 478999999999999999999988 455677899999999999999987765 456887777532 2346678889
Q ss_pred cHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHH-CCCCccEEEEccccCChHHHHHHHhccc
Q 001047 250 TTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY-CPKEVQIICLSATVANADELAGWIGQIH 328 (1174)
Q Consensus 250 Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~-l~~~~qiI~LSATl~n~~~~~~~l~~~~ 328 (1174)
|.+.+.+.+.. ...+.++++|||||||++. ..+......+... .+.++|+|+||||+++. +
T Consensus 77 ~~~~l~~~l~~-------~~~~~~l~~vViDEaH~~~-~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~------~---- 138 (431)
T 2v6i_A 77 CHSTFTMKLLQ-------GVRVPNYNLYIMDEAHFLD-PASVAARGYIETRVSMGDAGAIFMTATPPGT------T---- 138 (431)
T ss_dssp EHHHHHHHHHH-------TCCCCCCSEEEEESTTCCS-HHHHHHHHHHHHHHHTTSCEEEEEESSCTTC------C----
T ss_pred chHHHHHHHhc-------CccccCCCEEEEeCCccCC-ccHHHHHHHHHHHhhCCCCcEEEEeCCCCcc------h----
Confidence 99988777664 3457899999999999973 2223333333332 25689999999999741 0
Q ss_pred CceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccc
Q 001047 329 GKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSF 408 (1174)
Q Consensus 329 ~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (1174)
..+... ..|+...... ++ .
T Consensus 139 ---~~~~~~--~~~i~~~~~~----~~-----------------------------~----------------------- 157 (431)
T 2v6i_A 139 ---EAFPPS--NSPIIDEETR----IP-----------------------------D----------------------- 157 (431)
T ss_dssp ---CSSCCC--SSCCEEEECC----CC-----------------------------S-----------------------
T ss_pred ---hhhcCC--CCceeecccc----CC-----------------------------H-----------------------
Confidence 000000 0011000000 00 0
Q ss_pred cccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCc
Q 001047 409 GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPD 488 (1174)
Q Consensus 409 ~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~ 488 (1174)
.....+... +. ...+++||||++++.|+.+++.|...++
T Consensus 158 ---------------~~~~~~~~~---l~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~---------------------- 196 (431)
T 2v6i_A 158 ---------------KAWNSGYEW---IT-EFDGRTVWFVHSIKQGAEIGTCLQKAGK---------------------- 196 (431)
T ss_dssp ---------------SCCSSCCHH---HH-SCSSCEEEECSSHHHHHHHHHHHHHTTC----------------------
T ss_pred ---------------HHHHHHHHH---HH-cCCCCEEEEeCCHHHHHHHHHHHHHcCC----------------------
Confidence 000000111 11 2356899999999999999999976543
Q ss_pred cchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEeccccc---------CCCCc
Q 001047 489 AVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR---------TASGR 559 (1174)
Q Consensus 489 ~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~---------~~~~~ 559 (1174)
.++.+||+ +|+.+++.|++|.++|||||+++++|||+| +..||+....+ .-.++
T Consensus 197 ------------~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~ 259 (431)
T 2v6i_A 197 ------------KVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGP 259 (431)
T ss_dssp ------------CEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEE
T ss_pred ------------eEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeeccc
Confidence 68999997 688899999999999999999999999999 54443321111 11167
Q ss_pred cccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 560 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 560 ~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
.|.+..+|+||+||+||.|. ..|.++++..+
T Consensus 260 ~p~~~~~~~Qr~GR~GR~g~-~~~~~~~~~~~ 290 (431)
T 2v6i_A 260 IAITPASAAQRRGRIGRNPE-KLGDIYAYSGN 290 (431)
T ss_dssp EECCHHHHHHHHTTSSCCTT-CCCCEEEECSC
T ss_pred ccCCHHHHHHhhhccCCCCC-CCCeEEEEcCC
Confidence 88999999999999999983 24556666543
No 47
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.98 E-value=1.4e-31 Score=327.63 Aligned_cols=365 Identities=16% Similarity=0.138 Sum_probs=218.6
Q ss_pred hhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC--CCe
Q 001047 153 ASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG--DNN 230 (1174)
Q Consensus 153 ~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g--~~~ 230 (1174)
....+..|+++|..+++.+++|+ |+.++||+|||++|.+|++.....|..++|++||++||.|.++.+..++. +++
T Consensus 68 ~R~lg~~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~ 145 (853)
T 2fsf_A 68 KRVFGMRHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLT 145 (853)
T ss_dssp HHHHSCCCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCCCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCe
Confidence 33456789999999999999998 99999999999999999987667788999999999999999988887532 468
Q ss_pred EEEEeCCCCCC-----CCCcEEEEcHHHH-HHHHhcccccccCCCCCCceeEEEEccccccc-cCC--------------
Q 001047 231 VGLLTGDSAIN-----REAQILIMTTEIL-RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS-DIS-------------- 289 (1174)
Q Consensus 231 v~lltGd~~~~-----~~~~IlV~Tpe~L-~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~-d~~-------------- 289 (1174)
++++.|+.... .+++|+|+||++| .++|......-.....++++.++|+||||.|+ |..
T Consensus 146 v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~ 225 (853)
T 2fsf_A 146 VGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSS 225 (853)
T ss_dssp EEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC-----
T ss_pred EEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccch
Confidence 99999986532 2589999999999 67776432111123557899999999999998 543
Q ss_pred -cHHHHHHHHHHCCC--------------------CccEE------------------------EEccccCC-hHHHHHH
Q 001047 290 -RGTVWEEIIIYCPK--------------------EVQII------------------------CLSATVAN-ADELAGW 323 (1174)
Q Consensus 290 -~g~~~e~ii~~l~~--------------------~~qiI------------------------~LSATl~n-~~~~~~~ 323 (1174)
+...+..++..+++ ..|++ ++|||.+. ...+...
T Consensus 226 ~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~a 305 (853)
T 2fsf_A 226 EMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAA 305 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHH
Confidence 34456666666653 34543 78998642 1111110
Q ss_pred H------hcc------cCceeeecC-CCCc-------------------c-----c-----cE--Eeecccccccccccc
Q 001047 324 I------GQI------HGKTELITS-SRRP-------------------V-----P-----LT--WYFSTKTALLPLLDE 359 (1174)
Q Consensus 324 l------~~~------~~~~~~i~~-~~rp-------------------v-----p-----l~--~~~~~~~~~~~~~~~ 359 (1174)
+ ... .+.+.++.. ..|. + . ++ .||... ..+..-
T Consensus 306 l~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y---~kl~Gm 382 (853)
T 2fsf_A 306 LRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLY---EKLAGM 382 (853)
T ss_dssp ---------------------------------------------------CCCCCEEEEEEEHHHHHTTS---SEEEEE
T ss_pred HHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhh---hhhhcC
Confidence 0 000 000000000 0000 0 0 01 011110 112322
Q ss_pred cccccch--hhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHH
Q 001047 360 KGKHMNR--KLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR 437 (1174)
Q Consensus 360 ~~~~~~~--~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 437 (1174)
.|+.... .+ ...+.......+.... ..+. .. ...+ ... .......+...+....
T Consensus 383 TGTa~te~~ef-~~iY~l~vv~IPtn~p---~~R~-----d~--~d~v--------~~~-----~~~K~~al~~~i~~~~ 438 (853)
T 2fsf_A 383 TGTADTEAFEF-SSIYKLDTVVVPTNRP---MIRK-----DL--PDLV--------YMT-----EAEKIQAIIEDIKERT 438 (853)
T ss_dssp ECTTCCCHHHH-HHHHCCEEEECCCSSC---CCCE-----EC--CCEE--------ESS-----HHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHH-HHHhCCcEEEcCCCCC---ceee-----cC--CcEE--------EeC-----HHHHHHHHHHHHHHHh
Confidence 3322211 11 1111111111110000 0000 00 0000 000 0011122222232222
Q ss_pred hCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHH
Q 001047 438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 517 (1174)
Q Consensus 438 ~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v 517 (1174)
..+.|+||||.|+..++.++..|...|+ .+.++||.+...++..+
T Consensus 439 -~~gqpvLVft~sie~se~Ls~~L~~~gi----------------------------------~~~vLnak~~~rEa~ii 483 (853)
T 2fsf_A 439 -AKGQPVLVGTISIEKSELVSNELTKAGI----------------------------------KHNVLNAKFHANEAAIV 483 (853)
T ss_dssp -TTTCCEEEEESSHHHHHHHHHHHHHTTC----------------------------------CCEECCTTCHHHHHHHH
T ss_pred -cCCCCEEEEECcHHHHHHHHHHHHHCCC----------------------------------CEEEecCChhHHHHHHH
Confidence 3457999999999999999999998776 57789999999999999
Q ss_pred HHHHhcCCceEEEechhhhhcCCcCCc-------------------------------------eEEEecccccCCCCcc
Q 001047 518 EELFQRGLVKVVFATETLAAGINMPAR-------------------------------------TAVLSSLSKRTASGRI 560 (1174)
Q Consensus 518 ~~~F~~G~ikVLVAT~tla~GIDiP~v-------------------------------------~vVI~~~~k~~~~~~~ 560 (1174)
...|+.| .|+|||++++||+||+.. .+||+ ++.
T Consensus 484 a~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~--------te~ 553 (853)
T 2fsf_A 484 AQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG--------TER 553 (853)
T ss_dssp HTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE--------SSC
T ss_pred HhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE--------ccC
Confidence 9999998 699999999999999973 69999 899
Q ss_pred ccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 561 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 561 p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
|.|...|.||+||+||.| ..|.+++|.+..+
T Consensus 554 pes~riy~qr~GRTGRqG--d~G~s~~fls~eD 584 (853)
T 2fsf_A 554 HESRRIDNQLRGRSGRQG--DAGSSRFYLSMED 584 (853)
T ss_dssp CSSHHHHHHHHTTSSGGG--CCEEEEEEEETTS
T ss_pred CCCHHHHHhhccccccCC--CCeeEEEEecccH
Confidence 999999999999999999 8999998887755
No 48
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.98 E-value=1.8e-32 Score=329.19 Aligned_cols=284 Identities=16% Similarity=0.146 Sum_probs=192.7
Q ss_pred HHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCC--CCCC
Q 001047 167 SIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSA--INRE 243 (1174)
Q Consensus 167 ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~--~~~~ 243 (1174)
....+.++++++++||||||||++|++|++..+. .+.++||++||++|++|+++.+.. ..++...+... ..+.
T Consensus 14 ~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g----~~v~~~~~~~~~~~t~~ 89 (459)
T 2z83_A 14 SPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRG----LPVRYQTSAVQREHQGN 89 (459)
T ss_dssp -CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTT----SCEEECC--------CC
T ss_pred HHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcC----ceEeEEecccccCCCCC
Confidence 3445667899999999999999999999987664 678999999999999999998862 33544443322 1345
Q ss_pred CcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHH-HCCCCccEEEEccccCChHHHHH
Q 001047 244 AQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIII-YCPKEVQIICLSATVANADELAG 322 (1174)
Q Consensus 244 ~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~-~l~~~~qiI~LSATl~n~~~~~~ 322 (1174)
..+.++|.+.+.+.+.. ...+.++++|||||||++. ..+...+..+.. ..+++.|+|+||||++..
T Consensus 90 ~~i~~~~~~~l~~~l~~-------~~~l~~~~~iViDEaH~~~-~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~----- 156 (459)
T 2z83_A 90 EIVDVMCHATLTHRLMS-------PNRVPNYNLFVMDEAHFTD-PASIAARGYIATKVELGEAAAIFMTATPPGT----- 156 (459)
T ss_dssp CSEEEEEHHHHHHHHHS-------CC-CCCCSEEEESSTTCCS-HHHHHHHHHHHHHHHTTSCEEEEECSSCTTC-----
T ss_pred cEEEEEchHHHHHHhhc-------cccccCCcEEEEECCccCC-chhhHHHHHHHHHhccCCccEEEEEcCCCcc-----
Confidence 67889999998877764 3457899999999999852 111222222211 124679999999999631
Q ss_pred HHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCC
Q 001047 323 WIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSN 402 (1174)
Q Consensus 323 ~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1174)
...+... ..|+...... .+ . ..
T Consensus 157 --------~~~~~~~--~~pi~~~~~~----~~----------~--------------~~-------------------- 178 (459)
T 2z83_A 157 --------TDPFPDS--NAPIHDLQDE----IP----------D--------------RA-------------------- 178 (459)
T ss_dssp --------CCSSCCC--SSCEEEEECC----CC----------S--------------SC--------------------
T ss_pred --------hhhhccC--CCCeEEeccc----CC----------c--------------ch--------------------
Confidence 0000000 1111100000 00 0 00
Q ss_pred cccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHH
Q 001047 403 NIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF 482 (1174)
Q Consensus 403 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~ 482 (1174)
.......+ .. ..+++||||++++.|+.++..|...++
T Consensus 179 -----------------------~~~~~~~l---~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~---------------- 215 (459)
T 2z83_A 179 -----------------------WSSGYEWI---TE-YAGKTVWFVASVKMGNEIAMCLQRAGK---------------- 215 (459)
T ss_dssp -----------------------CSSCCHHH---HH-CCSCEEEECSCHHHHHHHHHHHHHTTC----------------
T ss_pred -----------------------hHHHHHHH---Hh-cCCCEEEEeCChHHHHHHHHHHHhcCC----------------
Confidence 00000111 11 256899999999999999999986654
Q ss_pred HhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEeccccc------CC
Q 001047 483 RILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR------TA 556 (1174)
Q Consensus 483 ~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~------~~ 556 (1174)
.+..+||. +|..+++.|++|.++|||||+++++|||+|+ ++||+.+..+ ++
T Consensus 216 ------------------~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~ 272 (459)
T 2z83_A 216 ------------------KVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEG 272 (459)
T ss_dssp ------------------CEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSS
T ss_pred ------------------cEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccccc
Confidence 57888984 7888999999999999999999999999999 8999843211 11
Q ss_pred ------CCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 557 ------SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 557 ------~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
.++.|.|..+|+||+|||||.|. ..|.+++++++.
T Consensus 273 ~~~~~~~~d~p~s~~~~~QR~GRaGR~g~-~~G~~~~~~~~~ 313 (459)
T 2z83_A 273 EGRVILGNPSPITSASAAQRRGRVGRNPN-QVGDEYHYGGAT 313 (459)
T ss_dssp SCEEEECSCEECCHHHHHHHHTTSSCCTT-CCCEEEEECSCC
T ss_pred ccccccccCCCCCHHHHHHhccccCCCCC-CCCeEEEEEccc
Confidence 15689999999999999999982 278999888764
No 49
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.98 E-value=1.6e-32 Score=340.83 Aligned_cols=289 Identities=16% Similarity=0.140 Sum_probs=202.7
Q ss_pred CCCHHHH-----HHHHHHH------cCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHHh
Q 001047 159 RIDKFQR-----SSIEAFL------RGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSNQKFREFRETF 226 (1174)
Q Consensus 159 ~~~~~Q~-----~ai~~ll------~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~ 226 (1174)
.|+++|+ ++|+.++ ++++++++||||||||++|++|++..+ ..+.+++|++||++|+.|+++.+...
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~- 293 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGL- 293 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS-
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcC-
Confidence 5788888 9999887 899999999999999999999998774 46779999999999999999988752
Q ss_pred CCCeEEEEeCCC--CCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC-CC
Q 001047 227 GDNNVGLLTGDS--AINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC-PK 303 (1174)
Q Consensus 227 g~~~v~lltGd~--~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l-~~ 303 (1174)
.++...+.. ...++.-+-+++.+.+.+.+.. ...+.++++|||||||++. ..+...+..+...+ +.
T Consensus 294 ---~i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~-------~~~l~~l~lvViDEaH~~~-~~~~~~~~~l~~~~~~~ 362 (673)
T 2wv9_A 294 ---PVRYLTPAVQREHSGNEIVDVMCHATLTHRLMS-------PLRVPNYNLFVMDEAHFTD-PASIAARGYIATRVEAG 362 (673)
T ss_dssp ---CCEECCC---CCCCSCCCEEEEEHHHHHHHHHS-------SSCCCCCSEEEEESTTCCC-HHHHHHHHHHHHHHHTT
T ss_pred ---CeeeecccccccCCHHHHHHHHHhhhhHHHHhc-------ccccccceEEEEeCCcccC-ccHHHHHHHHHHhcccc
Confidence 244333322 1233455677788877666653 3467899999999999982 22223333333333 36
Q ss_pred CccEEEEccccCChHHHHHHHhcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCc
Q 001047 304 EVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 383 (1174)
Q Consensus 304 ~~qiI~LSATl~n~~~~~~~l~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 383 (1174)
+.|+|+||||++.. +.. +.. ...|+...... ..
T Consensus 363 ~~~vl~~SAT~~~~------i~~-------~~~--~~~~i~~v~~~--------------~~------------------ 395 (673)
T 2wv9_A 363 EAAAIFMTATPPGT------SDP-------FPD--TNSPVHDVSSE--------------IP------------------ 395 (673)
T ss_dssp SCEEEEECSSCTTC------CCS-------SCC--CSSCEEEEECC--------------CC------------------
T ss_pred CCcEEEEcCCCChh------hhh-------hcc--cCCceEEEeee--------------cC------------------
Confidence 79999999999621 000 000 01111100000 00
Q ss_pred cCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhh
Q 001047 384 KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED 463 (1174)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~ 463 (1174)
.. .....+ ..+. ...+++||||++++.|+.++..|..
T Consensus 396 -~~--------------------------------------~~~~~l---~~l~-~~~~~~lVF~~s~~~~e~la~~L~~ 432 (673)
T 2wv9_A 396 -DR--------------------------------------AWSSGF---EWIT-DYAGKTVWFVASVKMSNEIAQCLQR 432 (673)
T ss_dssp -SS--------------------------------------CCSSCC---HHHH-SCCSCEEEECSSHHHHHHHHHHHHT
T ss_pred -HH--------------------------------------HHHHHH---HHHH-hCCCCEEEEECCHHHHHHHHHHHHh
Confidence 00 000000 1111 2457999999999999999999986
Q ss_pred cCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCC
Q 001047 464 CNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 543 (1174)
Q Consensus 464 ~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~ 543 (1174)
.++ .+..+|| .+|+.+++.|++|.++|||||+++++|||+|
T Consensus 433 ~g~----------------------------------~v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip- 473 (673)
T 2wv9_A 433 AGK----------------------------------RVIQLNR----KSYDTEYPKCKNGDWDFVITTDISEMGANFG- 473 (673)
T ss_dssp TTC----------------------------------CEEEECS----SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-
T ss_pred CCC----------------------------------eEEEeCh----HHHHHHHHHHHCCCceEEEECchhhcceeeC-
Confidence 554 6889999 4899999999999999999999999999999
Q ss_pred ceEEEeccc------------ccCCCCccccCHHHHHHhhcccCCC-CCCCccEEEEEeC
Q 001047 544 RTAVLSSLS------------KRTASGRIQLTSNELFQMAGRAGRR-GIDNRGHVVLVQT 590 (1174)
Q Consensus 544 v~vVI~~~~------------k~~~~~~~p~s~~~y~Qr~GRAGR~-G~d~~G~~ill~~ 590 (1174)
+++||+... ++.-.++.|.+..+|+||+|||||. | ..|.|+++..
T Consensus 474 v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g--~~G~ai~l~~ 531 (673)
T 2wv9_A 474 ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPS--QIGDEYHYGG 531 (673)
T ss_dssp CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSS--CCCEEEEECS
T ss_pred CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCC--CCCEEEEEEe
Confidence 999998532 1222267999999999999999998 5 6899998863
No 50
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.98 E-value=6.8e-32 Score=322.13 Aligned_cols=278 Identities=18% Similarity=0.180 Sum_probs=186.1
Q ss_pred HHHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCC--CCCCCCcE
Q 001047 170 AFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDS--AINREAQI 246 (1174)
Q Consensus 170 ~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~--~~~~~~~I 246 (1174)
.+++|++++++||||||||++|++|++..+. ++.+++|++||++|+.|+++.+.. ..++..++.. ...++.-+
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~----~~v~~~~~~~~~v~Tp~~l~ 79 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHG----LDVKFHTQAFSAHGSGREVI 79 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT----SCEEEESSCCCCCCCSSCCE
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhc----CCeEEecccceeccCCccce
Confidence 3567899999999999999999999988654 566999999999999999998874 3455544443 22233445
Q ss_pred EEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC-CCCccEEEEccccCCh-HHHHHHH
Q 001047 247 LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC-PKEVQIICLSATVANA-DELAGWI 324 (1174)
Q Consensus 247 lV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l-~~~~qiI~LSATl~n~-~~~~~~l 324 (1174)
-+++.+.+...+.. ...+.++++|||||||++ +..+...+..+...+ +.+.|+++||||++.. ..+.
T Consensus 80 ~~l~~~~l~~~~~~-------~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~--- 148 (440)
T 1yks_A 80 DAMCHATLTYRMLE-------PTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFP--- 148 (440)
T ss_dssp EEEEHHHHHHHHTS-------SSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSC---
T ss_pred eeecccchhHhhhC-------cccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhh---
Confidence 55666666555543 445789999999999998 334433333333222 4679999999999631 1000
Q ss_pred hcccCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCcc
Q 001047 325 GQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNI 404 (1174)
Q Consensus 325 ~~~~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1174)
. . +.|+...... .. ..
T Consensus 149 ----------~-~--~~~~~~~~~~--------------~~-------------------~~------------------ 164 (440)
T 1yks_A 149 ----------H-S--NGEIEDVQTD--------------IP-------------------SE------------------ 164 (440)
T ss_dssp ----------C-C--SSCEEEEECC--------------CC-------------------SS------------------
T ss_pred ----------h-c--CCCeeEeeec--------------cC-------------------hH------------------
Confidence 0 0 0111000000 00 00
Q ss_pred cccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHh
Q 001047 405 VTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRI 484 (1174)
Q Consensus 405 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~ 484 (1174)
...... ..+.. ..+++||||++++.|+.+++.|...++
T Consensus 165 --------------------~~~~~~---~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~------------------ 202 (440)
T 1yks_A 165 --------------------PWNTGH---DWILA-DKRPTAWFLPSIRAANVMAASLRKAGK------------------ 202 (440)
T ss_dssp --------------------CCSSSC---HHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTC------------------
T ss_pred --------------------HHHHHH---HHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcCC------------------
Confidence 000000 11111 246999999999999999999986554
Q ss_pred hCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEeccccc------CC--
Q 001047 485 LYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR------TA-- 556 (1174)
Q Consensus 485 ~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~------~~-- 556 (1174)
.+..+|| .+|+.+++.|++|.++|||||+++++|||+| +++||+++..+ ++
T Consensus 203 ----------------~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~ 261 (440)
T 1yks_A 203 ----------------SVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRK 261 (440)
T ss_dssp ----------------CEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTE
T ss_pred ----------------CEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccc
Confidence 6889999 5789999999999999999999999999999 99998743211 12
Q ss_pred ---CCccccCHHHHHHhhcccCCCCCCCccEEEEEeC
Q 001047 557 ---SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 590 (1174)
Q Consensus 557 ---~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~ 590 (1174)
.++.|.+..+|+||+|||||.|. ..|.|+++++
T Consensus 262 ~vi~~~~p~~~~~~~Qr~GR~GR~g~-~~g~~~~l~~ 297 (440)
T 1yks_A 262 VAIKGPLRISASSAAQRRGRIGRNPN-RDGDSYYYSE 297 (440)
T ss_dssp EEEEEEEECCHHHHHHHHTTSSCCTT-CCCEEEEECS
T ss_pred eeeccccccCHHHHHHhccccCCCCC-CCceEEEEec
Confidence 16789999999999999999731 6899999863
No 51
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.97 E-value=1.2e-30 Score=319.33 Aligned_cols=365 Identities=15% Similarity=0.120 Sum_probs=241.3
Q ss_pred HhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHh--CCC
Q 001047 152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETF--GDN 229 (1174)
Q Consensus 152 l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~--g~~ 229 (1174)
.+...++.|+++|..+++.+++|+ |+.++||+|||++|.+|++.....|..++|++||+.||.|.++.+..++ -++
T Consensus 104 ~~R~lG~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGL 181 (922)
T 1nkt_A 104 AWRVLDQRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGL 181 (922)
T ss_dssp HHHHHSCCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 334567799999999999999998 9999999999999999997666678899999999999999988887743 247
Q ss_pred eEEEEeCCCCCC-----CCCcEEEEcHHHH-HHHHhcccccccCCCCCCceeEEEEccccccc-cC--------------
Q 001047 230 NVGLLTGDSAIN-----REAQILIMTTEIL-RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS-DI-------------- 288 (1174)
Q Consensus 230 ~v~lltGd~~~~-----~~~~IlV~Tpe~L-~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~-d~-------------- 288 (1174)
+++++.|+.... ..++|+|+||+.| .++|......-.....++.+.++||||||.|+ |.
T Consensus 182 sv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~ 261 (922)
T 1nkt_A 182 QVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGA 261 (922)
T ss_dssp CEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCC
T ss_pred eEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcc
Confidence 899999986532 2589999999999 66665432111124557789999999999998 43
Q ss_pred -CcHHHHHHHHHHCC---------CCccEE-----------------EEccccCC-hHHHHHHHhc------c------c
Q 001047 289 -SRGTVWEEIIIYCP---------KEVQII-----------------CLSATVAN-ADELAGWIGQ------I------H 328 (1174)
Q Consensus 289 -~~g~~~e~ii~~l~---------~~~qiI-----------------~LSATl~n-~~~~~~~l~~------~------~ 328 (1174)
++...+..++..++ +..|++ ++|||.+. ...+...+.. . .
T Consensus 262 ~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~d 341 (922)
T 1nkt_A 262 SNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRD 341 (922)
T ss_dssp HHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECS
T ss_pred hhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeec
Confidence 35577888899997 678888 89999764 2232221111 0 0
Q ss_pred CceeeecC-CCCccc-------------------c----------E--Eeecccc---cccccccccccccchhhhhhhh
Q 001047 329 GKTELITS-SRRPVP-------------------L----------T--WYFSTKT---ALLPLLDEKGKHMNRKLSLNYL 373 (1174)
Q Consensus 329 ~~~~~i~~-~~rpvp-------------------l----------~--~~~~~~~---~~~~~~~~~~~~~~~~l~~~~l 373 (1174)
+.+.++.. ..|..+ + + .+|.... ++..............+.+..+
T Consensus 342 g~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv 421 (922)
T 1nkt_A 342 GEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVV 421 (922)
T ss_dssp SCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEE
T ss_pred CceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeE
Confidence 11111110 011100 0 0 0110000 1111111111001111101100
Q ss_pred hcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHH
Q 001047 374 QLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRG 453 (1174)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~ 453 (1174)
..+... +..+. . .... +... .......+...+.... ..+.|+||||.|+..
T Consensus 422 -----~IPtn~---p~~R~-----d--~~d~--------v~~t-----~~~K~~al~~~i~~~~-~~gqpvLVft~Sie~ 472 (922)
T 1nkt_A 422 -----SIPTNM---PMIRE-----D--QSDL--------IYKT-----EEAKYIAVVDDVAERY-AKGQPVLIGTTSVER 472 (922)
T ss_dssp -----ECCCSS---CCCCE-----E--CCCE--------EESC-----HHHHHHHHHHHHHHHH-HTTCCEEEEESCHHH
T ss_pred -----EeCCCC---Ccccc-----c--CCcE--------EEeC-----HHHHHHHHHHHHHHHH-hcCCcEEEEECCHHH
Confidence 000000 00000 0 0000 0000 0011222233333222 245699999999999
Q ss_pred HHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEech
Q 001047 454 CDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATE 533 (1174)
Q Consensus 454 ~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~ 533 (1174)
++.++..|...|+ .+.++||.+...++..+...|+.| .|+|||+
T Consensus 473 sE~Ls~~L~~~Gi----------------------------------~~~vLnak~~~rEa~iia~agr~G--~VtIATn 516 (922)
T 1nkt_A 473 SEYLSRQFTKRRI----------------------------------PHNVLNAKYHEQEATIIAVAGRRG--GVTVATN 516 (922)
T ss_dssp HHHHHHHHHHTTC----------------------------------CCEEECSSCHHHHHHHHHTTTSTT--CEEEEET
T ss_pred HHHHHHHHHHCCC----------------------------------CEEEecCChhHHHHHHHHhcCCCC--eEEEecc
Confidence 9999999998776 578899999888888888889888 6999999
Q ss_pred hhhhcCCcCCc----------------------------------------------------eEEEecccccCCCCccc
Q 001047 534 TLAAGINMPAR----------------------------------------------------TAVLSSLSKRTASGRIQ 561 (1174)
Q Consensus 534 tla~GIDiP~v----------------------------------------------------~vVI~~~~k~~~~~~~p 561 (1174)
+++||+||+.. .+||+ ++.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~--------te~p 588 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG--------TERH 588 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE--------CSCC
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe--------ccCC
Confidence 99999999975 59999 8999
Q ss_pred cCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 562 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 562 ~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
.|...|.||+||+||.| ..|.+++|.+..+
T Consensus 589 es~riy~qr~GRTGRqG--dpG~s~fflSleD 618 (922)
T 1nkt_A 589 ESRRIDNQLRGRSGRQG--DPGESRFYLSLGD 618 (922)
T ss_dssp SSHHHHHHHHHTSSGGG--CCEEEEEEEETTS
T ss_pred CCHHHHHHHhcccccCC--CCeeEEEEechhH
Confidence 99999999999999999 8999999988765
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.97 E-value=1.3e-30 Score=324.05 Aligned_cols=341 Identities=16% Similarity=0.176 Sum_probs=193.7
Q ss_pred CCCCCHHHHHHHHHHHc----C-CcEEEEccCCcchHHHHHHHHHHHHh---------cCCeEEEEcccHHHHHHHH-HH
Q 001047 157 DFRIDKFQRSSIEAFLR----G-SSVVVSAPTSSGKTLIAEAAAVATVA---------NQRRIFYTTPLKALSNQKF-RE 221 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~ll~----g-~~vlv~apTGsGKTlv~~~~il~~l~---------~g~rvlvl~PtraLa~Q~~-~~ 221 (1174)
.+.|+++|.+|++.++. + +++++++|||+|||++++.++...+. .++++||++||++|+.|++ +.
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 35799999999998875 4 67999999999999998777766655 3479999999999999999 66
Q ss_pred HHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC
Q 001047 222 FRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC 301 (1174)
Q Consensus 222 l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l 301 (1174)
|.. |+. .++.+.++ ....+.+|+|+||++|.+.+..... ........+++||+||||++.... ...|..++..+
T Consensus 256 ~~~-~~~-~~~~~~~~-~~~~~~~I~v~T~~~l~~~~~~~~~--~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~ 329 (590)
T 3h1t_A 256 FTP-FGD-ARHKIEGG-KVVKSREIYFAIYQSIASDERRPGL--YKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYF 329 (590)
T ss_dssp CTT-TCS-SEEECCC---CCSSCSEEEEEGGGC------CCG--GGGSCTTSCSEEEESCCC----------CHHHHHHS
T ss_pred HHh-cch-hhhhhhcc-CCCCCCcEEEEEhhhhccccccccc--cccCCCCccCEEEEECCccccccc-hHHHHHHHHhC
Confidence 665 554 35555543 3456789999999999876532110 022345678999999999987532 35677788887
Q ss_pred CCCccEEEEccccCCh--HHHHHHHhcccCceeeec-----CCCCccccEEeecccccccccccccccccchhhhhhhhh
Q 001047 302 PKEVQIICLSATVANA--DELAGWIGQIHGKTELIT-----SSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQ 374 (1174)
Q Consensus 302 ~~~~qiI~LSATl~n~--~~~~~~l~~~~~~~~~i~-----~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 374 (1174)
+ ..++|+||||+.+. ..+..+++.. ..... ......|......... .+..+....... +
T Consensus 330 ~-~~~~l~lTATP~~~~~~~~~~~f~~~---~~~~~~~~~i~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~----~- 395 (590)
T 3h1t_A 330 E-PAFQIGMTATPLREDNRDTYRYFGNP---IYTYSLRQGIDDGFLAPYRVHRVISE-----VDAAGWRPSKGD----V- 395 (590)
T ss_dssp T-TSEEEEEESSCSCTTTHHHHHHSCSC---SEEECHHHHHHHTSSCCEEEEEEEET-----TCC---------------
T ss_pred C-cceEEEeccccccccchhHHHHcCCc---eEecCHHHHhhCCccCCcEEEEeeee-----eecccccccccc----c-
Confidence 6 47899999998753 3445555321 11100 0000011111000000 000000000000 0
Q ss_pred cccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhh--hhhcCchhHHHHHHHHHh--CCCCCeEEEecC
Q 001047 375 LSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA--IRRSQVPQVIDTLWHLRS--RDMLPAIWFIFN 450 (1174)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~l~~l~~--~~~~~~IVF~~s 450 (1174)
..+ .... .........+.. ........+.+.+..+.. ...+++||||++
T Consensus 396 ------~~~-------------~~~~--------~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~ 448 (590)
T 3h1t_A 396 ------DRF-------------GREI--------PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVD 448 (590)
T ss_dssp ----------------------------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred ------ccc-------------cccc--------ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECC
Confidence 000 0000 000000000000 001111222233322221 345789999999
Q ss_pred HHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCce---
Q 001047 451 RRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVK--- 527 (1174)
Q Consensus 451 r~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ik--- 527 (1174)
+..|+.++..|...+. .+.......+..+||.++ ++|+.+++.|++|..+
T Consensus 449 ~~~a~~l~~~L~~~~~--------------------------~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ 501 (590)
T 3h1t_A 449 QEHADEMRRALNNLNS--------------------------DLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPV 501 (590)
T ss_dssp HHHHHHHHHHHHHHTH--------------------------HHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCC
T ss_pred HHHHHHHHHHHHHhhh--------------------------hhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCE
Confidence 9999999999975431 000001123677888875 4799999999998876
Q ss_pred EEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCC
Q 001047 528 VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 579 (1174)
Q Consensus 528 VLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~ 579 (1174)
|||||+++++|||+|++++||+ ++.+.|+..|+||+||+||.|.
T Consensus 502 ilvtt~~l~~GiDip~v~~Vi~--------~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 502 ILTTSQLLTTGVDAPTCKNVVL--------ARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp EEEESSTTTTTCCCTTEEEEEE--------ESCCCCHHHHHHHHTTSCCCBG
T ss_pred EEEECChhhcCccchheeEEEE--------EecCCChHHHHHHHhhhcccCc
Confidence 8999999999999999999999 8889999999999999999885
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.96 E-value=3.5e-28 Score=315.57 Aligned_cols=396 Identities=14% Similarity=0.103 Sum_probs=229.2
Q ss_pred CCCCCHHHHHHHHHHHcC--CcEEEEccCCcchHHHHHHHHHHHHhcCC--eEEEEcccHHHHHHHHHHHHHHhCCCeEE
Q 001047 157 DFRIDKFQRSSIEAFLRG--SSVVVSAPTSSGKTLIAEAAAVATVANQR--RIFYTTPLKALSNQKFREFRETFGDNNVG 232 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~ll~g--~~vlv~apTGsGKTlv~~~~il~~l~~g~--rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ 232 (1174)
.+.|+|+|.+++..++.. .++|++++||+|||++++.++...+..+. ++||++|+ +|+.||..++.+.|+ ..+.
T Consensus 151 ~~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~-l~v~ 228 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFN-LRFA 228 (968)
T ss_dssp SSCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSC-CCCE
T ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhC-CCEE
Confidence 368999999999988764 58999999999999999988888777665 99999999 999999999999886 5577
Q ss_pred EEeCCC---------CCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcH--HHHHHHHHHC
Q 001047 233 LLTGDS---------AINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRG--TVWEEIIIYC 301 (1174)
Q Consensus 233 lltGd~---------~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g--~~~e~ii~~l 301 (1174)
+++|+. ......+|+|+|++.+.+..... ......++++||+||||++...... ..+..+....
T Consensus 229 v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~-----~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 229 LFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRL-----EHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp ECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTT-----HHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred EEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHH-----HHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 776644 22246799999999886421110 0112347899999999999754321 2233333333
Q ss_pred CCCccEEEEccccCC--hHHHHHHHhcccCceee------------------ecCCCCcccc--------EEeecccccc
Q 001047 302 PKEVQIICLSATVAN--ADELAGWIGQIHGKTEL------------------ITSSRRPVPL--------TWYFSTKTAL 353 (1174)
Q Consensus 302 ~~~~qiI~LSATl~n--~~~~~~~l~~~~~~~~~------------------i~~~~rpvpl--------~~~~~~~~~~ 353 (1174)
....++++|||||.+ ..++..++......... +..-....++ ...+. ...+
T Consensus 304 ~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~-~~~~ 382 (968)
T 3dmq_A 304 EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIG-EQDI 382 (968)
T ss_dssp TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTC-TTCS
T ss_pred hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhc-chhh
Confidence 345679999999842 33333333221110000 0000000000 00000 0000
Q ss_pred cccccccc------cccchhhhhhhhhcccccCCCccC------CCccccccc----------------cccCCCCCccc
Q 001047 354 LPLLDEKG------KHMNRKLSLNYLQLSTSEVKPYKD------GGSRRRNSR----------------KHADMNSNNIV 405 (1174)
Q Consensus 354 ~~~~~~~~------~~~~~~l~~~~l~~~~~~~~~~~~------~~~~~~~~~----------------~~~~~~~~~~~ 405 (1174)
.+++.... ......+....+.........+.. ..+.+.... ..........
