Query 001047
Match_columns 1174
No_of_seqs 683 out of 4005
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 08:18:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001047.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001047hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bmfa2 c.37.1.14 (A:178-482) 100.0 4.9E-32 3.5E-36 305.5 18.6 274 171-583 6-293 (305)
2 d1veca_ c.37.1.19 (A:) DEAD bo 99.9 2E-27 1.4E-31 251.1 20.9 181 137-323 3-197 (206)
3 d2j0sa1 c.37.1.19 (A:22-243) P 99.9 1.1E-27 7.9E-32 255.2 17.8 173 138-316 18-202 (222)
4 d2g9na1 c.37.1.19 (A:21-238) I 99.9 5.4E-27 3.9E-31 249.6 19.8 181 137-323 12-206 (218)
5 d1t6na_ c.37.1.19 (A:) Spliceo 99.9 4.4E-27 3.2E-31 248.6 18.6 181 138-324 2-198 (207)
6 d1hv8a1 c.37.1.19 (A:3-210) Pu 99.9 2.2E-26 1.6E-30 243.6 18.7 180 138-323 5-196 (208)
7 d1qdea_ c.37.1.19 (A:) Initiat 99.9 2.3E-26 1.6E-30 243.8 18.7 184 136-325 9-204 (212)
8 d2p6ra3 c.37.1.19 (A:1-202) He 99.9 3.5E-26 2.5E-30 241.3 18.1 169 151-325 17-193 (202)
9 d2p6ra4 c.37.1.19 (A:203-403) 99.9 6.7E-26 4.9E-30 237.6 14.5 168 431-606 31-200 (201)
10 d1s2ma1 c.37.1.19 (A:46-251) P 99.9 4.5E-25 3.2E-29 233.3 18.7 181 138-324 2-195 (206)
11 d1wrba1 c.37.1.19 (A:164-401) 99.9 8.5E-25 6.2E-29 235.8 20.3 180 137-322 21-226 (238)
12 d1q0ua_ c.37.1.19 (A:) Probabl 99.9 2.3E-24 1.6E-28 228.6 17.7 181 138-324 2-199 (209)
13 d1gkub1 c.37.1.16 (B:1-250) He 99.9 6.1E-22 4.5E-26 213.9 16.8 157 159-325 43-228 (237)
14 d1oywa2 c.37.1.19 (A:1-206) Re 99.9 4.2E-22 3.1E-26 210.4 12.4 166 149-326 14-198 (206)
15 d1wp9a1 c.37.1.19 (A:1-200) pu 99.9 3.8E-21 2.8E-25 201.8 19.4 163 158-327 8-180 (200)
16 d1hv8a2 c.37.1.19 (A:211-365) 99.8 3.5E-20 2.5E-24 185.9 17.5 121 429-593 16-136 (155)
17 d1oywa3 c.37.1.19 (A:207-406) 99.8 1.7E-20 1.2E-24 195.5 15.2 118 432-593 21-138 (200)
18 d1fuka_ c.37.1.19 (A:) Initiat 99.8 2E-20 1.5E-24 188.7 13.7 121 429-593 14-135 (162)
19 d2j0sa2 c.37.1.19 (A:244-411) 99.8 5.5E-20 4E-24 186.5 13.5 111 439-593 32-142 (168)
20 d1s2ma2 c.37.1.19 (A:252-422) 99.8 1.4E-19 1E-23 184.5 14.7 114 436-593 27-140 (171)
21 d1c4oa2 c.37.1.19 (A:410-583) 99.8 1.9E-19 1.4E-23 180.8 14.8 114 440-593 30-143 (174)
22 d1t5ia_ c.37.1.19 (A:) Spliceo 99.8 2.4E-19 1.8E-23 181.9 13.4 112 438-593 24-135 (168)
23 d1t5la2 c.37.1.19 (A:415-595) 99.8 4.5E-19 3.2E-23 181.0 14.4 107 440-591 30-141 (181)
24 d2rb4a1 c.37.1.19 (A:307-474) 99.8 8.2E-19 5.9E-23 177.8 14.4 120 430-593 20-146 (168)
25 d2eyqa3 c.37.1.19 (A:546-778) 99.7 1.1E-17 7.9E-22 176.5 17.3 158 147-321 43-219 (233)
26 d2fz4a1 c.37.1.19 (A:24-229) D 99.7 8E-18 5.9E-22 176.9 16.0 138 157-314 68-205 (206)
27 d1gm5a3 c.37.1.19 (A:286-549) 99.7 8.5E-18 6.2E-22 180.6 15.0 159 147-322 71-248 (264)
28 d1rifa_ c.37.1.23 (A:) DNA hel 99.7 1.1E-17 8.2E-22 184.0 14.0 148 157-317 111-265 (282)
29 d1yksa1 c.37.1.14 (A:185-324) 99.7 6E-18 4.4E-22 165.6 9.8 135 171-315 4-140 (140)
30 d1jr6a_ c.37.1.14 (A:) HCV hel 99.7 7.8E-18 5.7E-22 163.8 9.3 104 440-593 34-137 (138)
31 d1a1va1 c.37.1.14 (A:190-325) 99.7 5E-17 3.7E-21 158.9 12.2 127 174-314 8-136 (136)
32 d1wp9a2 c.37.1.19 (A:201-486) 99.6 2.3E-15 1.7E-19 166.4 13.5 127 430-593 149-276 (286)
33 d2fwra1 c.37.1.19 (A:257-456) 99.5 2.4E-14 1.7E-18 149.3 9.1 107 437-590 89-196 (200)
34 d1a1va2 c.37.1.14 (A:326-624) 99.5 1.3E-14 9.2E-19 154.8 6.1 105 441-590 36-153 (299)
35 d1gm5a4 c.37.1.19 (A:550-755) 99.4 2.1E-14 1.5E-18 148.3 4.7 82 501-592 66-148 (206)
36 d2eyqa5 c.37.1.19 (A:779-989) 99.4 9E-13 6.5E-17 134.5 13.3 111 440-592 30-141 (211)
37 d1gkub2 c.37.1.16 (B:251-498) 99.4 8.4E-15 6.1E-19 158.1 -3.6 99 439-591 23-126 (248)
38 d1yksa2 c.37.1.14 (A:325-623) 99.1 5.5E-11 4E-15 129.4 11.2 109 441-590 36-155 (299)
39 d1z63a1 c.37.1.19 (A:432-661) 99.1 5.1E-10 3.7E-14 118.5 15.1 155 159-326 12-176 (230)
40 d1z3ix2 c.37.1.19 (X:92-389) R 99.1 9.7E-10 7.1E-14 121.1 17.1 145 159-315 55-231 (298)
41 d1z3ix1 c.37.1.19 (X:390-735) 98.9 5.1E-09 3.7E-13 117.0 16.4 120 430-591 107-229 (346)
42 d1z5za1 c.37.1.19 (A:663-906) 98.8 9.1E-09 6.6E-13 109.7 11.7 122 428-591 73-196 (244)
43 d1tf5a4 c.37.1.19 (A:396-570) 98.4 9.8E-07 7.1E-11 86.4 12.2 120 427-593 21-148 (175)
44 d1tf5a3 c.37.1.19 (A:1-226,A:3 98.1 6.4E-06 4.6E-10 85.6 12.9 133 151-286 72-213 (273)
45 d1w36d1 c.37.1.19 (D:2-360) Ex 98.0 8.5E-06 6.2E-10 90.7 10.2 144 159-311 148-295 (359)
46 d1nkta3 c.37.1.19 (A:-15-225,A 97.9 3.6E-05 2.6E-09 80.2 12.0 133 151-286 89-230 (288)
47 d1nkta4 c.37.1.19 (A:397-615) 97.4 0.00061 4.5E-08 67.4 13.1 120 426-593 20-192 (219)
48 d1uaaa1 c.37.1.19 (A:2-307) DE 97.1 0.00024 1.8E-08 76.7 7.4 85 159-257 1-89 (306)
49 d1pjra1 c.37.1.19 (A:1-318) DE 96.8 0.001 7.6E-08 72.1 8.8 85 159-258 11-99 (318)
50 d1t5la1 c.37.1.19 (A:2-414) Nu 96.4 0.0026 1.9E-07 71.0 8.8 79 155-236 7-90 (413)
51 d1a5ta2 c.37.1.20 (A:1-207) de 96.0 0.0056 4.1E-07 61.9 7.9 136 159-313 2-147 (207)
52 d1ls1a2 c.37.1.10 (A:89-295) G 95.9 0.008 5.8E-07 60.4 8.6 122 176-316 12-136 (207)
53 d2eyqa5 c.37.1.19 (A:779-989) 95.8 0.0083 6.1E-07 59.9 8.0 82 193-286 22-114 (211)
54 g1qhh.1 c.37.1.19 (A:,B:,C:,D: 95.6 0.0089 6.5E-07 70.7 9.0 83 159-256 11-97 (623)
55 d1okkd2 c.37.1.10 (D:97-303) G 95.6 0.04 2.9E-06 55.1 12.2 133 174-325 6-149 (207)
56 d2qy9a2 c.37.1.10 (A:285-495) 95.2 0.054 3.9E-06 54.2 11.8 121 177-316 12-141 (211)
57 d1l8qa2 c.37.1.20 (A:77-289) C 95.2 0.037 2.7E-06 55.8 10.6 74 176-287 38-111 (213)
58 d1vmaa2 c.37.1.10 (A:82-294) G 95.0 0.061 4.4E-06 53.9 11.3 120 176-315 13-142 (213)
59 d2gnoa2 c.37.1.20 (A:11-208) g 94.5 0.064 4.6E-06 53.3 10.1 111 164-314 2-119 (198)
60 d1sxje2 c.37.1.20 (E:4-255) Re 94.2 0.01 7.4E-07 61.4 3.4 39 272-311 130-168 (252)
61 d1g6oa_ c.37.1.11 (A:) Hexamer 93.9 0.029 2.1E-06 60.3 6.4 52 162-214 153-205 (323)
62 d2b8ta1 c.37.1.24 (A:11-149) T 93.8 0.1 7.6E-06 48.4 9.4 89 177-287 5-93 (139)
63 d1xx6a1 c.37.1.24 (A:2-142) Th 93.8 0.03 2.2E-06 52.4 5.5 88 174-287 7-94 (141)
64 d1j8yf2 c.37.1.10 (F:87-297) G 93.8 0.19 1.4E-05 50.0 12.0 121 176-315 14-139 (211)
65 d1njfa_ c.37.1.20 (A:) delta p 93.8 0.21 1.5E-05 50.8 12.7 39 272-311 114-152 (239)
66 d1xbta1 c.37.1.24 (A:18-150) T 93.4 0.12 8.4E-06 47.7 8.8 39 174-212 2-40 (133)
67 d1gm5a3 c.37.1.19 (A:286-549) 93.3 0.3 2.2E-05 50.3 12.8 80 440-549 131-211 (264)
68 d1c4oa1 c.37.1.19 (A:2-409) Nu 92.7 0.091 6.6E-06 58.1 8.2 75 159-236 8-87 (408)
69 d1sxjb2 c.37.1.20 (B:7-230) Re 92.6 0.13 9.7E-06 51.6 8.7 42 272-314 100-141 (224)
70 d2eyqa3 c.37.1.19 (A:546-778) 91.5 0.74 5.4E-05 46.3 12.9 82 439-550 102-184 (233)
71 d1sxjc2 c.37.1.20 (C:12-238) R 91.4 0.12 8.8E-06 52.0 6.8 40 271-311 97-136 (227)
72 d1ye8a1 c.37.1.11 (A:1-178) Hy 91.4 0.083 6.1E-06 50.8 5.2 52 272-324 98-149 (178)
73 d1iqpa2 c.37.1.20 (A:2-232) Re 89.9 0.57 4.2E-05 46.9 10.4 21 175-195 46-66 (231)
74 d1p9ra_ c.37.1.11 (A:) Extrace 89.2 0.2 1.5E-05 55.2 6.6 44 157-201 139-184 (401)
75 d1sxja2 c.37.1.20 (A:295-547) 88.5 0.36 2.6E-05 49.1 7.6 21 175-195 53-73 (253)
76 d1tf7a2 c.37.1.11 (A:256-497) 88.0 0.2 1.4E-05 50.8 5.1 43 168-210 15-62 (242)
77 d2i3ba1 c.37.1.11 (A:1-189) Ca 87.8 0.19 1.4E-05 48.0 4.6 31 175-205 2-32 (189)
78 d1e9ra_ c.37.1.11 (A:) Bacteri 86.5 0.28 2E-05 54.5 5.6 42 173-214 49-90 (433)
79 d1g5ta_ c.37.1.11 (A:) ATP:cor 85.4 0.94 6.8E-05 42.4 7.8 133 176-315 4-138 (157)
80 d1ofha_ c.37.1.20 (A:) HslU {H 84.1 0.3 2.2E-05 51.7 4.2 21 173-193 48-68 (309)
81 d1jbka_ c.37.1.20 (A:) ClpB, A 83.3 3 0.00022 40.3 10.8 103 175-283 44-186 (195)
82 d1g41a_ c.37.1.20 (A:) HslU {H 83.0 0.22 1.6E-05 55.6 2.5 21 173-193 48-68 (443)
83 d1c4oa2 c.37.1.19 (A:410-583) 82.3 2 0.00015 40.8 9.0 77 194-284 23-110 (174)
84 d1cr2a_ c.37.1.11 (A:) Gene 4 82.2 0.56 4.1E-05 48.4 5.3 40 171-210 32-72 (277)
85 d1kaga_ c.37.1.2 (A:) Shikimat 81.8 0.38 2.8E-05 44.7 3.4 22 174-195 2-23 (169)
86 d1r6bx2 c.37.1.20 (X:169-436) 80.8 4.9 0.00036 40.8 12.0 113 166-284 29-183 (268)
87 d1um8a_ c.37.1.20 (A:) ClpX {H 79.3 0.47 3.4E-05 51.3 3.5 19 175-193 69-87 (364)
88 d1zp6a1 c.37.1.25 (A:6-181) Hy 78.8 0.4 2.9E-05 45.3 2.5 21 173-193 3-23 (176)
89 d1np6a_ c.37.1.10 (A:) Molybdo 78.6 0.89 6.5E-05 42.4 5.0 35 176-210 4-38 (170)
90 d1u94a1 c.37.1.11 (A:6-268) Re 77.7 0.99 7.2E-05 46.3 5.3 50 167-216 41-96 (263)
91 d1pzna2 c.37.1.11 (A:96-349) D 77.1 0.69 5E-05 46.6 3.9 44 167-210 24-78 (254)
92 d1khta_ c.37.1.1 (A:) Adenylat 77.0 0.9 6.6E-05 43.0 4.5 35 174-208 1-35 (190)
93 d1fnna2 c.37.1.20 (A:1-276) CD 76.8 1.1 8.2E-05 45.3 5.5 52 175-227 44-98 (276)
94 d1byia_ c.37.1.10 (A:) Dethiob 76.6 0.9 6.6E-05 44.5 4.5 36 175-210 2-38 (224)
95 d1y63a_ c.37.1.1 (A:) Probable 76.3 0.67 4.9E-05 43.6 3.3 22 174-195 5-26 (174)
96 d1w36b1 c.37.1.19 (B:1-485) Ex 76.2 1.6 0.00012 48.3 7.1 53 175-227 17-81 (485)
97 d2fnaa2 c.37.1.20 (A:1-283) Ar 76.2 4.8 0.00035 40.2 10.4 22 173-194 28-49 (283)
98 d1rkba_ c.37.1.1 (A:) Adenylat 76.1 0.63 4.6E-05 43.7 3.0 21 175-195 5-25 (173)
99 d1tf7a1 c.37.1.11 (A:14-255) C 75.9 0.88 6.4E-05 45.1 4.2 38 173-210 25-63 (242)
100 d1ly1a_ c.37.1.1 (A:) Polynucl 75.5 0.54 3.9E-05 43.4 2.3 17 176-192 4-20 (152)
101 d1lw7a2 c.37.1.1 (A:220-411) T 75.2 0.46 3.4E-05 45.2 1.7 20 175-194 8-27 (192)
102 d1szpa2 c.37.1.11 (A:145-395) 75.1 0.82 6E-05 45.6 3.8 43 167-209 22-75 (251)
103 d2bdta1 c.37.1.25 (A:1-176) Hy 74.5 0.72 5.2E-05 43.1 2.9 20 175-194 3-22 (176)
104 d1in4a2 c.37.1.20 (A:17-254) H 74.3 0.87 6.3E-05 45.6 3.7 19 175-193 36-54 (238)
105 d1n0wa_ c.37.1.11 (A:) DNA rep 73.5 0.93 6.8E-05 44.0 3.6 33 167-199 11-48 (242)
106 d1gvnb_ c.37.1.21 (B:) Plasmid 72.6 1.1 7.8E-05 45.6 4.0 18 176-193 34-51 (273)
107 d1v5wa_ c.37.1.11 (A:) Meiotic 72.6 1.1 8E-05 44.9 4.0 54 173-226 36-95 (258)
108 d1qhxa_ c.37.1.3 (A:) Chloramp 72.1 0.92 6.7E-05 42.6 3.1 22 173-194 2-23 (178)
109 d1ixsb2 c.37.1.20 (B:4-242) Ho 70.8 1.2 8.6E-05 44.6 3.7 19 175-193 36-54 (239)
110 d1viaa_ c.37.1.2 (A:) Shikimat 70.6 1.1 8E-05 42.0 3.2 21 175-195 1-21 (161)
111 d1m8pa3 c.37.1.15 (A:391-573) 69.8 0.94 6.9E-05 42.6 2.5 23 172-194 4-26 (183)
112 d1rz3a_ c.37.1.6 (A:) Hypothet 69.7 2.1 0.00015 40.8 5.2 21 175-195 22-43 (198)
113 d1nksa_ c.37.1.1 (A:) Adenylat 69.6 1.7 0.00013 41.1 4.5 34 177-210 4-37 (194)
114 d1ny5a2 c.37.1.20 (A:138-384) 69.0 2.6 0.00019 42.4 6.0 23 171-193 20-42 (247)
115 d1t5la2 c.37.1.19 (A:415-595) 68.8 7.9 0.00058 36.7 9.2 78 194-285 23-111 (181)
116 d1xp8a1 c.37.1.11 (A:15-282) R 68.7 2.2 0.00016 43.7 5.2 51 167-217 44-100 (268)
117 d2i1qa2 c.37.1.11 (A:65-322) D 67.4 0.87 6.4E-05 45.4 1.8 29 173-201 33-61 (258)
118 d1lv7a_ c.37.1.20 (A:) AAA dom 67.1 2.4 0.00017 43.0 5.2 34 174-210 45-78 (256)
119 d1gm5a4 c.37.1.19 (A:550-755) 66.9 0.56 4.1E-05 46.3 0.1 82 193-286 20-121 (206)
120 d1mo6a1 c.37.1.11 (A:1-269) Re 66.8 2.5 0.00018 43.1 5.3 52 167-218 47-104 (269)
121 d1zaka1 c.37.1.1 (A:3-127,A:15 66.4 1.4 0.0001 42.3 3.0 20 176-195 5-24 (189)
122 d1knqa_ c.37.1.17 (A:) Glucona 66.2 1.1 7.9E-05 42.0 2.1 20 175-194 7-26 (171)
123 d1ak2a1 c.37.1.1 (A:14-146,A:1 66.1 1.6 0.00011 41.9 3.3 22 174-195 3-24 (190)
124 d1e6ca_ c.37.1.2 (A:) Shikimat 65.8 1.8 0.00013 40.7 3.7 22 175-196 3-24 (170)
125 d1d2na_ c.37.1.20 (A:) Hexamer 65.7 1.5 0.00011 44.5 3.1 19 175-193 41-59 (246)
126 d1sxjd2 c.37.1.20 (D:26-262) R 65.6 2.5 0.00018 41.8 4.9 21 175-195 34-54 (237)
127 d1x6va3 c.37.1.4 (A:34-228) Ad 65.6 1.9 0.00014 41.2 3.8 22 174-195 19-40 (195)
128 d1zina1 c.37.1.1 (A:1-125,A:16 65.3 1.5 0.00011 41.6 2.9 20 176-195 2-21 (182)
129 d3adka_ c.37.1.1 (A:) Adenylat 65.2 2 0.00014 41.4 3.9 25 171-195 5-29 (194)
130 d1qvra2 c.37.1.20 (A:149-535) 65.0 12 0.0009 39.8 10.8 53 164-216 31-92 (387)
131 d1ixza_ c.37.1.20 (A:) AAA dom 64.9 5.2 0.00038 40.1 7.3 35 175-212 43-77 (247)
132 d1e4va1 c.37.1.1 (A:1-121,A:15 63.1 1.7 0.00012 41.2 2.9 20 176-195 2-21 (179)
133 d1znwa1 c.37.1.1 (A:20-201) Gu 63.0 1.9 0.00014 41.1 3.2 20 174-193 2-21 (182)
134 d1e32a2 c.37.1.20 (A:201-458) 62.9 2.4 0.00017 43.0 4.2 33 175-210 39-71 (258)
135 d1s3ga1 c.37.1.1 (A:1-125,A:16 62.8 1.8 0.00013 41.3 2.9 21 176-196 2-22 (182)
136 d1xjca_ c.37.1.10 (A:) Molybdo 62.6 3.5 0.00026 38.3 5.1 33 177-209 4-36 (165)
137 d2cdna1 c.37.1.1 (A:1-181) Ade 62.3 1.8 0.00013 41.1 2.9 20 176-195 2-21 (181)
138 d1ukza_ c.37.1.1 (A:) Uridylat 61.4 1.9 0.00014 41.5 2.9 20 176-195 10-29 (196)
139 d1gkya_ c.37.1.1 (A:) Guanylat 61.3 2.3 0.00017 40.7 3.5 19 175-193 2-20 (186)
140 d1qf9a_ c.37.1.1 (A:) UMP/CMP 61.2 1.9 0.00014 41.4 2.9 21 176-196 8-28 (194)
141 d1s96a_ c.37.1.1 (A:) Guanylat 60.1 2.3 0.00017 41.5 3.3 21 173-193 1-21 (205)
142 d1yj5a2 c.37.1.1 (A:351-522) 5 58.9 1.9 0.00014 40.9 2.3 37 276-314 67-103 (172)
143 d1teva_ c.37.1.1 (A:) UMP/CMP 58.6 2.7 0.0002 40.2 3.5 20 176-195 3-22 (194)
144 d1bifa1 c.37.1.7 (A:37-249) 6- 58.4 4.2 0.00031 39.0 5.0 32 177-208 5-36 (213)
145 d2ak3a1 c.37.1.1 (A:0-124,A:16 58.3 2.3 0.00017 40.8 2.9 20 176-195 8-27 (189)
146 d1lvga_ c.37.1.1 (A:) Guanylat 57.2 3.1 0.00023 39.9 3.7 18 176-193 2-19 (190)
147 d1nlfa_ c.37.1.11 (A:) Hexamer 56.9 3.3 0.00024 41.9 4.1 57 168-225 23-89 (274)
148 d1svma_ c.37.1.20 (A:) Papillo 56.4 4.3 0.00031 43.3 4.9 40 166-208 142-185 (362)
149 d2iyva1 c.37.1.2 (A:2-166) Shi 56.0 3.3 0.00024 38.5 3.5 20 176-195 3-22 (165)
150 d1akya1 c.37.1.1 (A:3-130,A:16 56.0 2.7 0.0002 39.8 2.9 21 176-196 4-24 (180)
151 d1r7ra3 c.37.1.20 (A:471-735) 55.3 3.6 0.00026 41.8 3.9 34 174-210 41-74 (265)
152 d1g8pa_ c.37.1.20 (A:) ATPase 54.8 2.1 0.00016 45.1 2.1 21 173-193 27-47 (333)
153 d1nn5a_ c.37.1.1 (A:) Thymidyl 52.8 6.6 0.00048 38.2 5.3 40 173-212 2-42 (209)
154 d1uj2a_ c.37.1.6 (A:) Uridine- 50.9 3 0.00021 40.7 2.3 17 177-193 5-21 (213)
155 d1ihua1 c.37.1.10 (A:1-296) Ar 50.3 6.5 0.00047 40.0 5.1 35 175-209 9-43 (296)
156 d1kgda_ c.37.1.1 (A:) Guanylat 49.9 4.3 0.00031 38.5 3.2 18 175-192 4-21 (178)
157 d1w5sa2 c.37.1.20 (A:7-293) CD 49.6 2.4 0.00018 42.9 1.4 19 177-195 49-67 (287)
158 d1jr6a_ c.37.1.14 (A:) HCV hel 49.3 17 0.0012 32.6 7.2 50 200-251 33-86 (138)
159 d4tmka_ c.37.1.1 (A:) Thymidyl 48.8 6.9 0.0005 37.8 4.7 35 173-207 1-35 (210)
160 d1ckea_ c.37.1.1 (A:) CMP kina 48.4 4.8 0.00035 39.0 3.5 22 177-198 6-27 (225)
161 d1yrba1 c.37.1.10 (A:1-244) AT 47.5 7.2 0.00053 38.2 4.7 31 177-208 3-33 (244)
162 d2pmka1 c.37.1.12 (A:467-707) 46.0 4.5 0.00033 40.4 2.8 21 172-192 27-47 (241)
163 d1qvra3 c.37.1.20 (A:536-850) 45.6 5.6 0.00041 41.5 3.6 20 176-195 55-74 (315)
164 d1ihua2 c.37.1.10 (A:308-586) 45.0 8.7 0.00063 38.7 5.0 34 175-208 21-54 (279)
165 d1r6bx3 c.37.1.20 (X:437-751) 45.0 4.8 0.00035 42.0 2.9 18 176-193 54-71 (315)
166 d1xpua3 c.37.1.11 (A:129-417) 44.4 8.4 0.00061 39.3 4.6 35 164-198 30-67 (289)
167 d1q3ta_ c.37.1.1 (A:) CMP kina 44.3 6.1 0.00044 38.3 3.5 22 177-198 6-27 (223)
168 d2hyda1 c.37.1.12 (A:324-578) 43.8 4.9 0.00036 40.5 2.6 20 172-191 42-61 (255)
169 d1jj7a_ c.37.1.12 (A:) Peptide 43.7 5.7 0.00041 39.9 3.1 22 172-193 38-59 (251)
170 d1hv8a1 c.37.1.19 (A:3-210) Pu 43.2 43 0.0031 31.8 9.8 77 438-549 69-151 (208)
171 d1sgwa_ c.37.1.12 (A:) Putativ 43.0 5.3 0.00039 38.6 2.7 21 173-193 26-46 (200)
172 d1fuka_ c.37.1.19 (A:) Initiat 42.7 28 0.0021 31.8 7.9 67 201-281 26-103 (162)
173 d1gsia_ c.37.1.1 (A:) Thymidyl 41.6 11 0.00082 35.8 5.0 35 177-211 3-38 (208)
174 d1bg2a_ c.37.1.9 (A:) Kinesin 41.4 8.1 0.00059 40.3 4.0 25 167-191 67-93 (323)
175 d3b60a1 c.37.1.12 (A:329-581) 41.3 5.8 0.00042 39.9 2.7 21 172-192 39-59 (253)
176 d1l2ta_ c.37.1.12 (A:) MJ0796 40.6 5.9 0.00043 39.2 2.6 20 172-191 29-48 (230)
177 d1r0wa_ c.37.1.12 (A:) Cystic 39.6 7.4 0.00054 39.8 3.2 20 173-192 61-80 (281)
178 d1mv5a_ c.37.1.12 (A:) Multidr 39.5 5.6 0.00041 39.7 2.2 20 173-192 27-46 (242)
179 d1lnwa_ a.4.5.28 (A:) MexR rep 38.0 20 0.0015 31.9 5.8 61 982-1046 65-134 (141)
180 d1a7ja_ c.37.1.6 (A:) Phosphor 37.9 7.9 0.00058 39.6 3.1 17 177-193 7-23 (288)
181 d1m7ga_ c.37.1.4 (A:) Adenosin 37.8 12 0.0009 36.0 4.5 20 174-193 24-43 (208)
182 d1odfa_ c.37.1.6 (A:) Hypothet 37.3 13 0.00092 38.0 4.6 15 179-193 32-46 (286)
183 d1oywa3 c.37.1.19 (A:207-406) 36.2 30 0.0022 32.9 7.1 64 201-278 29-103 (200)
184 d1g2912 c.37.1.12 (1:1-240) Ma 35.8 9.6 0.0007 37.8 3.3 43 507-549 168-214 (240)
185 d3dhwc1 c.37.1.12 (C:1-240) Me 35.6 7.8 0.00057 38.5 2.5 20 172-191 29-48 (240)
186 d1v8ka_ c.37.1.9 (A:) Kinesin 35.5 11 0.00082 39.8 4.1 25 167-191 105-131 (362)
187 d1s2ma2 c.37.1.19 (A:252-422) 35.2 42 0.003 30.7 7.9 66 201-280 31-107 (171)
188 d1nija1 c.37.1.10 (A:2-223) Hy 35.2 10 0.00073 37.2 3.3 32 177-210 6-37 (222)
189 d1g3qa_ c.37.1.10 (A:) Cell di 35.0 14 0.00099 35.8 4.4 31 178-208 7-37 (237)
190 d2awna2 c.37.1.12 (A:4-235) Ma 34.8 10 0.00074 37.4 3.3 19 173-191 25-43 (232)
191 d1knxa2 c.91.1.2 (A:133-309) H 34.7 8.9 0.00065 36.2 2.7 21 173-193 14-34 (177)
192 d1goja_ c.37.1.9 (A:) Kinesin 34.7 11 0.0008 39.7 3.8 25 167-191 71-97 (354)
193 d1w44a_ c.37.1.11 (A:) NTPase 34.5 16 0.0012 37.8 5.0 19 176-194 125-143 (321)
194 d2vp4a1 c.37.1.1 (A:12-208) De 34.1 7.9 0.00057 36.7 2.3 18 176-193 11-28 (197)
195 d3d31a2 c.37.1.12 (A:1-229) Su 33.7 9.9 0.00072 37.5 2.9 21 172-192 24-44 (229)
196 d1s3ja_ a.4.5.28 (A:) Putative 33.3 43 0.0031 29.5 7.4 63 980-1046 62-133 (143)
197 d1sdma_ c.37.1.9 (A:) Kinesin 32.8 12 0.00085 39.7 3.6 25 167-191 66-92 (364)
198 d1ji0a_ c.37.1.12 (A:) Branche 32.5 9.5 0.00069 37.9 2.6 21 172-192 30-50 (240)
199 d2ncda_ c.37.1.9 (A:) Kinesin 32.3 12 0.00087 39.7 3.6 26 166-191 115-142 (368)
200 d2j0sa2 c.37.1.19 (A:244-411) 32.3 95 0.0069 28.1 9.9 86 178-279 12-108 (168)
201 d2zfia1 c.37.1.9 (A:4-352) Kin 32.2 14 0.001 38.9 4.0 25 167-191 78-104 (349)
202 d1cp2a_ c.37.1.10 (A:) Nitroge 32.0 16 0.0012 36.4 4.4 33 176-208 3-35 (269)
203 d1nyta1 c.2.1.7 (A:102-271) Sh 31.8 35 0.0026 31.2 6.7 70 173-250 17-86 (170)
204 d1x88a1 c.37.1.9 (A:18-362) Ki 31.7 13 0.00098 38.8 3.9 25 167-191 72-98 (345)
205 d1kkma_ c.91.1.2 (A:) HPr kina 31.6 11 0.00081 35.4 2.8 21 173-193 13-33 (176)
206 d2jdid3 c.37.1.11 (D:82-357) C 31.4 23 0.0017 35.7 5.4 33 166-198 57-92 (276)
207 d1qhla_ c.37.1.12 (A:) Cell di 30.5 4.4 0.00032 38.3 -0.4 17 177-193 27-43 (222)
208 d1uf9a_ c.37.1.1 (A:) Dephosph 30.4 11 0.00083 35.4 2.7 15 179-193 8-22 (191)
209 d1v43a3 c.37.1.12 (A:7-245) Hy 30.4 13 0.00097 36.7 3.3 20 173-192 31-50 (239)
210 d1ko7a2 c.91.1.2 (A:130-298) H 30.0 12 0.00088 34.9 2.7 21 173-193 14-34 (169)
211 d1hyqa_ c.37.1.10 (A:) Cell di 30.0 22 0.0016 34.1 5.0 31 178-208 6-36 (232)
212 g1xew.1 c.37.1.12 (X:,Y:) Smc 29.9 10 0.00076 39.0 2.5 17 176-192 28-44 (329)
213 d2p67a1 c.37.1.10 (A:1-327) LA 29.8 21 0.0015 37.0 4.9 30 176-205 56-85 (327)
214 d1oxxk2 c.37.1.12 (K:1-242) Gl 29.8 10 0.00074 37.7 2.2 21 172-192 29-49 (242)
215 d1yb2a1 c.66.1.13 (A:6-255) Hy 29.2 1.1E+02 0.0083 29.7 10.4 111 175-321 86-196 (250)
216 d1sq5a_ c.37.1.6 (A:) Pantothe 29.1 19 0.0014 37.1 4.3 17 177-193 83-99 (308)
217 d2b8ea1 c.108.1.7 (A:416-434,A 29.0 76 0.0056 27.8 8.1 60 427-525 24-83 (135)
218 d2afhe1 c.37.1.10 (E:1-289) Ni 29.0 20 0.0014 36.2 4.5 33 176-208 4-36 (289)
219 d1jjva_ c.37.1.1 (A:) Dephosph 28.9 13 0.00092 35.7 2.8 16 178-193 6-21 (205)
220 d1vhta_ c.37.1.1 (A:) Dephosph 28.9 13 0.00092 35.8 2.8 17 177-193 6-22 (208)
221 d1lnwa_ a.4.5.28 (A:) MexR rep 28.2 69 0.005 28.0 7.8 68 1069-1138 9-76 (141)
222 d1ku9a_ a.4.5.36 (A:) DNA-bind 28.2 32 0.0023 30.6 5.5 64 1078-1144 10-75 (151)
223 d2fh5b1 c.37.1.8 (B:63-269) Si 28.2 12 0.00085 35.7 2.4 17 175-191 1-17 (207)
224 d1w1wa_ c.37.1.12 (A:) Smc hea 28.1 13 0.00091 39.7 2.9 20 175-194 26-45 (427)
225 d1b0ua_ c.37.1.12 (A:) ATP-bin 27.9 13 0.00092 37.4 2.6 21 172-192 26-46 (258)
226 d1z5za1 c.37.1.19 (A:663-906) 27.5 58 0.0042 31.5 7.8 70 182-252 65-146 (244)
227 d2qm8a1 c.37.1.10 (A:5-327) Me 26.4 23 0.0017 36.6 4.5 29 177-205 54-82 (323)
228 d1p5zb_ c.37.1.1 (B:) Deoxycyt 26.2 12 0.00089 36.4 2.1 20 174-193 2-21 (241)
229 g1f2t.1 c.37.1.12 (A:,B:) Rad5 26.1 15 0.0011 36.6 2.9 17 176-192 25-41 (292)
230 d1hv8a2 c.37.1.19 (A:211-365) 25.6 74 0.0054 28.3 7.7 65 201-279 27-102 (155)
231 d1p77a1 c.2.1.7 (A:102-272) Sh 25.4 67 0.0049 29.3 7.4 72 173-252 17-88 (171)
232 d1rp3a2 a.4.13.2 (A:164-234) S 25.2 47 0.0034 25.3 5.2 46 1098-1143 22-68 (71)
233 d1t5ia_ c.37.1.19 (A:) Spliceo 25.0 50 0.0037 30.1 6.3 67 201-281 26-103 (168)
234 d1l7vc_ c.37.1.12 (C:) ABC tra 24.9 14 0.001 36.4 2.2 20 172-191 23-42 (231)
235 d1htwa_ c.37.1.18 (A:) Hypothe 24.7 17 0.0012 33.4 2.6 38 176-216 35-72 (158)
236 d1f9va_ c.37.1.9 (A:) Kinesin 24.6 15 0.0011 38.3 2.7 26 167-192 74-101 (342)
237 d2rb4a1 c.37.1.19 (A:307-474) 24.3 64 0.0047 29.3 7.0 65 201-279 31-106 (168)
238 d1khda1 a.46.2.1 (A:12-80) Ant 24.3 36 0.0026 26.2 4.2 23 1026-1048 23-46 (69)
239 d1g6ha_ c.37.1.12 (A:) MJ1267 24.0 16 0.0012 36.4 2.6 43 507-549 179-224 (254)
240 g1ii8.1 c.37.1.12 (A:,B:) Rad5 23.8 18 0.0013 36.7 3.1 17 176-192 25-41 (369)
241 d2onka1 c.37.1.12 (A:1-240) Mo 23.5 19 0.0014 35.5 2.9 18 175-192 25-42 (240)
242 d2p6ra2 a.289.1.2 (A:489-686) 23.0 46 0.0033 31.5 5.6 41 1101-1141 74-114 (198)
243 d2eyqa2 c.37.1.19 (A:349-465) 22.8 55 0.004 28.0 5.7 36 431-466 24-59 (117)
244 d1yksa2 c.37.1.14 (A:325-623) 22.8 50 0.0037 33.4 6.3 49 201-251 35-90 (299)
245 d1jgsa_ a.4.5.28 (A:) Multiple 22.5 63 0.0046 28.2 6.3 73 970-1046 51-133 (138)
246 d2hr3a1 a.4.5.28 (A:2-146) Pro 22.4 88 0.0064 27.3 7.4 72 1065-1138 1-75 (145)
247 d1lkxa_ c.37.1.9 (A:) Myosin S 22.1 26 0.0019 40.3 4.2 31 165-195 74-107 (684)
248 d2p6ra4 c.37.1.19 (A:203-403) 22.0 49 0.0036 31.2 5.7 58 195-252 33-129 (201)
249 d2j0sa1 c.37.1.19 (A:22-243) P 21.7 1.6E+02 0.012 27.8 9.7 76 440-549 84-165 (222)
250 d1d0xa2 c.37.1.9 (A:2-33,A:80- 21.5 27 0.002 40.3 4.2 31 165-195 113-146 (712)
251 d1vpla_ c.37.1.12 (A:) Putativ 21.0 21 0.0015 35.2 2.6 43 507-549 162-207 (238)
252 d1u0la2 c.37.1.8 (A:69-293) Pr 20.7 28 0.0021 33.8 3.5 28 163-190 84-111 (225)
253 d1ry6a_ c.37.1.9 (A:) Kinesin 20.7 19 0.0014 37.3 2.4 19 173-191 82-102 (330)
254 d1tmka_ c.37.1.1 (A:) Thymidyl 20.5 48 0.0035 31.6 5.3 37 173-211 2-38 (214)
255 d1tuea_ c.37.1.20 (A:) Replica 20.5 29 0.0021 33.1 3.4 27 167-193 42-72 (205)
256 d1br2a2 c.37.1.9 (A:80-789) My 20.2 30 0.0022 39.9 4.2 33 163-195 77-112 (710)
257 d2mysa2 c.37.1.9 (A:4-33,A:80- 20.2 29 0.0021 40.6 4.1 32 164-195 110-144 (794)
No 1
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=99.97 E-value=4.9e-32 Score=305.46 Aligned_cols=274 Identities=14% Similarity=0.091 Sum_probs=181.9
Q ss_pred HHcCCcEEEEccCCcchHHHHHHHHHH-HHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEE
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEAAAVA-TVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIM 249 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~~il~-~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~ 249 (1174)
+.+|++++|.||||||||++|+.+++. .+.++.+++|++||++|++|++++|++..... .....+........|+++
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~Ptr~La~q~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~ 83 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRY--QTPAIRAEHTGREIVDLM 83 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHTTTSCCBC--CC--------CCCSEEEE
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEccHHHHHHHHHHHHhcCCcce--eeeEEeecccCccccccC
Confidence 457899999999999999999877765 45578899999999999999999988743322 222223334567899999
Q ss_pred cHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHH--CCCCccEEEEccccCChHHHHHHHhcc
Q 001047 250 TTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY--CPKEVQIICLSATVANADELAGWIGQI 327 (1174)
Q Consensus 250 Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~--l~~~~qiI~LSATl~n~~~~~~~l~~~ 327 (1174)
|++.|..++.. ...+.++++||+||||++.++.+. ...++.. .....+++++|||+++...
