Query 001048
Match_columns 1174
No_of_seqs 660 out of 4393
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 14:22:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0065 Pleiotropic drug resis 100.0 3E-191 7E-196 1726.5 81.9 1118 35-1174 235-1387(1391)
2 PLN03140 ABC transporter G fam 100.0 3E-186 7E-191 1811.4 122.8 1167 8-1174 284-1470(1470)
3 TIGR00956 3a01205 Pleiotropic 100.0 4E-167 8E-172 1642.4 119.1 1110 36-1173 185-1393(1394)
4 PLN03211 ABC transporter G-25; 100.0 4.9E-97 1E-101 910.7 64.9 584 570-1171 36-659 (659)
5 KOG0061 Transporter, ABC super 100.0 3E-97 6E-102 902.6 58.5 580 570-1174 22-612 (613)
6 TIGR00955 3a01204 The Eye Pigm 100.0 3.9E-96 8E-101 905.7 62.4 566 598-1174 37-617 (617)
7 TIGR00956 3a01205 Pleiotropic 100.0 1.1E-93 2.5E-98 944.5 63.8 591 570-1171 26-695 (1394)
8 PLN03140 ABC transporter G fam 100.0 1.8E-92 3.8E-97 927.4 62.0 593 569-1170 127-789 (1470)
9 KOG0065 Pleiotropic drug resis 100.0 2.3E-86 5.1E-91 808.5 42.7 565 598-1172 127-732 (1391)
10 KOG0061 Transporter, ABC super 100.0 2.5E-72 5.3E-77 684.1 42.5 491 4-510 100-608 (613)
11 KOG0055 Multidrug/pheromone ex 100.0 1.2E-71 2.7E-76 682.3 32.6 706 3-813 422-1210(1228)
12 TIGR00955 3a01204 The Eye Pigm 100.0 2.6E-67 5.6E-72 649.3 49.2 493 5-509 96-612 (617)
13 PLN03211 ABC transporter G-25; 100.0 6.4E-67 1.4E-71 643.8 50.0 488 8-509 140-657 (659)
14 TIGR01257 rim_protein retinal- 100.0 4.5E-59 9.8E-64 610.9 49.4 217 573-812 1937-2155(2272)
15 PTZ00265 multidrug resistance 100.0 1.1E-57 2.3E-62 603.0 38.9 219 572-813 1164-1449(1466)
16 PLN03130 ABC transporter C fam 100.0 2.8E-54 6.2E-59 575.8 44.1 214 572-814 1236-1459(1622)
17 PLN03232 ABC transporter C fam 100.0 2.9E-54 6.2E-59 576.6 42.8 213 572-813 1233-1455(1495)
18 COG1123 ATPase components of v 100.0 5E-54 1.1E-58 495.4 34.9 227 573-812 280-515 (539)
19 TIGR00957 MRP_assoc_pro multi 100.0 4.9E-51 1.1E-55 546.4 45.8 213 572-813 1283-1505(1522)
20 PTZ00243 ABC transporter; Prov 100.0 8.8E-51 1.9E-55 541.9 43.8 213 572-813 1307-1530(1560)
21 PRK10261 glutathione transport 100.0 4.1E-50 8.9E-55 496.8 39.6 228 573-813 313-550 (623)
22 TIGR03269 met_CoM_red_A2 methy 100.0 1.8E-50 3.9E-55 493.3 35.1 218 574-812 280-513 (520)
23 PRK13549 xylose transporter AT 100.0 7.3E-50 1.6E-54 485.9 36.9 223 574-814 260-492 (506)
24 PRK15134 microcin C ABC transp 100.0 5E-50 1.1E-54 489.9 35.1 203 599-812 299-511 (529)
25 PRK09700 D-allose transporter 100.0 8.5E-50 1.8E-54 486.2 35.6 215 573-811 265-493 (510)
26 PRK10762 D-ribose transporter 100.0 1.6E-49 3.5E-54 482.3 37.5 205 600-813 266-481 (501)
27 COG4172 ABC-type uncharacteriz 100.0 3.1E-49 6.7E-54 426.0 34.1 229 572-812 275-512 (534)
28 PRK15439 autoinducer 2 ABC tra 100.0 2.4E-49 5.1E-54 480.9 37.2 204 601-813 278-489 (510)
29 PRK11288 araG L-arabinose tran 100.0 4E-49 8.6E-54 478.8 36.0 206 600-814 267-483 (501)
30 TIGR02633 xylG D-xylose ABC tr 100.0 1.3E-48 2.7E-53 475.2 38.1 206 599-812 273-488 (500)
31 COG1126 GlnQ ABC-type polar am 100.0 5.5E-49 1.2E-53 395.2 21.5 215 574-812 3-221 (240)
32 TIGR01271 CFTR_protein cystic 100.0 8.6E-47 1.9E-51 503.8 49.3 212 572-813 1216-1437(1490)
33 PRK10982 galactose/methyl gala 100.0 1.3E-47 2.9E-52 464.8 36.7 216 573-812 250-476 (491)
34 PRK10938 putative molybdenum t 100.0 1.6E-47 3.4E-52 464.4 32.2 216 573-810 260-486 (490)
35 KOG0054 Multidrug resistance-a 100.0 5.3E-45 1.1E-49 459.5 43.5 214 571-813 1136-1359(1381)
36 COG1135 AbcC ABC-type metal io 100.0 7.3E-46 1.6E-50 391.6 20.3 220 574-813 2-228 (339)
37 PRK15064 ABC transporter ATP-b 100.0 1.6E-44 3.6E-49 441.5 33.8 198 573-811 319-520 (530)
38 COG1127 Ttg2A ABC-type transpo 100.0 3E-45 6.4E-50 374.1 20.1 230 572-825 7-248 (263)
39 COG1125 OpuBA ABC-type proline 100.0 1.7E-45 3.7E-50 376.5 18.0 215 574-813 2-222 (309)
40 PRK11819 putative ABC transpor 100.0 1.7E-43 3.6E-48 433.7 39.1 201 573-810 324-527 (556)
41 COG1116 TauB ABC-type nitrate/ 100.0 5.5E-45 1.2E-49 379.4 21.9 203 573-801 3-206 (248)
42 PRK13409 putative ATPase RIL; 100.0 6.3E-44 1.4E-48 434.7 33.3 211 573-825 340-554 (590)
43 KOG0058 Peptide exporter, ABC 100.0 2.9E-44 6.3E-49 418.9 26.5 249 514-813 431-688 (716)
44 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.9E-43 1.3E-47 429.0 39.1 201 573-810 322-525 (552)
45 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.5E-44 7.6E-49 379.6 23.8 219 573-814 4-225 (254)
46 COG1136 SalX ABC-type antimicr 100.0 5.5E-44 1.2E-48 373.0 24.0 193 599-804 18-219 (226)
47 COG1120 FepC ABC-type cobalami 100.0 2.9E-44 6.3E-49 382.6 19.8 220 573-814 2-226 (258)
48 PRK10636 putative ABC transpor 100.0 3.9E-43 8.5E-48 434.6 32.6 198 573-812 312-513 (638)
49 COG2884 FtsE Predicted ATPase 100.0 1.2E-43 2.6E-48 348.0 20.8 213 574-810 2-220 (223)
50 COG3638 ABC-type phosphate/pho 100.0 4.8E-44 1E-48 364.3 18.0 222 573-815 3-236 (258)
51 PRK11147 ABC transporter ATPas 100.0 1.9E-42 4.2E-47 429.9 35.3 201 573-810 319-522 (635)
52 COG1117 PstB ABC-type phosphat 100.0 1.3E-43 2.9E-48 354.1 19.7 219 572-812 6-233 (253)
53 TIGR01257 rim_protein retinal- 100.0 6.1E-39 1.3E-43 422.0 69.5 461 313-813 672-1146(2272)
54 COG3839 MalK ABC-type sugar tr 100.0 1.4E-43 3.1E-48 391.8 21.3 217 573-814 3-221 (338)
55 COG1131 CcmA ABC-type multidru 100.0 2.4E-43 5.1E-48 394.4 23.3 215 573-812 4-222 (293)
56 COG1118 CysA ABC-type sulfate/ 100.0 1E-43 2.2E-48 374.0 18.4 208 597-814 13-225 (345)
57 PLN03073 ABC transporter F fam 100.0 5.9E-42 1.3E-46 424.2 36.4 200 573-811 508-709 (718)
58 COG3842 PotA ABC-type spermidi 100.0 2.2E-43 4.9E-48 392.3 19.6 218 573-814 5-224 (352)
59 COG4555 NatA ABC-type Na+ tran 100.0 1.2E-43 2.7E-48 350.5 14.4 203 599-813 15-219 (245)
60 KOG0055 Multidrug/pheromone ex 100.0 1.5E-42 3.2E-47 426.7 20.4 220 570-814 347-574 (1228)
61 COG2274 SunT ABC-type bacterio 100.0 1.6E-41 3.4E-46 414.4 26.6 277 487-813 408-693 (709)
62 COG3840 ThiQ ABC-type thiamine 100.0 5.7E-42 1.2E-46 332.9 17.4 197 604-812 17-215 (231)
63 PRK13537 nodulation ABC transp 100.0 4.4E-41 9.6E-46 380.2 25.1 217 572-813 6-224 (306)
64 COG1124 DppF ABC-type dipeptid 100.0 2.6E-41 5.6E-46 347.7 20.7 218 573-813 3-228 (252)
65 TIGR02314 ABC_MetN D-methionin 100.0 5.8E-41 1.3E-45 381.6 24.9 219 574-813 2-227 (343)
66 PRK11650 ugpC glycerol-3-phosp 100.0 8.5E-41 1.8E-45 383.7 24.2 217 573-813 3-221 (356)
67 TIGR03265 PhnT2 putative 2-ami 100.0 1.4E-40 3E-45 381.5 24.5 216 573-813 4-221 (353)
68 PRK11432 fbpC ferric transport 100.0 1.7E-40 3.6E-45 380.1 24.5 216 573-813 6-223 (351)
69 cd03261 ABC_Org_Solvent_Resist 100.0 2.3E-40 5E-45 362.7 23.9 214 575-812 2-222 (235)
70 TIGR03258 PhnT 2-aminoethylpho 100.0 2.6E-40 5.6E-45 379.5 24.5 216 573-813 5-225 (362)
71 COG1122 CbiO ABC-type cobalt t 100.0 1.4E-40 3.1E-45 355.6 20.2 216 573-812 3-224 (235)
72 PRK13536 nodulation factor exp 100.0 5.7E-40 1.2E-44 374.5 25.5 217 572-813 40-258 (340)
73 PRK09452 potA putrescine/sperm 100.0 7.4E-40 1.6E-44 377.0 25.1 216 573-813 14-231 (375)
74 COG1137 YhbG ABC-type (unclass 100.0 2.8E-41 6.1E-46 333.5 11.2 208 596-813 14-225 (243)
75 PRK10851 sulfate/thiosulfate t 100.0 7.2E-40 1.6E-44 375.6 24.4 219 573-813 2-223 (353)
76 cd03259 ABC_Carb_Solutes_like 100.0 1.2E-39 2.6E-44 351.6 23.9 199 599-809 13-213 (213)
77 PRK11607 potG putrescine trans 100.0 1.7E-39 3.8E-44 374.7 26.1 216 573-813 19-236 (377)
78 TIGR00960 3a0501s02 Type II (G 100.0 9.5E-40 2.1E-44 353.2 22.4 209 574-805 2-216 (216)
79 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.1E-39 4.6E-44 351.4 25.0 201 599-812 17-219 (220)
80 TIGR01186 proV glycine betaine 100.0 9.3E-40 2E-44 373.4 23.0 204 598-813 5-216 (363)
81 TIGR01188 drrA daunorubicin re 100.0 7.8E-40 1.7E-44 370.7 22.0 203 598-812 5-209 (302)
82 TIGR01288 nodI ATP-binding ABC 100.0 2.1E-39 4.6E-44 367.4 24.7 215 573-812 4-220 (303)
83 cd03265 ABC_DrrA DrrA is the A 100.0 2.2E-39 4.8E-44 351.2 23.8 213 575-812 2-217 (220)
84 PRK11000 maltose/maltodextrin 100.0 2E-39 4.3E-44 375.1 24.8 216 573-813 3-220 (369)
85 COG0411 LivG ABC-type branched 100.0 4.3E-40 9.3E-45 339.2 17.0 209 597-814 15-237 (250)
86 PRK11153 metN DL-methionine tr 100.0 2.3E-39 5E-44 371.8 24.0 219 574-813 2-227 (343)
87 COG4525 TauB ABC-type taurine 100.0 2.5E-39 5.4E-44 317.5 20.3 201 599-812 18-220 (259)
88 cd03301 ABC_MalK_N The N-termi 100.0 4.3E-39 9.3E-44 347.4 24.3 210 575-809 2-213 (213)
89 cd03296 ABC_CysA_sulfate_impor 100.0 4.4E-39 9.4E-44 353.4 24.5 218 573-812 2-222 (239)
90 cd03219 ABC_Mj1267_LivG_branch 100.0 3.7E-39 8.1E-44 353.7 23.9 205 599-812 13-228 (236)
91 cd03269 ABC_putative_ATPase Th 100.0 3.4E-39 7.3E-44 347.3 23.1 209 575-809 2-210 (210)
92 cd03218 ABC_YhbG The ABC trans 100.0 4.5E-39 9.7E-44 352.1 23.5 213 575-812 2-218 (232)
93 PRK09536 btuD corrinoid ABC tr 100.0 3.1E-39 6.8E-44 373.5 23.0 219 573-813 3-225 (402)
94 cd03266 ABC_NatA_sodium_export 100.0 6.2E-39 1.3E-43 347.5 23.2 215 574-809 2-218 (218)
95 COG0410 LivF ABC-type branched 100.0 3.2E-39 6.8E-44 330.2 18.8 215 574-814 4-224 (237)
96 TIGR03522 GldA_ABC_ATP gliding 100.0 7.4E-39 1.6E-43 362.3 23.9 214 574-813 3-218 (301)
97 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 6.8E-39 1.5E-43 347.2 22.6 194 599-805 17-218 (218)
98 PRK11629 lolD lipoprotein tran 100.0 1.7E-38 3.7E-43 347.3 25.9 217 573-811 5-229 (233)
99 KOG0057 Mitochondrial Fe/S clu 100.0 8E-40 1.7E-44 368.4 15.7 214 570-813 348-571 (591)
100 cd03263 ABC_subfamily_A The AB 100.0 7.2E-39 1.6E-43 347.5 22.7 201 599-812 15-217 (220)
101 cd03260 ABC_PstB_phosphate_tra 100.0 7.1E-39 1.5E-43 349.2 22.6 214 575-812 2-225 (227)
102 cd03258 ABC_MetN_methionine_tr 100.0 7.5E-39 1.6E-43 350.4 22.7 218 574-812 2-226 (233)
103 PRK13637 cbiO cobalt transport 100.0 9.3E-39 2E-43 359.0 23.9 219 574-812 3-230 (287)
104 COG1129 MglA ABC-type sugar tr 100.0 1.3E-37 2.8E-42 357.5 33.6 204 601-813 274-487 (500)
105 COG4181 Predicted ABC-type tra 100.0 3E-39 6.6E-44 310.3 16.8 212 574-807 7-226 (228)
106 cd03256 ABC_PhnC_transporter A 100.0 6.9E-39 1.5E-43 352.9 21.9 206 599-813 14-231 (241)
107 cd03268 ABC_BcrA_bacitracin_re 100.0 8.5E-39 1.8E-43 343.6 22.0 206 575-809 2-208 (208)
108 cd03294 ABC_Pro_Gly_Bertaine T 100.0 7E-39 1.5E-43 357.1 21.8 204 597-812 35-246 (269)
109 cd03234 ABCG_White The White s 100.0 2.5E-38 5.4E-43 344.3 25.5 221 574-809 4-226 (226)
110 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1E-37 2.3E-42 393.5 35.1 210 573-813 451-670 (686)
111 PRK15079 oligopeptide ABC tran 100.0 1.9E-38 4.2E-43 361.0 25.4 232 572-813 7-248 (331)
112 PRK11248 tauB taurine transpor 100.0 2.8E-38 6.1E-43 349.1 25.7 212 574-811 2-215 (255)
113 PRK09493 glnQ glutamine ABC tr 100.0 1.9E-38 4.2E-43 348.7 23.9 215 574-812 2-221 (240)
114 cd03226 ABC_cobalt_CbiO_domain 100.0 9.7E-39 2.1E-43 342.2 20.7 192 599-806 13-205 (205)
115 PRK13651 cobalt transporter AT 100.0 1.6E-38 3.4E-43 358.5 23.3 220 574-813 3-251 (305)
116 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.7E-38 3.7E-43 349.4 23.0 202 599-812 14-221 (242)
117 PRK11264 putative amino-acid A 100.0 2.6E-38 5.6E-43 350.1 24.2 215 574-812 4-229 (250)
118 TIGR02315 ABC_phnC phosphonate 100.0 1.1E-38 2.4E-43 351.5 21.1 219 574-813 2-232 (243)
119 cd03224 ABC_TM1139_LivF_branch 100.0 1.3E-38 2.8E-43 346.1 21.3 200 599-812 13-217 (222)
120 COG4152 ABC-type uncharacteriz 100.0 7.3E-39 1.6E-43 325.6 17.8 214 574-813 3-216 (300)
121 TIGR02673 FtsE cell division A 100.0 2.5E-38 5.4E-43 341.7 23.2 207 574-804 2-214 (214)
122 COG4175 ProV ABC-type proline/ 100.0 3.3E-39 7.1E-44 339.7 15.7 203 600-814 42-252 (386)
123 PRK13634 cbiO cobalt transport 100.0 1.7E-38 3.6E-43 357.4 22.6 219 574-812 3-231 (290)
124 PRK13647 cbiO cobalt transport 100.0 2.7E-38 5.8E-43 353.1 24.1 216 573-812 4-223 (274)
125 COG4559 ABC-type hemin transpo 100.0 1.1E-38 2.3E-43 318.1 18.5 218 574-814 2-228 (259)
126 cd03292 ABC_FtsE_transporter F 100.0 2.4E-38 5.2E-43 342.0 22.9 195 599-805 14-214 (214)
127 PRK13631 cbiO cobalt transport 100.0 3E-38 6.5E-43 358.2 24.5 219 573-812 21-261 (320)
128 PRK11831 putative ABC transpor 100.0 3.3E-38 7.2E-43 351.9 24.5 216 573-812 7-229 (269)
129 PRK13643 cbiO cobalt transport 100.0 2.6E-38 5.6E-43 355.6 23.7 220 574-813 2-230 (288)
130 PRK13650 cbiO cobalt transport 100.0 2.4E-38 5.2E-43 354.4 22.1 217 573-812 4-225 (279)
131 COG4988 CydD ABC-type transpor 100.0 2.9E-38 6.3E-43 362.8 23.0 214 571-813 318-540 (559)
132 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 5.8E-38 1.3E-42 343.8 24.5 213 574-812 2-217 (236)
133 PRK10908 cell division protein 100.0 6.1E-38 1.3E-42 340.5 24.1 209 574-806 2-216 (222)
134 PRK11174 cysteine/glutathione 100.0 2.6E-37 5.7E-42 384.1 33.2 212 572-813 348-569 (588)
135 cd03264 ABC_drug_resistance_li 100.0 3.4E-38 7.3E-43 339.8 21.9 208 575-809 2-211 (211)