T Consensus 383 ~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~- 461 (968)
T 3dmq_A 383 EPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE- 461 (968)
T ss_dssp STTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG-
T ss_pred HHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH-
Confidence 00000000 000000000000000000000000 000000000 0000000000
Q ss_pred ccccccccchhhhhhh-----hhcCchhHHHHHHH-HHhCCCCCeEEEecCHHHHHHHHHHhhh-cCCCCHHhHHHHHHH
Q 001047 406 TSFGQHQLSKNSINAI-----RRSQVPQVIDTLWH-LRSRDMLPAIWFIFNRRGCDAAVQYLED-CNLLDECEMSEVELA 478 (1174)
Q Consensus 406 ~~~~~~~l~~~~~~~~-----~~~~~~~~~~~l~~-l~~~~~~~~IVF~~sr~~~~~la~~L~~-~~~~~~~e~~~i~~~ 478 (1174)
...............+ ...........+.. +......++||||+++..++.++..|.. .|+
T Consensus 462 ~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~------------ 529 (968)
T 3dmq_A 462 DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGI------------ 529 (968)
T ss_dssp GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCC------------
T ss_pred HHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCC------------
Confidence 0000000000000000 00011122333333 3345678999999999999999999873 354
Q ss_pred HHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCC--ceEEEechhhhhcCCcCCceEEEecccccCC
Q 001047 479 LKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGL--VKVVFATETLAAGINMPARTAVLSSLSKRTA 556 (1174)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~--ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~ 556 (1174)
.+..+||+|++.+|+.+++.|++|. ++|||||+++++|||+|++++||+
T Consensus 530 ----------------------~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~------- 580 (968)
T 3dmq_A 530 ----------------------RAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVM------- 580 (968)
T ss_dssp ----------------------CEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEEC-------
T ss_pred ----------------------cEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEE-------
Confidence 6899999999999999999999998 999999999999999999999999
Q ss_pred CCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhh
Q 001047 557 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 603 (1174)
Q Consensus 557 ~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~ 603 (1174)
++.|.++..|.||+||+||.|......++.+.....-.+.+.+.+.
T Consensus 581 -~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~ 626 (968)
T 3dmq_A 581 -FDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYH 626 (968)
T ss_dssp -SSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHH
T ss_pred -ecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHH
Confidence 8999999999999999999996555555555554432333455543
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.96 E-value=3.4e-27 Score=287.44 Aligned_cols=371 Identities=13% Similarity=0.029 Sum_probs=218.5
Q ss_pred CCCCCHHHHHHHHHH----HcCCcEEEEccCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHHhCCCe
Q 001047 157 DFRIDKFQRSSIEAF----LRGSSVVVSAPTSSGKTLIAEAAAVATVAN--QRRIFYTTPLKALSNQKFREFRETFGDNN 230 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~l----l~g~~vlv~apTGsGKTlv~~~~il~~l~~--g~rvlvl~PtraLa~Q~~~~l~~~~g~~~ 230 (1174)
...|+|+|.++++.+ ..++++|++++||+|||++++..+...... ..++||++| .+|+.||.+++.++++...
T Consensus 35 ~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~ 113 (500)
T 1z63_A 35 KANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLR 113 (500)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSC
T ss_pred hccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCce
Confidence 357999999999876 357899999999999999987766655443 368999999 5799999999999887788
Q ss_pred EEEEeCCCCCC--CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEE
Q 001047 231 VGLLTGDSAIN--REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQII 308 (1174)
Q Consensus 231 v~lltGd~~~~--~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI 308 (1174)
+.+++|+.... .+.+|+|+|++.+.+... .....+++||+||||++.+.. ......+..++ ..+.+
T Consensus 114 v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~---------l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~~~l 181 (500)
T 1z63_A 114 FAVFHEDRSKIKLEDYDIILTTYAVLLRDTR---------LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SKYRI 181 (500)
T ss_dssp EEECSSSTTSCCGGGSSEEEEEHHHHTTCHH---------HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EEEEE
T ss_pred EEEEecCchhccccCCcEEEeeHHHHhccch---------hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cCcEE
Confidence 88888876432 367899999999875432 112368999999999997543 23334455554 46789
Q ss_pred EEccccCC--hHHHHHHHhcccCce----eeecCCC-------------------CccccEEeecc---ccccccccccc
Q 001047 309 CLSATVAN--ADELAGWIGQIHGKT----ELITSSR-------------------RPVPLTWYFST---KTALLPLLDEK 360 (1174)
Q Consensus 309 ~LSATl~n--~~~~~~~l~~~~~~~----~~i~~~~-------------------rpvpl~~~~~~---~~~~~~~~~~~ 360 (1174)
+|||||.. ..++...+....... ..+...+ .|+-+...... ...+.+.....
T Consensus 182 ~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~ 261 (500)
T 1z63_A 182 ALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETN 261 (500)
T ss_dssp EECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEE
T ss_pred EEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEE
Confidence 99999842 455444333221100 0000000 00000000000 00000000000
Q ss_pred -ccccc---hhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhh-----hhhhhcCchhHHH
Q 001047 361 -GKHMN---RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSI-----NAIRRSQVPQVID 431 (1174)
Q Consensus 361 -~~~~~---~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~ 431 (1174)
...+. ..+........ ...+........... .................. ..........+.+
T Consensus 262 v~~~l~~~~~~~y~~~~~~~---~~~~~~~~~~~~~~~------~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~ 332 (500)
T 1z63_A 262 VYCNLTPEQAAMYKAEVENL---FNNIDSVTGIKRKGM------ILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTME 332 (500)
T ss_dssp EEECCCHHHHHHHHHHHHHH---TTTTTTCCTHHHHHH------HHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHHHHHH---HHHHHhhhcccchHH------HHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHH
Confidence 00000 00000000000 000000000000000 000000000000000000 0000001112233
Q ss_pred HHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhc-CCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCC
Q 001047 432 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC-NLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCL 510 (1174)
Q Consensus 432 ~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~-~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~ 510 (1174)
.+..+. ..+.++|||+.++..++.++..|... ++ .+..+||+++
T Consensus 333 ~l~~~~-~~~~k~lvF~~~~~~~~~l~~~l~~~~~~----------------------------------~~~~~~g~~~ 377 (500)
T 1z63_A 333 IIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKELNT----------------------------------EVPFLYGELS 377 (500)
T ss_dssp HHHHHH-TTTCCEEEECSCHHHHHHHHHHHHHHHTC----------------------------------CCCEEETTSC
T ss_pred HHHHHH-ccCCcEEEEEehHHHHHHHHHHHHHhhCC----------------------------------CeEEEECCCC
Confidence 333332 24579999999999999998888642 33 6888999999
Q ss_pred HHHHHHHHHHHhcC-Cce-EEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEE
Q 001047 511 PIWKSFIEELFQRG-LVK-VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 588 (1174)
Q Consensus 511 ~~~R~~v~~~F~~G-~ik-VLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill 588 (1174)
+.+|+.+++.|++| .++ +|+||+++++|+|+|++++||+ ++.|+++..|.|++||++|.|+.....++.+
T Consensus 378 ~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~--------~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~l 449 (500)
T 1z63_A 378 KKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH--------FDRWWNPAVEDQATDRVYRIGQTRNVIVHKL 449 (500)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE--------SSCCSCC---CHHHHTTTTTTTTSCEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEE--------eCCCCCcchHHHHHHHHHHcCCCCeeEEEEE
Confidence 99999999999998 565 7999999999999999999999 8999999999999999999998877777766
Q ss_pred eCCC
Q 001047 589 QTPY 592 (1174)
Q Consensus 589 ~~~~ 592 (1174)
....
T Consensus 450 v~~~ 453 (500)
T 1z63_A 450 ISVG 453 (500)
T ss_dssp EETT
T ss_pred EeCC
Confidence 6543
No 55
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.93 E-value=5.8e-26 Score=245.37 Aligned_cols=181 Identities=20% Similarity=0.301 Sum_probs=153.3
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh---cCCeEEEEcccHHH
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---NQRRIFYTTPLKAL 214 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~---~g~rvlvl~PtraL 214 (1174)
.|.++++.+...+.+.+.....|+++|.++++.+++|+++++++|||||||++|.+|++..+. .+.+++|++||++|
T Consensus 5 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L 84 (219)
T 1q0u_A 5 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTREL 84 (219)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHH
Confidence 466677777777888887778899999999999999999999999999999999999998875 35689999999999
Q ss_pred HHHHHHHHHHHhC------CCeEEEEeCCCC-------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcc
Q 001047 215 SNQKFREFRETFG------DNNVGLLTGDSA-------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDE 281 (1174)
Q Consensus 215 a~Q~~~~l~~~~g------~~~v~lltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDE 281 (1174)
++|+++++.+... ...++.+.|+.. ...+++|+|+||++|.+++.. ....+.++++||+||
T Consensus 85 ~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~------~~~~~~~~~~lViDE 158 (219)
T 1q0u_A 85 ATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE------QALDVHTAHILVVDE 158 (219)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT------TCCCGGGCCEEEECS
T ss_pred HHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc------CCCCcCcceEEEEcC
Confidence 9999999998764 356777887653 224689999999999998875 344578899999999
Q ss_pred ccccccCCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhc
Q 001047 282 VHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326 (1174)
Q Consensus 282 aH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~ 326 (1174)
||++.+.+++..+..++..++++.|+++||||+++ ++.+|+..
T Consensus 159 ah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~--~~~~~~~~ 201 (219)
T 1q0u_A 159 ADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPE--KLKPFLKK 201 (219)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCG--GGHHHHHH
T ss_pred chHHhhhChHHHHHHHHHhCCcccEEEEEecCCCH--HHHHHHHH
Confidence 99999989999999999999989999999999974 34444443
No 56
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.93 E-value=1.6e-25 Score=243.43 Aligned_cols=169 Identities=19% Similarity=0.199 Sum_probs=142.7
Q ss_pred ccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh---------cCCeEEEEcccH
Q 001047 142 FGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---------NQRRIFYTTPLK 212 (1174)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~---------~g~rvlvl~Ptr 212 (1174)
+++.+.....+.+.....|+++|.++++.+++|++++++||||||||++|++|++..+. .+.++||++||+
T Consensus 25 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~ 104 (228)
T 3iuy_A 25 FQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTR 104 (228)
T ss_dssp HTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSH
T ss_pred hccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCH
Confidence 45555566667776666899999999999999999999999999999999999988764 567899999999
Q ss_pred HHHHHHHHHHHHHh-CCCeEEEEeCCCCCC-------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc
Q 001047 213 ALSNQKFREFRETF-GDNNVGLLTGDSAIN-------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 213 aLa~Q~~~~l~~~~-g~~~v~lltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~ 284 (1174)
+|+.|+++++.+.. .+..+..+.|+.... .+++|+|+||++|.+++.. ....+.++++||+||||+
T Consensus 105 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~------~~~~~~~~~~lViDEah~ 178 (228)
T 3iuy_A 105 ELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN------NSVNLRSITYLVIDEADK 178 (228)
T ss_dssp HHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT------TCCCCTTCCEEEECCHHH
T ss_pred HHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc------CCcCcccceEEEEECHHH
Confidence 99999999999863 345677777776543 3579999999999998875 344578999999999999
Q ss_pred cccCCcHHHHHHHHHHCCCCccEEEEccccCC
Q 001047 285 LSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316 (1174)
Q Consensus 285 l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n 316 (1174)
+.+.+|+..+..++..++++.|+++||||+++
T Consensus 179 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 210 (228)
T 3iuy_A 179 MLDMEFEPQIRKILLDVRPDRQTVMTSATWPD 210 (228)
T ss_dssp HHHTTCHHHHHHHHHHSCSSCEEEEEESCCCH
T ss_pred HhccchHHHHHHHHHhCCcCCeEEEEEeeCCH
Confidence 99999999999999999999999999999974
No 57
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.93 E-value=4.6e-25 Score=283.77 Aligned_cols=354 Identities=14% Similarity=0.150 Sum_probs=212.5
Q ss_pred CCCCHHHHHHHHHHHc--------------CCcEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHHHH
Q 001047 158 FRIDKFQRSSIEAFLR--------------GSSVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPLKALSNQKFR 220 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~--------------g~~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~PtraLa~Q~~~ 220 (1174)
+.|+|+|..|++.++. +++++++++||||||+++ ++++..+.. ..++||++|+++|+.|+.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 4599999999999875 368999999999999998 555555542 3599999999999999999
Q ss_pred HHHHHhCCCeEEEEeCCCC-------C-CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHH
Q 001047 221 EFRETFGDNNVGLLTGDSA-------I-NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292 (1174)
Q Consensus 221 ~l~~~~g~~~v~lltGd~~-------~-~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~ 292 (1174)
+|....+.. +.|..+ . ..+.+|+|+|+++|..++..... ...+....+||+||||++. .+.
T Consensus 349 ~f~~f~~~~----v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~----~~~~~~~~lvIiDEAHrs~---~~~ 417 (1038)
T 2w00_A 349 EYQRFSPDS----VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESD----LPVYNQQVVFIFDECHRSQ---FGE 417 (1038)
T ss_dssp HHHTTSTTC----SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCC----CGGGGSCEEEEEESCCTTH---HHH
T ss_pred HHHHhcccc----cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccc----hhccccccEEEEEccchhc---chH
Confidence 998843321 112211 1 24689999999999987754210 1134578899999999975 455
Q ss_pred HHHHHHHHCCCCccEEEEccccCChH------HHHHHHhcccCceeeec-----CCCCccccEEeecccccccccccccc
Q 001047 293 VWEEIIIYCPKEVQIICLSATVANAD------ELAGWIGQIHGKTELIT-----SSRRPVPLTWYFSTKTALLPLLDEKG 361 (1174)
Q Consensus 293 ~~e~ii~~l~~~~qiI~LSATl~n~~------~~~~~l~~~~~~~~~i~-----~~~rpvpl~~~~~~~~~~~~~~~~~~ 361 (1174)
.+..+...+| +.++++|||||.... ....+++.. ++... .+.--+|+...+.... +.+....
T Consensus 418 ~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~---i~~Y~l~~AI~dg~l~p~~v~y~~v~---~~~~~~~ 490 (1038)
T 2w00_A 418 AQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRE---LHSYVITDAIRDEKVLKFKVDYNDVR---PQFKSLE 490 (1038)
T ss_dssp HHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSE---EEEECHHHHHHHTSSCCEEEEECCCC---GGGHHHH
T ss_pred HHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCe---eEeecHHHHHhCCCcCCeEEEEEecc---chhhhcc
Confidence 6777777776 589999999996432 334444321 11110 0011122221111000 0000000
Q ss_pred cccc-hhhhhhhhhcccccCCCccCCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHH-HHHHHHhC
Q 001047 362 KHMN-RKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVID-TLWHLRSR 439 (1174)
Q Consensus 362 ~~~~-~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~l~~l~~~ 439 (1174)
.... ... .-+ .. .. ...... ....+.. ++..+...
T Consensus 491 ~e~d~~~~--~~i------------------------~~--~~-------~l~~~~--------ri~~I~~~Il~~~~~~ 527 (1038)
T 2w00_A 491 TETDEKKL--SAA------------------------EN--QQ-------AFLHPM--------RIQEITQYILNNFRQK 527 (1038)
T ss_dssp TCCCHHHH--HHT------------------------CS--TT-------TTTCHH--------HHHHHHHHHHHHHHHH
T ss_pred ccccHHHH--HHH------------------------HH--HH-------HhcCHH--------HHHHHHHHHHHHHHHh
Confidence 0000 000 000 00 00 000000 0111122 22222211
Q ss_pred --------CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccce-eEecCC--
Q 001047 440 --------DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGV-AAHHAG-- 508 (1174)
Q Consensus 440 --------~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv-~~~Hsg-- 508 (1174)
.+.++||||.|+..|..++..|...+- ......++. -...+ .++|++
T Consensus 528 ~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~--------------~~~~~~~~~--------~~~k~avv~s~~~~ 585 (1038)
T 2w00_A 528 THRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQE--------------EAANKSATY--------KPLRIATIFSFAAN 585 (1038)
T ss_dssp TTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHH--------------HHTTTSSSC--------CCCCEEEECCCCC-
T ss_pred hhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhh--------------hhccccccc--------ccCcEEEEEeCCCc
Confidence 235799999999999999988864320 000000000 00012 222321
Q ss_pred --------C----------C-----------------------------HHHHHHHHHHHhcCCceEEEechhhhhcCCc
Q 001047 509 --------C----------L-----------------------------PIWKSFIEELFQRGLVKVVFATETLAAGINM 541 (1174)
Q Consensus 509 --------l----------~-----------------------------~~~R~~v~~~F~~G~ikVLVAT~tla~GIDi 541 (1174)
+ + +..|..+.+.|++|.++|||+|+++.+|+|+
T Consensus 586 ~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDi 665 (1038)
T 2w00_A 586 EEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDA 665 (1038)
T ss_dssp -----CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCC
T ss_pred cccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCc
Confidence 1 2 1258899999999999999999999999999
Q ss_pred CCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCC--CccEEEEEeCCCCCHHHHHHHhhC
Q 001047 542 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID--NRGHVVLVQTPYEGAEECCKLLFA 604 (1174)
Q Consensus 542 P~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d--~~G~~ill~~~~~~~~~~~~~~~~ 604 (1174)
|.+.+++ .+.|.+...|+|++||++|.+.+ ..|.+|.+.+...........+.+
T Consensus 666 P~l~tly---------lDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~~~~l~~Al~~y~~ 721 (1038)
T 2w00_A 666 PTLNTLF---------VDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLERSTIDAITLFGD 721 (1038)
T ss_dssp TTEEEEE---------EESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCCHHHHHHHHHHTSC
T ss_pred ccccEEE---------EccCCCccceeehhhccCcCCCCCCCcEEEEEccccHHHHHHHHHHHhC
Confidence 9996654 56789999999999999999853 458888777655444445554444
No 58
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.93 E-value=1.6e-25 Score=253.47 Aligned_cols=183 Identities=16% Similarity=0.130 Sum_probs=152.0
Q ss_pred HHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcC--CcEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEccc
Q 001047 137 NEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRG--SSVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPL 211 (1174)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g--~~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~Pt 211 (1174)
..|.++++.+.....+.......|+++|.++++.++.| ++++++||||||||++|++|++..+.. +.++||++||
T Consensus 92 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~Pt 171 (300)
T 3fmo_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 171 (300)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCc
Confidence 34566677777777788877778999999999999987 999999999999999999999988753 3479999999
Q ss_pred HHHHHHHHHHHHHHh---CCCeEEEEeCCCCCC----CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc
Q 001047 212 KALSNQKFREFRETF---GDNNVGLLTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 212 raLa~Q~~~~l~~~~---g~~~v~lltGd~~~~----~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~ 284 (1174)
++|+.|+++.+..+. +...++...|+.... ..++|+|+||++|.+++.+. ....+.++++|||||||+
T Consensus 172 reLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~-----~~~~l~~l~~lVlDEad~ 246 (300)
T 3fmo_B 172 YELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-----KFIDPKKIKVFVLDEADV 246 (300)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTT-----CCCCGGGCSEEEETTHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhc-----CCCChhhceEEEEeCHHH
Confidence 999999999998864 346788888776543 35789999999999998652 234578999999999999
Q ss_pred ccc-CCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHHHH
Q 001047 285 LSD-ISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWI 324 (1174)
Q Consensus 285 l~d-~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~~l 324 (1174)
|.+ .++...+..++..+++++|+++||||+++ ...++..+
T Consensus 247 l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~ 288 (300)
T 3fmo_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKV 288 (300)
T ss_dssp HHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred HhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHH
Confidence 997 68889999999999999999999999985 34444433
No 59
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=3.7e-25 Score=236.38 Aligned_cols=173 Identities=20% Similarity=0.192 Sum_probs=149.2
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHH
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPLKAL 214 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~PtraL 214 (1174)
.|.++++.+...+.+.+.....|+++|.++++.+++++++++++|||+|||++|++|++..+.. +.+++|++||++|
T Consensus 4 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 83 (206)
T 1vec_A 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTREL 83 (206)
T ss_dssp SGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHH
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHH
Confidence 3566677777777777766668999999999999999999999999999999999999987643 5589999999999
Q ss_pred HHHHHHHHHHHhC---CCeEEEEeCCCCC-------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc
Q 001047 215 SNQKFREFRETFG---DNNVGLLTGDSAI-------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 215 a~Q~~~~l~~~~g---~~~v~lltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~ 284 (1174)
++|+++.+.+.+. +..++.++|+... ..+++|+|+||++|.+++.. ....+.++++||+||||+
T Consensus 84 ~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~------~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 84 ALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK------GVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp HHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT------TCSCCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc------CCcCcccCCEEEEEChHH
Confidence 9999999988653 4678888887653 35789999999999998875 344578899999999999
Q ss_pred cccCCcHHHHHHHHHHCCCCccEEEEccccCC
Q 001047 285 LSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316 (1174)
Q Consensus 285 l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n 316 (1174)
+.+.+++..++.++..++++.|+++||||+++
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPL 189 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCH
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCH
Confidence 99989999999999999989999999999973
No 60
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.93 E-value=5.4e-24 Score=265.74 Aligned_cols=370 Identities=12% Similarity=0.063 Sum_probs=217.2
Q ss_pred CCCCHHHHHHHHHHH---------cCCcEEEEccCCcchHHHHHHHHHHHHhcC-------CeEEEEcccHHHHHHHHHH
Q 001047 158 FRIDKFQRSSIEAFL---------RGSSVVVSAPTSSGKTLIAEAAAVATVANQ-------RRIFYTTPLKALSNQKFRE 221 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll---------~g~~vlv~apTGsGKTlv~~~~il~~l~~g-------~rvlvl~PtraLa~Q~~~~ 221 (1174)
..|+|+|.+++..+. .+...|++.+||+|||++++..+...+..+ +++||++|+ +|+.||.++
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 379999999999874 346799999999999999988887766543 469999996 899999999
Q ss_pred HHHHhCC-CeEEEEeCCCCC---------------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccc
Q 001047 222 FRETFGD-NNVGLLTGDSAI---------------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285 (1174)
Q Consensus 222 l~~~~g~-~~v~lltGd~~~---------------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l 285 (1174)
+.++++. ..+..+.|+... ....+|+|+|++.+..... ......+++||+||||++
T Consensus 133 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--------~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 133 VGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--------VLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--------TTTTSCCCEEEETTGGGC
T ss_pred HHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--------HhhcCCccEEEEECceec
Confidence 9998764 444555544321 1247899999999986542 112347899999999999
Q ss_pred ccCCcHHHHHHHHHHCCCCccEEEEccccCC--hHHHHHHHhcccC----ce----------------------------
Q 001047 286 SDISRGTVWEEIIIYCPKEVQIICLSATVAN--ADELAGWIGQIHG----KT---------------------------- 331 (1174)
Q Consensus 286 ~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n--~~~~~~~l~~~~~----~~---------------------------- 331 (1174)
.... ......+..++ ..+.++|||||-. ..++-..+..... ..
T Consensus 205 kn~~--~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~ 281 (644)
T 1z3i_X 205 KNSD--NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGE 281 (644)
T ss_dssp CTTC--HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHH
T ss_pred CChh--hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHH
Confidence 7432 22233334443 4578999999842 2222111111000 00
Q ss_pred ------------eeecCC------CCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCcccc--
Q 001047 332 ------------ELITSS------RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR-- 391 (1174)
Q Consensus 332 ------------~~i~~~------~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~-- 391 (1174)
.++... .-|......+. -........+...++....... ....+.....
T Consensus 282 ~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~----------~~ls~~q~~lY~~~~~~~~~~~-~~~~g~~~~~~l 350 (644)
T 1z3i_X 282 QKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVC----------CNLTPLQKELYKLFLKQAKPVE-SLQTGKISVSSL 350 (644)
T ss_dssp HHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEE----------ECCCHHHHHHHHHHHHHHCGGG-SSCTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEE----------eCCCHHHHHHHHHHHHHHHHHH-HHhcCccchhHH
Confidence 000000 00000000000 0000000111111110000000 0000000000
Q ss_pred ----cccc------------ccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHH
Q 001047 392 ----NSRK------------HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCD 455 (1174)
Q Consensus 392 ----~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~ 455 (1174)
..++ .................................+..++..+......++|||+..+..++
T Consensus 351 ~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~ 430 (644)
T 1z3i_X 351 SSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLD 430 (644)
T ss_dssp HHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHH
Confidence 0000 000000000000000000000000000000111223333333345679999999999999
Q ss_pred HHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCc---eEEEec
Q 001047 456 AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLV---KVVFAT 532 (1174)
Q Consensus 456 ~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~i---kVLVAT 532 (1174)
.+...|...++ .+..+||++++.+|+.+++.|++|.. .+|++|
T Consensus 431 ~l~~~l~~~g~----------------------------------~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st 476 (644)
T 1z3i_X 431 LFEKLCRNRRY----------------------------------LYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 476 (644)
T ss_dssp HHHHHHHHHTC----------------------------------CEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG
T ss_pred HHHHHHHHCCC----------------------------------CEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEec
Confidence 99988876554 57889999999999999999999865 489999
Q ss_pred hhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 533 ETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 533 ~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
.++++|||++++++||+ ++.|+++..|.|++||++|.|+.....++.+.+..
T Consensus 477 ~a~g~Glnl~~a~~Vi~--------~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 477 KAGGCGLNLIGANRLVM--------FDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp GGSCTTCCCTTEEEEEE--------CSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred ccccCCcccccCCEEEE--------ECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999999999999 99999999999999999999988777777666543
No 61
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.93 E-value=2.1e-25 Score=244.94 Aligned_cols=178 Identities=22% Similarity=0.154 Sum_probs=148.1
Q ss_pred HHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh--------cCCeEEEEcc
Q 001047 139 VKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA--------NQRRIFYTTP 210 (1174)
Q Consensus 139 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~--------~g~rvlvl~P 210 (1174)
|.++++.......+.+.....|+++|.++++.+++|++++++||||||||++|++|++..+. .+.++||++|
T Consensus 31 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~P 110 (242)
T 3fe2_A 31 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAP 110 (242)
T ss_dssp TTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECS
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeC
Confidence 34445555555666665555799999999999999999999999999999999999998875 3668999999
Q ss_pred cHHHHHHHHHHHHHHhC--CCeEEEEeCCCCCC-------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcc
Q 001047 211 LKALSNQKFREFRETFG--DNNVGLLTGDSAIN-------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDE 281 (1174)
Q Consensus 211 traLa~Q~~~~l~~~~g--~~~v~lltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDE 281 (1174)
|++|+.|+++.+.+... +..++.++|+.... .+++|+|+||++|.+++.. ....+.++++||+||
T Consensus 111 t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~------~~~~~~~~~~lViDE 184 (242)
T 3fe2_A 111 TRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC------GKTNLRRTTYLVLDE 184 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH------TSCCCTTCCEEEETT
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc------CCCCcccccEEEEeC
Confidence 99999999999888532 35688888876533 3589999999999998875 344678999999999
Q ss_pred ccccccCCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHH
Q 001047 282 VHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAG 322 (1174)
Q Consensus 282 aH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~ 322 (1174)
||++.+++|+..+..++..++++.|+++||||+++ ...+..
T Consensus 185 ah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~ 226 (242)
T 3fe2_A 185 ADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAE 226 (242)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHH
T ss_pred HHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHH
Confidence 99999999999999999999999999999999975 234443
No 62
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.93 E-value=4.8e-25 Score=240.09 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=152.6
Q ss_pred HHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q 001047 137 NEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---NQRRIFYTTPLKA 213 (1174)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~---~g~rvlvl~Ptra 213 (1174)
..|.++++.+...+.+.......|+++|.++++.+++|+++++++|||+|||++|.+|++..+. .+.++||++||++
T Consensus 24 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~ 103 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTRE 103 (230)
T ss_dssp CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHH
Confidence 3466667777777777776555699999999999999999999999999999999999988764 3569999999999
Q ss_pred HHHHHHHHHHHHhC---CCeEEEEeCCCCCC------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc
Q 001047 214 LSNQKFREFRETFG---DNNVGLLTGDSAIN------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 214 La~Q~~~~l~~~~g---~~~v~lltGd~~~~------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~ 284 (1174)
|++|+++++.+... +..++.+.|+.... .+++|+|+||++|.+++.. ....+.++++||+||||+
T Consensus 104 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~------~~~~~~~~~~lViDEah~ 177 (230)
T 2oxc_A 104 IAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIEL------DYLNPGSIRLFILDEADK 177 (230)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHT------TSSCGGGCCEEEESSHHH
T ss_pred HHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhc------CCcccccCCEEEeCCchH
Confidence 99999999998643 46788899876532 4689999999999998865 344577899999999999
Q ss_pred cccCC-cHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhc
Q 001047 285 LSDIS-RGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326 (1174)
Q Consensus 285 l~d~~-~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~ 326 (1174)
+.+.+ ++..+..++..++...|+++||||++ ..+.+++..
T Consensus 178 ~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~--~~~~~~~~~ 218 (230)
T 2oxc_A 178 LLEEGSFQEQINWIYSSLPASKQMLAVSATYP--EFLANALTK 218 (230)
T ss_dssp HHSTTSSHHHHHHHHHHSCSSCEEEEEESCCC--HHHHHHHTT
T ss_pred hhcCcchHHHHHHHHHhCCCCCeEEEEEeccC--HHHHHHHHH
Confidence 99876 99999999999998999999999987 445566554
No 63
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.93 E-value=3.6e-25 Score=236.61 Aligned_cols=180 Identities=23% Similarity=0.216 Sum_probs=154.5
Q ss_pred HHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh------cCCeEEEEcccH
Q 001047 139 VKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA------NQRRIFYTTPLK 212 (1174)
Q Consensus 139 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~------~g~rvlvl~Ptr 212 (1174)
|.++++.+.....+.......|+++|.++++.+++|+++++++|||+|||++|.+|++..+. .+.+++|++|++
T Consensus 3 f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~ 82 (207)
T 2gxq_A 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTR 82 (207)
T ss_dssp GGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSH
T ss_pred hhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCH
Confidence 45566666667777776667899999999999999999999999999999999999998864 467899999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCCCC-------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccc
Q 001047 213 ALSNQKFREFRETFGDNNVGLLTGDSAIN-------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285 (1174)
Q Consensus 213 aLa~Q~~~~l~~~~g~~~v~lltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l 285 (1174)
+|+.|+++++.+.++...++.+.|+.... .+++|+|+||+++.+++.. ....+.++++||+||||++
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~------~~~~~~~~~~iViDEah~~ 156 (207)
T 2gxq_A 83 ELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ------GVLDLSRVEVAVLDEADEM 156 (207)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH------TSSCCTTCSEEEEESHHHH
T ss_pred HHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc------CCcchhhceEEEEEChhHh
Confidence 99999999999988777888888876532 3689999999999998875 3445788999999999999
Q ss_pred ccCCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHHHH
Q 001047 286 SDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWI 324 (1174)
Q Consensus 286 ~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~~l 324 (1174)
.+.+++..+..++..++++.|+++||||+++ .+++..++
T Consensus 157 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 196 (207)
T 2gxq_A 157 LSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERY 196 (207)
T ss_dssp HHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHH
T ss_pred hccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHH
Confidence 9889999999999999999999999999985 34555544
No 64
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.93 E-value=6.7e-25 Score=239.83 Aligned_cols=180 Identities=23% Similarity=0.306 Sum_probs=150.8
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh-------cCCeEEEEcc
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-------NQRRIFYTTP 210 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-------~g~rvlvl~P 210 (1174)
.|.++++.+...+.+.......|+++|.++++.+++|+++++++|||+|||++|++|++..+. .+.++||++|
T Consensus 26 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~P 105 (236)
T 2pl3_A 26 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISP 105 (236)
T ss_dssp BGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECS
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeC
Confidence 456667777777777777777899999999999999999999999999999999999998763 4679999999
Q ss_pred cHHHHHHHHHHHHHHhCC--CeEEEEeCCCCCC------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccc
Q 001047 211 LKALSNQKFREFRETFGD--NNVGLLTGDSAIN------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEV 282 (1174)
Q Consensus 211 traLa~Q~~~~l~~~~g~--~~v~lltGd~~~~------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEa 282 (1174)
|++|++|+++++.+.... ..++.++|+.... .+++|+|+||++|.+++... ....+.++++||+|||
T Consensus 106 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~-----~~~~~~~~~~lViDEa 180 (236)
T 2pl3_A 106 TRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDET-----VSFHATDLQMLVLDEA 180 (236)
T ss_dssp SHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHC-----SSCCCTTCCEEEETTH
T ss_pred CHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhc-----CCcccccccEEEEeCh
Confidence 999999999999986543 5788888876533 36899999999999887652 1245678999999999
Q ss_pred cccccCCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHH
Q 001047 283 HYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAG 322 (1174)
Q Consensus 283 H~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~ 322 (1174)
|++.+++++..+..++..++++.|+++||||+++ ..+++.
T Consensus 181 h~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 221 (236)
T 2pl3_A 181 DRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLAR 221 (236)
T ss_dssp HHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHH
Confidence 9999999999999999999999999999999974 344443
No 65
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.3e-24 Score=275.81 Aligned_cols=378 Identities=16% Similarity=0.137 Sum_probs=227.2
Q ss_pred CCCCCHHHHHHHHHHH----cCCcEEEEccCCcchHHHHHHHHHHHH---hcCCeEEEEcccHHHHHHHHHHHHHHhCCC
Q 001047 157 DFRIDKFQRSSIEAFL----RGSSVVVSAPTSSGKTLIAEAAAVATV---ANQRRIFYTTPLKALSNQKFREFRETFGDN 229 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~ll----~g~~vlv~apTGsGKTlv~~~~il~~l---~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~ 229 (1174)
...++|||.+++..+. .++++|++.+||+|||++++..+...+ ...+.+|||+| .+|+.||.++|.+.++..
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~ 312 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDL 312 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTC
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCc
Confidence 3479999999998776 778999999999999999877765443 24568999999 789999999999998888
Q ss_pred eEEEEeCCCC-------------------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCc
Q 001047 230 NVGLLTGDSA-------------------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISR 290 (1174)
Q Consensus 230 ~v~lltGd~~-------------------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~ 290 (1174)
.+.+++|+.. .....+|+|+|++.+......- ...++++|||||||++...
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l--------~~~~w~~vIvDEaH~lkn~-- 382 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL--------GSIKWQFMAVDEAHRLKNA-- 382 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHH--------HTSEEEEEEETTGGGGCCS--
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHH--------hcCCcceeehhhhhhhcCc--
Confidence 8988888653 1235789999999987643221 1236899999999999642
Q ss_pred HHHHHHHHHHCCCCccEEEEccccC--ChHHHHHHHhcccCceeeecCCC--------------------CccccEEeec
Q 001047 291 GTVWEEIIIYCPKEVQIICLSATVA--NADELAGWIGQIHGKTELITSSR--------------------RPVPLTWYFS 348 (1174)
Q Consensus 291 g~~~e~ii~~l~~~~qiI~LSATl~--n~~~~~~~l~~~~~~~~~i~~~~--------------------rpvpl~~~~~ 348 (1174)
.......+..++ ....++|||||- +..++...+.............+ +|+-+.....
T Consensus 383 ~s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~ 461 (800)
T 3mwy_W 383 ESSLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKK 461 (800)
T ss_dssp SSHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGG
T ss_pred hhHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHH
Confidence 233344444453 456799999984 35666655554332111000000 0000000000
Q ss_pred cccccccccccc-----ccccchhhhhhhhhcccccCCCccCCCccccc--------ccccc-CCCCCc-----cccccc
Q 001047 349 TKTALLPLLDEK-----GKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRN--------SRKHA-DMNSNN-----IVTSFG 409 (1174)
Q Consensus 349 ~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~-----~~~~~~ 409 (1174)
......|-.... .......+....+.... ............ .++.. ...... ....+.
T Consensus 462 dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~---~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 538 (800)
T 3mwy_W 462 DVEKSLPSKTERILRVELSDVQTEYYKNILTKNY---SALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFG 538 (800)
T ss_dssp GGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCC---C----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC-
T ss_pred hhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHH---HHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcc
Confidence 000000000000 00000000000000000 000000000000 00000 000000 000000
Q ss_pred ccccchhh-hhhh--hhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhC
Q 001047 410 QHQLSKNS-INAI--RRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILY 486 (1174)
Q Consensus 410 ~~~l~~~~-~~~~--~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~ 486 (1174)
........ ...+ .......+..++..+. ..+.++|||+.....++.+...|...|+
T Consensus 539 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~-~~g~kvLIFsq~~~~ld~L~~~L~~~g~-------------------- 597 (800)
T 3mwy_W 539 DGKMTRENVLRGLIMSSGKMVLLDQLLTRLK-KDGHRVLIFSQMVRMLDILGDYLSIKGI-------------------- 597 (800)
T ss_dssp ---CCSHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCCEEEEESCHHHHHHHHHHHHHHTC--------------------
T ss_pred cccccHHHHHHHhhhcChHHHHHHHHHHHHh-hCCCeEEEEechHHHHHHHHHHHHhCCC--------------------
Confidence 00000000 0000 0011122233333332 3457999999999999999999876554
Q ss_pred CccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCc---eEEEechhhhhcCCcCCceEEEecccccCCCCccccC
Q 001047 487 PDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLV---KVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 563 (1174)
Q Consensus 487 ~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~i---kVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s 563 (1174)
.+..+||+++..+|+.+++.|++|.. .+|++|.+++.|||+|++++||+ ++.+++
T Consensus 598 --------------~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~--------~D~~wn 655 (800)
T 3mwy_W 598 --------------NFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVI--------FDSDWN 655 (800)
T ss_dssp --------------CCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEE--------SSCCSC
T ss_pred --------------CEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEE--------ecCCCC
Confidence 67889999999999999999998654 49999999999999999999999 899999
Q ss_pred HHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 564 SNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 564 ~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
+..+.|++||++|.|+.....++.+.+..
