BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001048
(1174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 105/253 (41%), Gaps = 42/253 (16%)
Query: 595 NQTRLQLLSDITGTFRPGILTALMGVSGAGKTT-------LMDVLSGRKTXXXXXXXXXX 647
++ +Q+L + + G AL+G SG GK+T L D L G +
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN 458
Query: 648 XXYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKA-EFVNEVLQ 706
Y + I G Q + T+ E+I + R +D KA + N
Sbjct: 459 VRYLR------EIIGVVSQEPVLFAT-TIAENIRYG---REDVTMDEIEKAVKEANAYDF 508
Query: 707 TIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766
++L D+LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A V
Sbjct: 509 IMKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567
Query: 767 AVKNVVETGRTVVCTIHQPSI----DIFEAFDDLVLMKNGG-------RIIYFG------ 809
A+ E GRT + H+ S D+ FD V+++ G + IYF
Sbjct: 568 ALDKARE-GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626
Query: 810 -----PLGQHSCK 817
LG +CK
Sbjct: 627 AGNEIELGNEACK 639
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Query: 37 DYILKILGLDICADTMVGDPMRRG--VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSS 94
D+I+K L DT+VG+ RG +SGGQK+R+ +V + L +DE ++ LD+
Sbjct: 507 DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 560
Query: 95 T 95
+
Sbjct: 561 S 561
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 50 DTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 109
+T VGD + +SGGQK+R+ +V L +DE ++ LD+ + + L
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREG 1220
Query: 110 TDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+ L T D ++++ GK+ HG
Sbjct: 1221 RTCIVIAHRL----STIQNADLIVVIQNGKVKEHG 1251
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 105/253 (41%), Gaps = 42/253 (16%)
Query: 595 NQTRLQLLSDITGTFRPGILTALMGVSGAGKTT-------LMDVLSGRKTXXXXXXXXXX 647
++ +Q+L + + G AL+G SG GK+T L D L G +
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN 458
Query: 648 XXYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKA-EFVNEVLQ 706
Y + I G Q + T+ E+I + R +D KA + N
Sbjct: 459 VRYLR------EIIGVVSQEPVLFAT-TIAENIRYG---REDVTMDEIEKAVKEANAYDF 508
Query: 707 TIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766
++L D+LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A V
Sbjct: 509 IMKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567
Query: 767 AVKNVVETGRTVVCTIHQPSI----DIFEAFDDLVLMKNGG-------RIIYFG------ 809
A+ E GRT + H+ S D+ FD V+++ G + IYF
Sbjct: 568 ALDKARE-GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626
Query: 810 -----PLGQHSCK 817
LG +CK
Sbjct: 627 AGNEIELGNEACK 639
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Query: 37 DYILKILGLDICADTMVGDPMRRG--VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSS 94
D+I+K L DT+VG+ RG +SGGQK+R+ +V + L +DE ++ LD+
Sbjct: 507 DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 560
Query: 95 T 95
+
Sbjct: 561 S 561
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 50 DTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 109
+T VGD + +SGGQK+R+ +V L +DE ++ LD+ + + L
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREG 1220
Query: 110 TDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+ L T D ++++ GK+ HG
Sbjct: 1221 RTCIVIAHRL----STIQNADLIVVIQNGKVKEHG 1251
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 23/214 (10%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 660
+L D+ F G + ++G +G+GKTTL+ +L+G P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG---LLAAAGEIFLDGSPADPFLLRKN 82
Query: 661 SGYCEQN-DIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG 719
GY QN TVEE + FS +I ++E + + +EL G L G
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFS------LEIMGLDESEMRKRIKKVLELVG----LSG 132
Query: 720 LPGVN--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT 777
L + LS Q++RL IA L + + +DEP S LD + + + ++++ G+
Sbjct: 133 LAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKG 192
Query: 778 VVCTIHQPSIDIFEAFDDL--VLMKNGGRIIYFG 809
++ H+ E DD+ +L + G I + G
Sbjct: 193 IILVTHE-----LEYLDDMDFILHISNGTIDFCG 221
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 29 GLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEIS 88
GL+ S I K+L L + DP+ +SGGQK+RL ++ TR L +DE
Sbjct: 111 GLDESEMRKRIKKVLELVGLSGLAAADPLN--LSGGQKQRLAIASMLARDTRFLALDEPV 168
Query: 89 NGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+ LD + +I L+ L + L++ E D D ++ ++ G I + G
Sbjct: 169 SMLDPPSQREIFQVLESLKNEGKGIILVT---HELEYLDDMDFILHISNGTIDFCG 221
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 59.7 bits (143), Expect = 9e-09, Method: Composition-based stats.
Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 28/222 (12%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS-------GRKTXXXXXXXXXXXXYP 651
L++L I R G + ++G SG+GK+T + L+ G
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 652 KVQH----TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQT 707
KV+ F R + + P++TV +I + + + + KAE + ++
Sbjct: 76 KVREEVGMVFQRFNLF--------PHMTVLNNITLAP---MKVRKWPREKAE--AKAMEL 122
Query: 708 IELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA 767
++ G+KD P + LS Q +R+ IA L P I+ DEPTS LD V+
Sbjct: 123 LDKVGLKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSV 180
Query: 768 VKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
+K + G T+V H+ + D VL +GG II G
Sbjct: 181 MKQLANEGMTMVVVTHE--MGFAREVGDRVLFMDGGYIIEEG 220
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGGQ +R+ + + + DE ++ LD +++S +K L + + ++ +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN--EGMTMVVVTH 196
Query: 121 PAPETFDLFDDVILMAEGKIVYHG 144
++ D V+ M G I+ G
Sbjct: 197 EMGFAREVGDRVLFMDGGYIIEEG 220
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 59.7 bits (143), Expect = 9e-09, Method: Composition-based stats.
Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 28/222 (12%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS-------GRKTXXXXXXXXXXXXYP 651
L++L I R G + ++G SG+GK+T + L+ G
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 652 KVQH----TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQT 707
KV+ F R + + P++TV +I + + + + KAE + ++
Sbjct: 97 KVREEVGMVFQRFNLF--------PHMTVLNNITLAP---MKVRKWPREKAE--AKAMEL 143
Query: 708 IELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA 767
++ G+KD P + LS Q +R+ IA L P I+ DEPTS LD V+
Sbjct: 144 LDKVGLKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSV 201
Query: 768 VKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
+K + G T+V H+ + D VL +GG II G
Sbjct: 202 MKQLANEGMTMVVVTHE--MGFAREVGDRVLFMDGGYIIEEG 241
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGGQ +R+ + + + DE ++ LD +++S +K L + + ++ +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN--EGMTMVVVTH 217
Query: 121 PAPETFDLFDDVILMAEGKIVYHG 144
++ D V+ M G I+ G
Sbjct: 218 EMGFAREVGDRVLFMDGGYIIEEG 241
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 61/222 (27%), Positives = 97/222 (43%), Gaps = 17/222 (7%)
Query: 594 FNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKV 653
F + ++ L ++ G ++G SGAGKTT M +++G
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Query: 654 QHTFA----RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE 709
R G Q PN+T E+I F ++ + + + E V ++L
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILD--- 129
Query: 710 LDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
I L P LS Q++R+ +A LV +PS++ +DEP S LDAR + VK
Sbjct: 130 ---IHHVLNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVK 184
Query: 770 NV-VETGRTVVCTIHQPSIDIFEAFDDL-VLMKNGGRIIYFG 809
V G T++ H P+ DIF D + VL+K G+++ G
Sbjct: 185 EVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK--GKLVQVG 223
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 59 RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISL 118
R +SG Q++R+ +V L +DE + LD+ + +K + T L+
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 119 LQPAPETFDLFDDVILMAEGKIVYHG 144
PA + F + D V ++ +GK+V G
Sbjct: 199 HDPA-DIFAIADRVGVLVKGKLVQVG 223
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 21/205 (10%)
Query: 612 GILTALMGVSGAGKTTLM-------DVLSGRKTXXXXXXXXXXXXYPKVQHTFARISGYC 664
G AL+G SG GK+T++ DVL G+ T + F R +
Sbjct: 444 GQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVR-------DINLEFLRKNVAV 496
Query: 665 EQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724
+ N T+EE+I ++ + K + ++T L ++LVG G
Sbjct: 497 VSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKT--LPNGYNTLVGDRGTQ 554
Query: 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQ 784
LS Q++R+ IA LV NP I+ +DE TS LDA + V +A+ + GRT + H+
Sbjct: 555 -LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHR 612
Query: 785 PSIDIFEAFDDLVLMKNGGRIIYFG 809
S I A DL++ G+++ G
Sbjct: 613 LST-IRNA--DLIISCKNGQVVEVG 634
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 18/211 (8%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTXXXXXXXXXXXXYP 651
+++L ++ + PG AL+G SG GK+T++ D L G P
Sbjct: 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE---IFIDGSEIKTLNP 1148
Query: 652 KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD 711
+HT ++I+ ++ + + ++ E+I++ T + A N EL
Sbjct: 1149 --EHTRSQIAIVSQEPTLF--DCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELP 1204
Query: 712 GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV 771
++ VG G LS Q++R+ IA LV NP I+ +DE TS LD + V A+
Sbjct: 1205 EGFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRA 1263
Query: 772 VETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
E GRT + H+ ++ D + ++ NG
Sbjct: 1264 RE-GRTCIVIAHR--LNTVMNADCIAVVSNG 1291
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 50 DTMVGDPMRRG--VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSST 95
+T+VGD RG +SGGQK+R+ +V + L +DE ++ LD+ +
Sbjct: 545 NTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES 589
Score = 33.1 bits (74), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 50 DTMVGDPMRRG--VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSST 95
+T VGD RG +SGGQK+R+ +V + L +DE ++ LD+ +
Sbjct: 1208 ETRVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 20/216 (9%)
Query: 594 FNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTXXXXXXXXX 646
+N +L DI + G A +G+SG GK+TL+ DV SG+
Sbjct: 349 YNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF 408
Query: 647 XXXYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQ 706
+ Q G +Q++I + TV+E+I+ ++ K ++ +
Sbjct: 409 LTGSLRNQ------IGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFI- 460
Query: 707 TIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766
+ L D+ VG GV LS Q++RL+IA + NP I+ +DE TS LD + + +
Sbjct: 461 -MNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 518
Query: 767 AVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
A+ +V+ RT + H+ S D +V+++NG
Sbjct: 519 AL-DVLSKDRTTLIVAHRLS--TITHADKIVVIENG 551
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 42 ILGLDICADTMVGDPMRRGV--SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQI 99
I+ L DT VG+ RGV SGGQK+RL+ + + L +DE ++ LD + I
Sbjct: 460 IMNLPQGYDTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 516
Query: 100 VSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
L L D T LI + T D ++++ G IV G
Sbjct: 517 QEALDVLS--KDRTTLI--VAHRLSTITHADKIVVIENGHIVETG 557
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 61/222 (27%), Positives = 97/222 (43%), Gaps = 17/222 (7%)
Query: 594 FNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKV 653
F + ++ L ++ G ++G SGAGKTT M +++G
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Query: 654 QHTFA----RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE 709
R G Q PN+T E+I F ++ + + + E V ++L
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILD--- 129
Query: 710 LDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
I L P LS Q++R+ +A LV +PS++ +DEP S LDAR + VK
Sbjct: 130 ---IHHVLNHFP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVK 184
Query: 770 NV-VETGRTVVCTIHQPSIDIFEAFDDL-VLMKNGGRIIYFG 809
V G T++ H P+ DIF D + VL+K G+++ G
Sbjct: 185 EVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK--GKLVQVG 223
Score = 35.0 bits (79), Expect = 0.27, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 59 RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISL 118
R +SGGQ++R+ +V L +DE + LD+ + +K + T L+
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 119 LQPAPETFDLFDDVILMAEGKIVYHG 144
PA + F + D V ++ +GK+V G
Sbjct: 199 HDPA-DIFAIADRVGVLVKGKLVQVG 223
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 57.0 bits (136), Expect = 7e-08, Method: Composition-based stats.
Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 15/213 (7%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTXXXXXXXXXXXXYPK--VQHTF 657
L I + G +TA++G +G GK+TL +G + + Y + +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 658 ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
I + D + +V + + F A ++ ++ + V+ L+ ++ +KD
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGA---VNMKLPEDEIRKRVDNALKRTGIEHLKDK- 139
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR-AVKNVVETGR 776
+ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ V+ E G
Sbjct: 140 ----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195
Query: 777 TVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
T++ H IDI + D V + GR+I G
Sbjct: 196 TIIIATH--DIDIVPLYCDNVFVMKEGRVILQG 226
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 26/158 (16%)
Query: 3 VIKLEKLAGI-FPDPD---------VDAYMKAISAEGLENSLQ--TDYILKILGLDICAD 50
++KL + GI F DPD D A++ + E+ ++ D LK G++
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE---- 134
Query: 51 TMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHIT 110
+ D +S GQKKR+ ++V + L +DE + GLD +I+ L +
Sbjct: 135 -HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL 193
Query: 111 DATALISLLQPAPETFDLF----DDVILMAEGKIVYHG 144
T +I A D+ D+V +M EG+++ G
Sbjct: 194 GITIII-----ATHDIDIVPLYCDNVFVMKEGRVILQG 226
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
+++VG G GLS QR+R+ IA LV NP I+ DE TS LD + +MR + + +
Sbjct: 132 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK- 189
Query: 775 GRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
GRTV+ H+ S + D +++M+ G
Sbjct: 190 GRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 50 DTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 109
+T+VG+ G+SGGQ++R+ +V + L DE ++ LD + I ++++ I
Sbjct: 132 NTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 187
Query: 110 TDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+I ++ T D +I+M +GKIV G
Sbjct: 188 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQG 221
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
+++VG G GLS QR+R+ IA LV NP I+ DE TS LD + +MR + + +
Sbjct: 132 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK- 189
Query: 775 GRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
GRTV+ H+ S + D +++M+ G
Sbjct: 190 GRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 50 DTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 109
+T+VG+ G+SGGQ++R+ +V + L DE ++ LD + I ++++ I
Sbjct: 132 NTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 187
Query: 110 TDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+I ++ T D +I+M +GKIV G
Sbjct: 188 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQG 221
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
+++VG G GLS QR+R+ IA LV NP I+ DE TS LD + +MR + + +
Sbjct: 130 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK- 187
Query: 775 GRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
GRTV+ H+ S + D +++M+ G
Sbjct: 188 GRTVIIIAHRLS--TVKNADRIIVMEKG 213
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 50 DTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 109
+T+VG+ G+SGGQ++R+ +V + L DE ++ LD + I ++++ I
Sbjct: 130 NTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 185
Query: 110 TDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+I ++ T D +I+M +GKIV G
Sbjct: 186 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQG 219
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
+++VG G GLS QR+R+ IA LV NP I+ DE TS LD + +MR + + +
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK- 193
Query: 775 GRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
GRTV+ H+ S + D +++M+ G
Sbjct: 194 GRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 50 DTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 109
+T+VG+ G+SGGQ++R+ +V + L DE ++ LD + I ++++ I
Sbjct: 136 NTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 191
Query: 110 TDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+I ++ T D +I+M +GKIV G
Sbjct: 192 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQG 225
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 9/203 (4%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFAR 659
++L I+ G + L+G +GAGKTT + ++S + H +
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK 88
Query: 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG 719
+ Y + N+ E + F A S+ + + E E+ E IKD
Sbjct: 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE--KIKDR--- 143
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVV 779
V+ S ++L IA L+ NP + +DEPTSGLD A V + +K + G T++
Sbjct: 144 ---VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 200
Query: 780 CTIHQPSIDIFEAFDDLVLMKNG 802
+ H +++ D + L+ NG
Sbjct: 201 VSSHN-MLEVEFLCDRIALIHNG 222
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
+++VG G GLS QR+R+ IA LV NP I+ D+ TS LD + +MR + + +
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK- 193
Query: 775 GRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
GRTV+ H+ S + D +++M+ G
Sbjct: 194 GRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 50 DTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 109
+T+VG+ G+SGGQ++R+ +V + L D+ ++ LD + I ++++ I
Sbjct: 136 NTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI---MRNMHKI 191
Query: 110 TDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+I ++ T D +I+M +GKIV G
Sbjct: 192 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQG 225
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 23/204 (11%)
Query: 595 NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQ 654
N +Q+L +T T PG +TAL+G +G+GK+T+ +L + P VQ
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQ 85
Query: 655 HTFARISGYCEQNDIHSPNITV-EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI 713
+ + + +H+ V +E ++F R + T+ + E+ G
Sbjct: 86 Y---------DHHYLHTQVAAVGQEPLLFGRSFRENIAY-GLTRTPTMEEITAVAMESGA 135
Query: 714 KDSLVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
D + G P N LS QR+ + +A L+ P ++ +D+ TS LDA V
Sbjct: 136 HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRV 195
Query: 765 MRAVKNVVE-TGRTVVCTIHQPSI 787
R + E RTV+ HQ S+
Sbjct: 196 QRLLYESPEWASRTVLLITHQLSL 219
Score = 30.4 bits (67), Expect = 6.0, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 22 MKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRA 81
M+ I+A +E+ D+I G DT VG+ + +SGGQ++ + ++ R
Sbjct: 123 MEEITAVAMESGAH-DFIS---GFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRL 177
Query: 82 LFMDEISNGLDSSTTFQIVSFL 103
L +D+ ++ LD+ ++ L
Sbjct: 178 LILDQATSALDAGNQLRVQRLL 199
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 16/211 (7%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARIS 661
L++I + G AL+G SG+GK+TL+ ++G ++ R
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK-DRNV 77
Query: 662 GYCEQNDIHSPNITVEESIVFSAWLRLS--TQIDSKTKAEFVNEVLQTIELDGIKDSLVG 719
G QN P++TV ++I F LR + +ID K V EV + + +D + L
Sbjct: 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK-----VREVAKMLHIDKL---LNR 129
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGRTV 778
P LS Q++R+ IA LV P ++ +DEP S LDA V +K + E G T
Sbjct: 130 YPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187
Query: 779 VCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
V H + + A D + + G I+ G
Sbjct: 188 VYVTHDQAEAL--AMADRIAVIREGEILQVG 216
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGGQ++R+ +V L +DE + LD+ ++ + LK L T + +
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT-VYVTH 192
Query: 121 PAPETFDLFDDVILMAEGKIVYHG 144
E + D + ++ EG+I+ G
Sbjct: 193 DQAEALAMADRIAVIREGEILQVG 216
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 37/221 (16%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVL-------------SGRKTXXXXXXXXXXX 648
L ++ + G ++MG SG+GK+T+++++ KT
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 649 XYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI 708
K+ F + N I P +T E++ + + + + + E L+
Sbjct: 81 RRDKIGFVFQQF------NLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA 132
Query: 709 ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV 768
EL+ N LS Q++R+ IA L NP II D+PT LD++ +M+ +
Sbjct: 133 ELE----ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLL 188
Query: 769 KNV-VETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808
K + E G+TVV H D+ + + G RIIY
Sbjct: 189 KKLNEEDGKTVVVVTH-----------DINVARFGERIIYL 218
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 11/226 (4%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 660
+L DIT +PG AL+G +G+GKTT++++L K++ + R
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRS 429
Query: 661 SGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL 720
S D + TV+E++ + +I K + ++ + +G + L
Sbjct: 430 SIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLP-EGYETVLTD- 487
Query: 721 PGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTV 778
NG LS QR+ L I +ANP I+ +DE TS +D + ++ A+ ++E G+T
Sbjct: 488 ---NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTS 543
Query: 779 VCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFEC 824
+ H+ + I A DL+++ G I+ G + K Y+E
Sbjct: 544 IIIAHRLNT-IKNA--DLIIVLRDGEIVEMGKHDELIQKRGFYYEL 586
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 18/206 (8%)
Query: 608 TFRPGILTALMGVSGAGKTTLMDVLSG--RKTXXXXXXXXXXXXY--PKVQHTFARISGY 663
T + G L+G SG GKTT + +++G T Y PK ++ Y
Sbjct: 34 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSY 93
Query: 664 CEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723
P++TV E+I F ++ + + + + E+LQ EL L P
Sbjct: 94 AVW-----PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LNRYPA- 141
Query: 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH 783
LS QR+R+ +A +V P ++ MDEP S LDA+ + +K + + + +
Sbjct: 142 -QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 200
Query: 784 QPSIDIFEAFDDLVLMKNGGRIIYFG 809
++ D + +M N G+++ G
Sbjct: 201 HDQVEAMTMGDRIAVM-NRGQLLQIG 225
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 27/142 (19%)
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGGQ++R+ IV L MDE + LD+ + + +K L T I +
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTH 201
Query: 121 PAPETFDLFDDVILMAEGKI--------VYHGP------------------LSYSCKFFE 154
E + D + +M G++ VY P +S + E