136 PRK10895 lipopolysaccharide AB 100.0 4.4E-38 9.6E-43 346.0 22.9 215 574-812 4-222 (241)
137 PRK13641 cbiO cobalt transport 100.0 4.8E-38 1E-42 353.5 23.6 220 573-812 2-230 (287)
138 TIGR00972 3a0107s01c2 phosphat 100.0 7.8E-38 1.7E-42 345.2 24.1 215 574-812 2-228 (247)
139 PRK13636 cbiO cobalt transport 100.0 6.4E-38 1.4E-42 351.7 23.8 217 573-813 5-228 (283)
140 TIGR02211 LolD_lipo_ex lipopro 100.0 7.8E-38 1.7E-42 339.6 23.7 211 574-806 2-220 (221)
141 PRK13646 cbiO cobalt transport 100.0 4.9E-38 1.1E-42 353.2 22.7 219 573-812 2-231 (286)
142 PRK10070 glycine betaine trans 100.0 4.7E-38 1E-42 363.5 23.1 203 599-813 41-251 (400)
143 PRK11247 ssuB aliphatic sulfon 100.0 8.2E-38 1.8E-42 344.6 24.0 206 573-811 12-218 (257)
144 cd03262 ABC_HisP_GlnQ_permease 100.0 5.1E-38 1.1E-42 339.2 21.9 207 575-805 2-213 (213)
145 cd03257 ABC_NikE_OppD_transpor 100.0 8.9E-38 1.9E-42 341.1 23.8 216 574-809 2-228 (228)
146 PRK10619 histidine/lysine/argi 100.0 9.7E-38 2.1E-42 346.4 24.3 216 573-812 5-237 (257)
147 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 5.4E-37 1.2E-41 388.9 34.5 212 572-813 476-697 (710)
148 PRK13644 cbiO cobalt transport 100.0 5.8E-38 1.3E-42 350.4 22.6 215 574-813 2-221 (274)
149 PRK11124 artP arginine transpo 100.0 9E-38 1.9E-42 343.8 23.7 215 573-812 2-226 (242)
150 COG0444 DppD ABC-type dipeptid 100.0 8E-38 1.7E-42 337.1 22.4 225 574-813 2-240 (316)
151 COG1132 MdlB ABC-type multidru 100.0 1.6E-38 3.4E-43 392.6 19.4 215 572-813 327-549 (567)
152 PRK11614 livF leucine/isoleuci 100.0 5.9E-38 1.3E-42 344.1 21.8 214 573-813 5-223 (237)
153 TIGR01193 bacteriocin_ABC ABC- 100.0 6E-37 1.3E-41 388.0 34.2 212 573-813 473-694 (708)
154 KOG0056 Heavy metal exporter H 100.0 1.7E-39 3.6E-44 355.9 9.2 223 568-812 532-757 (790)
155 PRK13635 cbiO cobalt transport 100.0 7.4E-38 1.6E-42 350.2 22.7 216 573-812 5-225 (279)
156 PRK14268 phosphate ABC transpo 100.0 1.5E-37 3.2E-42 344.9 24.6 216 572-812 11-238 (258)
157 TIGR03005 ectoine_ehuA ectoine 100.0 1.2E-37 2.6E-42 344.8 23.6 215 574-812 1-232 (252)
158 PRK11176 lipid transporter ATP 100.0 1.5E-36 3.3E-41 377.0 36.2 214 573-813 341-564 (582)
159 TIGR03415 ABC_choXWV_ATP choli 100.0 7.1E-38 1.5E-42 359.3 22.3 205 597-813 35-251 (382)
160 cd03225 ABC_cobalt_CbiO_domain 100.0 6.5E-38 1.4E-42 337.7 20.8 194 599-804 14-211 (211)
161 PRK13652 cbiO cobalt transport 100.0 1.3E-37 2.9E-42 348.4 24.0 216 574-813 4-224 (277)
162 PRK13638 cbiO cobalt transport 100.0 1.2E-37 2.5E-42 348.1 23.4 214 574-812 2-221 (271)
163 PRK13548 hmuV hemin importer A 100.0 1.3E-37 2.7E-42 345.0 23.3 215 574-813 3-227 (258)
164 PRK14273 phosphate ABC transpo 100.0 1.9E-37 4.1E-42 343.6 24.3 216 573-812 7-234 (254)
165 PRK11022 dppD dipeptide transp 100.0 2.1E-37 4.6E-42 352.6 25.3 225 574-813 4-240 (326)
166 COG4987 CydC ABC-type transpor 100.0 2.2E-38 4.8E-43 356.8 16.9 213 573-813 336-558 (573)
167 PRK14247 phosphate ABC transpo 100.0 2E-37 4.4E-42 342.8 24.4 218 573-812 3-230 (250)
168 TIGR03740 galliderm_ABC gallid 100.0 2.3E-37 5E-42 336.2 24.4 198 599-813 13-210 (223)
169 PRK09473 oppD oligopeptide tra 100.0 2.1E-37 4.5E-42 352.9 24.8 226 573-813 12-248 (330)
170 PRK11300 livG leucine/isoleuci 100.0 1.7E-37 3.6E-42 344.7 23.4 219 573-813 5-240 (255)
171 TIGR03411 urea_trans_UrtD urea 100.0 1.8E-37 3.9E-42 341.6 23.5 216 574-812 3-227 (242)
172 cd03235 ABC_Metallic_Cations A 100.0 7.2E-38 1.6E-42 337.8 19.8 199 599-809 12-213 (213)
173 TIGR03375 type_I_sec_LssB type 100.0 7.1E-37 1.5E-41 386.5 32.1 214 572-813 462-685 (694)
174 TIGR02769 nickel_nikE nickel i 100.0 1.9E-37 4.2E-42 345.2 23.8 225 574-813 3-237 (265)
175 PRK13632 cbiO cobalt transport 100.0 1.8E-37 3.9E-42 346.4 23.6 216 573-812 7-227 (271)
176 TIGR01978 sufC FeS assembly AT 100.0 2.4E-37 5.2E-42 341.1 24.3 219 575-812 2-230 (243)
177 TIGR00958 3a01208 Conjugate Tr 100.0 9.4E-37 2E-41 384.3 32.9 212 573-813 478-699 (711)
178 PRK13649 cbiO cobalt transport 100.0 2E-37 4.4E-42 348.2 23.8 220 573-812 2-230 (280)
179 PRK14267 phosphate ABC transpo 100.0 2.5E-37 5.4E-42 342.7 24.0 218 573-812 4-233 (253)
180 PRK11308 dppF dipeptide transp 100.0 3.1E-37 6.6E-42 351.1 24.9 227 573-813 5-241 (327)
181 PRK13639 cbiO cobalt transport 100.0 3E-37 6.5E-42 345.1 24.3 216 574-813 2-223 (275)
182 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.4E-37 5.2E-42 333.2 22.6 194 604-809 16-211 (211)
183 PRK10575 iron-hydroxamate tran 100.0 2E-37 4.3E-42 345.1 22.6 219 573-813 11-234 (265)
184 PRK10584 putative ABC transpor 100.0 4.8E-37 1E-41 335.0 25.0 214 573-808 6-227 (228)
185 PRK11231 fecE iron-dicitrate t 100.0 2.1E-37 4.6E-42 343.3 22.2 218 574-813 3-224 (255)
186 PRK13640 cbiO cobalt transport 100.0 2.4E-37 5.1E-42 347.0 22.6 217 572-812 4-228 (282)
187 PRK14241 phosphate transporter 100.0 4E-37 8.8E-42 341.7 24.3 218 573-812 4-238 (258)
188 PRK13648 cbiO cobalt transport 100.0 3.8E-37 8.3E-42 343.6 24.2 217 573-813 7-228 (269)
189 TIGR03410 urea_trans_UrtE urea 100.0 2.4E-37 5.3E-42 337.8 22.0 211 575-813 2-218 (230)
190 PRK09984 phosphonate/organopho 100.0 3.1E-37 6.6E-42 343.4 23.1 221 573-813 4-239 (262)
191 cd03267 ABC_NatA_like Similar 100.0 4.1E-37 8.9E-42 336.5 23.4 201 597-809 32-236 (236)
192 TIGR01277 thiQ thiamine ABC tr 100.0 5.2E-37 1.1E-41 330.8 23.8 198 601-810 13-212 (213)
193 TIGR03873 F420-0_ABC_ATP propo 100.0 2.6E-37 5.7E-42 342.8 22.0 218 574-813 2-223 (256)
194 PRK14245 phosphate ABC transpo 100.0 6.1E-37 1.3E-41 338.7 24.5 220 573-812 3-230 (250)
195 PRK14242 phosphate transporter 100.0 6.6E-37 1.4E-41 339.3 24.7 221 572-812 5-233 (253)
196 PRK15093 antimicrobial peptide 100.0 5.7E-37 1.2E-41 350.4 24.8 228 573-813 3-245 (330)
197 TIGR01184 ntrCD nitrate transp 100.0 3.9E-37 8.5E-42 335.3 22.4 198 602-811 1-199 (230)
198 PRK10253 iron-enterobactin tra 100.0 3.4E-37 7.5E-42 343.2 22.4 220 572-813 6-230 (265)
199 PRK10744 pstB phosphate transp 100.0 5.2E-37 1.1E-41 341.0 23.6 220 569-812 9-240 (260)
200 cd03233 ABC_PDR_domain1 The pl 100.0 7.7E-37 1.7E-41 325.8 23.8 196 573-809 3-202 (202)
201 TIGR00968 3a0106s01 sulfate AB 100.0 5.8E-37 1.3E-41 335.7 23.5 213 575-812 2-216 (237)
202 PRK13633 cobalt transporter AT 100.0 3.9E-37 8.4E-42 345.1 22.5 221 573-813 4-230 (280)
203 PRK13549 xylose transporter AT 100.0 5.7E-37 1.2E-41 372.9 25.5 222 573-814 5-230 (506)
204 cd03300 ABC_PotA_N PotA is an 100.0 1.1E-36 2.3E-41 332.7 24.9 212 575-811 2-215 (232)
205 PRK13645 cbiO cobalt transport 100.0 5.2E-37 1.1E-41 346.0 23.0 220 573-812 6-236 (289)
206 PRK14237 phosphate transporter 100.0 1.1E-36 2.5E-41 339.2 25.4 225 568-812 15-247 (267)
207 TIGR01846 type_I_sec_HlyB type 100.0 5.2E-36 1.1E-40 378.2 34.6 214 572-813 454-677 (694)
208 PRK14235 phosphate transporter 100.0 8.8E-37 1.9E-41 340.1 24.1 221 573-812 19-247 (267)
209 PRK10790 putative multidrug tr 100.0 4.3E-37 9.4E-42 382.1 23.8 211 573-813 340-560 (592)
210 cd03299 ABC_ModC_like Archeal 100.0 9.4E-37 2E-41 333.6 23.6 201 600-812 13-215 (235)
211 COG4598 HisP ABC-type histidin 100.0 1E-37 2.3E-42 301.6 13.8 207 596-813 16-238 (256)
212 PRK13547 hmuV hemin importer A 100.0 5.8E-37 1.3E-41 340.7 22.0 220 574-813 2-241 (272)
213 PRK14250 phosphate ABC transpo 100.0 5.9E-37 1.3E-41 336.6 21.7 210 573-812 3-217 (241)
214 PRK14269 phosphate ABC transpo 100.0 8.9E-37 1.9E-41 336.4 23.0 220 574-812 3-226 (246)
215 cd03232 ABC_PDR_domain2 The pl 100.0 1.1E-36 2.3E-41 322.2 22.7 190 573-809 3-192 (192)
216 PRK14256 phosphate ABC transpo 100.0 1.6E-36 3.5E-41 335.8 24.9 221 573-812 4-232 (252)
217 PRK11144 modC molybdate transp 100.0 7.8E-37 1.7E-41 352.1 23.2 192 604-813 16-215 (352)
218 PRK14259 phosphate ABC transpo 100.0 1E-36 2.2E-41 339.7 23.2 216 572-812 12-249 (269)
219 TIGR03608 L_ocin_972_ABC putat 100.0 8.5E-37 1.8E-41 327.9 21.8 189 599-799 11-206 (206)
220 PRK13642 cbiO cobalt transport 100.0 1.1E-36 2.3E-41 341.0 23.2 217 573-812 4-225 (277)
221 TIGR02142 modC_ABC molybdenum 100.0 6.5E-37 1.4E-41 353.4 22.0 196 604-813 15-218 (354)
222 PRK10771 thiQ thiamine transpo 100.0 1E-36 2.2E-41 333.1 22.0 212 574-812 2-215 (232)
223 PRK11160 cysteine/glutathione 100.0 5.1E-37 1.1E-41 378.4 21.9 214 572-813 337-559 (574)
224 PRK14257 phosphate ABC transpo 100.0 1.9E-36 4.1E-41 344.5 24.7 223 572-813 79-310 (329)
225 cd03213 ABCG_EPDR ABCG transpo 100.0 2.5E-36 5.4E-41 319.8 23.8 190 573-809 3-194 (194)
226 PRK15112 antimicrobial peptide 100.0 1.6E-36 3.4E-41 338.0 23.2 225 573-812 4-235 (267)
227 PRK14274 phosphate ABC transpo 100.0 2.2E-36 4.8E-41 336.0 23.9 216 573-812 12-239 (259)
228 COG4618 ArpD ABC-type protease 100.0 2.2E-37 4.8E-42 345.0 15.8 223 566-813 327-557 (580)
229 PRK10762 D-ribose transporter 100.0 1.8E-36 3.9E-41 368.1 25.1 220 573-814 4-228 (501)
230 TIGR02770 nickel_nikD nickel i 100.0 1.4E-36 3E-41 331.3 21.6 202 601-812 1-211 (230)
231 PRK14240 phosphate transporter 100.0 2.9E-36 6.3E-41 333.5 24.4 216 573-812 3-230 (250)
232 PRK14270 phosphate ABC transpo 100.0 2.6E-36 5.6E-41 334.0 23.9 216 573-812 4-231 (251)
233 PRK14260 phosphate ABC transpo 100.0 2.6E-36 5.6E-41 335.2 23.9 217 573-812 7-239 (259)
234 PRK14239 phosphate transporter 100.0 2.7E-36 5.8E-41 334.4 23.8 216 573-812 5-232 (252)
235 PRK14254 phosphate ABC transpo 100.0 4.2E-36 9.2E-41 336.8 25.1 215 573-812 39-265 (285)
236 cd03297 ABC_ModC_molybdenum_tr 100.0 2.2E-36 4.8E-41 326.3 21.9 191 604-809 16-214 (214)
237 PRK14244 phosphate ABC transpo 100.0 3.8E-36 8.3E-41 332.6 24.2 221 573-812 5-233 (251)
238 PRK14253 phosphate ABC transpo 100.0 3.4E-36 7.3E-41 332.8 23.7 220 573-812 3-229 (249)
239 PRK14272 phosphate ABC transpo 100.0 4.7E-36 1E-40 332.4 24.5 217 573-812 4-232 (252)
240 PRK10418 nikD nickel transport 100.0 4E-36 8.7E-41 332.7 23.8 214 573-812 4-226 (254)
241 PRK11701 phnK phosphonate C-P 100.0 3.8E-36 8.3E-41 333.8 23.6 216 573-812 6-237 (258)
242 PRK09700 D-allose transporter 100.0 2.5E-36 5.5E-41 367.9 24.3 220 573-814 5-232 (510)
243 TIGR01842 type_I_sec_PrtD type 100.0 1.2E-36 2.7E-41 373.6 21.3 215 573-812 316-538 (544)
244 PRK14262 phosphate ABC transpo 100.0 5.3E-36 1.1E-40 331.4 24.3 219 574-812 4-230 (250)
245 PRK15056 manganese/iron transp 100.0 3.5E-36 7.7E-41 336.2 22.7 219 573-813 6-227 (272)
246 COG1123 ATPase components of v 100.0 3.9E-36 8.4E-41 347.4 23.7 225 573-813 5-241 (539)
247 TIGR02203 MsbA_lipidA lipid A 100.0 2.5E-35 5.3E-40 365.9 32.7 214 573-813 330-553 (571)
248 PRK13543 cytochrome c biogenes 100.0 5.5E-36 1.2E-40 322.7 23.2 201 573-800 11-211 (214)
249 PRK00635 excinuclease ABC subu 100.0 2.7E-35 5.8E-40 381.7 34.0 136 670-813 759-903 (1809)
250 PRK10247 putative ABC transpor 100.0 3.7E-36 8.1E-41 326.6 22.0 211 573-811 7-222 (225)
251 COG4161 ArtP ABC-type arginine 100.0 1.8E-36 4E-41 287.6 16.9 215 573-811 2-225 (242)
252 PRK14236 phosphate transporter 100.0 7.7E-36 1.7E-40 333.5 25.0 221 572-812 24-252 (272)
253 TIGR02982 heterocyst_DevA ABC 100.0 6.6E-36 1.4E-40 323.9 23.7 211 574-805 2-219 (220)
254 PRK14271 phosphate ABC transpo 100.0 6.5E-36 1.4E-40 334.0 24.0 220 573-812 21-247 (276)
255 cd03252 ABCC_Hemolysin The ABC 100.0 9.4E-37 2E-41 334.8 16.7 210 575-812 2-221 (237)
256 TIGR01166 cbiO cobalt transpor 100.0 4.1E-36 8.9E-41 317.9 20.7 179 598-786 4-188 (190)
257 PRK14261 phosphate ABC transpo 100.0 7.5E-36 1.6E-40 330.7 23.7 220 573-812 6-233 (253)
258 PRK14251 phosphate ABC transpo 100.0 7.7E-36 1.7E-40 330.4 23.7 216 573-812 4-231 (251)
259 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 6.6E-36 1.4E-40 324.1 22.6 192 597-809 33-224 (224)
260 PRK14275 phosphate ABC transpo 100.0 8.1E-36 1.7E-40 335.0 24.0 217 572-812 38-266 (286)
261 PRK13538 cytochrome c biogenes 100.0 5.2E-36 1.1E-40 320.6 21.4 198 574-799 2-201 (204)
262 PRK14263 phosphate ABC transpo 100.0 1.1E-35 2.5E-40 329.5 24.5 220 572-812 7-241 (261)
263 PRK14248 phosphate ABC transpo 100.0 1E-35 2.2E-40 332.1 24.3 216 573-812 21-248 (268)
264 COG1129 MglA ABC-type sugar tr 100.0 6.8E-36 1.5E-40 343.3 23.3 219 573-813 8-232 (500)
265 PRK14258 phosphate ABC transpo 100.0 1E-35 2.3E-40 330.5 24.2 222 573-812 7-241 (261)
266 PRK10419 nikE nickel transport 100.0 1.2E-35 2.7E-40 330.8 24.8 225 574-813 4-238 (268)
267 PRK15439 autoinducer 2 ABC tra 100.0 6.7E-36 1.5E-40 363.2 24.6 212 573-813 11-226 (510)
268 TIGR02633 xylG D-xylose ABC tr 100.0 9.1E-36 2E-40 362.5 25.7 220 574-813 2-227 (500)
269 cd03231 ABC_CcmA_heme_exporter 100.0 6.1E-36 1.3E-40 319.1 21.1 185 598-799 12-198 (201)
270 PRK14249 phosphate ABC transpo 100.0 1.2E-35 2.6E-40 328.7 24.2 220 573-812 4-231 (251)
271 PRK14265 phosphate ABC transpo 100.0 1.3E-35 2.8E-40 331.5 24.2 218 570-812 17-254 (274)
272 COG0488 Uup ATPase components 100.0 7.7E-35 1.7E-39 344.8 31.7 190 571-800 319-510 (530)
273 CHL00131 ycf16 sulfate ABC tra 100.0 2.8E-35 6.1E-40 326.2 26.2 221 573-812 7-237 (252)