T Consensus 84 t~~~l~~~~~~-------~~~~~~~~~vViDE~H~~~~~~~~--~~~~l~~~~~~~~~~~v~~SAT~~~~~~-------- 146 (305)
T d2bmfa2 84 CHATFTMRLLS-------PIRVPNYNLIIMDEAHFTDPASIA--ARGYISTRVEMGEAAGIFMTATPPGSRD-------- 146 (305)
T ss_dssp EHHHHHHHHTS-------SSCCCCCSEEEEESTTCCSHHHHH--HHHHHHHHHHHTSCEEEEECSSCTTCCC--------
T ss_pred CcHHHHHHHhc-------CccccceeEEEeeeeeecchhhHH--HHHHHHHhhccccceEEEeecCCCccee--------
Confidence 99999887754 456789999999999998754321 2222221 2356899999999863210
Q ss_pred cCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCccccc
Q 001047 328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTS 407 (1174)
Q Consensus 328 ~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1174)
....+..|....... +....
T Consensus 147 -------~~~~~~~~~~~~~~~--------------~~~~~--------------------------------------- 166 (305)
T d2bmfa2 147 -------PFPQSNAPIMDEERE--------------IPERS--------------------------------------- 166 (305)
T ss_dssp -------SSCCCSSCEEEEECC--------------CCCSC---------------------------------------
T ss_pred -------eecccCCcceEEEEe--------------ccHHH---------------------------------------
Confidence 000111111100000 00000
Q ss_pred ccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCC
Q 001047 408 FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYP 487 (1174)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~ 487 (1174)
. . .. +. ......+++||||++++.|+.++..|...++
T Consensus 167 ------~-----------~-~~---~~-~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~--------------------- 203 (305)
T d2bmfa2 167 ------W-----------N-SG---HE-WVTDFKGKTVWFVPSIKAGNDIAACLRKNGK--------------------- 203 (305)
T ss_dssp ------C-----------S-SC---CH-HHHSSCSCEEEECSCHHHHHHHHHHHHHHTC---------------------
T ss_pred ------H-----------H-HH---HH-HHHhhCCCEEEEeccHHHHHHHHHHHHhCCC---------------------
Confidence 0 0 00 00 1123456899999999999999999986654
Q ss_pred ccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEeccc-----ccCCC-----
Q 001047 488 DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS-----KRTAS----- 557 (1174)
Q Consensus 488 ~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~-----k~~~~----- 557 (1174)
.+..+||++.+..+ ..|++|..+++|||+++++|+|++...+|..+.. .+++.
T Consensus 204 -------------~~~~l~~~~~~~~~----~~~~~~~~~~lvaT~~~~~G~~~~~~~Vi~~~~~~~~~~~~~~~~~~~~ 266 (305)
T d2bmfa2 204 -------------KVIQLSRKTFDSEY----IKTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVIL 266 (305)
T ss_dssp -------------CCEECCTTCHHHHG----GGGGTSCCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEE
T ss_pred -------------CEEEeCCcChHHHH----hhhhccchhhhhhhHHHHhcCCCCccEEEEcCCceeeeEecCCCCceEE
Confidence 57889999876544 4688999999999999999999976554422110 11111
Q ss_pred -CccccCHHHHHHhhcccCCCCCCCcc
Q 001047 558 -GRIQLTSNELFQMAGRAGRRGIDNRG 583 (1174)
Q Consensus 558 -~~~p~s~~~y~Qr~GRAGR~G~d~~G 583 (1174)
...|.|..+|+||+|||||.|....+
T Consensus 267 ~~~~~~s~~~~~Qr~GR~GR~~~~~~~ 293 (305)
T d2bmfa2 267 AGPMPVTHSSAAQRRGRVGRNPKNEND 293 (305)
T ss_dssp EEEEECCHHHHHHHHTTSSCSSSCCCE
T ss_pred eccccCCHHHHhhhhcCcCcCCCCceE
Confidence 23688999999999999999943333
No 2
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.95 E-value=2e-27 Score=251.09 Aligned_cols=181 Identities=19% Similarity=0.203 Sum_probs=155.7
Q ss_pred HHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q 001047 137 NEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---NQRRIFYTTPLKA 213 (1174)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~---~g~rvlvl~Ptra 213 (1174)
.+|.++++.+...+.+.+.....|+|+|++|||.+++|+|++++||||||||++|++|+++.+. ++.++++++||++
T Consensus 3 ~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil~pt~e 82 (206)
T d1veca_ 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhcccccccCcceEEEeecch
Confidence 4577888888888889888777899999999999999999999999999999999999998875 4558999999999
Q ss_pred HHHHHHHHHHHHhC---CCeEEEEeCCCC-------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccc
Q 001047 214 LSNQKFREFRETFG---DNNVGLLTGDSA-------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283 (1174)
Q Consensus 214 La~Q~~~~l~~~~g---~~~v~lltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH 283 (1174)
|+.|+++.+..... ...+....|+.. ....++|+|+||++|..++.. ....+.++.+||+||||
T Consensus 83 l~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~------~~~~~~~l~~lVlDEaD 156 (206)
T d1veca_ 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK------GVAKVDHVQMIVLDEAD 156 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT------TCSCCTTCCEEEEETHH
T ss_pred hhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccc------hhccccccceEEEeccc
Confidence 99999999987543 245666666654 346899999999999999876 45568899999999999
Q ss_pred ccccCCcHHHHHHHHHHCCCCccEEEEccccCCh-HHHHHH
Q 001047 284 YLSDISRGTVWEEIIIYCPKEVQIICLSATVANA-DELAGW 323 (1174)
Q Consensus 284 ~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~-~~~~~~ 323 (1174)
.|.+.+|+..++.++..+++++|++++|||+++. .++++.
T Consensus 157 ~ll~~~f~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l~~~ 197 (206)
T d1veca_ 157 KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNS 197 (206)
T ss_dssp HHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHH
T ss_pred cccccchHHHHHHHHHhCCCCCEEEEEEecCCHHHHHHHHH
Confidence 9999999999999999999999999999999742 444443
No 3
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.95 E-value=1.1e-27 Score=255.16 Aligned_cols=173 Identities=14% Similarity=0.180 Sum_probs=153.5
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHH
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPLKAL 214 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~PtraL 214 (1174)
+|.++++.+...+.+++.....|+|+|.+|||.+++|+|+++.||||||||++|++|+++.+.. +.+++|++||++|
T Consensus 18 sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~~~~~~~~lil~PtreL 97 (222)
T d2j0sa1 18 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTREL 97 (222)
T ss_dssp SGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHH
T ss_pred CHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhcccccccccccccCceeEEecchHHH
Confidence 5777888888888899888888999999999999999999999999999999999999998753 4589999999999
Q ss_pred HHHHHHHHHHHhC--CCeEEEEeCCCCCC-------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccc
Q 001047 215 SNQKFREFRETFG--DNNVGLLTGDSAIN-------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285 (1174)
Q Consensus 215 a~Q~~~~l~~~~g--~~~v~lltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l 285 (1174)
+.|+++.+..... ..++..+.|+...+ .+++|+|+||++|.+++.. ....+.+++++|+||||+|
T Consensus 98 a~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~------~~~~~~~l~~lVlDEaD~l 171 (222)
T d2j0sa1 98 AVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR------RSLRTRAIKMLVLDEADEM 171 (222)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT------TSSCCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccc------cccccccceeeeecchhHh
Confidence 9999999988532 35778888877533 4789999999999998876 4557889999999999999
Q ss_pred ccCCcHHHHHHHHHHCCCCccEEEEccccCC
Q 001047 286 SDISRGTVWEEIIIYCPKEVQIICLSATVAN 316 (1174)
Q Consensus 286 ~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n 316 (1174)
.+.+|...+..++..+|++.|++++|||+++
T Consensus 172 l~~~f~~~i~~I~~~l~~~~Q~ilfSAT~~~ 202 (222)
T d2j0sa1 172 LNKGFKEQIYDVYRYLPPATQVVLISATLPH 202 (222)
T ss_dssp TSTTTHHHHHHHHTTSCTTCEEEEEESCCCH
T ss_pred hhcCcHHHHHHHHHhCCCCCEEEEEEEeCCH
Confidence 9999999999999999999999999999974
No 4
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.94 E-value=5.4e-27 Score=249.57 Aligned_cols=181 Identities=15% Similarity=0.133 Sum_probs=153.2
Q ss_pred HHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q 001047 137 NEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---NQRRIFYTTPLKA 213 (1174)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~---~g~rvlvl~Ptra 213 (1174)
.+|.++++++...+.+.+.....|+|+|.+|||.++.|+|++++||||||||++|++|+++.+. .+.+++|++||++
T Consensus 12 ~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~~~~~~~alil~Pt~e 91 (218)
T d2g9na1 12 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRE 91 (218)
T ss_dssp CCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHH
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheecccccCccEEEEcccch
Confidence 4677788888888888887777899999999999999999999999999999999999999875 4568999999999
Q ss_pred HHHHHHHHHHHHhCC--CeEEEEeCCCCC--------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccc
Q 001047 214 LSNQKFREFRETFGD--NNVGLLTGDSAI--------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283 (1174)
Q Consensus 214 La~Q~~~~l~~~~g~--~~v~lltGd~~~--------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH 283 (1174)
|+.|+++.+...... ..+..+.|+... ...++|+|+||++|.+++.+ ....+.++.+||+||||
T Consensus 92 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~------~~~~~~~l~~lVlDEaD 165 (218)
T d2g9na1 92 LAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR------RYLSPKYIKMFVLDEAD 165 (218)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHT------TSSCSTTCCEEEEESHH
T ss_pred hhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhc------CCcccccceEEEeeecc
Confidence 999999999986543 245555553322 23689999999999999986 45578899999999999
Q ss_pred ccccCCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHHH
Q 001047 284 YLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGW 323 (1174)
Q Consensus 284 ~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~~ 323 (1174)
+|.+.+|...+..++..++++.|++++|||+++ ...+++.
T Consensus 166 ~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~~~~ 206 (218)
T d2g9na1 166 EMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKK 206 (218)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHH
T ss_pred hhhcCchHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHH
Confidence 999999999999999999999999999999974 2444443
No 5
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.94 E-value=4.4e-27 Score=248.62 Aligned_cols=181 Identities=17% Similarity=0.177 Sum_probs=155.5
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHH
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPLKAL 214 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~PtraL 214 (1174)
.|.+|++.+...+.+.+.....|+|+|.+|||.+++|+|++++||||||||++|++|+++.+.. +.+++|++|||+|
T Consensus 2 ~F~dl~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~PtreL 81 (207)
T d1t6na_ 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTREL 81 (207)
T ss_dssp CSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHH
T ss_pred CccccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeecccCCCceEEEEeccchh
Confidence 3667888888888888887778999999999999999999999999999999999999988764 4589999999999
Q ss_pred HHHHHHHHHHHh---CCCeEEEEeCCCCCC--------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccc
Q 001047 215 SNQKFREFRETF---GDNNVGLLTGDSAIN--------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283 (1174)
Q Consensus 215 a~Q~~~~l~~~~---g~~~v~lltGd~~~~--------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH 283 (1174)
+.|+++.+.... +...+++++|+...+ ..++|+|+||++|.+++.+ ....++++.++|+||||
T Consensus 82 ~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~------~~~~l~~l~~lVlDEaD 155 (207)
T d1t6na_ 82 AFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN------KSLNLKHIKHFILDECD 155 (207)
T ss_dssp HHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT------TSSCCTTCCEEEEESHH
T ss_pred hHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccC------Cceeccccceeehhhhh
Confidence 999999998854 334678888877533 4689999999999999976 35568999999999999
Q ss_pred ccccC-CcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHHHH
Q 001047 284 YLSDI-SRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWI 324 (1174)
Q Consensus 284 ~l~d~-~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~~l 324 (1174)
.|.+. ++...++.++..++++.|++++|||+++ .+++++.+
T Consensus 156 ~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~~ 198 (207)
T d1t6na_ 156 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKF 198 (207)
T ss_dssp HHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTT
T ss_pred hhhhcCCcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHHHH
Confidence 99975 7888899999999999999999999985 36666554
No 6
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.94 E-value=2.2e-26 Score=243.61 Aligned_cols=180 Identities=23% Similarity=0.235 Sum_probs=153.6
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCC-cEEEEccCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHH
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGS-SVVVSAPTSSGKTLIAEAAAVATVA--NQRRIFYTTPLKAL 214 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~-~vlv~apTGsGKTlv~~~~il~~l~--~g~rvlvl~PtraL 214 (1174)
+|.++++++...+.+.+.+...|+|+|.++|+.+++|+ |++++||||+|||++|.+|+++... .+.+++|++||++|
T Consensus 5 sf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~~~~~~lil~pt~~l 84 (208)
T d1hv8a1 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTREL 84 (208)
T ss_dssp CGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHH
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeecccccccccccCcceEEEeecccc
Confidence 46667778778888888777789999999999999885 9999999999999999999988654 45699999999999
Q ss_pred HHHHHHHHHHHhCC--CeEEEEeCCCCCC------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 215 SNQKFREFRETFGD--NNVGLLTGDSAIN------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 215 a~Q~~~~l~~~~g~--~~v~lltGd~~~~------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
+.|+++.+...... ..+....|+.... .+++|+|+||++|.+++.+ +...++++++||+||||+|.
T Consensus 85 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~IlV~TP~~l~~~l~~------~~~~~~~l~~lViDEad~l~ 158 (208)
T d1hv8a1 85 AIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINR------GTLNLKNVKYFILDEADEML 158 (208)
T ss_dssp HHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHT------TCSCTTSCCEEEEETHHHHH
T ss_pred chhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcCCCCEEEEChHHHHHHHHc------CCCCcccCcEEEEEChHHhh
Confidence 99999999987543 4688888876543 3689999999999999876 34568899999999999999
Q ss_pred cCCcHHHHHHHHHHCCCCccEEEEccccCCh-HHHHHH
Q 001047 287 DISRGTVWEEIIIYCPKEVQIICLSATVANA-DELAGW 323 (1174)
Q Consensus 287 d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~-~~~~~~ 323 (1174)
+.+++..+..++..+++++|++++|||+++. .+++..
T Consensus 159 ~~~~~~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~~~~ 196 (208)
T d1hv8a1 159 NMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKK 196 (208)
T ss_dssp TTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHH
T ss_pred cCCChHHHHHHHHhCCCCCeEEEEEccCCHHHHHHHHH
Confidence 9999999999999999999999999999852 444433
No 7
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.94 E-value=2.3e-26 Score=243.77 Aligned_cols=184 Identities=17% Similarity=0.145 Sum_probs=156.3
Q ss_pred HHHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh---cCCeEEEEcccH
Q 001047 136 CNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---NQRRIFYTTPLK 212 (1174)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~---~g~rvlvl~Ptr 212 (1174)
..+|.++++++...+.+++.+...|+|+|.+||+.++.|+|++++||||||||++|++|+++.+. .+.+++|++||+
T Consensus 9 ~~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~~~~~~~~lil~pt~ 88 (212)
T d1qdea_ 9 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 88 (212)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred ccChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhccCCCcceEEEcccH
Confidence 45678888888889999998888999999999999999999999999999999999999999875 356899999999
Q ss_pred HHHHHHHHHHHHHhCC--CeEEEEeCCCCC------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccc
Q 001047 213 ALSNQKFREFRETFGD--NNVGLLTGDSAI------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 213 aLa~Q~~~~l~~~~g~--~~v~lltGd~~~------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~ 284 (1174)
+|+.|++..+...... ..+....|+... .++++|+|+||+++.+++.. ....+.+++++|+||||.
T Consensus 89 el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~------~~~~l~~l~~lVlDEad~ 162 (212)
T d1qdea_ 89 ELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR------RRFRTDKIKMFILDEADE 162 (212)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHT------TSSCCTTCCEEEEETHHH
T ss_pred HHhhhhhhhhcccccccccceeeEeeccchhHHHHHhcCCcEEEECCCcccccccc------CceecCcceEEeehhhhh
Confidence 9999999999875432 244444444332 24789999999999999876 455788999999999999
Q ss_pred cccCCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHHHHh
Q 001047 285 LSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWIG 325 (1174)
Q Consensus 285 l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~~l~ 325 (1174)
|.+.+|+..+..++..+++.+|++++|||+++ ...+++++.
T Consensus 163 lld~~f~~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~~~~l 204 (212)
T d1qdea_ 163 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFM 204 (212)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHC
T ss_pred hcccchHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHHC
Confidence 99999999999999999999999999999985 366666653
No 8
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.93 E-value=3.5e-26 Score=241.35 Aligned_cols=169 Identities=28% Similarity=0.439 Sum_probs=143.7
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCC-C
Q 001047 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGD-N 229 (1174)
Q Consensus 151 ~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~-~ 229 (1174)
.+++.+.-+|+|+|.+|++.+++|+++++++|||||||+++.++++..+.++++++|++|+++|++|++++++++++. .
T Consensus 17 ~l~~~g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~~~~~vl~l~P~~~L~~q~~~~~~~~~~~~~ 96 (202)
T d2p6ra3 17 ILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGL 96 (202)
T ss_dssp HHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTC
T ss_pred HHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhhccCcceeecccHHHHHHHHHHHHHHhhccc
Confidence 344444447999999999999999999999999999999999999999999999999999999999999999987663 4
Q ss_pred eEEEEeCCCCCC----CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHH---HCC
Q 001047 230 NVGLLTGDSAIN----REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIII---YCP 302 (1174)
Q Consensus 230 ~v~lltGd~~~~----~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~---~l~ 302 (1174)
.++..+|+.... ..+.|+++||..+..++.. ....+.++++||+||||.+.+..++..++.++. ..+
T Consensus 97 ~v~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~------~~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~ 170 (202)
T d2p6ra3 97 RIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRN------RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN 170 (202)
T ss_dssp CEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHT------TCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHC
T ss_pred cceeeccCcccccccccccceeeeccHHHHHHHhc------cchhhhhhhhccccHHHHhcccccchHHHHHHHHHHhcC
Confidence 677788776543 3688999999999988875 344677899999999999998888887776654 456
Q ss_pred CCccEEEEccccCChHHHHHHHh
Q 001047 303 KEVQIICLSATVANADELAGWIG 325 (1174)
Q Consensus 303 ~~~qiI~LSATl~n~~~~~~~l~ 325 (1174)
+++|+|+||||++|++++++||+
T Consensus 171 ~~~~~l~lSATl~n~~~~~~~l~ 193 (202)
T d2p6ra3 171 KALRVIGLSATAPNVTEIAEWLD 193 (202)
T ss_dssp TTCEEEEEECCCTTHHHHHHHTT
T ss_pred CCCcEEEEcCCCCcHHHHHHHcC
Confidence 78999999999999999999996
No 9
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.93 E-value=6.7e-26 Score=237.56 Aligned_cols=168 Identities=29% Similarity=0.380 Sum_probs=130.9
Q ss_pred HHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcC--CCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCC
Q 001047 431 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCN--LLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 508 (1174)
Q Consensus 431 ~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~--~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsg 508 (1174)
+++..+... +.|+||||+||+.|+.+|..|.... ...... ....+...........+.+++.+||++||||
T Consensus 31 ~l~~~~i~~-~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~------~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~ 103 (201)
T d2p6ra4 31 ELVEECVAE-NGGVLVFESTRRGAEKTAVKLSAITAKYVENEG------LEKAILEENEGEMSRKLAECVRKGAAFHHAG 103 (201)
T ss_dssp HHHHHHHHT-TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSS------HHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred HHHHHHHHc-CCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhH------HHHHHHHhhhhhhhHHHHHHHhccHHHHHHH
Confidence 344444443 4799999999999999998887421 111110 0111222223333446778899999999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEE
Q 001047 509 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 588 (1174)
Q Consensus 509 l~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill 588 (1174)
|++.+|..++++|++|.++|||||+++++|||+|++++||.++.+|+| +..|.+..+|+||+|||||.|.|..|.++++
T Consensus 104 l~~~~r~~ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~-~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~ 182 (201)
T d2p6ra4 104 LLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDG-YSKRIKVSEYKQMAGRAGRPGMDERGEAIII 182 (201)
T ss_dssp SCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESS-SEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred hhhhhHHHHHHHHhCCCceEEEechHHHhhcCCCCceEEEecceeccC-CcCCCCHHHHHHHhcccCCCCCCCeeEEEEE
Confidence 999999999999999999999999999999999999999999998876 5568999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhCCC
Q 001047 589 QTPYEGAEECCKLLFAGV 606 (1174)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~ 606 (1174)
+.+.+....+.+++.+++
T Consensus 183 ~~~~~~~~~~k~~~~~~p 200 (201)
T d2p6ra4 183 VGKRDREIAVKRYIFGEP 200 (201)
T ss_dssp CCGGGHHHHHHTTTSSCC
T ss_pred eCCCChHHHHHHHhccCC
Confidence 887654444556666555
No 10
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.92 E-value=4.5e-25 Score=233.26 Aligned_cols=181 Identities=18% Similarity=0.181 Sum_probs=158.0
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh---cCCeEEEEcccHHH
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA---NQRRIFYTTPLKAL 214 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~---~g~rvlvl~PtraL 214 (1174)
+|.+|++++...+.+++...-.|+|+|.+|||.+++|+|+++.||||||||++|++|+++.+. .+.++++++|++++
T Consensus 2 sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~~~~~~~~~~~~~~~~~ 81 (206)
T d1s2ma1 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTREL 81 (206)
T ss_dssp CGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred ChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhccccccccccccccccceeeccchhh
Confidence 577889999999999998878899999999999999999999999999999999999998874 35589999999999
Q ss_pred HHHHHHHHHHHh--CCCeEEEEeCCCCC-------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccc
Q 001047 215 SNQKFREFRETF--GDNNVGLLTGDSAI-------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYL 285 (1174)
Q Consensus 215 a~Q~~~~l~~~~--g~~~v~lltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l 285 (1174)
+.|.+..+.... .+.++...+|+... ...++|+|+||++|.+++.. ....+.++.++|+||||.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~------~~~~l~~l~~lV~DEaD~l 155 (206)
T d1s2ma1 82 ALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR------KVADLSDCSLFIMDEADKM 155 (206)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT------TCSCCTTCCEEEEESHHHH
T ss_pred hhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCccccccccc------ceeecccceEEEeechhhh
Confidence 999988887743 34578888887753 46899999999999999986 4557899999999999999
Q ss_pred ccCCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHHHH
Q 001047 286 SDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWI 324 (1174)
Q Consensus 286 ~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~~l 324 (1174)
.+.+|+..++.++..+++.+|++++|||+++ ..+++.++
T Consensus 156 ~~~~f~~~v~~I~~~l~~~~Q~il~SATl~~~v~~~~~~~ 195 (206)
T d1s2ma1 156 LSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKH 195 (206)
T ss_dssp SSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHH
Confidence 9999999999999999999999999999973 34555444
No 11
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=99.92 E-value=8.5e-25 Score=235.80 Aligned_cols=180 Identities=19% Similarity=0.183 Sum_probs=153.5
Q ss_pred HHHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc------------CCe
Q 001047 137 NEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN------------QRR 204 (1174)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~------------g~r 204 (1174)
.+|.++++++...+.+.+.....|+|+|..||+.+++|+|++++||||||||++|++|+++.+.. +.+
T Consensus 21 ~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~ 100 (238)
T d1wrba1 21 ENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPK 100 (238)
T ss_dssp CSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCS
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCce
Confidence 46677889999999999888888999999999999999999999999999999999999998742 457
Q ss_pred EEEEcccHHHHHHHHHHHHHHhCC--CeEEEEeCCCCCC-------CCCcEEEEcHHHHHHHHhcccccccCCCCCCcee
Q 001047 205 IFYTTPLKALSNQKFREFRETFGD--NNVGLLTGDSAIN-------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVD 275 (1174)
Q Consensus 205 vlvl~PtraLa~Q~~~~l~~~~g~--~~v~lltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~ 275 (1174)
++|++||++|+.|+++.+...... .++..+.|+.... ..++|+|+||++|.+++.. ....+.++.
T Consensus 101 alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~------~~~~l~~v~ 174 (238)
T d1wrba1 101 CLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK------NKISLEFCK 174 (238)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT------TSBCCTTCC
T ss_pred EEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHcc------Cceeccccc
Confidence 999999999999999998875433 5688888876532 4689999999999998876 355688999
Q ss_pred EEEEccccccccCCcHHHHHHHHHHCC----CCccEEEEccccCC-hHHHHH
Q 001047 276 VIVLDEVHYLSDISRGTVWEEIIIYCP----KEVQIICLSATVAN-ADELAG 322 (1174)
Q Consensus 276 lVIiDEaH~l~d~~~g~~~e~ii~~l~----~~~qiI~LSATl~n-~~~~~~ 322 (1174)
++|+||||.|.+.+|+..++.++..+. .+.|++++|||+++ .+.++.
T Consensus 175 ~lViDEaD~ll~~~f~~~i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l~~ 226 (238)
T d1wrba1 175 YIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAA 226 (238)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHH
T ss_pred eeeeehhhhhhhhccHHHHHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHHHH
Confidence 999999999999999999999988653 25799999999974 344443
No 12
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.91 E-value=2.3e-24 Score=228.57 Aligned_cols=181 Identities=19% Similarity=0.268 Sum_probs=151.6
Q ss_pred HHHhccCCcCChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHH
Q 001047 138 EVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN---QRRIFYTTPLKAL 214 (1174)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~---g~rvlvl~PtraL 214 (1174)
.|.++++.+...+.+++.....|+|+|.+||+.+++|+|++++||||||||++|++|+++.+.. ...+++++|++.+
T Consensus 2 ~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~~~~~~~~~~~~~~~~~ 81 (209)
T d1q0ua_ 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTREL 81 (209)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred ccccCCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeeccccccccccccccccccccch
Confidence 4677888888888888876667999999999999999999999999999999999999988753 4578999999999
Q ss_pred HHHHHHHHHHHhCC------CeEEEEeCCCC-------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcc
Q 001047 215 SNQKFREFRETFGD------NNVGLLTGDSA-------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDE 281 (1174)
Q Consensus 215 a~Q~~~~l~~~~g~------~~v~lltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDE 281 (1174)
+.|.+..+...... ..+..+.|... .+.+++|+|+||+++.+++.+ ....+.++.++|+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~------~~~~~~~l~~lViDE 155 (209)
T d1q0ua_ 82 ATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE------QALDVHTAHILVVDE 155 (209)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT------TCCCGGGCCEEEECS
T ss_pred hHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhh------hccccccceEEEEee
Confidence 99998888764332 23444555432 345789999999999999876 455678999999999
Q ss_pred ccccccCCcHHHHHHHHHHCCCCccEEEEccccCC-hHHHHHHH
Q 001047 282 VHYLSDISRGTVWEEIIIYCPKEVQIICLSATVAN-ADELAGWI 324 (1174)
Q Consensus 282 aH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n-~~~~~~~l 324 (1174)
||++.+.+|+..++.++..+++++|++++|||+++ ...+++.+
T Consensus 156 ad~ll~~~f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~~~ 199 (209)
T d1q0ua_ 156 ADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKY 199 (209)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHH
T ss_pred cccccccccHHHHHHHHHHCCCCCEEEEEEccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999974 35555443
No 13
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.86 E-value=6.1e-22 Score=213.88 Aligned_cols=157 Identities=20% Similarity=0.193 Sum_probs=120.5
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCC------eEE
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDN------NVG 232 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~------~v~ 232 (1174)
+|+++|+.+++.++.|+|++++||||+|||++++++++....++++++|++||++|++|+++++++++... .++
T Consensus 43 ~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~ 122 (237)
T d1gkub1 43 EPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIG 122 (237)
T ss_dssp SCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEE
T ss_pred CCCHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 79999999999999999999999999999999999999888899999999999999999999999875432 234
Q ss_pred EEeCCCCC---------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHH-----
Q 001047 233 LLTGDSAI---------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII----- 298 (1174)
Q Consensus 233 lltGd~~~---------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii----- 298 (1174)
...++... ..+++|+|+||+.|.+. ...+.++++|||||||.+.+..++......+
T Consensus 123 ~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~----------~~~~~~~~~vVvDE~d~~l~~~~~~~~~~~~~g~~~ 192 (237)
T d1gkub1 123 YYHGRIPKREKENFMQNLRNFKIVITTTQFLSKH----------YRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHY 192 (237)
T ss_dssp ECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHC----------STTSCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEE
T ss_pred eeecccchhhhhhhhccccccceeccChHHHHHh----------hhhcCCCCEEEEEChhhhhhcccchhHHHHhcCChH
Confidence 44444321 23578999999987653 2346789999999999998655442211111
Q ss_pred ------HHCCCCccEEEEccccCCh---HHHHHHHh
Q 001047 299 ------IYCPKEVQIICLSATVANA---DELAGWIG 325 (1174)
Q Consensus 299 ------~~l~~~~qiI~LSATl~n~---~~~~~~l~ 325 (1174)
...+...|++++|||+++. .-+.++++
T Consensus 193 ~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l~r~ll~ 228 (237)
T d1gkub1 193 DLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN 228 (237)
T ss_dssp ETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC
T ss_pred HHHHHHhhCCCCCeEEEEeCCCCcccHHHHHHHHhC
Confidence 1124567899999999763 33445554
No 14
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.86 E-value=4.2e-22 Score=210.35 Aligned_cols=166 Identities=16% Similarity=0.240 Sum_probs=125.3
Q ss_pred hHHHhhcCCC-CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC
Q 001047 149 VDELASIYDF-RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG 227 (1174)
Q Consensus 149 ~~~l~~~~~~-~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g 227 (1174)
.+.+++.|+| .|+|+|.+|++.+++|+|+++++|||||||++|.+|++. ..++++|++|+++|++|+++++...+.