T Consensus 656 p~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 656 PQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp SHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred hhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 99999999999999998888888666654
No 66
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.92 E-value=1e-24 Score=236.25 Aligned_cols=173 Identities=18% Similarity=0.176 Sum_probs=144.3
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh---cCCeEEEEcccHHH
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---NQRRIFYTTPLKAL 214 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~---~g~rvlvl~PtraL 214 (1174)
.|.++++.+.....+.......|+++|.++++.+++|+++++++|||+|||++|.+|++..+. .+.++||++|+++|
T Consensus 15 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L 94 (224)
T 1qde_A 15 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTREL 94 (224)
T ss_dssp CGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHH
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHH
Confidence 355556666666666666556899999999999999999999999999999999999998774 35699999999999
Q ss_pred HHHHHHHHHHHhC--CCeEEEEeCCCCCC------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 215 SNQKFREFRETFG--DNNVGLLTGDSAIN------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 215 a~Q~~~~l~~~~g--~~~v~lltGd~~~~------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
+.|+++++.+.+. +..++.++|+.... .+++|+|+||++|.+++.. ....+.++++||+||||++.
T Consensus 95 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~------~~~~~~~~~~iViDEah~~~ 168 (224)
T 1qde_A 95 ALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR------RRFRTDKIKMFILDEADEML 168 (224)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHT------TSSCCTTCCEEEEETHHHHH
T ss_pred HHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHh------CCcchhhCcEEEEcChhHHh
Confidence 9999999998654 35678888876533 2489999999999998876 34457889999999999999
Q ss_pred cCCcHHHHHHHHHHCCCCccEEEEccccCC
Q 001047 287 DISRGTVWEEIIIYCPKEVQIICLSATVAN 316 (1174)
Q Consensus 287 d~~~g~~~e~ii~~l~~~~qiI~LSATl~n 316 (1174)
+.+++..+..++..++++.|+++||||+++
T Consensus 169 ~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 169 SSGFKEQIYQIFTLLPPTTQVVLLSATMPN 198 (224)
T ss_dssp HTTCHHHHHHHHHHSCTTCEEEEEESSCCH
T ss_pred hhhhHHHHHHHHHhCCccCeEEEEEeecCH
Confidence 989999999999999999999999999985
No 67
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.92 E-value=7.1e-25 Score=239.85 Aligned_cols=173 Identities=16% Similarity=0.154 Sum_probs=143.2
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh---cCCeEEEEcccHHH
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---NQRRIFYTTPLKAL 214 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~---~g~rvlvl~PtraL 214 (1174)
.|.++++.+...+.+.......|+++|.++++.+++|+++++++|||||||++|.+|++..+. .+.++||++||++|
T Consensus 31 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L 110 (237)
T 3bor_A 31 NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTREL 110 (237)
T ss_dssp SGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHH
Confidence 455566666666666665555699999999999999999999999999999999999998875 45699999999999
Q ss_pred HHHHHHHHHHHhC--CCeEEEEeCCCCCC--------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc
Q 001047 215 SNQKFREFRETFG--DNNVGLLTGDSAIN--------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 215 a~Q~~~~l~~~~g--~~~v~lltGd~~~~--------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~ 284 (1174)
+.|+++.+.+... ...+..+.|+.... ..++|+|+||++|.+++.. ....+.++++||+||||+
T Consensus 111 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~------~~~~~~~~~~lViDEah~ 184 (237)
T 3bor_A 111 AQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR------RYLSPKWIKMFVLDEADE 184 (237)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHT------TSSCSTTCCEEEEESHHH
T ss_pred HHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh------CCcCcccCcEEEECCchH
Confidence 9999999998654 34577777765432 2389999999999998875 334577899999999999
Q ss_pred cccCCcHHHHHHHHHHCCCCccEEEEccccCC
Q 001047 285 LSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316 (1174)
Q Consensus 285 l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n 316 (1174)
+.+.+++..+..++..++...|+++||||+++
T Consensus 185 ~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~ 216 (237)
T 3bor_A 185 MLSRGFKDQIYEIFQKLNTSIQVVLLSATMPT 216 (237)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEECSSCCH
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEEecCH
Confidence 99889999999999999999999999999974
No 68
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.92 E-value=2.9e-25 Score=246.59 Aligned_cols=174 Identities=23% Similarity=0.313 Sum_probs=145.6
Q ss_pred CCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh-------cCCeEEEEcccHHHHH
Q 001047 144 NEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-------NQRRIFYTTPLKALSN 216 (1174)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-------~g~rvlvl~PtraLa~ 216 (1174)
+.+.....+.......|+++|.++++.++.|++++++||||||||++|++|++..+. .+.++||++||++|+.
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~ 140 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAM 140 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHH
Confidence 344445556665555699999999999999999999999999999999999998775 4778999999999999
Q ss_pred HHHHHHHHHhCC--CeEEEEeCCCCCC-------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccccc
Q 001047 217 QKFREFRETFGD--NNVGLLTGDSAIN-------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287 (1174)
Q Consensus 217 Q~~~~l~~~~g~--~~v~lltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d 287 (1174)
|+++.+++.+.. ..++.++|+.... .+++|+|+||++|.+++.... ...+.++++|||||||++.+
T Consensus 141 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~-----~~~~~~l~~lViDEah~l~~ 215 (262)
T 3ly5_A 141 QTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTP-----GFMYKNLQCLVIDEADRILD 215 (262)
T ss_dssp HHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCT-----TCCCTTCCEEEECSHHHHHH
T ss_pred HHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccC-----CcccccCCEEEEcChHHHhh
Confidence 999999997653 4678888876533 358999999999998887532 23577899999999999999
Q ss_pred CCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHH
Q 001047 288 ISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAG 322 (1174)
Q Consensus 288 ~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~ 322 (1174)
.+|+..++.++..++..+|+++||||+++ .+.++.
T Consensus 216 ~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 216 VGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLAR 251 (262)
T ss_dssp TTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHH
Confidence 99999999999999999999999999985 344443
No 69
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.92 E-value=1.5e-24 Score=239.01 Aligned_cols=183 Identities=19% Similarity=0.209 Sum_probs=153.9
Q ss_pred HHHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEcccH
Q 001047 136 CNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPLK 212 (1174)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~Ptr 212 (1174)
...|.++++.+...+.+.......|+++|.++++.+++|++++++||||||||++|.+|++..+.. +.++||++||+
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr 121 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTR 121 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSH
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCH
Confidence 355777787777778888777778999999999999999999999999999999999999987753 45799999999
Q ss_pred HHHHHHHHHHHHHhC--CCeEEEEeCCCCC-------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccc
Q 001047 213 ALSNQKFREFRETFG--DNNVGLLTGDSAI-------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283 (1174)
Q Consensus 213 aLa~Q~~~~l~~~~g--~~~v~lltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH 283 (1174)
+|+.|+++++.+... +..++.+.|+... ..+++|+|+||++|.+++.... ...+.++++||+||||
T Consensus 122 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~-----~~~l~~~~~lViDEah 196 (249)
T 3ber_A 122 ELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK-----GFNLRALKYLVMDEAD 196 (249)
T ss_dssp HHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST-----TCCCTTCCEEEECSHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC-----CcCccccCEEEEcChh
Confidence 999999999988643 3568888887653 2578999999999999887521 2347789999999999
Q ss_pred ccccCCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHHH
Q 001047 284 YLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGW 323 (1174)
Q Consensus 284 ~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~~ 323 (1174)
++.+.+++..+..++..++++.|+++||||+++ ..++..+
T Consensus 197 ~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~ 237 (249)
T 3ber_A 197 RILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRA 237 (249)
T ss_dssp HHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHH
Confidence 999999999999999999989999999999974 2444443
No 70
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.92 E-value=3.4e-24 Score=236.88 Aligned_cols=179 Identities=20% Similarity=0.202 Sum_probs=149.5
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc------------CCeE
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN------------QRRI 205 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~------------g~rv 205 (1174)
.|.++++.+...+.+.......|+++|.++++.+++|++++++||||||||++|++|++..+.. +.++
T Consensus 24 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 103 (253)
T 1wrb_A 24 NFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKC 103 (253)
T ss_dssp SSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSE
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceE
Confidence 4666777777788888777778999999999999999999999999999999999999988753 3589
Q ss_pred EEEcccHHHHHHHHHHHHHHhCC--CeEEEEeCCCCCC-------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeE
Q 001047 206 FYTTPLKALSNQKFREFRETFGD--NNVGLLTGDSAIN-------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDV 276 (1174)
Q Consensus 206 lvl~PtraLa~Q~~~~l~~~~g~--~~v~lltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~l 276 (1174)
||++||++|+.|+++++.+.... ..++.+.|+.... .+++|+|+||++|.+++.. ....+.++++
T Consensus 104 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~------~~~~~~~~~~ 177 (253)
T 1wrb_A 104 LILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK------NKISLEFCKY 177 (253)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT------TSBCCTTCCE
T ss_pred EEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc------CCCChhhCCE
Confidence 99999999999999999986543 4677788876532 4689999999999998876 3345788999
Q ss_pred EEEccccccccCCcHHHHHHHHHH--CCC--CccEEEEccccCCh-HHHHH
Q 001047 277 IVLDEVHYLSDISRGTVWEEIIIY--CPK--EVQIICLSATVANA-DELAG 322 (1174)
Q Consensus 277 VIiDEaH~l~d~~~g~~~e~ii~~--l~~--~~qiI~LSATl~n~-~~~~~ 322 (1174)
||+||||++.+.+|+..+..++.. ++. +.|+++||||+++. ..++.
T Consensus 178 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~ 228 (253)
T 1wrb_A 178 IVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAA 228 (253)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHH
T ss_pred EEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHH
Confidence 999999999999999999999885 344 68999999999742 34443
No 71
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.92 E-value=6.1e-23 Score=246.04 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=96.2
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
.+.|+||||.|+..|+.++..|...|+ ...++||+....++..+..
T Consensus 473 ~gqpVLVFt~S~e~sE~Ls~~L~~~Gi----------------------------------~~~vLhgkq~~rE~~ii~~ 518 (822)
T 3jux_A 473 KGQPVLVGTTSIEKSELLSSMLKKKGI----------------------------------PHQVLNAKYHEKEAEIVAK 518 (822)
T ss_dssp HTCCEEEEESSHHHHHHHHHHHHTTTC----------------------------------CCEEECSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCC----------------------------------CEEEeeCCchHHHHHHHHh
Confidence 356999999999999999999987776 5788999977777777777
Q ss_pred HHhcCCceEEEechhhhhcCCcC--------CceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 520 LFQRGLVKVVFATETLAAGINMP--------ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~tla~GIDiP--------~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
.|+.| .|+|||++++||+||+ +..+||+ ++.|.|...|.||+|||||.| ..|.+++|.+.
T Consensus 519 ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn--------te~Pes~r~y~qriGRTGRqG--~~G~a~~fvsl 586 (822)
T 3jux_A 519 AGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG--------TERHESRRIDNQLRGRAGRQG--DPGESIFFLSL 586 (822)
T ss_dssp HHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE--------SSCCSSHHHHHHHHTTSSCSS--CCCEEEEEEET
T ss_pred CCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe--------cCCCCCHHHHHHhhCccccCC--CCeeEEEEech
Confidence 77777 6999999999999998 6679999 899999999999999999999 89999999887
Q ss_pred CC
Q 001047 592 YE 593 (1174)
Q Consensus 592 ~~ 593 (1174)
.+
T Consensus 587 eD 588 (822)
T 3jux_A 587 ED 588 (822)
T ss_dssp TS
T ss_pred hH
Confidence 66
No 72
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.91 E-value=3.6e-24 Score=235.38 Aligned_cols=181 Identities=22% Similarity=0.265 Sum_probs=144.1
Q ss_pred hccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh----cCCeEEEEcccHHHHH
Q 001047 141 EFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA----NQRRIFYTTPLKALSN 216 (1174)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~----~g~rvlvl~PtraLa~ 216 (1174)
.+++.+...+.+.......|+++|.++++.+++|++++++||||||||++|++|++..+. .+.++||++||++|+.
T Consensus 33 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~ 112 (245)
T 3dkp_A 33 EYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELAS 112 (245)
T ss_dssp HHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHH
T ss_pred ccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHH
Confidence 346666666777776666799999999999999999999999999999999999998886 3568999999999999
Q ss_pred HHHHHHHHHhCC--CeEEEEeCCC--------CCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 217 QKFREFRETFGD--NNVGLLTGDS--------AINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 217 Q~~~~l~~~~g~--~~v~lltGd~--------~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
|+++++.+.+.. ..+..++|+. ....+++|+|+||++|.+++.... ....+.++++||+||||++.
T Consensus 113 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~----~~~~~~~~~~lViDEah~~~ 188 (245)
T 3dkp_A 113 QIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDP----PGIDLASVEWLVVDESDKLF 188 (245)
T ss_dssp HHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSS----CSCCCTTCCEEEESSHHHHH
T ss_pred HHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCC----CCcccccCcEEEEeChHHhc
Confidence 999999997653 3566565542 123578999999999999887632 12457889999999999998
Q ss_pred c---CCcHHHHHHHHHHC-CCCccEEEEccccCChHHHHHHHhcc
Q 001047 287 D---ISRGTVWEEIIIYC-PKEVQIICLSATVANADELAGWIGQI 327 (1174)
Q Consensus 287 d---~~~g~~~e~ii~~l-~~~~qiI~LSATl~n~~~~~~~l~~~ 327 (1174)
+ .++...+..++..+ +.+.|+++||||++ .++..|+...
T Consensus 189 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~--~~v~~~~~~~ 231 (245)
T 3dkp_A 189 EDGKTGFRDQLASIFLACTSHKVRRAMFSATFA--YDVEQWCKLN 231 (245)
T ss_dssp HHC--CHHHHHHHHHHHCCCTTCEEEEEESSCC--HHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCCCCcEEEEEeccCC--HHHHHHHHHh
Confidence 7 45667777777665 45789999999997 4555565543
No 73
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=2.8e-24 Score=232.16 Aligned_cols=179 Identities=17% Similarity=0.193 Sum_probs=148.4
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHH
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPLKAL 214 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~PtraL 214 (1174)
.|.++++.+...+.+.......|+++|.++++.+++++++++++|||+|||++|++|++..+.. +.+++|++||++|
T Consensus 15 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 94 (220)
T 1t6n_A 15 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTREL 94 (220)
T ss_dssp CSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHH
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHH
Confidence 3666677766777777755556999999999999999999999999999999999999988654 3489999999999
Q ss_pred HHHHHHHHHHHhC---CCeEEEEeCCCCCC--------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccc
Q 001047 215 SNQKFREFRETFG---DNNVGLLTGDSAIN--------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283 (1174)
Q Consensus 215 a~Q~~~~l~~~~g---~~~v~lltGd~~~~--------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH 283 (1174)
+.|+++++.+... +..++.++|+.... ..++|+|+||++|.+++.. ....+.++++||+||||
T Consensus 95 ~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~------~~~~~~~~~~lViDEah 168 (220)
T 1t6n_A 95 AFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN------KSLNLKHIKHFILDECD 168 (220)
T ss_dssp HHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT------TSSCCTTCCEEEEESHH
T ss_pred HHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh------CCCCcccCCEEEEcCHH
Confidence 9999999988643 56788898876532 3569999999999998875 34457899999999999
Q ss_pred cccc-CCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHH
Q 001047 284 YLSD-ISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAG 322 (1174)
Q Consensus 284 ~l~d-~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~ 322 (1174)
++.+ .++...+..++..++++.|+++||||+++ .+++..
T Consensus 169 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 209 (220)
T 1t6n_A 169 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR 209 (220)
T ss_dssp HHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHH
T ss_pred HHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHH
Confidence 9986 46777888888888889999999999986 345444
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.90 E-value=2.2e-22 Score=251.00 Aligned_cols=114 Identities=16% Similarity=0.189 Sum_probs=100.1
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
.+.++||||+|++.|+.++..|...++ .+.++||+|++.+|..+++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi----------------------------------~~~~lh~~~~~~~R~~~~~ 483 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGI----------------------------------RARYLHHELDAFKRQALIR 483 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEEECTTCCHHHHHHHHH
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCC----------------------------------CceeecCCCCHHHHHHHHH
Confidence 346899999999999999999987665 6888999999999999999
Q ss_pred HHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
.|+.|.++|||||+++++|+|+|++++||+..... +..|.|..+|+||+|||||.| .|.|++++++.+
T Consensus 484 ~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~---~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 551 (664)
T 1c4o_A 484 DLRLGHYDCLVGINLLREGLDIPEVSLVAILDADK---EGFLRSERSLIQTIGRAARNA---RGEVWLYADRVS 551 (664)
T ss_dssp HHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTS---CSGGGSHHHHHHHHGGGTTST---TCEEEEECSSCC
T ss_pred HhhcCCceEEEccChhhcCccCCCCCEEEEeCCcc---cCCCCCHHHHHHHHCccCcCC---CCEEEEEEcCCC
Confidence 99999999999999999999999999999932211 224889999999999999985 799999987754
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.87 E-value=8.5e-21 Score=236.55 Aligned_cols=114 Identities=17% Similarity=0.233 Sum_probs=100.1
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
.+.++||||+|++.|+.++..|...|+ .+.++||++++.+|..+++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi----------------------------------~~~~lh~~~~~~~R~~~l~ 489 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGI----------------------------------KVNYLHSEIKTLERIEIIR 489 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEEECTTCCHHHHHHHHH
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCC----------------------------------CeEEEeCCCCHHHHHHHHH
Confidence 346899999999999999999987665 6788999999999999999
Q ss_pred HHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
.|++|.++|||||+++++|+|+|++++||+..... +..|.+..+|+||+|||||. ..|.|++++++.+
T Consensus 490 ~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~---~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 490 DLRLGKYDVLVGINLLREGLDIPEVSLVAILDADK---EGFLRSERSLIQTIGRAARN---AEGRVIMYADKIT 557 (661)
T ss_dssp HHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTC---CTTTTSHHHHHHHHHTTTTS---TTCEEEEECSSCC
T ss_pred HHhcCCeEEEEecchhhCCcccCCCCEEEEeCccc---ccCCCCHHHHHHHhCcccCC---CCCEEEEEEeCCC
Confidence 99999999999999999999999999999932211 12388999999999999997 4899999988754
No 76
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=202.09 Aligned_cols=158 Identities=23% Similarity=0.285 Sum_probs=113.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc------CCeEEEEcccHHHHHH-HHHHHHHHhC-
Q 001047 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN------QRRIFYTTPLKALSNQ-KFREFRETFG- 227 (1174)
Q Consensus 156 ~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~------g~rvlvl~PtraLa~Q-~~~~l~~~~g- 227 (1174)
..+.|+++|.++++.+++++++++.+|||+|||+++.+++...+.. +.++||++|+++|+.| +.+.+....+
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 109 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 109 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 4568999999999999999999999999999999999999877643 6799999999999999 6677777554
Q ss_pred CCeEEEEeCCCCCCC-------CCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCC-cHHHHHHHHH
Q 001047 228 DNNVGLLTGDSAINR-------EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDIS-RGTVWEEIII 299 (1174)
Q Consensus 228 ~~~v~lltGd~~~~~-------~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~-~g~~~e~ii~ 299 (1174)
...++.++|+..... .++|+|+||+.|.+++............+.++++|||||||++.+.. +...+..++.
T Consensus 110 ~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~ 189 (216)
T 3b6e_A 110 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 189 (216)
T ss_dssp TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHHH
T ss_pred CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHHH
Confidence 357888888776543 48899999999999887632111011456789999999999998653 3333333332
Q ss_pred HC-------------CCCccEEEEccc
Q 001047 300 YC-------------PKEVQIICLSAT 313 (1174)
Q Consensus 300 ~l-------------~~~~qiI~LSAT 313 (1174)
.. .+.+++|+||||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 190 QKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HhcccccccccccCCCCcceEEEeecC
Confidence 21 157899999998
No 77
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.84 E-value=3.9e-19 Score=216.88 Aligned_cols=134 Identities=17% Similarity=0.172 Sum_probs=109.9
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC--C
Q 001047 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG--D 228 (1174)
Q Consensus 151 ~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g--~ 228 (1174)
.-+...++.|+++|..+++.+++|+ |+.+.||+|||++|.+|++.....|..++|++||+.||.|.+..+..++. +
T Consensus 71 As~R~lG~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lG 148 (997)
T 2ipc_A 71 SAKRYLGMRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLG 148 (997)
T ss_dssp HHHHHTCCCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 3455678899999999999999998 99999999999999999976666788999999999999999999887643 4
Q ss_pred CeEEEEeCCCCCC-----CCCcEEEEcHHHH-HHHHhcccccccCCCCCC---ceeEEEEccccccc
Q 001047 229 NNVGLLTGDSAIN-----REAQILIMTTEIL-RNMLYQSVGMVSSESGLF---DVDVIVLDEVHYLS 286 (1174)
Q Consensus 229 ~~v~lltGd~~~~-----~~~~IlV~Tpe~L-~~~L~~~~~~~~~~~~l~---~v~lVIiDEaH~l~ 286 (1174)
+++++++|+.+.. ..++|+|+||+.| .++|......-.....++ ++.++||||||.|+
T Consensus 149 Lsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 149 LSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred CeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 6899999987532 2689999999999 777765421111234566 89999999999987
No 78
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.82 E-value=3.3e-20 Score=208.33 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=122.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCC-eEEEEcccHHHHHHHHHHHHHHhCC--CeEE
Q 001047 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR-RIFYTTPLKALSNQKFREFRETFGD--NNVG 232 (1174)
Q Consensus 156 ~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~-rvlvl~PtraLa~Q~~~~l~~~~g~--~~v~ 232 (1174)
..+.|+++|.++++.++.+++.++++|||+|||+++..++...+..+. ++||++|+++|++|+++++.+.+.. ..++
T Consensus 110 ~~~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~ 189 (282)
T 1rif_A 110 KRIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIK 189 (282)
T ss_dssp EECCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEE
T ss_pred CccCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEE
Confidence 346899999999999998888999999999999999988887766554 9999999999999999999986432 3566
Q ss_pred EEeCCCCCC----CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEE
Q 001047 233 LLTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQII 308 (1174)
Q Consensus 233 lltGd~~~~----~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI 308 (1174)
.+.|+.... ...+|+|+||+.+.+.. ...+.++++||+||||++.+ ..+..++..+....+++
T Consensus 190 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~---------~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l 256 (282)
T 1rif_A 190 KIGGGASKDDKYKNDAPVVVGTWQTVVKQP---------KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKF 256 (282)
T ss_dssp ECSTTCSSTTCCCTTCSEEEECHHHHTTSC---------GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEE
T ss_pred EEeCCCcchhhhccCCcEEEEchHHHHhhH---------HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEE
Confidence 676665544 67899999999875431 23467899999999999863 47777888887789999
Q ss_pred EEccccCCh
Q 001047 309 CLSATVANA 317 (1174)
Q Consensus 309 ~LSATl~n~ 317 (1174)
+||||++|.
T Consensus 257 ~lSATp~~~ 265 (282)
T 1rif_A 257 GLSGSLRDG 265 (282)
T ss_dssp EECSSCCTT
T ss_pred EEeCCCCCc
Confidence 999999875
No 79
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.82 E-value=6.5e-20 Score=200.12 Aligned_cols=165 Identities=20% Similarity=0.250 Sum_probs=128.7
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh-cC----CeEEEEcccHHHHHHHHHHHHHH
Q 001047 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQ----RRIFYTTPLKALSNQKFREFRET 225 (1174)
Q Consensus 151 ~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g----~rvlvl~PtraLa~Q~~~~l~~~ 225 (1174)
.+.....++++++|.++++.+.+|++++++||||||||+++.++++..+. .+ .+++|++|+++|+.|+++.+...
T Consensus 53 ~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~ 132 (235)
T 3llm_A 53 ILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFE 132 (235)
T ss_dssp HHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHH
Confidence 34445567789999999999999999999999999999999888887654 22 38999999999999999999887
Q ss_pred hCCC---eEEEEeCCC-CC-CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccc-ccCCcH-HHHHHHH
Q 001047 226 FGDN---NVGLLTGDS-AI-NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL-SDISRG-TVWEEII 298 (1174)
Q Consensus 226 ~g~~---~v~lltGd~-~~-~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l-~d~~~g-~~~e~ii 298 (1174)
++.. .+|.-.... .. ..+++|+|+||++|.+++.. .+.++++|||||||.+ .+.++. ..+..++
T Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~---------~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~ 203 (235)
T 3llm_A 133 RGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA---------GIRGISHVIVDEIHERDINTDFLLVVLRDVV 203 (235)
T ss_dssp TTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH---------CCTTCCEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred hccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh---------hhcCCcEEEEECCccCCcchHHHHHHHHHHH
Confidence 6532 344322221 12 25689999999999999864 3789999999999996 454555 3556666
Q ss_pred HHCCCCccEEEEccccCChHHHHHHHhc
Q 001047 299 IYCPKEVQIICLSATVANADELAGWIGQ 326 (1174)
Q Consensus 299 ~~l~~~~qiI~LSATl~n~~~~~~~l~~ 326 (1174)
... ++.|+++||||+++.. +++|+..
T Consensus 204 ~~~-~~~~~il~SAT~~~~~-~~~~~~~ 229 (235)
T 3llm_A 204 QAY-PEVRIVLMSATIDTSM-FCEYFFN 229 (235)
T ss_dssp HHC-TTSEEEEEECSSCCHH-HHHHTTS
T ss_pred hhC-CCCeEEEEecCCCHHH-HHHHcCC
Confidence 655 4799999999997655 9999864
No 80
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.78 E-value=1.7e-18 Score=211.63 Aligned_cols=126 Identities=18% Similarity=0.307 Sum_probs=87.4
Q ss_pred CCCCCCHHHHHHHHH----HHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeE
Q 001047 156 YDFRIDKFQRSSIEA----FLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNV 231 (1174)
Q Consensus 156 ~~~~~~~~Q~~ai~~----ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v 231 (1174)
.+|.|+|+|.+++.. +..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|+++++.. ++ .++
T Consensus 4 ~~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---~~~~~~~~~t~~l~~q~~~~~~~-l~-~~~ 78 (540)
T 2vl7_A 4 LKLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---KKKVLIFTRTHSQLDSIYKNAKL-LG-LKT 78 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---TCEEEEEESCHHHHHHHHHHHGG-GT-CCE
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---CCcEEEEcCCHHHHHHHHHHHHh-cC-CcE
Confidence 456899999998654 5688999999999999999999998654 78999999999999999999887 33 233
Q ss_pred EEEeCCCC------------------------------------------------------CCCCCcEEEEcHHHHHHH
Q 001047 232 GLLTGDSA------------------------------------------------------INREAQILIMTTEILRNM 257 (1174)
Q Consensus 232 ~lltGd~~------------------------------------------------------~~~~~~IlV~Tpe~L~~~ 257 (1174)
.++.|... ....++|+|+|+..|.+.
T Consensus 79 ~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~ 158 (540)
T 2vl7_A 79 GFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQK 158 (540)
T ss_dssp EEC---------------------------------------------------------CTTGGGCSEEEEETHHHHSH
T ss_pred EEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCH
Confidence 33333110 013579999999998874
Q ss_pred Hhccc-ccccCCCCCCceeEEEEccccccc
Q 001047 258 LYQSV-GMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 258 L~~~~-~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
..... +.......+.+..+|||||||++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 159 PIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 43211 000001134678899999999994
No 81
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.78 E-value=1.3e-18 Score=178.64 Aligned_cols=111 Identities=23% Similarity=0.348 Sum_probs=103.0
Q ss_pred CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHH
Q 001047 439 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 518 (1174)
Q Consensus 439 ~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~ 518 (1174)
.+..++||||+++..|+.++..|...++ .+..+||+|++.+|..++
T Consensus 33 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~hg~~~~~~r~~~~ 78 (163)
T 2hjv_A 33 ENPDSCIIFCRTKEHVNQLTDELDDLGY----------------------------------PCDKIHGGMIQEDRFDVM 78 (163)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEEECTTSCHHHHHHHH
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHHcCC----------------------------------cEEEEeCCCCHHHHHHHH
Confidence 4567999999999999999999986654 689999999999999999
Q ss_pred HHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 519 ~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
+.|++|.++|||||+++++|+|+|++++||+ ++.|.++.+|+||+||+||.| ..|.+++++++.+
T Consensus 79 ~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~--------~~~p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~ 143 (163)
T 2hjv_A 79 NEFKRGEYRYLVATDVAARGIDIENISLVIN--------YDLPLEKESYVHRTGRTGRAG--NKGKAISFVTAFE 143 (163)
T ss_dssp HHHHTTSCSEEEECGGGTTTCCCSCCSEEEE--------SSCCSSHHHHHHHTTTSSCTT--CCEEEEEEECGGG
T ss_pred HHHHcCCCeEEEECChhhcCCchhcCCEEEE--------eCCCCCHHHHHHhccccCcCC--CCceEEEEecHHH
Confidence 9999999999999999999999999999999 899999999999999999999 6899998887654
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=181.68 Aligned_cols=122 Identities=21% Similarity=0.239 Sum_probs=105.5
Q ss_pred HHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCC
Q 001047 430 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509 (1174)
Q Consensus 430 ~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl 509 (1174)
...+..+......++||||+++..|+.++..|...++ .+..+||+|
T Consensus 43 ~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~----------------------------------~~~~lhg~~ 88 (191)
T 2p6n_A 43 MVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGV----------------------------------EAVAIHGGK 88 (191)
T ss_dssp HHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTC----------------------------------CEEEECTTS
T ss_pred HHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCC----------------------------------cEEEEeCCC
Confidence 3444555545557899999999999999999976554 688999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEe
Q 001047 510 LPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ 589 (1174)
Q Consensus 510 ~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~ 589 (1174)
++.+|..+++.|++|.++|||||+++++|+|+|++++||+ ++.|.++.+|+||+|||||.| ..|.+++++
T Consensus 89 ~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~--------~d~p~~~~~~~qr~GR~gR~g--~~g~~i~l~ 158 (191)
T 2p6n_A 89 DQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVIN--------YDMPEEIENYVHRIGRTGCSG--NTGIATTFI 158 (191)
T ss_dssp CHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE--------SSCCSSHHHHHHHHTTSCC-----CCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE--------eCCCCCHHHHHHHhCccccCC--CCcEEEEEE
Confidence 9999999999999999999999999999999999999999 899999999999999999999 689999998
Q ss_pred CCCCCH
Q 001047 590 TPYEGA 595 (1174)
Q Consensus 590 ~~~~~~ 595 (1174)
++.++.
T Consensus 159 ~~~~~~ 164 (191)
T 2p6n_A 159 NKACDE 164 (191)
T ss_dssp CTTSCH
T ss_pred cCchhH
Confidence 876433
No 83
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.78 E-value=7.7e-19 Score=181.86 Aligned_cols=113 Identities=18% Similarity=0.223 Sum_probs=104.2
Q ss_pred HhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHH
Q 001047 437 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSF 516 (1174)
Q Consensus 437 ~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~ 516 (1174)
......++||||+++..|+.++..|...++ ++..+||+|++.+|..
T Consensus 27 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~hg~~~~~~r~~ 72 (172)
T 1t5i_A 27 DVLEFNQVVIFVKSVQRCIALAQLLVEQNF----------------------------------PAIAIHRGMPQEERLS 72 (172)
T ss_dssp HHSCCSSEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEEECTTSCHHHHHH
T ss_pred HhCCCCcEEEEECCHHHHHHHHHHHHhcCC----------------------------------CEEEEECCCCHHHHHH
Confidence 344667999999999999999999986654 6899999999999999
Q ss_pred HHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 517 IEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 517 v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
+++.|++|.++|||||+++++|+|+|++++||+ ++.|.++.+|+||+|||||.| ..|.+++++++.+
T Consensus 73 ~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~--------~d~p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 73 RYQQFKDFQRRILVATNLFGRGMDIERVNIAFN--------YDMPEDSDTYLHRVARAGRFG--TKGLAITFVSDEN 139 (172)
T ss_dssp HHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE--------SSCCSSHHHHHHHHHHHTGGG--CCCEEEEEECSHH
T ss_pred HHHHHHCCCCcEEEECCchhcCcchhhCCEEEE--------ECCCCCHHHHHHHhcccccCC--CCcEEEEEEcChh
Confidence 999999999999999999999999999999999 899999999999999999999 6899999987754
No 84
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.78 E-value=1.1e-18 Score=187.09 Aligned_cols=111 Identities=25% Similarity=0.300 Sum_probs=101.9
Q ss_pred CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHH
Q 001047 439 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 518 (1174)
Q Consensus 439 ~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~ 518 (1174)
...+++||||+++..++.++..|...++ .+.++||+|++.+|..++
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~----------------------------------~~~~lhg~~~~~~r~~~~ 74 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGH----------------------------------PAQALHGDLSQGERERVL 74 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTC----------------------------------CEEEECSSSCHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCC----------------------------------CEEEEECCCCHHHHHHHH
Confidence 4567999999999999999999976554 689999999999999999
Q ss_pred HHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 519 ~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
+.|++|.++|||||+++++|||+|++++||+ ++.|.++..|+||+|||||.| ..|.|++++++.+
T Consensus 75 ~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~--------~~~p~~~~~~~qr~GR~gR~g--~~g~~~~l~~~~~ 139 (212)
T 3eaq_A 75 GAFRQGEVRVLVATDVAARGLDIPQVDLVVH--------YRLPDRAEAYQHRSGRTGRAG--RGGRVVLLYGPRE 139 (212)
T ss_dssp HHHHSSSCCEEEECTTTTCSSSCCCBSEEEE--------SSCCSSHHHHHHHHTTBCCCC----BEEEEEECGGG
T ss_pred HHHHCCCCeEEEecChhhcCCCCccCcEEEE--------CCCCcCHHHHHHHhcccCCCC--CCCeEEEEEchhH
Confidence 9999999999999999999999999999999 899999999999999999999 6799999998754
No 85
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=180.85 Aligned_cols=120 Identities=21% Similarity=0.194 Sum_probs=102.1
Q ss_pred HHHHHHHHh-CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCC
Q 001047 430 IDTLWHLRS-RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 508 (1174)
Q Consensus 430 ~~~l~~l~~-~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsg 508 (1174)
...+..+.. ....++||||+++..|+.++..|...++ ++..+||+
T Consensus 22 ~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~~g~ 67 (175)
T 2rb4_A 22 YQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGH----------------------------------QVSLLSGE 67 (175)
T ss_dssp HHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTC----------------------------------CEEEECSS
T ss_pred HHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC----------------------------------cEEEEeCC
Confidence 334444433 3567899999999999999999986654 69999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccc------cCHHHHHHhhcccCCCCCCCc
Q 001047 509 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ------LTSNELFQMAGRAGRRGIDNR 582 (1174)
Q Consensus 509 l~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p------~s~~~y~Qr~GRAGR~G~d~~ 582 (1174)
|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ ++.| .+..+|+||+|||||.| ..
T Consensus 68 ~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~--------~d~p~~~~~~~~~~~~~qr~GR~gR~g--~~ 137 (175)
T 2rb4_A 68 LTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVN--------FDLPVKQGEEPDYETYLHRIGRTGRFG--KK 137 (175)
T ss_dssp CCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEE--------SSCCC--CCSCCHHHHHHHHCBC------CC
T ss_pred CCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEE--------eCCCCCccccCCHHHHHHHhcccccCC--CC
Confidence 99999999999999999999999999999999999999999 7777 89999999999999998 78
Q ss_pred cEEEEEeCCCC
Q 001047 583 GHVVLVQTPYE 593 (1174)
Q Consensus 583 G~~ill~~~~~ 593 (1174)
|.+++++++.+
T Consensus 138 g~~~~~~~~~~ 148 (175)
T 2rb4_A 138 GLAFNMIEVDE 148 (175)
T ss_dssp EEEEEEECGGG
T ss_pred ceEEEEEccch
Confidence 99999887754
No 86
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.77 E-value=1.5e-18 Score=178.36 Aligned_cols=112 Identities=21% Similarity=0.297 Sum_probs=98.7
Q ss_pred hCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHH
Q 001047 438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 517 (1174)
Q Consensus 438 ~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v 517 (1174)
.....++||||+++..|+.++..|...++ ++..+||+|++.+|..+
T Consensus 27 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~~~~~~~~~r~~~ 72 (165)
T 1fuk_A 27 SISVTQAVIFCNTRRKVEELTTKLRNDKF----------------------------------TVSAIYSDLPQQERDTI 72 (165)
T ss_dssp HTTCSCEEEEESSHHHHHHHHHHHHHTTC----------------------------------CEEEECTTSCHHHHHHH
T ss_pred hCCCCCEEEEECCHHHHHHHHHHHHHcCC----------------------------------CEEEEECCCCHHHHHHH
Confidence 34567999999999999999999976554 68999999999999999
Q ss_pred HHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 518 EELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 518 ~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
++.|++|.++|||||+++++|+|+|++++||+ ++.|.++.+|+||+|||||.| ..|.|++++++.+
T Consensus 73 ~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~--------~~~p~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~ 138 (165)
T 1fuk_A 73 MKEFRSGSSRILISTDLLARGIDVQQVSLVIN--------YDLPANKENYIHRIGRGGRFG--RKGVAINFVTNED 138 (165)
T ss_dssp HHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE--------SSCCSSGGGGGGSSCSCC-------CEEEEEEETTT
T ss_pred HHHHHcCCCEEEEEcChhhcCCCcccCCEEEE--------eCCCCCHHHHHHHhcccccCC--CCceEEEEEcchH
Confidence 99999999999999999999999999999999 889999999999999999999 7899998887654
No 87
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.76 E-value=3.2e-18 Score=186.71 Aligned_cols=143 Identities=23% Similarity=0.234 Sum_probs=116.0
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEe
Q 001047 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLT 235 (1174)
Q Consensus 156 ~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~llt 235 (1174)
+.+.|+++|.++++.+++++++++++|||+|||+++..++... +.+++|++|+++|++|+++++.+ |+...++.++
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~~ 165 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFS 165 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEES
T ss_pred CCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEEe
Confidence 4568999999999999999999999999999999998887654 78999999999999999999999 7643389998
Q ss_pred CCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEccccC
Q 001047 236 GDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 236 Gd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
|+.. ...+|+|+|++.+...... ...++++|||||||++.+..+ ..++..++ ..++|+||||+.