274 PRK14255 phosphate ABC transpo 100.0 1.8E-35 3.9E-40 327.6 24.4 216 573-812 5-232 (252)
275 PRK14238 phosphate transporter 100.0 1.3E-35 2.8E-40 331.2 23.0 216 573-812 24-251 (271)
276 COG4604 CeuD ABC-type enteroch 100.0 6.7E-37 1.5E-41 301.3 10.9 208 597-814 12-223 (252)
277 PRK00349 uvrA excinuclease ABC 100.0 4.7E-35 1E-39 366.7 30.4 124 673-812 791-923 (943)
278 PRK13657 cyclic beta-1,2-gluca 100.0 4.5E-36 9.9E-41 372.4 21.1 212 573-813 334-555 (588)
279 PRK10982 galactose/methyl gala 100.0 1.1E-35 2.5E-40 360.5 23.8 208 598-814 10-221 (491)
280 TIGR02868 CydC thiol reductant 100.0 2.3E-36 5.1E-41 370.8 17.9 188 572-785 333-529 (529)
281 PRK14243 phosphate transporter 100.0 1.5E-35 3.3E-40 329.6 22.6 219 573-812 10-244 (264)
282 PRK11288 araG L-arabinose tran 100.0 1.5E-35 3.3E-40 360.0 24.7 217 573-811 4-224 (501)
283 PRK13546 teichoic acids export 100.0 3.6E-35 7.9E-40 324.5 25.2 221 571-813 2-229 (264)
284 cd03251 ABCC_MsbA MsbA is an e 100.0 2.7E-36 5.7E-41 330.7 15.9 197 599-812 15-221 (234)
285 TIGR02323 CP_lyasePhnK phospho 100.0 1.7E-35 3.7E-40 328.0 22.6 216 573-812 3-234 (253)
286 PRK03695 vitamin B12-transport 100.0 1.3E-35 2.9E-40 326.9 21.6 199 601-813 11-219 (248)
287 cd03245 ABCC_bacteriocin_expor 100.0 7.3E-36 1.6E-40 324.0 19.2 209 574-809 3-220 (220)
288 PRK14264 phosphate ABC transpo 100.0 3.8E-35 8.2E-40 332.3 25.6 223 573-812 45-285 (305)
289 cd03230 ABC_DR_subfamily_A Thi 100.0 1.2E-35 2.6E-40 308.9 19.8 158 599-804 13-172 (173)
290 PRK13539 cytochrome c biogenes 100.0 1.4E-35 3.1E-40 317.7 20.7 196 574-799 3-198 (207)
291 PRK10789 putative multidrug tr 100.0 4.9E-36 1.1E-40 369.6 19.3 213 573-813 313-535 (569)
292 TIGR02857 CydD thiol reductant 100.0 1.9E-34 4.1E-39 354.0 32.4 200 573-799 320-529 (529)
293 COG4619 ABC-type uncharacteriz 100.0 1.3E-36 2.8E-41 291.3 9.9 198 593-805 10-212 (223)
294 PRK14266 phosphate ABC transpo 100.0 3.5E-35 7.6E-40 324.9 22.8 220 573-812 3-230 (250)
295 PRK14246 phosphate ABC transpo 100.0 4E-35 8.7E-40 324.4 23.1 215 573-812 10-237 (257)
296 PRK09580 sufC cysteine desulfu 100.0 4.5E-35 9.7E-40 323.9 23.5 220 574-812 2-231 (248)
297 TIGR01189 ccmA heme ABC export 100.0 2.9E-35 6.2E-40 313.4 20.9 175 598-786 12-188 (198)
298 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.1E-35 2.5E-40 329.4 18.5 212 573-814 2-223 (275)
299 TIGR01192 chvA glucan exporter 100.0 1.4E-35 3E-40 366.0 21.0 212 573-813 334-555 (585)
300 PRK13540 cytochrome c biogenes 100.0 2.7E-35 5.9E-40 314.0 20.2 194 574-797 2-197 (200)
301 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 9.8E-36 2.1E-40 326.9 17.2 196 599-811 16-221 (238)
302 cd03254 ABCC_Glucan_exporter_l 100.0 1.7E-35 3.6E-40 323.3 18.0 210 573-811 2-221 (229)
303 PTZ00265 multidrug resistance 100.0 4.7E-34 1E-38 378.6 35.3 213 573-801 382-654 (1466)
304 COG4148 ModC ABC-type molybdat 100.0 4.1E-36 8.9E-41 310.9 11.8 192 604-813 16-215 (352)
305 PRK14252 phosphate ABC transpo 100.0 1.2E-34 2.7E-39 322.9 24.7 216 572-812 15-245 (265)
306 TIGR03269 met_CoM_red_A2 methy 100.0 5.1E-35 1.1E-39 357.4 23.6 215 575-812 2-254 (520)
307 TIGR02324 CP_lyasePhnL phospho 100.0 6.9E-35 1.5E-39 317.1 22.0 209 574-799 2-222 (224)
308 cd03229 ABC_Class3 This class 100.0 3.3E-35 7.1E-40 307.1 18.4 160 599-804 13-178 (178)
309 PRK10261 glutathione transport 100.0 5.2E-35 1.1E-39 362.3 23.2 221 573-813 12-255 (623)
310 PRK13545 tagH teichoic acids e 100.0 8.5E-35 1.9E-39 337.7 23.4 209 573-813 21-229 (549)
311 cd03253 ABCC_ATM1_transporter 100.0 2E-35 4.4E-40 324.1 16.7 197 599-812 14-220 (236)
312 PRK09544 znuC high-affinity zi 100.0 6.9E-35 1.5E-39 320.7 20.9 199 573-812 4-205 (251)
313 TIGR02204 MsbA_rel ABC transpo 100.0 2.6E-35 5.6E-40 365.8 19.6 213 573-812 337-559 (576)
314 COG0396 sufC Cysteine desulfur 100.0 2.4E-34 5.2E-39 292.4 22.9 229 573-825 3-238 (251)
315 cd03215 ABC_Carb_Monos_II This 100.0 6.8E-35 1.5E-39 305.9 19.6 172 573-805 4-182 (182)
316 cd03244 ABCC_MRP_domain2 Domai 100.0 4.2E-35 9.1E-40 318.2 18.6 209 573-810 2-220 (221)
317 PRK15134 microcin C ABC transp 100.0 1.2E-34 2.7E-39 354.4 24.7 223 573-813 5-243 (529)
318 cd03247 ABCC_cytochrome_bd The 100.0 5.5E-35 1.2E-39 305.6 17.9 175 575-809 2-178 (178)
319 COG3845 ABC-type uncharacteriz 100.0 1.3E-34 2.7E-39 324.6 21.8 216 573-810 4-223 (501)
320 cd03246 ABCC_Protease_Secretio 100.0 6.4E-35 1.4E-39 303.4 18.1 169 575-805 2-173 (173)
321 TIGR03771 anch_rpt_ABC anchore 100.0 1.2E-34 2.5E-39 314.3 20.0 195 607-813 1-198 (223)
322 cd03248 ABCC_TAP TAP, the Tran 100.0 3.4E-35 7.3E-40 320.0 15.5 211 573-805 11-226 (226)
323 COG1119 ModF ABC-type molybden 100.0 8.4E-35 1.8E-39 299.8 17.2 219 570-810 28-256 (257)
324 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.8E-34 3.8E-39 307.4 20.4 183 575-811 2-189 (200)
325 TIGR00630 uvra excinuclease AB 100.0 2.1E-33 4.6E-38 351.2 32.3 124 673-812 789-921 (924)
326 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.1E-34 6.6E-39 307.9 20.4 199 573-811 6-207 (207)
327 COG5265 ATM1 ABC-type transpor 100.0 1.5E-35 3.3E-40 323.1 10.3 223 569-813 258-483 (497)
328 cd03288 ABCC_SUR2 The SUR doma 100.0 8.4E-35 1.8E-39 322.5 16.3 213 572-813 18-240 (257)
329 PRK10938 putative molybdenum t 100.0 2E-34 4.3E-39 349.8 19.4 207 574-813 4-221 (490)
330 COG3845 ABC-type uncharacteriz 100.0 2.5E-32 5.4E-37 306.2 34.5 221 572-813 256-489 (501)
331 PRK13541 cytochrome c biogenes 100.0 5.8E-34 1.3E-38 302.5 19.9 183 574-786 2-184 (195)
332 cd03214 ABC_Iron-Siderophores_ 100.0 2.1E-34 4.5E-39 301.7 16.1 165 599-809 12-180 (180)
333 PRK10522 multidrug transporter 100.0 1.1E-32 2.4E-37 338.6 33.8 207 573-810 322-532 (547)
334 TIGR01187 potA spermidine/putr 100.0 5.1E-34 1.1E-38 325.5 20.2 185 617-813 1-187 (325)
335 TIGR01194 cyc_pep_trnsptr cycl 100.0 6.3E-33 1.4E-37 340.7 30.5 211 572-808 336-551 (555)
336 cd03223 ABCD_peroxisomal_ALDP 100.0 9.4E-34 2E-38 292.1 19.6 152 599-804 14-165 (166)
337 cd03216 ABC_Carb_Monos_I This 100.0 1.3E-33 2.8E-38 290.1 19.2 157 575-807 2-162 (163)
338 cd03250 ABCC_MRP_domain1 Domai 100.0 9.6E-34 2.1E-38 303.4 17.8 179 599-804 18-204 (204)
339 KOG0059 Lipid exporter ABCA1 a 100.0 2.2E-32 4.7E-37 348.6 33.1 207 601-823 580-790 (885)
340 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.5E-33 5.4E-38 306.9 21.1 201 600-825 8-216 (246)
341 cd03228 ABCC_MRP_Like The MRP 100.0 1.1E-33 2.3E-38 293.7 17.1 153 600-804 16-171 (171)
342 COG4674 Uncharacterized ABC-ty 100.0 8.6E-34 1.9E-38 279.0 14.5 218 573-813 5-232 (249)
343 cd03290 ABCC_SUR1_N The SUR do 100.0 3E-33 6.6E-38 302.7 20.0 188 599-803 14-217 (218)
344 PRK10535 macrolide transporter 100.0 9.5E-33 2E-37 343.2 26.7 219 573-813 4-229 (648)
345 cd03291 ABCC_CFTR1 The CFTR su 100.0 7.5E-33 1.6E-37 308.1 22.3 199 571-812 37-243 (282)
346 COG4586 ABC-type uncharacteriz 100.0 1.2E-33 2.7E-38 292.4 14.2 202 599-812 37-242 (325)
347 COG4608 AppF ABC-type oligopep 100.0 4.1E-33 9E-38 294.6 18.2 190 573-813 4-196 (268)
348 PRK15177 Vi polysaccharide exp 100.0 9.8E-33 2.1E-37 296.4 19.0 188 600-813 1-189 (213)
349 COG4172 ABC-type uncharacteriz 100.0 3.5E-32 7.6E-37 294.3 20.5 226 573-813 6-244 (534)
350 COG1101 PhnK ABC-type uncharac 100.0 1.6E-32 3.6E-37 274.5 16.6 205 598-811 18-233 (263)
351 PRK15064 ABC transporter ATP-b 100.0 2.4E-32 5.1E-37 334.4 21.3 206 574-812 2-238 (530)
352 PRK11819 putative ABC transpor 100.0 5.8E-32 1.3E-36 331.9 23.3 207 573-812 6-246 (556)
353 COG4136 ABC-type uncharacteriz 100.0 1.6E-32 3.5E-37 258.0 13.7 195 597-811 13-210 (213)
354 PLN03232 ABC transporter C fam 100.0 5.8E-32 1.3E-36 362.5 22.8 204 573-813 614-825 (1495)
355 cd03236 ABC_RNaseL_inhibitor_d 100.0 5.7E-32 1.2E-36 297.2 17.1 192 600-811 15-222 (255)
356 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.1E-31 2.4E-36 329.5 21.5 207 573-812 4-244 (552)
357 PLN03130 ABC transporter C fam 100.0 1.7E-31 3.7E-36 357.6 23.2 204 573-814 614-826 (1622)
358 cd03238 ABC_UvrA The excision 100.0 3.2E-31 6.8E-36 273.0 18.7 154 598-801 7-163 (176)
359 cd03222 ABC_RNaseL_inhibitor T 100.0 2.3E-31 4.9E-36 274.3 17.7 156 598-823 12-170 (177)
360 KOG0927 Predicted transporter 100.0 8.2E-31 1.8E-35 294.3 23.5 202 571-811 387-591 (614)
361 TIGR00954 3a01203 Peroxysomal 100.0 3E-31 6.5E-36 330.0 19.3 199 573-803 451-655 (659)
362 COG1134 TagH ABC-type polysacc 100.0 2.2E-30 4.8E-35 267.9 21.8 227 573-824 3-240 (249)
363 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 8.7E-31 1.9E-35 263.0 17.4 132 599-804 13-144 (144)
364 COG4133 CcmA ABC-type transpor 100.0 9.2E-31 2E-35 257.9 15.0 178 596-786 12-191 (209)
365 COG4167 SapF ABC-type antimicr 100.0 6.5E-30 1.4E-34 248.2 17.2 205 598-813 25-236 (267)
366 TIGR00957 MRP_assoc_pro multi 100.0 4.8E-30 1E-34 344.6 21.0 206 573-813 636-847 (1522)
367 COG4107 PhnK ABC-type phosphon 100.0 8.4E-30 1.8E-34 245.4 15.0 201 598-813 18-238 (258)
368 PRK10636 putative ABC transpor 100.0 1.9E-29 4.1E-34 312.8 21.9 204 574-811 2-231 (638)
369 cd00267 ABC_ATPase ABC (ATP-bi 100.0 3.1E-29 6.7E-34 256.7 17.1 141 599-801 12-155 (157)
370 PRK11147 ABC transporter ATPas 100.0 5.6E-29 1.2E-33 309.6 22.7 204 573-811 3-238 (635)
371 PRK13409 putative ATPase RIL; 100.0 2E-29 4.3E-34 307.7 16.6 180 599-800 87-285 (590)
372 TIGR01271 CFTR_protein cystic 100.0 3.5E-29 7.5E-34 335.2 19.8 190 599-814 439-634 (1490)
373 KOG0054 Multidrug resistance-a 100.0 1E-28 2.2E-33 312.7 20.0 206 572-814 517-729 (1381)
374 PTZ00243 ABC transporter; Prov 100.0 2.2E-28 4.8E-33 327.5 19.5 192 597-813 671-867 (1560)
375 COG0488 Uup ATPase components 100.0 4.9E-28 1.1E-32 287.0 19.3 204 573-810 3-234 (530)
376 cd03270 ABC_UvrA_I The excisio 100.0 1.2E-27 2.6E-32 259.2 20.7 198 598-809 7-226 (226)
377 COG1245 Predicted ATPase, RNas 100.0 6.2E-27 1.3E-31 257.3 24.6 168 605-799 360-529 (591)
378 PF00005 ABC_tran: ABC transpo 100.0 3.6E-28 7.8E-33 243.1 12.1 134 602-754 1-137 (137)
379 COG4778 PhnL ABC-type phosphon 99.9 9E-28 2E-32 230.9 13.1 191 598-799 23-225 (235)
380 cd03271 ABC_UvrA_II The excisi 99.9 3.4E-27 7.4E-32 257.5 19.3 197 599-811 8-261 (261)
381 PLN03073 ABC transporter F fam 99.9 6.2E-28 1.3E-32 299.5 14.2 216 572-811 176-426 (718)
382 cd03278 ABC_SMC_barmotin Barmo 99.9 1E-26 2.2E-31 245.9 12.7 168 603-803 14-192 (197)
383 COG4138 BtuD ABC-type cobalami 99.9 2.7E-26 5.8E-31 221.7 6.6 197 600-814 13-219 (248)
384 COG4178 ABC-type uncharacteriz 99.9 2.3E-24 5.1E-29 253.0 15.5 198 572-802 391-589 (604)
385 KOG0066 eIF2-interacting prote 99.9 1.8E-23 3.9E-28 227.1 21.0 193 571-803 584-778 (807)
386 KOG0062 ATPase component of AB 99.9 8E-23 1.7E-27 229.1 26.3 198 571-807 360-559 (582)
387 COG1135 AbcC ABC-type metal io 99.9 9.4E-25 2E-29 231.9 10.3 141 2-148 77-228 (339)
388 cd03272 ABC_SMC3_euk Eukaryoti 99.9 3.4E-24 7.3E-29 236.3 13.3 188 598-801 14-235 (243)
389 cd03240 ABC_Rad50 The catalyti 99.9 3.7E-24 8E-29 227.9 12.1 168 605-804 16-200 (204)
390 COG1126 GlnQ ABC-type polar am 99.9 7E-24 1.5E-28 214.3 12.3 139 2-147 71-221 (240)
391 cd03273 ABC_SMC2_euk Eukaryoti 99.9 3.3E-24 7.1E-29 237.0 10.3 179 612-800 25-242 (251)
392 cd03274 ABC_SMC4_euk Eukaryoti 99.9 2.7E-25 5.9E-30 237.6 1.5 180 597-802 15-205 (212)
393 COG4615 PvdE ABC-type sideroph 99.9 5.2E-24 1.1E-28 230.2 8.4 206 573-810 322-531 (546)
394 cd03279 ABC_sbcCD SbcCD and ot 99.9 2.8E-23 6E-28 223.5 13.9 180 603-803 18-210 (213)
395 COG0178 UvrA Excinuclease ATPa 99.9 1.2E-21 2.7E-26 230.0 26.9 127 673-814 783-917 (935)
396 PRK00635 excinuclease ABC subu 99.9 9E-22 2E-26 256.6 28.3 126 673-813 1660-1793(1809)
397 COG1131 CcmA ABC-type multidru 99.9 3.1E-23 6.7E-28 232.4 11.6 146 4-155 74-230 (293)
398 KOG0058 Peptide exporter, ABC 99.9 1.6E-23 3.6E-28 245.7 8.2 104 43-151 588-691 (716)
399 COG5265 ATM1 ABC-type transpor 99.9 5.5E-23 1.2E-27 225.3 7.6 138 5-151 334-486 (497)
400 KOG0056 Heavy metal exporter H 99.9 5.7E-23 1.2E-27 226.5 7.7 140 5-151 609-761 (790)
401 COG4170 SapD ABC-type antimicr 99.9 3.2E-22 6.9E-27 198.7 9.9 213 597-813 18-245 (330)
402 KOG0057 Mitochondrial Fe/S clu 99.9 3.5E-22 7.6E-27 226.4 9.8 144 3-151 420-574 (591)
403 COG4555 NatA ABC-type Na+ tran 99.9 1E-21 2.2E-26 195.5 10.2 137 5-148 72-219 (245)
404 COG3638 ABC-type phosphate/pho 99.9 7.8E-22 1.7E-26 202.2 9.4 112 34-151 126-237 (258)
405 COG2274 SunT ABC-type bacterio 99.8 1.3E-21 2.9E-26 239.8 10.9 143 2-151 541-696 (709)
406 KOG0060 Long-chain acyl-CoA tr 99.8 8.4E-21 1.8E-25 215.6 16.1 203 572-801 432-640 (659)
407 COG1125 OpuBA ABC-type proline 99.8 7.7E-21 1.7E-25 195.9 13.2 137 9-151 83-225 (309)
408 COG1120 FepC ABC-type cobalami 99.8 2.3E-21 4.9E-26 207.4 8.0 114 30-149 113-226 (258)
409 COG1122 CbiO ABC-type cobalt t 99.8 3.5E-21 7.7E-26 206.4 9.0 140 3-148 74-225 (235)