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNILEVSVGDGYLE 261
Query: 155 GCGFRCPDRKGVADFLQEVISR 176
G GFR + + D L++ + +
Sbjct: 262 GRGFRIELPQDLMDLLKDYVGK 283
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 18/206 (8%)
Query: 608 TFRPGILTALMGVSGAGKTTLMDVLSG--RKTXXXXXXXXXXXXY--PKVQHTFARISGY 663
T + G L+G SG GKTT + +++G T Y PK ++ Y
Sbjct: 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSY 92
Query: 664 CEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723
P++TV E+I F ++ + + + + E+LQ EL L P
Sbjct: 93 AVW-----PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LNRYPA- 140
Query: 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH 783
LS QR+R+ +A +V P ++ MDEP S LDA+ + +K + + + +
Sbjct: 141 -QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 199
Query: 784 QPSIDIFEAFDDLVLMKNGGRIIYFG 809
++ D + +M N G+++ G
Sbjct: 200 HDQVEAMTMGDRIAVM-NRGQLLQIG 224
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 27/142 (19%)
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGGQ++R+ IV L MDE + LD+ + + +K L T I +
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTH 200
Query: 121 PAPETFDLFDDVILMAEGKI--------VYHGP------------------LSYSCKFFE 154
E + D + +M G++ VY P +S + E
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNILEVSVGDGYLE 260
Query: 155 GCGFRCPDRKGVADFLQEVISR 176
G GFR + + D L++ + +
Sbjct: 261 GRGFRIELPQDLMDLLKDYVGK 282
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 123/289 (42%), Gaps = 62/289 (21%)
Query: 547 LKAATGPKR-----GERPL---AHRKMILPFEPLTVTFEDL--RYYVDIPSAMRKNGFNQ 596
++A+ KR E+P A + LP +V+FE++ RY+ +
Sbjct: 307 VRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDP--------- 357
Query: 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVL-------SGRKTXXXXXXXXXXXX 649
+LS + + +PG L A++G +G+GK+TLM+++ GR
Sbjct: 358 ----VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV--- 410
Query: 650 YPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE 709
K++ IS ++ + S T++E++ W R D E+++ +
Sbjct: 411 --KLKDLRGHISAVPQETVLFSG--TIKENL---KWGREDATDD---------EIVEAAK 454
Query: 710 LDGIKDSLVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 760
+ I D ++ LP G S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 455 IAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPIT 514
Query: 761 AATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
++ +K + T + T P+ D +L+ + G++ FG
Sbjct: 515 EKRILDGLKRYTKGCTTFIITQKIPT----ALLADKILVLHEGKVAGFG 559
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 59 RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISL 118
R SGGQK+RL+ +V + L +D+ ++ +D T +I+ LK T +
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY---TKGCTTFII 534
Query: 119 LQPAPETFDLFDDVILMAEGKIV---YHGPLSYSCK 151
Q P L D ++++ EGK+ H L CK
Sbjct: 535 TQKIPTAL-LADKILVLHEGKVAGFGTHKELLEHCK 569
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 98/204 (48%), Gaps = 11/204 (5%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARIS 661
L +I G AL+G SG+GK+T+ +++ + + ++T A +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLR 416
Query: 662 GYCE--QNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
++H N TV +I ++ + S QI+ + + + + ++D D+++
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFIN--KMDNGLDTVI 474
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTV 778
G GV LS QR+R+ IA L+ + I+ +DE TS LD + + A+ ++ RT
Sbjct: 475 GENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTS 532
Query: 779 VCTIHQPSIDIFEAFDDLVLMKNG 802
+ H+ S E D++V++++G
Sbjct: 533 LVIAHRLS--TIEKADEIVVVEDG 554
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 26 SAEGLENSLQTDYILKILG-LDICADTMVGDPMRRGV--SGGQKKRLTTGELIVGPTRAL 82
S E +E + + Y + + +D DT++G+ GV SGGQ++R+ ++ + L
Sbjct: 446 SREQIEEAARMAYAMDFINKMDNGLDTVIGE---NGVLLSGGQRQRIAIARALLRDSPIL 502
Query: 83 FMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVY 142
+DE ++ LD+ + I + L L + T+L+ + T + D+++++ +G IV
Sbjct: 503 ILDEATSALDTESERAIQAALDELQK--NRTSLV--IAHRLSTIEKADEIVVVEDGVIVE 558
Query: 143 HG 144
G
Sbjct: 559 RG 560
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 53.1 bits (126), Expect = 8e-07, Method: Composition-based stats.
Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 37/221 (16%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVL-------------SGRKTXXXXXXXXXXX 648
L ++ + G ++MG SG+GK+T+++++ KT
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 649 XYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI 708
K+ F + N I P +T E++ + + + + + E L+
Sbjct: 81 RRDKIGFVFQQF------NLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA 132
Query: 709 ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV 768
EL+ N LS Q++R+ IA L NP II D+PT LD++ +M+ +
Sbjct: 133 ELE----ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLL 188
Query: 769 KNV-VETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808
K + E G+TVV H D+ + + G RIIY
Sbjct: 189 KKLNEEDGKTVVVVTH-----------DINVARFGERIIYL 218
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 97/204 (47%), Gaps = 11/204 (5%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARIS 661
L +I G AL+G SG+GK+T+ +++ + + ++T A +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLR 416
Query: 662 GYCE--QNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
++H N TV +I ++ S QI+ + + + + ++D D+++
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN--KMDNGLDTII 474
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTV 778
G GV LS QR+R+ IA L+ + I+ +DE TS LD + + A+ ++ RT
Sbjct: 475 GENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTS 532
Query: 779 VCTIHQPSIDIFEAFDDLVLMKNG 802
+ H+ S E D++V++++G
Sbjct: 533 LVIAHRLS--TIEQADEIVVVEDG 554
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 26 SAEGLENSLQTDYILKILG-LDICADTMVGDPMRRGV--SGGQKKRLTTGELIVGPTRAL 82
S E +E + + Y + + +D DT++G+ GV SGGQ++R+ ++ + L
Sbjct: 446 SREQIEEAARMAYAMDFINKMDNGLDTIIGE---NGVLLSGGQRQRIAIARALLRDSPIL 502
Query: 83 FMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVY 142
+DE ++ LD+ + I + L L + T+L+ + T + D+++++ +G IV
Sbjct: 503 ILDEATSALDTESERAIQAALDELQK--NRTSLV--IAHRLSTIEQADEIVVVEDGIIVE 558
Query: 143 HGPLS 147
G S
Sbjct: 559 RGTHS 563
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 90/213 (42%), Gaps = 24/213 (11%)
Query: 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXX---XXXXXXYPKVQHTFARI 660
DI G +G SG GK+TL+ +++G +T P + R
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RG 76
Query: 661 SGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL 720
G Q+ P+++V E++ F L + + + V EVLQ L K
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP----- 131
Query: 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET--GRTV 778
LS QR+R+ I LVA PS+ +DEP S LDA A MR + + GRT+
Sbjct: 132 ---KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTM 187
Query: 779 VCTIHQPSIDIFEAFD--DLVLMKNGGRIIYFG 809
+ H D EA D +++ + GR+ G
Sbjct: 188 IYVTH----DQVEAMTLADKIVVLDAGRVAQVG 216
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 55 DPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATA 114
D + +SGGQ++R+ G +V +DE + LD++ Q+ + L H
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL-HKRLGRT 186
Query: 115 LISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+I + E L D ++++ G++ G
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 90/213 (42%), Gaps = 24/213 (11%)
Query: 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXX---XXXXXXYPKVQHTFARI 660
DI G +G SG GK+TL+ +++G +T P + R
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RG 76
Query: 661 SGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL 720
G Q+ P+++V E++ F L + + + V EVLQ L K
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP----- 131
Query: 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET--GRTV 778
LS QR+R+ I LVA PS+ +DEP S LDA A MR + + GRT+
Sbjct: 132 ---KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTM 187
Query: 779 VCTIHQPSIDIFEAFD--DLVLMKNGGRIIYFG 809
+ H D EA D +++ + GR+ G
Sbjct: 188 IYVTH----DQVEAMTLADKIVVLDAGRVAQVG 216
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 55 DPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATA 114
D + +SGGQ++R+ G +V +DE + LD++ Q+ + L H
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL-HKRLGRT 186
Query: 115 LISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+I + E L D ++++ G++ G
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
+++VG G GLS QR+R+ IA LV NP I+ DE TS LD + +MR + + +
Sbjct: 130 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK- 187
Query: 775 GRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
GRTV+ I + + D +++M+ G
Sbjct: 188 GRTVI--IIAARLSTVKNADRIIVMEKG 213
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 50 DTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 109
+T+VG+ G+SGGQ++R+ +V + L DE ++ LD + I ++++ I
Sbjct: 130 NTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 185
Query: 110 TDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+I ++ T D +I+M +GKIV G
Sbjct: 186 CKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQG 219
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
+++VG G GLS QR+R+ IA LV NP I+ DE TS LD + +MR + + +
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK- 193
Query: 775 GRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
GRTV+ I + + D +++M+ G
Sbjct: 194 GRTVI--IIAARLSTVKNADRIIVMEKG 219
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 50 DTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 109
+T+VG+ G+SGGQ++R+ +V + L DE ++ LD + I ++++ I
Sbjct: 136 NTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 191
Query: 110 TDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+I ++ T D +I+M +GKIV G
Sbjct: 192 CKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQG 225
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 104/216 (48%), Gaps = 22/216 (10%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTXXXXXXXXXXXXYPKVQ 654
LS ++ + G AL+G SG+GK+T+ DV SG + ++
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSG--SICLDGHDVRDYKLTNLR 416
Query: 655 HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGI 713
FA +S ++H N T+ +I ++A + QI+ + E ++ + G+
Sbjct: 417 RHFALVS-----QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMP-QGL 470
Query: 714 KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE 773