T Consensus 166 g~~~--~~~~i~v~T~~~l~~~~~~---------~~~~~~llIiDEaH~l~~~~~----~~i~~~~~-~~~~l~LSATp~ 229 (237)
T 2fz4_A 166 GRIK--ELKPLTVSTYDSAYVNAEK---------LGNRFMLLIFDEVHHLPAESY----VQIAQMSI-APFRLGLTATFE 229 (237)
T ss_dssp SSCB--CCCSEEEEEHHHHHHTHHH---------HTTTCSEEEEECSSCCCTTTH----HHHHHTCC-CSEEEEEEESCC
T ss_pred CCCC--CcCCEEEEeHHHHHhhHHH---------hcccCCEEEEECCccCCChHH----HHHHHhcc-CCEEEEEecCCC
Confidence 8764 4679999999998765532 124689999999999986544 34555554 678999999997
Q ss_pred ChH
Q 001047 316 NAD 318 (1174)
Q Consensus 316 n~~ 318 (1174)
+.+
T Consensus 230 r~D 232 (237)
T 2fz4_A 230 RED 232 (237)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 88
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.74 E-value=5e-18 Score=177.81 Aligned_cols=110 Identities=18% Similarity=0.229 Sum_probs=88.5
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
...++||||+++..|+.++..|...++ ++..+||+|++.+|..+++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~----------------------------------~~~~lhg~~~~~~r~~~~~ 90 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGY----------------------------------ACTSIHGDRSQRDREEALH 90 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTC----------------------------------CEEEEC--------CHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCC----------------------------------ceEEEeCCCCHHHHHHHHH
Confidence 457899999999999999999976554 6899999999999999999
Q ss_pred HHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
.|++|.++|||||+++++|+|+|++++||+ ++.|.++.+|+||+|||||.| ..|.|++++++.+
T Consensus 91 ~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~--------~d~p~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~ 154 (185)
T 2jgn_A 91 QFRSGKSPILVATAVAARGLDISNVKHVIN--------FDLPSDIEEYVHRIGRTGRVG--NLGLATSFFNERN 154 (185)
T ss_dssp HHHHTSSSEEEEEC------CCCSBSEEEE--------SSCCSSHHHHHHHHTTBCCTT--SCEEEEEEECGGG
T ss_pred HHHcCCCeEEEEcChhhcCCCcccCCEEEE--------eCCCCCHHHHHHHccccCCCC--CCcEEEEEEchhh
Confidence 999999999999999999999999999999 899999999999999999999 6899999887644
No 89
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.74 E-value=7.6e-18 Score=189.27 Aligned_cols=111 Identities=25% Similarity=0.304 Sum_probs=99.2
Q ss_pred CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHH
Q 001047 439 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 518 (1174)
Q Consensus 439 ~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~ 518 (1174)
....++||||+++..++.++..|...++ .+.++||+|++.+|+.++
T Consensus 26 ~~~~~~LVF~~t~~~~~~l~~~L~~~g~----------------------------------~~~~lhg~l~~~~r~~~~ 71 (300)
T 3i32_A 26 ASPDRAMVFTRTKAETEEIAQGLLRLGH----------------------------------PAQALHGDMSQGERERVM 71 (300)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHTTTC----------------------------------CEEEECSCCCTHHHHHHH
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHhCCC----------------------------------CEEEEeCCCCHHHHHHHH
Confidence 3568999999999999999999976654 789999999999999999
Q ss_pred HHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 519 ~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
+.|++|.++|||||+++++|||+|++++||+ ++.|.+...|+||+|||||.| ..|.|++++++.+
T Consensus 72 ~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~--------~d~p~s~~~y~Qr~GRagR~g--~~G~~i~l~~~~e 136 (300)
T 3i32_A 72 GAFRQGEVRVLVATDVAARGLDIPQVDLVVH--------YRMPDRAEAYQHRSGRTGRAG--RGGRVVLLYGPRE 136 (300)
T ss_dssp HHHHHTSCCEEEECSTTTCSTTCCCCSEEEE--------SSCCSSTTHHHHHHTCCC-------CEEEEEECSST
T ss_pred HHhhcCCceEEEEechhhcCccccceeEEEE--------cCCCCCHHHHHHHccCcCcCC--CCceEEEEeChHH
Confidence 9999999999999999999999999999999 889999999999999999999 6799999998765
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.71 E-value=4.9e-16 Score=190.58 Aligned_cols=123 Identities=18% Similarity=0.244 Sum_probs=96.1
Q ss_pred CCCCCHHHHHHHHH----HHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHh--CCCe
Q 001047 157 DFRIDKFQRSSIEA----FLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETF--GDNN 230 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~----ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~--g~~~ 230 (1174)
+|+++|.|.+.+.. +..|+++++.||||+|||++|++|++. .+.+++|++||++|+.|+.+++.... ...+
T Consensus 1 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~ 77 (551)
T 3crv_A 1 MVKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---VKPKVLFVVRTHNEFYPIYRDLTKIREKRNIT 77 (551)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCcc
Confidence 36899999997764 557899999999999999999999987 47899999999999999999888742 2356
Q ss_pred EEEEeCCCCC----------------------------------------------------------CCCCcEEEEcHH
Q 001047 231 VGLLTGDSAI----------------------------------------------------------NREAQILIMTTE 252 (1174)
Q Consensus 231 v~lltGd~~~----------------------------------------------------------~~~~~IlV~Tpe 252 (1174)
+.++.|.... ...++|||+|+.
T Consensus 78 ~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~ 157 (551)
T 3crv_A 78 FSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYP 157 (551)
T ss_dssp EEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETH
T ss_pred EEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCch
Confidence 6677663210 125799999999
Q ss_pred HHHHHHhcccccccCCCCCCceeEEEEcccccccc
Q 001047 253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287 (1174)
Q Consensus 253 ~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d 287 (1174)
.|.+...+.. .....+..+|||||||+|.+
T Consensus 158 ~l~~~~~~~~-----~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 158 YFFIDRYREF-----IDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHCHHHHTT-----SCCCSTTEEEEETTGGGGGG
T ss_pred HhcCHHHHHh-----cCCCcCCeEEEEecccchHH
Confidence 9988754321 11224678999999999987
No 91
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.51 E-value=2.1e-18 Score=178.32 Aligned_cols=110 Identities=17% Similarity=0.297 Sum_probs=100.6
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
...++||||+++..|+.++..|...++ ++..+||+|++.+|..+++
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~~----------------------------------~~~~~~g~~~~~~r~~~~~ 74 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAGI----------------------------------NNCYLEGEMVQGKRNEAIK 74 (170)
Confidence 456899999999999999998875543 6888999999999999999
Q ss_pred HHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
.|++|.++|||||+++++|+|+|++++||+ ++.|.++.+|+||+|||||.| ..|.+++++++.+
T Consensus 75 ~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~--------~~~p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~ 138 (170)
T 2yjt_D 75 RLTEGRVNVLVATDVAARGIDIPDVSHVFN--------FDMPRSGDTYLHRIGRTARAG--RKGTAISLVEAHD 138 (170)
Confidence 999999999999999999999999999999 889999999999999999998 6899998887643
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.57 E-value=7.5e-14 Score=172.58 Aligned_cols=68 Identities=22% Similarity=0.429 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHH----HHHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHH
Q 001047 158 FRIDKFQRSSIE----AFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKFREFRET 225 (1174)
Q Consensus 158 ~~~~~~Q~~ai~----~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~~~l~~~ 225 (1174)
|.|+|.|.+.+. ++.+|+++++.||||+|||++|++|++..+. .+.+++|++||++|+.|+.+++...
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHH
Confidence 578999999886 4568899999999999999999999988764 4789999999999999999998774
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.37 E-value=1.3e-12 Score=144.97 Aligned_cols=121 Identities=16% Similarity=-0.008 Sum_probs=89.1
Q ss_pred HHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhc-CCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecC
Q 001047 429 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC-NLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 507 (1174)
Q Consensus 429 ~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~-~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hs 507 (1174)
+.+++..+.. .+.++|||+.++..++.+...|... |+ .+..+||
T Consensus 101 L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~L~~~~g~----------------------------------~~~~l~G 145 (271)
T 1z5z_A 101 TMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELNT----------------------------------EVPFLYG 145 (271)
T ss_dssp HHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHCS----------------------------------CCCEECT
T ss_pred HHHHHHHHHh-CCCeEEEEeccHHHHHHHHHHHHHhcCC----------------------------------cEEEEEC
Confidence 3444444433 4579999999999999999888642 43 5788999
Q ss_pred CCCHHHHHHHHHHHhcC-Cce-EEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEE
Q 001047 508 GCLPIWKSFIEELFQRG-LVK-VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 585 (1174)
Q Consensus 508 gl~~~~R~~v~~~F~~G-~ik-VLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ 585 (1174)
++++.+|+.+++.|++| .++ +|++|+++++|+|++++++||+ ++.|+++..|.|++||++|.|+.....+
T Consensus 146 ~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~--------~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v 217 (271)
T 1z5z_A 146 ELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH--------FDRWWNPAVEDQATDRVYRIGQTRNVIV 217 (271)
T ss_dssp TSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEE--------CSCCSCTTTC--------------CCEE
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEE--------ECCCCChhHHHHHHHhccccCCCCceEE
Confidence 99999999999999998 777 7999999999999999999999 9999999999999999999998777777
Q ss_pred EEEeCCC
Q 001047 586 VLVQTPY 592 (1174)
Q Consensus 586 ill~~~~ 592 (1174)
+.+.+..
T Consensus 218 ~~li~~~ 224 (271)
T 1z5z_A 218 HKLISVG 224 (271)
T ss_dssp EEEEETT
T ss_pred EEEeeCC
Confidence 7666543
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.49 E-value=1.9e-07 Score=115.32 Aligned_cols=141 Identities=16% Similarity=0.178 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHcCCcEEEEccCCcchHH--HHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEE-Ee
Q 001047 161 DKFQRSSIEAFLRGSSVVVSAPTSSGKTL--IAEAAAVATV--ANQRRIFYTTPLKALSNQKFREFRETFGDNNVGL-LT 235 (1174)
Q Consensus 161 ~~~Q~~ai~~ll~g~~vlv~apTGsGKTl--v~~~~il~~l--~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~l-lt 235 (1174)
++.|+.|++.++.++.+++.|++|+|||+ .++++++..+ ..+.++++++||..++.++.+.+........+.. ..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~ 230 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 68999999999999999999999999994 4555555544 3456999999999999998877665321110000 00
Q ss_pred CCCC--CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEccc
Q 001047 236 GDSA--INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSAT 313 (1174)
Q Consensus 236 Gd~~--~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSAT 313 (1174)
.... ...-..++-.+|+... ..+. ......+++||||||+++. ...+..++..++.+.|+|++-=.
T Consensus 231 ~~~~~~~~Tih~ll~~~~~~~~-~~~~-------~~~~l~~d~lIIDEAsml~----~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 231 KRIPEDASTLHRLLGAQPGSQR-LRHH-------AGNPLHLDVLVVDEASMID----LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp CSCSCCCBTTTSCC------------C-------TTSCCSCSEEEECSGGGCB----HHHHHHHHHTCCTTCEEEEEECT
T ss_pred hccchhhhhhHhhhccCCCchH-HHhc-------cCCCCCCCEEEEechhhCC----HHHHHHHHHhCCCCCEEEEEcch
Confidence 0000 0000112222332211 1111 1112378999999999653 45667788888888888887533
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.15 E-value=6.6e-06 Score=100.51 Aligned_cols=127 Identities=14% Similarity=0.143 Sum_probs=86.2
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeC
Q 001047 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltG 236 (1174)
++.+++.|.+|+..++.++.++|.||.|+|||++....+......+.++++++||...+..+.+.+ +. .
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~----~~-~------ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT----GR-T------ 255 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH----TS-C------
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh----cc-c------
Confidence 778999999999999999999999999999998765554444457889999999998887665433 21 0
Q ss_pred CCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 237 d~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
..|...+..... . .+..........++|||||++++. ...+..++..++...++|++-
T Consensus 256 -----------a~Tih~ll~~~~-~-~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 256 -----------ASTVHRLLGYGP-Q-GFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp -----------EEEHHHHTTEET-T-EESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEEEE
T ss_pred -----------HHHHHHHHcCCc-c-hhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEEEe
Confidence 122222211100 0 000012233468999999999975 345666777777777776653
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.83 E-value=3.1e-05 Score=96.55 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=59.9
Q ss_pred CCCCHHHHHHHHHHHcCC-cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 001047 158 FRIDKFQRSSIEAFLRGS-SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g~-~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
..+++-|.+|+..++..+ -.||.||.|+|||.+....|.+.+.++.++|+++||..-+.++.+++..
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHh
Confidence 458999999999988655 5789999999999988888888888999999999999999999999876
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.83 E-value=8.1e-05 Score=88.76 Aligned_cols=128 Identities=15% Similarity=0.227 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHHHc----C-CcEEEEccCCcchHHHHHHHHHHHHhcCC-eEEEEcccHHHHHHHHHHHHHHhCCCeEE
Q 001047 159 RIDKFQRSSIEAFLR----G-SSVVVSAPTSSGKTLIAEAAAVATVANQR-RIFYTTPLKALSNQKFREFRETFGDNNVG 232 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~----g-~~vlv~apTGsGKTlv~~~~il~~l~~g~-rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ 232 (1174)
.+++-|++|+..++. + ..++|.|+.|||||.+....+......+. ++++++||...+..+...+ + ..+.
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~----~-~~~~ 99 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS----G-KEAS 99 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH----S-SCEE
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh----c-cchh
Confidence 589999999997653 2 38999999999999887655555555565 7999999998877665443 2 1111
Q ss_pred EEeCCCC----CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEE
Q 001047 233 LLTGDSA----INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQII 308 (1174)
Q Consensus 233 lltGd~~----~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI 308 (1174)
.++.-.. .......+.. .....+..+++|||||+|.+. ...+..++..++...+++
T Consensus 100 T~h~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~iiiDE~~~~~----~~~~~~l~~~~~~~~~~~ 159 (459)
T 3upu_A 100 TIHSILKINPVTYEENVLFEQ----------------KEVPDLAKCRVLICDEVSMYD----RKLFKILLSTIPPWCTII 159 (459)
T ss_dssp EHHHHHTEEEEECSSCEEEEE----------------CSCCCCSSCSEEEESCGGGCC----HHHHHHHHHHSCTTCEEE
T ss_pred hHHHHhccCcccccccchhcc----------------cccccccCCCEEEEECchhCC----HHHHHHHHHhccCCCEEE
Confidence 1110000 0000011000 012345678999999999874 345566666676556555
Q ss_pred EEc
Q 001047 309 CLS 311 (1174)
Q Consensus 309 ~LS 311 (1174)
++-
T Consensus 160 ~vG 162 (459)
T 3upu_A 160 GIG 162 (459)
T ss_dssp EEE
T ss_pred EEC
Confidence 553
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.74 E-value=0.00012 Score=90.54 Aligned_cols=66 Identities=12% Similarity=0.241 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHH
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
.+++.|.+|+..++.+..++|.||+|+|||.+....+...+. .+.++++++||...+.++.+.+.+
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 589999999999988888999999999999887665555554 578999999999999999988876
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00016 Score=91.57 Aligned_cols=67 Identities=15% Similarity=0.309 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHH
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKFREFRET 225 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~~~l~~~ 225 (1174)
.+++.|.+|+..++.+..++|.||.|+|||.+....+...+. .+.++++++||...+.++.+++.+.
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 578999999999988778899999999999887665554444 5789999999999999999998873
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.55 E-value=0.00029 Score=89.08 Aligned_cols=67 Identities=12% Similarity=0.218 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHH
Q 001047 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
..+++.|.+|+..++.+..++|.||+|+|||.+....+...+. .+.++++++||...+.++.+.+.+
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 3589999999999988888999999999999887655555444 578999999999999999888876
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.22 E-value=0.0025 Score=79.39 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcC----CeEEEEcccHHHHHHHHHHHHHHhCC
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ----RRIFYTTPLKALSNQKFREFRETFGD 228 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g----~rvlvl~PtraLa~Q~~~~l~~~~g~ 228 (1174)
.+++-|.+|+.. .+..++|.|+.|||||.+...-+...+..+ .+++++++|+..+.++.+++.+.+|.
T Consensus 9 ~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 9 SLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp TCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 689999999973 356899999999999998887777777653 58999999999999999999987753
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.21 E-value=0.0025 Score=73.31 Aligned_cols=126 Identities=10% Similarity=0.181 Sum_probs=81.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHH-HHh-cCCeEEEEcccHHHHHHHHHHHHHHh---CC-C
Q 001047 156 YDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVA-TVA-NQRRIFYTTPLKALSNQKFREFRETF---GD-N 229 (1174)
Q Consensus 156 ~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~-~l~-~g~rvlvl~PtraLa~Q~~~~l~~~~---g~-~ 229 (1174)
.+|.++|+|...+..+...+-+++..+-+.|||.++...++. .+. .+..+++++|++.-|..++..+...+ +. .
T Consensus 160 ~p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll 239 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFL 239 (385)
T ss_dssp EECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTT
T ss_pred CCCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhh
Confidence 568899999999988765577899999999999886665554 333 45689999999999988887776643 21 1
Q ss_pred --eEEEEeCC-CCCCCCCcEEEEc--HHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHH
Q 001047 230 --NVGLLTGD-SAINREAQILIMT--TEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII 298 (1174)
Q Consensus 230 --~v~lltGd-~~~~~~~~IlV~T--pe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii 298 (1174)
.+...+.. .....+..|.+.+ |+.++. .+++++|+||+|.+.+ ....|..+.
T Consensus 240 ~~~~~~~~~~~I~f~nGs~i~~lsa~~~slrG---------------~~~~~viiDE~a~~~~--~~el~~al~ 296 (385)
T 2o0j_A 240 QPGIVEWNKGSIELDNGSSIGAYASSPDAVRG---------------NSFAMIYIEDCAFIPN--FHDSWLAIQ 296 (385)
T ss_dssp SCCEEEECSSEEEETTSCEEEEEECSHHHHHT---------------SCCSEEEEESGGGSTT--HHHHHHHHH
T ss_pred hhhhccCCccEEEeCCCCEEEEEECCCCCccC---------------CCCCEEEechhhhcCC--CHHHHHHHH
Confidence 11111110 1111234444333 333321 2568999999999864 234455443
No 103
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.92 E-value=0.013 Score=71.85 Aligned_cols=143 Identities=11% Similarity=0.166 Sum_probs=89.1
Q ss_pred cCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHH-HHHhc-CCeEEEEcccHHHHHHHHHHHHHHhCCCe--
Q 001047 155 IYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAV-ATVAN-QRRIFYTTPLKALSNQKFREFRETFGDNN-- 230 (1174)
Q Consensus 155 ~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il-~~l~~-g~rvlvl~PtraLa~Q~~~~l~~~~g~~~-- 230 (1174)
..++.++|+|...+..+...+.+++..+-|+|||.+....++ ..+.. +.++++++|++..+..++..++..+....
T Consensus 159 ~~~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~ 238 (592)
T 3cpe_A 159 VIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDF 238 (592)
T ss_dssp SBBCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTT
T ss_pred cccCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHh
Confidence 356889999999998876667899999999999987654443 33333 45899999999999999888877653221
Q ss_pred ----EEEEeC-CCCCCCCCcEEEEc--HHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCC-
Q 001047 231 ----VGLLTG-DSAINREAQILIMT--TEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP- 302 (1174)
Q Consensus 231 ----v~lltG-d~~~~~~~~IlV~T--pe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~- 302 (1174)
....+. ......+..|.+.+ |+.++. .+.+++|+||+|.+.+ ....|..+...+.
T Consensus 239 ~~~~~~~~~~~~i~~~nGs~i~~~s~~~~~lrG---------------~~~~~~iiDE~~~~~~--~~~l~~~~~~~l~~ 301 (592)
T 3cpe_A 239 LQPGIVEWNKGSIELDNGSSIGAYASSPDAVRG---------------NSFAMIYIEDCAFIPN--FHDSWLAIQPVISS 301 (592)
T ss_dssp TSCCEEEECSSEEEETTSCEEEEEECCHHHHHH---------------SCCSEEEEETGGGCTT--HHHHHHHHHHHHSS
T ss_pred hccccccCCccEEEecCCCEEEEEeCCCCCccC---------------CCcceEEEehhccCCc--hhHHHHHHHHHhcc
Confidence 111111 01111234443332 444332 1467999999999864 2355555543332
Q ss_pred -CCccEEEEccccC
Q 001047 303 -KEVQIICLSATVA 315 (1174)
Q Consensus 303 -~~~qiI~LSATl~ 315 (1174)
.+.+++..| |+.
T Consensus 302 ~~~~~ii~is-TP~ 314 (592)
T 3cpe_A 302 GRRSKIIITT-TPN 314 (592)
T ss_dssp SSCCEEEEEE-CCC
T ss_pred CCCceEEEEe-CCC
Confidence 234444433 543
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.83 E-value=0.0019 Score=66.70 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=33.1
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Ptr 212 (1174)
.|+-.++.||.|+|||+.++-.+......+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 3567889999999999998777777777888999999974
No 105
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.74 E-value=0.0026 Score=67.61 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=58.3
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTE 252 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe 252 (1174)
.|.-+++.|++|+|||+.++..+.....+|.+++++.|...= . +...+.--.| . ....+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~--r---------~~~~i~srlG-~---~~~~~~~~~~~ 75 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT--R---------SIRNIQSRTG-T---SLPSVEVESAP 75 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG--G---------GCSSCCCCCC-C---SSCCEEESSTH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc--h---------HHHHHHHhcC-C---CccccccCCHH
Confidence 456778899999999999888888887889999999886520 0 0000100001 0 01223455666
Q ss_pred HHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 253 ~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
.+...+.. ...-..+++|||||++.+.
T Consensus 76 ~i~~~i~~-------~~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 76 EILNYIMS-------NSFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp HHHHHHHS-------TTSCTTCCEEEECSGGGSC
T ss_pred HHHHHHHH-------HhhCCCCCEEEEecCccCc
Confidence 66666543 1112358999999999875
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.73 E-value=0.0082 Score=61.31 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHH---------cCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHH
Q 001047 161 DKFQRSSIEAFL---------RGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSNQKF 219 (1174)
Q Consensus 161 ~~~Q~~ai~~ll---------~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraLa~Q~~ 219 (1174)
++.|.+++..+. .|+.+++.||+|+|||..+...+-... ..|..++++ +...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~ 83 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF-DTKDLIFRLK 83 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE-EHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHH
Confidence 567777777654 468899999999999988765443333 345555554 3344444433
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.67 E-value=0.0028 Score=65.75 Aligned_cols=39 Identities=21% Similarity=0.134 Sum_probs=33.4
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Ptr 212 (1174)
|+-.++.+|+|||||+.++-.+.+...+|.+++++.|.+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 456788999999999998888888778899999999974
No 108
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.025 Score=63.26 Aligned_cols=123 Identities=11% Similarity=0.114 Sum_probs=64.6
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhc-------CCeEEEEc-ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVAN-------QRRIFYTT-PLKALSNQKFREFRETFGDNNVGLLTGDSAINREA 244 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~-------g~rvlvl~-PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~ 244 (1174)
.+.++++.||+|+|||.++-..+-+.-.. ...++++- ....=..+.+..+.+.+.+..+ +++
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~---~~~------- 113 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENL---CGD------- 113 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC-----CC-------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCC---Cch-------
Confidence 34689999999999998876654333221 12344442 2222223445555444432211 000
Q ss_pred cEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHH---CCCCccEEEEccccCChH
Q 001047 245 QILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY---CPKEVQIICLSATVANAD 318 (1174)
Q Consensus 245 ~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~---l~~~~qiI~LSATl~n~~ 318 (1174)
.+.+.|..++.... ..-...-+||+||+|++.+ ..++..++.. -...+-+|+.++|+.+++
T Consensus 114 ----~~~~~L~~~f~~~~------~~~~~~~ii~lDE~d~l~~---q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 114 ----ISLEALNFYITNVP------KAKKRKTLILIQNPENLLS---EKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp ----CCHHHHHHHHHHSC------GGGSCEEEEEEECCSSSCC---THHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred ----HHHHHHHHHHHHhh------hccCCceEEEEecHHHhhc---chHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 12345555544210 0123567899999999982 2233333321 223566788899987654
No 109
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.99 E-value=0.016 Score=67.32 Aligned_cols=107 Identities=14% Similarity=0.055 Sum_probs=65.4
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEIL 254 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~L 254 (1174)
+-.+|.|+.|||||....-. + ...+.+|++||++++..+.+.+.+. |. ......-|.|-+.+
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~----~-~~~~~lVlTpT~~aa~~l~~kl~~~-~~------------~~~~~~~V~T~dsf 223 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSR----V-NFEEDLILVPGRQAAEMIRRRANAS-GI------------IVATKDNVRTVDSF 223 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHH----C-CTTTCEEEESCHHHHHHHHHHHTTT-SC------------CCCCTTTEEEHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHH----h-ccCCeEEEeCCHHHHHHHHHHhhhc-Cc------------cccccceEEEeHHh
Confidence 35689999999999765332 2 2357899999999998887776442 11 01223448898876
Q ss_pred HHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEcc
Q 001047 255 RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 312 (1174)
Q Consensus 255 ~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSA 312 (1174)
+. +. ........++||||||-.+. .+ .+..++...+. .++|++--
T Consensus 224 L~---~~-----~~~~~~~~d~liiDE~sm~~---~~-~l~~l~~~~~~-~~vilvGD 268 (446)
T 3vkw_A 224 LM---NY-----GKGARCQFKRLFIDEGLMLH---TG-CVNFLVEMSLC-DIAYVYGD 268 (446)
T ss_dssp HH---TT-----TSSCCCCCSEEEEETGGGSC---HH-HHHHHHHHTTC-SEEEEEEC
T ss_pred hc---CC-----CCCCCCcCCEEEEeCcccCC---HH-HHHHHHHhCCC-CEEEEecC
Confidence 53 11 11111248999999998652 23 33344445443 55555543
No 110
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.92 E-value=0.047 Score=63.71 Aligned_cols=131 Identities=13% Similarity=0.088 Sum_probs=75.1
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTE 252 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe 252 (1174)
..+++++|+|+|||+.+...+......|.+++++. +.+.-+.+....+....+ +..+...... .|.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~g---v~~~~~~~~~---------dp~ 165 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIG---VQVYGEPNNQ---------NPI 165 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTT---CCEECCTTCS---------CHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcC---CceeeccccC---------CHH
Confidence 35788999999999887666555556778887765 555555555555555444 2222222111 132
Q ss_pred H-HHHHHhcccccccCCCCCCceeEEEEccccccc---cCCcHHHHHHHHHHCCCCccEEEEccccC-ChHHHHHHHh
Q 001047 253 I-LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS---DISRGTVWEEIIIYCPKEVQIICLSATVA-NADELAGWIG 325 (1174)
Q Consensus 253 ~-L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~---d~~~g~~~e~ii~~l~~~~qiI~LSATl~-n~~~~~~~l~ 325 (1174)
. +...+.. ....++++||||++-++. +...-..+..+...+.++.-++.++|+.. ++...+..+.
T Consensus 166 ~i~~~al~~--------a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 166 EIAKKGVDI--------FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp HHHHHHHHH--------TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred HHHHHHHHH--------HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 2 2222321 122478999999998754 22333445555555556666778888865 2334444443
No 111
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.83 E-value=0.005 Score=61.14 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=24.3
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
.++.+++.+|+|+|||..+...+-.....|.+++++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~ 70 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYI 70 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 678999999999999987655443332334444444
No 112
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.80 E-value=0.025 Score=59.23 Aligned_cols=39 Identities=18% Similarity=0.063 Sum_probs=33.4
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Ptr 212 (1174)
|+-.++.++.|+|||+.++-.+.+....|.+++++.|.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 445678999999999999888888888999999999976
No 113
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.74 E-value=0.03 Score=62.96 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=26.3
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
..+++.||+|+|||..+...+-.....+..++++..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 589999999999998876554444344666777654
No 114
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.62 E-value=0.021 Score=71.37 Aligned_cols=87 Identities=20% Similarity=0.191 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEE
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN----QRRIFYTTPLKALSNQKFREFRETFGDNNVGLL 234 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~----g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ll 234 (1174)
.+++-|.+|+.. .+..++|.|+.|||||.+...-+...+.. ..++++++.|+..+.++.+++.+.++..
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~----- 74 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRK----- 74 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTT-----
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcc-----
Confidence 588999999975 35789999999999999887766666543 3589999999999999999999876642
Q ss_pred eCCCCCCCCCcEEEEcHHHHHHHHh
Q 001047 235 TGDSAINREAQILIMTTEILRNMLY 259 (1174)
Q Consensus 235 tGd~~~~~~~~IlV~Tpe~L~~~L~ 259 (1174)
....+.|+|...+...+.
T Consensus 75 -------~~~~~~v~Tfhs~~~~il 92 (673)
T 1uaa_A 75 -------EARGLMISTFHTLGLDII 92 (673)
T ss_dssp -------TTTTSEEEEHHHHHHHHH
T ss_pred -------cccCCEEEeHHHHHHHHH
Confidence 123578899887765544
No 115
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.45 E-value=0.02 Score=59.01 Aligned_cols=39 Identities=21% Similarity=0.119 Sum_probs=33.8
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Pt 211 (1174)
.++-.++.+|.|||||.-.+..+-.....+.+++|+.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 356788999999999988888888888889999999886
No 116
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.33 E-value=0.031 Score=68.24 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHc--CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeC
Q 001047 159 RIDKFQRSSIEAFLR--GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~--g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltG 236 (1174)
.+|.-|.+|+..+.. ....++.|+-|.|||.+..+.+.... .+++|++|+.+-+....+ +.. .
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~---~~~~vtAP~~~a~~~l~~-~~~---~-------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA---GRAIVTAPAKASTDVLAQ-FAG---E-------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS---SCEEEECSSCCSCHHHHH-HHG---G--------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH---hCcEEECCCHHHHHHHHH-Hhh---C--------
Confidence 589999999999886 34678999999999987777665442 357999999976654332 221 1
Q ss_pred CCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEccccCC
Q 001047 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN 316 (1174)
Q Consensus 237 d~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n 316 (1174)
.|-+..|.-+.. .....++||||||=.+ ..+.+..++... ..++||-|+..
T Consensus 240 --------~i~~~~Pd~~~~-------------~~~~~dlliVDEAAaI----p~pll~~ll~~~----~~v~~~tTv~G 290 (671)
T 2zpa_A 240 --------KFRFIAPDALLA-------------SDEQADWLVVDEAAAI----PAPLLHQLVSRF----PRTLLTTTVQG 290 (671)
T ss_dssp --------GCCBCCHHHHHH-------------SCCCCSEEEEETGGGS----CHHHHHHHHTTS----SEEEEEEEBSS
T ss_pred --------CeEEeCchhhhh-------------CcccCCEEEEEchhcC----CHHHHHHHHhhC----CeEEEEecCCc
Confidence 144456665432 1236899999999886 456666666533 36999999854
No 117
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.32 E-value=0.04 Score=57.15 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=24.8
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
+.+++.||+|+|||..+....-.....+..++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 6899999999999988765444444455566554
No 118
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.32 E-value=0.041 Score=63.17 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=18.2
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
+..+++.||+|+|||..+...+
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~ 65 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVL 65 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 4689999999999998876544
No 119
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.26 E-value=0.019 Score=59.93 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=32.6
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Ptr 212 (1174)
.|.-.++++|.|||||+..+-.+.+....+.+++++.|.+
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 4566789999999999877766777777889999999965
No 120
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.24 E-value=0.038 Score=69.50 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc-C---CeEEEEcccHHHHHHHHHHHHHHhCCCeEEEE
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN-Q---RRIFYTTPLKALSNQKFREFRETFGDNNVGLL 234 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~-g---~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ll 234 (1174)
.+++-|.+|+.. .+..++|.|+.|||||.+...-+...+.. + .++++++.|+..+.++.+++.+.+|..
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~----- 83 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA----- 83 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG-----
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccc-----
Confidence 689999999875 35689999999999999887777777653 2 489999999999999999999876531
Q ss_pred eCCCCCCCCCcEEEEcHHHHHHHHhc
Q 001047 235 TGDSAINREAQILIMTTEILRNMLYQ 260 (1174)
Q Consensus 235 tGd~~~~~~~~IlV~Tpe~L~~~L~~ 260 (1174)
...+.|+|-..+...+.+
T Consensus 84 --------~~~~~v~Tfhs~~~~ilr 101 (724)
T 1pjr_A 84 --------AEDVWISTFHSMCVRILR 101 (724)
T ss_dssp --------GTTSEEEEHHHHHHHHHH
T ss_pred --------ccCcEEeeHHHHHHHHHH
Confidence 124678998877654443
No 121
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.06 E-value=0.043 Score=63.08 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=24.0
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhc--------CCeEEEEc
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVAN--------QRRIFYTT 209 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~--------g~rvlvl~ 209 (1174)
+.+++.||+|+|||..+...+-..... +..++++.
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 579999999999998875544332222 55666664
No 122
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.03 E-value=0.024 Score=75.55 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=71.0
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCC------eEEEEcccHHHHHHHHHHHHHHhCCCeE
Q 001047 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQR------RIFYTTPLKALSNQKFREFRETFGDNNV 231 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~------rvlvl~PtraLa~Q~~~~l~~~~g~~~v 231 (1174)
..+++-|.++|.. .+++++|.|.-|||||.+...-++..+..+. +++++++|++.++++.+++...++.. .
T Consensus 9 ~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~-~ 85 (1232)
T 3u4q_A 9 STWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKE-L 85 (1232)
T ss_dssp -CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHH-H
T ss_pred CCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHH-h
Confidence 5789999999986 3789999999999999998877777776543 89999999999999999998865421 0
Q ss_pred EEEeCCC-CC----CCCCcEEEEcHHHHHHHHhc
Q 001047 232 GLLTGDS-AI----NREAQILIMTTEILRNMLYQ 260 (1174)
Q Consensus 232 ~lltGd~-~~----~~~~~IlV~Tpe~L~~~L~~ 260 (1174)
+. ..+. .. ..-..+-|+|...+...+.+
T Consensus 86 ~~-~~~~~~~~~~~~~~~~~~i~T~hsf~~~~l~ 118 (1232)
T 3u4q_A 86 VQ-RPGSLHIRRQLSLLNRASISTLHSFCLQVLK 118 (1232)
T ss_dssp HH-STTCHHHHHHHHHTTTSEEECHHHHHHHHHH
T ss_pred hc-CcchHHHHHHHhccCCCeEEeHHHHHHHHHH
Confidence 00 0000 00 00134678999877765554
No 123
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.98 E-value=0.026 Score=59.66 Aligned_cols=40 Identities=23% Similarity=0.143 Sum_probs=35.1
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Ptr 212 (1174)
.|+-.++.|+.|+|||+.++-.+.+....|.+++++.|.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC
Confidence 3566788999999999999888888888999999999976
No 124
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.88 E-value=0.04 Score=61.63 Aligned_cols=36 Identities=11% Similarity=0.034 Sum_probs=27.9
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEc
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTT 209 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~ 209 (1174)
++++++.||||+|||..+........ ..+.+++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 57999999999999988876655555 6677776653
No 125
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.87 E-value=0.072 Score=56.48 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=25.7
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
.+..+++.||+|+|||..+...+-.....+..++++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3578999999999999887655444434455555543
No 126
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.83 E-value=0.079 Score=62.37 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=25.0
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhc--CCeEEEEcc
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVAN--QRRIFYTTP 210 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~--g~rvlvl~P 210 (1174)
..+++.||+|+|||..+....-..... +.+++++..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 589999999999998876544333222 556666654
No 127
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.73 E-value=0.045 Score=61.97 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHH----cCC---cEEEEccCCcchHHHHHHHHH
Q 001047 160 IDKFQRSSIEAFL----RGS---SVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 160 ~~~~Q~~ai~~ll----~g~---~vlv~apTGsGKTlv~~~~il 196 (1174)
+.|+|.+++..+. +|+ .+++.||.|+|||..+...+-
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHH
Confidence 3567777765543 443 489999999999988765543
No 128
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.57 E-value=0.21 Score=54.44 Aligned_cols=21 Identities=43% Similarity=0.574 Sum_probs=17.5
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
..+++.||+|+|||.++....