410 KOG0927 Predicted transporter 99.8 1E-20 2.3E-25 213.4 12.9 212 573-812 75-305 (614)
411 cd03276 ABC_SMC6_euk Eukaryoti 99.8 1.9E-20 4E-25 198.3 13.8 166 602-801 12-190 (198)
412 COG1127 Ttg2A ABC-type transpo 99.8 6E-21 1.3E-25 196.3 9.4 143 2-150 79-234 (263)
413 cd03275 ABC_SMC1_euk Eukaryoti 99.8 4.4E-21 9.6E-26 211.2 8.8 181 614-804 24-236 (247)
414 TIGR02314 ABC_MetN D-methionin 99.8 6E-21 1.3E-25 217.8 10.0 139 5-149 79-228 (343)
415 PRK13537 nodulation ABC transp 99.8 1.4E-20 3E-25 213.2 10.7 139 5-150 77-226 (306)
416 PF01061 ABC2_membrane: ABC-2 99.8 1.7E-21 3.6E-26 209.7 2.4 209 899-1113 1-210 (210)
417 COG1137 YhbG ABC-type (unclass 99.8 2.5E-20 5.5E-25 185.3 10.4 138 5-149 76-226 (243)
418 PRK11174 cysteine/glutathione 99.8 1.7E-20 3.7E-25 233.6 10.7 140 4-150 419-571 (588)
419 COG1136 SalX ABC-type antimicr 99.8 4.5E-20 9.8E-25 193.6 11.4 122 11-139 93-219 (226)
420 COG3840 ThiQ ABC-type thiamine 99.8 3.9E-20 8.5E-25 181.0 10.0 132 11-148 81-216 (231)
421 COG1124 DppF ABC-type dipeptid 99.8 3.8E-20 8.2E-25 191.6 10.5 134 13-151 96-231 (252)
422 TIGR01188 drrA daunorubicin re 99.8 3.6E-20 7.9E-25 210.1 11.3 139 6-151 64-213 (302)
423 PRK13634 cbiO cobalt transport 99.8 4E-20 8.6E-25 208.4 11.2 153 5-163 82-250 (290)
424 PRK11650 ugpC glycerol-3-phosp 99.8 5E-20 1.1E-24 212.1 12.2 132 12-149 87-222 (356)
425 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 4.2E-20 9.2E-25 196.5 10.2 109 33-149 117-225 (254)
426 PRK13643 cbiO cobalt transport 99.8 5.6E-20 1.2E-24 207.0 11.8 159 5-170 81-255 (288)
427 cd03261 ABC_Org_Solvent_Resist 99.8 4.4E-20 9.5E-25 202.4 10.3 137 6-148 75-223 (235)
428 COG1132 MdlB ABC-type multidru 99.8 3.8E-20 8.1E-25 229.2 10.5 142 3-151 398-552 (567)
429 PRK13637 cbiO cobalt transport 99.8 8.2E-20 1.8E-24 205.5 12.3 152 5-162 80-248 (287)
430 TIGR03265 PhnT2 putative 2-ami 99.8 8.9E-20 1.9E-24 209.8 11.6 133 12-150 87-223 (353)
431 TIGR03258 PhnT 2-aminoethylpho 99.8 1.1E-19 2.4E-24 209.2 11.8 132 12-149 90-226 (362)
432 TIGR01186 proV glycine betaine 99.8 1.2E-19 2.6E-24 208.1 11.8 133 12-150 82-218 (363)
433 PRK11432 fbpC ferric transport 99.8 1.2E-19 2.7E-24 208.2 11.8 133 11-149 88-224 (351)
434 PRK13536 nodulation factor exp 99.8 1.1E-19 2.3E-24 208.0 10.7 140 5-151 111-261 (340)
435 PRK11153 metN DL-methionine tr 99.8 8.6E-20 1.9E-24 210.0 9.7 137 7-149 81-228 (343)
436 PRK13631 cbiO cobalt transport 99.8 1.4E-19 3.1E-24 205.6 11.0 151 5-162 113-279 (320)
437 KOG2355 Predicted ABC-type tra 99.8 8.2E-19 1.8E-23 174.4 14.5 206 572-811 12-232 (291)
438 PRK09452 potA putrescine/sperm 99.8 1.9E-19 4.2E-24 207.9 11.5 133 11-149 96-232 (375)
439 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 1.1E-19 2.4E-24 229.8 10.3 138 3-150 522-672 (686)
440 PRK10851 sulfate/thiosulfate t 99.8 2.5E-19 5.5E-24 206.0 12.3 131 13-149 86-224 (353)
441 PRK13646 cbiO cobalt transport 99.8 1.9E-19 4.2E-24 202.5 10.7 139 5-149 82-233 (286)
442 cd03294 ABC_Pro_Gly_Bertaine T 99.8 2.8E-19 6E-24 199.6 11.7 112 32-149 137-248 (269)
443 PRK13636 cbiO cobalt transport 99.8 2.5E-19 5.4E-24 201.4 11.2 151 5-161 79-244 (283)
444 COG4988 CydD ABC-type transpor 99.8 2.7E-19 5.9E-24 206.8 11.4 139 5-150 392-542 (559)
445 cd03256 ABC_PhnC_transporter A 99.8 4E-19 8.6E-24 195.8 12.2 112 32-149 121-232 (241)
446 COG4987 CydC ABC-type transpor 99.8 2.2E-19 4.7E-24 203.8 10.2 139 6-151 410-561 (573)
447 PRK11607 potG putrescine trans 99.8 3.2E-19 6.9E-24 206.5 11.9 133 12-150 102-238 (377)
448 PRK13633 cobalt transporter AT 99.8 3.2E-19 7E-24 200.3 11.4 138 5-149 82-231 (280)
449 PRK11000 maltose/maltodextrin 99.8 3.6E-19 7.7E-24 206.5 11.7 131 13-149 87-221 (369)
450 PRK11160 cysteine/glutathione 99.8 2.5E-19 5.5E-24 221.4 11.0 141 4-151 410-562 (574)
451 cd03260 ABC_PstB_phosphate_tra 99.8 2.7E-19 5.9E-24 195.1 9.8 137 6-148 79-226 (227)
452 TIGR03522 GldA_ABC_ATP gliding 99.8 3.3E-19 7.1E-24 202.1 10.7 138 6-151 73-221 (301)
453 PRK13647 cbiO cobalt transport 99.8 5.5E-19 1.2E-23 197.6 12.3 136 6-148 77-224 (274)
454 PRK13651 cobalt transporter AT 99.8 3.6E-19 7.9E-24 201.2 11.0 151 5-162 102-268 (305)
455 PRK13650 cbiO cobalt transport 99.8 3.8E-19 8.3E-24 199.4 11.1 138 5-149 78-227 (279)
456 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 2.5E-19 5.4E-24 227.7 10.8 140 3-151 548-700 (710)
457 cd03296 ABC_CysA_sulfate_impor 99.8 5.1E-19 1.1E-23 194.4 11.7 110 33-148 114-223 (239)
458 TIGR01288 nodI ATP-binding ABC 99.8 4.8E-19 1E-23 201.1 11.9 138 6-150 75-223 (303)
459 cd03259 ABC_Carb_Solutes_like 99.8 4.2E-19 9.2E-24 191.6 10.8 107 32-144 107-213 (213)
460 cd03265 ABC_DrrA DrrA is the A 99.8 3.3E-19 7.2E-24 193.3 9.9 111 32-148 108-218 (220)
461 TIGR03375 type_I_sec_LssB type 99.8 3.5E-19 7.6E-24 225.6 11.5 142 3-151 534-688 (694)
462 TIGR01184 ntrCD nitrate transp 99.8 4.6E-19 1E-23 193.3 10.8 129 13-147 66-200 (230)
463 TIGR01187 potA spermidine/putr 99.8 5.6E-19 1.2E-23 201.9 11.9 131 13-149 54-188 (325)
464 PRK10790 putative multidrug tr 99.8 4.6E-19 1E-23 220.8 12.1 140 3-150 410-562 (592)
465 PRK11308 dppF dipeptide transp 99.8 4.2E-19 9E-24 202.5 10.6 116 29-150 127-243 (327)
466 TIGR02315 ABC_phnC phosphonate 99.8 5.4E-19 1.2E-23 194.9 11.2 111 32-148 122-232 (243)
467 PRK09536 btuD corrinoid ABC tr 99.8 3.9E-19 8.6E-24 206.4 10.5 138 5-149 74-226 (402)
468 PRK11022 dppD dipeptide transp 99.8 3.7E-19 8.1E-24 203.0 10.0 115 30-150 125-242 (326)
469 PRK10070 glycine betaine trans 99.8 6.6E-19 1.4E-23 204.4 12.2 136 8-149 106-252 (400)
470 cd03219 ABC_Mj1267_LivG_branch 99.8 6.1E-19 1.3E-23 193.6 11.4 110 32-148 120-229 (236)
471 PRK13652 cbiO cobalt transport 99.8 8E-19 1.7E-23 196.8 12.5 112 32-149 114-225 (277)
472 COG0444 DppD ABC-type dipeptid 99.8 7.3E-19 1.6E-23 190.6 11.0 118 29-149 124-241 (316)
473 PRK11144 modC molybdate transp 99.8 8.5E-19 1.8E-23 202.5 12.4 136 7-150 75-217 (352)
474 cd03301 ABC_MalK_N The N-termi 99.8 7.5E-19 1.6E-23 189.7 11.2 107 32-144 107-213 (213)
475 cd03293 ABC_NrtD_SsuB_transpor 99.8 8.3E-19 1.8E-23 190.2 11.4 110 32-147 108-219 (220)
476 TIGR03415 ABC_choXWV_ATP choli 99.8 8.3E-19 1.8E-23 202.0 11.9 132 12-149 117-252 (382)
477 cd03234 ABCG_White The White s 99.8 1.2E-18 2.6E-23 189.7 12.3 104 35-144 122-226 (226)
478 cd03258 ABC_MetN_methionine_tr 99.8 9.6E-19 2.1E-23 191.6 11.4 136 7-148 81-227 (233)
479 PRK11176 lipid transporter ATP 99.8 7.2E-19 1.6E-23 218.9 11.8 141 4-150 413-566 (582)
480 KOG0062 ATPase component of AB 99.8 9.9E-19 2.1E-23 196.5 11.6 176 597-800 91-269 (582)
481 cd03218 ABC_YhbG The ABC trans 99.8 9.9E-19 2.1E-23 191.4 11.4 134 8-148 75-219 (232)
482 COG0411 LivG ABC-type branched 99.8 1.2E-18 2.7E-23 180.7 11.2 134 11-150 89-238 (250)
483 PRK13638 cbiO cobalt transport 99.8 1.1E-18 2.4E-23 195.2 11.7 137 6-149 75-223 (271)
484 cd03226 ABC_cobalt_CbiO_domain 99.8 6.9E-19 1.5E-23 188.7 9.6 101 34-141 105-205 (205)
485 TIGR02142 modC_ABC molybdenum 99.8 1.1E-18 2.5E-23 201.8 11.8 137 7-149 74-219 (354)
486 cd03268 ABC_BcrA_bacitracin_re 99.8 1E-18 2.2E-23 187.9 10.5 132 6-144 70-208 (208)
487 TIGR01193 bacteriocin_ABC ABC- 99.8 7.4E-19 1.6E-23 223.2 11.1 142 3-151 543-697 (708)
488 cd03295 ABC_OpuCA_Osmoprotecti 99.8 1.3E-18 2.7E-23 191.7 11.3 136 7-148 74-222 (242)
489 PRK10253 iron-enterobactin tra 99.8 1.2E-18 2.6E-23 194.3 11.0 111 33-149 121-231 (265)
490 cd03263 ABC_subfamily_A The AB 99.8 1.1E-18 2.4E-23 189.4 10.4 134 7-148 74-218 (220)
491 PRK15079 oligopeptide ABC tran 99.8 1.4E-18 3.1E-23 198.2 11.7 115 29-149 134-249 (331)
492 PRK13645 cbiO cobalt transport 99.8 9.1E-19 2E-23 197.7 9.8 111 33-149 127-238 (289)
493 PRK09473 oppD oligopeptide tra 99.8 1.8E-18 3.8E-23 197.7 12.3 118 30-150 133-250 (330)
494 PRK10771 thiQ thiamine transpo 99.8 1.6E-18 3.5E-23 189.6 11.3 111 32-148 106-216 (232)
495 PRK13639 cbiO cobalt transport 99.8 1.9E-18 4.1E-23 193.6 12.1 137 6-149 76-224 (275)
496 PRK11831 putative ABC transpor 99.8 1.9E-18 4.1E-23 193.0 12.1 111 33-149 121-231 (269)
497 COG2401 ABC-type ATPase fused 99.8 2.3E-18 4.9E-23 187.8 12.2 181 598-802 395-585 (593)
498 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 2.1E-18 4.5E-23 189.2 12.1 111 32-149 109-219 (236)
499 cd03239 ABC_SMC_head The struc 99.8 7.5E-18 1.6E-22 175.0 15.4 76 726-803 95-174 (178)
500 PRK13648 cbiO cobalt transport 99.8 2.1E-18 4.5E-23 192.8 11.8 123 32-161 119-244 (269)
No 1
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-191 Score=1726.53 Aligned_cols=1118 Identities=50% Similarity=0.881 Sum_probs=1023.5
Q ss_pred HHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEE
Q 001048 35 QTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATA 114 (1174)
Q Consensus 35 ~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tv 114 (1174)
.+|.++++|||+||+||+|||++.||+|||||||||||+++|++|+++|+||+|+||||.++.++++.||+++|..+.|+
T Consensus 235 ~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~ 314 (1391)
T KOG0065|consen 235 MTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATA 314 (1391)
T ss_pred HHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHHHHhhCCCCCCCCCChhHHHHHhhCchhhhhhcccCCCCCCcCC
Q 001048 115 LISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQYWHCQDHPYSYVS 194 (1174)
Q Consensus 115 I~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~yf~~~G~~~p~~~n~adfl~~v~~~~~~~~~~~~~~~~~~~~~ 194 (1174)
+++||||+++++++||+|++|++|++||+||.+++++||+++||.||+++++|||++++++..++.+.|..++.++...+
T Consensus 315 ~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~ 394 (1391)
T KOG0065|consen 315 LVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTS 394 (1391)
T ss_pred EEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCccccccccccCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999998888888877777878788
Q ss_pred HHHHHHHHHhcccchhhHHHHHhhhccccccccccccccccccHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Q 001048 195 VDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWELLKTCATREFLLMKRNSSLYVFKSTQLVIIASVT 274 (1174)
Q Consensus 195 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~i~~~l~~ 274 (1174)
.+++.+.|++++.+..+..+++.+.++.+.++......+|..++|+|++.|++|.+..++||..++...+++.+++++++
T Consensus 395 ~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~ 474 (1391)
T KOG0065|consen 395 VSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALIT 474 (1391)
T ss_pred HHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHH
Confidence 89999999999999888888888777777777777888999999999999999999999999999999999999999999
Q ss_pred HhhhccccCCcchhhHhhHHHHHHHHHHHHHHhhhhhHHHHHhhhhHHhhhhcCCCCChhhHHHHHHHHhhhHHHHHHHH
Q 001048 275 MTVFLRSELAVDIIHANAYLGALFYALVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFV 354 (1174)
Q Consensus 275 g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~v~~rer~~~~y~~~~y~la~~l~~lp~~~~~~~~ 354 (1174)
|++||+... .+..+.+.+.|++||++++.++++++++...+.++|+++|||...+|+||++.++..++++|+.++..++
T Consensus 475 gslF~~~~~-~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~v 553 (1391)
T KOG0065|consen 475 GSLFYRTPM-STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVV 553 (1391)
T ss_pred hhheeeccC-cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHH
Confidence 999998763 4445678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhcccccCCCCCcceehh
Q 001048 355 WTSLTYYIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFIIPKKSMPSWLEWG 434 (1174)
Q Consensus 355 ~~~i~Y~~~gl~~~~~~f~~~~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~w~ 434 (1174)
|.+|+||++|+.+++++||.++++++++.++++++++++++++++..+|+.+|++.++++.+++||+||..+||+||+|+
T Consensus 554 f~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi 633 (1391)
T KOG0065|consen 554 FVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWI 633 (1391)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCHHHHHHHHHHHHhcCCCcccccc------------CC----CccchhhhhhhcCCc-----cCCcchhHHHHHHHH
Q 001048 435 FWVCPLTYGEIGLTVNEFLAPRWEKVI------------SG----NTTAGMQTLESRGLN-----FDSSFYWISIGALIG 493 (1174)
Q Consensus 435 ~~is~~~y~~~~l~~nef~~~~~~~~~------------~~----~~~~g~~~l~~~g~~-----~~~~~~w~~ig~Li~ 493 (1174)
+|++|+.|++++++.|||++.+|.|.. .. ..+.|..+++.+++. +...|+|+++|++++
T Consensus 634 ~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillg 713 (1391)
T KOG0065|consen 634 AYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLG 713 (1391)
T ss_pred HHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHH
Confidence 999999999999999999999998871 11 134577788877776 778899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccccchhhhhhhhccccCCCCCCCCCCCCCCCccCCCCCCCCCcc-ccccccCCCCcc
Q 001048 494 FTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGSDRDRSPTDAPLKAATGPKRGERPL-AHRKMILPFEPL 572 (1174)
Q Consensus 494 f~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 572 (1174)
|.+++..+..+++.+.++....++....++..+...... .......+.. .+... ..++...|.++.