D+++G G + LS QR+R+ IA L+ + ++ +DE TS LD + + A+ ++
Sbjct: 471 -DTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE-LQ 527
Query: 774 TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
+TV+ H+ S I +A D +L+ + G II G
Sbjct: 528 KNKTVLVIAHRLST-IEQA--DEILVVDEGEIIERG 560
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 50 DTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 109
DT++G+ +SGGQ++R+ ++ L +DE ++ LD+ + I + L L
Sbjct: 471 DTVIGEN-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK- 528
Query: 110 TDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+ T L+ + T + D+++++ EG+I+ G
Sbjct: 529 -NKTVLV--IAHRLSTIEQADEILVVDEGEIIERG 560
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 8/211 (3%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 660
+ D + + G +TAL+G SG+GK+T++ +L ++ + R
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418
Query: 661 S-GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTK-AEFVNEVLQTIELDGIKDSLV 718
G Q I + ++ E+I + A S + + AE N V +++V
Sbjct: 419 KIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTV 778
G GV LS Q++R+ IA L+ NP I+ +DE TS LDA V A+ +++ GRTV
Sbjct: 478 GEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTV 535
Query: 779 VCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
+ H+ S I A ++V + + G+I +G
Sbjct: 536 LVIAHRLST-IKNA--NMVAVLDQGKITEYG 563
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 50 DTMVGDPMRRGV--SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLV 107
+T+VG+ +GV SGGQK+R+ ++ + L +DE ++ LD+ + + L L+
Sbjct: 474 NTVVGE---KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM 530
Query: 108 HITDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+ L T + V ++ +GKI +G
Sbjct: 531 DGRTVLVIAHRLS----TIKNANMVAVLDQGKITEYG 563
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV-VETGRTVVCTI 782
N LS Q++R+ IA L NP II DEPT LD++ + + +K + E G+TVV
Sbjct: 144 NQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVT 203
Query: 783 HQPSIDIFEAFDDLVLMKNGGRIIYF 808
H D+ + + G RIIY
Sbjct: 204 H-----------DINVARFGERIIYL 218
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 8/211 (3%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 660
+ D + + G +TAL+G SG+GK+T++ +L ++ + R
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 449
Query: 661 S-GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTK-AEFVNEVLQTIELDGIKDSLV 718
G Q I + ++ E+I + A S + + AE N V +++V
Sbjct: 450 KIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 508
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTV 778
G GV LS Q++R+ IA L+ NP I+ +DE TS LDA V A+ +++ GRTV
Sbjct: 509 GEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTV 566
Query: 779 VCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
+ H S I A ++V + + G+I +G
Sbjct: 567 LVIAHHLST-IKNA--NMVAVLDQGKITEYG 594
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 50 DTMVGDPMRRGV--SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLV 107
+T+VG+ +GV SGGQK+R+ ++ + L +DE ++ LD+ + + L L+
Sbjct: 505 NTVVGE---KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM 561
Query: 108 HITDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+ L T + V ++ +GKI +G
Sbjct: 562 DGRTVLVIAHHLS----TIKNANMVAVLDQGKITEYG 594
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 90/213 (42%), Gaps = 24/213 (11%)
Query: 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXX---XXXXXXYPKVQHTFARI 660
DI G +G SG GK+TL+ +++G +T P + R
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RG 76
Query: 661 SGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL 720
G Q+ P+++V E++ F L + + + V EVLQ L K
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP----- 131
Query: 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET--GRTV 778
LS QR+R+ I LVA PS+ +D+P S LDA A MR + + GRT+
Sbjct: 132 ---KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTM 187
Query: 779 VCTIHQPSIDIFEAFD--DLVLMKNGGRIIYFG 809
+ H D EA D +++ + GR+ G
Sbjct: 188 IYVTH----DQVEAMTLADKIVVLDAGRVAQVG 216
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 55 DPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATA 114
D + +SGGQ++R+ G +V +D+ + LD++ Q+ + L H
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRL-HKRLGRT 186
Query: 115 LISLLQPAPETFDLFDDVILMAEGKIVYHG 144
+I + E L D ++++ G++ G
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQ 784
LS Q++R++IA L P ++ DEPTS LD V+R ++ + E G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 13/190 (6%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS--GRKTXXXXXXXXXXXXYPKVQHTF 657
++L I+ + + G +++G SG+GK+TL+ +L T Y +
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77
Query: 658 A---RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIK 714
R G+ Q P +T E+++ + ++K + E++ L G+
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL------GLG 131
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
D L P LS +++R+ IA L P ++F DEPT LD+ VM + E
Sbjct: 132 DKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189
Query: 775 GRTVVCTIHQ 784
G ++V H+
Sbjct: 190 GTSIVMVTHE 199
Score = 37.4 bits (85), Expect = 0.045, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 16/109 (14%)
Query: 37 DYILKILGLDICADTMVGDPMRRG---VSGGQKKRLTTGELIVGPTRALFMDEISNGLDS 93
+Y+L LGL GD + R +SGG+++R+ + LF DE + LDS
Sbjct: 122 EYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDS 173
Query: 94 STTFQIVS-FLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIV 141
+ T +++ FLK I + I ++ E +L + M +GK+V
Sbjct: 174 ANTKRVMDIFLK----INEGGTSIVMVTHERELAELTHRTLEMKDGKVV 218
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 23/204 (11%)
Query: 595 NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQ 654
N +Q+L +T T PG +TAL+G +G+GK+T+ +L + P VQ
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQ 85
Query: 655 HTFARISGYCEQNDIHSPNITV-EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI 713
+ + + +H+ V +E ++F R + T+ + E+ G
Sbjct: 86 Y---------DHHYLHTQVAAVGQEPLLFGRSFRENIAY-GLTRTPTMEEITAVAMESGA 135
Query: 714 KDSLVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
D + G P N LS QR+ + +A L+ P ++ +D TS LDA V
Sbjct: 136 HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195
Query: 765 MRAVKNVVE-TGRTVVCTIHQPSI 787
R + E RTV+ Q S+
Sbjct: 196 QRLLYESPEWASRTVLLITQQLSL 219
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 23/204 (11%)
Query: 595 NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQ 654
N +Q+L +T T PG +TAL+G +G+GK+T+ +L + P VQ
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQ 85
Query: 655 HTFARISGYCEQNDIHSPNITV-EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI 713
+ + + +H+ V +E ++F R + T+ + E+ G
Sbjct: 86 Y---------DHHYLHTQVAAVGQEPLLFGRSFRENIAY-GLTRTPTMEEITAVAMESGA 135
Query: 714 KDSLVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764
D + G P N L+ QR+ + +A L+ P ++ +D TS LDA V
Sbjct: 136 HDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195
Query: 765 MRAVKNVVE-TGRTVVCTIHQPSI 787
R + E RTV+ Q S+
Sbjct: 196 QRLLYESPEWASRTVLLITQQLSL 219
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 102/214 (47%), Gaps = 8/214 (3%)
Query: 596 QTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQH 655
QT + L I G AL+G +G+GK+T+ +L ++
Sbjct: 30 QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRN 89
Query: 656 TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD 715
+ I G Q+ I N T++ +I++ ++ TK+ + + ++ L D
Sbjct: 90 SIRSIIGIVPQDTILF-NETIKYNILYGKLDATDEEVIKATKSAQLYDFIEA--LPKKWD 146
Query: 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG 775
++VG G+ LS +R+R+ IA L+ +P I+ DE TS LD++ +AV+++ +
Sbjct: 147 TIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN- 204
Query: 776 RTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
RT++ H+ S + + ++L+ N G+I+ G
Sbjct: 205 RTLIIIAHRLS--TISSAESIILL-NKGKIVEKG 235
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 50 DTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 109
DT+VG+ + +SGG+++R+ ++ + + DE ++ LDS T + F K + +
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL---FQKAVEDL 201
Query: 110 TDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
LI ++ T + +IL+ +GKIV G
Sbjct: 202 RKNRTLI-IIAHRLSTISSAESIILLNKGKIVEKG 235
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 48/220 (21%), Positives = 89/220 (40%), Gaps = 25/220 (11%)
Query: 595 NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQ 654
N+ + +L +T T RPG +TAL+G +G+GK+T+ +L P+ +
Sbjct: 26 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYE 85
Query: 655 HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIK 714
H + + +++E+I + T+ + E+ G
Sbjct: 86 HRYLHRQVAAVGQEPQVFGRSLQENIAYGL-----------TQKPTMEEITAAAVKSGAH 134
Query: 715 DSLVGLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAT 763
+ GLP G TE QR+ + +A L+ P ++ +D+ TS LDA +
Sbjct: 135 SFISGLP--QGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQ 192
Query: 764 VMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803
V + + E V I Q + + E D ++ ++ G
Sbjct: 193 VEQLLYESPERYSRSVLLITQ-HLSLVEQADHILFLEGGA 231
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 29/200 (14%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTXXXXXXXXXXXXYPKVQHTF 657
Q+L DI+ +P + A G SG GK+T+ +L + T +++
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWR 75
Query: 658 ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVL-QTIEL------ 710
++I G+ Q+ T+ E++ + + ++ +E L Q ++L
Sbjct: 76 SQI-GFVSQDSAIMAG-TIRENLTYG------------LEGDYTDEDLWQVLDLAFARSF 121
Query: 711 -DGIKDSL---VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766
+ + D L VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + + V +
Sbjct: 122 VENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 767 AVKNVVETGRTVVCTIHQPS 786
A+ ++++ GRT + H+ S
Sbjct: 181 ALDSLMK-GRTTLVIAHRLS 199
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 94/215 (43%), Gaps = 16/215 (7%)
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTF 657
+++ + ++ + G AL+G SG GKTT + +L+G + +
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74
Query: 658 ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
+ G QN P++TV E+I F R +I + V E+ + + +D + D
Sbjct: 75 REV-GMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDR- 129
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNV-VETGR 776