T Consensus 14 ~~~l~~~fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~---~~~~~~~v~P~~~L~~q~~~~l~~~~~ 90 (206)
T d1oywa2 14 KQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---LNGLTVVVSPLISLMKDQVDQLQANGV 90 (206)
T ss_dssp HHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH---SSSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhh---ccCceEEeccchhhhhhHHHHHHhhcc
Confidence 3456666666 599999999999999999999999999999999998864 578999999999999999999988544
Q ss_pred CCeEEEEeCCCC-----------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHH--
Q 001047 228 DNNVGLLTGDSA-----------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVW-- 294 (1174)
Q Consensus 228 ~~~v~lltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~-- 294 (1174)
. .+...+... ......|+++||+.+...... ......++++||+||||++.++++...+
T Consensus 91 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~------~~~~~~~v~~lviDEaH~~~~~~~~~~~~~ 162 (206)
T d1oywa2 91 A--AACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL------EHLAHWNPVLLAVDEAHCISQWGHDFRPEY 162 (206)
T ss_dssp C--EEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH------HHHTTSCEEEEEESSGGGGCTTSSCCCHHH
T ss_pred c--ccccccccccccchhHHHHHhcCCceEEEEechhhhchhhc------ccchhheeeeeeeeeeeeeeccccchHHHH
Confidence 3 333333221 124688999999987543322 1234568999999999999876443221
Q ss_pred ---HHHHHHCCCCccEEEEccccCCh--HHHHHHHhc
Q 001047 295 ---EEIIIYCPKEVQIICLSATVANA--DELAGWIGQ 326 (1174)
Q Consensus 295 ---e~ii~~l~~~~qiI~LSATl~n~--~~~~~~l~~ 326 (1174)
..+...+ +++|+++||||+++. +++..|++.
T Consensus 163 ~~~~~l~~~~-~~~~ii~lSATl~~~v~~di~~~L~l 198 (206)
T d1oywa2 163 AALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGL 198 (206)
T ss_dssp HGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhC-CCCceEEEEeCCCHHHHHHHHHHcCC
Confidence 2233444 479999999999764 578888864
No 15
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.86 E-value=3.8e-21 Score=201.85 Aligned_cols=163 Identities=23% Similarity=0.280 Sum_probs=129.3
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHHhCC--CeEEEE
Q 001047 158 FRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKFREFRETFGD--NNVGLL 234 (1174)
Q Consensus 158 ~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~~~l~~~~g~--~~v~ll 234 (1174)
++|+++|.++++.+.. +++|+++|||+|||+++.+++...+. .+++++|++|+++|+.|+++++.+.++. ..++..
T Consensus 8 ~~pr~~Q~~~~~~~~~-~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~v~~~ 86 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCKE-TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVAL 86 (200)
T ss_dssp HCCCHHHHHHHHHGGG-SCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEE
T ss_pred CCCCHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcCchHHHHHHHHHHHHhhcccccceeee
Confidence 4799999999998764 67999999999999999988766554 5778999999999999999999998753 457767
Q ss_pred eCCCCCC------CCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEE
Q 001047 235 TGDSAIN------REAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQII 308 (1174)
Q Consensus 235 tGd~~~~------~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI 308 (1174)
+++.... .+.+|+++||+.+.+++.. ....+.++++||+||||++.+......+...+.....+.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~------~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~l 160 (200)
T d1wp9a1 87 TGEKSPEERSKAWARAKVIVATPQTIENDLLA------GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVI 160 (200)
T ss_dssp CSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT------TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEE
T ss_pred ecccchhHHHHhhhcccccccccchhHHHHhh------hhhhccccceEEEEehhhhhcchhHHHHHHHHHhcCCCCcEE
Confidence 6665432 2568999999999988876 345677899999999999987655555554555556678999
Q ss_pred EEccccCC-hHHHHHHHhcc
Q 001047 309 CLSATVAN-ADELAGWIGQI 327 (1174)
Q Consensus 309 ~LSATl~n-~~~~~~~l~~~ 327 (1174)
+||||+++ .+.+.+++...
T Consensus 161 ~~SATp~~~~~~~~~~~~~l 180 (200)
T d1wp9a1 161 GLTASPGSTPEKIMEVINNL 180 (200)
T ss_dssp EEESCSCSSHHHHHHHHHHT
T ss_pred EEEecCCCcHHHHHHHHhcC
Confidence 99999865 46666666543
No 16
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.83 E-value=3.5e-20 Score=185.92 Aligned_cols=121 Identities=18% Similarity=0.333 Sum_probs=110.1
Q ss_pred HHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCC
Q 001047 429 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 508 (1174)
Q Consensus 429 ~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsg 508 (1174)
..+.|..+......++||||++++.|+.++..|...++ .+..+||+
T Consensus 16 K~~~L~~ll~~~~~k~IIF~~s~~~~~~l~~~L~~~g~----------------------------------~~~~~~~~ 61 (155)
T d1hv8a2 16 RFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGF----------------------------------KAGAIHGD 61 (155)
T ss_dssp HHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEEECSS
T ss_pred HHHHHHHHHccCCCCEEEEECchHHHHHHHhhhccccc----------------------------------cccccccc
Confidence 44556666666667999999999999999999987765 68899999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEE
Q 001047 509 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 588 (1174)
Q Consensus 509 l~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill 588 (1174)
+++.+|..+++.|++|..+|||||+++++|||+|++++||+ ++.|.|+..|+||+||+||.| ..|.++++
T Consensus 62 ~~~~~r~~~~~~f~~~~~~ilv~T~~~~~Gid~~~v~~Vi~--------~d~p~~~~~y~qr~GR~gR~g--~~g~~i~~ 131 (155)
T d1hv8a2 62 LSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN--------YHLPQNPESYMHRIGRTGRAG--KKGKAISI 131 (155)
T ss_dssp SCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE--------SSCCSCHHHHHHHSTTTCCSS--SCCEEEEE
T ss_pred chhhhhhhhhhhhhcccceeeeehhHHhhhhhhccCcEEEE--------ecCCCCHHHHHHHHHhcCcCC--CCceEEEE
Confidence 99999999999999999999999999999999999999999 999999999999999999999 78999988
Q ss_pred eCCCC
Q 001047 589 QTPYE 593 (1174)
Q Consensus 589 ~~~~~ 593 (1174)
+++.+
T Consensus 132 ~~~~d 136 (155)
T d1hv8a2 132 INRRE 136 (155)
T ss_dssp ECTTS
T ss_pred EchHH
Confidence 88754
No 17
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.83 E-value=1.7e-20 Score=195.53 Aligned_cols=118 Identities=25% Similarity=0.326 Sum_probs=107.5
Q ss_pred HHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCH
Q 001047 432 TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLP 511 (1174)
Q Consensus 432 ~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~ 511 (1174)
++..+......++||||+|++.|+.++..|...++ .+..+||+|++
T Consensus 21 L~~~l~~~~~~~~IIF~~t~~~~~~l~~~l~~~~~----------------------------------~~~~~h~~~~~ 66 (200)
T d1oywa3 21 LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGI----------------------------------SAAAYHAGLEN 66 (200)
T ss_dssp HHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEEECTTSCH
T ss_pred HHHHHHhcCCCCEEEEEeeehhhHHhhhhhccCCc----------------------------------eeEEecCCCcH
Confidence 34444555667899999999999999999987665 68999999999
Q ss_pred HHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 512 IWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 512 ~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
.+|..+++.|++|.++|||||+++++|||+|++++||+ ++.|.++.+|+||+|||||.| ..|.+++++++
T Consensus 67 ~~r~~~~~~f~~g~~~ilvaTd~~~~GiD~p~v~~VI~--------~~~P~~~~~y~qr~GR~gR~g--~~g~ai~~~~~ 136 (200)
T d1oywa3 67 NVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH--------FDIPRNIESYYQETGRAGRDG--LPAEAMLFYDP 136 (200)
T ss_dssp HHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE--------SSCCSSHHHHHHHHTTSCTTS--SCEEEEEEECH
T ss_pred HHHHHHHHHHhcccceEEEecchhhhccCCCCCCEEEE--------CCCccchHHHHHHhhhhhcCC--CCceEEEecCH
Confidence 99999999999999999999999999999999999999 999999999999999999999 78999999977
Q ss_pred CC
Q 001047 592 YE 593 (1174)
Q Consensus 592 ~~ 593 (1174)
.+
T Consensus 137 ~d 138 (200)
T d1oywa3 137 AD 138 (200)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 18
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.82 E-value=2e-20 Score=188.69 Aligned_cols=121 Identities=21% Similarity=0.288 Sum_probs=104.1
Q ss_pred HHHHHHHH-HhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecC
Q 001047 429 VIDTLWHL-RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 507 (1174)
Q Consensus 429 ~~~~l~~l-~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hs 507 (1174)
..+.|..+ ......++||||+++..|+.++..|...++ .+..+||
T Consensus 14 K~~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~~~----------------------------------~~~~~~~ 59 (162)
T d1fuka_ 14 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKF----------------------------------TVSAIYS 59 (162)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTC----------------------------------CEEEECT
T ss_pred HHHHHHHHHHhCCCCcEEEEEEEEchHHHHHHHHhhcCc----------------------------------eEEEecc
Confidence 34444443 344667999999999999999999987765 6899999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEE
Q 001047 508 GCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL 587 (1174)
Q Consensus 508 gl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~il 587 (1174)
+|++.+|..+++.|+.|.++|||||+++++|+|+|++++||+ ++.|.++..|+||+||+||.| ..|.|+.
T Consensus 60 ~~~~~~r~~~l~~f~~~~~~iLv~Tdv~~rGiDi~~v~~VI~--------~d~P~~~~~yihR~GR~gR~g--~~g~~i~ 129 (162)
T d1fuka_ 60 DLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN--------YDLPANKENYIHRIGRGGRFG--RKGVAIN 129 (162)
T ss_dssp TSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE--------SSCCSSGGGGGGSSCSCC-------CEEEE
T ss_pred CCchhhHHHHHHHHhhcccceeeccccccccccCCCceEEEE--------eccchhHHHHHhhccccccCC--CccEEEE
Confidence 999999999999999999999999999999999999999999 999999999999999999999 7899999
Q ss_pred EeCCCC
Q 001047 588 VQTPYE 593 (1174)
Q Consensus 588 l~~~~~ 593 (1174)
+.++.+
T Consensus 130 ~~~~~d 135 (162)
T d1fuka_ 130 FVTNED 135 (162)
T ss_dssp EEETTT
T ss_pred EcCHHH
Confidence 988754
No 19
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.81 E-value=5.5e-20 Score=186.47 Aligned_cols=111 Identities=19% Similarity=0.321 Sum_probs=103.6
Q ss_pred CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHH
Q 001047 439 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 518 (1174)
Q Consensus 439 ~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~ 518 (1174)
....++||||++++.|+.++..|...++ .+..+||++++.+|..++
T Consensus 32 ~~~~k~iiF~~~~~~~~~~~~~l~~~~~----------------------------------~~~~~~~~~~~~~r~~~~ 77 (168)
T d2j0sa2 32 LTITQAVIFCNTKRKVDWLTEKMREANF----------------------------------TVSSMHGDMPQKERESIM 77 (168)
T ss_dssp HTSSEEEEECSSHHHHHHHHHHHHHTTC----------------------------------CCEEECTTSCHHHHHHHH
T ss_pred CCCCceEEEeeeHHHHHHHHHHhhhccc----------------------------------chhhhhhhhhHHHHHHHH
Confidence 3557899999999999999999987665 688999999999999999
Q ss_pred HHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 519 ~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
+.|++|.++|||||+++++|+|+|++++||+ ++.|.++..|+||+||+||.| ..|.++.++++.+
T Consensus 78 ~~fk~g~~~iLv~Td~~~rGiDi~~v~~VIn--------~d~P~~~~~yihR~GR~gR~g--~~G~~i~~~~~~d 142 (168)
T d2j0sa2 78 KEFRSGASRVLISTDVWARGLDVPQVSLIIN--------YDLPNNRELYIHRIGRSGRYG--RKGVAINFVKNDD 142 (168)
T ss_dssp HHHHHTSSCEEEECGGGSSSCCCTTEEEEEE--------SSCCSSHHHHHHHHTTSSGGG--CCEEEEEEEEGGG
T ss_pred HHHhcCCccEEeccchhcccccccCcceEEE--------ecCCcCHHHHHhhhccccccC--CCcEEEEEECHHH
Confidence 9999999999999999999999999999999 999999999999999999999 7899998887754
No 20
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.80 E-value=1.4e-19 Score=184.48 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=105.3
Q ss_pred HHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHH
Q 001047 436 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKS 515 (1174)
Q Consensus 436 l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~ 515 (1174)
+...+..++||||++++.|+.++..|...|+ .+..+||+|++.+|.
T Consensus 27 l~~~~~~k~iVF~~~~~~~~~l~~~L~~~g~----------------------------------~~~~~h~~~~~~~r~ 72 (171)
T d1s2ma2 27 FSKLQINQAIIFCNSTNRVELLAKKITDLGY----------------------------------SCYYSHARMKQQERN 72 (171)
T ss_dssp HHHSCCSEEEEECSSHHHHHHHHHHHHHHTC----------------------------------CEEEECTTSCHHHHH
T ss_pred HHhCCCCceEEEEeeeehhhHhHHhhhcccc----------------------------------cccccccccchhhhh
Confidence 3445667999999999999999999987665 688899999999999
Q ss_pred HHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 516 FIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 516 ~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
.++..|++|.++|||||+++++|+|+|++++||+ ++.|.++.+|+||+||+||.| ..|.|+.|+++.+
T Consensus 73 ~~~~~f~~~~~~ilv~Td~~~~Gid~~~v~~VI~--------~d~p~~~~~y~qr~GR~gR~g--~~g~~i~~v~~~e 140 (171)
T d1s2ma2 73 KVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN--------FDFPKTAETYLHRIGRSGRFG--HLGLAINLINWND 140 (171)
T ss_dssp HHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE--------SSCCSSHHHHHHHHCBSSCTT--CCEEEEEEECGGG
T ss_pred hhhhhcccCccccccchhHhhhccccceeEEEEe--------cCCcchHHHHHHHhhhcccCC--CccEEEEEeCHHH
Confidence 9999999999999999999999999999999999 999999999999999999999 7899999988754
No 21
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=99.80 E-value=1.9e-19 Score=180.75 Aligned_cols=114 Identities=16% Similarity=0.189 Sum_probs=99.8
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
.+.++||||++++.|+.++..|...|+ .+.++||+|++.+|+.+++
T Consensus 30 ~g~r~lvfc~t~~~~~~l~~~L~~~Gi----------------------------------~a~~~Hg~~~~~eR~~~l~ 75 (174)
T d1c4oa2 30 RGERTLVTVLTVRMAEELTSFLVEHGI----------------------------------RARYLHHELDAFKRQALIR 75 (174)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEEECTTCCHHHHHHHHH
T ss_pred cCCcEEEEEcchhHHHHHHHHHHhcCC----------------------------------ceEEEecccchHHHHHHHH
Confidence 456899999999999999999998887 6899999999999999999
Q ss_pred HHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
.|++|+++|||||+++++|||+|++++||+..... ...+.|...|+||+|||||.| .|.++++.....
T Consensus 76 ~F~~G~~~vLVaT~v~~~GiDip~V~~Vi~~~~~~---~~~~~~~~~~iq~~GR~gR~~---~g~~~~~~~~~~ 143 (174)
T d1c4oa2 76 DLRLGHYDCLVGINLLREGLDIPEVSLVAILDADK---EGFLRSERSLIQTIGRAARNA---RGEVWLYADRVS 143 (174)
T ss_dssp HHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTS---CSGGGSHHHHHHHHGGGTTST---TCEEEEECSSCC
T ss_pred HHHCCCeEEEEeeeeeeeeccCCCCcEEEEecccc---ccccchhHHHHHHhhhhhhcC---CCeeEEeecCCC
Confidence 99999999999999999999999999999932211 225668899999999999986 688888776543
No 22
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.78 E-value=2.4e-19 Score=181.90 Aligned_cols=112 Identities=18% Similarity=0.226 Sum_probs=103.8
Q ss_pred hCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHH
Q 001047 438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 517 (1174)
Q Consensus 438 ~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v 517 (1174)
.....++||||++++.++.+++.|...++ .+.++||+|++.+|..+
T Consensus 24 ~~~~~k~iIF~~~~~~~~~l~~~L~~~~~----------------------------------~~~~ihg~~~~~~r~~~ 69 (168)
T d1t5ia_ 24 VLEFNQVVIFVKSVQRCIALAQLLVEQNF----------------------------------PAIAIHRGMPQEERLSR 69 (168)
T ss_dssp HSCCSSEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEEECTTSCHHHHHHH
T ss_pred hCCCCeEEEEEeeeecchhhhhhhccccc----------------------------------cccccccccchhhhhhh
Confidence 44667999999999999999999987665 68899999999999999
Q ss_pred HHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 518 EELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 518 ~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
++.|++|.++|||||+++++|+|+|.+++||+ ++.|.++..|+||+||+||.| ..|.||.++++.+
T Consensus 70 l~~F~~g~~~iLv~T~~~~~Gid~~~~~~vi~--------~~~p~~~~~yiqr~GR~gR~g--~~g~~i~l~~~~~ 135 (168)
T d1t5ia_ 70 YQQFKDFQRRILVATNLFGRGMDIERVNIAFN--------YDMPEDSDTYLHRVARAGRFG--TKGLAITFVSDEN 135 (168)
T ss_dssp HHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE--------SSCCSSHHHHHHHHHHHTGGG--CCCEEEEEECSHH
T ss_pred hhhhccccceeeeccccccchhhcccchhhhh--------hhcccchhhHhhhhhhcccCC--CccEEEEEECchH
Confidence 99999999999999999999999999999999 999999999999999999998 7899998887643
No 23
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=99.78 E-value=4.5e-19 Score=180.97 Aligned_cols=107 Identities=20% Similarity=0.286 Sum_probs=96.1
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
...++||||+++..|+.++..|...|+ .+.++||+|++.+|..+++
T Consensus 30 ~~~~~iif~~~~~~~~~~~~~l~~~g~----------------------------------~~~~~hg~~~~~eR~~~l~ 75 (181)
T d1t5la2 30 RNERTLVTTLTKKMAEDLTDYLKEAGI----------------------------------KVAYLHSEIKTLERIEIIR 75 (181)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHTTTC----------------------------------CEEEECSSCCHHHHHHHHH
T ss_pred cCCeEEEEeehhhhhHHHHHHHHhCCc----------------------------------ceeEecCCccHHHHHHHHH
Confidence 346899999999999999999998876 7899999999999999999
Q ss_pred HHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccc-----cCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-----LTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p-----~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
.|++|+++|||||+++++|||+|++++||+ ++.| .|...|+||+|||||.| .|.++++...
T Consensus 76 ~Fr~g~~~vLVaTdv~~rGiDip~v~~VI~--------~d~p~~~~~~s~~~yi~R~GRagR~g---~~~~~~~~~~ 141 (181)
T d1t5la2 76 DLRLGKYDVLVGINLLREGLDIPEVSLVAI--------LDADKEGFLRSERSLIQTIGRAARNA---NGHVIMYADT 141 (181)
T ss_dssp HHHHTSCSEEEESCCCSSSCCCTTEEEEEE--------TTTTSCSGGGSHHHHHHHHGGGTTST---TCEEEEECSS
T ss_pred HHHCCCCCEEEehhHHHccCCCCCCCEEEE--------ecCCcccccccHHHHHHHHHhhcccc---CceeEeecch
Confidence 999999999999999999999999999999 6655 47899999999999997 5666655544
No 24
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.77 E-value=8.2e-19 Score=177.85 Aligned_cols=120 Identities=22% Similarity=0.210 Sum_probs=101.9
Q ss_pred HHHHHHHH-hCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCC
Q 001047 430 IDTLWHLR-SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 508 (1174)
Q Consensus 430 ~~~l~~l~-~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsg 508 (1174)
...|..+. .....++||||+++..++.++..|...++ .+..+||+
T Consensus 20 ~~~L~~ll~~~~~~~~lIF~~~~~~~~~l~~~l~~~~~----------------------------------~~~~~hg~ 65 (168)
T d2rb4a1 20 YQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGH----------------------------------QVSLLSGE 65 (168)
T ss_dssp HHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTC----------------------------------CEEEECSS
T ss_pred HHHHHHHHHhCCCCcEEEEcCHHHHHHHHHHHHHhcCC----------------------------------cceecccc
Confidence 34444443 34567999999999999999999987665 68999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCcccc------CHHHHHHhhcccCCCCCCCc
Q 001047 509 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL------TSNELFQMAGRAGRRGIDNR 582 (1174)
Q Consensus 509 l~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~------s~~~y~Qr~GRAGR~G~d~~ 582 (1174)
|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ ++.|. ++..|+||+||+||.| ..
T Consensus 66 ~~~~~R~~~~~~F~~g~~~ilv~Td~~~~Gid~~~v~~Vi~--------yd~P~~~~~~~~~~~yihR~GR~gR~g--~~ 135 (168)
T d2rb4a1 66 LTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVN--------FDLPVKQGEEPDYETYLHRIGRTGRFG--KK 135 (168)
T ss_dssp CCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEE--------SSCCC--CCSCCHHHHHHHHCBC------CC
T ss_pred hhhHHHHHHhhhhcCCceeeeechhhhhhhhccccccEEEe--------ecCCCcccccCCHHHHHHHhhhcccCC--Cc
Confidence 99999999999999999999999999999999999999999 77776 5789999999999999 79
Q ss_pred cEEEEEeCCCC
Q 001047 583 GHVVLVQTPYE 593 (1174)
Q Consensus 583 G~~ill~~~~~ 593 (1174)
|.|+.|.++.+
T Consensus 136 g~~i~~~~~~d 146 (168)
T d2rb4a1 136 GLAFNMIEVDE 146 (168)
T ss_dssp EEEEEEECGGG
T ss_pred eEEEEEEcHHH
Confidence 99999988764
No 25
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=99.74 E-value=1.1e-17 Score=176.47 Aligned_cols=158 Identities=24% Similarity=0.351 Sum_probs=129.0
Q ss_pred CChHHHhhcCCCCCCHHHHHHHHHHHc----C--CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHH
Q 001047 147 IDVDELASIYDFRIDKFQRSSIEAFLR----G--SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFR 220 (1174)
Q Consensus 147 ~~~~~l~~~~~~~~~~~Q~~ai~~ll~----g--~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~ 220 (1174)
...+.+.+.++|.+++-|.+++..+.+ + .+.+++|.||||||.+|+.++...+.+|+++++++||..|+.|.++
T Consensus 43 ~~~~~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~ 122 (233)
T d2eyqa3 43 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 122 (233)
T ss_dssp HHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHH
T ss_pred HHHHhhhhccccccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHH
Confidence 345667788999999999999988753 3 3789999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC--CeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccccc
Q 001047 221 EFRETFGD--NNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287 (1174)
Q Consensus 221 ~l~~~~g~--~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d 287 (1174)
.|+++|+. .++.+++|..+. +...+|+|+|--.+.. ...+.++++||+||-|..
T Consensus 123 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~~-----------~~~f~~LgLiIiDEeH~f-- 189 (233)
T d2eyqa3 123 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS-----------DVKFKDLGLLIVDEEHRF-- 189 (233)
T ss_dssp HHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS-----------CCCCSSEEEEEEESGGGS--
T ss_pred HHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhcc-----------CCccccccceeeechhhh--
Confidence 99998876 478889987753 3478999999775542 445789999999999984
Q ss_pred CCcHHHHHHHHHHCCCCccEEEEccccCChHHHH
Q 001047 288 ISRGTVWEEIIIYCPKEVQIICLSATVANADELA 321 (1174)
Q Consensus 288 ~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~ 321 (1174)
|..-++.+.....++.++.+||||. ++.++
T Consensus 190 ---g~kQ~~~l~~~~~~~~~l~~SATPi-prtl~ 219 (233)
T d2eyqa3 190 ---GVRHKERIKAMRANVDILTLTATPI-PRTLN 219 (233)
T ss_dssp ---CHHHHHHHHHHHTTSEEEEEESSCC-CHHHH
T ss_pred ---hhHHHHHHHhhCCCCCEEEEecchh-HHHHH
Confidence 4444455555556789999999974 44444
No 26
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.74 E-value=8e-18 Score=176.90 Aligned_cols=138 Identities=22% Similarity=0.238 Sum_probs=110.9
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeC
Q 001047 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltG 236 (1174)
.++|+++|.+|+..++++++.++.+|||+|||++++..+.+ .++++||++|+++|++|+.+++.. |+...++.+.|
T Consensus 68 ~~~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~Liv~p~~~L~~q~~~~~~~-~~~~~~~~~~~ 143 (206)
T d2fz4a1 68 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE---LSTPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSG 143 (206)
T ss_dssp CCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH---SCSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEESS
T ss_pred CCCcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHHHH---hcCceeEEEcccchHHHHHHHHHh-hcccchhhccc
Confidence 46799999999999999999999999999999988765543 367899999999999999999987 66667888877
Q ss_pred CCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEcccc
Q 001047 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 237 d~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl 314 (1174)
+.. ...+|+|+|++.+...... ..+++++||+||||++... .+..++..++ ....++||||+
T Consensus 144 ~~~--~~~~i~i~t~~~~~~~~~~---------~~~~~~lvIiDEaH~~~a~----~~~~i~~~~~-~~~~lgLTATl 205 (206)
T d2fz4a1 144 RIK--ELKPLTVSTYDSAYVNAEK---------LGNRFMLLIFDEVHHLPAE----SYVQIAQMSI-APFRLGLTATF 205 (206)
T ss_dssp SCB--CCCSEEEEEHHHHHHTHHH---------HTTTCSEEEEECSSCCCTT----THHHHHHTCC-CSEEEEEEESC
T ss_pred ccc--cccccccceehhhhhhhHh---------hCCcCCEEEEECCeeCCcH----HHHHHHhccC-CCcEEEEecCC
Confidence 653 4668999999988765432 2357899999999998643 3555665554 45678999997
No 27
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.73 E-value=8.5e-18 Score=180.62 Aligned_cols=159 Identities=21% Similarity=0.317 Sum_probs=127.7
Q ss_pred CChHHHhhcCCCCCCHHHHHHHHHHHc----C--CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHH
Q 001047 147 IDVDELASIYDFRIDKFQRSSIEAFLR----G--SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFR 220 (1174)
Q Consensus 147 ~~~~~l~~~~~~~~~~~Q~~ai~~ll~----g--~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~ 220 (1174)
...+.+.+.++|.+|+-|.+|+..+.. + .+.+++|.||||||.+|+.++...+.+|.++++++||..|+.|.++
T Consensus 71 ~l~~~f~~~LPFeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~ 150 (264)
T d1gm5a3 71 KLAEEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYR 150 (264)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHH
T ss_pred HHHHHHHhhccccCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhcccceeEEeehHhhhHHHHH
Confidence 446678899999999999999998763 2 3779999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC--CeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccccccc
Q 001047 221 EFRETFGD--NNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287 (1174)
Q Consensus 221 ~l~~~~g~--~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d 287 (1174)
.|.++|+. ..+++++|..+. +++.+|+|+|...+.. ...+.++++|||||-|+.+-
T Consensus 151 ~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~-----------~~~f~~LglviiDEqH~fgv 219 (264)
T d1gm5a3 151 RTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----------DVHFKNLGLVIIDEQHRFGV 219 (264)
T ss_dssp HHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----------CCCCSCCCEEEEESCCCC--
T ss_pred HHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcC-----------CCCccccceeeeccccccch
Confidence 99999974 578999998763 3578999999876553 34567999999999999653
Q ss_pred CCcHHHHHHHHHHCCCCccEEEEccccCChHHHHH
Q 001047 288 ISRGTVWEEIIIYCPKEVQIICLSATVANADELAG 322 (1174)
Q Consensus 288 ~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~ 322 (1174)
.++ +.+.....++++++|||||. ++.++.
T Consensus 220 ~Qr-----~~l~~~~~~~~~l~~SATPi-prtl~~ 248 (264)
T d1gm5a3 220 KQR-----EALMNKGKMVDTLVMSATPI-PRSMAL 248 (264)
T ss_dssp --------CCCCSSSSCCCEEEEESSCC-CHHHHH
T ss_pred hhH-----HHHHHhCcCCCEEEEECCCC-HHHHHH
Confidence 332 22333445788999999974 444443
No 28
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}
Probab=99.72 E-value=1.1e-17 Score=183.97 Aligned_cols=148 Identities=18% Similarity=0.203 Sum_probs=114.9
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHHhCC--CeEEE
Q 001047 157 DFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA-NQRRIFYTTPLKALSNQKFREFRETFGD--NNVGL 233 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~-~g~rvlvl~PtraLa~Q~~~~l~~~~g~--~~v~l 233 (1174)
++.|+++|.+|+..+++++..++.+|||+|||+++...+..... .+.++||++|+++|+.|++++|.+.+.. ..++.
T Consensus 111 ~~~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~~~~~~~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~~~~~~ 190 (282)
T d1rifa_ 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp ECCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred ccccchHHHHHHHHHHhcCCceeEEEcccCccHHHHHHHHHhhhcccceEEEEEcCchhHHHHHHHHHHhhcccccccee
Confidence 46899999999999999899999999999999998766644433 4569999999999999999999986533 24555
Q ss_pred EeCCCCC----CCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEE
Q 001047 234 LTGDSAI----NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIIC 309 (1174)
Q Consensus 234 ltGd~~~----~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~ 309 (1174)
+.++... .....|+|+|++.+.++. ..+++++++||+||||++. +..+..++..+.+....+|
T Consensus 191 ~~~g~~~~~~~~~~~~i~i~t~qs~~~~~---------~~~~~~f~~VIvDEaH~~~----a~~~~~il~~~~~~~~rlG 257 (282)
T d1rifa_ 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQP---------KEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMFKFG 257 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHTTSC---------GGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCEEEE
T ss_pred ecceecccccccccceEEEEeeehhhhhc---------ccccCCCCEEEEECCCCCC----chhHHHHHHhccCCCeEEE
Confidence 5554432 246789999998765432 3356789999999999964 5667777777654444699
Q ss_pred EccccCCh
Q 001047 310 LSATVANA 317 (1174)
Q Consensus 310 LSATl~n~ 317 (1174)
||||+++.
T Consensus 258 lTaT~~~~ 265 (282)
T d1rifa_ 258 LSGSLRDG 265 (282)
T ss_dssp ECSSCCTT
T ss_pred EEeecCCC
Confidence 99999764
No 29
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=99.71 E-value=6e-18 Score=165.64 Aligned_cols=135 Identities=18% Similarity=0.201 Sum_probs=98.2
Q ss_pred HHcCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEE
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIM 249 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~ 249 (1174)
+.+|++++++||||||||++++.+++... ..+.++++++|+++|++|+++.+.... ..+....+.........+.++
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~p~~~l~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 81 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLD--VKFHTQAFSAHGSGREVIDAM 81 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC--EEEESSCCCCCCCSSCCEEEE
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeeecchhHHHHHHHHhhhhh--hhhcccccccccccccchhhh
Confidence 34689999999999999998876665444 567899999999999999988775421 123333444455567788999
Q ss_pred cHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHH-HHHHHHHHCCCCccEEEEccccC
Q 001047 250 TTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT-VWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 250 Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~-~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
|...+.+.... ...+.++++||+||||++....... .+...+.. .++.++|+||||||
T Consensus 82 ~~~~l~~~~~~-------~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~-~~~~~~l~lTATPp 140 (140)
T d1yksa1 82 CHATLTYRMLE-------PTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPP 140 (140)
T ss_dssp EHHHHHHHHTS-------SSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCT
T ss_pred hHHHHHHHHhc-------cccccceeEEEEccccccChhhHHHHHHHHHHhh-CCCCCEEEEEcCCC
Confidence 99988776543 5567899999999999986433221 12222223 45799999999986
No 30
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.70 E-value=7.8e-18 Score=163.78 Aligned_cols=104 Identities=22% Similarity=0.215 Sum_probs=88.6
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
..+++||||+|++.|+.++..|...|+ .+..+|++|+..
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~----------------------------------~~~~~H~~~~~~------- 72 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGI----------------------------------NAVAYYRGLDVS------- 72 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTC----------------------------------EEEEECTTCCSC-------
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhcccc----------------------------------chhhhhccchhh-------
Confidence 456899999999999999999987776 688899999965
Q ss_pred HHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
.|++|..+|||||+++++||| |++..||+... .++.|.++.+|+||+||||| | ..|. +.+.++.+
T Consensus 73 ~~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~----~~~~P~~~~~y~qr~GR~gR-g--~~G~-~~~i~~~e 137 (138)
T d1jr6a_ 73 VIPTNGDVVVVATDALMTGFT-GDFDSVIDCNT----SDGKPQDAVSRTQRRGRTGR-G--KPGI-YRFVAPGE 137 (138)
T ss_dssp CCTTSSCEEEEESSSSCSSSC-CCBSEEEECSE----ETTEECCHHHHHHHHTTBCS-S--SCEE-EEECCSSC
T ss_pred hhhhhhcceeehhHHHHhccc-cccceEEEEEe----cCCCCCCHHHHHhHhccccC-C--CCcE-EEEEcCCC
Confidence 478999999999999999999 99999998321 24579999999999999999 7 7885 55666654
No 31
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.68 E-value=5e-17 Score=158.91 Aligned_cols=127 Identities=19% Similarity=0.089 Sum_probs=97.2
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEI 253 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~ 253 (1174)
.+..++.||||||||+++...+ ...+.+++|++|+++|++|+++.+.+.++.. .+...++........++++|++.