T Consensus 714 f~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~---------~~s~~~~~~~~~~~~~~~ 780 (1391)
T KOG0065|consen 714 FTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKS----AGSSSEIEKL---------DDSSHQEKNKMVLPFTPL 780 (1391)
T ss_pred HHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchh----cccccccccc---------ccccccccccccCCCccc
Confidence 999999999999999998877666544433222111000 0000000000 00000 122344566677
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||.+.++.+-+.+..+ +++++|+|||+.++||.++||||+||||||||||+|+||...|.++|+|++||.|.
T Consensus 781 ~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~ 857 (1391)
T KOG0065|consen 781 SLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPK 857 (1391)
T ss_pred cccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeC
Confidence 788888888777765554433 56899999999999999999999999999999999999998889999999999998
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
++..++|.+|||.|+|.|.+.+||||.|.|+|.+|++.+++.+++.+.|+++++.++|++++|.+||.|| +|||.+|||
T Consensus 858 ~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRK 936 (1391)
T KOG0065|consen 858 DQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRK 936 (1391)
T ss_pred chhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhc
Confidence 8788999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHhhcCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANP-SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p-~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
|++||.+|+.|| .||+|||||||||+.++..|++.+|+++++|+||+||+||||.++++.||++++|.+||++||.||+
T Consensus 937 rLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~l 1016 (1391)
T KOG0065|consen 937 RLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPL 1016 (1391)
T ss_pred eeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCc
Confidence 999999999999 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhhhhhCCCcccCCCCCCCCccchhccCCcchhchhhhHHHHHhhcHHHHHHHHHHHhhcCCCCC-CCCCCCC
Q 001048 812 GQHSCKVIEYFECIPGVLKIKDNYNPATWMLEVSSNSMETQLGVDFAQIYRESTLYQENKELVKQLSSPSLG-SKDLHFP 890 (1174)
Q Consensus 812 ~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~ 890 (1174)
+++++++++||++++|. +||+..|||||++|+++...+.....||++.|++|++++++++.+++++.++++ .++....
T Consensus 1017 G~~s~~li~YFes~~~~-~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~ 1095 (1391)
T KOG0065|consen 1017 GENSSKLIEYFESIGGV-KCISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFK 1095 (1391)
T ss_pred ccccHHHHHHHHhcCCc-cCCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccc
Confidence 99999999999999876 677777999999999998887777889999999999999999999999888877 6666777
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhHHhHHHHHHHHHHHHHHH
Q 001048 891 THFPQNGWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAAVFFGIVNCS 970 (1174)
Q Consensus 891 ~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~ 970 (1174)
++|++|+|.|++.+++|++..+||+|.++.+|++..++.||++|+.||++| .+.+|++|.+|++|+++++.+..+..
T Consensus 1096 ~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g---~~~q~lqn~m~a~yma~v~~~~~~~~ 1172 (1391)
T KOG0065|consen 1096 TRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG---HNVQGLQNAMGAAYMATVFSGPNNNQ 1172 (1391)
T ss_pred cccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC---CcHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 789999999999999999999999999999999999999999999999998 46899999999999999999888877
Q ss_pred hHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHH
Q 001048 971 LVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYM 1050 (1174)
Q Consensus 971 ~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~ 1050 (1174)
...+.+..||.+++||+++|+||+.+|.+|++++|+|+.++++++|.+|+|+++||.+++.+|++|++.+++..++.+.+
T Consensus 1173 ~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~ 1252 (1391)
T KOG0065|consen 1173 LQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTL 1252 (1391)
T ss_pred hhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCcchhhhhhhhCHHHHHHHHHHHHhhCCCcccccccC------
Q 001048 1051 GMLIVSLTPNIQVASILASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISAFG------ 1124 (1174)
Q Consensus 1051 ~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~nef~~~~~~~~~~~------ 1124 (1174)
|+|+.+++||.++|+.+.++++.++.+|||+++|++.||.||+|+||+||+.|..++++..+++|.+..|...+
T Consensus 1253 Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~p 1332 (1391)
T KOG0065|consen 1253 GMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDP 1332 (1391)
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999887775322
Q ss_pred -CcccHHHHHhhhcC----CCccchhhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001048 1125 -KAKTVSAFLDDYFG----FDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174 (1174)
Q Consensus 1125 -~~~~~~~~~~~~~~----~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1174 (1174)
...++++|+.+.+| |.++.......+.+++.+++.+++.+.++|.++++|
T Consensus 1333 p~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1333 PSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred CCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 12789999999999 877777777778888999999999999999999986
No 2
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.4e-186 Score=1811.36 Aligned_cols=1167 Identities=56% Similarity=1.028 Sum_probs=1009.9
Q ss_pred hhcCCCCCccHHHHHHHhhhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 8 KLAGIFPDPDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 8 ~~~~~~~~~~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
|..+..|+.+++..|+....++.+.+..++++|+.+||++|+||+||+...|||||||||||+||++|+++|++||||||
T Consensus 284 k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEP 363 (1470)
T PLN03140 284 KDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEI 363 (1470)
T ss_pred HhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCC
Confidence 33445555566666665555555555678999999999999999999999999999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHHHHhhCCCCCCCCCChh
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVA 167 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~yf~~~G~~~p~~~n~a 167 (1174)
|||||+.++.++++.|+++++..|+|+|+++|||+++++++||+|++|++|+++|+||++++.+||+++||+||+++|||
T Consensus 364 TsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~A 443 (1470)
T PLN03140 364 STGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTA 443 (1470)
T ss_pred CcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChH
Confidence 99999999999999999999877899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCchhhhhhcccCCCCCCcCCHHHHHHHHHhcccchhhHHHHHhhhccccccccccccccccccHHHHHHHHHH
Q 001048 168 DFLQEVISRKDQAQYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAISFKKYSLTKWELLKTCAT 247 (1174)
Q Consensus 168 dfl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~ 247 (1174)
||+++++++.++.+.+.....++...+.+++.++|+++..+....+++..+.++...++......+|..+++.|++.|++
T Consensus 444 DFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~ 523 (1470)
T PLN03140 444 DFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWD 523 (1470)
T ss_pred HHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHH
Confidence 99999998766655443333444456788999999988776666555554433332223333445688999999999999
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHhhhccccCCcc-hhhHhhHHHHHHHHHHHHHHhhhhhHHHHHhhhhHHhhhh
Q 001048 248 REFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVD-IIHANAYLGALFYALVILIVDGFPEMNMTISRLAVFYKHR 326 (1174)
Q Consensus 248 R~~~~~~r~~~~~~~~~~~~i~~~l~~g~~f~~~~~~~~-~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~v~~rer 326 (1174)
|+++..+||+..+..++++.+++|+++|++||+.+.+.. ..+.+.+.|.+||++++.+++++.++..++.+|++|+|||
T Consensus 524 R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker 603 (1470)
T PLN03140 524 KEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQR 603 (1470)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhh
Confidence 999999999999999999999999999999998764432 2345667899999999888999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHhhhHHHHHHHHHHhhhhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 001048 327 DLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAI 406 (1174)
Q Consensus 327 ~~~~y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~ 406 (1174)
..++|++++|++|++++++|+.++.+++|++|+|||+|+++++.+|+.|+++++++.+++.++++++++++++..+|+.+
T Consensus 604 ~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~ 683 (1470)
T PLN03140 604 DLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTG 683 (1470)
T ss_pred hccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCcceehhhhhCHHHHHHHHHHHHhcCCCccccccC--CCccchhhhhhhcCCccCCcch
Q 001048 407 GTMAILMLLLFGGFIIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVIS--GNTTAGMQTLESRGLNFDSSFY 484 (1174)
Q Consensus 407 ~~~~~~~~~l~~Gf~i~~~~ip~~~~w~~~is~~~y~~~~l~~nef~~~~~~~~~~--~~~~~g~~~l~~~g~~~~~~~~ 484 (1174)
++++++++++|+||+++.++||+||+|++|+||++|+++++++|||.+..|.+..+ .+...|..+|+.+|+..+..|+
T Consensus 684 ~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~ 763 (1470)
T PLN03140 684 GALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWY 763 (1470)
T ss_pred HHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccch
Confidence 99999999999999999999999999999999999999999999998877654322 2457899999999998888899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhhhhhhhccccCC----CCCCCCC--CCC--CCCccCC-----
Q 001048 485 WISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCV----GSDRDRS--PTD--APLKAAT----- 551 (1174)
Q Consensus 485 w~~ig~Li~f~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~--~~~~~~~----- 551 (1174)
|.+++++++|.++|.+++++++.+.++.....+....++..+........ +.+.... ... .+.....
T Consensus 764 w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1470)
T PLN03140 764 WIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNR 843 (1470)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999887554433332211111000000000 0000000 000 0000000
Q ss_pred CCC-C-CCCccccccccCCCCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHH
Q 001048 552 GPK-R-GERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLM 629 (1174)
Q Consensus 552 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl 629 (1174)
... . .......++..+|..+..++|+||+|.++.+...++.+...+++++|+|||++++|||++||+|||||||||||
T Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL 923 (1470)
T PLN03140 844 DSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLM 923 (1470)
T ss_pred ccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHH
Confidence 000 0 00001112334567788999999999998776544444444556899999999999999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC
Q 001048 630 DVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE 709 (1174)
Q Consensus 630 ~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 709 (1174)
|+|+|+.++++.+|+|.+||++.....+++.+|||+|+|.+++.+||+|||.|++.++.+...+.+++.++++++++.++
T Consensus 924 ~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lg 1003 (1470)
T PLN03140 924 DVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVE 1003 (1470)
T ss_pred HHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCC
Confidence 99999977666899999999886544556779999999999999999999999988776655566667788999999999
Q ss_pred CCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHH
Q 001048 710 LDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDI 789 (1174)
Q Consensus 710 l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~ 789 (1174)
|.+++|+.+|.+++++|||||||||+||++|+.+|++|||||||||||+.++..+++.|++++++|+|||+++|||+.++
T Consensus 1004 L~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i 1083 (1470)
T PLN03140 1004 LDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1083 (1470)
T ss_pred ChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH
Confidence 99999999998887899999999999999999999999999999999999999999999999988999999999998778
Q ss_pred HHHhcceeEEecCcEEEEEcCCCccchhhhhhhhhCCCcccCCCCCCCCccchhccCCcchhchhhhHHHHHhhcHHHHH
Q 001048 790 FEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATWMLEVSSNSMETQLGVDFAQIYRESTLYQE 869 (1174)
Q Consensus 790 ~~~~d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~ 869 (1174)
++.||++++|.+||+++++|++++.++++++||++++|.++||+++|||||++|+++.+.+.....||++.|++|+++++
T Consensus 1084 ~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~ 1163 (1470)
T PLN03140 1084 FEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQR 1163 (1470)
T ss_pred HHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHH
Confidence 89999999998779999999998877899999999877767999999999999998866555556689999999999998
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHhhcccCCCCcchhh
Q 001048 870 NKELVKQLSSPSLGSKDLHFPTHFPQNGWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQD 949 (1174)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~ 949 (1174)
+++.+++...+.+..++....++++.++|+|+++|++|+++++||||.++.+|+++++++|+++|++||+++++..++++
T Consensus 1164 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~ 1243 (1470)
T PLN03140 1164 NKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNAND 1243 (1470)
T ss_pred HHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhh
Confidence 88777766555444444334567889999999999999999999999999999999999999999999999987777889
Q ss_pred hhhHHhHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 001048 950 VFNILGALFSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWS 1029 (1174)
Q Consensus 950 ~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~ 1029 (1174)
++++.|++|+++++.++.++.+++|.+..||++|+||+++|+|++.+|++|++++|+|+.++.+++|.+|+|||+||+++
T Consensus 1244 ~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~ 1323 (1470)
T PLN03140 1244 LTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWT 1323 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCcchhhhhhhhCHHHHHHHHHH
Q 001048 1030 GYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGML 1109 (1174)
Q Consensus 1030 ~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~ 1109 (1174)
+++||+|+++++++.++++++|+++++++||.++|..+++++++++++|+||++|+++||+||+|++|+||++|+++|++
T Consensus 1324 ~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~ 1403 (1470)
T PLN03140 1324 AAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLI 1403 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCcccccccCC--cccHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001048 1110 SSQYGDIDKEISAFGK--AKTVSAFLDDYFGFDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174 (1174)
Q Consensus 1110 ~nef~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1174 (1174)
+|||+|.+.+|.++|. ..++.+|++++|||+++++|++++|+++|+++|+++++++++++|||||
T Consensus 1404 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1404 VSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred HHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 9999998877776662 2578999999999999999999999999999999999999999999998
No 3
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.6e-167 Score=1642.39 Aligned_cols=1110 Identities=31% Similarity=0.539 Sum_probs=926.7
Q ss_pred HHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEE
Q 001048 36 TDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATAL 115 (1174)
Q Consensus 36 v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI 115 (1174)
++++|+.+||++++||+||++..|||||||||||+||++|+++|+||||||||||||+.++..+++.|+++++..|+|+|
T Consensus 185 ~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvi 264 (1394)
T TIGR00956 185 ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPL 264 (1394)
T ss_pred HHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999976789999
Q ss_pred EEecCCChhHHhhhhheeeecCCcEEEeCCcchHHHHHhhCCCCCCCCCChhHHHHHhhCchhhhhhcccCCCCCCcCCH
Q 001048 116 ISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEGCGFRCPDRKGVADFLQEVISRKDQAQYWHCQDHPYSYVSV 195 (1174)
Q Consensus 116 ~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~yf~~~G~~~p~~~n~adfl~~v~~~~~~~~~~~~~~~~~~~~~~ 195 (1174)
+++|||+.+++++||+|++|++|+++|+|+++++.+||+++||+||+++|||||+++++++.++. .....+. ....+.
T Consensus 265 i~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~-~~~~~e~-~~~~~~ 342 (1394)
T TIGR00956 265 VAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQ-IKPGYEK-KVPRTP 342 (1394)
T ss_pred EEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhh-ccccccc-cCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999998865432 1111111 123467
Q ss_pred HHHHHHHHhcccchhhHHHHHhhhccc---------------cccccccccccccccHHHHHHHHHHHHHHHhhcChHHH
Q 001048 196 DQFITKFKACHLGLMQDEELARSFNKS---------------ERHKNAISFKKYSLTKWELLKTCATREFLLMKRNSSLY 260 (1174)
Q Consensus 196 ~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~r~~~~~ 260 (1174)
+++.+.|+++..+....+++....++. +..+......++..++++|+..|++|+++..+||+..+
T Consensus 343 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~ 422 (1394)
T TIGR00956 343 QEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFT 422 (1394)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 889999988776554444433221110 00001122345778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCcchhhHhhHHHHHHHHHHHHHHhhhhhHHHHHhhhhHHhhhhcCCCCChhhHHHHH
Q 001048 261 VFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYALVILIVDGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPA 340 (1174)
Q Consensus 261 ~~~~~~~i~~~l~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~v~~rer~~~~y~~~~y~la~ 340 (1174)
.+++++.+++|+++|++||+.+ .+..+.+++.|++|+++.+..+.++.++..++.+|++|+|||..++|++++|++|+
T Consensus 423 ~~r~~~~ii~~li~G~~F~~~~--~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~ 500 (1394)
T TIGR00956 423 LFMVFGNIIMALILSSVFYNLP--KNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIAS 500 (1394)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHH
Confidence 9999999999999999999765 44557788999999999999998888888888999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhhhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhcc
Q 001048 341 SILKVPLSLLESFVWTSLTYYIIGFSPEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGF 420 (1174)
Q Consensus 341 ~l~~lp~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~~~~~l~~Gf 420 (1174)
+++++|+.++.+++|++|+|||+|+++++.+|+.|+++++++.+++.++++++++++|+..+|+.+++++++++++|+||
T Consensus 501 ~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf 580 (1394)
T TIGR00956 501 IISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGF 580 (1394)
T ss_pred HHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcceehhhhhCHHHHHHHHHHHHhcCCCcccccc--C-----------C------------Cccchhhhhhhc
Q 001048 421 IIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVI--S-----------G------------NTTAGMQTLESR 475 (1174)
Q Consensus 421 ~i~~~~ip~~~~w~~~is~~~y~~~~l~~nef~~~~~~~~~--~-----------~------------~~~~g~~~l~~~ 475 (1174)
+++.++||+||+|++|+||++|++++++.|||.+..+.|.. + + +...|+++|+.
T Consensus 581 ~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~- 659 (1394)
T TIGR00956 581 AIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL- 659 (1394)
T ss_pred ccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-
Confidence 99999999999999999999999999999999998876631 0 0 13478888885
Q ss_pred CCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhh--hhhhhccccC-----CCCCCCCCCCCCCCc
Q 001048 476 GLNFDSSFYWISIGALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEK--YLELQDQKDC-----VGSDRDRSPTDAPLK 548 (1174)
Q Consensus 476 g~~~~~~~~w~~ig~Li~f~~l~~~i~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~ 548 (1174)
++.+..++.|.+++++++|.+++.++..+++.+.++...........+ .......... .+.++.......+.
T Consensus 660 ~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~- 738 (1394)
T TIGR00956 660 SFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDL- 738 (1394)
T ss_pred cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceEeeccccccchhhcccccccccccccccccCCCCcc-
Confidence 455566789999999999999999999999988775443322211111 0000000000 00000000000000
Q ss_pred cCCCCCCCCCccccccccCCCCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHH
Q 001048 549 AATGPKRGERPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTL 628 (1174)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTL 628 (1174)
+.+............+.....++|+||++.+..+ .+++.+|+|||++++|||++||+||||||||||
T Consensus 739 ----~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTL 805 (1394)
T TIGR00956 739 ----TDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTL 805 (1394)
T ss_pred ----ccccccccccccccccCCCceEEEEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHH
Confidence 0000000000000001123458999999976421 234679999999999999999999999999999
Q ss_pred HHHHhCCCCCC-eEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHH
Q 001048 629 MDVLSGRKTGG-IIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQT 707 (1174)
Q Consensus 629 l~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 707 (1174)
||+|+|+.+++ +.+|+|.+||++... .+++.+|||+|+|.+++.+||+||+.|++.++.+...+++++.++++++++.