LS Q++R+ +A LV P ++ DEP S LDA + +K++ E G
Sbjct: 130 ----KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGI 185
Query: 777 TVVCTIHQPSIDIFEAFD--DLVLMKNGGRIIYFG 809
T V H D EA + + N G+++ +G
Sbjct: 186 TSVYVTH----DQAEAMTMASRIAVFNQGKLVQYG 216
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGGQ++R+ +V + L DE + LD++ + + +KHL T+ + +
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITS-VYVTH 192
Query: 121 PAPETFDLFDDVILMAEGKIVYHG 144
E + + + +GK+V +G
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQYG 216
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 109/261 (41%), Gaps = 53/261 (20%)
Query: 556 GERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILT 615
G PL +K + FE + ++ D R + L D++ T PG
Sbjct: 43 GAGPLRFQKGRIEFENVHFSYADGR-------------------ETLQDVSFTVMPGQTL 83
Query: 616 ALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARISG----YCEQNDIHS 671
AL+G SGAGK+T++ +L + + RI G Q + S
Sbjct: 84 ALVGPSGAGKSTILRLL---------------FRFYDISSGCIRIDGQDISQVTQASLRS 128
Query: 672 P-NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP-------GV 723
+ +++++F+ + + + T +EV + GI D+++ P G
Sbjct: 129 HIGVVPQDTVLFNDTIADNIRYGRVTAGN--DEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186
Query: 724 NG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCT 781
G LS +++R+ IA ++ P II +DE TS LD + ++ V RT +
Sbjct: 187 RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVV 245
Query: 782 IHQPSIDIFEAFDDLVLMKNG 802
H+ S + D ++++K+G
Sbjct: 246 AHRLSTVV--NADQILVIKDG 264
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 82/184 (44%), Gaps = 14/184 (7%)
Query: 610 RPGILTALMGVSGAGKTTLMDVLSGR------KTXXXXXXXXXXXXYPKVQHTFARISGY 663
+ G + ++G +G GK+T + +L+G+ ++Q+ F ++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 664 CEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723
+ + + + V + L + D K E EV++ +EL+ + + +
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLE---EVVKALELENVLEREI----- 156
Query: 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH 783
LS + +R+ IA L+ N + F DEP+S LD R RA++ + E G++V+ H
Sbjct: 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
Query: 784 QPSI 787
++
Sbjct: 217 DLAV 220
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 28/196 (14%)
Query: 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARISGYCEQ 666
G + G + ++G +G GKTT + L+G + K Q+ A G
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKADYEG---- 362
Query: 667 NDIHSPNITVEESIVFSAWLRLSTQID-SKTKAEFVN-EVLQTIELDGIKDSLVGLPGVN 724
TV E L ++ID SK + F E+L+ + + + D VN
Sbjct: 363 --------TVYE---------LLSKIDASKLNSNFYKTELLKPLGIIDLYDRE-----VN 400
Query: 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQ 784
LS + +R+ IA L+ + I +DEP++ LD V RA++++ E +
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Query: 785 PSIDIFEAFDDLVLMK 800
+ I D L + +
Sbjct: 461 DVLXIDYVSDRLXVFE 476
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 22 MKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRA 81
+ I A L ++ +LK LG+ D V + +SGG+ +R+ ++
Sbjct: 368 LSKIDASKLNSNFYKTELLKPLGIIDLYDREVNE-----LSGGELQRVAIAATLLRDADI 422
Query: 82 LFMDEISNGLDSSTTFQIVSFLKHLVHITDATALI 116
+DE S LD + ++HL + TAL+
Sbjct: 423 YLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALV 457
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 695 KTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 754
K EFV ++ D KD + LS +++R+ IA +V P I+ +DEP
Sbjct: 120 KKAMEFVG-----LDFDSFKDRVPFF-----LSGGEKRRVAIASVIVHEPDILILDEPLV 169
Query: 755 GLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805
GLD ++R V+ G+TV+ H + D +V+++ G ++
Sbjct: 170 GLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKV 219
Score = 33.5 bits (75), Expect = 0.81, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGG+K+R+ +IV L +DE GLD ++ ++ + LIS
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS--H 198
Query: 121 PAPETFDLFDDVILMAEGKIVYHG 144
+ D V+++ +GK V+ G
Sbjct: 199 DIETVINHVDRVVVLEKGKKVFDG 222
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 695 KTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 754
K EFV ++ D KD + LS +++R+ IA +V P I+ +DEP
Sbjct: 118 KKAMEFVG-----LDFDSFKDRVPFF-----LSGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 755 GLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805
GLD ++R V+ G+TV+ H + D +V+++ G ++
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKV 217
Score = 33.5 bits (75), Expect = 0.81, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGG+K+R+ +IV L +DE GLD ++ ++ + LIS
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS--H 196
Query: 121 PAPETFDLFDDVILMAEGKIVYHG 144
+ D V+++ +GK V+ G
Sbjct: 197 DIETVINHVDRVVVLEKGKKVFDG 220
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 15/199 (7%)
Query: 610 RPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTF-----ARISGYC 664
+ G L+G SG GKTT + +++G + + R
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 665 EQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724
Q+ P++TV ++I F LR + E V + EL G+ + L P
Sbjct: 87 FQSYALYPHMTVYDNIAFPLKLR------KVPRQEIDQRVREVAELLGLTELLNRKP--R 138
Query: 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGRTVVCTIH 783
LS QR+R+ + +V P + MDEP S LDA+ + +K + + G T + H
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
Query: 784 QPSIDIFEAFDDLVLMKNG 802
++ D + +M G
Sbjct: 199 D-QVEAMTMGDRIAVMNRG 216
Score = 34.3 bits (77), Expect = 0.40, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 59 RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISL 118
R +SGGQ++R+ G IV + MDE + LD+ ++ + LK L T I +
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTT-IYV 196
Query: 119 LQPAPETFDLFDDVILMAEG 138
E + D + +M G
Sbjct: 197 THDQVEAMTMGDRIAVMNRG 216
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 11/205 (5%)
Query: 612 GILTALMGVSGAGKTTLMDVLSG------RKTXXXXXXXXXXXXYPKVQHTFARISGYCE 665
G + ALMG +GAGK+TL +L+G + P + +
Sbjct: 29 GEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAF-- 86
Query: 666 QNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725
Q + P +T+ + + +L ++ AEF +V + +EL +S + G
Sbjct: 87 QYPVEVPGVTIANFLRLALQAKLGREVGV---AEFWTKVKKALELLDWDESYLSRYLNEG 143
Query: 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQP 785
S ++KR I LV P+ +DE SGLD A V R V + + H
Sbjct: 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ 203
Query: 786 SIDIFEAFDDLVLMKNGGRIIYFGP 810
I + D + +M +G + GP
Sbjct: 204 RILNYIQPDKVHVMMDGRVVATGGP 228
Score = 30.4 bits (67), Expect = 6.6, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 57 MRRGVSGGQKKRLTTGELIV-GPTRALFMDEISNGLDSSTTFQIVSFLKHL-------VH 108
+ G SGG+KKR +L+V PT A+ +DE +GLD + + + +
Sbjct: 140 LNEGFSGGEKKRNEILQLLVLEPTYAV-LDETDSGLDIDALKVVARGVNAMRGPNFGALV 198
Query: 109 ITDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
IT +++ +QP D V +M +G++V G
Sbjct: 199 ITHYQRILNYIQP--------DKVHVMMDGRVVATG 226
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/192 (22%), Positives = 86/192 (44%), Gaps = 26/192 (13%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARIS 661
L ++G R G + L+G +GAGK+TL+ +G + +Q +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKG-----------SIQFAGQPLE 64
Query: 662 GYCEQN-DIHSPNITVEESIVFSA--WLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
+ +H ++ +++ F+ W L+ KT+ E +N+V + LD D L
Sbjct: 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---DKLG 121
Query: 719 GLPGVNGLSTEQRKRLTIAVELV-----ANPS--IIFMDEPTSGLDARAAATVMRAVKNV 771
N LS + +R+ +A ++ ANP+ ++ +DEP + LD + + + + +
Sbjct: 122 --RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL 179
Query: 772 VETGRTVVCTIH 783
+ G +V + H
Sbjct: 180 CQQGLAIVXSSH 191
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 27/203 (13%)
Query: 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYP-KVQHTFA 658
QL+ D G + G + ++G +G GKTT +L G T K Q F
Sbjct: 283 QLVVD-NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFP 341
Query: 659 RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
G +Q + N + ++++ S+W F EV + + L + +S
Sbjct: 342 NYDGTVQQ---YLENAS-KDALSTSSW--------------FFEEVTKRLNLHRLLES-- 381
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTV 778
VN LS + ++L IA L + +D+P+S LD V +A+K V + V
Sbjct: 382 ---NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAV 438
Query: 779 VCTI-HQPSIDIFEAFDDLVLMK 800
I H SI + A D +++ K
Sbjct: 439 TFIIDHDLSIHDYIA-DRIIVFK 460
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 16/181 (8%)
Query: 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARISGYCEQN 667
T + + ++G +G GKTT++ +L+G + +V F Y
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAG-EIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79
Query: 668 DIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL------- 720
+++S + + I + + SK VNE+L I+ G KD + L
Sbjct: 80 ELYSNELKIVHKIQYVEYA-------SKFLKGTVNEILTKIDERGKKDEVKELLNMTNLW 132
Query: 721 -PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVV 779
N LS +RL +A L+ + D+P+S LD R + +A++ +++ +V
Sbjct: 133 NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIV 192
Query: 780 C 780
Sbjct: 193 V 193
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 24/207 (11%)
Query: 610 RPGILTALMGVSGAGKTTLMDVLSG--RKTXXXXXXXXXXXXYPKVQHTFARISGYCEQN 667
R G + L+G SG+GKTT++ +++G R T Q R G QN
Sbjct: 39 REGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---RNVGLVFQN 95
Query: 668 DIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727
++TV +++ F LR + A V E+L+ + L+ + + LS
Sbjct: 96 YALFQHMTVYDNVSFG--LREKRVPKDEMDAR-VRELLRFMRLESYANRF-----PHELS 147
Query: 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAATVMRAVKNVVETGRTVVCTIHQ 784
Q++R+ +A L P ++ DEP + +D R T +R V + E G T V H
Sbjct: 148 GGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD--EMGVTSVFVTH- 204
Query: 785 PSIDIFEAFD--DLVLMKNGGRIIYFG 809
D EA + D VL+ + G + FG
Sbjct: 205 ---DQEEALEVADRVLVLHEGNVEQFG 228
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGGQ++R+ + + L DE +D+ ++ +F++ VH + +
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ-VHDEMGVTSVFVTH 204
Query: 121 PAPETFDLFDDVILMAEGKIVYHG 144
E ++ D V+++ EG + G
Sbjct: 205 DQEEALEVADRVLVLHEGNVEQFG 228
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 101/257 (39%), Gaps = 49/257 (19%)
Query: 569 FEPLTVTFEDLRYYVDI--------PSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGV 620