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~---~~~~~~vli~~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 83 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAY---AAQGYKVLVLNPSVAATLGFGAYMSKAHGVD-PNIRTGVRTITTGSPITYSTYGK 83 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHH---HTTTCCEEEEESCHHHHHHHHHHHHHHHSCC-CEEECSSCEECCCCSEEEEEHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHH---HHcCCcEEEEcChHHHHHHHHHHHHHHhhcc-ccccccccccccccceEEEeeee
Confidence 3678999999999998765444 3568899999999999999999999988765 45555555566678899999998
Q ss_pred HHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHC--CCCccEEEEcccc
Q 001047 254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYC--PKEVQIICLSATV 314 (1174)
Q Consensus 254 L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l--~~~~qiI~LSATl 314 (1174)
+.... ...+.++++||+||||++.. .....+..++..+ .++.++|+||||+
T Consensus 84 ~~~~~---------~~~~~~~~~vIiDE~H~~~~-~~~~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 84 FLADG---------GCSGGAYDIIICDECHSTDA-TSILGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp HHHTT---------GGGGCCCSEEEEETTTCCSH-HHHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred ecccc---------chhhhcCCEEEEecccccCH-HHHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 76543 33577899999999999753 2333455555544 3467899999996
No 32
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.58 E-value=2.3e-15 Score=166.39 Aligned_cols=127 Identities=18% Similarity=0.188 Sum_probs=97.3
Q ss_pred HHHHHHH-HhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCC
Q 001047 430 IDTLWHL-RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAG 508 (1174)
Q Consensus 430 ~~~l~~l-~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsg 508 (1174)
.++|..+ ......++||||+++..|+.+++.|...++... ..........|++
T Consensus 149 ~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~--------------------------~~~g~~~~~~~~~ 202 (286)
T d1wp9a2 149 KEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAK--------------------------RFVGQASKENDRG 202 (286)
T ss_dssp HHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEE--------------------------EECCSSCC-----
T ss_pred HHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceE--------------------------Eeeccccccccch
Confidence 3444433 245667999999999999999999986654210 0011123345778
Q ss_pred CCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEE
Q 001047 509 CLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 588 (1174)
Q Consensus 509 l~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill 588 (1174)
++..+|..+++.|++|.++|||||+++++|||+|++++||+ |+.|.++..|+||+||+||.+ .|.++++
T Consensus 203 ~~~~~~~~~~~~F~~g~~~vLv~T~~~~~Gld~~~~~~Vi~--------~d~~~~~~~~~Qr~GR~gR~~---~~~~~~l 271 (286)
T d1wp9a2 203 LSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF--------YEPVPSAIRSIQRRGRTGRHM---PGRVIIL 271 (286)
T ss_dssp --CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEE--------SSCCHHHHHHHHHHTTSCSCC---CSEEEEE
T ss_pred hchHHHHHHHHHHHcCCCcEEEEccceeccccCCCCCEEEE--------eCCCCCHHHHHHHHHhCCCCC---CCEEEEE
Confidence 99999999999999999999999999999999999999999 999999999999999999975 7888877
Q ss_pred eCCCC
Q 001047 589 QTPYE 593 (1174)
Q Consensus 589 ~~~~~ 593 (1174)
.++..
T Consensus 272 ~~~~~ 276 (286)
T d1wp9a2 272 MAKGT 276 (286)
T ss_dssp EETTS
T ss_pred EeCCC
Confidence 77654
No 33
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.47 E-value=2.4e-14 Score=149.35 Aligned_cols=107 Identities=15% Similarity=0.087 Sum_probs=92.5
Q ss_pred HhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHH
Q 001047 437 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSF 516 (1174)
Q Consensus 437 ~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~ 516 (1174)
......++||||.+...++.+++.| ++..+||++++.+|+.
T Consensus 89 ~~~~~~k~lvf~~~~~~~~~l~~~l---------------------------------------~~~~i~g~~~~~~R~~ 129 (200)
T d2fwra1 89 ERHRKDKIIIFTRHNELVYRISKVF---------------------------------------LIPAITHRTSREEREE 129 (200)
T ss_dssp HHTSSSCBCCBCSCHHHHHHHHHHT---------------------------------------TCCBCCSSSCSHHHHT
T ss_pred HhCCCCcEEEEeCcHHHHHHHHhhc---------------------------------------CcceeeCCCCHHHHHH
Confidence 3345679999999999988887665 3556899999999999
Q ss_pred HHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCC-ccEEEEEeC
Q 001047 517 IEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDN-RGHVVLVQT 590 (1174)
Q Consensus 517 v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~-~G~~ill~~ 590 (1174)
+++.|++|.++|||||+++++|||+|.+++||. ++.|.|+..|+||+||++|.|.++ .++++-|..
T Consensus 130 ~l~~F~~~~~~vLv~~~~~~~Gidl~~~~~vi~--------~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~ 196 (200)
T d2fwra1 130 ILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI--------MSGSGSAREYIQRLGRILRPSKGKKEAVLYELIS 196 (200)
T ss_dssp HHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE--------ECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEE
T ss_pred HHHHhhcCCeeeeeecchhhcccCCCCCCEEEE--------eCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEec
Confidence 999999999999999999999999999999999 889999999999999999999754 355554443
No 34
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.46 E-value=1.3e-14 Score=154.77 Aligned_cols=105 Identities=16% Similarity=0.115 Sum_probs=90.0
Q ss_pred CCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHH------
Q 001047 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWK------ 514 (1174)
Q Consensus 441 ~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R------ 514 (1174)
.+++||||+|++.|+.++..|...|+ .+..+||+|++..|
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~Gi----------------------------------~a~~~Hgglsq~~R~~~gd~ 81 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVALGI----------------------------------NAVAYYRGLDVSVIPTSGDV 81 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTC----------------------------------CEEEECTTSCGGGSCSSSSE
T ss_pred CCCEEEECCcHHHHHHHHHHHHHCCC----------------------------------CEEEEeCCchHHHHHhccch
Confidence 46899999999999999999988776 67889999999876
Q ss_pred ----HHHHHHHhcCCceEEEechhhhh---cCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEE
Q 001047 515 ----SFIEELFQRGLVKVVFATETLAA---GINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL 587 (1174)
Q Consensus 515 ----~~v~~~F~~G~ikVLVAT~tla~---GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~il 587 (1174)
..+++.|..|.+++||+|+++++ |+|++.+.+||+ ++.|.|+.+|+||+||+|| | ..|...+
T Consensus 82 ~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giDid~V~~VI~--------~d~P~SvesyIQRiGRTGR-G--r~G~~~~ 150 (299)
T d1a1va2 82 VVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIET--------TTLPQDAVSRTQRRGRTGR-G--KPGIYRF 150 (299)
T ss_dssp EEEECTTC---CCCCBSEEEECCEEEEEEEECCCSSSCEEEE--------EEEECBHHHHHHHHTTBCS-S--SCEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeehhccCCCCCCCcceEEEe--------CCCCCCHHHHHhhccccCC-C--CCceEEE
Confidence 45778899999999999999998 778888999999 8999999999999999999 7 6787665
Q ss_pred EeC
Q 001047 588 VQT 590 (1174)
Q Consensus 588 l~~ 590 (1174)
+..
T Consensus 151 l~~ 153 (299)
T d1a1va2 151 VAP 153 (299)
T ss_dssp SCS
T ss_pred Eec
Confidence 443
No 35
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.43 E-value=2.1e-14 Score=148.35 Aligned_cols=82 Identities=21% Similarity=0.299 Sum_probs=75.2
Q ss_pred ceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccc-cCHHHHHHhhcccCCCCC
Q 001047 501 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-LTSNELFQMAGRAGRRGI 579 (1174)
Q Consensus 501 gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p-~s~~~y~Qr~GRAGR~G~ 579 (1174)
.++++||.|++.+|+.++..|++|+++|||||+++++|||+|++++||. ++.+ ...+.|.|+.||+||.|
T Consensus 66 ~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaTtViE~GIDip~a~~iii--------~~a~~fglsqlhQlrGRvGR~~- 136 (206)
T d1gm5a4 66 KLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI--------ENPERFGLAQLHQLRGRVGRGG- 136 (206)
T ss_dssp CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB--------CSCSSSCTTHHHHHHHTSCCSS-
T ss_pred eEEEEeecccHHHHHHHHHHHHCCCEEEEEEehhhhccccccCCcEEEE--------EccCCccHHHHHhhhhheeecc-
Confidence 6889999999999999999999999999999999999999999999888 5555 47888999999999999
Q ss_pred CCccEEEEEeCCC
Q 001047 580 DNRGHVVLVQTPY 592 (1174)
Q Consensus 580 d~~G~~ill~~~~ 592 (1174)
..|+|+++.++.
T Consensus 137 -~~~~~~l~~~~~ 148 (206)
T d1gm5a4 137 -QEAYCFLVVGDV 148 (206)
T ss_dssp -TTCEEECCCCSC
T ss_pred -ccceeEeeeccc
Confidence 899999988764
No 36
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=99.39 E-value=9e-13 Score=134.49 Aligned_cols=111 Identities=18% Similarity=0.260 Sum_probs=92.3
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
.++++.|.||.....+.++..+.+ .+|+ ..|+++||.|++.+++.++.
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~---------------------~~p~-----------~~i~~lHGkm~~~eke~im~ 77 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAE---------------------LVPE-----------ARIAIGHGQMRERELERVMN 77 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHH---------------------HCTT-----------SCEEECCSSCCHHHHHHHHH
T ss_pred cCCeEEEEEcCccchhhHHHHHHH---------------------hCCc-----------eEEEEEEeccCHHHHHHHHH
Confidence 457888889987777766655542 2222 26999999999999999999
Q ss_pred HHhcCCceEEEechhhhhcCCcCCceEEEecccccCCCCccc-cCHHHHHHhhcccCCCCCCCccEEEEEeCCC
Q 001047 520 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-LTSNELFQMAGRAGRRGIDNRGHVVLVQTPY 592 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p-~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~ 592 (1174)
.|.+|+++|||||.+++.|||+|+.+++|. .+.. ...+.+.|..||+||.+ ..|+||++..+.
T Consensus 78 ~F~~g~~~ILv~TtvIEvGiDvpnA~~iiI--------~~a~rfGLaQLhQLRGRVGR~~--~~s~c~l~~~~~ 141 (211)
T d2eyqa5 78 DFHHQRFNVLVCTTIIETGIDIPTANTIII--------ERADHFGLAQLHQLRGRVGRSH--HQAYAWLLTPHP 141 (211)
T ss_dssp HHHTTSCCEEEESSTTGGGSCCTTEEEEEE--------TTTTSSCHHHHHHHHTTCCBTT--BCEEEEEEECCG
T ss_pred HHHcCCcceEEEehhhhhccCCCCCcEEEE--------ecchhccccccccccceeeecC--ccceEEEEecCC
Confidence 999999999999999999999999999887 3322 47889999999999998 889999998653
No 37
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.37 E-value=8.4e-15 Score=158.15 Aligned_cols=99 Identities=13% Similarity=0.054 Sum_probs=81.9
Q ss_pred CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHH
Q 001047 439 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 518 (1174)
Q Consensus 439 ~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~ 518 (1174)
.-+.++||||++++.|+.++.+|.. .+||+|++.+|..++
T Consensus 23 ~~~~~~iif~~~~~~~~~l~~~l~~----------------------------------------~~hg~~~~~~R~~~~ 62 (248)
T d1gkub2 23 KLGTGGIIYARTGEEAEEIYESLKN----------------------------------------KFRIGIVTATKKGDY 62 (248)
T ss_dssp TSCSCEEEEESSHHHHHHHHHTTTT----------------------------------------SSCEEECTTSSSHHH
T ss_pred HhCCCEEEEECCHHHHHHHHHHHHH----------------------------------------hccCCCCHHHHHHHH
Confidence 3346899999999999999988752 169999999999999
Q ss_pred HHHhcCCceEEEec----hhhhhcCCcCC-ceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCC
Q 001047 519 ELFQRGLVKVVFAT----ETLAAGINMPA-RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 591 (1174)
Q Consensus 519 ~~F~~G~ikVLVAT----~tla~GIDiP~-v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~ 591 (1174)
+.|++|.++||||| +++++|||+|+ +++||+ |+.|. |.||+||+||.| ..|.++++...
T Consensus 63 ~~f~~g~~~vLVaT~a~~~v~~rGlDip~~v~~VI~--------~d~P~----~~~r~gR~~R~g--~~~~~~~~~~~ 126 (248)
T d1gkub2 63 EKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF--------VGCPS----FRVTIEDIDSLS--PQMVKLLAYLY 126 (248)
T ss_dssp HHHHHTSCSEEEEECC------CCSCCTTTCCEEEE--------ESCCE----EEEECSCGGGSC--HHHHHHHHTTT
T ss_pred HHHHhCCCeEEEEeccccchhhhccCccccccEEEE--------eCCCc----chhhhhhhhccC--cceEeeeeccH
Confidence 99999999999999 78999999996 999999 78885 899999999998 66766544443
No 38
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=99.13 E-value=5.5e-11 Score=129.45 Aligned_cols=109 Identities=18% Similarity=0.245 Sum_probs=82.8
Q ss_pred CCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHHH
Q 001047 441 MLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEEL 520 (1174)
Q Consensus 441 ~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~ 520 (1174)
.++++|||+|..+++.++..|...|. .|..+||.+...+++.
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~g~----------------------------------~V~~l~~~~~~~e~~~---- 77 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKAGK----------------------------------SVVVLNRKTFEREYPT---- 77 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTC----------------------------------CEEECCSSSCC---------
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCC----------------------------------eEEEEcCcCcHhHHhh----
Confidence 57899999999999999999987664 6889999999887664
Q ss_pred HhcCCceEEEechhhhhcCCcCCceEEEeccc-----ccCCC------CccccCHHHHHHhhcccCCCCCCCccEEEEEe
Q 001047 521 FQRGLVKVVFATETLAAGINMPARTAVLSSLS-----KRTAS------GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQ 589 (1174)
Q Consensus 521 F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~-----k~~~~------~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~ 589 (1174)
|++|..+|||||+++++|||++ +.+||+.+. .|+.. ...|+|.++..||.||+||.+ ....+++++
T Consensus 78 ~~~~~~~~~~~t~~~~~~~~~~-~~~vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~--~~~~~~~~y 154 (299)
T d1yksa2 78 IKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP--NRDGDSYYY 154 (299)
T ss_dssp ---CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT--TCCCEEEEE
T ss_pred hhcCCcCEEEEechhhhceecC-ceEEEecCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccC--CCceEEEEe
Confidence 6789999999999999999995 999997653 24332 246899999999999999986 334454444
Q ss_pred C
Q 001047 590 T 590 (1174)
Q Consensus 590 ~ 590 (1174)
.
T Consensus 155 ~ 155 (299)
T d1yksa2 155 S 155 (299)
T ss_dssp C
T ss_pred C
Confidence 3
No 39
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.07 E-value=5.1e-10 Score=118.52 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=107.6
Q ss_pred CCCHHHHHHHHHHH----cCCcEEEEccCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHHHhCCCeEE
Q 001047 159 RIDKFQRSSIEAFL----RGSSVVVSAPTSSGKTLIAEAAAVATVANQ--RRIFYTTPLKALSNQKFREFRETFGDNNVG 232 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll----~g~~vlv~apTGsGKTlv~~~~il~~l~~g--~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ 232 (1174)
.+.|||.+++..+. .+..+|++.++|.|||+.++..+......+ .+++|++| ..+..|+.+++.+......+.
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~~~~~LIv~p-~~l~~~W~~e~~~~~~~~~~~ 90 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRFA 90 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCEE
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhhcccccccceecc-hhhhhHHHHHHHhhcccccce
Confidence 68999999998653 345689999999999999876665554433 58999999 688899999999877666565
Q ss_pred EEeCCCC--CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEE
Q 001047 233 LLTGDSA--INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL 310 (1174)
Q Consensus 233 lltGd~~--~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~L 310 (1174)
...+... ...+.+|+++|++.+.+.-.- .-.+.++||+||+|++..... .....+..+. ....++|
T Consensus 91 ~~~~~~~~~~~~~~~vvi~~~~~~~~~~~l---------~~~~~~~vI~DEah~~k~~~s--~~~~~~~~l~-a~~r~~L 158 (230)
T d1z63a1 91 VFHEDRSKIKLEDYDIILTTYAVLLRDTRL---------KEVEWKYIVIDEAQNIKNPQT--KIFKAVKELK-SKYRIAL 158 (230)
T ss_dssp ECSSSTTSCCGGGSSEEEEEHHHHTTCHHH---------HTCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-EEEEEEE
T ss_pred eeccccchhhccCcCEEEeeHHHHHhHHHH---------hcccceEEEEEhhhcccccch--hhhhhhhhhc-cceEEEE
Confidence 5443322 224679999999987643211 112678899999999975322 2223344443 3457999
Q ss_pred ccccCC--hHHHHHHHhc
Q 001047 311 SATVAN--ADELAGWIGQ 326 (1174)
Q Consensus 311 SATl~n--~~~~~~~l~~ 326 (1174)
|||+-+ ..++...+..
T Consensus 159 TgTPi~n~~~dl~~ll~~ 176 (230)
T d1z63a1 159 TGTPIENKVDDLWSIMTF 176 (230)
T ss_dssp CSSCSTTCHHHHHHHHHH
T ss_pred ecchHHhHHHHHHHHHHh
Confidence 999853 5666555543
No 40
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=99.05 E-value=9.7e-10 Score=121.14 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHHH---------cCCcEEEEccCCcchHHHHHHHHHHHHhcC-------CeEEEEcccHHHHHHHHHHH
Q 001047 159 RIDKFQRSSIEAFL---------RGSSVVVSAPTSSGKTLIAEAAAVATVANQ-------RRIFYTTPLKALSNQKFREF 222 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll---------~g~~vlv~apTGsGKTlv~~~~il~~l~~g-------~rvlvl~PtraLa~Q~~~~l 222 (1174)
.++|||.+++..+. .+..+|++-.+|.|||++++..+...+..+ .++||++|. .|..||.+++
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~-sl~~qW~~Ei 133 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccc-hhhHHHHHHH
Confidence 58999999998763 245689999999999998765555444432 369999996 6899999999
Q ss_pred HHHhCC-CeEEEEeCCCC---------------CCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 223 RETFGD-NNVGLLTGDSA---------------INREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 223 ~~~~g~-~~v~lltGd~~---------------~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
.++++. ..+..++|+.. ......++++|++.+...... ..-.++++||+||+|++.
T Consensus 134 ~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~--------l~~~~~~~vI~DEaH~ik 205 (298)
T d1z3ix2 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV--------LHKGKVGLVICDEGHRLK 205 (298)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT--------TTTSCCCEEEETTGGGCC
T ss_pred HhhcCCceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhc--------ccccceeeeecccccccc
Confidence 997764 33444555432 123567999999988765432 122367899999999997
Q ss_pred cCCcHHHHHHHHHHCCCCccEEEEccccC
Q 001047 287 DISRGTVWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 287 d~~~g~~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
... ......+..+. ....++||||+-
T Consensus 206 n~~--s~~~~a~~~l~-~~~rllLTGTPi 231 (298)
T d1z3ix2 206 NSD--NQTYLALNSMN-AQRRVLISGTPI 231 (298)
T ss_dssp TTC--HHHHHHHHHHC-CSEEEEECSSCS
T ss_pred ccc--chhhhhhhccc-cceeeeecchHH
Confidence 432 22223333343 356799999984
No 41
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=98.92 E-value=5.1e-09 Score=116.96 Aligned_cols=120 Identities=10% Similarity=-0.028 Sum_probs=101.2
Q ss_pred HHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCC
Q 001047 430 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGC 509 (1174)
Q Consensus 430 ~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl 509 (1174)
..++..+...++.++|||+..+...+.+...|...|+ ....+||++
T Consensus 107 ~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~----------------------------------~~~~l~G~~ 152 (346)
T d1z3ix1 107 DYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRY----------------------------------LYVRLDGTM 152 (346)
T ss_dssp HHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTC----------------------------------CEEEECSSC
T ss_pred HHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhc----------------------------------cccccccch
Confidence 3444444445667999999999999888888876554 577899999
Q ss_pred CHHHHHHHHHHHhcCCce---EEEechhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEE
Q 001047 510 LPIWKSFIEELFQRGLVK---VVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVV 586 (1174)
Q Consensus 510 ~~~~R~~v~~~F~~G~ik---VLVAT~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~i 586 (1174)
+..+|..+++.|+++... +|++|.+.+.|+|++..+.||. ++.++++..+.|++||+.|.|+...-.++
T Consensus 153 ~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~--------~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~ 224 (346)
T d1z3ix1 153 SIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM--------FDPDWNPANDEQAMARVWRDGQKKTCYIY 224 (346)
T ss_dssp CHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE--------CSCCSSHHHHHHHHTTSSSTTCCSCEEEE
T ss_pred hHHHHHHHHHhhhcccccceeeeecchhhhhccccccceEEEE--------ecCCCccchHhHhhhcccccCCCCceEEE
Confidence 999999999999986543 7888999999999999999999 89999999999999999999988777777
Q ss_pred EEeCC
Q 001047 587 LVQTP 591 (1174)
Q Consensus 587 ll~~~ 591 (1174)
.+...
T Consensus 225 rli~~ 229 (346)
T d1z3ix1 225 RLLST 229 (346)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 66554
No 42
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=98.78 E-value=9.1e-09 Score=109.70 Aligned_cols=122 Identities=15% Similarity=-0.017 Sum_probs=83.1
Q ss_pred hHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecC
Q 001047 428 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHA 507 (1174)
Q Consensus 428 ~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hs 507 (1174)
.+.+.+..+.. ++.++||||......+.+...+... +...+..+||
T Consensus 73 ~l~~~l~~~~~-~g~kviIFs~~~~~~~~l~~~l~~~---------------------------------~~~~~~~i~G 118 (244)
T d1z5za1 73 RTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKE---------------------------------LNTEVPFLYG 118 (244)
T ss_dssp HHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHH---------------------------------HCSCCCEECT
T ss_pred HHHHHHHhhcc-cccceEEEeeceehHHHHHHHHHhh---------------------------------ccceEEEEec
Confidence 34445544433 4579999999999888777666421 1125778999
Q ss_pred CCCHHHHHHHHHHHhcC-CceEEEe-chhhhhcCCcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEE
Q 001047 508 GCLPIWKSFIEELFQRG-LVKVVFA-TETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 585 (1174)
Q Consensus 508 gl~~~~R~~v~~~F~~G-~ikVLVA-T~tla~GIDiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ 585 (1174)
+++..+|+.+.+.|+++ ..+||++ |.+.+.|+|++.++.||. ++.++++..+.|+.||+.|.|+.....+
T Consensus 119 ~~~~~~R~~~i~~F~~~~~~~vll~~~~~~g~Glnl~~a~~vi~--------~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i 190 (244)
T d1z5za1 119 ELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH--------FDRWWNPAVEDQATDRVYRIGQTRNVIV 190 (244)
T ss_dssp TSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEE--------CSCCSCTTTC--------------CCEE
T ss_pred ccchhccchhhhhhhccccchhccccccccccccccchhhhhhh--------cCchhhhHHHhhhcceeeecCCCCceEE
Confidence 99999999999999875 4666655 578899999999999999 8899999999999999999998777777
Q ss_pred EEEeCC
Q 001047 586 VLVQTP 591 (1174)
Q Consensus 586 ill~~~ 591 (1174)
+.+...
T Consensus 191 ~~l~~~ 196 (244)
T d1z5za1 191 HKLISV 196 (244)
T ss_dssp EEEEET
T ss_pred EEEeeC
Confidence 755544
No 43
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=98.37 E-value=9.8e-07 Score=86.40 Aligned_cols=120 Identities=18% Similarity=0.152 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEec
Q 001047 427 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 506 (1174)
Q Consensus 427 ~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~H 506 (1174)
..+++.+..+... +.|+|||+.|...++.++..|...++ ...+++
T Consensus 21 ~AIi~eV~~~~~~-grPVLIgT~SIe~SE~ls~~L~~~gi----------------------------------~h~vLn 65 (175)
T d1tf5a4 21 KAVAEDVAQRYMT-GQPVLVGTVAVETSELISKLLKNKGI----------------------------------PHQVLN 65 (175)
T ss_dssp HHHHHHHHHHHHH-TCCEEEEESCHHHHHHHHHHHHTTTC----------------------------------CCEEEC
T ss_pred HHHHHHHHHHHhc-CCCEEEEeCcHHHHHHHHHHHHHcCC----------------------------------Cceeeh
Confidence 3445555544443 47999999999999999999987776 344566
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCC--------ceEEEecccccCCCCccccCHHHHHHhhcccCCCC
Q 001047 507 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA--------RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578 (1174)
Q Consensus 507 sgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~--------v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G 578 (1174)
+.....+-+.|-+.-..| .|.|||+.+.+|.||.- --+||. ...+-|..-..|..||+||.|
T Consensus 66 Ak~~~~Ea~II~~Ag~~g--~VtIATNmAGRGtDikl~~~v~~~GGLhVI~--------t~~~~s~Rid~Ql~GR~gRQG 135 (175)
T d1tf5a4 66 AKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVG--------TERHESRRIDNQLRGRSGRQG 135 (175)
T ss_dssp SSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEE--------SSCCSSHHHHHHHHTTSSGGG
T ss_pred hhhHHHHHHHHHhccCCC--ceeehhhHHHcCCCccchHHHHhCCCcEEEE--------eccCcchhHHHHHhcchhhhC
Confidence 665443333333333333 69999999999999842 234555 456778999999999999999
Q ss_pred CCCccEEEEEeCCCC
Q 001047 579 IDNRGHVVLVQTPYE 593 (1174)
Q Consensus 579 ~d~~G~~ill~~~~~ 593 (1174)
..|.+.+|.+-.+
T Consensus 136 --dpGs~~~~~sleD 148 (175)
T d1tf5a4 136 --DPGITQFYLSMED 148 (175)
T ss_dssp --CCEEEEEEEETTS
T ss_pred --CCcccEEEEEcCH
Confidence 8898887776544
No 44
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=98.15 E-value=6.4e-06 Score=85.60 Aligned_cols=133 Identities=18% Similarity=0.159 Sum_probs=97.6
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH---HhC
Q 001047 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE---TFG 227 (1174)
Q Consensus 151 ~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~---~~g 227 (1174)
.-+...+..+.+.|.-.--.+.+|+ |..+.||=|||+++.+|+.-....|+.|-+++..--||..=++++.. .+|
T Consensus 72 AakRtlG~RhyDVQLiGgi~L~~G~--iaem~TGEGKTL~a~l~a~l~al~g~~vhvvTvNdyLA~RDae~m~~iy~~lG 149 (273)
T d1tf5a3 72 ASRRVTGMFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLG 149 (273)
T ss_dssp HHHHHHSCCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhceEEehhHHHHHHHHHhhh--heeecCCCcchhHHHHHHHHHHhcCCCceEEecCccccchhhhHHhHHHHHcC
Confidence 3455667788899988877787774 88999999999999999988878888999999999999875555554 455
Q ss_pred CCeEEEEeCCCCCCC-----CCcEEEEcHHHHH-HHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 228 DNNVGLLTGDSAINR-----EAQILIMTTEILR-NMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 228 ~~~v~lltGd~~~~~-----~~~IlV~Tpe~L~-~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
..||.++.+..... .++|+++|..-+- +.|......-......+.+.+.|+||||.++
T Consensus 150 -lsvg~~~~~~~~~~r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsil 213 (273)
T d1tf5a3 150 -LTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 213 (273)
T ss_dssp -CCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred -CCccccccccCHHHHHHHhhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhh
Confidence 67888876654332 5899999998543 2332221111133445679999999999875
No 45
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
Probab=97.95 E-value=8.5e-06 Score=90.72 Aligned_cols=144 Identities=15% Similarity=0.154 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHH--HHH--hcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEE
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAV--ATV--ANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLL 234 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il--~~l--~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ll 234 (1174)
...+.|..|+..++.++-++|.||.|+|||.+....+. ... ..+.++++++||-.-+..+.+.+..........
T Consensus 148 ~~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~~~~-- 225 (359)
T d1w36d1 148 DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT-- 225 (359)
T ss_dssp TSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC--
T ss_pred ccccHHHHHHHHHHcCCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHHHHHHhhcCch--
Confidence 35779999999999999999999999999987543322 222 245689999999988887776665432211000
Q ss_pred eCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 235 TGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 235 tGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
... ......-..|..++.........+.........+++||||||-++. ...+..++..++.+.++|++-
T Consensus 226 ~~~---~~~~~~~~~t~~~ll~~~~~~~~~~~~~~~~l~~d~lIIDEaSmv~----~~l~~~ll~~~~~~~~lILvG 295 (359)
T d1w36d1 226 DEQ---KKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID----LPMMSRLIDALPDHARVIFLG 295 (359)
T ss_dssp SCC---CCSCSCCCBTTTSCC-----------CTTSCCSCSEEEECSGGGCB----HHHHHHHHHTCCTTCEEEEEE
T ss_pred hhh---hhhhhhhhhHHHHHHhhhhcchHHHHhhhcccccceeeehhhhccC----HHHHHHHHHHhcCCCEEEEEC
Confidence 000 0000000111111111110000011123334578999999998874 344556777778777777653
No 46
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.85 E-value=3.6e-05 Score=80.16 Aligned_cols=133 Identities=18% Similarity=0.127 Sum_probs=96.7
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH---HhC
Q 001047 151 ELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRE---TFG 227 (1174)
Q Consensus 151 ~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~---~~g 227 (1174)
.-+...+..+.+.|.-.--.+.+| -|..+.||=|||+++.+|+.-....|+.|-+++..--||..=++++.. .+|
T Consensus 89 AakRtlGmRhyDVQLiGgi~l~~g--~iaem~TGEGKTL~a~l~a~l~al~g~~vhvvTvNdyLA~RDa~~m~~~y~~lG 166 (288)
T d1nkta3 89 AAWRVLDQRPFDVQVMGAAALHLG--NVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLG 166 (288)
T ss_dssp HHHHHHSCCCCHHHHHHHHHHHTT--EEEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhccceeeeehhHHHHHHhhh--hhhcccCCCchhHHHHHHHHHHHhcCCCeEEEecCchhhhhhHHHHHHHHHHhC
Confidence 344556677888998776666654 688999999999999999988888899999999999999875555554 455
Q ss_pred CCeEEEEeCCCCCCC-----CCcEEEEcHHHHH-HHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 228 DNNVGLLTGDSAINR-----EAQILIMTTEILR-NMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 228 ~~~v~lltGd~~~~~-----~~~IlV~Tpe~L~-~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
..||++..+..... .++|+++|..-+- +.|......-......+.+.+.|+||||.++
T Consensus 167 -lsvg~~~~~~~~~~~~~~Y~~di~Y~t~~e~gfDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiL 230 (288)
T d1nkta3 167 -LQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSIL 230 (288)
T ss_dssp -CCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHH
T ss_pred -CCcCcccccCChHHHHHHhhcccccccHHHHhhhhhhhhhccChhhhcccCCcEEEEEcccccc
Confidence 67998887665332 5899999998543 2232211111133455688999999999875
No 47
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.42 E-value=0.00061 Score=67.38 Aligned_cols=120 Identities=15% Similarity=0.072 Sum_probs=81.1
Q ss_pred chhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEe
Q 001047 426 VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAH 505 (1174)
Q Consensus 426 ~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~ 505 (1174)
+..+++.+..+... +.|+||.+.|....+.+...|...++ ...++
T Consensus 20 ~~Avv~ei~~~h~~-GqPVLVGT~SVe~SE~lS~lL~~~gi----------------------------------~h~vL 64 (219)
T d1nkta4 20 YIAVVDDVAERYAK-GQPVLIGTTSVERSEYLSRQFTKRRI----------------------------------PHNVL 64 (219)
T ss_dssp HHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHHHHHHTTC----------------------------------CCEEE
T ss_pred HHHHHHHHHHHHhc-CCCEEEeeCcHHHHHHHHHHHHHhcc----------------------------------chhcc
Confidence 44555556665544 57999999999999999999988776 23445
Q ss_pred cCCCCHHHHHHHHHHHhcC-CceEEEechhhhhcCCcCC-----------------------------------------
Q 001047 506 HAGCLPIWKSFIEELFQRG-LVKVVFATETLAAGINMPA----------------------------------------- 543 (1174)
Q Consensus 506 Hsgl~~~~R~~v~~~F~~G-~ikVLVAT~tla~GIDiP~----------------------------------------- 543 (1174)
++.-. +|+.-+- -+.| .-.|-|||+++.+|.||-=
T Consensus 65 NAK~h--erEAeII-AqAG~~GaVTIATNMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (219)
T d1nkta4 65 NAKYH--EQEATII-AVAGRRGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEA 141 (219)
T ss_dssp CSSCH--HHHHHHH-HTTTSTTCEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHT
T ss_pred chhhH--HHHHHHH-HhcccCCcEEeeccccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHH
Confidence 55432 3332222 2233 3369999999999999921
Q ss_pred -----------ceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCC
Q 001047 544 -----------RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 593 (1174)
Q Consensus 544 -----------v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~ 593 (1174)
=-+||- ...--|..-=.|..||+||-| .+|.+.+|.+=.+
T Consensus 142 ~~~~~~V~~~GGL~VIG--------TErHeSrRIDnQLRGRsGRQG--DPGsSrFflSLeD 192 (219)
T d1nkta4 142 SKEAKEVIEAGGLYVLG--------TERHESRRIDNQLRGRSGRQG--DPGESRFYLSLGD 192 (219)
T ss_dssp THHHHHHHHTTSEEEEE--------CSCCSSHHHHHHHHHTSSGGG--CCEEEEEEEETTS
T ss_pred HHHHHHHHhcCCcEEEe--------ccccccccccccccccccccC--CCccceeEEeccH
Confidence 113333 122235555679999999999 8999998887655
No 48
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=97.14 E-value=0.00024 Score=76.71 Aligned_cols=85 Identities=20% Similarity=0.187 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEE
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAN----QRRIFYTTPLKALSNQKFREFRETFGDNNVGLL 234 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~----g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ll 234 (1174)
+++|-|.+|+.. ....++|.|+.|||||.+.+.-+...+.+ ..+++|+++|+++++.+...+.+.++..
T Consensus 1 ~L~~eQ~~av~~--~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~tn~a~~~i~~~~~~~~~~~----- 73 (306)
T d1uaaa1 1 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRK----- 73 (306)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTT-----
T ss_pred CcCHHHHHHHhC--CCCCEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCcHHHHHHHHHHHHHhcCcc-----
Confidence 478999999975 34579999999999998876655544432 3489999999999999988888865531
Q ss_pred eCCCCCCCCCcEEEEcHHHHHHH
Q 001047 235 TGDSAINREAQILIMTTEILRNM 257 (1174)
Q Consensus 235 tGd~~~~~~~~IlV~Tpe~L~~~ 257 (1174)
....+-+.|...+...