T Consensus 806 L~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~ 884 (1394)
T TIGR00956 806 LNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKL 884 (1394)
T ss_pred HHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 99999987643 467999999998753 4677899999999999999999999999888766555666777889999999
Q ss_pred cCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 708 IELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPS-IIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 708 l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~-illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
++|.+++|+.+|.++. +|||||||||+||+||+.+|+ ||+|||||||||+.++..+++.|++++++|+|||+++|||+
T Consensus 885 l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~ 963 (1394)
T TIGR00956 885 LEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPS 963 (1394)
T ss_pred cCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 9999999999987654 799999999999999999997 99999999999999999999999999888999999999998
Q ss_pred HHHHHHhcceeEEecCcEEEEEcCCCccchhhhhhhhhCCCcccCCCCCCCCccchhccCCcchhchhhhHHHHHhhcHH
Q 001048 787 IDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATWMLEVSSNSMETQLGVDFAQIYRESTL 866 (1174)
Q Consensus 787 ~~~~~~~d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~ 866 (1174)
..+++.+|++++|.+||+++++|++++.++++++||+++ |.++||+++|||||++|+++...+.....+|.+.|+.|+.
T Consensus 964 ~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~ 1042 (1394)
T TIGR00956 964 AILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSE 1042 (1394)
T ss_pred HHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHH
Confidence 667788999999987679999999988778899999998 5557999999999999998765443334689999999988
Q ss_pred HHHHHHHHHhhcCCCCCC---CCCCCCCCCCCchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHhhcccCCC
Q 001048 867 YQENKELVKQLSSPSLGS---KDLHFPTHFPQNGWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKK 943 (1174)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~ 943 (1174)
+++..+.++....+.... .+.....++++|+|+|+++|++|+++++||||.++.+|+++++++|+++|++||++++
T Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~- 1121 (1394)
T TIGR00956 1043 YQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT- 1121 (1394)
T ss_pred HHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC-
Confidence 877665554433221111 1111224678999999999999999999999999999999999999999999999975
Q ss_pred CcchhhhhhHHhHHHHHHHHHHHHHHHhHHHHHHHhhHHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001048 944 IKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVTTERTVL-YRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYP 1022 (1174)
Q Consensus 944 ~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~-~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~ 1022 (1174)
+++++++|+|++|+++++.++. +...+|.|+.||.+| +||+.+|+|++.+|++|++++|+|+.++.+++|++|+||
T Consensus 1122 --~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~ 1198 (1394)
T TIGR00956 1122 --SLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYY 1198 (1394)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheee
Confidence 4678999999999988877766 345667788888886 899999999999999999999999999999999999999
Q ss_pred cccccccHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCcchhhhh
Q 001048 1023 MIGYHWSGYK-------IFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCGFTIPKPQIPKWWTWA 1095 (1174)
Q Consensus 1023 ~~gl~~~~~~-------f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~ 1095 (1174)
|+||++++.. |++|++++++..++++++|+++++++|+..+|+.+++++++++++|+||++|+++||.||+|+
T Consensus 1199 ~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~ 1278 (1394)
T TIGR00956 1199 PVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFM 1278 (1394)
T ss_pred cccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHH
Confidence 9999988766 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCHHHHHHHHHHHHhhCCCcccccc-------------------------------cC---Cc-----ccHHHHHhhh
Q 001048 1096 YYLCPTSWVLKGMLSSQYGDIDKEISA-------------------------------FG---KA-----KTVSAFLDDY 1136 (1174)
Q Consensus 1096 ~y~sp~~y~~~~l~~nef~~~~~~~~~-------------------------------~~---~~-----~~~~~~~~~~ 1136 (1174)
+|+||++|+++|++.|||++.+..|.. |+ .| .++.+|+ ..
T Consensus 1279 ~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l-~~ 1357 (1394)
T TIGR00956 1279 YRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFL-EP 1357 (1394)
T ss_pred HhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHH-HH
Confidence 999999999999999999988754421 00 01 1445554 56
Q ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 001048 1137 FGFDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQR 1173 (1174)
Q Consensus 1137 ~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~ 1173 (1174)
+|++.++.|+|++|+++|++++ +++++++.+..+.+
T Consensus 1358 ~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~~ 1393 (1394)
T TIGR00956 1358 ISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLARVP 1393 (1394)
T ss_pred cCCcccccccchhhhhHHHHHH-HHHHHhhheEEEcC
Confidence 8999999999999999999888 88888888865544
No 4
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=4.9e-97 Score=910.71 Aligned_cols=584 Identities=24% Similarity=0.428 Sum_probs=483.0
Q ss_pred CccEEEEeceEEEEeeCCc----------------ccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHh
Q 001048 570 EPLTVTFEDLRYYVDIPSA----------------MRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS 633 (1174)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~ 633 (1174)
.++.++|.|++|++...+. .++.....+++++|+|+|+++++||++||+||||||||||||+|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 4678999999998865431 011111233578999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc
Q 001048 634 GRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI 713 (1174)
Q Consensus 634 g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 713 (1174)
|+.+++..+|+|.+||++... ..++.+|||+|++.+++.+||+||+.+++.++.+...+.+++.++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 987643468999999998653 2345689999999999999999999998877655444556667789999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHh
Q 001048 714 KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAF 793 (1174)
Q Consensus 714 ~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~ 793 (1174)
.|+.+|+...++|||||||||+||++|+++|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++.+.+
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999987778999999999999999999999999999999999999999999999998889999999999986788999
Q ss_pred cceeEEecCcEEEEEcCCCccchhhhhhhhhCCCcccCCCCCCCCccchhccCCcchh------c---hhhhHHHHHhhc
Q 001048 794 DDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATWMLEVSSNSMET------Q---LGVDFAQIYRES 864 (1174)
Q Consensus 794 d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~------~---~~~~~~~~~~~s 864 (1174)
|++++|. +|++++.|++ +++.+||+++| + +||+++|||||++|+++.+.+. . ......+.|++.
T Consensus 275 D~iilL~-~G~iv~~G~~----~~~~~~f~~~G-~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLS-EGRCLFFGKG----SDAMAYFESVG-F-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEec-CCcEEEECCH----HHHHHHHHHCC-C-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 9999997 5899999997 56899999994 4 7999999999999998753210 0 011223344321
Q ss_pred HHHHHHHHHHHh--hcCCCC------CCCCC-CCCCCCCCchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHH
Q 001048 865 TLYQENKELVKQ--LSSPSL------GSKDL-HFPTHFPQNGWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGI 935 (1174)
Q Consensus 865 ~~~~~~~~~~~~--~~~~~~------~~~~~-~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~ 935 (1174)
. .++..+..+. ...... ..+.. .....+.++||+|+++|++|++++ |||+.+..+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111111 000000 00000 011224578999999999999988 89999999999999999999999
Q ss_pred hhcccCCCCcchhhhhhHHhHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 001048 936 LFWQKGKKIKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVI 1015 (1174)
Q Consensus 936 ~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~ 1015 (1174)
+||+++ ..++++|.|++||++++.++.+++.+++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999874 457899999999999998888888889999999999999999999999999999999999999999999
Q ss_pred HHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCcchhhhh
Q 001048 1016 YVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCGFTIPKPQIPKWWTWA 1095 (1174)
Q Consensus 1016 ~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~ 1095 (1174)
|++|+|||+||++++.+||+|++++++..++++++|+++++++||..+|+.+++++++++++|+||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred hhhCHHHHHHHHHHHHhhCCCcc-----cccccC-CcccHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001048 1096 YYLCPTSWVLKGMLSSQYGDIDK-----EISAFG-KAKTVSAFLDDYFGFDHDFLGVVGIVLIIFPILFASLFAYFIGEL 1169 (1174)
Q Consensus 1096 ~y~sp~~y~~~~l~~nef~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~ 1169 (1174)
+|+||++|+||++++|||++.+. +|..+. .......+ ....+++....|.|+++|++++++|++++|++|+++
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKF-VEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCcc-chhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999986532 342111 00011111 222344456789999999999999999999999988
Q ss_pred cc
Q 001048 1170 NF 1171 (1174)
Q Consensus 1170 ~~ 1171 (1174)
+|
T Consensus 658 ~~ 659 (659)
T PLN03211 658 KH 659 (659)
T ss_pred cC
Confidence 76
No 5
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3e-97 Score=902.57 Aligned_cols=580 Identities=32% Similarity=0.553 Sum_probs=505.2
Q ss_pred CccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEEC
Q 001048 570 EPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIG 648 (1174)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~ 648 (1174)
.++.++|+|+++..+.+.. ..+++|+|||++++|||++|||||||||||||||+|+|+..++ ..+|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3567999999987654321 3578999999999999999999999999999999999998763 689999999
Q ss_pred CeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 649 GYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 649 g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
|++...+.+++.+|||.|+|.+++++||+|++.|.+.+|++...++++++++|+++++++||.+++|+++|.++.|++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98877778889999999999999999999999999999999888899999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+++|||+.++++.||++++|.+ |+++|+
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985 899999
Q ss_pred cCCCccchhhhhhhhhCCCcccCCCCCCCCccchhccCCc-chhchhhhHHHHHhhc------HHHHHHHHHHHhhcCCC
Q 001048 809 GPLGQHSCKVIEYFECIPGVLKIKDNYNPATWMLEVSSNS-METQLGVDFAQIYRES------TLYQENKELVKQLSSPS 881 (1174)
Q Consensus 809 G~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~-~~~~~~~~~~~~~~~s------~~~~~~~~~~~~~~~~~ 881 (1174)
|++ +++.+||++. |. +||++.|||||++|+.+.+ ..+. ..+..+.++.. ...++..+ ......
T Consensus 253 G~~----~~~~~ff~~~-G~-~~P~~~Npadf~l~l~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 322 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL-GF-PCPELENPADFLLDLLSVDSGTRE-LEEAVRIAKLINKFSQTDNLKKTLE---ALEKSL 322 (613)
T ss_pred cCH----HHHHHHHHhC-CC-CCCCcCChHHHHHHHHccCCCchh-HHhHHHHHHHhhhccccchhhhhHH---HHhhhc
Confidence 998 5689999999 44 6999999999999998853 1110 01111111111 00011100 000000
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhHHhHHHHHH
Q 001048 882 LGSKDLHFPTHFPQNGWEQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAA 961 (1174)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~ 961 (1174)
..... .+.....+||.|++.|++|.+++.+|||.+...|+++.+++|+++|++||++++ +..+++++.|++|+.+
T Consensus 323 ~~~~~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~~ 397 (613)
T KOG0061|consen 323 STSKK--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFIL 397 (613)
T ss_pred ccccc--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHHH
Confidence 00001 111126899999999999999999999999999999999999999999999965 4566779999999999
Q ss_pred HHHHHHHHHhHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHH
Q 001048 962 VFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMF 1041 (1174)
Q Consensus 962 ~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~ 1041 (1174)
.++.+.++...++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|+++++
T Consensus 398 ~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~ 477 (613)
T KOG0061|consen 398 SFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIIL 477 (613)
T ss_pred HHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 99989988888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCcchhhhhhhhCHHHHHHHHHHHHhhCCCccccc
Q 001048 1042 CNLLYFNYMGMLIVSLTPNIQVASILASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEIS 1121 (1174)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~nef~~~~~~~~ 1121 (1174)
+..++++++|++++++.||...|+.+++++++++++|+||+++.+++|.||+|++|+|+++|++||+++|||.+....|.
T Consensus 478 ~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~ 557 (613)
T KOG0061|consen 478 LSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCF 557 (613)
T ss_pred HHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987333332
Q ss_pred ccC--Cc-ccHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001048 1122 AFG--KA-KTVSAFLDDYFGFDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174 (1174)
Q Consensus 1122 ~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1174 (1174)
..+ .+ .++.+ ++.+.+++.++.|.|+.+++++.++|++++|++|++..+.+|
T Consensus 558 ~~~~~~~~~~~~~-~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 558 LSGNLCCESTGED-VLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cCcCCcccccHHH-HHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 221 22 33444 566789999999999999999999999999999999777654
No 6
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.9e-96 Score=905.75 Aligned_cols=566 Identities=31% Similarity=0.485 Sum_probs=497.8
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
++++|+|+|++++|||+++|+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 578999999999999999999999999999999999987643 3589999999987655667789999999999999999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCC-CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
+|||.|++.++.+....+++++++++++++.+||.+++|+.+|+++ .++|||||||||+||++|+++|++++|||||||
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999988877666677778889999999999999999999754 568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCccchhhhhhhhhCCCcccCCCCC
Q 001048 756 LDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNY 835 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~ 835 (1174)
||+.++..+++.|++++++|+|||+++|||+.++.+.||+++++. +|++++.|++ +++.+||++++ .+||++.
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~g--~~~p~~~ 269 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDLG--HPCPENY 269 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHcC--CCCCCCC
Confidence 999999999999999988899999999999878999999999997 5999999998 46889999994 4799999
Q ss_pred CCCccchhccCCcchhc-----hhhhHHHHHhhcHHHHHHHHHHHhhcCCCC---CCCCCCCCCCCCCchHHHHHHHHHH
Q 001048 836 NPATWMLEVSSNSMETQ-----LGVDFAQIYRESTLYQENKELVKQLSSPSL---GSKDLHFPTHFPQNGWEQFKACMWK 907 (1174)
Q Consensus 836 npad~~l~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~R 907 (1174)
|||||++|+++.+.+.. ...++.+.|+.++.+++..+..+....... ..........+..++|+|+++|++|
T Consensus 270 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R 349 (617)
T TIGR00955 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKR 349 (617)
T ss_pred ChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHH
Confidence 99999999987543211 123456677777666555433332111110 1111112235678999999999999
Q ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhHHhHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHh
Q 001048 908 HNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVTTERTVLYRER 987 (1174)
Q Consensus 908 ~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~ 987 (1174)
++++.||||.++.+|+++++++|+++|++||+++. ++++++++.|++|+++++.++.++...++.++.||++|+||+
T Consensus 350 ~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~ 426 (617)
T TIGR00955 350 SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRET 426 (617)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999975 457899999999999999999888888899999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 001048 988 FAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASIL 1067 (1174)
Q Consensus 988 ~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 1067 (1174)
.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+||+|++++++..++++++|+++++++|+..+|+.+
T Consensus 427 ~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~ 506 (617)
T TIGR00955 427 RSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTV 506 (617)
T ss_pred cCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCCcchhhhhhhhCHHHHHHHHHHHHhhCCCcc-ccccc---CCc-ccHHHHHhhhcCCCcc
Q 001048 1068 ASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDK-EISAF---GKA-KTVSAFLDDYFGFDHD 1142 (1174)
Q Consensus 1068 ~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~nef~~~~~-~~~~~---~~~-~~~~~~~~~~~~~~~~ 1142 (1174)
++++++++++|+||+++.++||+||+|++|+||++|++++++.|||++... +|... +.+ .++ +++++.||++.+
T Consensus 507 ~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g-~~~l~~~g~~~~ 585 (617)
T TIGR00955 507 GPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSG-EVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcCh-HHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999999999988764 44211 112 344 677789999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001048 1143 FLGVVGIVLIIFPILFASLFAYFIGELNFQRR 1174 (1174)
Q Consensus 1143 ~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1174 (1174)
+.|+++++|+++.++|++++|++||+-.+.+|
T Consensus 586 ~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 586 DLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999877776
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.1e-93 Score=944.53 Aligned_cols=591 Identities=24% Similarity=0.381 Sum_probs=506.2
Q ss_pred CccEEEEeceEEEEeeCCcc--cc---------------c--ccccccccccccceeEEeCCeEEEEecCCCCCHHHHHH
Q 001048 570 EPLTVTFEDLRYYVDIPSAM--RK---------------N--GFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMD 630 (1174)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~--~~---------------~--~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~ 630 (1174)
+.+.+.|+|++......... +. . +.+.+++++|+|+|+++++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 45679999999866322110 00 0 11223467999999999999999999999999999999
Q ss_pred HHhCCCCC--CeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC----CCCHHHHHHH-H
Q 001048 631 VLSGRKTG--GIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLST----QIDSKTKAEF-V 701 (1174)
Q Consensus 631 ~l~g~~~~--~~~~G~i~~~g~~~~~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~~-~ 701 (1174)
+|+|+.++ .+.+|+|.+||++... ...++.++||+|+|.+++.+||+||+.|++.++.+. ..++++..++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 99998632 2579999999998643 234567999999999999999999999998876542 2233443333 4
Q ss_pred HHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEE
Q 001048 702 NEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVC 780 (1174)
Q Consensus 702 ~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~ 780 (1174)
+++++.+||.+++|+++|+..+++|||||||||+||++|+.+|+|++|||||+|||+.++..+++.|++++++ |+|+|+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 6789999999999999998888999999999999999999999999999999999999999999999999874 999999
Q ss_pred EecCCCHHHHHHhcceeEEecCcEEEEEcCCCccchhhhhhhhhCCCcccCCCCCCCCccchhccCCcch----------
Q 001048 781 TIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDNYNPATWMLEVSSNSME---------- 850 (1174)
Q Consensus 781 ~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~---------- 850 (1174)
++|||+.++.+.+|++++|. +|+++++|++ .++.+||+++ |+ +||++.|||||++|+++++.+
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~-~G~iv~~G~~----~~~~~yF~~l-G~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~ 338 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLY-EGYQIYFGPA----DKAKQYFEKM-GF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKV 338 (1394)
T ss_pred EecCCCHHHHHhhceEEEEe-CCeEEEECCH----HHHHHHHHHc-CC-CCCCCCChHHHHHhccChhhhhccccccccC
Confidence 99999878999999999997 5999999997 5689999999 44 799999999999999875421
Q ss_pred hchhhhHHHHHhhcHHHHHHHHHHHhhcCCC---------------CCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhcC
Q 001048 851 TQLGVDFAQIYRESTLYQENKELVKQLSSPS---------------LGSKDLHFPTHFPQNGWEQFKACMWKHNLSYWRN 915 (1174)
Q Consensus 851 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~ 915 (1174)
.....++++.|++|+.+++..+.++...... ..++.....+.+..|+|+|+++|++|++++.|||
T Consensus 339 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd 418 (1394)
T TIGR00956 339 PRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGN 418 (1394)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 1124578999999998876665544321110 0001112234578899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhHHhHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHhcCCCCChH
Q 001048 916 PSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVTTERTVLYRERFAGMYSPW 995 (1174)
Q Consensus 916 ~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~ 995 (1174)
|.++.+|+++++++|+++|++||+++. +++++++|.|++||++++.++.++..+ +.+..||+||+||+.+++|+++
T Consensus 419 ~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ 494 (1394)
T TIGR00956 419 PSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPS 494 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcceeeeccccccCHH
Confidence 999999999999999999999999975 457899999999999999999887665 4566799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 001048 996 AYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQVASILASSFYSML 1075 (1174)
Q Consensus 996 ~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 1075 (1174)
+|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++||..+|+.+++++++++
T Consensus 495 ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~ 574 (1394)
T TIGR00956 495 ADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLAL 574 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCCcchhhhhhhhCHHHHHHHHHHHHhhCCCcccccc------------------------cCCc-ccHH
Q 001048 1076 NLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISA------------------------FGKA-KTVS 1130 (1174)
Q Consensus 1076 ~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~nef~~~~~~~~~------------------------~~~~-~~~~ 1130 (1174)
++|+||++|.++||+||+|++|+||++|+|||+++|||++..++|.. +|++ +++.