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 479999999999998876443
No 129
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.52 E-value=0.24 Score=57.70 Aligned_cols=121 Identities=11% Similarity=0.091 Sum_probs=70.7
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTE 252 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe 252 (1174)
..+++++++|+|||+.+.-.+.....+|.+++++. |.|+-+.++...+....+ +-++..... ..|.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~g---vpv~~~~~~---------~dp~ 168 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYH---IEVFGNPQE---------KDAI 168 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGT---CEEECCTTC---------CCHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcC---CcEEecCCC---------CCHH
Confidence 46788999999999987766655556778887776 667666666666666544 222222111 1232
Q ss_pred -HHHHHHhcccccccCCCCCCceeEEEEccccccccC-CcHHHHHHHHHHCCCCccEEEEccccC
Q 001047 253 -ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI-SRGTVWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 253 -~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~-~~g~~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
.+...+... .-.++++||||.+=++... ..-..+..+.....++.-++.++||.+
T Consensus 169 ~i~~~al~~a--------~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g 225 (443)
T 3dm5_A 169 KLAKEGVDYF--------KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG 225 (443)
T ss_dssp HHHHHHHHHH--------HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred HHHHHHHHHH--------HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc
Confidence 233333221 0125899999999654321 112223333444455666788888875
No 130
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.45 E-value=0.44 Score=47.99 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=17.5
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
..+++.||+|+|||..+...+
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHH
Confidence 679999999999998875443
No 131
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.42 E-value=0.12 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=18.4
Q ss_pred CCcEEEEccCCcchHHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il 196 (1174)
..++++.||+|+|||..+...+-
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 36899999999999988765443
No 132
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.22 E-value=0.022 Score=55.95 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=18.7
Q ss_pred HcCCcEEEEccCCcchHHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~ 193 (1174)
..+.++++.||+|+|||.++-.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~ 43 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARY 43 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHH
Confidence 3557999999999999988764
No 133
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.15 E-value=0.04 Score=53.96 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=18.6
Q ss_pred HHcCCcEEEEccCCcchHHHHHH
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~ 193 (1174)
...+.++++.+|+|+|||.++-.
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGG
T ss_pred hCCCCcEEEECCCCccHHHHHHH
Confidence 34567999999999999987643
No 134
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.02 E-value=0.049 Score=56.72 Aligned_cols=35 Identities=23% Similarity=0.143 Sum_probs=23.0
Q ss_pred cEEEEccCCcchHHHHHHHHHHHH-----hcCCeEEEEcc
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATV-----ANQRRIFYTTP 210 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l-----~~g~rvlvl~P 210 (1174)
-.++.|+.|||||+.+...+.... ..|.+.+|++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~ 46 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTN 46 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEEC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEec
Confidence 468999999999998765544432 33425555554
No 135
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.99 E-value=0.45 Score=49.19 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=24.6
Q ss_pred CceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEcc
Q 001047 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 312 (1174)
Q Consensus 272 ~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSA 312 (1174)
..-.+|||||+|.+... ....+..++...+.+..+|+.|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45679999999998642 22334444555555666665543
No 136
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.96 E-value=0.087 Score=60.47 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=29.7
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhc--CCeEEEEc-ccHHHHHHHHHHHHHHhC
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVAN--QRRIFYTT-PLKALSNQKFREFRETFG 227 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~--g~rvlvl~-PtraLa~Q~~~~l~~~~g 227 (1174)
.+++.||+|+|||..+-.. ...+.. +..++++. ....-..+.+..+...++
T Consensus 46 ~~li~G~~G~GKTtl~~~l-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~ 99 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKL-WELYKDKTTARFVYINGFIYRNFTAIIGEIARSLN 99 (389)
T ss_dssp EEEEECCTTSSHHHHHHHH-HHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHH-HHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhC
Confidence 7999999999999887543 344433 34566664 221112344444444443
No 137
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.85 E-value=0.1 Score=57.91 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=17.5
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
.++++.||+|+|||.++...+
T Consensus 68 ~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 479999999999998876543
No 138
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.43 E-value=0.11 Score=53.67 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=34.6
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Ptr 212 (1174)
..++|..++|.|||.+++-.++.++..|.+|+|+.-.+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 58999999999999999999999999999999996655
No 139
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.43 E-value=0.45 Score=52.63 Aligned_cols=125 Identities=15% Similarity=0.202 Sum_probs=68.6
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEE
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIM 249 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~ 249 (1174)
.++.+++.+|+|+|||+.....+.... ..|.+++++. |.+..+.+....+.+.+|- .+ .. ..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl-~~--~~------------~~ 168 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQA-PL--EV------------CY 168 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTC-CC--CB------------CS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCC-Ce--Ee------------cC
Confidence 456888999999999987765544433 3576776653 3444444444444443331 10 00 01
Q ss_pred cHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCC---CCccEEEEccccCChHHHHHHHh
Q 001047 250 TTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP---KEVQIICLSATVANADELAGWIG 325 (1174)
Q Consensus 250 Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~---~~~qiI~LSATl~n~~~~~~~l~ 325 (1174)
.+..+...+.. +.+.++||+|-+-... .....+.++...+. +...++.++||. +..++..+..
T Consensus 169 ~~~~l~~al~~----------~~~~dlvIiDT~G~~~--~~~~~~~el~~~l~~~~~~~~~lVl~at~-~~~~~~~~~~ 234 (296)
T 2px0_A 169 TKEEFQQAKEL----------FSEYDHVFVDTAGRNF--KDPQYIDELKETIPFESSIQSFLVLSATA-KYEDMKHIVK 234 (296)
T ss_dssp SHHHHHHHHHH----------GGGSSEEEEECCCCCT--TSHHHHHHHHHHSCCCTTEEEEEEEETTB-CHHHHHHHTT
T ss_pred CHHHHHHHHHH----------hcCCCEEEEeCCCCCh--hhHHHHHHHHHHHhhcCCCeEEEEEECCC-CHHHHHHHHH
Confidence 34555544432 2578999999665542 22234444444443 233467777775 4555665544
No 140
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.40 E-value=0.21 Score=54.23 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=18.4
Q ss_pred cCCcEEEEccCCcchHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~ 194 (1174)
.+..+++.||+|+|||.++-..
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i 49 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRL 49 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHHHH
Confidence 4579999999999999877543
No 141
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.98 E-value=0.12 Score=57.86 Aligned_cols=39 Identities=18% Similarity=0.061 Sum_probs=22.9
Q ss_pred CCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEE
Q 001047 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIIC 309 (1174)
Q Consensus 271 l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~ 309 (1174)
....++|||||+|.+........+..++...+.+.++|+
T Consensus 103 ~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~ 141 (324)
T 3u61_B 103 DGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIII 141 (324)
T ss_dssp SSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEE
T ss_pred CCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEE
Confidence 347889999999998621222333333444344555555
No 142
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.92 E-value=0.53 Score=49.30 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=16.5
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++.||+|+|||..+...+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999998775443
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.92 E-value=0.23 Score=56.67 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=24.1
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEc
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTT 209 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~ 209 (1174)
+..+++.||+|+|||..+...+-..... +..++++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 4689999999999998876543322222 45566654
No 144
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.62 E-value=0.2 Score=59.23 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=29.7
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTP 210 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~P 210 (1174)
.|.-++|.|++|+|||..+...+..... .|.+|+|+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 4567899999999999888777666654 4668888764
No 145
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.62 E-value=0.17 Score=59.67 Aligned_cols=50 Identities=18% Similarity=0.042 Sum_probs=34.3
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKFREFR 223 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~~~l~ 223 (1174)
.|.-++|.|++|+|||..+...+..... .|.+++|++.-- -..|+..++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~-~~~~l~~R~~ 249 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM-PAAQLTLRMM 249 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS-CHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHH
Confidence 4467899999999999888777766665 467888876532 1234444443
No 146
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.60 E-value=0.21 Score=52.59 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=27.9
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
.|..+++.||+|+|||+.+...+......+.+++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4578899999999999877665545555566777765
No 147
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.41 E-value=0.16 Score=53.05 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=27.1
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
.|.-+++.+|+|+|||+.+...+. ..+.+++|+.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEEC
Confidence 356789999999999988766555 45778888764
No 148
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=91.95 E-value=0.16 Score=63.73 Aligned_cols=165 Identities=13% Similarity=0.050 Sum_probs=100.1
Q ss_pred HhhHHHHHhhcCCccCCC--CccChhhHHHHhhcCCchHHHHHHHHhcccC--CCCHHhHHHHHhhhc-cccccccccCC
Q 001047 984 FLRISNVIHETRALDINT--QVIFPLGETAAAIRGENELWLAMVLRNKILL--DLKPAQLAAVCASLV-SEGIKVRLWKN 1058 (1174)
Q Consensus 984 f~~~~~VL~~lgyl~~~~--~~vt~~Gr~a~~i~~~~eLllte~l~~g~~~--~L~p~~laA~~s~~v-~e~~~~r~~~~ 1058 (1174)
+.+.++.|.++|+|+.++ ..+|..|+.++..+-.-. ++.++..+.=. ..+..++-.++|+.- ++.+.+|+
T Consensus 473 ~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~--- 547 (715)
T 2va8_A 473 FDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPF--TADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGR--- 547 (715)
T ss_dssp HHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCCHH--HHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCH---
T ss_pred HHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcCCHh--HHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccCh---
Confidence 667889999999998653 389999999999997433 34444333322 245556666555432 33322222
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH---cCC-CCCCC--------CChhHHHHHHHHhCCCCHHHHHHhcCCCh
Q 001047 1059 NSSIYEPSTTVINVINVLDEHRSSFLELQEK---HGV-EIPCC--------LDSQFSGMVEAWASGLTWREMMMDCALDD 1126 (1174)
Q Consensus 1059 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~---~~~-~~~~~--------~~~~l~~~v~~Wa~G~~~~~i~~~t~l~e 1126 (1174)
.+. . . +.++..+ .++ +.|.. ...-..-++.+|.++.++.+|++.-.+..
T Consensus 548 --------~e~-~---~-------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~ 608 (715)
T 2va8_A 548 --------NEE-E---E-------LIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGS 608 (715)
T ss_dssp --------HHH-H---H-------HHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCH
T ss_pred --------HHH-H---H-------HHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCCh
Confidence 111 1 1 1111111 111 11111 11225566799999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHHHhccCCCCcccC
Q 001047 1127 GDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDASNVMDRPPISEL 1172 (1174)
Q Consensus 1127 Gd~vR~~rrl~dll~Qi~~~~~~--~~~l~~~~~~a~~~i~R~~v~~~ 1172 (1174)
||+..+.....-+++.+...+.. ...++..+......|..++..|+
T Consensus 609 gdl~~l~~~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e~ 656 (715)
T 2va8_A 609 GDLRNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEEL 656 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCChhh
Confidence 99988777666666555433322 45666777777777777777665
No 149
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.93 E-value=0.18 Score=56.54 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=17.7
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
+.+++.||+|+|||+++-..+
T Consensus 52 ~~vLl~GppGtGKT~la~aia 72 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVA 72 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 579999999999998876443
No 150
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.78 E-value=0.33 Score=54.29 Aligned_cols=51 Identities=20% Similarity=0.145 Sum_probs=36.7
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
.|.-++|.|++|+|||..+...+.....++.+++|++-- .-..|+..++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHHH
Confidence 457899999999999988887777777777889888743 223344444443
No 151
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.65 E-value=0.4 Score=55.38 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=16.9
Q ss_pred CcEEE--EccCCcchHHHHHHHH
Q 001047 175 SSVVV--SAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv--~apTGsGKTlv~~~~i 195 (1174)
..++| .||.|+|||..+...+
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~ 73 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTV 73 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHH
Confidence 46888 8999999998876544
No 152
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.58 E-value=0.23 Score=57.26 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=18.0
Q ss_pred CCcEEEEccCCcchHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~ 194 (1174)
.+.+++.||+|+|||.++...
T Consensus 148 ~~~vLL~GppGtGKT~la~ai 168 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAV 168 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 478999999999999887654
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.49 E-value=0.62 Score=51.74 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=23.8
Q ss_pred CceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 272 ~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
.+..+||+||+|.+.... ...+..++...+.+..+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEEEe
Confidence 357899999999986422 223334445555556665543
No 154
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.45 E-value=0.24 Score=54.23 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=18.1
Q ss_pred cCCcEEEEccCCcchHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~ 194 (1174)
.++.+++.||+|+|||.++-..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~l 71 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAV 71 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHH
Confidence 4468999999999999877544
No 155
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.33 E-value=0.59 Score=52.50 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=17.2
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
.++++.||+|+|||+++...
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 58999999999999887554
No 156
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.02 E-value=0.59 Score=51.92 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=16.0
Q ss_pred cEEEEccCCcchHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~ 194 (1174)
.+++.||.|+|||..+...
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~l 38 (305)
T 2gno_A 20 SILINGEDLSYPREVSLEL 38 (305)
T ss_dssp EEEEECSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999876553
No 157
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.94 E-value=0.75 Score=55.15 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=22.9
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
+.++++||+|+|||.++...+-.. +..++.+.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l---~~~~i~in 109 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQN 109 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEe
Confidence 689999999999998876543322 55555554
No 158
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.85 E-value=0.33 Score=56.97 Aligned_cols=38 Identities=26% Similarity=0.217 Sum_probs=32.1
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
.|.-++|.|++|+|||..++..+.....+|.+++|++-
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 45678999999999999988888877777889999864
No 159
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.80 E-value=0.74 Score=51.82 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=24.1
Q ss_pred CceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 272 ~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
....+||+||+|.+... ....+..++...+....+|+.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 35689999999998642 2233444555555555565543
No 160
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.64 E-value=0.5 Score=52.53 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=32.1
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHHhC
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT--PLKALSNQKFREFRETFG 227 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~--PtraLa~Q~~~~l~~~~g 227 (1174)
++.+++.+|+|+|||+.....+......+++++++. +.+.-+.++...+.+..+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~g 159 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVG 159 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcC
Confidence 346789999999999876555443334566666653 334433333344444444
No 161
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.59 E-value=0.62 Score=49.32 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=27.9
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHh------cCCeEEEEccc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVA------NQRRIFYTTPL 211 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~------~g~rvlvl~Pt 211 (1174)
.|.-+++.+|+|+|||..+...+...+. .+..++|+.-.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 4578899999999999887766554333 25677777543
No 162
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.56 E-value=0.76 Score=50.77 Aligned_cols=122 Identities=19% Similarity=0.168 Sum_probs=60.4
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMT 250 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~T 250 (1174)
.++.+.+.+++|+|||+.+...+......+++++++- +.+..+..+...+.+..+ +.++.++.. ..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~---l~~~~~~~~---------~~ 164 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVG---VPVLEVMDG---------ES 164 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHT---CCEEECCTT---------CC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCC---eEEEEcCCC---------CC
Confidence 4566778899999999876555444334567776653 344444333333444333 222322211 13
Q ss_pred HHHH-HHHHhcccccccCCCCCCceeEEEEccccccc-cCCcHHHHHHHHHHCCCCccEEEEcccc
Q 001047 251 TEIL-RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS-DISRGTVWEEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 251 pe~L-~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~-d~~~g~~~e~ii~~l~~~~qiI~LSATl 314 (1174)
|..+ +..+... ...++++||||+.-.+. |...-..+..+...+.+..-++.+.|+.
T Consensus 165 p~~l~~~~l~~~--------~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~ 222 (295)
T 1ls1_A 165 PESIRRRVEEKA--------RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT 222 (295)
T ss_dssp HHHHHHHHHHHH--------HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHHHHHHH--------HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC
Confidence 3333 2233210 01468999999995443 2111122222333333333355566764
No 163
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.25 E-value=0.75 Score=51.93 Aligned_cols=43 Identities=9% Similarity=0.245 Sum_probs=26.9
Q ss_pred CCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEcccc
Q 001047 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 271 l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl 314 (1174)
..+..+||+||+|.+. ......+..++...+.+..+|+.|-.+
T Consensus 132 ~~~~~vlilDE~~~L~-~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANSLT-KDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTSSC-HHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccccC-HHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 3467899999999964 333344455566666666666666544
No 164
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=90.20 E-value=0.18 Score=56.15 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCcchHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~ 194 (1174)
.+..+++.||||+|||+++-..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i 45 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARAL 45 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHHH
Confidence 4578999999999999887543
No 165
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.19 E-value=0.41 Score=54.47 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=18.1
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+.+++.||+|+|||+++-..+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala 105 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVA 105 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHH
Confidence 3679999999999998876444
No 166
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.13 E-value=0.38 Score=53.97 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=17.2
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
+.+++.||+|+|||+.+-..
T Consensus 46 ~~iLL~GppGtGKT~la~al 65 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAV 65 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 68999999999999877543
No 167
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.06 E-value=0.69 Score=51.46 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=17.2
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
..+++.||+|+|||.++...
T Consensus 39 ~~vll~G~~GtGKT~la~~i 58 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVI 58 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 68999999999999877544
No 168
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.92 E-value=1 Score=49.18 Aligned_cols=40 Identities=20% Similarity=0.386 Sum_probs=29.0
Q ss_pred HHcCCcEEEEccCCcchHHHHHHHHHHHHhc-----------CCeEEEEccc
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEAAAVATVAN-----------QRRIFYTTPL 211 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~~il~~l~~-----------g~rvlvl~Pt 211 (1174)
+..|.-++|.||+|+|||+.+...+.. +.. +.+++|+.-.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~-~~~g~~~~g~~~~~~~~v~~~~~e 77 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ-IAGGPDLLEVGELPTGPVIYLPAE 77 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH-HHTCCCTTCCCCCCCCCEEEEESS
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH-HhcCCCcCCCccCCCccEEEEECC
Confidence 457788999999999999887766553 334 3567777543
No 169
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.75 E-value=0.63 Score=52.46 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=24.3
Q ss_pred CceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 272 ~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
....++|+||+|.+... ....+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 35789999999998642 2233444455555555555543
No 170
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.65 E-value=0.47 Score=52.22 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=17.8
Q ss_pred CCcEEEEccCCcchHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~ 194 (1174)
++.+++.||+|+|||+.+-..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~l 74 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAV 74 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHH
Confidence 478999999999999887543
No 171
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.58 E-value=0.77 Score=49.27 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=17.9
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+.+++.||+|+|||..+....
T Consensus 39 ~~~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4679999999999998776443
No 172
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.44 E-value=1.2 Score=50.57 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=15.9
Q ss_pred cEEEEccCCcchHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~ 194 (1174)
.+++.||+|+|||..+...
T Consensus 40 ~~ll~G~~G~GKT~la~~l 58 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLL 58 (373)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999887544
No 173
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.04 E-value=0.35 Score=54.98 Aligned_cols=47 Identities=26% Similarity=0.306 Sum_probs=36.6
Q ss_pred HHHHHHc------CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHH
Q 001047 167 SIEAFLR------GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKA 213 (1174)
Q Consensus 167 ai~~ll~------g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Ptra 213 (1174)
.+..++. |+.++|.+++|+|||..+...+......+.+++|+..-..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s 102 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 102 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4555553 4678999999999999998888777777888999876433
No 174
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=89.01 E-value=1 Score=53.29 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=46.8
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeC
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltG 236 (1174)
.+....+.+-||||||++....+. ..++.+|||+|....|.|++.+++.++++. |..+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~---~~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp~ 72 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAE---RHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLAD 72 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHH---HSSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECCC
T ss_pred CCCeEEEeCCCchHHHHHHHHHHH---HhCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEeC
Confidence 456789999999999976544332 236679999999999999999999987765 665544
No 175
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.83 E-value=1 Score=49.78 Aligned_cols=20 Identities=25% Similarity=0.301 Sum_probs=16.7
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
++++.||+|+|||..+...+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~ 63 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLA 63 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 59999999999998776544
No 176
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.45 E-value=0.68 Score=55.03 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=17.7
Q ss_pred CCcEEEEccCCcchHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~ 194 (1174)
...+++.||+|+|||+++-..
T Consensus 238 ~~~vLL~GppGtGKT~lArai 258 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAV 258 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHH
Confidence 367999999999999987544
No 177
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=88.30 E-value=0.28 Score=55.94 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=18.2
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+.+++.||+|+|||+++-..+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4689999999999998876543
No 178
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=88.01 E-value=2.1 Score=53.44 Aligned_cols=139 Identities=13% Similarity=0.087 Sum_probs=83.2
Q ss_pred cHHHHhhHHHHHhhcCCccCC-CCccChhhHHHHhhcCCchHHHHHHHHhcccCC-CCHHhHHHHHhhh-cccccccccc
Q 001047 980 GWKEFLRISNVIHETRALDIN-TQVIFPLGETAAAIRGENELWLAMVLRNKILLD-LKPAQLAAVCASL-VSEGIKVRLW 1056 (1174)
Q Consensus 980 ~~~~f~~~~~VL~~lgyl~~~-~~~vt~~Gr~a~~i~~~~eLllte~l~~g~~~~-L~p~~laA~~s~~-v~e~~~~r~~ 1056 (1174)
....+.+.++.|.++|+|+.+ ...+|..|+.++..+-. --++.++..+.-.. .+..++-.++|+. .++.+.+|++
T Consensus 451 ~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~ 528 (702)
T 2p6r_A 451 LSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYID--PLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKT 528 (702)
T ss_dssp CHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCC--HHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTT
T ss_pred HHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhCC--HHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCc
Confidence 455677889999999999865 13899999999999863 34455665554332 4555555555432 2233222221
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCC--C-------CChhHHHHHHHHhCCCCHHHHHHhcCCCh
Q 001047 1057 KNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHG-VEIPC--C-------LDSQFSGMVEAWASGLTWREMMMDCALDD 1126 (1174)
Q Consensus 1057 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~-~~~~~--~-------~~~~l~~~v~~Wa~G~~~~~i~~~t~l~e 1126 (1174)
+ ..+.+.+ .+. .++ +++|. + ......-++.+|.+|.++.+|++.-.+..
T Consensus 529 e---------~~~~~~~----------~~~--~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~ 587 (702)
T 2p6r_A 529 D---------SWVEEEA----------FRL--RKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAP 587 (702)
T ss_dssp T---------HHHHHHH----------HHH--GGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCH
T ss_pred h---------HHHHHHH----------Hhc--cccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcH
Confidence 0 1122111 110 122 23331 1 11235667799999999999999999999
Q ss_pred hHHHHHHHHHHHHHh
Q 001047 1127 GDLARLLRRTIDLLA 1141 (1174)
Q Consensus 1127 Gd~vR~~rrl~dll~ 1141 (1174)
||+...+....-+++
T Consensus 588 gdl~~i~~~a~~l~~ 602 (702)
T 2p6r_A 588 GDLRRIVETAEWLSN 602 (702)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 998765554443333
No 179
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=87.97 E-value=0.5 Score=53.92 Aligned_cols=96 Identities=24% Similarity=0.291 Sum_probs=58.4
Q ss_pred HHHHHHc------CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 001047 167 SIEAFLR------GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI 240 (1174)
Q Consensus 167 ai~~ll~------g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~ 240 (1174)
.+..++. |.-++|.+|+|+|||..++..+......+.+++|+..-..+. +.+ .+.+|...
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~-~~~---a~~~g~d~---------- 126 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD-PVY---ARALGVNT---------- 126 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-HHH---HHHTTCCG----------
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh-HHH---HHHcCCCH----------
Confidence 4555555 467899999999999988887777777788898887554332 221 22233210
Q ss_pred CCCCcEEE---EcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 241 NREAQILI---MTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 241 ~~~~~IlV---~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
..++| .|.+.+...+.... .-..+++||||.+..+.
T Consensus 127 ---~~l~i~~~~~~e~~l~~l~~l~-------~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 127 ---DELLVSQPDNGEQALEIMELLV-------RSGAIDVVVVDSVAALT 165 (366)
T ss_dssp ---GGCEEECCSSHHHHHHHHHHHH-------TTTCCSEEEEECTTTCC
T ss_pred ---HHceeecCCcHHHHHHHHHHHH-------hcCCCCEEEEeChHHhc
Confidence 01111 14455444443210 01368899999999875
No 180
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=87.92 E-value=1.3 Score=50.17 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=17.6
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
+.+++.||+|+|||.++...+
T Consensus 71 ~~vLl~GppGtGKT~la~~la 91 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMA 91 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999998876543
No 181
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=87.74 E-value=1.1 Score=50.11 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=25.4
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
.++.+.+.+++|+|||+.....+......+++++++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 345678899999999987655544434467777766
No 182
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=87.35 E-value=1.2 Score=52.35 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=23.0
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
.+.+++.||+|+|||+.+-..+- .+ .+...+.+..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~-~~-~~~~~~~v~~ 201 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVAT-EA-NNSTFFSISS 201 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH-HC-CSSEEEEECC
T ss_pred CceEEEECCCCCCHHHHHHHHHH-Hc-CCCCEEEEeH
Confidence 36899999999999988754332 22 2444444443
No 183
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.27 E-value=4.9 Score=44.86 Aligned_cols=125 Identities=13% Similarity=0.110 Sum_probs=66.1
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE-ccc-HHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT-TPL-KALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMT 250 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl-~Pt-raLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~T 250 (1174)
.|.-+.+.+|+|+|||+..-..+-..-..++++++. .++ +.-+.++...+.+..| +.++.......+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~g---v~~v~q~~~~~p-------- 196 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIG---VKVIKHSYGADP-------- 196 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTT---CEEECCCTTCCH--------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcC---ceEEeccccCCH--------
Confidence 356788999999999987554433333345555544 443 3334444555555554 333333222111
Q ss_pred HHHHHHHHhcccccccCCCCCCceeEEEEcccccccc-CCcHHHHHHHHHHCCCCccEEEEccccCC
Q 001047 251 TEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD-ISRGTVWEEIIIYCPKEVQIICLSATVAN 316 (1174)
Q Consensus 251 pe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d-~~~g~~~e~ii~~l~~~~qiI~LSATl~n 316 (1174)
.......+... ...+.+++++|.+-.... ...-..+..+...+.++..++.+.||...
T Consensus 197 ~~~v~e~l~~~--------~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~ 255 (328)
T 3e70_C 197 AAVAYDAIQHA--------KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN 255 (328)
T ss_dssp HHHHHHHHHHH--------HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT
T ss_pred HHHHHHHHHHH--------HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH
Confidence 01111111110 012467889999876542 23333444454555567778899998763
No 184
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=87.08 E-value=0.54 Score=55.25 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=16.9
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
.++++.||+|+|||.++-..
T Consensus 51 ~~vLL~GppGtGKTtlAr~i 70 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVI 70 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHH
Confidence 36999999999999887643
No 185
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.08 E-value=0.7 Score=63.14 Aligned_cols=47 Identities=26% Similarity=0.319 Sum_probs=39.4
Q ss_pred HHHHHc------CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHH
Q 001047 168 IEAFLR------GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214 (1174)
Q Consensus 168 i~~ll~------g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraL 214 (1174)
+..++. ++++++++|+|+|||..+...+.+...+|.+++|+..--++
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccccc
Confidence 666665 68999999999999999988888888889999999876443
No 186
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=86.82 E-value=8.1 Score=42.90 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHH
Q 001047 161 DKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 161 ~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
+.-+.+.+.. +....++|.||.|+|||......+
T Consensus 18 R~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~ 51 (357)
T 2fna_A 18 REKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGI 51 (357)
T ss_dssp CHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHH
T ss_pred hHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHH
Confidence 4445555555 544689999999999998765443
No 187
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=86.74 E-value=0.97 Score=49.96 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=18.7
Q ss_pred cCCcEEEEccCCcchHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.++.+++.||+|+|||+.+-..+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala 70 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIA 70 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHH
Confidence 45789999999999998876433
No 188
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.50 E-value=0.6 Score=49.54 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=36.3
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFR 223 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~ 223 (1174)
.|..+++.||+|+|||..+...+......+.+++|+.-.. -..+..+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHH
Confidence 5578899999999999988777776667788888886432 2344444443
No 189
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=85.32 E-value=0.77 Score=53.60 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=26.9
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
..+++++++|+|||+.+...+......|.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 36889999999999887666555555677887775
No 190
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=85.28 E-value=3.6 Score=47.64 Aligned_cols=120 Identities=19% Similarity=0.187 Sum_probs=63.3
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTT 251 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tp 251 (1174)
++.+++++++|+|||+.....+......+++++++. +.+..+..+...+....+ +-++..... ..|
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~g---v~v~~~~~~---------~~p 165 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVG---VPVLEVMDG---------ESP 165 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHT---CCEEECCTT---------CCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCC---ccEEecCCC---------CCH
Confidence 456778899999999877665544445677777664 455555544444444433 222332221 133
Q ss_pred HHH-HHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHH---HHHHCCCCccEEEEccccC
Q 001047 252 EIL-RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEE---IIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 252 e~L-~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~---ii~~l~~~~qiI~LSATl~ 315 (1174)
..+ ...+... ...++++||||=+-.+.. -.....+ +...+.++.-++.+.|+-.
T Consensus 166 ~~i~~~~l~~~--------~~~~~DvVIIDTaG~l~~--d~~l~~el~~i~~~~~pd~vlLVvDa~tg 223 (425)
T 2ffh_A 166 ESIRRRVEEKA--------RLEARDLILVDTAGRLQI--DEPLMGELARLKEVLGPDEVLLVLDAMTG 223 (425)
T ss_dssp HHHHHHHHHHH--------HHTTCSEEEEECCCCSSC--CHHHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred HHHHHHHHHHH--------HHCCCCEEEEcCCCcccc--cHHHHHHHHHhhhccCCceEEEEEeccch
Confidence 332 3333220 013689999997755432 1222222 2333334444666777643
No 191
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.14 E-value=0.95 Score=57.87 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=21.9
Q ss_pred HHHHHHcC--CcEEEEccCCcchHHHHHHHHHH
Q 001047 167 SIEAFLRG--SSVVVSAPTSSGKTLIAEAAAVA 197 (1174)
Q Consensus 167 ai~~ll~g--~~vlv~apTGsGKTlv~~~~il~ 197 (1174)
.+..+..+ .+++++||+|+|||.++...+-.
T Consensus 182 l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 182 VIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp HHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 34444433 58999999999999887655433
No 192
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=84.89 E-value=0.82 Score=54.63 Aligned_cols=38 Identities=8% Similarity=0.077 Sum_probs=31.1
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhc-CCeEEEEcc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVAN-QRRIFYTTP 210 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~-g~rvlvl~P 210 (1174)
.|.-++|.|++|+|||..++..+.....+ |.+++|++-
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 45678999999999999888877777665 778888864
No 193
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=84.43 E-value=1.4 Score=48.53 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=16.7
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
++++.||+|+|||..+...+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~ 59 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALA 59 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHH
Confidence 69999999999998775443
No 194
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.42 E-value=1.6 Score=54.92 Aligned_cols=20 Identities=45% Similarity=0.536 Sum_probs=16.9
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
++++.||||+|||.++-...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala 542 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALA 542 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999998876543
No 195
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=83.97 E-value=0.85 Score=52.55 Aligned_cols=51 Identities=18% Similarity=0.342 Sum_probs=39.1
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCC
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGD 228 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~ 228 (1174)
.+.+++|.||||||||+..-..+......+.+++++=|..+ +..+.+.+|.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~-----~~~~~~~~gg 84 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE-----YKEMCRKLGG 84 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC-----SHHHHHHTTC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC-----HHHHHHHcCC
Confidence 56799999999999998877766666677888999888765 3345555665
No 196
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=83.77 E-value=1 Score=54.22 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCcchHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~ 194 (1174)
.+..+++.+|+|+|||+.+-..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~i 128 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSI 128 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3678999999999999887543
No 197
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=83.04 E-value=3.3 Score=45.62 Aligned_cols=120 Identities=9% Similarity=0.083 Sum_probs=62.3
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTT 251 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tp 251 (1174)
++.+++++++|+|||+.+...+......+++++++. |.++.+..+...+.+..+ +-++.+... ..|
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~---v~v~~~~~~---------~~p 165 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIG---VPVYGEPGE---------KDV 165 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHT---CCEECCTTC---------CCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCC---eEEEecCCC---------CCH
Confidence 345778899999999877665544445677777663 344555444444444433 223333211 123
Q ss_pred HHH-HHHHhcccccccCCCCCCceeEEEEccccccccCCcH-HHH---HHHHHHCCCCccEEEEcccc
Q 001047 252 EIL-RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRG-TVW---EEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 252 e~L-~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g-~~~---e~ii~~l~~~~qiI~LSATl 314 (1174)
..+ ...+... .-.++++||||=+-.+.- ... ..+ ..+......+.-++.+.|+.
T Consensus 166 ~~~~~~~l~~~--------~~~~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 166 VGIAKRGVEKF--------LSEKMEIIIVDTAGRHGY-GEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp HHHHHHHHHHH--------HHTTCSEEEEECCCSCCT-TCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHHHHHH--------HhCCCCEEEEeCCCCccc-ccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 333 2333220 013689999999766530 011 122 22223334455566677764
No 198
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=82.47 E-value=3.1 Score=51.97 Aligned_cols=172 Identities=14% Similarity=0.145 Sum_probs=91.3
Q ss_pred HHHHhhHHHHHhhcCCcc-CCC--CccChhhHHHHhhcCCchHHHHHHHHhcccC---CCCHHhHHHHHhhhc-cccccc
Q 001047 981 WKEFLRISNVIHETRALD-INT--QVIFPLGETAAAIRGENELWLAMVLRNKILL---DLKPAQLAAVCASLV-SEGIKV 1053 (1174)
Q Consensus 981 ~~~f~~~~~VL~~lgyl~-~~~--~~vt~~Gr~a~~i~~~~eLllte~l~~g~~~---~L~p~~laA~~s~~v-~e~~~~ 1053 (1174)
...+...++.|.++|+|+ .++ ..+|..|+.++..+-+-. ++.++....=. ..+..++-.++|..- ++...+
T Consensus 453 ~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~ 530 (720)
T 2zj8_A 453 EEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPY--TAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNY 530 (720)
T ss_dssp HHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHH--HHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCC
T ss_pred HHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHH--HHHHHHHHHHhhccCCCHHHHHHHhccCcccccccc
Confidence 345668888999999998 532 379999999999997433 33333332211 144456655555422 233222
Q ss_pred cccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--C----------hhHHHHHHHHhCCCCHHHHHHh
Q 001047 1054 RLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCL--D----------SQFSGMVEAWASGLTWREMMMD 1121 (1174)
Q Consensus 1054 r~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~--~----------~~l~~~v~~Wa~G~~~~~i~~~ 1121 (1174)
|+ .+.. .+.++ +.+...+.-.+.|... . .-..-++++|.++.++.+|.+.
T Consensus 531 r~-----------~e~~----~l~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~ 592 (720)
T 2zj8_A 531 SK-----------REFE----RLEEE---YYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEK 592 (720)
T ss_dssp CH-----------HHHH----HHHHH---HHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CH-----------HHHH----HHHHH---HHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 22 1111 11111 1111111112233221 1 1245567999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHHHhccCCCCcccC
Q 001047 1122 CALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDASNVMDRPPISEL 1172 (1174)
Q Consensus 1122 t~l~eGd~vR~~rrl~dll~Qi~~~~~~--~~~l~~~~~~a~~~i~R~~v~~~ 1172 (1174)
-.+..||+...+....-+++-+...+.. ...+...+..-...|.-+...|+
T Consensus 593 ~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g~~~~~~~l~~l~~rl~~gv~~e~ 645 (720)
T 2zj8_A 593 YSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREEL 645 (720)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHTCCGGG
T ss_pred hCCChHhHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCccc
Confidence 9999999887666555444443322211 12233444444444444444443
No 199
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=81.83 E-value=1.3 Score=51.78 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=35.4
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~ 216 (1174)
...+++|.|+||||||......+.+.+..|..++|+=|.-++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 34799999999999999865455566677889999999887754
No 200
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=81.82 E-value=4.7 Score=46.91 Aligned_cols=91 Identities=15% Similarity=0.232 Sum_probs=52.9
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhc-CCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVAN-QRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTT 251 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~-g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tp 251 (1174)
+.+++++++|+|||++..-.+...... |.+++++. |.+..+.++...+....+ +-++.+... .+|
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~---l~v~~~~~~---------~dp 168 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG---VDFFPSDVG---------QKP 168 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHT---CEECCCCSS---------SCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCC---eeEEeCCCC---------CCH
Confidence 367788999999998887666555556 88888764 555555544444444333 333333221 134
Q ss_pred HHH-HHHHhcccccccCCCCCCceeEEEEcccccc
Q 001047 252 EIL-RNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285 (1174)
Q Consensus 252 e~L-~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l 285 (1174)
..+ ...+... ...++++||||=+=.+
T Consensus 169 ~~i~~~~l~~~--------~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 169 VDIVNAALKEA--------KLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHHHHHHHHH--------HHTTCSEEEEECCCCC
T ss_pred HHHHHHHHHHH--------HhCCCCEEEEECCCcc
Confidence 433 3333210 0136899999987554
No 201
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=80.75 E-value=5.1 Score=47.15 Aligned_cols=34 Identities=12% Similarity=0.109 Sum_probs=23.3
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
..+.+.|++|||||+..-..+-..-..++++++.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 4578999999999987655433222356677765
No 202
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=80.31 E-value=3.9 Score=45.49 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=23.9
Q ss_pred CHHHHHHHHH-HHcCCcEEEEccCCcchHHHHHHHH
Q 001047 161 DKFQRSSIEA-FLRGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 161 ~~~Q~~ai~~-ll~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
+.-+.+.+.. +..++.++|.||.|+|||......+
T Consensus 17 R~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 17 REEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp CHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHH
Confidence 4444444444 3346889999999999998765443
No 203
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=79.54 E-value=4.9 Score=44.52 Aligned_cols=106 Identities=8% Similarity=-0.064 Sum_probs=60.4
Q ss_pred CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHH
Q 001047 439 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 518 (1174)
Q Consensus 439 ~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~ 518 (1174)
..+.+++||+...+.-+-+-.+|...++ ...-+.|.... .+..