T Consensus 74 -------~~~~~~~~t~~~~~~~ 89 (306)
T d1uaaa1 74 -------EARGLMISTFHTLGLD 89 (306)
T ss_dssp -------TTTTSEEEEHHHHHHH
T ss_pred -------ccccceeeehHHHHHH
Confidence 2234556777766443
No 49
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=96.80 E-value=0.001 Score=72.05 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcC----CeEEEEcccHHHHHHHHHHHHHHhCCCeEEEE
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ----RRIFYTTPLKALSNQKFREFRETFGDNNVGLL 234 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g----~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ll 234 (1174)
.+++-|.+++.. .+..++|.|+.|||||.+.+.-+...+..+ .+++++++++.+++.+...+.+..+..
T Consensus 11 ~L~~eQ~~~v~~--~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~~aa~~~~~~~~~~~~~~----- 83 (318)
T d1pjra1 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA----- 83 (318)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG-----
T ss_pred hCCHHHHHHHhC--CCCCEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccHHHHHHHHHHHHhhcccc-----
Confidence 588999999985 345799999999999999887776666543 489999999999999999988865431
Q ss_pred eCCCCCCCCCcEEEEcHHHHHHHH
Q 001047 235 TGDSAINREAQILIMTTEILRNML 258 (1174)
Q Consensus 235 tGd~~~~~~~~IlV~Tpe~L~~~L 258 (1174)
.....|.|...+...+
T Consensus 84 --------~~~~~i~T~hs~~~~~ 99 (318)
T d1pjra1 84 --------AEDVWISTFHSMCVRI 99 (318)
T ss_dssp --------GTTSEEEEHHHHHHHH
T ss_pred --------cccceeecHHHHHHHH
Confidence 1233578887665433
No 50
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=96.43 E-value=0.0026 Score=70.98 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=62.0
Q ss_pred cCCCCCCHHHHHHHHHHHc----C-CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCC
Q 001047 155 IYDFRIDKFQRSSIEAFLR----G-SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDN 229 (1174)
Q Consensus 155 ~~~~~~~~~Q~~ai~~ll~----g-~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~ 229 (1174)
..+|.|.--|-+||..+.+ | +..++.|-||||||++..-.+.+ .++.+|||+|+..+|.|++++|..++++.
T Consensus 7 ~~~~~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~---~~rp~LVVt~n~~~A~qL~~dL~~~l~~~ 83 (413)
T d1t5la1 7 VAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQ---VNKPTLVIAHNKTLAGQLYSELKEFFPHN 83 (413)
T ss_dssp CCSSCCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHH---HTCCEEEECSSHHHHHHHHHHHHHHCTTS
T ss_pred ecCCCCCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHHHHHHH---hCCCEEEEeCCHHHHHHHHHHHHHHcCCC
Confidence 3467788888888877654 4 57899999999999766433332 26679999999999999999999999987
Q ss_pred eEEEEeC
Q 001047 230 NVGLLTG 236 (1174)
Q Consensus 230 ~v~lltG 236 (1174)
.+..+..
T Consensus 84 ~v~~f~~ 90 (413)
T d1t5la1 84 AVEYFVS 90 (413)
T ss_dssp EEEEECC
T ss_pred ceeeccc
Confidence 7766644
No 51
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=95.99 E-value=0.0056 Score=61.86 Aligned_cols=136 Identities=12% Similarity=0.112 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHH----cCC---cEEEEccCCcchHHHHHHHHHHHHhcCC---eEEEEcccHHHHHHHHHHHHHHhCC
Q 001047 159 RIDKFQRSSIEAFL----RGS---SVVVSAPTSSGKTLIAEAAAVATVANQR---RIFYTTPLKALSNQKFREFRETFGD 228 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll----~g~---~vlv~apTGsGKTlv~~~~il~~l~~g~---rvlvl~PtraLa~Q~~~~l~~~~g~ 228 (1174)
.++|||..++..+. +++ .+++.||.|+|||..+...+-..+.... ...-.++. ...+.... .
T Consensus 2 ~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~-------~~~i~~~~-~ 73 (207)
T d1a5ta2 2 RWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRG-------CQLMQAGT-H 73 (207)
T ss_dssp CCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHH-------HHHHHHTC-C
T ss_pred CCCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccch-------hhhhhhcc-c
Confidence 34578877777653 443 4899999999999987665543322111 11111111 11222211 1
Q ss_pred CeEEEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEE
Q 001047 229 NNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQII 308 (1174)
Q Consensus 229 ~~v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI 308 (1174)
..+..+..+.. ...+- .+.++.+..... ......+..+|||||||.|... -...+..++..-++++.+|
T Consensus 74 ~~~~~~~~~~~---~~~i~---~~~ir~l~~~~~----~~~~~~~~kviIide~d~l~~~-a~n~Llk~lEep~~~~~fI 142 (207)
T d1a5ta2 74 PDYYTLAPEKG---KNTLG---VDAVREVTEKLN----EHARLGGAKVVWVTDAALLTDA-AANALLKTLEEPPAETWFF 142 (207)
T ss_dssp TTEEEECCCTT---CSSBC---HHHHHHHHHHTT----SCCTTSSCEEEEESCGGGBCHH-HHHHHHHHHTSCCTTEEEE
T ss_pred cccchhhhhhc---ccccc---cchhhHHhhhhh----hccccCccceEEechhhhhhhh-hhHHHHHHHHhhcccceee
Confidence 22333332211 11221 233333332210 1233457789999999999742 2233334444445556555
Q ss_pred EEccc
Q 001047 309 CLSAT 313 (1174)
Q Consensus 309 ~LSAT 313 (1174)
+.|-.
T Consensus 143 l~t~~ 147 (207)
T d1a5ta2 143 LATRE 147 (207)
T ss_dssp EEESC
T ss_pred eeecC
Confidence 54433
No 52
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=95.92 E-value=0.008 Score=60.44 Aligned_cols=122 Identities=17% Similarity=0.131 Sum_probs=73.9
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc--cHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP--LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEI 253 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P--traLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~ 253 (1174)
-+++++|||+|||+...-.+.....++.++.+++- .|+-+.++.+.+.+.++-. +.... ... .+..
T Consensus 12 vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~-~~~~~--~~~---------~~~~ 79 (207)
T d1ls1a2 12 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVP-VLEVM--DGE---------SPES 79 (207)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCC-EEECC--TTC---------CHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCc-ccccc--ccc---------hhhH
Confidence 35669999999998776666666667777777664 6788888888888877632 22111 110 1111
Q ss_pred HHHHHhcccccccCCCCCCceeEEEEccccccccC-CcHHHHHHHHHHCCCCccEEEEccccCC
Q 001047 254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI-SRGTVWEEIIIYCPKEVQIICLSATVAN 316 (1174)
Q Consensus 254 L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~-~~g~~~e~ii~~l~~~~qiI~LSATl~n 316 (1174)
+...... ...+.+.++|++|=+=+.... ..-..+..+....++.-.++.++||.+.
T Consensus 80 ~~~~~~~-------~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~ 136 (207)
T d1ls1a2 80 IRRRVEE-------KARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ 136 (207)
T ss_dssp HHHHHHH-------HHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH
T ss_pred HHHHHHH-------HHhhccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccch
Confidence 1111000 001346789999988775421 2223444455556666778889999764
No 53
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=95.82 E-value=0.0083 Score=59.87 Aligned_cols=82 Identities=10% Similarity=0.190 Sum_probs=69.6
Q ss_pred HHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcc
Q 001047 193 AAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQS 261 (1174)
Q Consensus 193 ~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~ 261 (1174)
-.|...+.+|.++.|++|..+-+...+..+.+.|++.++++++|..+. +...+|+|+|+ .+..
T Consensus 22 ~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Tt-----vIEv- 95 (211)
T d2eyqa5 22 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIET- 95 (211)
T ss_dssp HHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTGG-
T ss_pred HHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEeh-----hhhh-
Confidence 356777889999999999999999999999999999999999998763 45799999997 3443
Q ss_pred cccccCCCCCCceeEEEEccccccc
Q 001047 262 VGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 262 ~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
...+.+..++||..|++.+
T Consensus 96 ------GiDvpnA~~iiI~~a~rfG 114 (211)
T d2eyqa5 96 ------GIDIPTANTIIIERADHFG 114 (211)
T ss_dssp ------GSCCTTEEEEEETTTTSSC
T ss_pred ------ccCCCCCcEEEEecchhcc
Confidence 4467899999999999954
No 54
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=95.64 E-value=0.0089 Score=70.71 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcC----CeEEEEcccHHHHHHHHHHHHHHhCCCeEEEE
Q 001047 159 RIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQ----RRIFYTTPLKALSNQKFREFRETFGDNNVGLL 234 (1174)
Q Consensus 159 ~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g----~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~ll 234 (1174)
.+++-|++++.. ...+++|.|..|||||.+...-+...+.++ .++++++.|++.++++..++.+.++..
T Consensus 11 ~L~~eQ~~~v~~--~~~~~lV~A~AGSGKT~~lv~ri~~ll~~~~~~p~~Il~ltft~~Aa~ei~~Ri~~~l~~~----- 83 (623)
T g1qhh.1 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA----- 83 (623)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG-----
T ss_pred hcCHHHHHHHcC--CCCCEEEEEeCchHHHHHHHHHHHHHHHcCCCCcccEEEEeccHHHHHHHHHHHHHhcccc-----
Confidence 689999999873 346788999999999999877776665543 489999999999999999999877631
Q ss_pred eCCCCCCCCCcEEEEcHHHHHH
Q 001047 235 TGDSAINREAQILIMTTEILRN 256 (1174)
Q Consensus 235 tGd~~~~~~~~IlV~Tpe~L~~ 256 (1174)
...+-|.|-..|..
T Consensus 84 --------~~~~~v~TfHs~~~ 97 (623)
T g1qhh.1 84 --------AEDVWISTFHSMCV 97 (623)
T ss_dssp --------GTTSEEEEHHHHHH
T ss_pred --------cCCCEEEcHHHHHH
Confidence 12456888876653
No 55
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=95.56 E-value=0.04 Score=55.06 Aligned_cols=133 Identities=11% Similarity=0.145 Sum_probs=74.2
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTT 251 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tp 251 (1174)
++.+++++|||+|||+...-.+......|.++.+++ ..|+=+.++.+.+.+.++- -++......+ -.
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i---~~~~~~~~~d--------~~ 74 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSI---PVIQGPEGTD--------PA 74 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTC---CEECCCTTCC--------HH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCc---eEEeccCCcc--------HH
Confidence 356788999999999887666555556677666654 3478888888888887772 2222211100 01
Q ss_pred HHHHHHHhcccccccCCCCCCceeEEEEccccccccC-CcHHHHHHHHHHC------CCCccEEEEccccCCh--HHHHH
Q 001047 252 EILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI-SRGTVWEEIIIYC------PKEVQIICLSATVANA--DELAG 322 (1174)
Q Consensus 252 e~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~-~~g~~~e~ii~~l------~~~~qiI~LSATl~n~--~~~~~ 322 (1174)
..+.+.+.. ....+.++|+||=+=+.... ..-..+..+.... .+.-.++.++||.... .++..
T Consensus 75 ~~~~~~~~~--------~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~ 146 (207)
T d1okkd2 75 ALAYDAVQA--------MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKK 146 (207)
T ss_dssp HHHHHHHHH--------HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHH
T ss_pred HHHHHHHHH--------HHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHH
Confidence 122222110 01236789999988765421 1112222222211 2344578899998642 34444
Q ss_pred HHh
Q 001047 323 WIG 325 (1174)
Q Consensus 323 ~l~ 325 (1174)
++.
T Consensus 147 ~~~ 149 (207)
T d1okkd2 147 FHE 149 (207)
T ss_dssp HHH
T ss_pred hhh
Confidence 444
No 56
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=95.23 E-value=0.054 Score=54.17 Aligned_cols=121 Identities=9% Similarity=0.190 Sum_probs=68.7
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc-c-cHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHHH
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT-P-LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEIL 254 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~-P-traLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~L 254 (1174)
+++++|||+|||+...-.+.....++.++.+++ - .|+=+.++.+.+.+.++ +.+.......+ -...+
T Consensus 12 i~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~---v~~~~~~~~~d--------~~~~l 80 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN---IPVIAQHTGAD--------SASVI 80 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTT---CCEECCSTTCC--------HHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcC---CcccccccCCC--------HHHHH
Confidence 567999999999887766655555666665554 3 37778888888888776 22222221110 11223
Q ss_pred HHHHhcccccccCCCCCCceeEEEEccccccccC-CcHHHHHHHHHHC------CCCccEEEEccccCC
Q 001047 255 RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI-SRGTVWEEIIIYC------PKEVQIICLSATVAN 316 (1174)
Q Consensus 255 ~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~-~~g~~~e~ii~~l------~~~~qiI~LSATl~n 316 (1174)
.+.+.. ...+++++|+||=+=+.... ..-..+..+.... .+.-.++.++||...
T Consensus 81 ~~~~~~--------a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~ 141 (211)
T d2qy9a2 81 FDAIQA--------AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 141 (211)
T ss_dssp HHHHHH--------HHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTH
T ss_pred HHHHHH--------HHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCc
Confidence 332221 11346899999988664311 1112233333322 134567889999853
No 57
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=95.18 E-value=0.037 Score=55.80 Aligned_cols=74 Identities=24% Similarity=0.456 Sum_probs=48.1
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILR 255 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~L~ 255 (1174)
.+++.||+|+|||-......-+...++..++|+ +...+..+....+.. + ....+.
T Consensus 38 ~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~---------------------~~~~~~ 92 (213)
T d1l8qa2 38 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS-SADDFAQAMVEHLKK---G---------------------TINEFR 92 (213)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEE-EHHHHHHHHHHHHHH---T---------------------CHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHHHhccCccceEEe-chHHHHHHHHHHHHc---c---------------------chhhHH
Confidence 489999999999987765555555566666555 555555555544433 0 111222
Q ss_pred HHHhcccccccCCCCCCceeEEEEcccccccc
Q 001047 256 NMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287 (1174)
Q Consensus 256 ~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d 287 (1174)
.. +...++|+||++|.+..
T Consensus 93 ~~-------------~~~~dll~iDDi~~i~~ 111 (213)
T d1l8qa2 93 NM-------------YKSVDLLLLDDVQFLSG 111 (213)
T ss_dssp HH-------------HHTCSEEEEECGGGGTT
T ss_pred HH-------------HhhccchhhhhhhhhcC
Confidence 22 23688999999999874
No 58
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=94.96 E-value=0.061 Score=53.91 Aligned_cols=120 Identities=13% Similarity=0.178 Sum_probs=67.8
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT--PLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEI 253 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~--PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~ 253 (1174)
.+++++|||+|||+...-.+.....++.++.+++ ..|+=+.++.+.+.+.++ +-+.......+ +..
T Consensus 13 vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~---i~~~~~~~~~d---------~~~ 80 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVG---ATVISHSEGAD---------PAA 80 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHT---CEEECCSTTCC---------HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcC---ccccccCCCCc---------HHH
Confidence 4677999999999887666655566666655543 367888888888888776 33332222110 111
Q ss_pred -HHHHHhcccccccCCCCCCceeEEEEccccccccC-CcHHHHHHHHHHCC------CCccEEEEccccC
Q 001047 254 -LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDI-SRGTVWEEIIIYCP------KEVQIICLSATVA 315 (1174)
Q Consensus 254 -L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~-~~g~~~e~ii~~l~------~~~qiI~LSATl~ 315 (1174)
+..... ....++.++|+||=+=+.... ..-..+..+..... +.-.++.++||..
T Consensus 81 ~~~~~~~--------~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~ 142 (213)
T d1vmaa2 81 VAFDAVA--------HALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG 142 (213)
T ss_dssp HHHHHHH--------HHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH
T ss_pred HHHHHHH--------HHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC
Confidence 111111 011347889999988664311 11122233333221 2346789999975
No 59
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}
Probab=94.49 E-value=0.064 Score=53.26 Aligned_cols=111 Identities=9% Similarity=0.116 Sum_probs=60.3
Q ss_pred HHHHHHHHHcC---CcEEEEccCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeC
Q 001047 164 QRSSIEAFLRG---SSVVVSAPTSSGKTLIAEAAAVATVAN----QRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236 (1174)
Q Consensus 164 Q~~ai~~ll~g---~~vlv~apTGsGKTlv~~~~il~~l~~----g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltG 236 (1174)
|.+.+..+.+. .++++.||.|+|||..+...+ ..+.. ..-++++.|-
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~-~~i~~~~~~h~D~~~i~~~------------------------- 55 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELP-EYVEKFPPKASDVLEIDPE------------------------- 55 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHH-HHHHTSCCCTTTEEEECCS-------------------------
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHH-HHHhccccCCCCEEEEeCC-------------------------
Confidence 56667665543 489999999999998876443 22211 1123333331
Q ss_pred CCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEcccc
Q 001047 237 DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 237 d~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl 314 (1174)
+..| .-+.++++..... ........+++|+||||+|... -...+..++.--|.+..+++.|..+
T Consensus 56 ------~~~I---~Id~IR~i~~~~~----~~~~~~~~KviIId~ad~l~~~-aqNaLLK~LEEPp~~t~fiLit~~~ 119 (198)
T d2gnoa2 56 ------GENI---GIDDIRTIKDFLN----YSPELYTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYAVIVLNTRRW 119 (198)
T ss_dssp ------SSCB---CHHHHHHHHHHHT----SCCSSSSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred ------cCCC---CHHHHHHHHHHHh----hCcccCCCEEEEEeCccccchh-hhhHHHHHHhCCCCCceeeeccCCh
Confidence 0111 1223333222110 1233457789999999999742 2223344444445677777665554
No 60
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=94.24 E-value=0.01 Score=61.43 Aligned_cols=39 Identities=10% Similarity=0.242 Sum_probs=25.2
Q ss_pred CceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 272 ~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
....++|+||+|.|... ....+..++...+.++.+|+.+
T Consensus 130 ~~~~iiiide~d~l~~~-~~~~l~~~~e~~~~~~~~Il~t 168 (252)
T d1sxje2 130 HRYKCVIINEANSLTKD-AQAALRRTMEKYSKNIRLIMVC 168 (252)
T ss_dssp -CCEEEEEECTTSSCHH-HHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCceEEEeccccccccc-cchhhhcccccccccccceeee
Confidence 45679999999998643 3333455566666666666544
No 61
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}
Probab=93.90 E-value=0.029 Score=60.35 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=38.3
Q ss_pred HHHHHHHHH-HHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHH
Q 001047 162 KFQRSSIEA-FLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214 (1174)
Q Consensus 162 ~~Q~~ai~~-ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraL 214 (1174)
+.+...+.. +..+++++|+|+||||||+.. .+++..+....+++.+--+.+|
T Consensus 153 ~~~~~~l~~~v~~~~nili~G~tgSGKTT~l-~al~~~i~~~~rivtiEd~~El 205 (323)
T d1g6oa_ 153 EQAISAIKDGIAIGKNVIVCGGTGSGKTTYI-KSIMEFIPKEERIISIEDTEEI 205 (323)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESTTSSHHHHH-HHHGGGSCTTCCEEEEESSCCC
T ss_pred HHHHHHHHHHHHhCCCEEEEeeccccchHHH-HHHhhhcccccceeeccchhhh
Confidence 334444544 456789999999999999874 4556666677889998887776
No 62
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}
Probab=93.83 E-value=0.1 Score=48.43 Aligned_cols=89 Identities=18% Similarity=0.146 Sum_probs=56.4
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHHHHH
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRN 256 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~L~~ 256 (1174)
-++.||..||||.-.+--+......|++++++-|... .++++ .+....|. .-..+.+.....+.+
T Consensus 5 ~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~D----------~R~~~-~i~s~~g~----~~~~~~~~~~~~~~~ 69 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID----------TRSIR-NIQSRTGT----SLPSVEVESAPEILN 69 (139)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----------GGGCS-SCCCCCCC----SSCCEEESSTHHHHH
T ss_pred EEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEccc----------ccccc-eEEcccCc----eeeeEEeccchhhHH
Confidence 4789999999998877776666667889999999642 11222 12111111 123355555555555
Q ss_pred HHhcccccccCCCCCCceeEEEEcccccccc
Q 001047 257 MLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287 (1174)
Q Consensus 257 ~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d 287 (1174)
.+.. .....++++|.||||+.+.+
T Consensus 70 ~~~~-------~~~~~~~dvI~IDE~QFf~d 93 (139)
T d2b8ta1 70 YIMS-------NSFNDETKVIGIDEVQFFDD 93 (139)
T ss_dssp HHHS-------TTSCTTCCEEEECSGGGSCT
T ss_pred HHHh-------hccccCcCEEEechhhhcch
Confidence 5442 23346889999999999853
No 63
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}
Probab=93.82 E-value=0.03 Score=52.42 Aligned_cols=88 Identities=22% Similarity=0.301 Sum_probs=52.8
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEI 253 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~ 253 (1174)
|.--++.||..||||.-.+--+......|.+++++-|... .+++...+....|. .-..+.+.+...
T Consensus 7 G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~~~D----------~Ry~~~~i~sh~g~----~~~a~~~~~~~~ 72 (141)
T d1xx6a1 7 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEID----------NRYSKEDVVSHMGE----KEQAVAIKNSRE 72 (141)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-----------------CEEECTTSC----EEECEEESSSTH
T ss_pred eeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEEeccc----------cccccceeeecccc----eEEEEEecchhh
Confidence 3445789999999998877777666667889999999642 12333222211111 112244444333
Q ss_pred HHHHHhcccccccCCCCCCceeEEEEcccccccc
Q 001047 254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSD 287 (1174)
Q Consensus 254 L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d 287 (1174)
+...+ ..++++|.|||||.+.+
T Consensus 73 ~~~~~------------~~~~dvI~IDE~QFf~d 94 (141)
T d1xx6a1 73 ILKYF------------EEDTEVIAIDEVQFFDD 94 (141)
T ss_dssp HHHHC------------CTTCSEEEECSGGGSCT
T ss_pred hhhhh------------cccccEEEEeehhhccc
Confidence 33322 34689999999999864
No 64
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=93.78 E-value=0.19 Score=49.97 Aligned_cols=121 Identities=8% Similarity=0.085 Sum_probs=63.9
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc--cHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP--LKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEI 253 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P--traLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~ 253 (1174)
-+++++|||+|||+...-.+.....+|.++.+++= .|.=+.++.+.+.+.+|- .+...... .+. ...
T Consensus 14 vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v---~~~~~~~~----~~~----~~~ 82 (211)
T d1j8yf2 14 VIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGV---PVYGEPGE----KDV----VGI 82 (211)
T ss_dssp EEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTC---CEECCTTC----CCH----HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCc---ceeecccc----hhh----hHH
Confidence 35668999999998766655555556666655543 467777777888887762 22221111 000 001
Q ss_pred HHHHHhcccccccCCCCCCceeEEEEccccccccCCcHH---HHHHHHHHCCCCccEEEEccccC
Q 001047 254 LRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT---VWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 254 L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~---~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
+.+.+.. ....+.++|+||=+=+........ .+..+.....+.-.++.++||..
T Consensus 83 ~~~a~~~--------~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~ 139 (211)
T d1j8yf2 83 AKRGVEK--------FLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG 139 (211)
T ss_dssp HHHHHHH--------HHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred HHHHHHH--------hhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccC
Confidence 1111110 012468899999875532112222 33444445555566788999975
No 65
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=93.77 E-value=0.21 Score=50.78 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=23.5
Q ss_pred CceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 272 ~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
....+|||||||.|... ....+..++...+.+..+|+.+
T Consensus 114 ~~~kviiIde~d~l~~~-~q~~Llk~lE~~~~~~~~il~t 152 (239)
T d1njfa_ 114 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 152 (239)
T ss_dssp SSSEEEEEETGGGSCHH-HHHHHHHHHHSCCTTEEEEEEE
T ss_pred CCCEEEEEECcccCCHH-HHHHHHHHHhcCCCCeEEEEEc
Confidence 45679999999998632 2233444444444555555543
No 66
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.40 E-value=0.12 Score=47.71 Aligned_cols=39 Identities=21% Similarity=0.106 Sum_probs=30.7
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Ptr 212 (1174)
|.--++.||..||||.-.+-.+......|++++++-|..
T Consensus 2 G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~~ 40 (133)
T d1xbta1 2 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 40 (133)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred cEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEeccc
Confidence 344578999999999877766666666788999999853
No 67
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=93.27 E-value=0.3 Score=50.29 Aligned_cols=80 Identities=14% Similarity=0.089 Sum_probs=62.7
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
.+.++++.+++.--+...+..+.. +...+...++.+||+++..+|..+..
T Consensus 131 ~g~q~~~m~Pt~~La~Qh~~~~~~------------------------------~f~~~~~~v~~l~~~~~~~~r~~~~~ 180 (264)
T d1gm5a3 131 AGFQTAFMVPTSILAIQHYRRTVE------------------------------SFSKFNIHVALLIGATTPSEKEKIKS 180 (264)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHH------------------------------HHTCSSCCEEECCSSSCHHHHHHHHH
T ss_pred cccceeEEeehHhhhHHHHHHHHH------------------------------hhhhccccceeeccccchHHHHHHHH
Confidence 346899999998777766655541 11222336899999999999999999
Q ss_pred HHhcCCceEEEechhhh-hcCCcCCceEEEe
Q 001047 520 LFQRGLVKVVFATETLA-AGINMPARTAVLS 549 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~tla-~GIDiP~v~vVI~ 549 (1174)
...+|+++|+|+|-.+- ..+.+.+..+||.
T Consensus 181 ~~~~g~~~iiIGThsl~~~~~~f~~Lglvii 211 (264)
T d1gm5a3 181 GLRNGQIDVVIGTHALIQEDVHFKNLGLVII 211 (264)
T ss_dssp HHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred HHHCCCCCEEEeehHHhcCCCCccccceeee
Confidence 99999999999997664 5688888888776
No 68
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=92.73 E-value=0.091 Score=58.12 Aligned_cols=75 Identities=27% Similarity=0.312 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHH----HcCC-cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEE
Q 001047 159 RIDKFQRSSIEAF----LRGS-SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGL 233 (1174)
Q Consensus 159 ~~~~~Q~~ai~~l----l~g~-~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~l 233 (1174)
+|+--|-+||..+ .+|+ .+.+.|-||||||++.... ... .++.+|||+|+...|.++++++..++++..+..
T Consensus 8 ~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l-~~~--~~rp~LvVt~~~~~A~~l~~dL~~~l~~~~v~~ 84 (408)
T d1c4oa1 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKV-IEA--LGRPALVLAPNKILAAQLAAEFRELFPENAVEY 84 (408)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHH-HHH--HTCCEEEEESSHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-HHH--hCCCEEEEeCCHHHHHHHHHHHHHhcCccceee
Confidence 4555676666654 4554 4789999999999765432 222 256799999999999999999999998876666
Q ss_pred EeC
Q 001047 234 LTG 236 (1174)
Q Consensus 234 ltG 236 (1174)
+..
T Consensus 85 fp~ 87 (408)
T d1c4oa1 85 FIS 87 (408)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 69
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=92.56 E-value=0.13 Score=51.65 Aligned_cols=42 Identities=7% Similarity=0.120 Sum_probs=26.9
Q ss_pred CceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEcccc
Q 001047 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 272 ~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl 314 (1174)
....+||+||+|.+.+... ..+...+...+....+++.+...
T Consensus 100 ~~~kviiiDe~d~~~~~~~-~~ll~~~e~~~~~~~~i~~~~~~ 141 (224)
T d1sxjb2 100 GKHKIVILDEADSMTAGAQ-QALRRTMELYSNSTRFAFACNQS 141 (224)
T ss_dssp TCCEEEEEESGGGSCHHHH-HTTHHHHHHTTTTEEEEEEESCG
T ss_pred cceEEEEEecccccchhHH-HHHhhhccccccceeeeeccCch
Confidence 3567999999999985432 23334455556666666666554
No 70
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=91.54 E-value=0.74 Score=46.26 Aligned_cols=82 Identities=6% Similarity=-0.007 Sum_probs=65.1
Q ss_pred CCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHH
Q 001047 439 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIE 518 (1174)
Q Consensus 439 ~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~ 518 (1174)
..+.++++.+|+..-+...+..+++. ...+...+..+||+++..+|..+.
T Consensus 102 ~~g~qv~~l~Pt~~La~Q~~~~~~~~------------------------------~~~~~~~v~~l~~~~~~~~~~~~~ 151 (233)
T d2eyqa3 102 DNHKQVAVLVPTTLLAQQHYDNFRDR------------------------------FANWPVRIEMISRFRSAKEQTQIL 151 (233)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHH------------------------------STTTTCCEEEESTTSCHHHHHHHH
T ss_pred HcCCceEEEccHHHhHHHHHHHHHHH------------------------------HhhCCCEEEeccCcccchhHHHHH
Confidence 35678999999988777776666521 112233689999999999999999
Q ss_pred HHHhcCCceEEEechhhh-hcCCcCCceEEEec
Q 001047 519 ELFQRGLVKVVFATETLA-AGINMPARTAVLSS 550 (1174)
Q Consensus 519 ~~F~~G~ikVLVAT~tla-~GIDiP~v~vVI~~ 550 (1174)
..+.+|.++|||.|-.+- ..+.+++..+||..
T Consensus 152 ~~~~~g~~~iviGths~l~~~~~f~~LgLiIiD 184 (233)
T d2eyqa3 152 AEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVD 184 (233)
T ss_dssp HHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEE
T ss_pred HHHhCCCCCEEEeehhhhccCCccccccceeee
Confidence 999999999999998655 47888999988874
No 71
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=91.42 E-value=0.12 Score=52.00 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=24.1
Q ss_pred CCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047 271 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 311 (1174)
Q Consensus 271 l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS 311 (1174)
..+..+||+||+|.+..... ..+..++...+....+++.+
T Consensus 97 ~~~~kiiiiDe~d~~~~~~~-~~Ll~~le~~~~~~~~~~~~ 136 (227)
T d1sxjc2 97 SKGFKLIILDEADAMTNAAQ-NALRRVIERYTKNTRFCVLA 136 (227)
T ss_dssp SCSCEEEEETTGGGSCHHHH-HHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEEeccccchhhHH-HHHHHHhhhcccceeecccc
Confidence 34567999999999875433 33444455555555444443
No 72
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Probab=91.37 E-value=0.083 Score=50.80 Aligned_cols=52 Identities=12% Similarity=0.078 Sum_probs=29.1
Q ss_pred CceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEccccCChHHHHHHH
Q 001047 272 FDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI 324 (1174)
Q Consensus 272 ~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~~~l 324 (1174)
.+.+++++||++..... ....+..+...+......++++..-.....+.+-+
T Consensus 98 ~~~~vlllDE~~~~~~~-~~~~~~~l~~~l~~~~~~il~~~h~~~~~~~~~~i 149 (178)
T d1ye8a1 98 DRRKVIIIDEIGKMELF-SKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp CTTCEEEECCCSTTGGG-CHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHH
T ss_pred cCCCceeecCCCccchh-hHHHHHHHHHHhccCCCEEEEEEccHHHHHhhceE
Confidence 46789999999876532 23444455555554444555555443333444333
No 73
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=89.89 E-value=0.57 Score=46.85 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=17.5
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++++||+|+|||+.+-..+
T Consensus 46 ~~lll~Gp~G~GKTtla~~ia 66 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALA 66 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 479999999999998876543
No 74
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}
Probab=89.23 E-value=0.2 Score=55.22 Aligned_cols=44 Identities=16% Similarity=0.360 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHcCC--cEEEEccCCcchHHHHHHHHHHHHhc
Q 001047 157 DFRIDKFQRSSIEAFLRGS--SVVVSAPTSSGKTLIAEAAAVATVAN 201 (1174)
Q Consensus 157 ~~~~~~~Q~~ai~~ll~g~--~vlv~apTGsGKTlv~~~~il~~l~~ 201 (1174)
.+.+.+.|.+.+..+.... -+|++||||||||+.... ++..+..
T Consensus 139 ~LG~~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl~~-~l~~~~~ 184 (401)
T d1p9ra_ 139 SLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYA-GLQELNS 184 (401)
T ss_dssp GSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHH-HHHHHCC
T ss_pred hhcccHHHHHHHHHHHhhhhceEEEEcCCCCCccHHHHH-HhhhhcC
Confidence 3568899999998887553 588999999999987654 4555543
No 75
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=88.53 E-value=0.36 Score=49.10 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=17.2
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
+.+++.||+|+|||.++-..+
T Consensus 53 ~~lll~GPpG~GKTt~a~~la 73 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVA 73 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 469999999999998775443
No 76
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=88.04 E-value=0.2 Score=50.77 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=35.8
Q ss_pred HHHHHc-----CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 168 IEAFLR-----GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 168 i~~ll~-----g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
++.++. |..++|.|++|+|||..++..+...+.++.+++|++-
T Consensus 15 LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~ 62 (242)
T d1tf7a2 15 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY 62 (242)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeec
Confidence 455554 4678999999999999999988888888888998874
No 77
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}
Probab=87.83 E-value=0.19 Score=48.04 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=22.7
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeE
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRI 205 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rv 205 (1174)
++++|.||+|+|||+.....+......+.++
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence 6899999999999997765554444455433
No 78
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}
Probab=86.46 E-value=0.28 Score=54.53 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=35.0
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKAL 214 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraL 214 (1174)
..++++|.|+||||||..+...+.+.+..|..++|+=|.-++
T Consensus 49 ~~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~kge~ 90 (433)
T d1e9ra_ 49 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDM 90 (433)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHH
T ss_pred ccceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeCChhH
Confidence 347899999999999988766677777888899999897654
No 79
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}
Probab=85.40 E-value=0.94 Score=42.43 Aligned_cols=133 Identities=15% Similarity=0.056 Sum_probs=67.9
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILR 255 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~L~ 255 (1174)
-+.|.-..|=|||.+++=-+++++..|.+|+++.=.|--...=...+.+..+ ..+. ..|........ ..+.-.