T Consensus 575 ~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~ 654 (1394)
T TIGR00956 575 SIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGD 654 (1394)
T ss_pred HHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHH
Confidence 99999999999999999999999999999999999999987766630 1112 4677
Q ss_pred HHHhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001048 1131 AFLDDYFGFDHDFLGVVGIVLIIFPILFASLFAYFIGELNF 1171 (1174)
Q Consensus 1131 ~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1171 (1174)
+|+...||++++|+|+|++||++|+++|+++++++++|+++
T Consensus 655 ~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 655 DYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred HHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88887899999999999999999999999999999999874
No 8
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.8e-92 Score=927.41 Aligned_cols=593 Identities=26% Similarity=0.411 Sum_probs=498.5
Q ss_pred CCccEEEEeceEEEEeeCCcccc--------------c----c---cccccccccccceeEEeCCeEEEEecCCCCCHHH
Q 001048 569 FEPLTVTFEDLRYYVDIPSAMRK--------------N----G---FNQTRLQLLSDITGTFRPGILTALMGVSGAGKTT 627 (1174)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~--------------~----~---~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKST 627 (1174)
.+.+.+.|+|+++........+. . + .++.++++|+|+|+.++|||+++|+|||||||||
T Consensus 127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 34678999999987663211100 0 1 1223567999999999999999999999999999
Q ss_pred HHHHHhCCCCCC-eEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCC-------CCHHHH--
Q 001048 628 LMDVLSGRKTGG-IIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQ-------IDSKTK-- 697 (1174)
Q Consensus 628 Ll~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~-------~~~~~~-- 697 (1174)
|||+|+|+.++. ..+|+|.+||++..+...++.++||+|+|.+++.+||+|||.|++.++.... ...+++
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 999999987632 3489999999987554446779999999999999999999999987653211 111111
Q ss_pred ----------------------HHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 698 ----------------------AEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 698 ----------------------~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
+..++++++.+||++++||.+|+...++|||||||||+||++|+.+|++++|||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 1235779999999999999999988899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCccchhhhhhhhhCCCcccCCCC
Q 001048 756 LDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLKIKDN 834 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~ 834 (1174)
||+.++.++++.|+++++ .|+|+|+++|||+.++++.||++++|. +|+++|+||+ +++.+||+++ |+ +||++
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~-~G~ivy~G~~----~~~~~yF~~l-Gf-~cP~~ 439 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLS-EGQIVYQGPR----DHILEFFESC-GF-KCPER 439 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEee-CceEEEeCCH----HHHHHHHHHc-CC-CCCCC
Confidence 999999999999999986 489999999999888999999999997 5999999997 5689999999 44 79999
Q ss_pred CCCCccchhccCCcch-h-----------chhhhHHHHHhhcHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCchHHHHH
Q 001048 835 YNPATWMLEVSSNSME-T-----------QLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGWEQFK 902 (1174)
Q Consensus 835 ~npad~~l~~~~~~~~-~-----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 902 (1174)
.|||||++|+++.... . ....++++.|++|+.+++..+.++.........+.....+.|..++|.|++
T Consensus 440 ~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~ 519 (1470)
T PLN03140 440 KGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLK 519 (1470)
T ss_pred CChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHH
Confidence 9999999999885332 1 123478899999988776654433211111111111123458889999999
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhHHhHHHHHHHHHHHHHHHhHHHHHHHhhHH
Q 001048 903 ACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVTTERTV 982 (1174)
Q Consensus 903 ~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v 982 (1174)
.|++|+++.++||+.++..|+++.+++|+++|++||+++.+..+..+.+.+.|++||++++.++.++.+ ++.++.||+|
T Consensus 520 ~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~-l~~~~~~r~v 598 (1470)
T PLN03140 520 ACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAE-LALMIQRLPV 598 (1470)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccch
Confidence 999999999999999999999999999999999999997654444556778899999998888877644 5777889999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH
Q 001048 983 LYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLTPNIQ 1062 (1174)
Q Consensus 983 ~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1174)
|+||+.+++|++++|++|++++|+|+.++.+++|.+|+|||+||++++++||+|+++++++.++++++++++++++|+..
T Consensus 599 f~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~ 678 (1470)
T PLN03140 599 FYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMI 678 (1470)
T ss_pred hHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCcchhhhhhhhCHHHHHHHHHHHHhhCCCccc-ccccCCc-ccHHHHHhhhcCCC
Q 001048 1063 VASILASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKE-ISAFGKA-KTVSAFLDDYFGFD 1140 (1174)
Q Consensus 1063 ~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~nef~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 1140 (1174)
+|+.+++++++++++|+||++|.++||+||+|++|+||++|+++|+++|||.+.... +.+.++. +++.++ ++.+|++
T Consensus 679 ~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~-L~~~g~~ 757 (1470)
T PLN03140 679 IANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAV-LNIFDVF 757 (1470)
T ss_pred HHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHH-HHhcCcC
Confidence 999999999999999999999999999999999999999999999999999775432 2222323 344554 4789997
Q ss_pred cc--chhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 001048 1141 HD--FLGVVGIVLIIFPILFASLFAYFIGELN 1170 (1174)
Q Consensus 1141 ~~--~~~~~~~il~~~~~~~~~~~~~~l~~~~ 1170 (1174)
.+ +.|+++++|++|+++|+++++++|++++
T Consensus 758 ~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 758 TDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 65 5699999999999999999999999987
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.3e-86 Score=808.55 Aligned_cols=565 Identities=28% Similarity=0.481 Sum_probs=501.3
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+..+|+|+|+-++|||++.++||+||||||||++|+|..+.. ...|+|.+||++.++...++.++|++|+|.|+|.+||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 457999999999999999999999999999999999976532 2367999999987664447889999999999999999
Q ss_pred HHHHHHHHhhccCCCC----CHHHHH-HHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeC
Q 001048 677 EESIVFSAWLRLSTQI----DSKTKA-EFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~----~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 751 (1174)
+|+|.|+++++.+... ++.++. +..+.+++.+||++++||++|+...||+||||||||+||.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 9999999999877322 222222 25778999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCccchhhhhhhhhCCCccc
Q 001048 752 PTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECIPGVLK 830 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~ 830 (1174)
+|.|||+.++.++++.|+++++. +.|++++.|||+.++++.||++++|.+ |+++|+||.+ ++.+||+++ |+ .
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~d----~~~~yFe~~-Gf-~ 359 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPRD----EVLPYFEDM-GF-K 359 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccHH----HHHHHHHhc-Cc-c
Confidence 99999999999999999999874 899999999999999999999999985 9999999984 689999998 44 6
Q ss_pred CCCCCCCCccchhccCCcchh------------chhhhHHHHHhhcHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCchH
Q 001048 831 IKDNYNPATWMLEVSSNSMET------------QLGVDFAQIYRESTLYQENKELVKQLSSPSLGSKDLHFPTHFPQNGW 898 (1174)
Q Consensus 831 ~~~~~npad~~l~~~~~~~~~------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 898 (1174)
||+..++|||+.++++...+. ....++.+.|.+|+.+++....++.........+.....+.|..|.|
T Consensus 360 cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~ 439 (1391)
T KOG0065|consen 360 CPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYW 439 (1391)
T ss_pred CCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHH
Confidence 999999999999999832110 12257999999999988877555433222222333344567889999
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhHHhHHHHHHHHHHHHHHHhHHHHHHH
Q 001048 899 EQFKACMWKHNLSYWRNPSYNLIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVTT 978 (1174)
Q Consensus 899 ~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~ 978 (1174)
.|++.|++|.+..+.||..+...++++.+++|+++|++|++.+. .+..+.+.|.|++||++++..++++.++ +...+
T Consensus 440 ~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~~ 516 (1391)
T KOG0065|consen 440 EQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTFQ 516 (1391)
T ss_pred HHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHHh
Confidence 99999999999999999999999999999999999999999972 5667789999999999999999887775 44567
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001048 979 ERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSLT 1058 (1174)
Q Consensus 979 er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~ 1058 (1174)
.||||+|||...+|++++|.++..++++|+.++.+++|.+|+||++||.+++++||.+++++++...+++++++++++++
T Consensus 517 ~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~ 596 (1391)
T KOG0065|consen 517 RLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLS 596 (1391)
T ss_pred hcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccccCCCCCcchhhhhhhhCHHHHHHHHHHHHhhCCCcccccc----------------
Q 001048 1059 PNIQVASILASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQYGDIDKEISA---------------- 1122 (1174)
Q Consensus 1059 ~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~nef~~~~~~~~~---------------- 1122 (1174)
++...|+.++++.++...+++||+||.++||+||+|++|+||+.|++|++++|||++.+.+|.+
T Consensus 597 ~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~ 676 (1391)
T KOG0065|consen 597 RTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCA 676 (1391)
T ss_pred chHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccch
Confidence 9999999999999999999999999999999999999999999999999999999998877751
Q ss_pred -----cCCc-ccHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001048 1123 -----FGKA-KTVSAFLDDYFGFDHDFLGVVGIVLIIFPILFASLFAYFIGELNFQ 1172 (1174)
Q Consensus 1123 -----~~~~-~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 1172 (1174)
+|+. +.+.+|+..+|+|++.|.|+|+||++||.++|.++..+++.|++..
T Consensus 677 ~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 677 ATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 1221 4567888888999999999999999999999999999999999853
No 10
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.5e-72 Score=684.15 Aligned_cols=491 Identities=26% Similarity=0.468 Sum_probs=408.7
Q ss_pred cchhhhcCCCCCccHH-------HHHHHhh-------hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchh
Q 001048 4 IKLEKLAGIFPDPDVD-------AYMKAIS-------AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 4 ~~~~~~~~~~~~~~v~-------~~~~~~~-------~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
..-++..|..+|+|+. |.+.-.+ ..++|++++||+++++|||++|+||+||++..|||||||||||
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence 4456777777776664 4443222 2568899999999999999999999999998899999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|||.+|++||+|||||||||||||.+|.+|+++||++|+. |||||+||||||+++|++||++++|++|+++|+|+++++
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~ 258 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPREL 258 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHH
Confidence 9999999999999999999999999999999999999986 999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCCCCChhHHHHHhhCchhhhhhcccCCCCCCcCCHHHHHHHHHhcccchhhHHHHHhhhcccccccccc
Q 001048 150 CKFFEGCGFRCPDRKGVADFLQEVISRKDQAQYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKSERHKNAI 229 (1174)
Q Consensus 150 ~~yf~~~G~~~p~~~n~adfl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 229 (1174)
.+||+++|++||++.||+||++++++..+..+... +........+.++..........+........ ..
T Consensus 259 ~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 327 (613)
T KOG0061|consen 259 LEFFSSLGFPCPELENPADFLLDLLSVDSGTRELE------EAVRIAKLINKFSQTDNLKKTLEALEKSLSTS-----KK 327 (613)
T ss_pred HHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHH------hHHHHHHHhhhccccchhhhhHHHHhhhcccc-----cc
Confidence 99999999999999999999999988431100000 00000011111110000000000000000000 00
Q ss_pred ccccccccHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHhhhccccCCcchhhHhhHHHHHHHHHHHHHHhhh
Q 001048 230 SFKKYSLTKWELLKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYALVILIVDGF 309 (1174)
Q Consensus 230 ~~~~~~~s~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~i~~~l~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~ 309 (1174)
.......++|.|+..+.+|.+++.+|++.+...|.++.+.+++++|.+||+.+ .+....+++.|++|+.+....+..+
T Consensus 328 ~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~--~~~~~~~~~~g~~~~~~~~~~f~~~ 405 (613)
T KOG0061|consen 328 VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLG--NDAKGIQNRLGLFFFILSFMTFLSM 405 (613)
T ss_pred cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCC--CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111678999999999999999999999999999999999999999999864 4444555888999999888877665
Q ss_pred h-hHHHHHhhhhHHhhhhcCCCCChhhHHHHHHHHhhhHHHHHHHHHHhhhhhccCccccHHHHHHHHHHHHHHHHHHHH
Q 001048 310 P-EMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYIIGFSPEVGRFIRQFLLFFAVHLTSIS 388 (1174)
Q Consensus 310 ~-~~~~~~~~~~v~~rer~~~~y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~l~~~l~~~~~~~ 388 (1174)
. .++.+..++++|.||+..++|+.++|++|+.++++|+.++.+++|.+|+|||+|++++..+|++|+++.++..+.+++
T Consensus 406 ~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s 485 (613)
T KOG0061|consen 406 FGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAES 485 (613)
T ss_pred HhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 4 688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHhhcccccCCCCCcceehhhhhCHHHHHHHHHHHHhcCCCccccccC---CCc
Q 001048 389 LFRAIASIFRTVAVSFAIGTMAILMLLLFGGFIIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRWEKVIS---GNT 465 (1174)
Q Consensus 389 l~~~i~a~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~w~~~is~~~y~~~~l~~nef~~~~~~~~~~---~~~ 465 (1174)
++.++++..|+...|..+++++++++++++||+++.+.+|.||+|+.|+|+.+|++++++.|||.+....|... .+.
T Consensus 486 ~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~ 565 (613)
T KOG0061|consen 486 LGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCE 565 (613)
T ss_pred HHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998733333221 256
Q ss_pred cchhhhhhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001048 466 TAGMQTLESRGLNFDSSFYWISIGALIGFTMLFNAVFTLALTFLK 510 (1174)
Q Consensus 466 ~~g~~~l~~~g~~~~~~~~w~~ig~Li~f~~l~~~i~~~~l~~~~ 510 (1174)
.+|.++++..++.. ..+|.++.++.++...++++++..+++..
T Consensus 566 ~~~~~~l~~~~~~~--~~~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 566 STGEDVLKQLGFED--SSFWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred ccHHHHHHhcCCcc--cccchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77888999888754 35788999999999999999998877653
No 11
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-71 Score=682.30 Aligned_cols=706 Identities=19% Similarity=0.243 Sum_probs=423.5
Q ss_pred ccchhhhcCCCCCccHH------HHHHHhhhccchhhhHHHHHH-------HHhCCcccccccccCCCcccCCccccchh
Q 001048 3 VIKLEKLAGIFPDPDVD------AYMKAISAEGLENSLQTDYIL-------KILGLDICADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 3 ~~~~~~~~~~~~~~~v~------~~~~~~~~~~~e~~~~v~~vl-------~~lgL~~~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
....|..+|+..|.-++ +.++.=.. ...++++++.. -...|.+..||+||+.... |||||||||
T Consensus 422 ~~~lr~~iglV~QePvlF~~tI~eNI~~G~~--dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~q-LSGGQKQRI 498 (1228)
T KOG0055|consen 422 LKWLRSQIGLVSQEPVLFATTIRENIRYGKP--DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQ-LSGGQKQRI 498 (1228)
T ss_pred hHHHHhhcCeeeechhhhcccHHHHHhcCCC--cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCC-CChHHHHHH
Confidence 34567888998885455 33332111 11122233333 3456788899999993222 999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
||||+|++||+||+|||||||||+.|+..|+++|++.++ |||+|+ ..||.++++.+|+|++|.+|++|+.|+|+++
T Consensus 499 AIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTiv--VaHRLStIrnaD~I~v~~~G~IvE~G~h~EL 574 (1228)
T KOG0055|consen 499 AIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIV--VAHRLSTIRNADKIAVMEEGKIVEQGTHDEL 574 (1228)
T ss_pred HHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEE--EeeehhhhhccCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999864 666665 3579999999999999999999999999988
Q ss_pred HHHHhhCCCCCCCCCChhHHH--HHhhCchhhhhhcccCCCCCCcCCHHHHHHHHHhcccchhhHHHH-Hhhh--ccccc
Q 001048 150 CKFFEGCGFRCPDRKGVADFL--QEVISRKDQAQYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEEL-ARSF--NKSER 224 (1174)
Q Consensus 150 ~~yf~~~G~~~p~~~n~adfl--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~--~~~~~ 224 (1174)
..-- .-.++.+ ++.....+. + +. +....++.....+.+.......... .... .+.+.
T Consensus 575 i~~~----------G~Y~~lv~~Q~~~~~~~~-~-----~~--~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~ 636 (1228)
T KOG0055|consen 575 IALG----------GIYSSLVRLQELEKAAED-E-----EE--EESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEG 636 (1228)
T ss_pred Hhcc----------chHHHHHHHHhhhhhhhc-c-----cc--ccchhhhhhhccccccccccccCCccccccccccccc
Confidence 7621 0011111 111111000 0 00 0000000000000000000000000 0000 00000
Q ss_pred c--ccccccccccccHHHHHHHHHHHHHHHhhcChHHHHHHHH-----------HHHHHHHHHHhhhccccCCcc-hhhH
Q 001048 225 H--KNAISFKKYSLTKWELLKTCATREFLLMKRNSSLYVFKST-----------QLVIIASVTMTVFLRSELAVD-IIHA 290 (1174)
Q Consensus 225 ~--~~~~~~~~~~~s~~~q~~~l~~R~~~~~~r~~~~~~~~~~-----------~~i~~~l~~g~~f~~~~~~~~-~~~~ 290 (1174)
+ ...........++ +|-++..+..+.++.+-.+ .+++++.++...+. .+.+ ....
T Consensus 637 e~~~~~~~~~~~~~s~--------~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~---~~~~~~~~~ 705 (1228)
T KOG0055|consen 637 EDPEEPVSEEDEKVSF--------WRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYP---PDDDELKRE 705 (1228)
T ss_pred cccccccccccccccH--------HHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhC---CChHHHHHH
Confidence 0 0000000112223 3444555555554443222 23334444444332 1222 2233
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHH--hhhhHHhhhhcCCCCChhhHHHHHHHHhhhHHHHHH--HHHHhhhhhccCcc
Q 001048 291 NAYLGALFYALVILIVDGFPEMNMTI--SRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLES--FVWTSLTYYIIGFS 366 (1174)
Q Consensus 291 ~~~~g~lf~~~~~~~~~~~~~~~~~~--~~~~v~~rer~~~~y~~~~y~la~~l~~lp~~~~~~--~~~~~i~Y~~~gl~ 366 (1174)
...+.++|.++....+..+.....++ ....+..|-|...| +.++.++..|++. .. +.++-.++...