F P + F L VD+ P ++ G + ++ G R G + ++G
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVE-----PGEIRKGEVIGIVGP 390
Query: 621 SGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARISGYCEQNDIHSPNITVEESI 680
+G GKTT + +L+G + K Q+ A G TV E
Sbjct: 391 NGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEG------------TVYE-- 436
Query: 681 VFSAWLRLSTQIDS-KTKAEFVN-EVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAV 738
L ++IDS K + F E+L+ + + + D V LS + +R+ IA
Sbjct: 437 -------LLSKIDSSKLNSNFYKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAIAA 484
Query: 739 ELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVL 798
L+ + I +DEP++ LD V RA+++++E + + I D L
Sbjct: 485 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL-- 542
Query: 799 MKNGGRIIYFGPLGQHS 815
I++ G G+H
Sbjct: 543 ------IVFEGEPGRHG 553
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQP 785
LS + +R+ IA L+ F DEP+S LD R V R ++ + G+ V+ H
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 288
Query: 786 SI 787
++
Sbjct: 289 AV 290
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 22 MKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRA 81
+ I + L ++ +LK LG+ D V D +SGG+ +R+ ++
Sbjct: 438 LSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADI 492
Query: 82 LFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIV 141
+DE S LD + ++HL+ + TAL+ ++ D D +++ EG+
Sbjct: 493 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV--VEHDVLMIDYVSDRLIVFEGEPG 550
Query: 142 YHG 144
HG
Sbjct: 551 RHG 553
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 43/192 (22%), Positives = 86/192 (44%), Gaps = 26/192 (13%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARIS 661
L ++G R G + L+G +GAGK+TL+ +G + +Q +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKG-----------SIQFAGQPLE 64
Query: 662 GYCEQN-DIHSPNITVEESIVFSA--WLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
+ +H ++ +++ F+ W L+ KT+ E +N+V + LD D L
Sbjct: 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---DKLG 121
Query: 719 GLPGVNGLSTEQRKRLTIAVELV-----ANPS--IIFMDEPTSGLDARAAATVMRAVKNV 771
N LS + +R+ +A ++ ANP+ ++ +DEP + LD + + + + +
Sbjct: 122 --RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL 179
Query: 772 VETGRTVVCTIH 783
+ G +V + H
Sbjct: 180 SQQGLAIVXSSH 191
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 42/192 (21%), Positives = 87/192 (45%), Gaps = 26/192 (13%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARIS 661
L ++G R G + L+G +GAGK+TL+ ++G + +Q +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKG-----------SIQFAGQPLE 64
Query: 662 GYCEQN-DIHSPNITVEESIVFSA--WLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
+ +H ++ +++ F+ W L+ KT+ E +N+V + LD D L
Sbjct: 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---DKLG 121
Query: 719 GLPGVNGLSTEQRKRLTIAVELV-----ANPS--IIFMDEPTSGLDARAAATVMRAVKNV 771
N LS + +R+ +A ++ ANP+ ++ +D+P + LD + + + + +
Sbjct: 122 --RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSAL 179
Query: 772 VETGRTVVCTIH 783
+ G +V + H
Sbjct: 180 SQQGLAIVMSSH 191
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 21/205 (10%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTXXXXXXXXXXXXYPKVQHTFA 658
L + G + A++G +G GK+TL+D+L G R P+ F+
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQF---FS 76
Query: 659 RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
Y S++ + ST I++ K + + + LD + + +
Sbjct: 77 SPFAY---------------SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHL 121
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRT 777
LS QR+ + IA + + +I +DEPTS LD V+ + ++ ++ T
Sbjct: 122 AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMT 181
Query: 778 VVCTIHQPSIDIFEAFDDLVLMKNG 802
VV T HQP+ + A L+L K
Sbjct: 182 VVFTTHQPNQVVAIANKTLLLNKQN 206
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 37 DYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 96
DY + + LD T + +SGGQ++ + I + + +DE ++ LD +
Sbjct: 105 DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Query: 97 FQIVSFLKHLVHITDATALISLLQP 121
++S L L + T + + QP
Sbjct: 165 DIVLSLLIDLAQSQNMTVVFTTHQP 189
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 101/257 (39%), Gaps = 49/257 (19%)
Query: 569 FEPLTVTFEDLRYYVDI--------PSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGV 620
F P + F L VD+ P ++ G + ++ G R G + ++G
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVE-----PGEIRKGEVIGIVGP 376
Query: 621 SGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARISGYCEQNDIHSPNITVEESI 680
+G GKTT + +L+G + K Q+ A G TV E
Sbjct: 377 NGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEG------------TVYE-- 422
Query: 681 VFSAWLRLSTQIDS-KTKAEFVN-EVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAV 738
L ++IDS K + F E+L+ + + + D V LS + +R+ IA
Sbjct: 423 -------LLSKIDSSKLNSNFYKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAIAA 470
Query: 739 ELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVL 798
L+ + I +DEP++ LD V RA+++++E + + I D L
Sbjct: 471 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL-- 528
Query: 799 MKNGGRIIYFGPLGQHS 815
I++ G G+H
Sbjct: 529 ------IVFEGEPGRHG 539
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQP 785
LS + +R+ IA L+ F DEP+S LD R V R ++ + G+ V+ H
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 274
Query: 786 SI 787
++
Sbjct: 275 AV 276
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 22 MKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRA 81
+ I + L ++ +LK LG+ D V D +SGG+ +R+ ++
Sbjct: 424 LSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADI 478
Query: 82 LFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIV 141
+DE S LD + ++HL+ + TAL+ ++ D D +++ EG+
Sbjct: 479 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV--VEHDVLMIDYVSDRLIVFEGEPG 536
Query: 142 YHG 144
HG
Sbjct: 537 RHG 539
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 42/192 (21%), Positives = 86/192 (44%), Gaps = 26/192 (13%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARIS 661
L ++G R G + L+G +GAGK+TL+ ++G + +Q +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKG-----------SIQFAGQPLE 64
Query: 662 GYCEQN-DIHSPNITVEESIVFSA--WLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
+ +H ++ +++ F+ W L+ KT+ E +N+V + LD D L
Sbjct: 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---DKLG 121
Query: 719 GLPGVNGLSTEQRKRLTIAVELV-----ANPS--IIFMDEPTSGLDARAAATVMRAVKNV 771
N LS + +R+ +A ++ ANP+ ++ +D+P LD + + + + +
Sbjct: 122 --RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSAL 179
Query: 772 VETGRTVVCTIH 783
+ G +V + H
Sbjct: 180 SQQGLAIVMSSH 191
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 15/165 (9%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 660
+L I+ G L G++GAGKTTL+++L+ + KV ++ +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETV 95
Query: 661 S---GYCEQNDIHSPNITVEE-----SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG 712
G+ HS +E +V S + S + E NE Q ++L G
Sbjct: 96 RQHIGFVS----HSLLEKFQEGERVIDVVISGAFK-SIGVYQDIDDEIRNEAHQLLKLVG 150
Query: 713 IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
G LST +++R+ IA L P ++ +DEP +GLD
Sbjct: 151 XSAKAQQYIGY--LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 13/206 (6%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG-RKTXXXXXXXXXXXXYPKVQHTFAR 659
+L+DI+ + PG + ++G SG GKTTL+ L+G + + K + R
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 660 IS--GYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
GY Q + P++TV +I + + + E +EL GI +
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE------AMLELTGISELA 132
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR-AVKNVVETGR 776
P + LS Q++R +A L +P +I +DEP S LD + + + + G+
Sbjct: 133 GRYP--HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGK 190
Query: 777 TVVCTIHQPSIDIFEAFDDLVLMKNG 802
+ V H + + D + +MK G
Sbjct: 191 SAVFVSHDRE-EALQYADRIAVMKQG 215
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 22/159 (13%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 660
+L DI G L A+ G +GAGKT+L+ ++ G K++H+ RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----------LEPSEGKIKHS-GRI 101
Query: 661 SGYCEQNDIHSPNITVEESIVFSAW--LRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
S +C QN P T++E+I+ ++ R + I + E +++ + KD++V
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAE-------KDNIV 152
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
G LS QR R+++A + + + +D P LD
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 15/164 (9%)
Query: 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTXXXXXXXXXXXXYPKVQHTFA- 658
+ D++ + G L+G SG GKTT + ++G T P+ + F
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPE-KGVFVP 80
Query: 659 ---RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD 715
R Q+ P+ TV ++I F LR K E V + E G+ +
Sbjct: 81 PKERDVAXVFQSYALYPHXTVYDNIAFPLKLR------KVPKQEIDKRVREVAEXLGLTE 134
Query: 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 759
L P LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 135 LLNRKP--RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 22/159 (13%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 660
+L DI G L A+ G +GAGKT+L+ ++ G K++H+ RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----------LEPSEGKIKHS-GRI 101
Query: 661 SGYCEQNDIHSPNITVEESIVFSAW--LRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
S +C QN P T++E+I+ ++ R + I + E +++ + KD++V
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAE-------KDNIV 152
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
G LS QR R+++A + + + +D P LD
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQP 785
LS +R+R+ +A LV P ++ +DEP S +D + +M ++ V + +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
Query: 786 SIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813
I+ D++ +M N GRI+ G L +
Sbjct: 187 LIEAAMLADEVAVMLN-GRIVEKGKLKE 213
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120
+SGG+++R+ +V R L +DE + +D T ++ L+ + D ++ +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD-VPILHVTH 185
Query: 121 PAPETFDLFDDVILMAEGKIVYHGPL 146
E L D+V +M G+IV G L
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKGKL 211
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 28/221 (12%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR----------KTXXXXXXXXXXX 648