T Consensus 4 ~i~vytG~GKGKTTAAlG~alRA~G~G~rV~ivQFlKg~~~~ge~~~~~~~~-~~~~-~~~~~~~~~~~-----~~e~~~ 76 (157)
T d1g5ta_ 4 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHG-VEFQ-VMATGFTWETQ-----NREADT 76 (157)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGT-CEEE-ECCTTCCCCGG-----GHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHhcCCCEEEEEEEecCCcccchhhhhcccC-cEEE-EecCCCcccCC-----ChHHHH
Confidence 3566777899999999999999999999999997665221111111222222 2222 22221111100 011111
Q ss_pred HHHhcccccccCCCCCCceeEEEEccccccccCCc--HHHHHHHHHHCCCCccEEEEccccC
Q 001047 256 NMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISR--GTVWEEIIIYCPKEVQIICLSATVA 315 (1174)
Q Consensus 256 ~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~--g~~~e~ii~~l~~~~qiI~LSATl~ 315 (1174)
...............-..+++||+||+-...+.+. ...+..++...|...-+|+.--.+|
T Consensus 77 ~~a~~~~~~a~~~~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p 138 (157)
T d1g5ta_ 77 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 138 (157)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHhhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 11000000000111234689999999987764432 2344455666676666555444443
No 80
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=84.13 E-value=0.3 Score=51.73 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=17.9
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
..+.+++.||||+|||+.+-.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAka 68 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARR 68 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 457899999999999988753
No 81
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=83.27 E-value=3 Score=40.28 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=56.7
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHh-------cCCeEEEEcccHHHH-----HHHHHHHHHHhC-----CCeEEEEeCC
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVA-------NQRRIFYTTPLKALS-----NQKFREFRETFG-----DNNVGLLTGD 237 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~-------~g~rvlvl~PtraLa-----~Q~~~~l~~~~g-----~~~v~lltGd 237 (1174)
.|+++.+|.|.|||.+..-.+..... .+++++.+-+.+-++ -|+.++++..+. .-++-++..+
T Consensus 44 ~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfIDe 123 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDE 123 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEET
T ss_pred CCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcch
Confidence 59999999999999887655544332 234555554444332 134344433211 1123332221
Q ss_pred C-----------CC-----------CCCCc-EEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccc
Q 001047 238 S-----------AI-----------NREAQ-ILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283 (1174)
Q Consensus 238 ~-----------~~-----------~~~~~-IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH 283 (1174)
. .. ..+-. |.-+||+-++.++... ....+.+..|.++|-.
T Consensus 124 ih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~~~e~d------~aL~rrF~~I~V~Ep~ 186 (195)
T d1jbka_ 124 LHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKD------AALERRFQKVFVAEPS 186 (195)
T ss_dssp GGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTC------HHHHTTEEEEECCCCC
T ss_pred HHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCHHHHHHHHHcC------HHHHhcCCEeecCCCC
Confidence 1 00 12233 4568888888887763 3345678888888853
No 82
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=83.00 E-value=0.22 Score=55.59 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=18.0
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
..+|+|+.||||+|||+.+-.
T Consensus 48 ~ksNILliGPTGvGKTlLAr~ 68 (443)
T d1g41a_ 48 TPKNILMIGPTGVGKTEIARR 68 (443)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred ccccEEEECCCCCCHHHHHHH
Confidence 347999999999999988764
No 83
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=82.33 E-value=2 Score=40.78 Aligned_cols=77 Identities=10% Similarity=0.053 Sum_probs=59.4
Q ss_pred HHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhccc
Q 001047 194 AAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSV 262 (1174)
Q Consensus 194 ~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~ 262 (1174)
.+.+...+|.++||.|+++.-+..+...|.+ . ++.+..++|+.+. +...+|+|+|. ++.
T Consensus 23 ~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~-~-Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~-----v~~--- 92 (174)
T d1c4oa2 23 GIRERAARGERTLVTVLTVRMAEELTSFLVE-H-GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLR--- 92 (174)
T ss_dssp HHHHHHHTTCEEEEECSSHHHHHHHHHHHHH-T-TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCC---
T ss_pred HHHHHHhcCCcEEEEEcchhHHHHHHHHHHh-c-CCceEEEecccchHHHHHHHHHHHCCCeEEEEeee-----eee---
Confidence 3455567889999999999999999999998 3 3678999998863 35789999995 333
Q ss_pred ccccCCCCCCceeEEEEccccc
Q 001047 263 GMVSSESGLFDVDVIVLDEVHY 284 (1174)
Q Consensus 263 ~~~~~~~~l~~v~lVIiDEaH~ 284 (1174)
....+.++++||+=.++.
T Consensus 93 ----~GiDip~V~~Vi~~~~~~ 110 (174)
T d1c4oa2 93 ----EGLDIPEVSLVAILDADK 110 (174)
T ss_dssp ----TTCCCTTEEEEEETTTTS
T ss_pred ----eeccCCCCcEEEEecccc
Confidence 345678999999855544
No 84
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}
Probab=82.25 E-value=0.56 Score=48.36 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=31.4
Q ss_pred HHcCCcEEEEccCCcchHHHHHHHHHHH-HhcCCeEEEEcc
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEAAAVAT-VANQRRIFYTTP 210 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~~il~~-l~~g~rvlvl~P 210 (1174)
+..|.-++|.|+||+|||..+...+.+. ...|.+++|++.
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~ 72 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence 4456789999999999998777766654 356888999875
No 85
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}
Probab=81.76 E-value=0.38 Score=44.69 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=18.6
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++++.||.|||||+++-..+
T Consensus 2 ~k~I~l~G~~GsGKSTvak~La 23 (169)
T d1kaga_ 2 KRNIFLVGPMGAGKSTIGRQLA 23 (169)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999887554
No 86
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=80.81 E-value=4.9 Score=40.81 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=60.8
Q ss_pred HHHHHHHcC--CcEEEEccCCcchHHHHHHHHHHHHh-------cCCeEEEEcccHHHHH-----HHHHHHHHHh----C
Q 001047 166 SSIEAFLRG--SSVVVSAPTSSGKTLIAEAAAVATVA-------NQRRIFYTTPLKALSN-----QKFREFRETF----G 227 (1174)
Q Consensus 166 ~ai~~ll~g--~~vlv~apTGsGKTlv~~~~il~~l~-------~g~rvlvl~PtraLa~-----Q~~~~l~~~~----g 227 (1174)
+.+..+.+. .|++++||.|.|||.+..-.+..... .+.+++.+.+.+-++. ++.+++...+ .
T Consensus 29 ~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~ 108 (268)
T d1r6bx2 29 RAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ 108 (268)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS
T ss_pred HHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCccchhHHHHHHHHHHHhhc
Confidence 344444432 58999999999999887665443332 2346666666554432 2222232221 1
Q ss_pred CCeEEEEeCCCC----------------------C-CCCCc-EEEEcHHHHHHHHhcccccccCCCCCCceeEEEEcccc
Q 001047 228 DNNVGLLTGDSA----------------------I-NREAQ-ILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVH 283 (1174)
Q Consensus 228 ~~~v~lltGd~~----------------------~-~~~~~-IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH 283 (1174)
.-++-++..+.. . .++-. |.-+||+-+...+.. .....+.+..|-|+|-.
T Consensus 109 ~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIgatT~eey~~~~e~------d~al~rrF~~I~V~Eps 182 (268)
T d1r6bx2 109 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEK------DRALARRFQKIDITEPS 182 (268)
T ss_dssp SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCC------TTSSGGGEEEEECCCCC
T ss_pred cCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCCCCeEEEeCCHHHHHHHHhh------cHHHHhhhcccccCCCC
Confidence 112333322210 0 11233 456788888766654 34456789999999876
Q ss_pred c
Q 001047 284 Y 284 (1174)
Q Consensus 284 ~ 284 (1174)
.
T Consensus 183 ~ 183 (268)
T d1r6bx2 183 I 183 (268)
T ss_dssp H
T ss_pred H
Confidence 4
No 87
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Probab=79.26 E-value=0.47 Score=51.33 Aligned_cols=19 Identities=47% Similarity=0.784 Sum_probs=16.5
Q ss_pred CcEEEEccCCcchHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~ 193 (1174)
.++|..||||+|||.++-.
T Consensus 69 ~niLfiGPTGvGKTElAk~ 87 (364)
T d1um8a_ 69 SNILLIGPTGSGKTLMAQT 87 (364)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred cceeeeCCCCccHHHHHHH
Confidence 6899999999999987743
No 88
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=78.77 E-value=0.4 Score=45.35 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=17.7
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.|+-+++.||+|||||+++-.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~ 23 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEA 23 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 567788999999999998653
No 89
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}
Probab=78.61 E-value=0.89 Score=42.45 Aligned_cols=35 Identities=20% Similarity=0.070 Sum_probs=26.1
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
.+.|+|+.|||||+.....+-..-.+|.++.++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~ 38 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 38 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecc
Confidence 46789999999999877665554456777777654
No 90
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}
Probab=77.66 E-value=0.99 Score=46.26 Aligned_cols=50 Identities=26% Similarity=0.312 Sum_probs=39.7
Q ss_pred HHHHHHc-C-----CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHH
Q 001047 167 SIEAFLR-G-----SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216 (1174)
Q Consensus 167 ai~~ll~-g-----~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~ 216 (1174)
+++.++. | +-+.+.+|+|+|||..++..+.....++..++|+----++..
T Consensus 41 ~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~ 96 (263)
T d1u94a1 41 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP 96 (263)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred HHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCH
Confidence 6777774 4 578899999999999999998888888889888755444433
No 91
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=77.12 E-value=0.69 Score=46.59 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=30.6
Q ss_pred HHHHHHcC-----CcEEEEccCCcchHHHHHHHHHHHHhc------CCeEEEEcc
Q 001047 167 SIEAFLRG-----SSVVVSAPTSSGKTLIAEAAAVATVAN------QRRIFYTTP 210 (1174)
Q Consensus 167 ai~~ll~g-----~~vlv~apTGsGKTlv~~~~il~~l~~------g~rvlvl~P 210 (1174)
.+..++.| +-++|.||+|+|||+.++..+.+...+ +..++|+.=
T Consensus 24 ~LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~ 78 (254)
T d1pzna2 24 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 78 (254)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred HHHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEec
Confidence 34555544 678999999999999888777665432 456666643
No 92
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=77.03 E-value=0.9 Score=43.03 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=23.6
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
++-+++.|++|||||++.-...-..-..+..+.++
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 35 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV 35 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 36688999999999998765443332345555544
No 93
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=76.77 E-value=1.1 Score=45.25 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=30.6
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhc--CCeEEEE-cccHHHHHHHHHHHHHHhC
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVAN--QRRIFYT-TPLKALSNQKFREFRETFG 227 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~--g~rvlvl-~PtraLa~Q~~~~l~~~~g 227 (1174)
.++++.||+|+|||.++-. +.+.+.. +.+++++ +.......+.+..+...++
T Consensus 44 ~~lll~GppGtGKT~l~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRK-LWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLN 98 (276)
T ss_dssp CEEEEECCTTSSHHHHHHH-HHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTT
T ss_pred CceEEECCCCCCHHHHHHH-HHHHHhcccCCcEEEecchhhhhhhhhhhhhHHhhh
Confidence 5899999999999988754 4455543 2234433 2223344455555554443
No 94
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}
Probab=76.65 E-value=0.9 Score=44.54 Aligned_cols=36 Identities=28% Similarity=0.189 Sum_probs=27.8
Q ss_pred CcEEEEcc-CCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 175 SSVVVSAP-TSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 175 ~~vlv~ap-TGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
|.++|++- ||.|||++....+.....+|.+|+++=|
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~ 38 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence 45677777 7999999987766666678889998743
No 95
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}
Probab=76.28 E-value=0.67 Score=43.62 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=18.1
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
+.++++.||+|||||+++-...
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~La 26 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEMIA 26 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHH
Confidence 4579999999999999886543
No 96
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=76.21 E-value=1.6 Score=48.33 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=42.8
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcC------------CeEEEEcccHHHHHHHHHHHHHHhC
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQ------------RRIFYTTPLKALSNQKFREFRETFG 227 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g------------~rvlvl~PtraLa~Q~~~~l~~~~g 227 (1174)
..+||.|.-|||||.+...-++..+..+ ..+|+|+=|+.-|.++..++.+.++
T Consensus 17 g~~lv~A~AGsGKT~~l~~r~~~ll~~~~~~~~~~~~~~~~~IL~lTFT~kAA~Emk~RI~~~L~ 81 (485)
T d1w36b1 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (485)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCchHHHHHHHHHHHHHHhhCcccccccCCCCcccEeEeccHHHHHHHHHHHHHHHHH
Confidence 5799999999999988777777666432 2599999999999999888877654
No 97
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=76.16 E-value=4.8 Score=40.23 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=17.4
Q ss_pred cCCcEEEEccCCcchHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~ 194 (1174)
.++.++|.||.|+|||......
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~ 49 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIG 49 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHH
Confidence 3467889999999999776543
No 98
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=76.14 E-value=0.63 Score=43.67 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=17.6
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++++||.|||||+++....
T Consensus 5 ~~I~i~G~pGsGKTTia~~La 25 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELA 25 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999886544
No 99
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=75.88 E-value=0.88 Score=45.09 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=28.0
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHH-hcCCeEEEEcc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATV-ANQRRIFYTTP 210 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l-~~g~rvlvl~P 210 (1174)
.|.-++|.|++|+|||..+...+...+ ..+..++|+..
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~ 63 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 63 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccc
Confidence 346889999999999988766555443 44567888764
No 100
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=75.53 E-value=0.54 Score=43.37 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=14.6
Q ss_pred cEEEEccCCcchHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~ 192 (1174)
-++++||+|||||+.+-
T Consensus 4 lIii~G~pGsGKTTla~ 20 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAR 20 (152)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998764
No 101
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}
Probab=75.22 E-value=0.46 Score=45.16 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=17.2
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
+.+++.||+|+|||+.+-..
T Consensus 8 K~I~i~G~~GsGKTTla~~L 27 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKL 27 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 67999999999999887653
No 102
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=75.11 E-value=0.82 Score=45.60 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=29.3
Q ss_pred HHHHHHc-----CCcEEEEccCCcchHHHHHHHHHHHHh------cCCeEEEEc
Q 001047 167 SIEAFLR-----GSSVVVSAPTSSGKTLIAEAAAVATVA------NQRRIFYTT 209 (1174)
Q Consensus 167 ai~~ll~-----g~~vlv~apTGsGKTlv~~~~il~~l~------~g~rvlvl~ 209 (1174)
.++.++. |+.++|.||+|+|||..++..+..... .+..++|+.
T Consensus 22 ~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~ 75 (251)
T d1szpa2 22 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 75 (251)
T ss_dssp HHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEE
T ss_pred HHHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEe
Confidence 4455554 468999999999999887766654332 244667664
No 103
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}
Probab=74.54 E-value=0.72 Score=43.14 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=16.3
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
+-+++.||+|||||+++-..
T Consensus 3 klI~i~G~~GsGKTTva~~L 22 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRL 22 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35789999999999987543
No 104
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=74.33 E-value=0.87 Score=45.63 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=16.5
Q ss_pred CcEEEEccCCcchHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~ 193 (1174)
.++|++||+|+|||.++-+
T Consensus 36 ~~~L~~GPpGtGKT~lA~~ 54 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHI 54 (238)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 4799999999999987754
No 105
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=73.51 E-value=0.93 Score=44.04 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=24.8
Q ss_pred HHHHHHc-----CCcEEEEccCCcchHHHHHHHHHHHH
Q 001047 167 SIEAFLR-----GSSVVVSAPTSSGKTLIAEAAAVATV 199 (1174)
Q Consensus 167 ai~~ll~-----g~~vlv~apTGsGKTlv~~~~il~~l 199 (1174)
.+..++. |+-++|.||+|+|||..++..+.+..
T Consensus 11 ~LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 11 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4455554 46889999999999988777666554
No 106
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=72.62 E-value=1.1 Score=45.64 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.5
Q ss_pred cEEEEccCCcchHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~ 193 (1174)
.+|+.||+|+|||..+-.
T Consensus 34 ~ilL~GpPGtGKT~la~~ 51 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSA 51 (273)
T ss_dssp EEEEECCTTSCTHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 589999999999987743
No 107
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.62 E-value=1.1 Score=44.93 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=37.2
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhc------CCeEEEEcccHHHHHHHHHHHHHHh
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVAN------QRRIFYTTPLKALSNQKFREFRETF 226 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~------g~rvlvl~PtraLa~Q~~~~l~~~~ 226 (1174)
.|+-++|.||+|+|||..++..+.+.... ...++++.....+..+....+...+
T Consensus 36 ~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (258)
T d1v5wa_ 36 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 95 (258)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHHHHHHHHhhh
Confidence 34678999999999999988877665432 2367777766665555555555443
No 108
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}
Probab=72.12 E-value=0.92 Score=42.56 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=18.1
Q ss_pred cCCcEEEEccCCcchHHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~ 194 (1174)
..+-++++|+.|||||+++-..
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L 23 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCL 23 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4567889999999999988653
No 109
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=70.76 E-value=1.2 Score=44.64 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.6
Q ss_pred CcEEEEccCCcchHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~ 193 (1174)
.++|+.||+|+|||..+-.
T Consensus 36 ~~~Ll~GPpG~GKTtla~~ 54 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHV 54 (239)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5899999999999987754
No 110
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}
Probab=70.63 E-value=1.1 Score=42.04 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=17.7
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
+++++.|+.|||||+++-..+
T Consensus 1 k~I~liG~~GsGKsTi~k~La 21 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLARALA 21 (161)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 578999999999999886543
No 111
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=69.76 E-value=0.94 Score=42.59 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=18.4
Q ss_pred HcCCcEEEEccCCcchHHHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~~ 194 (1174)
.+|..++++|+.|||||+++-..
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~L 26 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARAL 26 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 35667889999999999987543
No 112
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=69.71 E-value=2.1 Score=40.79 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=15.8
Q ss_pred CcEE-EEccCCcchHHHHHHHH
Q 001047 175 SSVV-VSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vl-v~apTGsGKTlv~~~~i 195 (1174)
+-+| |+||+|||||+++-...
T Consensus 22 ~~iIgI~G~~GSGKSTla~~L~ 43 (198)
T d1rz3a_ 22 RLVLGIDGLSRSGKTTLANQLS 43 (198)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3344 89999999998876543
No 113
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=69.63 E-value=1.7 Score=41.11 Aligned_cols=34 Identities=9% Similarity=-0.059 Sum_probs=23.1
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
+++.|+.|||||+++-...-..-.++..+.++.+
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~ 37 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 5779999999999886654333334556655553
No 114
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=68.98 E-value=2.6 Score=42.44 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=18.5
Q ss_pred HHcCCcEEEEccCCcchHHHHHH
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~ 193 (1174)
...+..++|.|++|+|||.++-.
T Consensus 20 a~~~~pvlI~Ge~GtGK~~~A~~ 42 (247)
T d1ny5a2 20 SCAECPVLITGESGVGKEVVARL 42 (247)
T ss_dssp TTCCSCEEEECSTTSSHHHHHHH
T ss_pred hCCCCCEEEECCCCcCHHHHHHH
Confidence 34567899999999999987654
No 115
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=68.79 E-value=7.9 Score=36.69 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=60.9
Q ss_pred HHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhccc
Q 001047 194 AAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSV 262 (1174)
Q Consensus 194 ~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~ 262 (1174)
-+.+.+.++.++||.++++.-+..++..|.+. +..+..++|+.+. +...+|+|+|. .+.
T Consensus 23 ~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~--g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTd-----v~~--- 92 (181)
T d1t5la2 23 EIRERVERNERTLVTTLTKKMAEDLTDYLKEA--GIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLR--- 92 (181)
T ss_dssp HHHHHHHTTCEEEEECSSHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESC-----CCS---
T ss_pred HHHHHHhcCCeEEEEeehhhhhHHHHHHHHhC--CcceeEecCCccHHHHHHHHHHHHCCCCCEEEehh-----HHH---
Confidence 35556667889999999999999999888873 4679999998863 35789999994 232
Q ss_pred ccccCCCCCCceeEEEEcccccc
Q 001047 263 GMVSSESGLFDVDVIVLDEVHYL 285 (1174)
Q Consensus 263 ~~~~~~~~l~~v~lVIiDEaH~l 285 (1174)
....+.++++||.-.+...
T Consensus 93 ----rGiDip~v~~VI~~d~p~~ 111 (181)
T d1t5la2 93 ----EGLDIPEVSLVAILDADKE 111 (181)
T ss_dssp ----SSCCCTTEEEEEETTTTSC
T ss_pred ----ccCCCCCCCEEEEecCCcc
Confidence 3556789999998887753
No 116
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=68.66 E-value=2.2 Score=43.67 Aligned_cols=51 Identities=24% Similarity=0.241 Sum_probs=39.9
Q ss_pred HHHHHHc-C-----CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHH
Q 001047 167 SIEAFLR-G-----SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQ 217 (1174)
Q Consensus 167 ai~~ll~-g-----~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q 217 (1174)
+++.++. | +-+.+.+|.|||||..++..+......|..++|+----++..+
T Consensus 44 ~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~ 100 (268)
T d1xp8a1 44 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV 100 (268)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH
T ss_pred HHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHH
Confidence 6777774 4 5678999999999999988888888888899998655444443
No 117
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=67.36 E-value=0.87 Score=45.44 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=23.6
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVAN 201 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~ 201 (1174)
.|.-++|.|++|+|||..++..+.+.+..
T Consensus 33 ~G~l~~i~G~~G~GKT~~~l~~a~~~~~~ 61 (258)
T d2i1qa2 33 SQSVTEFAGVFGSGKTQIMHQSCVNLQNP 61 (258)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCG
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 34678999999999999888887776543
No 118
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}
Probab=67.10 E-value=2.4 Score=43.04 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=23.3
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
.+.+++.||+|+|||+++-..+-+. +..++.+.+
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~---~~~~~~i~~ 78 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISG 78 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECS
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHc---CCCEEEEEh
Confidence 3679999999999999876554332 344444443
No 119
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=66.90 E-value=0.56 Score=46.26 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=55.2
Q ss_pred HHHHHHHhcCCeEEEEcccHHHH--------HHHHHHHHH-HhCCCeEEEEeCCCCCC-----------CCCcEEEEcHH
Q 001047 193 AAAVATVANQRRIFYTTPLKALS--------NQKFREFRE-TFGDNNVGLLTGDSAIN-----------REAQILIMTTE 252 (1174)
Q Consensus 193 ~~il~~l~~g~rvlvl~PtraLa--------~Q~~~~l~~-~~g~~~v~lltGd~~~~-----------~~~~IlV~Tpe 252 (1174)
-.|...+.+|.++.|++|..+=+ ...+..+.+ .+++.++++++|..+.. ...+|+|+|+
T Consensus 20 ~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaTt- 98 (206)
T d1gm5a4 20 EFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT- 98 (206)
T ss_dssp HHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS-
T ss_pred HHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEEEEEEeh-
Confidence 34566777899999999986322 233344433 45667899999987643 4789999996
Q ss_pred HHHHHHhcccccccCCCCCCceeEEEEccccccc
Q 001047 253 ILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLS 286 (1174)
Q Consensus 253 ~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~ 286 (1174)
.+. ....+.++.++|+..++..+
T Consensus 99 ----ViE-------~GIDip~a~~iii~~a~~fg 121 (206)
T d1gm5a4 99 ----VIE-------VGIDVPRANVMVIENPERFG 121 (206)
T ss_dssp ----CCC-------SCSCCTTCCEEEBCSCSSSC
T ss_pred ----hhh-------ccccccCCcEEEEEccCCcc
Confidence 333 34567899999999998854
No 120
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=66.78 E-value=2.5 Score=43.14 Aligned_cols=52 Identities=25% Similarity=0.286 Sum_probs=41.4
Q ss_pred HHHHHHc------CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH
Q 001047 167 SIEAFLR------GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQK 218 (1174)
Q Consensus 167 ai~~ll~------g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~ 218 (1174)
+++.++. |+-+.+.+|.|+|||..++..+......+..++|+---..+..+.
T Consensus 47 ~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~ 104 (269)
T d1mo6a1 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDY 104 (269)
T ss_dssp HHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHH
T ss_pred HHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHH
Confidence 6666664 467889999999999999888888888899999987666565443
No 121
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}
Probab=66.39 E-value=1.4 Score=42.34 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=17.0
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++.||+|||||+++....
T Consensus 5 ~I~i~GppGsGKsT~a~~La 24 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIK 24 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999887543
No 122
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}
Probab=66.23 E-value=1.1 Score=41.99 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=16.5
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
+-+++.||.|||||+++-..
T Consensus 7 ~iivl~G~~GsGKsT~a~~L 26 (171)
T d1knqa_ 7 HIYVLMGVSGSGKSAVASEV 26 (171)
T ss_dssp EEEEEECSTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45778999999999988653
No 123
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=66.08 E-value=1.6 Score=41.92 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=18.3
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
|-.+++.||+|||||+++-..+
T Consensus 3 ~~riil~G~pGSGKsT~a~~La 24 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPKLA 24 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 4568889999999999987654
No 124
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}
Probab=65.83 E-value=1.8 Score=40.69 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=18.4
Q ss_pred CcEEEEccCCcchHHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il 196 (1174)
+.+++.|+.|||||+++-..+-
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999876553
No 125
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=65.74 E-value=1.5 Score=44.47 Aligned_cols=19 Identities=42% Similarity=0.606 Sum_probs=16.2
Q ss_pred CcEEEEccCCcchHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~ 193 (1174)
+.+|+.||+|+|||..+-.
T Consensus 41 ~~vLL~GppGtGKT~la~a 59 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAK 59 (246)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHH
Confidence 4699999999999988754
No 126
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=65.60 E-value=2.5 Score=41.82 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.1
Q ss_pred CcEEEEccCCcchHHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~i 195 (1174)
.++++.||+|+|||..+-..+
T Consensus 34 ~~lll~Gp~G~GKTtl~~~i~ 54 (237)
T d1sxjd2 34 PHMLFYGPPGTGKTSTILALT 54 (237)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCChHHHHHHHH
Confidence 368999999999998765544
No 127
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.55 E-value=1.9 Score=41.16 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=17.1
Q ss_pred CCcEEEEccCCcchHHHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~i 195 (1174)
|..++++|++|||||+++-...
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La 40 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALE 40 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999886543
No 128
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=65.35 E-value=1.5 Score=41.59 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=16.8
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
+++|.||.|||||+++...+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La 21 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIV 21 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999987543
No 129
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=65.23 E-value=2 Score=41.42 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=20.2
Q ss_pred HHcCCcEEEEccCCcchHHHHHHHH
Q 001047 171 FLRGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 171 ll~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
+.+++-+++.||+|||||+++-..+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La 29 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIV 29 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHH
Confidence 4566788999999999999886543
No 130
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=64.96 E-value=12 Score=39.84 Aligned_cols=53 Identities=28% Similarity=0.288 Sum_probs=30.2
Q ss_pred HHHHHHHHHcC--CcEEEEccCCcchHHHHHHHHHHHHh-------cCCeEEEEcccHHHHH
Q 001047 164 QRSSIEAFLRG--SSVVVSAPTSSGKTLIAEAAAVATVA-------NQRRIFYTTPLKALSN 216 (1174)
Q Consensus 164 Q~~ai~~ll~g--~~vlv~apTGsGKTlv~~~~il~~l~-------~g~rvlvl~PtraLa~ 216 (1174)
=.+.+..+.+. .|+++.|+.|.|||.+..-.+..... .+.+++.+-+.+-++-
T Consensus 31 i~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag 92 (387)
T d1qvra2 31 IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG 92 (387)
T ss_dssp HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------
T ss_pred HHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcc
Confidence 34455555532 58999999999999887644433332 2346666666655543
No 131
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}
Probab=64.89 E-value=5.2 Score=40.10 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=26.0
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLK 212 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Ptr 212 (1174)
+.+|+.||.|+|||+.+-..+-+. +..++++.+..
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~ 77 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSD 77 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHc---CCCEEEEEhHH
Confidence 579999999999999886555332 56677776654
No 132
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}
Probab=63.14 E-value=1.7 Score=41.21 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=16.8
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++.||.|||||+++-...
T Consensus 2 ~I~i~G~pGSGKsT~~~~La 21 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIM 21 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999986544
No 133
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=63.02 E-value=1.9 Score=41.06 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=16.7
Q ss_pred CCcEEEEccCCcchHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~ 193 (1174)
|+-++++||.|||||.+.-.
T Consensus 2 G~iivl~GpsG~GK~tl~~~ 21 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRC 21 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56789999999999987543
No 134
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=62.86 E-value=2.4 Score=43.05 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=22.8
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
+.+|+.||.|+|||+.+-..+-. -+..++++.+
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~---~~~~~~~i~~ 71 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANE---TGAFFFLING 71 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH---TTCEEEEECH
T ss_pred ceeEEecCCCCCchHHHHHHHHH---hCCeEEEEEc
Confidence 67999999999999876533332 2455665554
No 135
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}
Probab=62.83 E-value=1.8 Score=41.25 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=17.3
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il 196 (1174)
.+++.||+|||||+++...+-
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999998866553
No 136
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}
Probab=62.58 E-value=3.5 Score=38.26 Aligned_cols=33 Identities=27% Similarity=0.160 Sum_probs=23.6
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
+-|+|+.|||||+.....+-..-.+|.++.++-
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik 36 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 36 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 458999999999887655544445676776664
No 137
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=62.32 E-value=1.8 Score=41.07 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=17.2
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
++++.||.|||||+++-..+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La 21 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLA 21 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999987654
No 138
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=61.42 E-value=1.9 Score=41.48 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=16.7
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++.||+|||||+++-..+
T Consensus 10 iI~i~GppGSGKsT~a~~La 29 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKLV 29 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57889999999999887653
No 139
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=61.35 E-value=2.3 Score=40.70 Aligned_cols=19 Identities=26% Similarity=0.630 Sum_probs=15.8
Q ss_pred CcEEEEccCCcchHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~ 193 (1174)
+-++|+||+|+|||.+.-.
T Consensus 2 rpIvl~GpsG~GK~tl~~~ 20 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLLKK 20 (186)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4689999999999986544
No 140
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}
Probab=61.22 E-value=1.9 Score=41.37 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=17.2
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il 196 (1174)
.++|.||.|||||+++...+-
T Consensus 8 iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 8 VVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578899999999998766543
No 141
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}
Probab=60.14 E-value=2.3 Score=41.53 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=17.6
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
+|+-++++||+|+|||.+.-.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~ 21 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQA 21 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 477889999999999987654
No 142
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=58.93 E-value=1.9 Score=40.94 Aligned_cols=37 Identities=11% Similarity=0.061 Sum_probs=22.0
Q ss_pred EEEEccccccccCCcHHHHHHHHHHCCCCccEEEEcccc
Q 001047 276 VIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATV 314 (1174)
Q Consensus 276 lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl 314 (1174)
.||+|..+... .....|..+.....-.+.++.|.+++
T Consensus 67 ~vIiD~t~~~~--~~R~~~~~~a~~~~~~~~~v~l~~~~ 103 (172)
T d1yj5a2 67 RVVIDNTNPDV--PSRARYIQCAKDAGVPCRCFNFCATI 103 (172)
T ss_dssp CEEEESCCCSH--HHHHHHHHHHHHHTCCEEEEEECCCH
T ss_pred CceeeCcCCCH--HHHHHHHHHHHhcCCCEEEEEeCCCH
Confidence 48889777643 23344555555555556677776543
No 143
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.59 E-value=2.7 Score=40.21 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=16.6
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
-++|.||+|||||+++-..+
T Consensus 3 iI~i~GppGSGKsT~a~~La 22 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIV 22 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999999986544
No 144
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=58.35 E-value=4.2 Score=39.02 Aligned_cols=32 Identities=16% Similarity=-0.013 Sum_probs=21.5
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
++++|.+|||||+.+-...-..-..+.++.++
T Consensus 5 i~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~ 36 (213)
T d1bifa1 5 IVMVGLPARGKTYISKKLTRYLNFIGVPTREF 36 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCCeEE
Confidence 67899999999998865543322345555444
No 145
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=58.34 E-value=2.3 Score=40.84 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=17.1
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.+++.||.|||||+++...+
T Consensus 8 rIiliG~PGSGKtT~a~~La 27 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRIT 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68899999999999887644
No 146
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=57.21 E-value=3.1 Score=39.87 Aligned_cols=18 Identities=33% Similarity=0.643 Sum_probs=15.3
Q ss_pred cEEEEccCCcchHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~ 193 (1174)
-++|+||+|+|||.++-.
T Consensus 2 pIvl~GPsGsGK~tl~~~ 19 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKK 19 (190)
T ss_dssp CEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999987654
No 147
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}
Probab=56.93 E-value=3.3 Score=41.91 Aligned_cols=57 Identities=12% Similarity=0.238 Sum_probs=35.0
Q ss_pred HHHHHcCCcEEEEccCCcchHHHHHHHHHHHHh----------cCCeEEEEcccHHHHHHHHHHHHHH
Q 001047 168 IEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVA----------NQRRIFYTTPLKALSNQKFREFRET 225 (1174)
Q Consensus 168 i~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~----------~g~rvlvl~PtraLa~Q~~~~l~~~ 225 (1174)
++-++.|.-++|.|++|+|||..++..++.... .+.+++|+.--- -..++..++...
T Consensus 23 i~G~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~-~~~~~~~Rl~~~ 89 (274)
T d1nlfa_ 23 LPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED-PPTAIHHRLHAL 89 (274)
T ss_dssp ETTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS-CHHHHHHHHHHH
T ss_pred hCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccc-hHHHHHHHHHHH
Confidence 344556788899999999999887665554322 233677775322 233444444443
No 148
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}
Probab=56.39 E-value=4.3 Score=43.33 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=26.3
Q ss_pred HHHHHHHcC----CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 166 SSIEAFLRG----SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 166 ~ai~~ll~g----~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
.++..++.| +.+++.||+|+|||+.+...+-.. +..++.+
T Consensus 142 ~~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~---~~~~i~i 185 (362)
T d1svma_ 142 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV 185 (362)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC
T ss_pred HHHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEE
Confidence 344445544 578999999999998876544333 4555554
No 149
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=55.98 E-value=3.3 Score=38.49 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=16.8
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
++++.|+.|+|||+++-+..
T Consensus 3 ~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 57888999999999987654
No 150
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=55.96 E-value=2.7 Score=39.77 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=17.3
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAV 196 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il 196 (1174)
.+++.||.|||||+++-..+-
T Consensus 4 rIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999866543
No 151
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=55.25 E-value=3.6 Score=41.83 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=24.2
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 174 GSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
.+.+|+.||+|+|||+.+-..+-.. +..++++.+
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~---~~~~~~~~~ 74 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKG 74 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHT---TCEEEEECH
T ss_pred CCeEEEECCCCCcchhHHHHHHHHh---CCcEEEEEH
Confidence 3679999999999998776543332 556666653
No 152
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}
Probab=54.80 E-value=2.1 Score=45.14 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=17.5
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.+.++|+.||+|+|||+.+-.