T Consensus 123 ~~~~kVLIfsq~t~~LDilE~~l~~~~~----------------------------------~y~RlDG~~~~-~~~k-- 165 (328)
T 3hgt_A 123 EYETETAIVCRPGRTMDLLEALLLGNKV----------------------------------HIKRYDGHSIK-SAAA-- 165 (328)
T ss_dssp TSCEEEEEEECSTHHHHHHHHHHTTSSC----------------------------------EEEESSSCCC--------
T ss_pred hCCCEEEEEECChhHHHHHHHHHhcCCC----------------------------------ceEeCCCCchh-hhhh--
Confidence 3557999999999999888888875554 23333444222 2211
Q ss_pred HHHhcCCceEEEechhhhhcCC-----cCCceEEEecccccCCCCccccCHHH-HHHhhcccCCC--CCCCccEEEEEeC
Q 001047 519 ELFQRGLVKVVFATETLAAGIN-----MPARTAVLSSLSKRTASGRIQLTSNE-LFQMAGRAGRR--GIDNRGHVVLVQT 590 (1174)
Q Consensus 519 ~~F~~G~ikVLVAT~tla~GID-----iP~v~vVI~~~~k~~~~~~~p~s~~~-y~Qr~GRAGR~--G~d~~G~~ill~~ 590 (1174)
-.++...|.+.|....-|+| ....++||. +|..+++.. .+|..-|+.|. |+.+.-.+|-+.+
T Consensus 166 --~~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~--------~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt 235 (328)
T 3hgt_A 166 --ANDFSCTVHLFSSEGINFTKYPIKSKARFDMLIC--------LDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVA 235 (328)
T ss_dssp ----CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEE--------CSTTCCTTSHHHHHHHCCC---------CCEEEEEE
T ss_pred --cccCCceEEEEECCCCCCcCcccccCCCCCEEEE--------ECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeC
Confidence 12455666666766666776 567788888 444344433 68877788886 4445666775554
Q ss_pred C
Q 001047 591 P 591 (1174)
Q Consensus 591 ~ 591 (1174)
.
T Consensus 236 ~ 236 (328)
T 3hgt_A 236 I 236 (328)
T ss_dssp T
T ss_pred C
Confidence 4
No 204
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.36 E-value=2 Score=49.80 Aligned_cols=49 Identities=18% Similarity=0.377 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHc--CCcEEEEccCCcchHHHHHHHHHHHHhc-CCeEEEE
Q 001047 159 RIDKFQRSSIEAFLR--GSSVVVSAPTSSGKTLIAEAAAVATVAN-QRRIFYT 208 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~--g~~vlv~apTGsGKTlv~~~~il~~l~~-g~rvlvl 208 (1174)
.+.+-+..++..++. +..++|++|||||||+..-. ++..+.. .++++++
T Consensus 150 g~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~a-llg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYA-GLQELNSSERNILTV 201 (418)
T ss_dssp CCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHH-HHHHHCCTTSCEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHH-HHhhcCCCCCEEEEe
Confidence 355666667766553 45688999999999986543 3444432 3344443
No 205
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=79.17 E-value=4.7 Score=47.46 Aligned_cols=20 Identities=35% Similarity=0.679 Sum_probs=16.9
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
+.+++.+|+|+|||+.+-..
T Consensus 50 ~gvLL~GppGtGKT~Larai 69 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAV 69 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 56999999999999887543
No 206
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=79.08 E-value=1.3 Score=47.01 Aligned_cols=51 Identities=20% Similarity=0.205 Sum_probs=34.3
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSNQKFREFRE 224 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraLa~Q~~~~l~~ 224 (1174)
.|.-++|.|++|+|||..++..+.+.+ ..+..++|++-.- -..|+.+++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~-~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE-RARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS-CHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC-CHHHHHHHHHH
Confidence 356789999999999988877666644 4467788876432 23444444443
No 207
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=78.77 E-value=8.2 Score=45.71 Aligned_cols=121 Identities=9% Similarity=0.024 Sum_probs=62.6
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc--cHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP--LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEI 253 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P--traLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~ 253 (1174)
.+++++++|+|||+.+...+......|.+++++.. .+..+.++........+ +.+ +...... + ..+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~-i~v--~~~~~~~--d------p~~i 171 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKAR-IPF--YGSYTEM--D------PVII 171 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHT-CCE--EECCCCS--C------HHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccC-ceE--EccCCCC--C------HHHH
Confidence 67889999999998877666555556777777764 34444444444433333 222 1111111 1 0122
Q ss_pred HHHHHhcccccccCCCCCCceeEEEEccccccccC-CcHHHHHHHHHHCCCCccEEEEccccC
Q 001047 254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI-SRGTVWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 254 L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~-~~g~~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
+...+... ...+++++|||=+=++... .....+..+.....++.-++.+.|+.+
T Consensus 172 ~~~al~~~--------~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g 226 (504)
T 2j37_W 172 ASEGVEKF--------KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG 226 (504)
T ss_dssp HHHHHHHH--------HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCC
T ss_pred HHHHHHHH--------HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccc
Confidence 22222210 0136789999998665311 111122222222344555777888764
No 208
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=78.47 E-value=5.2 Score=50.23 Aligned_cols=79 Identities=13% Similarity=0.085 Sum_probs=61.7
Q ss_pred CCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHH
Q 001047 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 520 (1174)
Q Consensus 441 ~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~ 520 (1174)
+.+++|.++++.-+...++.+... ...+...++.+||+++..+|..+...
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~------------------------------~~~~gi~v~~l~G~~~~~~r~~~~~~ 466 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVES------------------------------FSKFNIHVALLIGATTPSEKEKIKSG 466 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHH------------------------------HTCSSCCEEECCSSSCHHHHHHHHHH
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHH------------------------------hhhcCceEEEEeCCCCHHHHHHHHHH
Confidence 468899999988887776665421 11122368999999999999999999
Q ss_pred HhcCCceEEEechh-hhhcCCcCCceEEEe
Q 001047 521 FQRGLVKVVFATET-LAAGINMPARTAVLS 549 (1174)
Q Consensus 521 F~~G~ikVLVAT~t-la~GIDiP~v~vVI~ 549 (1174)
+.+|..+|+|+|.. +...+++.++.+||.
T Consensus 467 l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 467 LRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp HHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred HhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 99999999999964 456788888888776
No 209
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=77.70 E-value=1.9 Score=48.70 Aligned_cols=46 Identities=26% Similarity=0.293 Sum_probs=36.2
Q ss_pred HHHHHHc------CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q 001047 167 SIEAFLR------GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212 (1174)
Q Consensus 167 ai~~ll~------g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Ptr 212 (1174)
.+..++. |+-++|.+|.|+|||..+...+......+.+++|+.--.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4556665 467899999999999998888777777788898886543
No 210
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=77.57 E-value=5.3 Score=40.27 Aligned_cols=57 Identities=11% Similarity=0.011 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHcC--CcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHH
Q 001047 160 IDKFQRSSIEAFLRG--SSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSN 216 (1174)
Q Consensus 160 ~~~~Q~~ai~~ll~g--~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraLa~ 216 (1174)
..+-|..++..++.. +-.+|.++-|++||......++... ..|++|.+++|+..-..
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~ 94 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQM 94 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHH
Confidence 346789999988754 4678899999999987544444333 36889999999975444
No 211
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=77.16 E-value=1.7 Score=49.16 Aligned_cols=49 Identities=24% Similarity=0.183 Sum_probs=37.4
Q ss_pred HHHHHHc------CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q 001047 167 SIEAFLR------GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALS 215 (1174)
Q Consensus 167 ai~~ll~------g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa 215 (1174)
.++.++. |.-++|.+|+|+|||+.+...+......+.+++|+..-..+.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD 102 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc
Confidence 5666665 357889999999999988777766666788899987655443
No 212
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=75.45 E-value=2.2 Score=46.06 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=18.8
Q ss_pred HHcCCcEEEEccCCcchHHHHHH
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~ 193 (1174)
+..|..+++++|||||||+..-.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~ 44 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIAS 44 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHH
Confidence 45677899999999999987644
No 213
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=74.76 E-value=2 Score=47.62 Aligned_cols=89 Identities=12% Similarity=0.138 Sum_probs=55.2
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcH--
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVAN--QRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTT-- 251 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~--g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tp-- 251 (1174)
.++|.+|.|+|||..++..+.....+ +.+++|+..--++... . .+.+|-. ..++++..|
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---r-a~~lGvd-------------~d~llv~~~~~ 92 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---Y-LRSMGVD-------------PERVIHTPVQS 92 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---H-HHHTTCC-------------GGGEEEEECSB
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---H-HHHhCCC-------------HHHeEEEcCCC
Confidence 57899999999999988888777765 7899999876666432 2 2335521 012444433
Q ss_pred -HHH-HHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 252 -EIL-RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 252 -e~L-~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
+.+ ..++.... ...-..+++||||=+..+.
T Consensus 93 ~E~~~l~i~~~l~-----~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 93 LEQLRIDMVNQLD-----AIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHHHHHHHHHHHH-----TCCTTCCEEEEEECSTTCB
T ss_pred HHHHHHHHHHHHH-----HhhccCceEEEEecccccc
Confidence 333 22221100 0011368999999998774
No 214
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=74.70 E-value=2.9 Score=46.95 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=31.7
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
.|.-++|.|++|+|||..+...+......+..|+|++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 45678999999999999888777777678889998864
No 215
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=74.54 E-value=2.3 Score=47.54 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=33.9
Q ss_pred HHHHHH-----cCCcEEEEccCCcchHHHHHHHHHHHHhc------CCeEEEEcccHH
Q 001047 167 SIEAFL-----RGSSVVVSAPTSSGKTLIAEAAAVATVAN------QRRIFYTTPLKA 213 (1174)
Q Consensus 167 ai~~ll-----~g~~vlv~apTGsGKTlv~~~~il~~l~~------g~rvlvl~Ptra 213 (1174)
.+..++ .|.-++|.||+|+|||..+...+...... +.+++|+.--..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 445555 34678999999999998887776654443 678888875543
No 216
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=74.22 E-value=2.5 Score=50.42 Aligned_cols=47 Identities=17% Similarity=0.088 Sum_probs=28.4
Q ss_pred CHHHHHHHHH-HHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 161 DKFQRSSIEA-FLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 161 ~~~Q~~ai~~-ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
++.+..-+.. +..|..++|+||||||||+..- .++..+....+++.+
T Consensus 246 ~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~-aL~~~i~~~~giiti 293 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKFSAIVVGETASGKTTTLN-AIMMFIPPDAKVVSI 293 (511)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHH-HHGGGSCTTCCEEEE
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHH-HHHhhCCCCCCEEEE
Confidence 3334444443 4577899999999999997653 233333334444443
No 217
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=74.13 E-value=2.7 Score=44.43 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=27.6
Q ss_pred HHcCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEc
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTT 209 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~ 209 (1174)
+..|.-+.+.+|+|||||+.+-..+...+ ..+..++++.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34678899999999999987765553333 4555666654
No 218
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=72.89 E-value=9.4 Score=41.27 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=40.7
Q ss_pred hhHHHHHhhcCCccCCCCccChhhHHHHhhcCCchHHHHHHHHhc-ccCCCCHHhHHHHHhhhcccc
Q 001047 985 LRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNK-ILLDLKPAQLAAVCASLVSEG 1050 (1174)
Q Consensus 985 ~~~~~VL~~lgyl~~~~~~vt~~Gr~a~~i~~~~eLllte~l~~g-~~~~L~p~~laA~~s~~v~e~ 1050 (1174)
.+=...|..||.||.++ .+|..||..+++-- |--++-+|..+ .|.-+ ++++.++|++-.++
T Consensus 21 ~~A~~~L~~LgAld~~g-~lT~lG~~ma~lPl--~P~lakmLl~a~~~~c~--~~~l~iaA~Ls~~~ 82 (270)
T 3i4u_A 21 ITAMEQLYTLGALDDEG-LLTRLGRRMAEFPL--EPMLCKMLIMSVHLGCS--EEMLTIVSMLSVQN 82 (270)
T ss_dssp HHHHHHHHHHTSBCTTS-CBCHHHHHHTTSCS--CHHHHHHHHHHHHTTCH--HHHHHHHHHHTSSC
T ss_pred HHHHHHHHHcCCcCCCC-CccHHHHHHHhCCC--CHHHHHHHHHhhhcCCH--HHHHHHHHHHCCCc
Confidence 35567889999999886 89999999999975 44555555444 44433 44444555544444
No 219
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=72.88 E-value=14 Score=46.18 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=18.3
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
+.++++.||+|+|||.++...+
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la 228 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHH
Confidence 4689999999999998876544
No 220
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=72.81 E-value=3.2 Score=43.57 Aligned_cols=36 Identities=31% Similarity=0.345 Sum_probs=28.0
Q ss_pred cCC-cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 173 RGS-SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 173 ~g~-~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
+|+ ++++.++.|+|||..+.-.+......|.+++++
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 344 689999999999999877777777778776543
No 221
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=70.83 E-value=3.1 Score=47.47 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=23.9
Q ss_pred HcCCcEEEEccCCcchHHHHHHHHHHHHh-c-CCeEEEE
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEAAAVATVA-N-QRRIFYT 208 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~~il~~l~-~-g~rvlvl 208 (1174)
..|..++|+||||||||+..-..+ ..+. . .++++++
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~-~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMI-DYINQTKSYHIITI 171 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHH-HHHHHHSCCEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH-hhcCcCCCcEEEEe
Confidence 456789999999999998765433 2332 2 4555544
No 222
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=70.79 E-value=3.8 Score=44.86 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=27.7
Q ss_pred HcCCcEEEEccCCcchHHHHHHHHHHHHhc-CCeEEEEc
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEAAAVATVAN-QRRIFYTT 209 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~~il~~l~~-g~rvlvl~ 209 (1174)
..|.-++|.||+|+|||+.+...+...... |.+++|+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 356789999999999998876655444434 55777764
No 223
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=70.04 E-value=3 Score=46.99 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=33.8
Q ss_pred HHHHHHc-----CCcEEEEccCCcchHHHHHHHHHHHHh------cCCeEEEEcccHH
Q 001047 167 SIEAFLR-----GSSVVVSAPTSSGKTLIAEAAAVATVA------NQRRIFYTTPLKA 213 (1174)
Q Consensus 167 ai~~ll~-----g~~vlv~apTGsGKTlv~~~~il~~l~------~g~rvlvl~Ptra 213 (1174)
.+..++. |.-++|.||+|+|||..+...+..... .+.+++|+.-...
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4566664 457899999999999988776665433 3678888876543
No 224
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=69.80 E-value=2.6 Score=42.53 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=17.8
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.|+-++++||+|||||+..-.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 567889999999999987654
No 225
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=69.46 E-value=3.6 Score=46.54 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=22.7
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHh--cCCeEEEE
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVA--NQRRIFYT 208 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~--~g~rvlvl 208 (1174)
.+..++|+||||||||+..-. ++..+. .+++++.+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~-l~g~~~~~~~~~i~t~ 158 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAA-MLDYLNNTKYHHILTI 158 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHH-HHHHHHHHCCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHH-HHhcccCCCCcEEEEc
Confidence 456789999999999976543 333333 24555444
No 226
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=69.23 E-value=4.2 Score=40.97 Aligned_cols=36 Identities=28% Similarity=0.203 Sum_probs=25.2
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
.+..+++.|+.|||||+++-...-..-..+.++.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 345788999999999998866544333346666555
No 227
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=69.07 E-value=2.2 Score=47.72 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=15.8
Q ss_pred CcEEEEccCCcchHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~ 193 (1174)
+.++|+||||+|||.++..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999986643
No 228
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=68.15 E-value=2.8 Score=43.32 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=18.0
Q ss_pred cCCcEEEEccCCcchHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~ 194 (1174)
.|+-++++||+|+|||++.-..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L 28 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAV 28 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHH
Confidence 4677899999999999876543
No 229
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=67.98 E-value=2.9 Score=42.83 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=19.5
Q ss_pred HcCCcEEEEccCCcchHHHHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
..++.+++.||+|||||+++-...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Confidence 356789999999999999876544
No 230
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=67.89 E-value=3 Score=47.31 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=24.9
Q ss_pred HHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
+..|..++|+||||||||+..-.. +..+......+.+-
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l-~~~~~~~~g~I~ie 209 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKAL-MQEIPFDQRLITIE 209 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHH-HTTSCTTSCEEEEE
T ss_pred HhcCCEEEEECCCCCCHHHHHHHH-HhcCCCCceEEEEC
Confidence 557899999999999999865432 22233333444443
No 231
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=67.84 E-value=4.5 Score=41.98 Aligned_cols=34 Identities=32% Similarity=0.300 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHH
Q 001047 162 KFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 162 ~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.-|..++..+..|+-+.+.+|.|||||+.+-+.+
T Consensus 10 ~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 10 LGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp HHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHH
T ss_pred HhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHh
Confidence 3567788889999999999999999998765443
No 232
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=67.36 E-value=2.5 Score=46.69 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=16.0
Q ss_pred CCcEEEEccCCcchHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~ 193 (1174)
++-++|+||||||||.++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHH
Confidence 34578899999999987654
No 233
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=65.66 E-value=3.4 Score=41.54 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=18.4
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
++.++++|++|||||+++-...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999886544
No 234
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=65.33 E-value=5.6 Score=43.92 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=23.9
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
.+..+.+.+|+|||||+..-..+-..-..++++++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 356788999999999987654443333345566554
No 235
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=65.25 E-value=3.4 Score=42.43 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=17.1
Q ss_pred cCCcEEEEccCCcchHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~ 194 (1174)
.|+-++++||+|+|||+..-+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L 24 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKL 24 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999876543
No 236
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=65.25 E-value=11 Score=43.02 Aligned_cols=80 Identities=8% Similarity=-0.024 Sum_probs=60.8
Q ss_pred CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHH
Q 001047 439 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 518 (1174)
Q Consensus 439 ~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~ 518 (1174)
..+..+||.++++.-+...++.+...+ . ....+..+||+.+..++....
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~------------------------------~-~~~~v~~~~g~~~~~~~~~~~ 110 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLA------------------------------D-EKVKIFGFYSSMKKEEKEKFE 110 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHC------------------------------C-SSCCEEECCTTSCHHHHHHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHc------------------------------c-CCceEEEEECCCChhhHHHHH
Confidence 355789999999999988888776421 0 122689999999999998888
Q ss_pred HHHhcCCceEEEechhhh----hcCCcCCceEEEe
Q 001047 519 ELFQRGLVKVVFATETLA----AGINMPARTAVLS 549 (1174)
Q Consensus 519 ~~F~~G~ikVLVAT~tla----~GIDiP~v~vVI~ 549 (1174)
..+..|..+|+|+|.-.- .-++...+.+||.
T Consensus 111 ~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 111 KSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp HHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEE
T ss_pred HHhhcCCCCEEEECHHHHHHHHHHhccccccEEEE
Confidence 999999999999997432 1255567777665
No 237
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=64.11 E-value=3.3 Score=45.66 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=15.0
Q ss_pred cEEEEccCCcchHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~ 193 (1174)
-++|+||||||||.++..
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 578899999999987654
No 238
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=64.11 E-value=5.5 Score=43.67 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=17.8
Q ss_pred CcEEEEccCCcchHHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il 196 (1174)
..+++.||+|+|||.++-...-
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999988765443
No 239
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=63.70 E-value=4 Score=41.98 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=17.9
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.|+-++++||+|+|||.+.-.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~ 38 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNA 38 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHH
Confidence 678899999999999987654
No 240
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=63.50 E-value=5.8 Score=43.73 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=24.2
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
.|..+.+.+|+|+|||+..-..+-..-..++++++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4557789999999999876544332223456666653
No 241
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=63.47 E-value=7 Score=39.08 Aligned_cols=35 Identities=26% Similarity=0.150 Sum_probs=22.9
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
.-+.++++.|||||+.....+-..-..|.++-++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 35778999999999876554333224555655554
No 242
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=63.07 E-value=3.3 Score=41.28 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=17.5
Q ss_pred CCcEEEEccCCcchHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~ 194 (1174)
+..++++|+.|||||+++-..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~L 23 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCL 23 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 457899999999999987653
No 243
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=63.06 E-value=6.4 Score=40.18 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=18.7
Q ss_pred cCCcEEEEccCCcchHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.|..+++.||.|||||+++-...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46778899999999998876543
No 244
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=63.06 E-value=3.4 Score=42.48 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.++-+++.+|||+|||..+..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~ 53 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALE 53 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 356789999999999976543
No 245
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=62.80 E-value=3.8 Score=41.82 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=18.5
Q ss_pred HcCCcEEEEccCCcchHHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~ 193 (1174)
..|.-+++.||+|||||+++-.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4677889999999999987754
No 246
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=62.60 E-value=3.4 Score=46.28 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=18.5
Q ss_pred HHcCCcEEEEccCCcchHHHHH
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~ 192 (1174)
+..|+.+++++|||||||+..-
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~ 189 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIK 189 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999998543
No 247
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=62.55 E-value=4.8 Score=44.81 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=21.9
Q ss_pred HHHHHHcCCcEEEEccCCcchHHHHHHH
Q 001047 167 SIEAFLRGSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 167 ai~~ll~g~~vlv~apTGsGKTlv~~~~ 194 (1174)
+...+..+.++++.||+|+|||..+...
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~la~~l 66 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLSVNTL 66 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHHHHHH
Confidence 3344567889999999999999877543
No 248
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=62.51 E-value=8.9 Score=38.37 Aligned_cols=36 Identities=8% Similarity=-0.067 Sum_probs=23.3
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Ptr 212 (1174)
.+++.|+.|||||+++-...-..-..|..+.++ |+-
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~-~~~ 38 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII-NYG 38 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE-EHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE-ECC
Confidence 478999999999998865443322234445555 543
No 249
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=62.43 E-value=3.7 Score=43.99 Aligned_cols=19 Identities=37% Similarity=0.375 Sum_probs=15.5
Q ss_pred cEEEEccCCcchHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~ 194 (1174)
.++|+||||||||+++...
T Consensus 3 li~I~G~~GSGKSTla~~L 21 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQI 21 (253)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 4789999999999877543
No 250
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=62.33 E-value=5.4 Score=41.39 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=26.1
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHh------cCCeEEEEccc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVA------NQRRIFYTTPL 211 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~------~g~rvlvl~Pt 211 (1174)
.|.-+.+.+|+|||||+.+...+-.... .+..++++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 4567899999999999877654432222 14467777654
No 251
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=61.97 E-value=4.4 Score=41.35 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=18.3
Q ss_pred HcCCcEEEEccCCcchHHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~ 193 (1174)
..|.-+.+.||+|||||++.-.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~ 26 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRA 26 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHH
Confidence 3577889999999999987654
No 252
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=61.92 E-value=3.3 Score=40.80 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=16.2
Q ss_pred cEEEEccCCcchHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~ 194 (1174)
.++++||+|||||+++-..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999987654
No 253
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=61.36 E-value=6.1 Score=45.39 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=31.2
Q ss_pred HHHHHH-----cCCcEEEEccCCcchHHHHHHHHHHHHh------cCCeEEEEccc
Q 001047 167 SIEAFL-----RGSSVVVSAPTSSGKTLIAEAAAVATVA------NQRRIFYTTPL 211 (1174)
Q Consensus 167 ai~~ll-----~g~~vlv~apTGsGKTlv~~~~il~~l~------~g~rvlvl~Pt 211 (1174)
.+..++ .|.-++|.+|+|+|||..+...++..+. .+.+++|+.-.
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 455566 3467899999999999887755544433 24678888644
No 254
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=60.66 E-value=4.9 Score=41.23 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=18.9
Q ss_pred HcCCcEEEEccCCcchHHHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~~ 194 (1174)
..|+-++++||+|||||+++-..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L 32 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKV 32 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHH
Confidence 45678999999999999876543
No 255
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=60.57 E-value=19 Score=47.43 Aligned_cols=80 Identities=6% Similarity=-0.024 Sum_probs=60.5
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
.+.+++|.++++.-+...++.+...- ..+...++.+++..+..++..+..
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~------------------------------~~~~i~v~~l~~~~~~~~~~~~~~ 700 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRF------------------------------ANWPVRIEMISRFRSAKEQTQILA 700 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHS------------------------------TTTTCCEEEESTTSCHHHHHHHHH
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHh------------------------------hcCCCeEEEEeCCCCHHHHHHHHH
Confidence 34578888888877776666554210 111236888999999999999999
Q ss_pred HHhcCCceEEEec-hhhhhcCCcCCceEEEe
Q 001047 520 LFQRGLVKVVFAT-ETLAAGINMPARTAVLS 549 (1174)
Q Consensus 520 ~F~~G~ikVLVAT-~tla~GIDiP~v~vVI~ 549 (1174)
.+..|..+|+|+| ..+...+++.+..+||.
T Consensus 701 ~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 701 EVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp HHHTTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred HHhcCCCCEEEECHHHHhCCccccccceEEE
Confidence 9999999999999 45566788999888876
No 256
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=60.36 E-value=9.8 Score=50.28 Aligned_cols=71 Identities=14% Similarity=0.101 Sum_probs=49.0
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHH
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEI 253 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~ 253 (1174)
-+|.|..|||||.+...-|...+.. +.++++++|.. +..++..++...+|. .....+-|+|-..
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q-~TFt~~~rl~~~l~~------------~~~~~~~V~TFhs 70 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQ-MTFLMEYELAKTPDM------------GGMIRAQVFSFSR 70 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGG-GHHHHHHHHTCCSSC------------SEESSEEEECHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCc-ccHHHHHHHHHhhhh------------cceeeeEEecHHH
Confidence 3789999999999888777766654 46899999976 444444455443332 1124688999998
Q ss_pred HHHHHhc
Q 001047 254 LRNMLYQ 260 (1174)
Q Consensus 254 L~~~L~~ 260 (1174)
|...+.+
T Consensus 71 la~~il~ 77 (1166)
T 3u4q_B 71 LAWRVLQ 77 (1166)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8765544
No 257
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=60.27 E-value=4.1 Score=41.05 Aligned_cols=23 Identities=43% Similarity=0.575 Sum_probs=18.6
Q ss_pred HcCCcEEEEccCCcchHHHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~~ 194 (1174)
..|..+++.||.|||||+++-..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~L 29 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEAL 29 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 45678899999999999876543
No 258
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=60.12 E-value=4.7 Score=47.81 Aligned_cols=29 Identities=38% Similarity=0.472 Sum_probs=23.3
Q ss_pred HHHHHHHHcCCcEEEEccCCcchHHHHHH
Q 001047 165 RSSIEAFLRGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 165 ~~ai~~ll~g~~vlv~apTGsGKTlv~~~ 193 (1174)
..++..+..+.++++.||+|+|||..+-.
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHHHH
Confidence 34555667889999999999999987654
No 259
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=60.02 E-value=7.8 Score=43.75 Aligned_cols=22 Identities=45% Similarity=0.661 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCcchHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~ 194 (1174)
.+..+++.||+|+|||+++-..
T Consensus 50 ~~~~vll~GppGtGKT~la~~i 71 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETL 71 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 3468999999999999987654
No 260
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=59.99 E-value=5.7 Score=53.69 Aligned_cols=96 Identities=26% Similarity=0.270 Sum_probs=64.3
Q ss_pred HHHHHHc------CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 001047 167 SIEAFLR------GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI 240 (1174)
Q Consensus 167 ai~~ll~------g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~ 240 (1174)
.+..++. |+.+.|.+|.|||||+.++..+.+..+.|.+++|+.+--+|.... .+.+|-. +
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~----~~~~Gv~----------~ 1483 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY----ARKLGVD----------I 1483 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH----HHHTTCC----------G
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH----HHHcCCC----------H
Confidence 4555553 467999999999999999999988888999999999987776654 2234421 0
Q ss_pred CCCCcEEEEcH---HHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 241 NREAQILIMTT---EILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 241 ~~~~~IlV~Tp---e~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
.++++.-| |..+...... + .-..+++||||.+-.+.
T Consensus 1484 ---~~l~~~~p~~~e~~l~~~~~~---~----~s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1484 ---DNLLCSQPDTGEQALEICDAL---A----RSGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp ---GGCEEECCSSHHHHHHHHHHH---H----HHTCCSEEEESCSTTCC
T ss_pred ---HHeEEeCCCcHHHHHHHHHHH---H----HcCCCCEEEEccHHhCC
Confidence 12555555 3222222110 0 01368899999988775
No 261
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=59.86 E-value=6.6 Score=53.85 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=38.2
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKF 219 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~ 219 (1174)
.++++++++|+|+|||+.+...+.+.+.+|.+++|+.= -++.++.+
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT-TSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEc-cccHHHHH
Confidence 56899999999999999999999999999999999853 44445554
No 262
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=59.31 E-value=5.2 Score=40.40 Aligned_cols=20 Identities=25% Similarity=0.606 Sum_probs=16.2
Q ss_pred CCcEEEEccCCcchHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~ 193 (1174)
++-+.+.||+|||||++.-.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~ 20 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKK 20 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35678999999999987654
No 263
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=59.19 E-value=5.4 Score=41.59 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=18.2
Q ss_pred HHcCCcEEEEccCCcchHHHHHH
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~ 193 (1174)
+..|+-+.+.||+|||||+..-+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~ 42 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKK 42 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHH
Confidence 34788899999999999987654
No 264
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=58.80 E-value=7.6 Score=43.87 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=23.1
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
|..+.+.+|+|||||+..-..+-..-..++++++.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~ 191 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA 191 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEe
Confidence 44678999999999987654433222345666655
No 265
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=58.78 E-value=5.7 Score=39.69 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=19.1
Q ss_pred cCCcEEEEccCCcchHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.++.+++.|++|||||+++-...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 45789999999999999876543
No 266
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=58.69 E-value=4.7 Score=44.84 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=15.7
Q ss_pred CcEEEEccCCcchHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~ 193 (1174)
+.++|+||||||||.++..
T Consensus 6 ~~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3688999999999987654
No 267
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=58.68 E-value=9.4 Score=51.66 Aligned_cols=90 Identities=26% Similarity=0.207 Sum_probs=56.9
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCC--eEEEEeCCCCCCCCCcEEEEcH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDN--NVGLLTGDSAINREAQILIMTT 251 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~--~v~lltGd~~~~~~~~IlV~Tp 251 (1174)
|..+++.+|+|+|||..++..+...+..|.+++|+.-......-.. +.++.. ++.+.. + .|.
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~----~~lg~dl~~i~i~~--------p----~t~ 97 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA----RKLGVDIDNLLCSQ--------P----DTG 97 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHH----HHTTCCGGGCEEEC--------C----SSH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHH----HhhccCccceeeec--------c----CcH
Confidence 5789999999999999998888888888989999875443222221 123311 111111 1 245
Q ss_pred HHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 252 EILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 252 e~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
+.+..++..-. ...+.++||||++-.+.
T Consensus 98 e~l~~ll~~L~-------~~~~~~LVVIDSLt~L~ 125 (1706)
T 3cmw_A 98 EQALEICDALA-------RSGAVDVIVVDSVAALT 125 (1706)
T ss_dssp HHHHHHHHHHH-------HHTCCSEEEESCSTTCC
T ss_pred HHHHHHHHHHH-------hccCCCEEEEcchhhhc
Confidence 55555443210 01368899999999875
No 268
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=58.66 E-value=5.5 Score=40.15 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=18.7
Q ss_pred cCCcEEEEccCCcchHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+..++++|+.|||||+++-...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999876543
No 269
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.57 E-value=8.1 Score=44.81 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=17.9
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+.+|+.||+|+|||+.+-..+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA 236 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACA 236 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHH
Confidence 3689999999999998765433
No 270
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=58.39 E-value=8.5 Score=41.96 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=17.9
Q ss_pred CCcEEEEccCCcchHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~ 194 (1174)
+.++++.||+|+|||.++-..
T Consensus 50 ~~~vll~G~~GtGKT~la~~l 70 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRL 70 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 578999999999999887644
No 271
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=58.27 E-value=2.6 Score=46.75 Aligned_cols=34 Identities=29% Similarity=0.287 Sum_probs=24.0
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
.+..+++.+|+|+|||..+...+.. .|.+++|+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs 155 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYAT 155 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEE
Confidence 4466799999999999887766554 344444443
No 272
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=58.12 E-value=5.5 Score=39.95 Aligned_cols=22 Identities=27% Similarity=0.287 Sum_probs=18.2
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
+..+++.|+.|||||+++-...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999999876543
No 273
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=58.08 E-value=5.8 Score=39.20 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=17.5
Q ss_pred CCcEEEEccCCcchHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~ 194 (1174)
+..+++.||.|||||+++-..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 467999999999999887543
No 274
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=57.76 E-value=6.7 Score=42.94 Aligned_cols=32 Identities=9% Similarity=-0.007 Sum_probs=21.9
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
+.+++.||+|+|||..+-..+-.. +..++.+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~ 68 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM---GINPIMMS 68 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEe
Confidence 468899999999998876544332 44444443
No 275
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=57.73 E-value=9.3 Score=39.33 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEc
Q 001047 161 DKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTT 209 (1174)
Q Consensus 161 ~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~ 209 (1174)
++.++.. ..+..|..+++.|+.|||||+++-...-..- ..|..++++-
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 4455544 3345667889999999999988765432221 2354455554
No 276
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=57.62 E-value=5.5 Score=44.60 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=15.3
Q ss_pred cEEEEccCCcchHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~ 193 (1174)
.++|+||||||||.++..
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 578999999999987654
No 277
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.61 E-value=8.9 Score=43.92 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=18.1
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+.+|+.||+|+|||+.+-..+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA 203 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVA 203 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHH
Confidence 3789999999999998775443
No 278
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=57.59 E-value=8.9 Score=39.20 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=16.3
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
.-+.|.|+.|||||+.+-..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l 42 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQL 42 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45788999999999877543
No 279
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.57 E-value=8.6 Score=44.63 Aligned_cols=21 Identities=43% Similarity=0.688 Sum_probs=17.7
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
+.+|+.||+|+|||+.+-..+
T Consensus 216 rGvLL~GPPGtGKTllAkAiA 236 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVA 236 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 789999999999998875443
No 280
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=57.29 E-value=4.8 Score=40.73 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=25.6
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHH
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFRE 221 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~ 221 (1174)
++|.+++|||||..+...+.. +..++|+..-...-..+.++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~e~~~r 42 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDDEMAAR 42 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC------CH
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCHHHHHH
Confidence 689999999999877654422 56788888755443333333
No 281
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=57.08 E-value=8.2 Score=41.47 Aligned_cols=37 Identities=8% Similarity=-0.116 Sum_probs=29.6
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
|..++|.+.+|+|||+.+...+...+.+|-+++|++=
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~ 57 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSI 57 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEE
Confidence 3577888788888887777777888888999998864
No 282
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=57.07 E-value=6.8 Score=43.44 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=36.3
Q ss_pred HHHHHHc-----CCcEEEEccCCcchHHHHHHHHHHHH------------hcC----CeEEEEcccHHH-HHHHHHHH
Q 001047 167 SIEAFLR-----GSSVVVSAPTSSGKTLIAEAAAVATV------------ANQ----RRIFYTTPLKAL-SNQKFREF 222 (1174)
Q Consensus 167 ai~~ll~-----g~~vlv~apTGsGKTlv~~~~il~~l------------~~g----~rvlvl~PtraL-a~Q~~~~l 222 (1174)
.+..++. |.-++|.||+|+|||..+...+.... ..| .+++|+.--..+ ..++...+
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~ 163 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMA 163 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHH
Confidence 4555663 35789999999999988877666532 123 688888755433 34444333
No 283
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=56.51 E-value=10 Score=37.80 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=17.9
Q ss_pred cCCcEEEEccCCcchHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~ 194 (1174)
.|..+++.++.|||||+++-..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L 25 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMAL 25 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4567889999999999887554
No 284
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=56.11 E-value=10 Score=42.97 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=25.1
Q ss_pred CcEEE-EccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 175 SSVVV-SAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 175 ~~vlv-~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
+.+.| ++.-|.|||+++...+......|.+|+++=
T Consensus 144 kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 144 SVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 34444 468889999988776655556688888874
No 285
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=56.04 E-value=28 Score=34.94 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=49.5
Q ss_pred CcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC-----------CCCcEEEEcHH
Q 001047 184 SSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAIN-----------REAQILIMTTE 252 (1174)
Q Consensus 184 GsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~-----------~~~~IlV~Tpe 252 (1174)
.+.|... +.-++.....+.++||.++++.-+..++..|... +..+..++|+.+.. ...+|+|+|.-
T Consensus 29 ~~~K~~~-L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 105 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV 105 (185)
T ss_dssp GGGHHHH-HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT--TCCEEEEC--------CHHHHHHHHTSSSEEEEEC-
T ss_pred cHHHHHH-HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc--CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcCh
Confidence 4566543 3334444345778999999999999999988873 35688899876532 35789999942
Q ss_pred HHHHHHhcccccccCCCCCCceeEEEE
Q 001047 253 ILRNMLYQSVGMVSSESGLFDVDVIVL 279 (1174)
Q Consensus 253 ~L~~~L~~~~~~~~~~~~l~~v~lVIi 279 (1174)
+.. ...+..+++||.