+ L ++ + G +T ++G +G+GK+TL++V++G +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 649 XYPKVQHTFARISGYCEQNDIHS-------PNITVEESIVFSAWLRLSTQIDSKTKAEFV 701
+ + TF E + + P + S+ + W+ ++ E
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKA 134
Query: 702 NEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 761
++L+ ++L + D G LS Q K + I L+ NP +I MDEP +G+ A
Sbjct: 135 FKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 189
Query: 762 ATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
+ V + G T + H+ I + D L +M NG
Sbjct: 190 HDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 46/208 (22%), Positives = 84/208 (40%), Gaps = 28/208 (13%)
Query: 612 GILTALMGVSGAGKTTLMDVLSGR----------KTXXXXXXXXXXXXYPKVQHTFARIS 661
G +T ++G +G+GK+TL++V++G + + + TF
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQ 92
Query: 662 GYCEQNDIHS-------PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIK 714
E + + P + S+ + W+ ++ E ++L+ ++L +
Sbjct: 93 PLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFLKLSHLY 147
Query: 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET 774
D G LS Q K + I L+ NP +I MDEP +G+ A + V +
Sbjct: 148 DRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 775 GRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
G T + H+ I + D L +M NG
Sbjct: 203 GITFLIIEHRLDI-VLNYIDHLYVMFNG 229
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 23/160 (14%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 660
+L DI G L A+ G +GAGKT+L+ ++ G K++H+ RI
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----------LEPSEGKIKHS-GRI 83
Query: 661 SGYCEQNDIHSPNITVEESIVFSA---WLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
S +C Q P T++E+I+F R + I + E +++ + KD++
Sbjct: 84 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAE-------KDNI 134
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
V G LS QR R+++A + + + +D P LD
Sbjct: 135 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 174
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 23/160 (14%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 660
+L DI G L A+ G +GAGKT+L+ ++ G K++H+ RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----------LEPSEGKIKHS-GRI 71
Query: 661 SGYCEQNDIHSPNITVEESIVFSA---WLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
S +C Q P T++E+I+F R + I + E +++ + KD++
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAE-------KDNI 122
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
V G LS QR R+++A + + + +D P LD
Sbjct: 123 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 162
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 46/221 (20%), Positives = 89/221 (40%), Gaps = 28/221 (12%)
Query: 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR----------KTXXXXXXXXXXX 648
+ L ++ + G +T ++G +G+GK+TL++V++G +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 649 XYPKVQHTFARISGYCEQNDIHS-------PNITVEESIVFSAWLRLSTQIDSKTKAEFV 701
+ + TF E + + P + S+ + W+ ++ E
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEM-----VEKA 134
Query: 702 NEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 761
++L+ ++L + D G LS Q K + I L+ NP +I MD+P +G+ A
Sbjct: 135 FKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLA 189
Query: 762 ATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802
+ V + G T + H+ I + D L +M NG
Sbjct: 190 HDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 22/159 (13%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 660
+L DI G L A+ G +GAGKT+L+ ++ G K++H+ RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----------LEPSEGKIKHS-GRI 71
Query: 661 SGYCEQNDIHSPNITVEESIVFSAW--LRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
S +C Q P T++E+I+ ++ R + I + E +++ + KD++V
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAE-------KDNIV 122
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
G LS QR R+++A + + + +D P LD
Sbjct: 123 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 161
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQP 785
LS +++R+ +A LV NP I+ +DEP S LD R E R ++ +H+
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQ-----------ENAREMLSVLHKK 176
Query: 786 S 786
+
Sbjct: 177 N 177
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 45 LDICADTMVGDPMRRG---VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVS 101
LD D + + R +SGG+++R+ +V + L +DE + LD T
Sbjct: 109 LDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE 168
Query: 102 FLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144
L ++H + ++ + E + D + ++ +GK++ G
Sbjct: 169 MLS-VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVG 210
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 726 LSTEQRKRLTIAVELVAN--PSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH 783
LS + +RL +A +L +N + +DEP++GL ++ A++N+ G ++ H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 784 QPSIDIFEAFDDLVLM-----KNGGRIIYFGP 810
+D+ D LV + + GG I+Y GP
Sbjct: 440 --DLDVIRRADWLVDVGPEAGEKGGEILYSGP 469
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 704 VLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARA 760
L T+ G+ +G P LS + +R+ +A EL + ++ +DEPT+GL
Sbjct: 710 ALDTLREVGLGYLRLGQPATE-LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPAD 768
Query: 761 AATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVL------MKNGGRIIYFG 809
+ R + +V+ G TV+ H+ + A D VL ++GGR++ G
Sbjct: 769 VERLQRQLVKLVDAGNTVIAVEHKMQV---VAASDWVLDIGPGAGEDGGRLVAQG 820
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 36.6 bits (83), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 75/198 (37%), Gaps = 31/198 (15%)
Query: 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARISGYCEQN 667
T RPG + L+G +G GK+T + +L+G++ P+ Q G QN
Sbjct: 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDP----PEWQEIIKYFRGSELQN 154
Query: 668 --------DIHS----------PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE 709
DI + P L+L + E V ++ ++
Sbjct: 155 YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME----KSPEDVKRYIKILQ 210
Query: 710 LDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
L+ + + LS + +R I + V + DEP+S LD + + ++
Sbjct: 211 LENVLKR-----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIR 265
Query: 770 NVVETGRTVVCTIHQPSI 787
+++ + V+C H S+
Sbjct: 266 SLLAPTKYVICVEHDLSV 283
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 4 IKLEKLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSG 63
+K +K+A FP + K I + L QTD ++K L +D D V + +SG
Sbjct: 417 MKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTD-VVKPLRIDDIIDQEV-----QHLSG 470
Query: 64 GQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALI 116
G+ +R+ + P +DE S LDS ++ + TA I
Sbjct: 471 GELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHL 106
+SGGQK+R+ + + L DE ++ LD +TT I+ LK +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI 186
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 701 VNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPS---IIFMDEPTSGLD 757
+ LQ + G+ +G P LS + +R+ +A EL + + +DEPT GL
Sbjct: 782 IKRTLQVLHDVGLGYVKLGQPATT-LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLH 840
Query: 758 ARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812
++ + +V+ G TV+ H +L ++KN II GP G
Sbjct: 841 FEDVRKLVEVLHRLVDRGNTVIVIEH-----------NLDVIKNADHIIDLGPEG 884
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 18/131 (13%)
Query: 668 DIHS-PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE--LDGIKDSLVGLP--- 721
+IH +++ E + F L L+ + + E V E+L+ IE L+ + D VGL
Sbjct: 405 NIHEFTELSISEELEFLKNLNLTER-----EREIVGELLKEIEKRLEFLVD--VGLEYLT 457
Query: 722 ---GVNGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAATVMRAVKNVVETGR 776
LS + +R+ +A ++ + + I +DEPT GL R +++ +K + + G
Sbjct: 458 LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGN 517
Query: 777 TVVCTIHQPSI 787
TV+ H +
Sbjct: 518 TVIVVEHDEEV 528
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV---KNVVET 774
+G GVN LS Q++R+++A + +N I D+P S +DA + V K +++
Sbjct: 121 IGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKN 179
Query: 775 GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
+T + H S + D++++ +GG+I G
Sbjct: 180 -KTRILVTHSMS---YLPQVDVIIVMSGGKISEMG 210
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 23/160 (14%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 660
+L DI G L A+ G +GAGKT+L+ ++ G K++H+ RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----------LEPSEGKIKHS-GRI 101
Query: 661 SGYCEQNDIHSPNITVEESIVFSA---WLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
S +C Q P T++E+I+ R + I + E +++ + KD++
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAE-------KDNI 152
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
V G LS QR R+++A + + + +D P LD
Sbjct: 153 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 703 EVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 762
E+ + + G+ +V + GLS Q+ +L +A P +I +DEPT+ LD +
Sbjct: 879 EIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLG 938
Query: 763 TVMRAVK 769
+ +A+K
Sbjct: 939 ALSKALK 945
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 712 GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
G D ++ +P ++ LS + +L +A ++ N I+ +DEPT+ LD
Sbjct: 536 GFTDEMIAMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 55 DPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHL 106
D +SGGQK+R+ + + L D+ ++ LD +TT I+ LK +
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI 209
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 23/160 (14%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 660
+L DI G L A+ G +GAGKT+L+ ++ G K++H+ RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----------LEPSEGKIKHS-GRI 101
Query: 661 SGYCEQNDIHSPNITVEESIVFSA---WLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717
S +C Q P T++E+I+F R + I + E +++ + KD++
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAE-------KDNI 152
Query: 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
V G LS Q+ ++++A + + + +D P LD
Sbjct: 153 VLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLD 192
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 35.0 bits (79), Expect = 0.26, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 59 RGVSGGQKK------RLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDA 112