T Consensus 27 ~~h~vLl~G~pG~GKT~lar~ 47 (333)
T d1g8pa_ 27 GIGGVLVFGDRGTGKSTAVRA 47 (333)
T ss_dssp GGCCEEEECCGGGCTTHHHHH
T ss_pred CCCeEEEECCCCccHHHHHHH
Confidence 447899999999999987643
No 153
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.83 E-value=6.6 Score=38.15 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=26.4
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE-cccH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT-TPLK 212 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl-~Ptr 212 (1174)
+|.-+++.|+-|||||++.-...-..-..|..++++ -|..
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p~~ 42 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPER 42 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 455677789999999998776443333456666655 3543
No 154
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.90 E-value=3 Score=40.66 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=13.6
Q ss_pred EEEEccCCcchHHHHHH
Q 001047 177 VVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~ 193 (1174)
+-|+|++|||||+++-.
T Consensus 5 IgI~G~~gSGKSTla~~ 21 (213)
T d1uj2a_ 5 IGVSGGTASGKSSVCAK 21 (213)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34789999999988743
No 155
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=50.26 E-value=6.5 Score=39.97 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=29.5
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEc
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTT 209 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~ 209 (1174)
+-+++++.=|.|||+++...+......|++|+++-
T Consensus 9 ~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD 43 (296)
T d1ihua1 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (296)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEe
Confidence 56788999999999998887777777888988875
No 156
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.95 E-value=4.3 Score=38.49 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=15.4
Q ss_pred CcEEEEccCCcchHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~ 192 (1174)
+-++++||+|+|||.+.-
T Consensus 4 k~ivl~Gpsg~GK~tl~~ 21 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKN 21 (178)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 568999999999998754
No 157
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=49.58 E-value=2.4 Score=42.87 Aligned_cols=19 Identities=21% Similarity=0.122 Sum_probs=14.8
Q ss_pred EEEEccCCcchHHHHHHHH
Q 001047 177 VVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~i 195 (1174)
++++||+|+|||.+.-..+
T Consensus 49 l~l~GppGtGKT~l~~~l~ 67 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTV 67 (287)
T ss_dssp EECTTCCSSSHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHH
Confidence 4567999999998876544
No 158
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=49.32 E-value=17 Score=32.59 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=40.1
Q ss_pred hcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC----CCCcEEEEcH
Q 001047 200 ANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAIN----REAQILIMTT 251 (1174)
Q Consensus 200 ~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~----~~~~IlV~Tp 251 (1174)
.+++++||.++|+.-++++++.|.+. | ..+..++|+.... ...+|+|+|.
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~~-G-~~~~~~H~~~~~~~~~~~~~~vlvaTd 86 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVAL-G-INAVAYYRGLDVSVIPTNGDVVVVATD 86 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHHH-T-CEEEEECTTCCSCCCTTSSCEEEEESS
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHhcc-c-cchhhhhccchhhhhhhhhcceeehhH
Confidence 35678999999999999999999874 4 5677888887644 4678999994
No 159
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}
Probab=48.77 E-value=6.9 Score=37.75 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=23.6
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEE
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFY 207 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlv 207 (1174)
+|+-+++.|+-|||||++.....-..-..|.+.++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~ 35 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMV 35 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence 36778889999999999887654333234544333
No 160
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Probab=48.39 E-value=4.8 Score=38.95 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=17.1
Q ss_pred EEEEccCCcchHHHHHHHHHHH
Q 001047 177 VVVSAPTSSGKTLIAEAAAVAT 198 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~ 198 (1174)
+.|.||.|||||+++-..+-+.
T Consensus 6 I~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 6 ITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5667999999999987655443
No 161
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}
Probab=47.47 E-value=7.2 Score=38.17 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=21.4
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
++|.||.|||||+.... +++.+..++++.++
T Consensus 3 i~v~G~~GsGKTTLl~~-ll~~~~~~~~~~iv 33 (244)
T d1yrba1 3 VVFVGTAGSGKTTLTGE-FGRYLEDNYKVAYV 33 (244)
T ss_dssp EEEECSTTSSHHHHHHH-HHHHHTTTSCEEEE
T ss_pred EEEEcCCCCcHHHHHHH-HHHHHhhCCeEEEE
Confidence 67899999999986544 34555555555554
No 162
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}
Probab=46.01 E-value=4.5 Score=40.43 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=17.6
Q ss_pred HcCCcEEEEccCCcchHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~ 192 (1174)
..|+.+.|++|+|||||+..-
T Consensus 27 ~~Ge~vaIvG~sGsGKSTLl~ 47 (241)
T d2pmka1 27 KQGEVIGIVGRSGSGKSTLTK 47 (241)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 367889999999999997543
No 163
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=45.64 E-value=5.6 Score=41.48 Aligned_cols=20 Identities=40% Similarity=0.498 Sum_probs=16.1
Q ss_pred cEEEEccCCcchHHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~i 195 (1174)
.++++||||+|||..+-..+
T Consensus 55 ~~lf~Gp~G~GKt~lak~la 74 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLA 74 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHH
Confidence 56888999999998876443
No 164
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=45.01 E-value=8.7 Score=38.68 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=25.3
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
+-+++++.=|.|||+++...+......|.+|+++
T Consensus 21 ~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllv 54 (279)
T d1ihua2 21 GLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLT 54 (279)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 3456789999999998877666555667777765
No 165
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=45.00 E-value=4.8 Score=41.98 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=15.7
Q ss_pred cEEEEccCCcchHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~ 193 (1174)
+++++||||+|||..+-.
T Consensus 54 ~~lf~Gp~GvGKT~lak~ 71 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQ 71 (315)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCcchhHHHHHH
Confidence 688999999999987765
No 166
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Probab=44.39 E-value=8.4 Score=39.34 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=27.0
Q ss_pred HHHHHHHHH---cCCcEEEEccCCcchHHHHHHHHHHH
Q 001047 164 QRSSIEAFL---RGSSVVVSAPTSSGKTLIAEAAAVAT 198 (1174)
Q Consensus 164 Q~~ai~~ll---~g~~vlv~apTGsGKTlv~~~~il~~ 198 (1174)
=.++|+.+. .|+.++|.|+.|+|||.+....+...
T Consensus 30 ~~r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 30 TARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHHHHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cceeeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 346777765 78999999999999998866555443
No 167
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=44.31 E-value=6.1 Score=38.32 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=17.0
Q ss_pred EEEEccCCcchHHHHHHHHHHH
Q 001047 177 VVVSAPTSSGKTLIAEAAAVAT 198 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~ 198 (1174)
+.|.||.|||||+++-..+-+.
T Consensus 6 IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4567999999999987665443
No 168
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=43.77 E-value=4.9 Score=40.55 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=17.3
Q ss_pred HcCCcEEEEccCCcchHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIA 191 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~ 191 (1174)
..|+.+.|++|+|||||+..
T Consensus 42 ~~Ge~vaivG~sGsGKSTLl 61 (255)
T d2hyda1 42 EKGETVAFVGMSGGGKSTLI 61 (255)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 36789999999999999764
No 169
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.71 E-value=5.7 Score=39.93 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=18.2
Q ss_pred HcCCcEEEEccCCcchHHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~~ 193 (1174)
..|+.+.|++|+|||||+..-+
T Consensus 38 ~~Ge~vaivG~sGsGKSTLl~l 59 (251)
T d1jj7a_ 38 RPGEVTALVGPNGSGKSTVAAL 59 (251)
T ss_dssp CTTCEEEEECSTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHH
Confidence 3678899999999999986543
No 170
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=43.24 E-value=43 Score=31.75 Aligned_cols=77 Identities=12% Similarity=0.000 Sum_probs=51.9
Q ss_pred hCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHH
Q 001047 438 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFI 517 (1174)
Q Consensus 438 ~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v 517 (1174)
...+..+||.++++.-|......+.... ......+...+|+.....+...
T Consensus 69 ~~~~~~~lil~pt~~l~~q~~~~~~~~~------------------------------~~~~~~v~~~~g~~~~~~~~~~ 118 (208)
T d1hv8a1 69 ENNGIEAIILTPTRELAIQVADEIESLK------------------------------GNKNLKIAKIYGGKAIYPQIKA 118 (208)
T ss_dssp SSSSCCEEEECSCHHHHHHHHHHHHHHH------------------------------CSSCCCEEEECTTSCHHHHHHH
T ss_pred cccCcceEEEeeccccchhhhhhhhhhc------------------------------ccCCeEEEEeeCCCChHHHHHh
Confidence 3455689999999999988877665321 1222367888888877665543
Q ss_pred HHHHhcCCceEEEechh-----h-hhcCCcCCceEEEe
Q 001047 518 EELFQRGLVKVVFATET-----L-AAGINMPARTAVLS 549 (1174)
Q Consensus 518 ~~~F~~G~ikVLVAT~t-----l-a~GIDiP~v~vVI~ 549 (1174)
. + ..+|||+|+- + ...+++..+.++|.
T Consensus 119 l---~--~~~IlV~TP~~l~~~l~~~~~~~~~l~~lVi 151 (208)
T d1hv8a1 119 L---K--NANIVVGTPGRILDHINRGTLNLKNVKYFIL 151 (208)
T ss_dssp H---H--TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred c---C--CCCEEEEChHHHHHHHHcCCCCcccCcEEEE
Confidence 3 2 3589999953 3 34668888877654
No 171
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}
Probab=43.03 E-value=5.3 Score=38.63 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=17.6
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
+|+-+.+.||.|||||+.+-.
T Consensus 26 ~Gei~~l~G~NGsGKSTLl~~ 46 (200)
T d1sgwa_ 26 KGNVVNFHGPNGIGKTTLLKT 46 (200)
T ss_dssp TTCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHH
Confidence 678889999999999986543
No 172
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=42.72 E-value=28 Score=31.76 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=50.5
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCC
Q 001047 201 NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSES 269 (1174)
Q Consensus 201 ~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~ 269 (1174)
...++||.|.++.-+.+++..+... +..+..++|+.+. +....|+|+|. .+. ...
T Consensus 26 ~~~k~iIF~~s~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Td-----v~~-------rGi 91 (162)
T d1fuka_ 26 SVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA-------RGI 91 (162)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGT-------TTC
T ss_pred CCCcEEEEEEEEchHHHHHHHHhhc--CceEEEeccCCchhhHHHHHHHHhhcccceeeccc-----ccc-------ccc
Confidence 4568999999999999999998773 3568889998763 35788999996 233 244
Q ss_pred CCCceeEEEEcc
Q 001047 270 GLFDVDVIVLDE 281 (1174)
Q Consensus 270 ~l~~v~lVIiDE 281 (1174)
.+.++++||.=.
T Consensus 92 Di~~v~~VI~~d 103 (162)
T d1fuka_ 92 DVQQVSLVINYD 103 (162)
T ss_dssp CCCSCSEEEESS
T ss_pred cCCCceEEEEec
Confidence 677888888633
No 173
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=41.64 E-value=11 Score=35.80 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=23.0
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeEEEE-ccc
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYT-TPL 211 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl-~Pt 211 (1174)
++|.|.-|||||++.....-..-..|..++++ -|.
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P~ 38 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPR 38 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 57889999999998876443222356556554 353
No 174
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.38 E-value=8.1 Score=40.29 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=19.1
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.++.+++|.+ ++..|+||||||...
T Consensus 67 lv~~~l~G~n~~i~aYGqtgSGKTyT~ 93 (323)
T d1bg2a_ 67 IVKDVLEGYNGTIFAYGQTSSGKTHTM 93 (323)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHcCCCcceeeecccCCCCceec
Confidence 4556678864 677899999999764
No 175
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=41.29 E-value=5.8 Score=39.92 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=17.8
Q ss_pred HcCCcEEEEccCCcchHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~ 192 (1174)
..|+.+.|++|+|||||+.+-
T Consensus 39 ~~Ge~iaivG~sGsGKSTLl~ 59 (253)
T d3b60a1 39 PAGKTVALVGRSGSGKSTIAS 59 (253)
T ss_dssp CTTCEEEEEECTTSSHHHHHH
T ss_pred cCCCEEEEECCCCChHHHHHH
Confidence 367889999999999997654
No 176
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=40.63 E-value=5.9 Score=39.20 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=17.0
Q ss_pred HcCCcEEEEccCCcchHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIA 191 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~ 191 (1174)
.+|..+.+.+|+|||||+..
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl 48 (230)
T d1l2ta_ 29 KEGEFVSIMGPSGSGKSTML 48 (230)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCcchhh
Confidence 36788999999999999763
No 177
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.57 E-value=7.4 Score=39.77 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCcchHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~ 192 (1174)
.|+-+.|.||+|||||+..-
T Consensus 61 ~Ge~vaivG~nGsGKSTLl~ 80 (281)
T d1r0wa_ 61 KGEMLAITGSTGSGKTSLLM 80 (281)
T ss_dssp TTCEEEEEESTTSSHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHH
Confidence 67788999999999997643
No 178
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=39.53 E-value=5.6 Score=39.73 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCcchHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~ 192 (1174)
.|+-+.|.+|+|||||+.+-
T Consensus 27 ~Ge~vaivG~sGsGKSTLl~ 46 (242)
T d1mv5a_ 27 PNSIIAFAGPSGGGKSTIFS 46 (242)
T ss_dssp TTEEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56788999999999997653
No 179
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=37.99 E-value=20 Score=31.92 Aligned_cols=61 Identities=10% Similarity=0.064 Sum_probs=44.9
Q ss_pred HHHhhHHHHHhhcCCccC----CC-----CccChhhHHHHhhcCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 001047 982 KEFLRISNVIHETRALDI----NT-----QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 1046 (1174)
Q Consensus 982 ~~f~~~~~VL~~lgyl~~----~~-----~~vt~~Gr~a~~i~~~~eLllte~l~~g~~~~L~p~~laA~~s~~ 1046 (1174)
..-.++++.|.+.|||.. .+ ..+|++|+-+.+-. .-...-+.+.+|.+|+++|...++.+|
T Consensus 65 ~~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~G~~~~~~~----~~~~~~~~~~~~~~ls~~e~~~l~~~L 134 (141)
T d1lnwa_ 65 ALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHQHA----EAIMSRVHDELFAPLTPVEQATLVHLL 134 (141)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHHHHHHHHHH----HHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhceeeeccCCCCcchhhccCHHHHHHHHHH----HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 445578889999999953 11 28999999765533 234556677789999999999888764
No 180
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=37.93 E-value=7.9 Score=39.58 Aligned_cols=17 Identities=12% Similarity=0.423 Sum_probs=11.0
Q ss_pred EEEEccCCcchHHHHHH
Q 001047 177 VVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~ 193 (1174)
+-|+|++|||||+++-.
T Consensus 7 IgIaG~SGSGKTTva~~ 23 (288)
T d1a7ja_ 7 ISVTGSSGAGTSTVKHT 23 (288)
T ss_dssp EEEESCC---CCTHHHH
T ss_pred EEEECCCCCcHHHHHHH
Confidence 56899999999987643
No 181
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=37.82 E-value=12 Score=36.05 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=15.9
Q ss_pred CCcEEEEccCCcchHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~ 193 (1174)
|.-+.+.|.+|||||+++-.
T Consensus 24 g~vIwltGlsGsGKTTia~~ 43 (208)
T d1m7ga_ 24 GLTIWLTGLSASGKSTLAVE 43 (208)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34678899999999987643
No 182
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=37.27 E-value=13 Score=37.97 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=12.2
Q ss_pred EEccCCcchHHHHHH
Q 001047 179 VSAPTSSGKTLIAEA 193 (1174)
Q Consensus 179 v~apTGsGKTlv~~~ 193 (1174)
|+|++|||||+.+..
T Consensus 32 i~G~qGSGKSTl~~~ 46 (286)
T d1odfa_ 32 FSGPQGSGKSFTSIQ 46 (286)
T ss_dssp EECCTTSSHHHHHHH
T ss_pred eECCCCCCHHHHHHH
Confidence 689999999976543
No 183
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=36.24 E-value=30 Score=32.90 Aligned_cols=64 Identities=9% Similarity=0.029 Sum_probs=47.9
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCC
Q 001047 201 NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSES 269 (1174)
Q Consensus 201 ~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~ 269 (1174)
.+.++||.++|+.-+...+..+... +..+..++|+.+. +...+|+|+|. .+. ...
T Consensus 29 ~~~~~IIF~~t~~~~~~l~~~l~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd-----~~~-------~Gi 94 (200)
T d1oywa3 29 RGKSGIIYCNSRAKVEDTAARLQSK--GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AFG-------MGI 94 (200)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TSC-------TTT
T ss_pred CCCCEEEEEeeehhhHHhhhhhccC--CceeEEecCCCcHHHHHHHHHHHhcccceEEEecc-----hhh-------hcc
Confidence 5678999999999999999888873 3568889998763 24678999995 222 234
Q ss_pred CCCceeEEE
Q 001047 270 GLFDVDVIV 278 (1174)
Q Consensus 270 ~l~~v~lVI 278 (1174)
.+.++++||
T Consensus 95 D~p~v~~VI 103 (200)
T d1oywa3 95 NKPNVRFVV 103 (200)
T ss_dssp CCTTCCEEE
T ss_pred CCCCCCEEE
Confidence 566788887
No 184
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=35.75 E-value=9.6 Score=37.83 Aligned_cols=43 Identities=14% Similarity=0.174 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHhc----CCceEEEechhhhhcCCcCCceEEEe
Q 001047 507 AGCLPIWKSFIEELFQR----GLVKVVFATETLAAGINMPARTAVLS 549 (1174)
Q Consensus 507 sgl~~~~R~~v~~~F~~----G~ikVLVAT~tla~GIDiP~v~vVI~ 549 (1174)
+||.+..+..+.+.+++ -..-||+.|--+..-..+-+..+|+.
T Consensus 168 ~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~ 214 (240)
T d1g2912 168 SNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMN 214 (240)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred cccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 56777777777666643 24567777776666666766666665
No 185
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
Probab=35.59 E-value=7.8 Score=38.55 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=16.9
Q ss_pred HcCCcEEEEccCCcchHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIA 191 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~ 191 (1174)
.+|+-+.+.+|+|||||+..
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl 48 (240)
T d3dhwc1 29 PAGQIYGVIGASGAGKSTLI 48 (240)
T ss_dssp CSSCEEEEEESTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 36788899999999999753
No 186
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}
Probab=35.53 E-value=11 Score=39.82 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=18.6
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.+..+++|.+ ++..|.||||||...
T Consensus 105 lv~~~l~G~n~tifaYGqTGSGKTyTm 131 (362)
T d1v8ka_ 105 LVQTIFEGGKATCFAYGQTGSGKTHTM 131 (362)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhccCceEEeeccCCCCCceee
Confidence 4556678864 566799999999764
No 187
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=35.19 E-value=42 Score=30.73 Aligned_cols=66 Identities=8% Similarity=0.013 Sum_probs=49.9
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCC
Q 001047 201 NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSES 269 (1174)
Q Consensus 201 ~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~ 269 (1174)
.+.++||.+.++.-+...+..|... | ..+..++|+.+. +...+|+|+|.- +. ...
T Consensus 31 ~~~k~iVF~~~~~~~~~l~~~L~~~-g-~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td~-----~~-------~Gi 96 (171)
T d1s2ma2 31 QINQAIIFCNSTNRVELLAKKITDL-G-YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL-----LT-------RGI 96 (171)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH-T-CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC-----SS-------SSC
T ss_pred CCCceEEEEeeeehhhHhHHhhhcc-c-ccccccccccchhhhhhhhhhcccCccccccchhH-----hh-------hcc
Confidence 5679999999999999999988874 4 557888888763 246789999862 22 345
Q ss_pred CCCceeEEEEc
Q 001047 270 GLFDVDVIVLD 280 (1174)
Q Consensus 270 ~l~~v~lVIiD 280 (1174)
.+.++++||.=
T Consensus 97 d~~~v~~VI~~ 107 (171)
T d1s2ma2 97 DIQAVNVVINF 107 (171)
T ss_dssp CCTTEEEEEES
T ss_pred ccceeEEEEec
Confidence 67789988843
No 188
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=35.17 E-value=10 Score=37.15 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=21.4
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTP 210 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~P 210 (1174)
.+|+|.-|||||+.. .-++.. ..+.++.||+.
T Consensus 6 ~iitGFLGaGKTTll-~~lL~~-~~~~riaVI~N 37 (222)
T d1nija1 6 TLLTGFLGAGKTTLL-RHILNE-QHGYKIAVIEN 37 (222)
T ss_dssp EEEEESSSSSCHHHH-HHHHHS-CCCCCEEEECS
T ss_pred EEEeeCCCCCHHHHH-HHHHhc-CCCCcEEEEEe
Confidence 689999999999843 223332 34667777764
No 189
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=34.97 E-value=14 Score=35.84 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=23.8
Q ss_pred EEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 178 VVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 178 lv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
+.++.-|.|||+++.-.+......|.+|+++
T Consensus 7 v~~~kGGvGKTtia~nLA~~la~~g~~Vlli 37 (237)
T d1g3qa_ 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAV 37 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 3447889999999877666655678888887
No 190
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=34.78 E-value=10 Score=37.42 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCcchHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIA 191 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~ 191 (1174)
.|+-+.+.+|.|||||+..
T Consensus 25 ~Gei~~liGpsGsGKSTLl 43 (232)
T d2awna2 25 EGEFVVFVGPSGCGKSTLL 43 (232)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCChHHHHH
Confidence 6778899999999999764
No 191
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=34.74 E-value=8.9 Score=36.17 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=17.5
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.|+-++++++.|+|||..+..
T Consensus 14 ~g~gvli~G~sG~GKS~lal~ 34 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALD 34 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHH
Confidence 467799999999999977654
No 192
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Probab=34.72 E-value=11 Score=39.73 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=18.7
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.+..+++|.+ ++..|+||||||...
T Consensus 71 lv~~~l~G~n~ti~aYG~tgSGKT~Tm 97 (354)
T d1goja_ 71 TVDDILNGYNGTVFAYGQTGAGKSYTM 97 (354)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhhccCceeEEecccCCCCcceee
Confidence 4455678865 667899999999654
No 193
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}
Probab=34.54 E-value=16 Score=37.75 Aligned_cols=19 Identities=37% Similarity=0.464 Sum_probs=14.9
Q ss_pred cEEEEccCCcchHHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~ 194 (1174)
.+|+.+|+|+|||+++-..
T Consensus 125 ~~l~~G~pG~GKT~la~al 143 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHAL 143 (321)
T ss_dssp EEEEECSSSSCHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHH
Confidence 4566899999999887643
No 194
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=34.10 E-value=7.9 Score=36.68 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=14.5
Q ss_pred cEEEEccCCcchHHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~ 193 (1174)
-++|.|+.|||||+++-.
T Consensus 11 ~I~ieG~~GsGKTTl~~~ 28 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNH 28 (197)
T ss_dssp EEEEECSTTSCHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999986543
No 195
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=33.65 E-value=9.9 Score=37.45 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=17.3
Q ss_pred HcCCcEEEEccCCcchHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~ 192 (1174)
..|.-+.+.+|.|||||+..-
T Consensus 24 ~~Ge~~~liGpsGaGKSTll~ 44 (229)
T d3d31a2 24 ESGEYFVILGPTGAGKTLFLE 44 (229)
T ss_dssp CTTCEEEEECCCTHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHH
Confidence 367788999999999997653
No 196
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=33.27 E-value=43 Score=29.48 Aligned_cols=63 Identities=5% Similarity=-0.070 Sum_probs=46.0
Q ss_pred cHHHHhhHHHHHhhcCCcc----CCC-----CccChhhHHHHhhcCCchHHHHHHHHhcccCCCCHHhHHHHHhhh
Q 001047 980 GWKEFLRISNVIHETRALD----INT-----QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASL 1046 (1174)
Q Consensus 980 ~~~~f~~~~~VL~~lgyl~----~~~-----~~vt~~Gr~a~~i~~~~eLllte~l~~g~~~~L~p~~laA~~s~~ 1046 (1174)
--..-.++++-|.+.|||. .++ ..+|++|+..++-.- -..+-....+|.+|+++|+..+...|
T Consensus 62 ~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 133 (143)
T d1s3ja_ 62 KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVL----AGRKAIMARYLSFLTEEEMLQAAHIT 133 (143)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHH----HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhheeeeecCCCCceEEEECHHHHHHHHHHH----HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3444558889999999995 222 389999998887542 22334566689999999999887765
No 197
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=32.76 E-value=12 Score=39.72 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=19.4
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.+..+++|.+ ++..|+||||||...
T Consensus 66 lv~~~l~G~n~~i~aYGqTGSGKTyTm 92 (364)
T d1sdma_ 66 LVQSAVDGYNVCIFAYGQTGSGKTFTI 92 (364)
T ss_dssp HHHHHHTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCceeeeccccCCCCccccc
Confidence 4677788864 567899999999664
No 198
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}
Probab=32.46 E-value=9.5 Score=37.90 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=17.5
Q ss_pred HcCCcEEEEccCCcchHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~ 192 (1174)
.+|+-+.+.+|.|||||+.+-
T Consensus 30 ~~Gei~~liGpnGaGKSTl~~ 50 (240)
T d1ji0a_ 30 PRGQIVTLIGANGAGKTTTLS 50 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHH
Confidence 367788999999999998654
No 199
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=32.28 E-value=12 Score=39.68 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=20.2
Q ss_pred HHHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 166 SSIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 166 ~ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
..++.+++|.+ ++..|+||||||...
T Consensus 115 plv~~vl~G~n~ti~aYGqtGSGKT~Tm 142 (368)
T d2ncda_ 115 PLIQSALDGYNICIFAYGQTGSGKTYTM 142 (368)
T ss_dssp HHHHHHHTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcccceeEEeeccCCCccceEe
Confidence 36677788864 677899999999663
No 200
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.25 E-value=95 Score=28.08 Aligned_cols=86 Identities=16% Similarity=0.090 Sum_probs=58.6
Q ss_pred EEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC-----------CCCcE
Q 001047 178 VVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAIN-----------REAQI 246 (1174)
Q Consensus 178 lv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~-----------~~~~I 246 (1174)
.+.-+....|... +..++.. ..+.++|+.+.++.-+...+..+... | ..+..++|+.+.. ...+|
T Consensus 12 ~v~v~~~~~K~~~-L~~ll~~-~~~~k~iiF~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~r~~~~~~fk~g~~~i 87 (168)
T d2j0sa2 12 FVAVEREEWKFDT-LCDLYDT-LTITQAVIFCNTKRKVDWLTEKMREA-N-FTVSSMHGDMPQKERESIMKEFRSGASRV 87 (168)
T ss_dssp EEEESSTTHHHHH-HHHHHHH-HTSSEEEEECSSHHHHHHHHHHHHHT-T-CCCEEECTTSCHHHHHHHHHHHHHTSSCE
T ss_pred EEEecChHHHHHH-HHHHHHh-CCCCceEEEeeeHHHHHHHHHHhhhc-c-cchhhhhhhhhHHHHHHHHHHHhcCCccE
Confidence 3444444556433 3334443 34678999999999999999888873 3 4578889887633 46789
Q ss_pred EEEcHHHHHHHHhcccccccCCCCCCceeEEEE
Q 001047 247 LIMTTEILRNMLYQSVGMVSSESGLFDVDVIVL 279 (1174)
Q Consensus 247 lV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIi 279 (1174)
+|+|. .+. ....+.++++||.
T Consensus 88 Lv~Td-----~~~-------rGiDi~~v~~VIn 108 (168)
T d2j0sa2 88 LISTD-----VWA-------RGLDVPQVSLIIN 108 (168)
T ss_dssp EEECG-----GGS-------SSCCCTTEEEEEE
T ss_pred Eeccc-----hhc-------ccccccCcceEEE
Confidence 99996 333 3456778998883
No 201
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}
Probab=32.18 E-value=14 Score=38.86 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=18.8
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.++.+++|.+ ++..|.||||||...
T Consensus 78 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 104 (349)
T d2zfia1 78 MLQHAFEGYNVCIFAYGQTGAGKSYTM 104 (349)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhccCceeeeeccCCCCCceee
Confidence 4455678854 677899999999653
No 202
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}
Probab=32.04 E-value=16 Score=36.41 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=26.0
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
-+.|++.=|.|||+++..........|.+|+++
T Consensus 3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllI 35 (269)
T d1cp2a_ 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 355778889999999877766666678888876
No 203
>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}
Probab=31.84 E-value=35 Score=31.24 Aligned_cols=70 Identities=13% Similarity=0.179 Sum_probs=44.2
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMT 250 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~T 250 (1174)
.|++++|.+.=|++|+.+|.+.- .|.++.++.-+.+-+.+..+.+... +. +..+.-+......++++|-|
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~-----~g~~i~I~nRt~~ka~~l~~~~~~~-~~--~~~~~~~~~~~~~~dliIN~ 86 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLS-----LDCAVTITNRTVSRAEELAKLFAHT-GS--IQALSMDELEGHEFDLIINA 86 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSHHHHHHHHHHTGGG-SS--EEECCSGGGTTCCCSEEEEC
T ss_pred CCCEEEEECCcHHHHHHHHHhcc-----cceEEEeccchHHHHHHHHHHHhhc-cc--ccccccccccccccceeecc
Confidence 57899999999999998876422 3557666666666666666555542 22 33333333334567888744
No 204
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}
Probab=31.74 E-value=13 Score=38.84 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=19.1
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~ 191 (1174)
.+..+++|.+ ++..|+||||||...
T Consensus 72 lv~~~l~G~n~~i~aYGqtgSGKTyTm 98 (345)
T d1x88a1 72 ILDEVIMGYNCTIFAYGQTGTGKTFTM 98 (345)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhccCCceEEeeeeccccceEEe
Confidence 4566778864 567899999999654
No 205
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}
Probab=31.57 E-value=11 Score=35.42 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=17.4
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.|+-++++++.|+|||..++.
T Consensus 13 ~g~gvl~~G~sG~GKStlal~ 33 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALE 33 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHH
Confidence 467799999999999987653
No 206
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=31.43 E-value=23 Score=35.69 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=26.0
Q ss_pred HHHHHHH---cCCcEEEEccCCcchHHHHHHHHHHH
Q 001047 166 SSIEAFL---RGSSVVVSAPTSSGKTLIAEAAAVAT 198 (1174)
Q Consensus 166 ~ai~~ll---~g~~vlv~apTGsGKTlv~~~~il~~ 198 (1174)
++|+.+. +|+.+.+.|+.|+|||....-.+.+.
T Consensus 57 raID~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~ 92 (276)
T d2jdid3 57 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 92 (276)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eeeeeeccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence 5777665 78999999999999998876655443
No 207
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}
Probab=30.50 E-value=4.4 Score=38.26 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=13.7
Q ss_pred EEEEccCCcchHHHHHH
Q 001047 177 VVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~ 193 (1174)
.+|.||+|||||.+...
T Consensus 27 tvi~G~NGsGKStil~A 43 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAA 43 (222)
T ss_dssp HHHHSCCSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 46789999999987654
No 208
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}
Probab=30.43 E-value=11 Score=35.36 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=13.2
Q ss_pred EEccCCcchHHHHHH
Q 001047 179 VSAPTSSGKTLIAEA 193 (1174)
Q Consensus 179 v~apTGsGKTlv~~~ 193 (1174)
|+|+.|||||+++-+
T Consensus 8 itG~~gSGKstva~~ 22 (191)
T d1uf9a_ 8 ITGNIGSGKSTVAAL 22 (191)
T ss_dssp EEECTTSCHHHHHHH
T ss_pred EECCCCCCHHHHHHH
Confidence 679999999998765
No 209
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=30.37 E-value=13 Score=36.69 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=17.1
Q ss_pred cCCcEEEEccCCcchHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~ 192 (1174)
+|+-+.+.+|.|||||+..-
T Consensus 31 ~Ge~~~liGpsGaGKSTLl~ 50 (239)
T d1v43a3 31 DGEFLVLLGPSGCGKTTTLR 50 (239)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHH
Confidence 67788999999999998654
No 210
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}
Probab=30.00 E-value=12 Score=34.91 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=17.3
Q ss_pred cCCcEEEEccCCcchHHHHHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~ 193 (1174)
.|+-+++.++.|+|||..++.
T Consensus 14 ~g~gvli~G~sg~GKS~la~~ 34 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALE 34 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHH
Confidence 467799999999999976643
No 211
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=29.97 E-value=22 Score=34.14 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=24.3
Q ss_pred EEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 178 VVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 178 lv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
+.++.=|.|||+++.-.+......|.+|+++
T Consensus 6 v~s~KGGvGKTtia~nlA~~la~~g~~Vlli 36 (232)
T d1hyqa_ 6 VASGKGGTGKTTITANLGVALAQLGHDVTIV 36 (232)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence 5568889999999877666555678888877
No 212
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus [TaxId: 2261]}
Probab=29.88 E-value=10 Score=39.02 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.5
Q ss_pred cEEEEccCCcchHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~ 192 (1174)
-.+++||+|||||.+..
T Consensus 28 lnvi~G~NGsGKS~il~ 44 (329)
T g1xew.1 28 FTAIVGANGSGKSNIGD 44 (329)
T ss_dssp EEEEEECTTSSSHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 45899999999998765
No 213
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}
Probab=29.77 E-value=21 Score=37.03 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=20.6
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeE
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRI 205 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rv 205 (1174)
.+=|.+|+|+|||......+......|.++
T Consensus 56 ~IgitG~pGaGKSTLi~~l~~~~~~~g~~v 85 (327)
T d2p67a1 56 RLGVTGTPGAGKSTFLEAFGMLLIREGLKV 85 (327)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhcCCce
Confidence 355789999999987665555444455544
No 214
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=29.77 E-value=10 Score=37.69 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=17.6
Q ss_pred HcCCcEEEEccCCcchHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~ 192 (1174)
.+|+-+.+.+|.|||||+..-
T Consensus 29 ~~Ge~~~iiG~sGsGKSTll~ 49 (242)
T d1oxxk2 29 ENGERFGILGPSGAGKTTFMR 49 (242)
T ss_dssp CTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHH
Confidence 367889999999999998654
No 215
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=29.16 E-value=1.1e+02 Score=29.66 Aligned_cols=111 Identities=9% Similarity=0.022 Sum_probs=68.3
Q ss_pred CcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEIL 254 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe~L 254 (1174)
..-++-+-||||=... .++..+..++++.-+=.....+....+.+.+..+..++.+..+|....