T Consensus 106 -----~~~-------Gldi~~~~~VI~ 120 (185)
T 2jgn_A 106 -----AAR-------GLDISNVKHVIN 120 (185)
T ss_dssp -----------------CCCSBSEEEE
T ss_pred -----hhc-------CCCcccCCEEEE
Confidence 221 334667888876
No 286
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=55.76 E-value=17 Score=40.58 Aligned_cols=43 Identities=5% Similarity=-0.048 Sum_probs=26.8
Q ss_pred CCceeEEEEccccc-cccCCcHHHHHHHHHHCCCCccEEEEcccc
Q 001047 271 LFDVDVIVLDEVHY-LSDISRGTVWEEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 271 l~~v~lVIiDEaH~-l~d~~~g~~~e~ii~~l~~~~qiI~LSATl 314 (1174)
+.+..+|||||+|. +... -...+...+...|++..+|+.+.++
T Consensus 74 f~~~kvvii~~~~~kl~~~-~~~aLl~~le~p~~~~~~il~~~~~ 117 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAA-INEQLLTLTGLLHDDLLLIVRGNKL 117 (343)
T ss_dssp CCSCEEEEEECCSSCCCTT-HHHHHHHHHTTCBTTEEEEEEESCC
T ss_pred ccCCeEEEEECCCCCCChH-HHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 45788999999999 7642 2333444454445566566555444
No 287
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=55.45 E-value=7.2 Score=39.66 Aligned_cols=18 Identities=28% Similarity=0.672 Sum_probs=15.2
Q ss_pred CcEEEEccCCcchHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~ 192 (1174)
+-++|+||+|+|||.+.-
T Consensus 2 RpIVi~GPSG~GK~Tl~~ 19 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 568999999999998653
No 288
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=55.35 E-value=11 Score=37.83 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=20.2
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeEEE
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rvlv 207 (1174)
+++.|+.|||||+++-...-..-..|..++.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 6789999999999887644322223545543
No 289
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=55.29 E-value=4.7 Score=40.19 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=17.5
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.|.-+.+.||.|||||+.+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 566788999999999987654
No 290
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=55.26 E-value=6.7 Score=40.34 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=18.4
Q ss_pred HHHcCCcEEEEccCCcchHHHHHH
Q 001047 170 AFLRGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 170 ~ll~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.+..|+-+.+.+|+|||||+.+-.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~ 39 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRC 39 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHH
Confidence 567888999999999999987644
No 291
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=55.16 E-value=6.1 Score=38.84 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=16.5
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++.|+.|||||+++-...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999876543
No 292
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=55.12 E-value=6.4 Score=45.05 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=14.9
Q ss_pred cEEEEccCCcchHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~ 193 (1174)
-++|+||||+|||.++..
T Consensus 4 ~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred EEEEECcchhhHHHHHHH
Confidence 478899999999977643
No 293
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=54.89 E-value=6.9 Score=39.96 Aligned_cols=22 Identities=41% Similarity=0.419 Sum_probs=18.5
Q ss_pred cCCcEEEEccCCcchHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~ 194 (1174)
.|..+++.||.|||||+++-..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L 49 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGV 49 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999887654
No 294
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=54.89 E-value=5.1 Score=40.15 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=18.6
Q ss_pred cCCcEEEEccCCcchHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.|..+++.|+.|||||+++-...
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45578999999999999876543
No 295
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=54.82 E-value=50 Score=33.69 Aligned_cols=77 Identities=12% Similarity=0.061 Sum_probs=51.2
Q ss_pred CCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHH
Q 001047 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 520 (1174)
Q Consensus 441 ~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~ 520 (1174)
..++||.++++.-+...++.+....- ..+ ...+..+||+.....+.. .
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~------------------~~~-----------~~~v~~~~g~~~~~~~~~---~ 129 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSK------------------YMP-----------NVKVAVFFGGLSIKKDEE---V 129 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTT------------------TST-----------TCCEEEESCCSCHHHHHH---H
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHh------------------hCC-----------CceEEEEeCCCChHHHHH---H
Confidence 34899999999998888777653211 000 125788999988765543 3
Q ss_pred HhcCCceEEEechhh------hhcCCcCCceEEEe
Q 001047 521 FQRGLVKVVFATETL------AAGINMPARTAVLS 549 (1174)
Q Consensus 521 F~~G~ikVLVAT~tl------a~GIDiP~v~vVI~ 549 (1174)
+..+..+|+|+|.-. ...+++..+.+||.
T Consensus 130 ~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 130 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp HHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred HhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 445777999999631 23467777777765
No 296
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.80 E-value=10 Score=43.91 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=17.5
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
+.+|+.||+|+|||+.+-..+
T Consensus 207 rGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 679999999999998875433
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=54.79 E-value=7.4 Score=42.89 Aligned_cols=35 Identities=9% Similarity=0.269 Sum_probs=24.1
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
.|+.+.|.+|+|||||+.+-+.+ ..+ .+++++.+|
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~-gl~--~G~I~~~v~ 159 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLI-HFL--GGSVLSFAN 159 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHH-HHH--TCEEECGGG
T ss_pred CCCEEEEECCCCCcHHHHHHHHh-hhc--CceEEEEec
Confidence 67889999999999998765433 222 555654443
No 298
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=54.29 E-value=10 Score=45.23 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=29.7
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Ptr 212 (1174)
.|..++|.+|+|+|||+.+...+-.....|.+++|+++-.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee 319 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE 319 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 5578899999999999887665544444566788877643
No 299
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=53.78 E-value=17 Score=48.04 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=42.9
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhc-C-----------CeEEEEcccHHHHHHHHHHHHHHhC
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVAN-Q-----------RRIFYTTPLKALSNQKFREFRETFG 227 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~-g-----------~rvlvl~PtraLa~Q~~~~l~~~~g 227 (1174)
..+|.|.-|||||.+...-++..+.. | .++|+|+=|++-+.++..++.+.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 55999999999998877777777752 2 2899999999999999988887653
No 300
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=53.35 E-value=6.7 Score=41.74 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=17.0
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
+.+++.||+|+|||+.+-..
T Consensus 46 ~~vll~G~~GtGKT~la~~l 65 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAI 65 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 57999999999999877544
No 301
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=53.20 E-value=6.9 Score=38.77 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=15.8
Q ss_pred cEEEEccCCcchHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~ 194 (1174)
.++++|+.|||||+++-..
T Consensus 4 ~I~i~G~~GsGKST~a~~L 22 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREF 22 (181)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 5789999999999987543
No 302
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=53.10 E-value=11 Score=40.22 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=23.1
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
+..++++|+.|||||+++-...-..-..|..++++.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 346889999999999987654432222354444443
No 303
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=52.89 E-value=7.7 Score=40.53 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=18.3
Q ss_pred HHcCCcEEEEccCCcchHHHHHH
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~ 193 (1174)
+..|+-++++||.|||||+..-.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~ 35 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQA 35 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHH
Confidence 45778899999999999987654
No 304
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=52.71 E-value=6.7 Score=38.87 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=17.4
Q ss_pred CCcEEEEccCCcchHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~ 194 (1174)
|..+++.||.|||||+++-..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEV 28 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHH
Confidence 567889999999999887653
No 305
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=52.69 E-value=7.8 Score=39.04 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=19.5
Q ss_pred HcCCcEEEEccCCcchHHHHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
..+..+++.|+.|||||+++-...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999876544
No 306
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=52.34 E-value=8.7 Score=41.04 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=19.7
Q ss_pred cCCcEEEEccCCcchHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.|+.+++.|+.|||||+++-...
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999876544
No 307
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=51.79 E-value=15 Score=37.57 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=23.7
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEE
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlv 207 (1174)
.+..+++.|+.|||||+++-...-..-..+..+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~ 42 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL 42 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 46678999999999999887654332223444433
No 308
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=51.79 E-value=8.6 Score=43.31 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=29.6
Q ss_pred HHHHHHc-----CCcEEEEccCCcchHHHHHHHHHHHHh---c---CCeEEEEcc
Q 001047 167 SIEAFLR-----GSSVVVSAPTSSGKTLIAEAAAVATVA---N---QRRIFYTTP 210 (1174)
Q Consensus 167 ai~~ll~-----g~~vlv~apTGsGKTlv~~~~il~~l~---~---g~rvlvl~P 210 (1174)
.+..++. |+-+.|.+|.|||||..+...+..... . +++++|+.-
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 4556653 467889999999999887665544321 1 357777754
No 309
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=51.75 E-value=10 Score=31.65 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=21.3
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhh
Q 001047 1117 EMMMDCALDDGDLARLLRRTIDLLAQ 1142 (1174)
Q Consensus 1117 ~i~~~t~l~eGd~vR~~rrl~dll~Q 1142 (1174)
++|..-.+.||||||.+|.+....++
T Consensus 42 ~~Lr~LGi~eGDIIrVmk~l~~k~~r 67 (72)
T 3idw_A 42 SMLRTLGLREGDIVRVMKHLDKKFGR 67 (72)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCchhhHHHHHHHHHHHhCc
Confidence 46777789999999999999876554
No 310
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=51.74 E-value=23 Score=46.30 Aligned_cols=80 Identities=8% Similarity=-0.043 Sum_probs=61.8
Q ss_pred CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHH
Q 001047 439 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 518 (1174)
Q Consensus 439 ~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~ 518 (1174)
..+..+||.++++.-|..++..+...+. ....++.+|||++..+|....
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~-------------------------------~~i~v~~l~Gg~~~~er~~~~ 167 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLAD-------------------------------EKVKIFGFYSSMKKEEKEKFE 167 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSC-------------------------------TTSCEEEECTTCCTTHHHHHH
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhC-------------------------------CCCeEEEEeCCCCHHHHHHHH
Confidence 3456899999999999999888875321 112689999999999999999
Q ss_pred HHHhcCCceEEEechhhh----hcCCcCCceEEEe
Q 001047 519 ELFQRGLVKVVFATETLA----AGINMPARTAVLS 549 (1174)
Q Consensus 519 ~~F~~G~ikVLVAT~tla----~GIDiP~v~vVI~ 549 (1174)
..+.+|..+|||+|.-.- .-+++..+.+||.
T Consensus 168 ~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 168 KSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp HHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEE
T ss_pred HHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEE
Confidence 999999999999996422 1145667777765
No 311
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=51.03 E-value=9.2 Score=36.87 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=45.5
Q ss_pred CCCCCChhHHHHHHHH-hCCCCHHHHHHhcCC-ChhHHHHHHHHHHHHHhhcCCCC
Q 001047 1094 IPCCLDSQFSGMVEAW-ASGLTWREMMMDCAL-DDGDLARLLRRTIDLLAQIPKLP 1147 (1174)
Q Consensus 1094 ~~~~~~~~l~~~v~~W-a~G~~~~~i~~~t~l-~eGd~vR~~rrl~dll~Qi~~~~ 1147 (1174)
-|..+.+.+++-+..+ +.|.|+.+||.+.+| ..-.|-||+.+=.|+..++..|-
T Consensus 9 RPtk~t~e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~~ef~e~~~~Ar 64 (140)
T 4dyq_A 9 RPSDYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKAT 64 (140)
T ss_dssp -CCSCCTTHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcCHHHHHHHHHHH
Confidence 3456888899888776 899999999999999 89999999999888887776663
No 312
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=50.80 E-value=6.2 Score=41.31 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=14.0
Q ss_pred HcCCcEEEEccCCcchHHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~ 193 (1174)
..|+-+.+.||+|||||++.-.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~ 46 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANK 46 (231)
T ss_dssp ECCCEEEEECSCC----CHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 3567889999999999987654
No 313
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=50.80 E-value=15 Score=36.77 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=15.8
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
.-++++++.|||||+.....
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l 26 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKL 26 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHH
Confidence 45789999999999865443
No 314
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=50.45 E-value=9.3 Score=43.29 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=17.4
Q ss_pred cEEEEccCCcchHHHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVA 197 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~ 197 (1174)
-++|+||||||||.++......
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999988654433
No 315
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=50.36 E-value=64 Score=38.38 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=52.8
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHHhC-CCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCC
Q 001047 201 NQRRIFYTTPLKALSNQKFREFRETFG-DNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSE 268 (1174)
Q Consensus 201 ~g~rvlvl~PtraLa~Q~~~~l~~~~g-~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~ 268 (1174)
.+.++||.++++.-+..++..+.+.++ +..+..++|+... +...+|+|+|. ++.. .
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~-------G 405 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR-------G 405 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS-------S
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhc-------C
Confidence 467999999999999999999998765 5678899998753 24678999995 3332 4
Q ss_pred CCCCceeEEEEc
Q 001047 269 SGLFDVDVIVLD 280 (1174)
Q Consensus 269 ~~l~~v~lVIiD 280 (1174)
..+.++++||.-
T Consensus 406 iDip~v~~VI~~ 417 (563)
T 3i5x_A 406 MDFPNVHEVLQI 417 (563)
T ss_dssp CCCTTCCEEEEE
T ss_pred CCcccCCEEEEE
Confidence 456778888753
No 316
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=50.19 E-value=15 Score=36.72 Aligned_cols=32 Identities=16% Similarity=-0.012 Sum_probs=20.8
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEE
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlv 207 (1174)
.+++.|+.|||||+++-...-..-..|..++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 37889999999999876544322223444443
No 317
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=49.84 E-value=8.7 Score=43.59 Aligned_cols=22 Identities=45% Similarity=0.679 Sum_probs=18.1
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
..++++.||+|+|||.++-...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la 93 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLA 93 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 4689999999999998876443
No 318
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=49.82 E-value=16 Score=37.17 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=18.7
Q ss_pred cCCcEEEEccCCcchHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+..+++.|+.|||||+++-...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 45578899999999999886544
No 319
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=49.81 E-value=7.7 Score=38.92 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=17.3
Q ss_pred CCcEEEEccCCcchHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~ 194 (1174)
+..+++.|++|||||+++-..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L 23 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARI 23 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 456889999999999987653
No 320
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=49.76 E-value=9 Score=38.65 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=19.3
Q ss_pred HcCCcEEEEccCCcchHHHHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
..+..+++.|+.|||||+++-...
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999876543
No 321
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.74 E-value=12 Score=43.66 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=18.1
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+.+|+.||+|+|||+.+-..+
T Consensus 243 prGILLyGPPGTGKTlLAkAiA 264 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVA 264 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHH
Confidence 4789999999999998775443
No 322
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=49.73 E-value=14 Score=37.91 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.|.-+.|.||+|||||+.+-.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~ 41 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNP 41 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345778999999999986643
No 323
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=49.71 E-value=7.1 Score=40.02 Aligned_cols=20 Identities=15% Similarity=0.317 Sum_probs=16.2
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
-+++.|+.|||||+.+...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 36889999999999876543
No 324
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.15 E-value=15 Score=42.42 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=17.9
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+.+|+.||+|+|||+.+-..+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA 237 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVA 237 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHH
Confidence 3789999999999998765443
No 325
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=49.06 E-value=16 Score=37.62 Aligned_cols=33 Identities=30% Similarity=0.199 Sum_probs=24.8
Q ss_pred EEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 178 VVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 178 lv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
+....+|.|||+++.-.+......|.+|+++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 345568999999887766655567889998654
No 326
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=48.98 E-value=17 Score=37.01 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.0
Q ss_pred cCCcEEEEccCCcchHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+..+++.|+.|||||+++-...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 45678999999999999886554
No 327
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=48.96 E-value=15 Score=38.15 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=24.6
Q ss_pred HcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
+.|.-+++.|+.|||||++.....-..-..|..++++
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 4567788999999999998866443332345455444
No 328
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=48.78 E-value=9.2 Score=39.85 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=18.0
Q ss_pred cCCcEEEEccCCcchHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+..+++.|++|||||+++-...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999876543
No 329
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=48.74 E-value=8.4 Score=38.69 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=17.7
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
+..+++.|+.|||||+++-...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999999876543
No 330
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=48.61 E-value=1e+02 Score=32.50 Aligned_cols=66 Identities=6% Similarity=-0.000 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhCC---CCHHHHHHhcCCChhHHHHHHHHHHHH
Q 001047 1069 VINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASG---LTWREMMMDCALDDGDLARLLRRTIDL 1139 (1174)
Q Consensus 1069 l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~v~~Wa~G---~~~~~i~~~t~l~eGd~vR~~rrl~dl 1139 (1174)
+...+.....+......+...+|+..+ ++.-+.+-|..| .+-.+|.+...+..+.+.|.+.||++-
T Consensus 133 ~~~l~~~~~~~~~~~~~~~~~~gLt~~-----q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~ 201 (250)
T 1p4x_A 133 SKEFLNLMMYTMYFKNIIKKHLTLSFV-----EFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQ 201 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCHH-----HHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 555555455556666667788997643 344444556553 799999999999999999999999874
No 331
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=48.56 E-value=15 Score=40.86 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=27.2
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
-+++++..|.|||+++...+......|.+|+++-
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4567899999999998777766667788888875
No 332
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=48.49 E-value=15 Score=38.62 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=24.9
Q ss_pred cEEEEc-cCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 176 SVVVSA-PTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 176 ~vlv~a-pTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
.++|.+ .||+|||++....+.....+|.++.+.=|
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 455554 49999999987666555567888887544
No 333
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=48.39 E-value=9.5 Score=37.47 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=18.0
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
+++++.++.|||||+++-...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 589999999999999887644
No 334
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=48.26 E-value=99 Score=29.85 Aligned_cols=80 Identities=15% Similarity=0.137 Sum_probs=54.4
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------CCCCcEEEEcHHH
Q 001047 185 SGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-----------NREAQILIMTTEI 253 (1174)
Q Consensus 185 sGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-----------~~~~~IlV~Tpe~ 253 (1174)
..|.... .-++.. ..+.++||.++++.-+..++..|.+. | ..+..++|+.+. +...+|+|+|.
T Consensus 20 ~~K~~~L-~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~-~-~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-- 93 (163)
T 2hjv_A 20 ENKFSLL-KDVLMT-ENPDSCIIFCRTKEHVNQLTDELDDL-G-YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-- 93 (163)
T ss_dssp GGHHHHH-HHHHHH-HCCSSEEEECSSHHHHHHHHHHHHHT-T-CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG--
T ss_pred HHHHHHH-HHHHHh-cCCCcEEEEECCHHHHHHHHHHHHHc-C-CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC--
Confidence 4564332 233333 35678999999999999999999874 3 568889998642 24678999993
Q ss_pred HHHHHhcccccccCCCCCCceeEEEEc
Q 001047 254 LRNMLYQSVGMVSSESGLFDVDVIVLD 280 (1174)
Q Consensus 254 L~~~L~~~~~~~~~~~~l~~v~lVIiD 280 (1174)
.+.. ...+.++++||.-
T Consensus 94 ---~~~~-------Gld~~~~~~Vi~~ 110 (163)
T 2hjv_A 94 ---VAAR-------GIDIENISLVINY 110 (163)
T ss_dssp ---GGTT-------TCCCSCCSEEEES
T ss_pred ---hhhc-------CCchhcCCEEEEe
Confidence 2322 3456678888763
No 335
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=48.20 E-value=9.1 Score=38.99 Aligned_cols=20 Identities=40% Similarity=0.532 Sum_probs=17.0
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
..++++|+.|||||+++-..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L 38 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAI 38 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47999999999999987654
No 336
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=48.05 E-value=10 Score=37.65 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=17.3
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
+.+++.++.|||||+++-...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 368999999999999876543
No 337
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=48.05 E-value=7.4 Score=39.18 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=16.3
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
.-+++.+|.|||||+.+-..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 45788999999999877654
No 338
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=47.89 E-value=74 Score=30.87 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------CCCCcEEEEcHHHHH
Q 001047 187 KTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-----------NREAQILIMTTEILR 255 (1174)
Q Consensus 187 KTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~ 255 (1174)
|... +..++... .+.++||.++++.-+..++..|.+. +..+..++|+.+. +....|+|+|.
T Consensus 17 K~~~-l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~---- 88 (165)
T 1fuk_A 17 KYEC-LTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD---- 88 (165)
T ss_dssp HHHH-HHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG----
T ss_pred HHHH-HHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC----
Confidence 6543 33334332 5678999999999999999998873 3568889998652 34678999994
Q ss_pred HHHhcccccccCCCCCCceeEEEEc
Q 001047 256 NMLYQSVGMVSSESGLFDVDVIVLD 280 (1174)
Q Consensus 256 ~~L~~~~~~~~~~~~l~~v~lVIiD 280 (1174)
.+.. ...+..+++||.-
T Consensus 89 -~~~~-------G~d~~~~~~Vi~~ 105 (165)
T 1fuk_A 89 -LLAR-------GIDVQQVSLVINY 105 (165)
T ss_dssp -GGTT-------TCCCCSCSEEEES
T ss_pred -hhhc-------CCCcccCCEEEEe
Confidence 2332 3456678888763
No 339
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=47.83 E-value=15 Score=39.52 Aligned_cols=34 Identities=29% Similarity=0.335 Sum_probs=23.0
Q ss_pred CCHHHH-HHHHHHHcCC-----cEEEEccCCcchHHHHHH
Q 001047 160 IDKFQR-SSIEAFLRGS-----SVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 160 ~~~~Q~-~ai~~ll~g~-----~vlv~apTGsGKTlv~~~ 193 (1174)
..+.+. .++..+++++ .+++.||.|+|||+.+..
T Consensus 84 ~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~a 123 (267)
T 1u0j_A 84 YDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEA 123 (267)
T ss_dssp CCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHH
Confidence 344443 2345555543 589999999999987763
No 340
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=47.82 E-value=10 Score=38.42 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=18.8
Q ss_pred cCCcEEEEccCCcchHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+..+++.|+.|||||+++-...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 45678999999999999886543
No 341
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=47.53 E-value=15 Score=40.87 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=27.4
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
-+++++..|.|||+++...+......|.+|+++-
T Consensus 21 i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 21 WIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4667899999999998777766667788988873
No 342
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=47.21 E-value=11 Score=36.72 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=15.4
Q ss_pred CcEEEEccCCcchHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~ 193 (1174)
.-.+|.+|+|+|||.+...
T Consensus 24 g~~~I~G~NGsGKStil~A 42 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDA 42 (149)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3578999999999988543
No 343
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=46.71 E-value=11 Score=38.62 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=16.7
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++.||.|||||+++-...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999887643
No 344
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=46.71 E-value=9.3 Score=39.15 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=16.8
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.+.-+.+.||+|||||+++-+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~ 25 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQA 25 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHH
Confidence 445678999999999987654
No 345
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=46.66 E-value=11 Score=37.54 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=17.3
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
..++++++.|||||+++-...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 468999999999999886543
No 346
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=46.63 E-value=11 Score=44.07 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=17.2
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
+.+++.||+|+|||..+-..
T Consensus 64 ~~iLl~GppGtGKT~la~al 83 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAI 83 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHH
Confidence 68999999999999887543
No 347
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=46.51 E-value=16 Score=44.18 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=29.2
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
+-+++++..|.|||+++...+......|.+++++.
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 56788999999999998877777667888988874
No 348
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=46.49 E-value=15 Score=43.85 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=26.2
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhc-CCeEEEEc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVAN-QRRIFYTT 209 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~-g~rvlvl~ 209 (1174)
.|+.++|.+|+|||||+.+...++..+.+ +...+++.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 56889999999999998877654433332 44566664
No 349
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=46.43 E-value=11 Score=38.97 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=18.2
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
+..+++.|+.|||||+++-...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999886544
No 350
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=45.93 E-value=11 Score=36.96 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=17.3
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
+.+++.++.|||||+++-...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468899999999999876543
No 351
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=45.91 E-value=19 Score=42.65 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=21.2
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATV 199 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l 199 (1174)
.+.+++|.++||||||.+.-..+...+
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999987765555444
No 352
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=45.90 E-value=11 Score=37.57 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=15.4
Q ss_pred cEEEEccCCcchHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~ 193 (1174)
-.+|.+|+|||||.++..
T Consensus 28 ~~~i~G~NGsGKStll~a 45 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDA 45 (182)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 678999999999987654
No 353
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=45.82 E-value=11 Score=38.92 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=18.3
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
...+++.|+.|||||+++-...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999887644
No 354
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=45.82 E-value=9.8 Score=38.91 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=17.1
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.+..+.|.|++|||||+++-.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 455688999999999987654
No 355
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=45.50 E-value=10 Score=38.97 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.6
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++.||.|||||+++-...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999886543
No 356
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=45.43 E-value=10 Score=40.18 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=16.4
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
+.+++.+|+|+|||+.+-..
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i 69 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAV 69 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 45999999999999876543
No 357
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=45.23 E-value=11 Score=38.93 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=17.2
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
..+.+.||+|||||+++-+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999876543
No 358
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=45.19 E-value=80 Score=37.79 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=53.0
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHHhC-CCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCC
Q 001047 201 NQRRIFYTTPLKALSNQKFREFRETFG-DNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSE 268 (1174)
Q Consensus 201 ~g~rvlvl~PtraLa~Q~~~~l~~~~g-~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~ 268 (1174)
.+.++||.++++.-+..++..+.+.++ +..+..++|+... +...+|+|+|. .+.. .
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~-------G 354 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR-------G 354 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS-------S
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhc-------C
Confidence 467999999999999999999998765 5678889998753 24678999995 3332 4
Q ss_pred CCCCceeEEEEcc
Q 001047 269 SGLFDVDVIVLDE 281 (1174)
Q Consensus 269 ~~l~~v~lVIiDE 281 (1174)
..+.++++||.-.
T Consensus 355 iDip~v~~VI~~~ 367 (579)
T 3sqw_A 355 MDFPNVHEVLQIG 367 (579)
T ss_dssp CCCTTCCEEEEES
T ss_pred CCcccCCEEEEcC
Confidence 4567788888544
No 359
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=45.04 E-value=10 Score=39.17 Aligned_cols=33 Identities=24% Similarity=0.583 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHcC----CcEEEEccCCcchHHHHH
Q 001047 159 RIDKFQRSSIEAFLRG----SSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g----~~vlv~apTGsGKTlv~~ 192 (1174)
.+..+ ..++..++++ +.+++.+|.|+|||..+.
T Consensus 40 ~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 40 EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 34444 4455555544 358999999999998764
No 360
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=44.90 E-value=9.7 Score=41.55 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=16.5
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
.-++++||.|||||+++-..
T Consensus 34 ~livl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46889999999999887543
No 361
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=44.83 E-value=18 Score=40.66 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=27.1
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
-+++++..|.|||+++...+......|.+|+++-
T Consensus 28 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 28 YIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp EEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3567899999999988777666667788888875
No 362
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=44.58 E-value=7.2 Score=41.73 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=17.8
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+.+++.||+|+|||..+-...
T Consensus 44 ~~~vll~G~~GtGKT~la~~la 65 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVA 65 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHH
Confidence 3579999999999998876443
No 363
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=44.58 E-value=12 Score=37.89 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=17.4
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
..+++.|+.|||||+++-...
T Consensus 21 ~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999876543
No 364
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=44.52 E-value=13 Score=38.85 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=18.8
Q ss_pred cCCcEEEEccCCcchHHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il 196 (1174)
..+-+++.||+||||++++...+-
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445678899999999998866543
No 365
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=44.49 E-value=11 Score=37.63 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=16.7
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++.|+.|||||+++-...
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999876543
No 366
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=44.14 E-value=18 Score=40.66 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=25.2
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
.+++++++|+|||..+...+......|.++.++.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 6788999999999887665555445677766654
No 367
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=43.77 E-value=14 Score=38.19 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=17.6
Q ss_pred cEEEEccCCcchHHHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVA 197 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~ 197 (1174)
.+++.||+||||++++...+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999988765543
No 368
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=43.77 E-value=70 Score=32.66 Aligned_cols=66 Identities=23% Similarity=0.267 Sum_probs=49.5
Q ss_pred hcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCC
Q 001047 200 ANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSE 268 (1174)
Q Consensus 200 ~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~ 268 (1174)
..+.++||.++++.-+..++..+.+. | ..+..++|+.+. +...+|+|+|. ++.. .
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~-~-~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-------G 94 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRL-G-HPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAAR-------G 94 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHH-T-CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTTC-------S
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHc-C-CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhhc-------C
Confidence 35779999999999999999998874 3 558889998652 34678999993 3332 4
Q ss_pred CCCCceeEEEE
Q 001047 269 SGLFDVDVIVL 279 (1174)
Q Consensus 269 ~~l~~v~lVIi 279 (1174)
..+.++++||.
T Consensus 95 idi~~v~~Vi~ 105 (212)
T 3eaq_A 95 LDIPQVDLVVH 105 (212)
T ss_dssp SSCCCBSEEEE
T ss_pred CCCccCcEEEE
Confidence 45678888873
No 369
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=43.59 E-value=11 Score=41.06 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=14.9
Q ss_pred cEEEEccCCcchHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~ 193 (1174)
-+.|+||+|||||+.+-.
T Consensus 33 ii~I~G~sGsGKSTla~~ 50 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQ 50 (290)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999987654
No 370
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=43.45 E-value=24 Score=36.53 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=25.1
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCC-eEEEE-ccc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQR-RIFYT-TPL 211 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~-rvlvl-~Pt 211 (1174)
.|.-+++.|+.|||||++.....-..-..|. .++++ -|.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~ 42 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG 42 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCC
Confidence 4677889999999999988654433223443 34333 344
No 371
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=43.00 E-value=12 Score=41.66 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=17.5
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
..+++.||+|+|||+.+-..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia 72 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIA 72 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 679999999999998875543
No 372
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=42.74 E-value=21 Score=37.79 Aligned_cols=32 Identities=25% Similarity=0.230 Sum_probs=24.2
Q ss_pred EEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 178 VVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 178 lv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
++.+..|.|||+++...+......|.+|+++=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45788899999988776655556788888873
No 373
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=42.72 E-value=16 Score=38.24 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=19.2
Q ss_pred cCCcEEEEccCCcchHHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il 196 (1174)
.+..+++.|++|||||+++-...-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999998876543
No 374
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=42.48 E-value=64 Score=32.45 Aligned_cols=65 Identities=8% Similarity=0.050 Sum_probs=48.6
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCC
Q 001047 201 NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSES 269 (1174)
Q Consensus 201 ~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~ 269 (1174)
.+.++||.++++.-+..++..|... +..+..++|+.+. +...+|+|+|. .+.. ..
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~-------Gl 118 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLLK--GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASK-------GL 118 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHT-------TC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhc-------CC
Confidence 3568999999999999999999874 3568889998653 24678999993 2332 34
Q ss_pred CCCceeEEEE
Q 001047 270 GLFDVDVIVL 279 (1174)
Q Consensus 270 ~l~~v~lVIi 279 (1174)
.+.++++||.
T Consensus 119 di~~v~~VI~ 128 (191)
T 2p6n_A 119 DFPAIQHVIN 128 (191)
T ss_dssp CCCCCSEEEE
T ss_pred CcccCCEEEE
Confidence 5677888876
No 375
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=42.48 E-value=9.1 Score=42.63 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=17.5
Q ss_pred CCcEEEEccCCcchHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~ 194 (1174)
...+++.||+|+|||.++-..
T Consensus 45 ~~~vLl~G~~GtGKT~la~~l 65 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRAL 65 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHH
Confidence 457999999999999877643
No 376
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=42.46 E-value=9.6 Score=38.12 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=16.4
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
+.+.|++++|||||+.....+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 356789999999998876543
No 377
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=42.31 E-value=16 Score=42.98 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=18.2
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
..++++.||+|+|||.++...+
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la 222 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLA 222 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 3689999999999999876543
No 378
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=42.29 E-value=43 Score=33.03 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=48.8
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCC
Q 001047 201 NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSES 269 (1174)
Q Consensus 201 ~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~ 269 (1174)
.+.++||.++++.-+..++..|.+. | ..+..++|+.+. +...+|+|+|. .+. ...
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~-~-~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~-------~Gi 98 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD-G-HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCA-------RGI 98 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT-T-CCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCC-------TTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc-C-CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chh-------cCC
Confidence 4579999999999999999998873 3 568889998652 34678999993 222 244
Q ss_pred CCCceeEEEE
Q 001047 270 GLFDVDVIVL 279 (1174)
Q Consensus 270 ~l~~v~lVIi 279 (1174)
.+..+++||.
T Consensus 99 d~~~~~~Vi~ 108 (175)
T 2rb4_A 99 DVKQVTIVVN 108 (175)
T ss_dssp CCTTEEEEEE
T ss_pred CcccCCEEEE
Confidence 5678888885
No 379
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=42.23 E-value=19 Score=37.42 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=23.8
Q ss_pred EEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 178 VVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 178 lv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
+..+..|.|||+++...+......|.+++++=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 44567899999988776655556788888873
No 380
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=42.14 E-value=13 Score=37.59 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=16.3
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++.|+.|||||+++-...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 47899999999999876543
No 381
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=41.93 E-value=12 Score=39.61 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCcchHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIA 191 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~ 191 (1174)
.|+-+.+.+|.|||||+..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 6778899999999999754
No 382
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=41.88 E-value=12 Score=42.29 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=16.7
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
.-.+++||||+|||.+.....
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 457899999999998866433
No 383
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=41.70 E-value=14 Score=39.31 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=18.6
Q ss_pred cCCcEEEEccCCcchHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+..+.|.+|+|||||+++-+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45678899999999998876543
No 384
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=41.65 E-value=28 Score=49.47 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=28.9
Q ss_pred HHHHcCCcEEEEccCCcchHHHHHHHH--HHHHhcCCeEEEEcccHHHHH
Q 001047 169 EAFLRGSSVVVSAPTSSGKTLIAEAAA--VATVANQRRIFYTTPLKALSN 216 (1174)
Q Consensus 169 ~~ll~g~~vlv~apTGsGKTlv~~~~i--l~~l~~g~rvlvl~PtraLa~ 216 (1174)
+.+.....+++.||||||||.++-..+ +..+......+++..-+++..
T Consensus 918 e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~t~ 967 (2695)
T 4akg_A 918 YMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTK 967 (2695)
T ss_dssp HHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTSCH
T ss_pred HHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCH
Confidence 344566789999999999999876543 222322233344444455533
No 385
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=41.58 E-value=12 Score=37.24 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=13.7
Q ss_pred cCCcEEEEccCCcchHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~ 194 (1174)
.+..+++.|+.|||||+++-..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp -CCEEEEECCC----CHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3467899999999999987654
No 386
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=41.42 E-value=39 Score=40.12 Aligned_cols=74 Identities=5% Similarity=-0.091 Sum_probs=57.2
Q ss_pred CCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHHH
Q 001047 442 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 521 (1174)
Q Consensus 442 ~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F 521 (1174)
+.+||.++++.-+...+..|...++ .+..+||+.+..++..+...+
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~gi----------------------------------~~~~l~~~~~~~~~~~~~~~~ 111 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQANGV----------------------------------AAACLNSTQTREQQLEVMTGC 111 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTC----------------------------------CEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEECChHHHHHHHHHHHHHcCC----------------------------------cEEEEeCCCCHHHHHHHHHHH
Confidence 5789999999888887777765543 578899999999999999999
Q ss_pred hcCCceEEEechhh------hhcCCcCCceEEEe
Q 001047 522 QRGLVKVVFATETL------AAGINMPARTAVLS 549 (1174)
Q Consensus 522 ~~G~ikVLVAT~tl------a~GIDiP~v~vVI~ 549 (1174)
..|..+||++|.-- ...++...+.+||.
T Consensus 112 ~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vVi 145 (523)
T 1oyw_A 112 RTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAV 145 (523)
T ss_dssp HHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEE
T ss_pred hcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEE
Confidence 99999999999632 12344456666654
No 387
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=41.40 E-value=19 Score=37.72 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=22.5
Q ss_pred HHcCCcEEEEccCCcchHHHHHHHHHHHHhc----CCeEEEE
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEAAAVATVAN----QRRIFYT 208 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~~il~~l~~----g~rvlvl 208 (1174)
+..|.-+++.|+.|||||++.....-..-.. |..++++
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 3467789999999999999876654322223 5555544
No 388
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=41.40 E-value=19 Score=38.02 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=24.3
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
-+++.+..|+|||+.+...+.... .|.+++++-
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 577899999999988766554444 677777764
No 389
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=41.26 E-value=14 Score=36.12 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=16.5
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++.++.|||||+++-...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999999876543
No 390
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=41.17 E-value=14 Score=37.60 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=16.4
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
..+++.|+.|||||+++-..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L 35 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKL 35 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35889999999999987543
No 391
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=41.16 E-value=39 Score=40.83 Aligned_cols=59 Identities=7% Similarity=0.012 Sum_probs=49.6
Q ss_pred CCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHH
Q 001047 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 520 (1174)
Q Consensus 441 ~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~ 520 (1174)
.+.+||.++++.-+...+..|...++ .+..+||+++..++..+...
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi----------------------------------~~~~l~~~~~~~~~~~~~~~ 129 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGI----------------------------------SATMLNASSSKEHVKWVHAE 129 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTC----------------------------------CEEECCSSCCHHHHHHHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCC----------------------------------cEEEEeCCCCHHHHHHHHHH
Confidence 35899999999988888777765443 68889999999999988888
Q ss_pred H--hcCCceEEEech
Q 001047 521 F--QRGLVKVVFATE 533 (1174)
Q Consensus 521 F--~~G~ikVLVAT~ 533 (1174)
+ ..+..+|||+|.
T Consensus 130 l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 130 MVNKNSELKLIYVTP 144 (591)
T ss_dssp HHCTTCCCCEEEECH
T ss_pred hhcccCCCCEEEECh
Confidence 8 578999999998
No 392
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=41.14 E-value=20 Score=40.70 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHH---cCCcEEEEccCCcchHHHHHHH
Q 001047 160 IDKFQRSSIEAFL---RGSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 160 ~~~~Q~~ai~~ll---~g~~vlv~apTGsGKTlv~~~~ 194 (1174)
+-..-.++|..+. .|+.+.|.+|+|+|||......
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~I 194 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNI 194 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHH
Confidence 3344556777655 6899999999999999887653
No 393
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=41.04 E-value=13 Score=37.46 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=16.5
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.+.|.+++|||||+++-...
T Consensus 10 ~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57889999999999876543
No 394
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=40.98 E-value=13 Score=38.18 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=17.1
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il 196 (1174)
.+++.|+.|||||+++-...-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999998865443
No 395
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=40.92 E-value=14 Score=41.00 Aligned_cols=34 Identities=12% Similarity=0.070 Sum_probs=25.4
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Pt 211 (1174)
-++|.|+.|||||+..-.. .....+.++.|+.|.