RG+SGG++ ++ E+ G A F+DE + LD+ +I S LK L +
Sbjct: 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 113 TALISLLQPAPETFD 127
I+ + E FD
Sbjct: 338 IVFITHDREFSEAFD 352
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 712 GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
G+ +V + GLS Q+ +L +A P +I +DEPT+ LD + + +A+K
Sbjct: 888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 945
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 712 GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
G D + P ++ LS + +L +A ++ N I+ +DEPT+ LD
Sbjct: 536 GFTDEXIAXP-ISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 726 LSTEQRKRLTIAVEL--VANPSIIF-MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTI 782
LS + +R+ +A EL +N ++ +DEPT+GL A ++ + +V+ G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 783 HQPSIDIFEAFDDLVLM-----KNGGRIIYFG 809
H ++D+ + D ++ + GG+I+ G
Sbjct: 906 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 34.7 bits (78), Expect = 0.32, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 59 RGVSGGQKKRLTT------GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDA 112
RG+SGG++ ++ E+ G A F+DE + LD+ +I S LK L +
Sbjct: 278 RGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 113 TALISLLQPAPETFD 127
I+ + E FD
Sbjct: 338 IVFITHDREFSEAFD 352
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766
LS ++R+ IA+ L+ +P ++ +DEPTS LD A +++
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 726 LSTEQRKRLTIAVEL--VANPSIIF-MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTI 782
LS + +R+ +A EL +N ++ +DEPT+GL A ++ + +V+ G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 783 HQPSIDIFEAFDDLVLM-----KNGGRIIYFG 809
H ++D+ + D ++ + GG+I+ G
Sbjct: 906 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 712 GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769
G+ +V + GLS Q+ +L +A P +I +DEPT+ LD + + +A+K
Sbjct: 882 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 939
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 712 GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
G D + P ++ LS + +L +A ++ N I+ +DEPT+ LD
Sbjct: 530 GFTDEXIAXP-ISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 60 GVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHL 106
+SGGQK+R+ + + L D+ ++ LD +TT I+ LK +
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI 209
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT-VVCTIH 783
G S ++KR I V P + +DE SGLD A V V ++ + R+ ++ T +
Sbjct: 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 204
Query: 784 QPSIDIFEAFDDLVLMKNGGRIIYFG 809
Q +D + D V + GRI+ G
Sbjct: 205 QRILDYIKP--DYVHVLYQGRIVKSG 228
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 636
+L ++ PG + A+MG +G+GK+TL L+GR+
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE 51
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 726 LSTEQRKRLTIAVEL--VANPSIIF-MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTI 782
LS + +R+ +A EL +N ++ +DEPT+GL A ++ + +V+ G TV+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 783 HQPSIDIFEAFDDLVLM-----KNGGRIIYFG 809
H ++D+ + D ++ + GG+I+ G
Sbjct: 604 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 633
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT-VVCTIH 783
G S ++KR I V P + +DE SGLD A V V ++ + R+ ++ T +
Sbjct: 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 223
Query: 784 QPSIDIFEAFDDLVLMKNGGRIIYFG 809
Q +D + D V + GRI+ G
Sbjct: 224 QRILDYIKP--DYVHVLYQGRIVKSG 247
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 636
+L ++ PG + A+MG +G+GK+TL L+GR+
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 33.5 bits (75), Expect = 0.73, Method: Composition-based stats.
Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 17/182 (9%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 660
+L IT T G + G +G GKTTL+ +S Y V T +
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTIS-----TYLKPLKGEIIYNGVPITKVKG 78
Query: 661 SGYCEQNDIHSP-NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG 719
+ +I P I+VE+ + A L K + + L+++E+ +K L
Sbjct: 79 KIFFLPEEIIVPRKISVEDYLKAVASL-----YGVKVNKNEIMDALESVEVLDLKKKL-- 131
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVV 779
LS +R+ +A L+ N I +D+P +D + V++++ +++ V+
Sbjct: 132 ----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187
Query: 780 CT 781
+
Sbjct: 188 IS 189
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 22/159 (13%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 660
+L DI G L A+ G +GAGKT+L+ ++ G K++H+ RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----------LEPSEGKIKHS-GRI 101
Query: 661 SGYCEQNDIHSPNITVEESIVFSAW--LRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLV 718
S +C Q P T++E+I+ ++ R + I + E +++ + KD++V
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAE-------KDNIV 152
Query: 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
G LS Q+ ++++A + + + +D P LD
Sbjct: 153 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLD 191
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 19/158 (12%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 660
+L +I G + A+ G +G+GKT+L+ ++ G ++H+ R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI----------IKHS-GRV 101
Query: 661 SGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKA-EFVNEVLQTIELDGIKDSLVG 719
S +C Q P T++E+I+F + S KA + ++ + E D ++++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSYD-EYRYKSVVKACQLQQDITKFAEQD---NTVLG 155
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
GV LS QR R+++A + + + +D P LD
Sbjct: 156 EGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 19/158 (12%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 660
+L +I G + A+ G +G+GKT+L+ ++ G ++H+ R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI----------IKHS-GRV 101
Query: 661 SGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKA-EFVNEVLQTIELDGIKDSLVG 719
S +C Q P T++E+I+F + S KA + ++ + E D ++++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSYD-EYRYKSVVKACQLQQDITKFAEQD---NTVLG 155
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
GV LS QR R+++A + + + +D P LD
Sbjct: 156 EGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 726 LSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVV 779
LS +++R+ +A L P +F+DEPTS LD +R ++ + V
Sbjct: 142 LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAV 201
Query: 780 CTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809
C + +++ + D +++ G+++ G
Sbjct: 202 CCVLH-DLNLAALYADRIMLLAQGKLVACG 230
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 726 LSTEQRKRLTIAVELVAN--PSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH 783
LS + +R+ +A ++ + + +DEP+ GL R ++ + + + G T++ H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 784 QPSIDIFEAFDDLVLM-----KNGGRIIYFGP 810
D E D +V + ++GGRI++ GP
Sbjct: 582 DE--DTIEHADWIVDIGPGAGEHGGRIVHSGP 611
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 726 LSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTI 782
LS + +R+ +A EL + + +DEPT+GL ++ + +V+ G TV+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 783 HQPSIDIFEAFD 794
H ++D+ + D
Sbjct: 924 H--NLDVIKTSD 933
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLM-DVLS 633
R L I +F G+LT++ GVSG+GK+TL+ D+L+
Sbjct: 654 REHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILA 690
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 20/158 (12%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 660
+L +I G + A+ G +G+GKT+L+ ++ G ++H+ R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI----------IKHS-GRV 101
Query: 661 SGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKA-EFVNEVLQTIELDGIKDSLVG 719
S +C Q P T++E+I+ ++ + S KA + ++ + E D ++++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSYDEY--RYKSVVKACQLQQDITKFAEQD---NTVLG 154
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
GV LS QR R+++A + + + +D P LD
Sbjct: 155 EGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 13/64 (20%)
Query: 579 LRYYVDIPSAMRKNGFN-------QTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDV 631
L+ I A++KN F T LQL G RP +L ++GV+G GKTT +
Sbjct: 82 LKSGPQIKEALKKNIFKLLTERVTTTELQL-----GNSRPAVLM-IVGVNGGGKTTTLGK 135
Query: 632 LSGR 635
L+ R
Sbjct: 136 LANR 139
>pdb|3SOJ|A Chain A, Francisella Tularensis Pilin Pile
pdb|3SOJ|B Chain B, Francisella Tularensis Pilin Pile
Length = 115
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 75 IVGPTRALFMDEISNGLD-SSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVI 133
I+G +A ++I+N LD S T+ + + + AT I+L Q +P+ F +D+I
Sbjct: 16 IIGNVKASIQNDINNNLDISQQTYDTPTGVTVTGSTSGATIDINLSQTSPQHFTNDNDII 75
Query: 134 LMAEGKIVYHGPLSYSC 150
++ G +V ++C
Sbjct: 76 RLS-GVVVSGSTFQWTC 91
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 19/158 (12%)
Query: 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 660
+L +I G + A+ G +G+GKT+L+ ++ G ++H+ R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI----------IKHS-GRV 101
Query: 661 SGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKA-EFVNEVLQTIELDGIKDSLVG 719
S +C Q P T++E+I+ S + S KA + ++ + E D ++++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENII-SGVSYDEYRYKSVVKACQLQQDITKFAEQD---NTVLG 155
Query: 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757
GV LS QR R+++A + + + +D P LD
Sbjct: 156 EGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 595 NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 636
N L++LS IT +P ++ A++G+ GK+ LM+ L+G+K
Sbjct: 35 NPEALKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 73
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 595 NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 636
N L++LS IT +P ++ A++G+ GK+ LM+ L+G+K
Sbjct: 24 NPEALKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,159,250
Number of Sequences: 62578
Number of extensions: 1358218
Number of successful extensions: 4047
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 3762
Number of HSP's gapped (non-prelim): 269
length of query: 1174
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1064
effective length of database: 8,089,757
effective search space: 8607501448
effective search space used: 8607501448
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)