T Consensus 86 G~rVLEiG~GsG~lt~---~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~------------- 149 (250)
T d1yb2a1 86 GMDILEVGVGSGNMSS---YILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF------------- 149 (250)
T ss_dssp TCEEEEECCTTSHHHH---HHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-------------
T ss_pred cCEEEEeeeeCcHHHH---HHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-------------
Confidence 4678899999994322 234445556677666666666666666666654545677777765310
Q ss_pred HHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEccccCChHHHH
Q 001047 255 RNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELA 321 (1174)
Q Consensus 255 ~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LSATl~n~~~~~ 321 (1174)
+ .-..++.|++| +. .....+..+...+.++-.+++.++|+.....+.
T Consensus 150 ---~-----------~~~~fD~V~ld----~p--~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~ 196 (250)
T d1yb2a1 150 ---I-----------SDQMYDAVIAD----IP--DPWNHVQKIASMMKPGSVATFYLPNFDQSEKTV 196 (250)
T ss_dssp ---C-----------CSCCEEEEEEC----CS--CGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHH
T ss_pred ---c-----------ccceeeeeeec----CC--chHHHHHHHHHhcCCCceEEEEeCCcChHHHHH
Confidence 0 01257888876 32 233456677777877888888888874333333
No 216
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}
Probab=29.09 E-value=19 Score=37.06 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=13.8
Q ss_pred EEEEccCCcchHHHHHH
Q 001047 177 VVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~ 193 (1174)
+-|+|+.|||||+.+-.
T Consensus 83 IGIaG~sgSGKSTla~~ 99 (308)
T d1sq5a_ 83 ISIAGSVAVGKSTTARV 99 (308)
T ss_dssp EEEEECTTSSHHHHHHH
T ss_pred EEEeCCCCCCCcHHHHH
Confidence 45799999999987654
No 217
>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=28.99 E-value=76 Score=27.78 Aligned_cols=60 Identities=18% Similarity=0.033 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEec
Q 001047 427 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 506 (1174)
Q Consensus 427 ~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~H 506 (1174)
+.....+..|.+.+....|+=-.+...+..+++.| |+..+|
T Consensus 24 ~~a~~~I~~L~~~Gi~v~ilTGD~~~~a~~ia~~l---------------------------------------gI~~v~ 64 (135)
T d2b8ea1 24 ESAKPAVQELKRMGIKVGMITGDNWRSAEAISREL---------------------------------------NLDLVI 64 (135)
T ss_dssp TTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHH---------------------------------------TCSEEE
T ss_pred ccHHHHHHHHHHcCCEEEEEcCcchhhhhHHHhhh---------------------------------------hhhhhc
Confidence 45566777777776544444444566676666665 566789
Q ss_pred CCCCHHHHHHHHHHHhcCC
Q 001047 507 AGCLPIWKSFIEELFQRGL 525 (1174)
Q Consensus 507 sgl~~~~R~~v~~~F~~G~ 525 (1174)
++++|+++..+.+.++.|.
T Consensus 65 ~~~~p~~k~~~v~~~q~~~ 83 (135)
T d2b8ea1 65 AEVLPHQKSEEVKKLQAKE 83 (135)
T ss_dssp CSCCHHHHHHHHHHHTTTS
T ss_pred cccchhHHHHHHHHHHcCC
Confidence 9999999999999998865
No 218
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}
Probab=28.99 E-value=20 Score=36.18 Aligned_cols=33 Identities=9% Similarity=0.171 Sum_probs=24.9
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEE
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYT 208 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl 208 (1174)
-+.|++.=|.|||+++.-........|++|+++
T Consensus 4 ~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlI 36 (289)
T d2afhe1 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 356678899999998876655555678888876
No 219
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}
Probab=28.91 E-value=13 Score=35.69 Aligned_cols=16 Identities=38% Similarity=0.376 Sum_probs=13.2
Q ss_pred EEEccCCcchHHHHHH
Q 001047 178 VVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 178 lv~apTGsGKTlv~~~ 193 (1174)
-|+|+.|||||+++-+
T Consensus 6 gITG~igSGKStv~~~ 21 (205)
T d1jjva_ 6 GLTGGIGSGKTTIANL 21 (205)
T ss_dssp EEECSTTSCHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 3799999999998653
No 220
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}
Probab=28.87 E-value=13 Score=35.81 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=14.0
Q ss_pred EEEEccCCcchHHHHHH
Q 001047 177 VVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~ 193 (1174)
+-|+|+.|||||+++-+
T Consensus 6 IgitG~igSGKStv~~~ 22 (208)
T d1vhta_ 6 VALTGGIGSGKSTVANA 22 (208)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCcCCHHHHHHH
Confidence 34799999999998764
No 221
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=28.21 E-value=69 Score=27.99 Aligned_cols=68 Identities=12% Similarity=0.212 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhCCCCHHHHHHhcCCChhHHHHHHHHHHH
Q 001047 1069 VINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 1138 (1174)
Q Consensus 1069 l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~v~~Wa~G~~~~~i~~~t~l~eGd~vR~~rrl~d 1138 (1174)
+......+..+.+++..-....+..++. ..+.+...++. ..|.+..+|.+...+..|.+-|.+++|++
T Consensus 9 ~~~l~~~~~~~~~~~~~~~~~~~~~lt~-~q~~vL~~l~~-~~~~t~~~la~~l~~~~~~vsr~l~~L~~ 76 (141)
T d1lnwa_ 9 MPALMAVFQHVRTRIQSELDCQRLDLTP-PDVHVLKLIDE-QRGLNLQDLGRQMCRDKALITRKIRELEG 76 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCH-HHHHHHHHHHS-STTCBHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHH-CCCCCHHHHHHHHCccHhHHHHHHHHHHH
Confidence 4444455566666666665544444443 23334444433 56699999999999999999999999987
No 222
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=28.18 E-value=32 Score=30.61 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhCCCCHHHHHHhcCCChhHHHHHHHHHHH--HHhhcC
Q 001047 1078 EHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID--LLAQIP 1144 (1174)
Q Consensus 1078 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~v~~Wa~G~~~~~i~~~t~l~eGd~vR~~rrl~d--ll~Qi~ 1144 (1174)
.+...+.++.+.+|++.+. ..+..+.+.+-.+.|+.||.+.+.++-|.+=|.+++|.+ ++....
T Consensus 10 ~~~~~~~~~~~~~Gl~~~~---~~i~~~L~~~~~plt~~ela~~l~vsk~~vs~~l~~L~~~GlV~r~~ 75 (151)
T d1ku9a_ 10 LIIELFSELAKIHGLNKSV---GAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVW 75 (151)
T ss_dssp HHHHHHHHHHHHTTCCHHH---HHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHcCCCHHH---HHHHHHHHhCCCCcCHHHHHHHhCCCcchHHHHHHHHHHCCCEEEEE
Confidence 3445567777889987432 234444444444579999999999999999999999998 665443
No 223
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.16 E-value=12 Score=35.75 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=14.8
Q ss_pred CcEEEEccCCcchHHHH
Q 001047 175 SSVVVSAPTSSGKTLIA 191 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~ 191 (1174)
|+|++.|++|+|||..+
T Consensus 1 k~V~ivG~~~~GKTsLl 17 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLF 17 (207)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 57999999999999753
No 224
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.11 E-value=13 Score=39.71 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=15.7
Q ss_pred CcEEEEccCCcchHHHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAEAA 194 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~~~ 194 (1174)
.-.+|.||+|||||.+....
T Consensus 26 ~l~~i~G~NGsGKS~ileAi 45 (427)
T d1w1wa_ 26 NFTSIIGPNGSGKSNMMDAI 45 (427)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 34588999999999876643
No 225
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}
Probab=27.86 E-value=13 Score=37.38 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=17.4
Q ss_pred HcCCcEEEEccCCcchHHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~~ 192 (1174)
..|+-+-+.+|.|||||+.+-
T Consensus 26 ~~GEi~~iiG~sGsGKSTLl~ 46 (258)
T d1b0ua_ 26 RAGDVISIIGSSGSGKSTFLR 46 (258)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 367788999999999997654
No 226
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=27.48 E-value=58 Score=31.51 Aligned_cols=70 Identities=11% Similarity=0.179 Sum_probs=47.5
Q ss_pred cCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC------------CCCcEEEE
Q 001047 182 PTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAIN------------REAQILIM 249 (1174)
Q Consensus 182 pTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~------------~~~~IlV~ 249 (1174)
...|||.....-.+.....+|.++||.+..+.-..-+...+.+.+| ..+..++|+.+.. ++..++++
T Consensus 65 ~~~S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~-~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~ 143 (244)
T d1z5za1 65 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELN-TEVPFLYGELSKKERDDIISKFQNNPSVKFIVL 143 (244)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHC-SCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEE
T ss_pred hhhhhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhcc-ceEEEEecccchhccchhhhhhhccccchhccc
Confidence 4568997665555555556788999999988877766666666555 4577788987532 24567777
Q ss_pred cHH
Q 001047 250 TTE 252 (1174)
Q Consensus 250 Tpe 252 (1174)
|+.
T Consensus 144 ~~~ 146 (244)
T d1z5za1 144 SVK 146 (244)
T ss_dssp ECC
T ss_pred ccc
Confidence 664
No 227
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}
Probab=26.37 E-value=23 Score=36.60 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=19.1
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhcCCeE
Q 001047 177 VVVSAPTSSGKTLIAEAAAVATVANQRRI 205 (1174)
Q Consensus 177 vlv~apTGsGKTlv~~~~il~~l~~g~rv 205 (1174)
+=|.+|.|+|||..-.-.+......|.++
T Consensus 54 igitG~pGaGKSTli~~l~~~~~~~g~~v 82 (323)
T d2qm8a1 54 VGITGVPGVGKSTTIDALGSLLTAAGHKV 82 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EeeeCCCCCCHHHHHHHHHHHHhhcCCce
Confidence 45789999999977655554444444433
No 228
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.21 E-value=12 Score=36.37 Aligned_cols=20 Identities=10% Similarity=0.227 Sum_probs=16.5
Q ss_pred CCcEEEEccCCcchHHHHHH
Q 001047 174 GSSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 174 g~~vlv~apTGsGKTlv~~~ 193 (1174)
.+-++|.|+.|||||+++-.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~ 21 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNI 21 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35688999999999988754
No 229
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=26.11 E-value=15 Score=36.64 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=14.2
Q ss_pred cEEEEccCCcchHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~ 192 (1174)
-.+++|++|||||.+..
T Consensus 25 ln~IvG~NGsGKStiL~ 41 (292)
T g1f2t.1 25 INLIIGQNGSGKSSLLD 41 (292)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 34899999999998754
No 230
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=25.60 E-value=74 Score=28.28 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=47.2
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCC
Q 001047 201 NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSES 269 (1174)
Q Consensus 201 ~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~ 269 (1174)
.+.++||.++++.-+.+++..|.+ .| ..+..++|+... +....|+|+|.- +.. ..
T Consensus 27 ~~~k~IIF~~s~~~~~~l~~~L~~-~g-~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T~~-----~~~-------Gi 92 (155)
T d1hv8a2 27 KEFYGLVFCKTKRDTKELASMLRD-IG-FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV-----MSR-------GI 92 (155)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHH-TT-CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT-----HHH-------HC
T ss_pred CCCCEEEEECchHHHHHHHhhhcc-cc-cccccccccchhhhhhhhhhhhhcccceeeeehhH-----Hhh-------hh
Confidence 355899999999999999998887 44 458888887652 346789999853 221 23
Q ss_pred CCCceeEEEE
Q 001047 270 GLFDVDVIVL 279 (1174)
Q Consensus 270 ~l~~v~lVIi 279 (1174)
.+..+++||.
T Consensus 93 d~~~v~~Vi~ 102 (155)
T d1hv8a2 93 DVNDLNCVIN 102 (155)
T ss_dssp CCSCCSEEEE
T ss_pred hhccCcEEEE
Confidence 4667888873
No 231
>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}
Probab=25.41 E-value=67 Score=29.29 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=46.1
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEEcHH
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTE 252 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~Tpe 252 (1174)
.+++++|.|.=|+||+.++.+. . .+.++.|+.-+.+=+.+..+.+... +. +..+.-+......++|+|-|+.
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~--~---~~~~i~I~nR~~~~a~~l~~~~~~~-~~--~~~~~~~~~~~~~~diiIN~tp 88 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLL--Q---AQQNIVLANRTFSKTKELAERFQPY-GN--IQAVSMDSIPLQTYDLVINATS 88 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHH--H---TTCEEEEEESSHHHHHHHHHHHGGG-SC--EEEEEGGGCCCSCCSEEEECCC
T ss_pred CCCEEEEECCcHHHHHHHHHHc--c---cCceeeeccchHHHHHHHHHHHhhc-cc--cchhhhccccccccceeeeccc
Confidence 5689999988888888776542 2 3567777777766666666666542 22 3334434334467888887653
No 232
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=25.16 E-value=47 Score=25.27 Aligned_cols=46 Identities=11% Similarity=0.118 Sum_probs=38.5
Q ss_pred CChhHHHHH-HHHhCCCCHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 001047 1098 LDSQFSGMV-EAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 1143 (1174)
Q Consensus 1098 ~~~~l~~~v-~~Wa~G~~~~~i~~~t~l~eGd~vR~~rrl~dll~Qi 1143 (1174)
+.+.--.++ ..|-.|.|+.||.+..++.++.+=+.+.|...-|+++
T Consensus 22 L~~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~~~ra~~~Lr~~ 68 (71)
T d1rp3a2 22 LPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERLREM 68 (71)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhHhCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 566666666 6688999999999999999999988888888877753
No 233
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.04 E-value=50 Score=30.09 Aligned_cols=67 Identities=7% Similarity=-0.063 Sum_probs=48.1
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCC
Q 001047 201 NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSES 269 (1174)
Q Consensus 201 ~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~ 269 (1174)
.+.++||.++++.-+..++..|.+ .| ..+..++|+.+. +...+|+|+|.- +. ...
T Consensus 26 ~~~k~iIF~~~~~~~~~l~~~L~~-~~-~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~~-----~~-------~Gi 91 (168)
T d1t5ia_ 26 EFNQVVIFVKSVQRCIALAQLLVE-QN-FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG-------RGM 91 (168)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHH-TT-CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CS-------TTC
T ss_pred CCCeEEEEEeeeecchhhhhhhcc-cc-ccccccccccchhhhhhhhhhhccccceeeecccc-----cc-------chh
Confidence 456899999999999999988887 34 458889998753 346789998832 22 234
Q ss_pred CCCceeEEEEcc
Q 001047 270 GLFDVDVIVLDE 281 (1174)
Q Consensus 270 ~l~~v~lVIiDE 281 (1174)
.+..+++||.=.
T Consensus 92 d~~~~~~vi~~~ 103 (168)
T d1t5ia_ 92 DIERVNIAFNYD 103 (168)
T ss_dssp CGGGCSEEEESS
T ss_pred hcccchhhhhhh
Confidence 566777776533
No 234
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}
Probab=24.88 E-value=14 Score=36.36 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=17.1
Q ss_pred HcCCcEEEEccCCcchHHHH
Q 001047 172 LRGSSVVVSAPTSSGKTLIA 191 (1174)
Q Consensus 172 l~g~~vlv~apTGsGKTlv~ 191 (1174)
.+|+-+-+.+|.|||||+.+
T Consensus 23 ~~Gei~~iiG~nGaGKSTLl 42 (231)
T d1l7vc_ 23 RAGEILHLVGPNGAGKSTLL 42 (231)
T ss_dssp ETTCEEECBCCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 46788899999999999864
No 235
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}
Probab=24.72 E-value=17 Score=33.42 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=25.6
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSN 216 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~ 216 (1174)
-+++.|+-|+|||+-.- .+++.+. ..--|.+||=.|++
T Consensus 35 ii~L~G~LGaGKTtfvr-~~~~~lg--~~~~V~SPTF~l~~ 72 (158)
T d1htwa_ 35 MVYLNGDLGAGKTTLTR-GMLQGIG--HQGNVKSPTYTLVE 72 (158)
T ss_dssp EEEEECSTTSSHHHHHH-HHHHHTT--CCSCCCCCTTTCEE
T ss_pred EEEEecCCCccHHHHHH-HHHhhcc--cccccCCCceEEEE
Confidence 46779999999996543 4445543 33347899966654
No 236
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}
Probab=24.61 E-value=15 Score=38.33 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=18.9
Q ss_pred HHHHHHcCCc--EEEEccCCcchHHHHH
Q 001047 167 SIEAFLRGSS--VVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 167 ai~~ll~g~~--vlv~apTGsGKTlv~~ 192 (1174)
.++.+++|.+ ++..|.||||||....
T Consensus 74 ~v~~~l~G~n~~i~aYGqtgSGKT~T~~ 101 (342)
T d1f9va_ 74 LVQSSLDGYNVCIFAYGQTGSGKTFTML 101 (342)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred hhcchhcccccceeeeeccCCccccccc
Confidence 4455667764 5678999999997653
No 237
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.27 E-value=64 Score=29.33 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=49.0
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-----------CCCCcEEEEcHHHHHHHHhcccccccCCC
Q 001047 201 NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-----------NREAQILIMTTEILRNMLYQSVGMVSSES 269 (1174)
Q Consensus 201 ~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~ 269 (1174)
...++||.+.++.-+...+..+.+ .| ..+..++|+... +....|+|+|.- +. ...
T Consensus 31 ~~~~~lIF~~~~~~~~~l~~~l~~-~~-~~~~~~hg~~~~~~R~~~~~~F~~g~~~ilv~Td~-----~~-------~Gi 96 (168)
T d2rb4a1 31 TIGQAIIFCQTRRNAKWLTVEMIQ-DG-HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----CA-------RGI 96 (168)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHT-TT-CCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----CC-------TTT
T ss_pred CCCcEEEEcCHHHHHHHHHHHHHh-cC-CcceecccchhhHHHHHHhhhhcCCceeeeechhh-----hh-------hhh
Confidence 456899999999999999988877 33 568999998763 346789998852 22 244
Q ss_pred CCCceeEEEE
Q 001047 270 GLFDVDVIVL 279 (1174)
Q Consensus 270 ~l~~v~lVIi 279 (1174)
.+.++.+||.
T Consensus 97 d~~~v~~Vi~ 106 (168)
T d2rb4a1 97 DVKQVTIVVN 106 (168)
T ss_dssp CCTTEEEEEE
T ss_pred ccccccEEEe
Confidence 5778888875
No 238
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=24.26 E-value=36 Score=26.18 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=15.2
Q ss_pred HHhcccC-CCCHHhHHHHHhhhcc
Q 001047 1026 LRNKILL-DLKPAQLAAVCASLVS 1048 (1174)
Q Consensus 1026 l~~g~~~-~L~p~~laA~~s~~v~ 1048 (1174)
+++.+++ ++++.|+||+|.++-.
T Consensus 23 ~~~~i~~g~~~d~qiaafL~al~~ 46 (69)
T d1khda1 23 LFAAIVRGELEDSQLAAALISMKM 46 (69)
T ss_dssp HHHHHTTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3444555 4788888888887654
No 239
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=23.95 E-value=16 Score=36.37 Aligned_cols=43 Identities=16% Similarity=0.046 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHh---cCCceEEEechhhhhcCCcCCceEEEe
Q 001047 507 AGCLPIWKSFIEELFQ---RGLVKVVFATETLAAGINMPARTAVLS 549 (1174)
Q Consensus 507 sgl~~~~R~~v~~~F~---~G~ikVLVAT~tla~GIDiP~v~vVI~ 549 (1174)
+|+.+..+..+.+.++ +...-||+.|.-+..=..+-+.-+|+.
T Consensus 179 ~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~ 224 (254)
T d1g6ha_ 179 AGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMF 224 (254)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEe
Confidence 5677776666655542 334678888877777777777777766
No 240
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=23.81 E-value=18 Score=36.72 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=14.4
Q ss_pred cEEEEccCCcchHHHHH
Q 001047 176 SVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 176 ~vlv~apTGsGKTlv~~ 192 (1174)
-.+++|+.|||||.+..
T Consensus 25 ~~vi~G~NgsGKTtile 41 (369)
T g1ii8.1 25 INLIIGQNGSGKSSLLD 41 (369)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46789999999998764
No 241
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=23.49 E-value=19 Score=35.49 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=13.9
Q ss_pred CcEEEEccCCcchHHHHH
Q 001047 175 SSVVVSAPTSSGKTLIAE 192 (1174)
Q Consensus 175 ~~vlv~apTGsGKTlv~~ 192 (1174)
.-+.+.+|.|||||+..-
T Consensus 25 e~~~liGpnGaGKSTll~ 42 (240)
T d2onka1 25 DYCVLLGPTGAGKSVFLE 42 (240)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCChHHHHHH
Confidence 345678999999997643
No 242
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=23.01 E-value=46 Score=31.54 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=32.0
Q ss_pred hHHHHHHHHhCCCCHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 001047 1101 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 1141 (1174)
Q Consensus 1101 ~l~~~v~~Wa~G~~~~~i~~~t~l~eGd~vR~~rrl~dll~ 1141 (1174)
-.+-+++.|.++.|..+|++.-++..||+-+......=++.
T Consensus 74 KtAl~L~dwi~E~~~~~I~~~y~v~~Gdl~~~~~~a~wl~~ 114 (198)
T d2p6ra2 74 KTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSN 114 (198)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 45567799999999999999999999998665544443333
No 243
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=22.85 E-value=55 Score=27.96 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=28.0
Q ss_pred HHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCC
Q 001047 431 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL 466 (1174)
Q Consensus 431 ~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~ 466 (1174)
..|..+.+....++|+.|.|....+.+.+.|...++
T Consensus 24 ~~L~~~i~~~~~~Vli~a~s~g~~erl~e~L~~~~i 59 (117)
T d2eyqa2 24 DALRKFLETFDGPVVFSVESEGRREALGELLARIKI 59 (117)
T ss_dssp HHHHHHHTTCCSCCCEEESSHHHHHHHHHHHGGGTC
T ss_pred HHHHHHHHhCCCeEEEEECCccHHHHHHHHHHHcCC
Confidence 334555555556899999999999999999997775
No 244
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=22.83 E-value=50 Score=33.43 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=39.0
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCC-------CCCCcEEEEcH
Q 001047 201 NQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI-------NREAQILIMTT 251 (1174)
Q Consensus 201 ~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~-------~~~~~IlV~Tp 251 (1174)
.+++++|.+|+..-+++++..+++. | ..|..++|.... +...+|+|+|.
T Consensus 35 ~~g~~~~F~~s~~~~~~~a~~L~~~-g-~~V~~l~~~~~~~e~~~~~~~~~~~~~~t~ 90 (299)
T d1yksa2 35 DKRPTAWFLPSIRAANVMAASLRKA-G-KSVVVLNRKTFEREYPTIKQKKPDFILATD 90 (299)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHT-T-CCEEECCSSSCC--------CCCSEEEESS
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc-C-CeEEEEcCcCcHhHHhhhhcCCcCEEEEec
Confidence 4778999999999999999999884 4 468889987542 24678999995
No 245
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=22.50 E-value=63 Score=28.18 Aligned_cols=73 Identities=10% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHhhccccHHHHhhHHHHHhhcCCc----cCCCC-----ccChhhHHHH-hhcCCchHHHHHHHHhcccCCCCHHhH
Q 001047 970 TKRIEQIEPSGWKEFLRISNVIHETRAL----DINTQ-----VIFPLGETAA-AIRGENELWLAMVLRNKILLDLKPAQL 1039 (1174)
Q Consensus 970 ~~~i~~~~~~~~~~f~~~~~VL~~lgyl----~~~~~-----~vt~~Gr~a~-~i~~~~eLllte~l~~g~~~~L~p~~l 1039 (1174)
..+|......-...-.+.++-|.+-||| ++++. .+|++|+... .+.. .+..-+.+-++.+++++|+
T Consensus 51 ~~ela~~~~i~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~~~~~----~~~~~~~~~~~~~l~~~e~ 126 (138)
T d1jgsa_ 51 PVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQ----LVGQDLHQELTKNLTADEV 126 (138)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHHH----HHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHCCCHhHHHHHHHHHhhCCCEEEeeccCCCCeeEEEECHHHHHHHHHHHH----HHHHHHHHHHHcCCCHHHH
Q ss_pred HHHHhhh
Q 001047 1040 AAVCASL 1046 (1174)
Q Consensus 1040 aA~~s~~ 1046 (1174)
+.+...+
T Consensus 127 ~~l~~~L 133 (138)
T d1jgsa_ 127 ATLEYLL 133 (138)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 246
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.41 E-value=88 Score=27.33 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=48.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCChh-HHHHHHHH-hCC-CCHHHHHHhcCCChhHHHHHHHHHHH
Q 001047 1065 PSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQ-FSGMVEAW-ASG-LTWREMMMDCALDDGDLARLLRRTID 1138 (1174)
Q Consensus 1065 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~-l~~~v~~W-a~G-~~~~~i~~~t~l~eGd~vR~~rrl~d 1138 (1174)
|+..-.+.+..|..+..++.....+..-. ..+.+. ++-+..-| ..| .|..+|.+...+..+.+-|.+.+|+.
T Consensus 1 p~~~~~~l~~~L~~~~~~i~~~~~~~~~~--~glt~~q~~vL~~L~~~~g~~t~~~La~~~~~~~~~vs~~i~~L~~ 75 (145)
T d2hr3a1 1 PTNQDLQLAAHLRSQVTTLTRRLRREAQA--DPVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER 75 (145)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45556667777777777777666554322 122222 33333344 455 79999999999999999999999975
No 247
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}
Probab=22.07 E-value=26 Score=40.26 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=22.8
Q ss_pred HHHHHHHH---cCCcEEEEccCCcchHHHHHHHH
Q 001047 165 RSSIEAFL---RGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 165 ~~ai~~ll---~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
..|+..+. +++.+|++|.+|||||..+-..+
T Consensus 74 ~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~k~il 107 (684)
T d1lkxa_ 74 NDAYRSMRQSQENQCVIISGESGAGKTEASKKIM 107 (684)
T ss_dssp HHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 35555554 34589999999999998876544
No 248
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=22.04 E-value=49 Score=31.23 Aligned_cols=58 Identities=5% Similarity=0.054 Sum_probs=39.9
Q ss_pred HHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCC----------------------------CeEEEEeCCCCC------
Q 001047 195 AVATVANQRRIFYTTPLKALSNQKFREFRETFGD----------------------------NNVGLLTGDSAI------ 240 (1174)
Q Consensus 195 il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~----------------------------~~v~lltGd~~~------ 240 (1174)
+.+.+.++..+||.+|+|.-+...+..+.+.... ..|+.++|+.+.
T Consensus 33 ~~~~i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~i 112 (201)
T d2p6ra4 33 VEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVV 112 (201)
T ss_dssp HHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHH
T ss_pred HHHHHHcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHH
Confidence 4556677888999999987777777666653211 127788887652
Q ss_pred -----CCCCcEEEEcHH
Q 001047 241 -----NREAQILIMTTE 252 (1174)
Q Consensus 241 -----~~~~~IlV~Tpe 252 (1174)
+...+|+|+|..
T Consensus 113 e~~f~~g~i~vlvaT~~ 129 (201)
T d2p6ra4 113 EDAFRRGNIKVVVATPT 129 (201)
T ss_dssp HHHHHTTSCCEEEECST
T ss_pred HHHHhCCCceEEEechH
Confidence 356889999974
No 249
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.66 E-value=1.6e+02 Score=27.83 Aligned_cols=76 Identities=13% Similarity=-0.114 Sum_probs=51.5
Q ss_pred CCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCCccchhhHHhhhccceeEecCCCCHHHHHHHHH
Q 001047 440 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEE 519 (1174)
Q Consensus 440 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~ 519 (1174)
....++|+++++.-|..+++.+...+- .....+...+||.........+.
T Consensus 84 ~~~~~lil~PtreLa~Qi~~~~~~l~~------------------------------~~~i~~~~~~g~~~~~~~~~~l~ 133 (222)
T d2j0sa1 84 RETQALILAPTRELAVQIQKGLLALGD------------------------------YMNVQCHACIGGTNVGEDIRKLD 133 (222)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTT------------------------------TTTCCEEEECTTSCHHHHHHHHH
T ss_pred cCceeEEecchHHHHHHHHHHHHHHhC------------------------------ccceeEEEEeecccchhhHHHhc
Confidence 345699999999999988877764321 12235777888887665544432
Q ss_pred HHhcCCceEEEechh------hhhcCCcCCceEEEe
Q 001047 520 LFQRGLVKVVFATET------LAAGINMPARTAVLS 549 (1174)
Q Consensus 520 ~F~~G~ikVLVAT~t------la~GIDiP~v~vVI~ 549 (1174)
.| ..|||+|.- -...+++..+.++|.
T Consensus 134 ---~~-~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVl 165 (222)
T d2j0sa1 134 ---YG-QHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 165 (222)
T ss_dssp ---HC-CSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ---cC-CeEEeCCCCcHHhcccccccccccceeeee
Confidence 33 589999963 256677888877765
No 250
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}
Probab=21.52 E-value=27 Score=40.27 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=22.8
Q ss_pred HHHHHHHH---cCCcEEEEccCCcchHHHHHHHH
Q 001047 165 RSSIEAFL---RGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 165 ~~ai~~ll---~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
..|+..+. +++.+|++|.+|||||...-+.+
T Consensus 113 ~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~k~il 146 (712)
T d1d0xa2 113 DVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 146 (712)
T ss_dssp HHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceEEEeCCCCCCHHHHHHHHH
Confidence 35555555 34689999999999998875544
No 251
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}
Probab=20.98 E-value=21 Score=35.21 Aligned_cols=43 Identities=7% Similarity=0.123 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHhc---CCceEEEechhhhhcCCcCCceEEEe
Q 001047 507 AGCLPIWKSFIEELFQR---GLVKVVFATETLAAGINMPARTAVLS 549 (1174)
Q Consensus 507 sgl~~~~R~~v~~~F~~---G~ikVLVAT~tla~GIDiP~v~vVI~ 549 (1174)
+||.+..+..+.+.+++ -..-||++|.-+..=..+-+.-+|++
T Consensus 162 ~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~ 207 (238)
T d1vpla_ 162 SGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIH 207 (238)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 56666666666555532 23578888877777667766666665
No 252
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.71 E-value=28 Score=33.80 Aligned_cols=28 Identities=14% Similarity=0.383 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCcEEEEccCCcchHHH
Q 001047 163 FQRSSIEAFLRGSSVVVSAPTSSGKTLI 190 (1174)
Q Consensus 163 ~Q~~ai~~ll~g~~vlv~apTGsGKTlv 190 (1174)
...+.+..++.|+..++.|++|.|||..
T Consensus 84 ~g~~~L~~~l~~kt~~~~G~SGVGKSTL 111 (225)
T d1u0la2 84 MGIEELKEYLKGKISTMAGLSGVGKSSL 111 (225)
T ss_dssp TTHHHHHHHHSSSEEEEECSTTSSHHHH
T ss_pred hhHhhHHHHhcCCeEEEECCCCCCHHHH
Confidence 4456677778999999999999999953
No 253
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=20.67 E-value=19 Score=37.28 Aligned_cols=19 Identities=32% Similarity=0.365 Sum_probs=14.9
Q ss_pred cCCc--EEEEccCCcchHHHH
Q 001047 173 RGSS--VVVSAPTSSGKTLIA 191 (1174)
Q Consensus 173 ~g~~--vlv~apTGsGKTlv~ 191 (1174)
+|.+ ++..|.||||||...
T Consensus 82 ~G~n~~i~aYGqTGSGKTyTm 102 (330)
T d1ry6a_ 82 NGCVCSCFAYGQTGSGKTYTM 102 (330)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred cCCCeEEEeeeccccccceee
Confidence 5765 567799999999764
No 254
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.54 E-value=48 Score=31.55 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=24.3
Q ss_pred cCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q 001047 173 RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPL 211 (1174)
Q Consensus 173 ~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~Pt 211 (1174)
+|+-+++.|+-|||||++.-.. .+.+.. ...++..|.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L-~~~L~~-~~~~~~~p~ 38 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNIL-YKKLQP-NCKLLKFPE 38 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHH-HHHTTT-SEEEEESSC
T ss_pred CeEEEEEECCCCCcHHHHHHHH-HHHHHh-CCEEEEECC
Confidence 4677889999999999987543 334433 334445553
No 255
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}
Probab=20.46 E-value=29 Score=33.10 Aligned_cols=27 Identities=26% Similarity=0.690 Sum_probs=19.4
Q ss_pred HHHHHHcC----CcEEEEccCCcchHHHHHH
Q 001047 167 SIEAFLRG----SSVVVSAPTSSGKTLIAEA 193 (1174)
Q Consensus 167 ai~~ll~g----~~vlv~apTGsGKTlv~~~ 193 (1174)
++..++.| +-+++.||.++|||+.+..
T Consensus 42 ~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~s 72 (205)
T d1tuea_ 42 ALKSFLKGTPKKNCLVFCGPANTGKSYFGMS 72 (205)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHHHH
T ss_pred HHHHHHcCCCCceEEEEECCCCccHHHHHHH
Confidence 44445544 4577899999999987654
No 256
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=20.21 E-value=30 Score=39.93 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=23.6
Q ss_pred HHHHHHHHHHc---CCcEEEEccCCcchHHHHHHHH
Q 001047 163 FQRSSIEAFLR---GSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 163 ~Q~~ai~~ll~---g~~vlv~apTGsGKTlv~~~~i 195 (1174)
+=..|+..+.. ++.+|++|.+|||||...-+.+
T Consensus 77 vA~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~k~il 112 (710)
T d1br2a2 77 IADTAYRSMLQDREDQSILCTGESGAGKTENTKKVI 112 (710)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34456665553 4679999999999998865543
No 257
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=20.20 E-value=29 Score=40.56 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=23.1
Q ss_pred HHHHHHHHH---cCCcEEEEccCCcchHHHHHHHH
Q 001047 164 QRSSIEAFL---RGSSVVVSAPTSSGKTLIAEAAA 195 (1174)
Q Consensus 164 Q~~ai~~ll---~g~~vlv~apTGsGKTlv~~~~i 195 (1174)
=..|+..+. .++.+|++|.+|||||...-..+
T Consensus 110 A~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il 144 (794)
T d2mysa2 110 SDNAYQFMLTDRENQSILITGESGAGKTVNTKRVI 144 (794)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 335665555 23579999999999998876544
Done!