T Consensus 6 v~~i~G~~GaGKTTll~~l--~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHI--LNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEEESSSSSCHHHHHHH--HHSCCCCCEEEECSS
T ss_pred EEEEEecCCCCHHHHHHHH--HhhcCCCcEEEEEec
Confidence 5789999999999865432 223467789999985
No 396
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=40.88 E-value=15 Score=38.00 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=18.0
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
+..+++.|+.|||||+++-...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999886544
No 397
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=40.83 E-value=20 Score=38.17 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=23.9
Q ss_pred EEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 178 VVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 178 lv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
+..+..|.|||+++...+......|.+|+++=
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34577889999988776665556788888863
No 398
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=40.82 E-value=17 Score=46.27 Aligned_cols=20 Identities=40% Similarity=0.498 Sum_probs=16.9
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++.||||+|||.++-...
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la 609 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLA 609 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999998876443
No 399
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=40.82 E-value=13 Score=40.01 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=16.0
Q ss_pred CcEEEEccCCcchHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~ 193 (1174)
+.+++.+|+|+|||+.+-.
T Consensus 74 ~gvll~Gp~GtGKTtl~~~ 92 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARA 92 (278)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHH
Confidence 4599999999999987654
No 400
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=40.70 E-value=28 Score=36.72 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=23.2
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCe
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRR 204 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~r 204 (1174)
.|.-+++.|+.|||||++.....-..-..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 57788999999999999876654333334545
No 401
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=40.66 E-value=20 Score=37.59 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=23.5
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
.|.-+++.|+.|||||++..... ..+..+..++.+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~-~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVY-HRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH-HHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH-HHHhcCCCceee
Confidence 45678899999999999876544 333324444443
No 402
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=40.65 E-value=18 Score=36.56 Aligned_cols=112 Identities=17% Similarity=0.148 Sum_probs=63.7
Q ss_pred EEccCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHHHHH
Q 001047 179 VSAPTSSGKTLIAEAAAVATVANQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRN 256 (1174)
Q Consensus 179 v~apTGsGKTlv~~~~il~~l~~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~L~~ 256 (1174)
.+...|+|||+++...+......|.+++++= |...+. .+++.. ..+.+++-+.++.+..
T Consensus 7 ~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~--------~~~~~~-----------~~~~~~~~~~~~~l~~ 67 (206)
T 4dzz_A 7 LNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLT--------NWSKAG-----------KAAFDVFTAASEKDVY 67 (206)
T ss_dssp CCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH--------HHHTTS-----------CCSSEEEECCSHHHHH
T ss_pred EeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHH--------HHHhcC-----------CCCCcEEecCcHHHHH
Confidence 3467889999988776666666788888874 333222 122211 1124555555577766
Q ss_pred HHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHHhc
Q 001047 257 MLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 326 (1174)
Q Consensus 257 ~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l~~ 326 (1174)
.+.. ...++++||||=.-.+ ......++... +.-++-+.++... .....++..
T Consensus 68 ~l~~---------l~~~yD~viiD~~~~~-----~~~~~~~l~~a--d~viiv~~~~~~~-~~~~~~~~~ 120 (206)
T 4dzz_A 68 GIRK---------DLADYDFAIVDGAGSL-----SVITSAAVMVS--DLVIIPVTPSPLD-FSAAGSVVT 120 (206)
T ss_dssp THHH---------HTTTSSEEEEECCSSS-----SHHHHHHHHHC--SEEEEEECSCTTT-HHHHHHHHH
T ss_pred HHHH---------hcCCCCEEEEECCCCC-----CHHHHHHHHHC--CEEEEEecCCHHH-HHHHHHHHH
Confidence 6653 1236899999965443 23333444443 3445566666655 555554443
No 403
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=40.58 E-value=15 Score=36.88 Aligned_cols=18 Identities=17% Similarity=0.466 Sum_probs=14.9
Q ss_pred cEEEEccCCcchHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~ 193 (1174)
.+.+.+|.|||||+..-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~ 19 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKK 19 (178)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987643
No 404
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=40.49 E-value=73 Score=38.98 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=58.1
Q ss_pred HHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCC-----------CCCCCcEEEEcHHHHHHHHhcccc
Q 001047 195 AVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSA-----------INREAQILIMTTEILRNMLYQSVG 263 (1174)
Q Consensus 195 il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~ 263 (1174)
+...+..+.++||.++|+.-+...+..|.+. | ..+..++|+.. .+...+|+|+|. .+.
T Consensus 438 l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~-g-i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~---- 506 (661)
T 2d7d_A 438 IQARIERNERVLVTTLTKKMSEDLTDYLKEI-G-IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLR---- 506 (661)
T ss_dssp HHHHHTTTCEEEEECSSHHHHHHHHHHHHHT-T-CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCS----
T ss_pred HHHHHhcCCeEEEEECCHHHHHHHHHHHHhc-C-CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhh----
Confidence 3444457889999999999999999999874 3 56788888763 224678999985 232
Q ss_pred cccCCCCCCceeEEEEccccccc
Q 001047 264 MVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 264 ~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
....+.++++||+=+++..+
T Consensus 507 ---~GlDip~v~lVi~~d~d~~G 526 (661)
T 2d7d_A 507 ---EGLDIPEVSLVAILDADKEG 526 (661)
T ss_dssp ---TTCCCTTEEEEEETTTTCCT
T ss_pred ---CCcccCCCCEEEEeCccccc
Confidence 34567789999999987643
No 405
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=40.33 E-value=14 Score=37.54 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=15.9
Q ss_pred cEEEEccCCcchHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~ 194 (1174)
.+.|.|+.|||||+++-..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L 21 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 4789999999999987554
No 406
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=40.15 E-value=19 Score=37.68 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=24.9
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
+.|++.-|.|||+++...+......|.+|+++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45688999999999877666555667888776
No 407
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=40.08 E-value=16 Score=37.01 Aligned_cols=42 Identities=17% Similarity=-0.004 Sum_probs=25.4
Q ss_pred CCceeEEEEccccccc--cCCcHHHHHHHHHHCCCCccEEEEccccC
Q 001047 271 LFDVDVIVLDEVHYLS--DISRGTVWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 271 l~~v~lVIiDEaH~l~--d~~~g~~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
..+.+++|+||+..+. +..+...+++++.. ...+|+-|+|++
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecC
Confidence 5678899999987663 33444445554442 223554467764
No 408
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=39.52 E-value=21 Score=43.38 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=20.8
Q ss_pred HHHHcCCcEEEEccCCcchHHHHHH
Q 001047 169 EAFLRGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 169 ~~ll~g~~vlv~apTGsGKTlv~~~ 193 (1174)
..+..|..+++.+|+|+|||+.+-.
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar~ 79 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQA 79 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHHHH
Confidence 3456788999999999999988754
No 409
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=39.49 E-value=1.2e+02 Score=31.46 Aligned_cols=76 Identities=16% Similarity=-0.005 Sum_probs=50.3
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
....+||.++++.-+..+++.+... .......+...+||.+...+...+.
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~ 150 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEY------------------------------CRACRLKSTCIYGGAPKGPQIRDLE 150 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHH------------------------------HHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHH------------------------------HhhcCceEEEEECCCChHHHHHHhc
Confidence 3457899999999888877666421 1112236788899988776554433
Q ss_pred HHhcCCceEEEech-----hhh-hcCCcCCceEEEe
Q 001047 520 LFQRGLVKVVFATE-----TLA-AGINMPARTAVLS 549 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~-----tla-~GIDiP~v~vVI~ 549 (1174)
. ..+|+|+|. .+. ..+++..+.+||.
T Consensus 151 ---~-~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 151 ---R-GVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp ---H-CCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred ---C-CCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 2 468999996 222 2457778877765
No 410
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=39.32 E-value=15 Score=37.38 Aligned_cols=19 Identities=37% Similarity=0.305 Sum_probs=15.6
Q ss_pred cEEEEccCCcchHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~ 194 (1174)
.+.+.||.|||||+++-..
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4678999999999987554
No 411
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=39.06 E-value=22 Score=37.43 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=23.7
Q ss_pred EEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 178 VVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 178 lv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
+..+..|.|||+++...+......|.+|+++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 4467788999998877666555678888886
No 412
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=39.00 E-value=19 Score=37.99 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=18.7
Q ss_pred cCCcEEEEccCCcchHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+..+++.||.|||||+++-...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999886654
No 413
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=38.73 E-value=64 Score=27.84 Aligned_cols=52 Identities=10% Similarity=0.028 Sum_probs=41.5
Q ss_pred CCChhH-HHHHHHHhCCCCHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCCC
Q 001047 1097 CLDSQF-SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPD 1148 (1174)
Q Consensus 1097 ~~~~~l-~~~v~~Wa~G~~~~~i~~~t~l~eGd~vR~~rrl~dll~Qi~~~~~ 1148 (1174)
.+.+.+ ..+|..+..|.|..+|++..++....|-||+++......+....+.
T Consensus 22 ~ys~e~k~~~v~~~~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~~~~~~~~~~ 74 (87)
T 2elh_A 22 SLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDKLRFMSRQSAT 74 (87)
T ss_dssp SCCHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHhccccccCCCc
Confidence 355565 4666667789999999999999999999999998887777666553
No 414
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=38.70 E-value=17 Score=38.33 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=18.0
Q ss_pred cCCcEEEEccCCcchHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~ 194 (1174)
.+..+++.||.|||||+.+-..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~L 47 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRI 47 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3568999999999999877553
No 415
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=38.66 E-value=28 Score=41.58 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=26.7
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcC----CeEEEEccc
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQ----RRIFYTTPL 211 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g----~rvlvl~Pt 211 (1174)
..+++|.|.||||||.+.-..++..+... .+++++=|-
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 46899999999999988776666555432 255555554
No 416
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=38.33 E-value=21 Score=39.15 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=16.0
Q ss_pred CCcEEEEccCCcchHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~ 193 (1174)
|.-+.|.||+|||||+.+-.
T Consensus 80 g~iigI~G~~GsGKSTl~~~ 99 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARV 99 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34677899999999987654
No 417
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=38.16 E-value=14 Score=38.92 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCcchHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~ 192 (1174)
.|+-+.+.+|.|||||+..-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~ 49 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLS 49 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 67788999999999997654
No 418
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=38.01 E-value=88 Score=38.28 Aligned_cols=77 Identities=12% Similarity=0.059 Sum_probs=56.7
Q ss_pred HHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCC-----------CCCCCcEEEEcHHHHHHHHhcccc
Q 001047 195 AVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSA-----------INREAQILIMTTEILRNMLYQSVG 263 (1174)
Q Consensus 195 il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~ 263 (1174)
+......+.++||.++|+.-+...+..|.+. | ..+..++|+.. .+...+|+|+|. .+.
T Consensus 432 l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~-g-i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~---- 500 (664)
T 1c4o_A 432 IRERAARGERTLVTVLTVRMAEELTSFLVEH-G-IRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLR---- 500 (664)
T ss_dssp HHHHHHTTCEEEEECSSHHHHHHHHHHHHHT-T-CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCC----
T ss_pred HHHHHhcCCEEEEEECCHHHHHHHHHHHHhc-C-CCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhh----
Confidence 3344457889999999999999999988873 3 56788888763 235678999984 232
Q ss_pred cccCCCCCCceeEEEEcccccc
Q 001047 264 MVSSESGLFDVDVIVLDEVHYL 285 (1174)
Q Consensus 264 ~~~~~~~l~~v~lVIiDEaH~l 285 (1174)
....+.++++||+=+++..
T Consensus 501 ---~GlDip~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 501 ---EGLDIPEVSLVAILDADKE 519 (664)
T ss_dssp ---TTCCCTTEEEEEETTTTSC
T ss_pred ---cCccCCCCCEEEEeCCccc
Confidence 2446778999998887654
No 419
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=38.01 E-value=38 Score=37.49 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=14.8
Q ss_pred cEEEEccCCcchHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~ 193 (1174)
-+.|.||+|||||+.+-.
T Consensus 94 iigI~GpsGSGKSTl~~~ 111 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRV 111 (321)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999987644
No 420
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=37.98 E-value=16 Score=39.52 Aligned_cols=19 Identities=42% Similarity=0.761 Sum_probs=15.9
Q ss_pred CcEEEEccCCcchHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~ 193 (1174)
+.+++.||.|+|||+.+-.
T Consensus 45 ~GvlL~Gp~GtGKTtLaka 63 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKA 63 (274)
T ss_dssp SEEEEESSTTSCHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 4599999999999987654
No 421
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=37.39 E-value=24 Score=39.36 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=27.6
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
+-+++++.-|.|||+++...+......|++|+++-
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45677899999999998777666666788888775
No 422
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=37.37 E-value=17 Score=37.81 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=16.7
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++.|+.|||||+++-...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999886554
No 423
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=37.34 E-value=30 Score=25.58 Aligned_cols=34 Identities=9% Similarity=-0.001 Sum_probs=29.7
Q ss_pred HHHHHHHhCCCCHHHHHHhcCCChhHHHHHHHHH
Q 001047 1103 SGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 1136 (1174)
Q Consensus 1103 ~~~v~~Wa~G~~~~~i~~~t~l~eGd~vR~~rrl 1136 (1174)
..++..|..|.|..+|.+..++....+-|++++.
T Consensus 12 ~~i~~~~~~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 12 AQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 4667778999999999999999999999998753
No 424
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=37.19 E-value=18 Score=41.99 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=17.1
Q ss_pred CCcEEEEccCCcchHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~ 193 (1174)
.+++++.+|+|+|||+++-.
T Consensus 50 ~~~iLl~GppGtGKT~lar~ 69 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARR 69 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 36899999999999987754
No 425
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=36.91 E-value=25 Score=34.50 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=17.4
Q ss_pred HcCCcEEEEccCCcchHHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~ 193 (1174)
..|.-+.+.+|.|+|||+..-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~ 52 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRG 52 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4566788999999999976543
No 426
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=36.70 E-value=14 Score=40.62 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=17.8
Q ss_pred HcCCcEEEEccCCcchHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~ 192 (1174)
..|+-+.|.+|+|||||+..-
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ 98 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILR 98 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHHH
Confidence 367889999999999998653
No 427
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=36.70 E-value=18 Score=36.98 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=15.7
Q ss_pred CcEEEEccCCcchHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~ 193 (1174)
.-.+|.+|+|+|||.+...
T Consensus 24 ~~~~I~G~NgsGKStil~a 42 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDA 42 (203)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHH
Confidence 4678999999999988654
No 428
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=36.70 E-value=15 Score=39.75 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCcchHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~ 192 (1174)
.|+-+.+.+|.|||||+..-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~ 52 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQ 52 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 67788999999999998653
No 429
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=36.62 E-value=1.2e+02 Score=35.40 Aligned_cols=73 Identities=11% Similarity=0.192 Sum_probs=49.5
Q ss_pred HHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhccccccc
Q 001047 198 TVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVS 266 (1174)
Q Consensus 198 ~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~ 266 (1174)
....+...++++....-+..+++.|.+..+ .+..++|+... +...+|+|+|+..+..
T Consensus 343 ~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~--~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~---------- 410 (510)
T 2oca_A 343 LAQKDENAFVMFKHVSHGKAIFDLIKNEYD--KVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST---------- 410 (510)
T ss_dssp HHTTTCEEEEEESSHHHHHHHHHHHHTTCS--SEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH----------
T ss_pred HHhcCCCeEEEEecHHHHHHHHHHHHHcCC--CeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc----------
Confidence 334455555555556666667777766432 68999998752 2467899999776553
Q ss_pred CCCCCCceeEEEEcccc
Q 001047 267 SESGLFDVDVIVLDEVH 283 (1174)
Q Consensus 267 ~~~~l~~v~lVIiDEaH 283 (1174)
...+.++++||+....
T Consensus 411 -GiDip~v~~vi~~~~~ 426 (510)
T 2oca_A 411 -GISVKNLHHVVLAHGV 426 (510)
T ss_dssp -SCCCCSEEEEEESSCC
T ss_pred -ccccccCcEEEEeCCC
Confidence 3467789999987665
No 430
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=36.59 E-value=82 Score=35.48 Aligned_cols=72 Identities=10% Similarity=0.079 Sum_probs=52.6
Q ss_pred HHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhccc
Q 001047 194 AAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSV 262 (1174)
Q Consensus 194 ~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~ 262 (1174)
-++.....+.++||.++++.-+..+++.+.+. +..+..++|+.+. +...+|+|+|. .+..
T Consensus 268 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-- 338 (417)
T 2i4i_A 268 DLLNATGKDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR-- 338 (417)
T ss_dssp HHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT--
T ss_pred HHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC--CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc--
Confidence 33433335779999999999999999999873 3568889998753 24678999995 3333
Q ss_pred ccccCCCCCCceeEEEE
Q 001047 263 GMVSSESGLFDVDVIVL 279 (1174)
Q Consensus 263 ~~~~~~~~l~~v~lVIi 279 (1174)
...+.++++||.
T Consensus 339 -----Gidip~v~~Vi~ 350 (417)
T 2i4i_A 339 -----GLDISNVKHVIN 350 (417)
T ss_dssp -----TSCCCCEEEEEE
T ss_pred -----CCCcccCCEEEE
Confidence 445778888885
No 431
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=36.47 E-value=13 Score=39.46 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=16.6
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
..++++|+.|||||+++-..
T Consensus 33 ~~i~l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIK 52 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46889999999999987543
No 432
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=36.19 E-value=17 Score=37.78 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=17.2
Q ss_pred cCCcEEEEccCCcchHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~ 192 (1174)
.|+-+.+.+|.|||||+..-
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk 53 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLK 53 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 67888999999999998654
No 433
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=36.12 E-value=16 Score=38.27 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=17.1
Q ss_pred cCCcEEEEccCCcchHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~ 192 (1174)
.|+-+.+.+|.|||||+..-
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~ 52 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLM 52 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 67888999999999997653
No 434
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=36.12 E-value=23 Score=39.86 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=18.9
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.+..+++|-| ++..|.||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4566678864 567899999999654
No 435
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=36.07 E-value=28 Score=39.17 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=27.3
Q ss_pred cEEEEccCCcchHHHHHHHHHHHH--hcCCeEEEEcc
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATV--ANQRRIFYTTP 210 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l--~~g~rvlvl~P 210 (1174)
-+++++..|.|||+++...+.... ..|++|+++-.
T Consensus 20 i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~ 56 (354)
T 2woj_A 20 WIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIST 56 (354)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 456789999999998877666666 67888888753
No 436
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=35.99 E-value=34 Score=34.81 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=24.1
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeEEEE-cccH
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYT-TPLK 212 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl-~Ptr 212 (1174)
+++-|+-|||||++.....-..-..|..++++ -|.-
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~ 39 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGG 39 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 46789999999998876543333456666655 3544
No 437
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=35.88 E-value=16 Score=38.76 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=17.5
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.|+-+.+.+|.|||||+..-+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~ 54 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKL 54 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 677889999999999986543
No 438
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=35.72 E-value=23 Score=44.23 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=18.3
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
..++++.||+|+|||.++...+
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la 222 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLA 222 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 3589999999999999876543
No 439
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=35.67 E-value=16 Score=39.07 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=17.6
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.|+-+.+.+|.|||||+..-+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~ 65 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKL 65 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 678899999999999986543
No 440
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=35.56 E-value=31 Score=37.19 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=24.5
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
+.|++..|.|||+++...+......|.+|+++
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 45578999999998877665555678888876
No 441
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=35.45 E-value=25 Score=39.06 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=18.6
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.+..++.|.+ ++..|.||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3455667765 667899999999764
No 442
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=35.15 E-value=17 Score=37.96 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCcchHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~ 192 (1174)
.|+-+.+.+|.|||||+..-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~ 48 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLY 48 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56788899999999997643
No 443
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=35.09 E-value=32 Score=36.56 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=24.2
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
+.|++.-|.|||+++...+......|.+|+++
T Consensus 4 I~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 44578899999998876665555678888885
No 444
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=34.90 E-value=1e+02 Score=29.44 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=43.2
Q ss_pred HHHHhhHHHHHhhcCCccC----CC-----CccChhhHHHHhhcCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 001047 981 WKEFLRISNVIHETRALDI----NT-----QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 1046 (1174)
Q Consensus 981 ~~~f~~~~~VL~~lgyl~~----~~-----~~vt~~Gr~a~~i~~~~eLllte~l~~g~~~~L~p~~laA~~s~~ 1046 (1174)
...--++++-|.+-|||.. ++ ..+|++|+-+..-- .+ ...-+...+|.+|+++|++.+...|
T Consensus 60 ~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~--~~--~~~~~~~~~~~~l~~ee~~~l~~~L 130 (151)
T 4aik_A 60 QPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQV--DG--VISSTRKEILGGISSDEIAVLSGLI 130 (151)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHH--HH--HHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHH--HH--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3445688899999999952 21 26899999776532 11 2234456688999999999887764
No 445
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=34.81 E-value=32 Score=37.53 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=26.5
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
+.+.|.+.-|.|||+++...+......|.+|+++
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 5566778999999998877666555678888887
No 446
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=34.53 E-value=18 Score=39.01 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCcchHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~ 192 (1174)
.|+-+.+.+|.|||||+..-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~ 55 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLR 55 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHH
Confidence 67788999999999998653
No 447
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=34.53 E-value=26 Score=40.17 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=17.8
Q ss_pred HHHHHcCCc--EEEEccCCcchHHHH
Q 001047 168 IEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 168 i~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
+..++.|-+ ++..|.||||||...
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 344667754 567899999999764
No 448
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=34.41 E-value=20 Score=36.39 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=29.3
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHH----HHHHHhCC
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFR----EFRETFGD 228 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~----~l~~~~g~ 228 (1174)
.+.+.|+.|||||+++-...-.. | +.+..+=.++.+.+. ++.+.||.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l---g---~~vid~D~~~~~~~~~~~~~i~~~fG~ 64 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY---G---AHVVNVDRIGHEVLEEVKEKLVELFGG 64 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---C---CEEEEHHHHHHHHHHHTHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C---CEEEECcHHHHHHHHHHHHHHHHHhCh
Confidence 46789999999999886654321 3 233444455555443 45566775
No 449
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=34.41 E-value=2.6e+02 Score=28.97 Aligned_cols=75 Identities=17% Similarity=0.082 Sum_probs=49.9
Q ss_pred CCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHH
Q 001047 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 520 (1174)
Q Consensus 441 ~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~ 520 (1174)
..++||.++++.-+...++.+.... ..+...+..++||.....+....
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~------------------------------~~~~~~~~~~~g~~~~~~~~~~~-- 158 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALG------------------------------SSIGVQSAVIVGGIDSMSQSLAL-- 158 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHH------------------------------GGGTCCEEEECTTSCHHHHHHHH--
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHh------------------------------ccCCeeEEEEECCCChHHHHHHh--
Confidence 4579999999998888877665221 11223578889998866544332
Q ss_pred HhcCCceEEEechh-----hh--hcCCcCCceEEEe
Q 001047 521 FQRGLVKVVFATET-----LA--AGINMPARTAVLS 549 (1174)
Q Consensus 521 F~~G~ikVLVAT~t-----la--~GIDiP~v~vVI~ 549 (1174)
.+..+|+|+|.- +. .++++..+.+||.
T Consensus 159 --~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 159 --AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp --HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred --cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 246789999953 22 3567777877765
No 450
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=34.40 E-value=32 Score=38.36 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=23.1
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
.+..+.+.||+|+|||+..-..+-.....++++.|+.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 4567889999999999866543322222345555443
No 451
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=34.31 E-value=18 Score=38.69 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=17.3
Q ss_pred HcCCcEEEEccCCcchHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~ 192 (1174)
..|+-+.+.+|.|||||+..-
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk 51 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLIN 51 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred eCCCEEEEECCCCCCHHHHHH
Confidence 367788999999999997643
No 452
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=34.16 E-value=31 Score=38.41 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=22.4
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
+..+.+.+++|+|||..+...+......+.++.++
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~ 90 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI 90 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 45788899999999987654433322345554444
No 453
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=34.15 E-value=18 Score=38.19 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCcchHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~ 192 (1174)
.|+-+.+.+|.|||||+..-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~ 50 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLS 50 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 67788999999999998643
No 454
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=34.15 E-value=20 Score=36.81 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=16.5
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
..+.+.|+.|||||+++-..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35789999999999987654
No 455
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=34.02 E-value=71 Score=39.93 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=43.9
Q ss_pred HHHHhhHHHHHhhcCCccCCCCccChhhHHHHhhcCCchHHHHHHHHhcccCCCCHHhHHHHHhhhcccc
Q 001047 981 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEG 1050 (1174)
Q Consensus 981 ~~~f~~~~~VL~~lgyl~~~~~~vt~~Gr~a~~i~~~~eLllte~l~~g~~~~L~p~~laA~~s~~v~e~ 1050 (1174)
.....+-++.|..+|+||.++ .+|..|+.++++.- +--+--.++....|.-+ .+++.++|++-...
T Consensus 488 ~~~i~~a~~~L~~lgald~~~-~lT~lG~~~a~~pl-~p~~~~~l~~~~~~~c~--~~~l~i~a~ls~~~ 553 (773)
T 2xau_A 488 PETMMRALEELNYLACLDDEG-NLTPLGRLASQFPL-DPMLAVMLIGSFEFQCS--QEILTIVAMLSVPN 553 (773)
T ss_dssp HHHHHHHHHHHHHTTSBCTTS-CBCHHHHHHTTSSS-CHHHHHHHHHGGGGTCH--HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHcCCcccCC-CcChhhhhhccccC-CHHHHHHHHhhcccCch--hHHHHHHHhcccCC
Confidence 344567788899999999876 89999999999986 44444444444444433 34445555554444
No 456
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=33.85 E-value=18 Score=38.19 Aligned_cols=21 Identities=38% Similarity=0.400 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.|.-+-|.||.|||||+++-+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~ 44 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEK 44 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 455677899999999988754
No 457
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=33.80 E-value=16 Score=38.71 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCcchHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~ 192 (1174)
.|+-+.+.+|.|||||+..-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~ 46 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFS 46 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56788999999999998654
No 458
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=33.80 E-value=24 Score=39.42 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=18.2
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.+..++.|-+ ++..|.||||||...
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3444567754 567899999999764
No 459
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=33.79 E-value=15 Score=44.44 Aligned_cols=18 Identities=6% Similarity=0.226 Sum_probs=15.6
Q ss_pred cEEEEccCCcchHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~ 193 (1174)
++++.||+|+|||..+-.
T Consensus 329 ~vLL~GppGtGKT~LAr~ 346 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQF 346 (595)
T ss_dssp CEEEEESSCCTHHHHHHS
T ss_pred ceEEECCCchHHHHHHHH
Confidence 899999999999976543
No 460
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=33.69 E-value=35 Score=34.88 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=25.6
Q ss_pred EEEccCCcchHHHHHHHHHHHHhcCCeEEEE--cccHHH
Q 001047 178 VVSAPTSSGKTLIAEAAAVATVANQRRIFYT--TPLKAL 214 (1174)
Q Consensus 178 lv~apTGsGKTlv~~~~il~~l~~g~rvlvl--~PtraL 214 (1174)
+.....|.|||+++...+......| +++++ =|...+
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~ 42 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSA 42 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCH
Confidence 4568889999998877665555667 88885 355444
No 461
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=33.66 E-value=18 Score=38.72 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=16.8
Q ss_pred cCCcEEEEccCCcchHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~ 192 (1174)
.|+-+.+.||.|||||+..-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk 50 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLR 50 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56788899999999997643
No 462
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.53 E-value=25 Score=40.21 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~~ 192 (1174)
.+..++.|.+ ++..|.||||||....
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
No 463
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=33.44 E-value=36 Score=38.13 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=23.2
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
..+.+.|++|+|||..+-..+-.....+.++.|+.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 35789999999999877654433333455555554
No 464
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=33.41 E-value=27 Score=39.13 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=18.6
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.+..++.|.+ ++..|.||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4455677864 567899999999664
No 465
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=33.34 E-value=36 Score=37.18 Aligned_cols=34 Identities=15% Similarity=0.455 Sum_probs=24.7
Q ss_pred CcEEEEcc-CCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 175 SSVVVSAP-TSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 175 ~~vlv~ap-TGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
+.++|.++ .|.|||+++...+......|++|+++
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 45656554 68999988776665555678888887
No 466
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=33.30 E-value=28 Score=38.71 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=19.8
Q ss_pred HHHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 166 SSIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 166 ~ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
..+..++.|.+ ++..|.||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35666778865 567899999999654
No 467
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=33.15 E-value=27 Score=39.42 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=18.4
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.+..++.|-+ ++..|.||||||...
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 4455677764 567899999999654
No 468
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=33.08 E-value=22 Score=38.72 Aligned_cols=20 Identities=10% Similarity=0.298 Sum_probs=13.0
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
.-+.|+||.|||||+++-..
T Consensus 6 ~iIgItG~sGSGKSTva~~L 25 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTF 25 (290)
T ss_dssp CEEEEESCC---CCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35778999999999887543
No 469
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=33.06 E-value=28 Score=39.16 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=18.9
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.+..++.|.+ ++..|.||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4556678865 567899999999764
No 470
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=33.05 E-value=34 Score=38.34 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=27.8
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHH--hcCCeEEEEcc
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATV--ANQRRIFYTTP 210 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l--~~g~rvlvl~P 210 (1174)
+-+++++.-|.|||+++...+.... ..|.+|+++--
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~ 56 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIST 56 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 4567789999999998877666655 67888887753
No 471
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=33.00 E-value=28 Score=39.18 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=18.7
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.+..++.|.+ ++..+.||||||...
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4556678865 566899999999664
No 472
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=32.97 E-value=28 Score=38.93 Aligned_cols=25 Identities=40% Similarity=0.519 Sum_probs=18.4
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.+..+++|.+ ++..+.||||||...
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445667765 567899999999764
No 473
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=32.75 E-value=33 Score=35.73 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=23.1
Q ss_pred EEEccCCcchHHHHHHHHHHHHhc-CCeEEEE
Q 001047 178 VVSAPTSSGKTLIAEAAAVATVAN-QRRIFYT 208 (1174)
Q Consensus 178 lv~apTGsGKTlv~~~~il~~l~~-g~rvlvl 208 (1174)
+.++.-|.|||+++...+...... |.+|+++
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 40 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred EECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence 445678999999887666555555 8888887
No 474
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=32.73 E-value=29 Score=39.19 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=18.3
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.+..++.|-+ ++..|.||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3445667764 567899999999764
No 475
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=32.72 E-value=29 Score=38.92 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=18.3
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.+..++.|-+ ++..|.||||||...
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3445667754 567899999999654
No 476
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=32.58 E-value=20 Score=38.35 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCcchHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~ 192 (1174)
.|+-+.+.+|.|||||+..-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk 59 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLR 59 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 67788999999999998643
No 477
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=32.48 E-value=24 Score=37.90 Aligned_cols=21 Identities=24% Similarity=0.484 Sum_probs=17.6
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.|+-+.+.+|.|||||+.+-+
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~ 65 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSAT 65 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 677889999999999986543
No 478
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=32.47 E-value=40 Score=36.41 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=27.6
Q ss_pred CCcEEEEc---cCCcchHHHHHHHHHHHHhcCCeEEEE--cccHHH
Q 001047 174 GSSVVVSA---PTSSGKTLIAEAAAVATVANQRRIFYT--TPLKAL 214 (1174)
Q Consensus 174 g~~vlv~a---pTGsGKTlv~~~~il~~l~~g~rvlvl--~PtraL 214 (1174)
++.+.|.. .-|.|||+++...+......|.+|+++ =|...+
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~ 79 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATL 79 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCH
Confidence 45555554 889999988776665555678888874 454433
No 479
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=32.43 E-value=33 Score=36.85 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=24.4
Q ss_pred CcEEEEc-cCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 175 SSVVVSA-PTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 175 ~~vlv~a-pTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
+.++|.+ ..|.|||+++...+......|.+|+++
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 4455654 468999988776665555678888876
No 480
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=32.35 E-value=20 Score=38.67 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=17.5
Q ss_pred HcCCcEEEEccCCcchHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~ 192 (1174)
..|+-+.|.+|.|||||+..-
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk 63 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAA 63 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 367788999999999997654
No 481
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=32.32 E-value=28 Score=39.16 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=18.2
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.+..++.|.+ ++..|.||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 3445667754 567899999999654
No 482
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=32.30 E-value=25 Score=37.39 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=17.6
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.|+-+.+.+|.|||||+.+-+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~ 48 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKI 48 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 677889999999999986543
No 483
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=32.05 E-value=21 Score=39.34 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.|.-+.|.||+|||||+.+-.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~ 109 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARV 109 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHH
Confidence 345677899999999987654
No 484
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=31.96 E-value=21 Score=38.04 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCcchHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~ 192 (1174)
.|+-+.+.+|.|||||+..-
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk 44 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLA 44 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHH
Confidence 56788999999999998654
No 485
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=31.95 E-value=28 Score=39.10 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=18.3
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.+..++.|.+ ++..|.||||||...
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 3445667764 567899999999764
No 486
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=31.81 E-value=30 Score=39.04 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=18.5
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.+..++.|.+ ++..|.||||||...
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4555677864 567899999999654
No 487
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=31.81 E-value=21 Score=38.41 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCcchHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~ 192 (1174)
.|+-+.+.+|.|||||+..-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~ 51 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQ 51 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHH
Confidence 66788899999999998653
No 488
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=31.80 E-value=29 Score=39.07 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=18.4
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.+..++.|-+ ++..|.||||||...
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4455667865 567899999999654
No 489
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=31.73 E-value=20 Score=38.13 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCcchHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~ 192 (1174)
.|+-+.+.+|.|||||+..-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~ 49 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLD 49 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 66788899999999998653
No 490
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=31.59 E-value=21 Score=38.33 Aligned_cols=20 Identities=40% Similarity=0.617 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCcchHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~ 192 (1174)
.|+-+.+.+|.|||||+..-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk 68 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLR 68 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEEcCCCCcHHHHHH
Confidence 66788999999999998653
No 491
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=31.56 E-value=21 Score=38.71 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCcchHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~ 192 (1174)
.|+-+.+.+|.|||||+..-
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk 65 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLN 65 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHH
Confidence 67788999999999998643
No 492
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=31.54 E-value=62 Score=31.19 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=45.1
Q ss_pred ccHHHHhhHHHHHhhcCCccCC----C-----CccChhhHHHHhhcCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 001047 979 SGWKEFLRISNVIHETRALDIN----T-----QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 1046 (1174)
Q Consensus 979 ~~~~~f~~~~~VL~~lgyl~~~----~-----~~vt~~Gr~a~~i~~~~eLllte~l~~g~~~~L~p~~laA~~s~~ 1046 (1174)
.-...-.++++-|.+.|||... + ..+|++|+.+++-.. + ...-+...++.+|++++++.+...+
T Consensus 79 ~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~L 151 (161)
T 3e6m_A 79 MEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEIS--P--LINDFHAELVGNVDPDKLQTCIEVL 151 (161)
T ss_dssp CCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHH--H--HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3344556889999999999642 1 268999998876432 1 2333455678899999998887765
No 493
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=31.48 E-value=27 Score=39.47 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=19.2
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.+..++.|.+ ++..|.||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5566778865 566899999999654
No 494
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=31.46 E-value=1.7e+02 Score=29.84 Aligned_cols=75 Identities=8% Similarity=-0.047 Sum_probs=47.4
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
.+.++||.++++.-+...++.+...+. .....+..+|||..........
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~------------------------------~~~~~~~~~~g~~~~~~~~~~~- 144 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGK------------------------------NHDFSAGLIIGGKDLKHEAERI- 144 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTT------------------------------TSSCCEEEECCC--CHHHHHHH-
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhC------------------------------CCCeeEEEEECCCCHHHHHHhC-
Confidence 356799999999999888877764321 1112578889988765443322
Q ss_pred HHhcCCceEEEechh-----hhh--cCCcCCceEEEe
Q 001047 520 LFQRGLVKVVFATET-----LAA--GINMPARTAVLS 549 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~t-----la~--GIDiP~v~vVI~ 549 (1174)
+..+|+|+|.- +.. .+++..+.+||.
T Consensus 145 ----~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 145 ----NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp ----TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred ----CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 45789999962 222 356677766665
No 495
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=31.39 E-value=26 Score=36.55 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=18.5
Q ss_pred cCCcEEEEccCCcchHHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+..+.+.++.|||||+++-...
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45678899999999999876543
No 496
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=31.35 E-value=23 Score=37.40 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=15.8
Q ss_pred cEEEEccCCcchHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~ 194 (1174)
.+.|.|+.|||||+++-..
T Consensus 24 iI~I~G~~GSGKST~a~~L 42 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKI 42 (252)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5788999999999987643
No 497
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=31.14 E-value=46 Score=35.13 Aligned_cols=36 Identities=28% Similarity=0.233 Sum_probs=25.2
Q ss_pred CcEEEEc-cCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 175 SSVVVSA-PTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 175 ~~vlv~a-pTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
+.++|.+ .||+|||++....+.....+|.++.+.=|
T Consensus 22 k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKP 58 (242)
T 3qxc_A 22 HMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKP 58 (242)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEee
Confidence 4555554 59999999887655555567888887644
No 498
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=31.11 E-value=24 Score=39.30 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=15.7
Q ss_pred CcEEEEccCCcchHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~ 193 (1174)
.-.+++||+|+|||.+...
T Consensus 24 ~~~~i~G~NGsGKS~lleA 42 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDA 42 (339)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3568999999999998764
No 499
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=31.09 E-value=28 Score=36.88 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=24.4
Q ss_pred CcEEE-EccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 175 SSVVV-SAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 175 ~~vlv-~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
+.+.| ....|.|||+++...+......|.+|+++
T Consensus 7 ~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 41 (257)
T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV 41 (257)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence 33444 46779999998876665555678888887
No 500
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=31.03 E-value=25 Score=37.06 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=0.0
Q ss_pred EEEEccCCcchHHHHHHHH
Q 001047 177 VVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~i 195 (1174)
+.+.+|+|||||+++-...
T Consensus 12 i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 12 VAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Done!