T Consensus 706 ~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F---------~~ll~qd~~wFD~~~ns-g~l~~RLa~Da 775 (1228)
T KOG0055|consen 706 VRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMF---------RALLRQEVGWFDDPENS-GALSSRLATDA 775 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHcCCCcccCCCccc-hHHHHHHhcch
Confidence 44577888777666555544444444 44456677776666 7888888888883 34 88888888877
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhcccccCCCCCcceehhhhhC---HHHHH
Q 001048 367 PEVGRFIRQFLLFFAVHLTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFIIPKKSMPSWLEWGFWVC---PLTYG 443 (1174)
Q Consensus 367 ~~~~~f~~~~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~w~~~is---~~~y~ 443 (1174)
+.........+.. +.+.+++++.++.+|+..+|-+.++.+.+.++++....+-. +++.-.+ ...|.
T Consensus 776 ~~vr~~v~~rl~~---------vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~--~~~~~~~~~~~~~~~ 844 (1228)
T KOG0055|consen 776 SNVRAAVGDRLSL---------VVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQK--KFLKGFSKDDKKAYE 844 (1228)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHH
Confidence 7766655555444 33444555555566666666555444443333222110000 0111000 11122
Q ss_pred HHHHHHHhcCC---------------CccccccCCCccchhhhhhhcCCccCCcc----------hhHHH----------
Q 001048 444 EIGLTVNEFLA---------------PRWEKVISGNTTAGMQTLESRGLNFDSSF----------YWISI---------- 488 (1174)
Q Consensus 444 ~~~l~~nef~~---------------~~~~~~~~~~~~~g~~~l~~~g~~~~~~~----------~w~~i---------- 488 (1174)
-.+-+.+|-.. ..|++.+..+...+.......|+.++.+. +|.+.
T Consensus 845 ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~ 924 (1228)
T KOG0055|consen 845 EASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTF 924 (1228)
T ss_pred HHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCH
Confidence 22222222211 11111111111111111111222221111 11110
Q ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhhhhhhhccccCCCCCCCCCCCCCCCccCCCCCCCCCccccccccC
Q 001048 489 -GALIGFTMLFNAVFTLALTFLKPPGKSRTLISYEKYLELQDQKDCVGSDRDRSPTDAPLKAATGPKRGERPLAHRKMIL 567 (1174)
Q Consensus 489 -g~Li~f~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (1174)
-.+-.|..+..............++..++..+..+++.+.++.+..+.+. + .+...
T Consensus 925 ~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~--------------~---------~~~~~ 981 (1228)
T KOG0055|consen 925 EDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDS--------------T---------SGGKL 981 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCC--------------C---------CCCcc
Confidence 01111222222222333334445666777777888888887654332111 0 00011
Q ss_pred CCCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE
Q 001048 568 PFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI 647 (1174)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~ 647 (1174)
+.-...++|+||+|.++. .++.+||+|+|++|++|+.+||+|||||||||.+.+|-+.++ |.+|.|.+
T Consensus 982 ~~~~G~I~~~~V~F~YPs----------RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~G~V~I 1049 (1228)
T KOG0055|consen 982 PNVKGDIEFRNVSFAYPT----------RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDAGKVKI 1049 (1228)
T ss_pred ccceeEEEEeeeEeeCCC----------CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEE
Confidence 223457999999998763 245789999999999999999999999999999999987776 67999999
Q ss_pred CCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHH-----HHHHHHHHHHcCCCCccccccc
Q 001048 648 GGYPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTK-----AEFVNEVLQTIELDGIKDSLVG 719 (1174)
Q Consensus 648 ~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~~ 719 (1174)
||+++++ ...|+++|.|.|+|.+| +.|++|||.|+. . ..+.++. .+.+++.+ .+|++..||.+|
T Consensus 1050 Dg~dik~lnl~~LR~~i~lVsQEP~LF-~~TIrENI~YG~-~----~vs~~eIi~Aak~ANaH~FI--~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1050 DGVDIKDLNLKWLRKQIGLVSQEPVLF-NGTIRENIAYGS-E----EVSEEEIIEAAKLANAHNFI--SSLPQGYDTRVG 1121 (1228)
T ss_pred CCcccccCCHHHHHHhcceeccCchhh-cccHHHHHhccC-C----CCCHHHHHHHHHHhhhHHHH--hcCcCcccCccC
Confidence 9998765 34688999999999986 579999999982 1 1233322 22333444 378889999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 720 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
+.|. +||||||||++||||+++||+||||||.||+||+++++.|.++|++.. .|+|.|+++|+++ ..+.+|.+.++
T Consensus 1122 erG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi 1197 (1228)
T KOG0055|consen 1122 ERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVL 1197 (1228)
T ss_pred cccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEE
Confidence 9886 699999999999999999999999999999999999999999999975 4899999999986 46778888888
Q ss_pred ecCcEEEEEcCCCc
Q 001048 800 KNGGRIIYFGPLGQ 813 (1174)
Q Consensus 800 ~~~G~~v~~G~~~~ 813 (1174)
. +|++++.|+.++
T Consensus 1198 ~-~G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1198 K-NGKVVEQGTHDE 1210 (1228)
T ss_pred E-CCEEEecccHHH
Confidence 6 599999999854
No 12
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2.6e-67 Score=649.31 Aligned_cols=493 Identities=25% Similarity=0.427 Sum_probs=412.8
Q ss_pred chhhhcCCCCCcc-------HHHHHHHhh-------hccchhhhHHHHHHHHhCCcccccccccCCC-cccCCccccchh
Q 001048 5 KLEKLAGIFPDPD-------VDAYMKAIS-------AEGLENSLQTDYILKILGLDICADTMVGDPM-RRGVSGGQKKRL 69 (1174)
Q Consensus 5 ~~~~~~~~~~~~~-------v~~~~~~~~-------~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~-~rGLSGGqKkRv 69 (1174)
+.|+..|.+||++ |.+.+.... ..++++.++++++++.|||.+++||+||++. .|||||||||||
T Consensus 96 ~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRv 175 (617)
T TIGR00955 96 EMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRL 175 (617)
T ss_pred HHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHH
Confidence 3466778888864 445443211 1234566789999999999999999999863 789999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+||++|+++|+||||||||||||+.++..+++.|+++++ .|+|+|+++|||+.+++++||++++|++|+++|+||++++
T Consensus 176 sia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 176 AFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254 (617)
T ss_pred HHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHH
Confidence 999999999999999999999999999999999999986 5899999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCCCCChhHHHHHhhCchhhhhhcccCCCCCCcCCHHHHHHHHHhcccchhhHHHHHhhhccc-c--ccc
Q 001048 150 CKFFEGCGFRCPDRKGVADFLQEVISRKDQAQYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARSFNKS-E--RHK 226 (1174)
Q Consensus 150 ~~yf~~~G~~~p~~~n~adfl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~--~~~ 226 (1174)
.+||+++|++||++.||+||++++++..+..+ ..+..+.+++.+.|+++..+....++........ . ...
T Consensus 255 ~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 327 (617)
T TIGR00955 255 VPFFSDLGHPCPENYNPADFYVQVLAVIPGSE-------NESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDS 327 (617)
T ss_pred HHHHHHcCCCCCCCCChHHHHHHHhhcCcccc-------cchHHHHHHHHHHHhcchhhHHHHHHhhhhhcccccccccc
Confidence 99999999999999999999999987532211 0011123445555655433332222221111000 0 000
Q ss_pred cccccccccccHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHhhhccccCCcchhhHhhHHHHHHHHHHHHHH
Q 001048 227 NAISFKKYSLTKWELLKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYALVILIV 306 (1174)
Q Consensus 227 ~~~~~~~~~~s~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~i~~~l~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~ 306 (1174)
......++..+++.|+..+++|.++..+||+..+.+++++.+++++++|++||+.+ .+..+.+++.|++|+++....+
T Consensus 328 ~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~--~~~~~~~~~~g~lf~~~~~~~f 405 (617)
T TIGR00955 328 ENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQG--LTQKGVQNINGALFLFLTNMTF 405 (617)
T ss_pred ccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 11122356788999999999999999999999999999999999999999999754 4456778889999999888877
Q ss_pred hhh-hhHHHHHhhhhHHhhhhcCCCCChhhHHHHHHHHhhhHHHHHHHHHHhhhhhccCccccHHHHHHHHHHHHHHHHH
Q 001048 307 DGF-PEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYIIGFSPEVGRFIRQFLLFFAVHLT 385 (1174)
Q Consensus 307 ~~~-~~~~~~~~~~~v~~rer~~~~y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~l~~~l~~~~ 385 (1174)
.+. ..+..+..+|++++|||..++|++++|++|++++++|+.++.+++|.+|+|||+|+++++.+|+.|++++++..++
T Consensus 406 ~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~ 485 (617)
T TIGR00955 406 QNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANV 485 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHH
Confidence 764 5567777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhcccccCCCCCcceehhhhhCHHHHHHHHHHHHhcCCCcc-ccccC--
Q 001048 386 SISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFIIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRW-EKVIS-- 462 (1174)
Q Consensus 386 ~~~l~~~i~a~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~w~~~is~~~y~~~~l~~nef~~~~~-~~~~~-- 462 (1174)
+.++++++++++++..+|..+++++++++++|+||+++.++||+||+|++|+||++|++++++.|||.+..+ .|..+
T Consensus 486 ~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~ 565 (617)
T TIGR00955 486 ATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANT 565 (617)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988765 33221
Q ss_pred -C-CccchhhhhhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 001048 463 -G-NTTAGMQTLESRGLNFDSSFYWISIGALIGFTMLFNAVFTLALTFL 509 (1174)
Q Consensus 463 -~-~~~~g~~~l~~~g~~~~~~~~w~~ig~Li~f~~l~~~i~~~~l~~~ 509 (1174)
+ |...|..+++.+|+... +.|.++++++++.+++.+++++.+++.
T Consensus 566 ~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 566 TGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 44568999999988653 568999999999999999999887653
No 13
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=6.4e-67 Score=643.83 Aligned_cols=488 Identities=21% Similarity=0.334 Sum_probs=390.3
Q ss_pred hhcCCCCCc-------cHHHHHHHhh-------hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 8 KLAGIFPDP-------DVDAYMKAIS-------AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 8 ~~~~~~~~~-------~v~~~~~~~~-------~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
+..|.+||+ +|.+.+.... ..++|+.++++++++++||++++||+||+...++|||||||||+||+
T Consensus 140 ~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~ 219 (659)
T PLN03211 140 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAH 219 (659)
T ss_pred cceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHH
Confidence 446766664 4556554322 12334566799999999999999999999888999999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHHHH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCKFF 153 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~yf 153 (1174)
+|+++|+||+|||||||||+.++..+++.|+++++ .|+|+|+++|||+.+++++||+|++|++|+++|+|+++++.+||
T Consensus 220 aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f 298 (659)
T PLN03211 220 EMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYF 298 (659)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHH
Confidence 99999999999999999999999999999999986 58999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCCCChhHHHHHhhCchhhhhhcccCCCCCCcCCHHHHHHHHHhcccchhhHHHHHhh-hcc-cc------cc
Q 001048 154 EGCGFRCPDRKGVADFLQEVISRKDQAQYWHCQDHPYSYVSVDQFITKFKACHLGLMQDEELARS-FNK-SE------RH 225 (1174)
Q Consensus 154 ~~~G~~~p~~~n~adfl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~-~~------~~ 225 (1174)
+++||+||++.|||||++++.+.....+.....+ .....+.+.+.|++... .....+.... ... .. ..
T Consensus 299 ~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (659)
T PLN03211 299 ESVGFSPSFPMNPADFLLDLANGVCQTDGVSERE---KPNVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSAST 374 (659)
T ss_pred HHCCCCCCCCCCHHHHHHHHcCccccCCCccccc---cchHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccc
Confidence 9999999999999999999987543211000000 11122334455543211 1110110000 000 00 00
Q ss_pred cc-ccccccccccHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHhhhccccCCcchhhHhhHHHHHHHHHHHH
Q 001048 226 KN-AISFKKYSLTKWELLKTCATREFLLMKRNSSLYVFKSTQLVIIASVTMTVFLRSELAVDIIHANAYLGALFYALVIL 304 (1174)
Q Consensus 226 ~~-~~~~~~~~~s~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~i~~~l~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~ 304 (1174)
+. ......+..++++|+..|++|.++. +|++.+..+|+++.+++|+++|++||+.+ ..+.+++.|++||++++.
T Consensus 375 ~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~----~~~~~~r~g~lff~~~~~ 449 (659)
T PLN03211 375 KEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD----FRDVQDRLGLLFFISIFW 449 (659)
T ss_pred cccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHH
Confidence 00 0011224568999999999999988 78888888999999999999999999753 346788999999988776
Q ss_pred HH-hhhhhHHHHHhhhhHHhhhhcCCCCChhhHHHHHHHHhhhHHHHHHHHHHhhhhhccCccccHHHHHHHHHHHHHHH
Q 001048 305 IV-DGFPEMNMTISRLAVFYKHRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYIIGFSPEVGRFIRQFLLFFAVH 383 (1174)
Q Consensus 305 ~~-~~~~~~~~~~~~~~v~~rer~~~~y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~l~~~l~~ 383 (1174)
.+ ..++.+..+..+|++++|||.+++|++++|++|++++++|+.++.+++|++|+|||+|+++++.+|+.|++++++..
T Consensus 450 ~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~ 529 (659)
T PLN03211 450 GVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYV 529 (659)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHH
Confidence 65 45678888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhcccccCCCCCcceehhhhhCHHHHHHHHHHHHhcCCCcc-----c
Q 001048 384 LTSISLFRAIASIFRTVAVSFAIGTMAILMLLLFGGFIIPKKSMPSWLEWGFWVCPLTYGEIGLTVNEFLAPRW-----E 458 (1174)
Q Consensus 384 ~~~~~l~~~i~a~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~w~~~is~~~y~~~~l~~nef~~~~~-----~ 458 (1174)
++++++++++++++++...|+.+++++++++++|+||+++ +||+||+|++|+||++|++++++.|||.+... .
T Consensus 530 ~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~ 607 (659)
T PLN03211 530 LVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLG 607 (659)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccC
Confidence 9999999999999999999999999999999999999997 79999999999999999999999999976432 3
Q ss_pred cccCCC-ccchhhhhhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 001048 459 KVISGN-TTAGMQTLESRGLNFDSSFYWISIGALIGFTMLFNAVFTLALTFL 509 (1174)
Q Consensus 459 ~~~~~~-~~~g~~~l~~~g~~~~~~~~w~~ig~Li~f~~l~~~i~~~~l~~~ 509 (1174)
|..+.+ ...+..++....+. ....|.++++++++.+++++++++.+++.
T Consensus 608 C~~~~~~~~~~c~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 608 CSLPHGSDRASCKFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred CCCcccCCCCCCccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 322111 11112223222222 23478899999999999999988887654
No 14
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.5e-59 Score=610.89 Aligned_cols=217 Identities=27% Similarity=0.440 Sum_probs=188.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. .+++.+|+|+||+|++||++||+||||||||||+|+|+|..+ +.+|+|.++|+++
T Consensus 1937 ~L~v~nLsK~Y~-----------~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYS-----------GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEEC-----------CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 488999987542 113579999999999999999999999999999999999887 5699999999987
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 653 VQ--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
.. ...++.+||++|++.+++.+||+||+.+.+.++. ...++.++.++++++.++|.+..|+.++ .|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHH
Confidence 42 2245679999999999999999999998776642 3344455678899999999988888765 699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
||||+||+||+.+|+||+|||||+|||+.+++.+++.|++++++|+|||++||+++ ++...+|++++|. +|++++.|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~-~G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMV-KGAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999875 6667788888886 599999999
Q ss_pred CC
Q 001048 811 LG 812 (1174)
Q Consensus 811 ~~ 812 (1174)
++
T Consensus 2154 ~q 2155 (2272)
T TIGR01257 2154 IQ 2155 (2272)
T ss_pred HH
Confidence 74
No 15
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.1e-57 Score=602.95 Aligned_cols=219 Identities=22% Similarity=0.328 Sum_probs=179.8
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC------------
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG------------ 639 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~------------ 639 (1174)
..++|+||+|.++. .+++++|+|+||+|+|||.+||+||||||||||+++|.|.+++.
T Consensus 1164 g~I~f~nVsF~Y~~----------~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYIS----------RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCC----------CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 36999999997642 12357999999999999999999999999999999999987741
Q ss_pred ----------------------------------------eEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCCH
Q 001048 640 ----------------------------------------IIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 640 ----------------------------------------~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+.+|+|++||.++.+ ..+|+.++||+|++.+| +.|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccH
Confidence 158999999998754 45778899999998876 6899
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHc-------CCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEE
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI-------ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 749 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illl 749 (1174)
+|||.++.. +.+.++ ++++++.. .|++..||.+|+.|. .||||||||++|||||+++|+||||
T Consensus 1313 reNI~~g~~-----~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe~G~-~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGKE-----DATRED----VKRACKFAAIDEFIESLPNKYDTNVGPYGK-SLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCCC-----CCCHHH----HHHHHHHcCCHHHHHhCccccCCccCCCCC-cCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999998731 222222 33333333 356678999998765 5999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhcceeEEecC---cEE-EEEcCCCc
Q 001048 750 DEPTSGLDARAAATVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLVLMKNG---GRI-IYFGPLGQ 813 (1174)
Q Consensus 750 DEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~---G~~-v~~G~~~~ 813 (1174)
|||||+||+.+++.|.+.|+++. .+++|+|+++|+++ ..+.+|+++++.++ |++ ++.|+.++
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~e 1449 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEE 1449 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHH
Confidence 99999999999999999999986 35899999999874 56789999999752 785 48999754
No 16
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.8e-54 Score=575.79 Aligned_cols=214 Identities=21% Similarity=0.286 Sum_probs=178.9
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++|+||++.++ .+.+++|+|+||+|+|||.+||+|+||||||||+++|.|.++ +.+|+|.+||.+
T Consensus 1236 g~I~f~nVsf~Y~-----------~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYR-----------PELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeC-----------CCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEe
Confidence 3699999999763 122479999999999999999999999999999999999887 568999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~ 721 (1174)
+.. ..+|+.+++|||++.+|. .|+||||.++. ..+. +.+.++++..++ ++..|+.+|+.
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~-GTIreNLd~~~------~~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFS-GTVRFNLDPFN------EHND----ADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCcccc-ccHHHHhCcCC------CCCH----HHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 754 456788999999998875 69999997642 1122 234455554444 45678999886
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|. +||||||||++|||||+++|+||+||||||+||+.+++.|.+.|++.. +++|+|+++|+++ ....+|++++|.
T Consensus 1372 G~-nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd- 1446 (1622)
T PLN03130 1372 GE-NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLD- 1446 (1622)
T ss_pred CC-CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEE-
Confidence 64 599999999999999999999999999999999999999999999875 4899999999975 456689999987
Q ss_pred CcEEEEEcCCCcc
Q 001048 802 GGRIIYFGPLGQH 814 (1174)
Q Consensus 802 ~G~~v~~G~~~~~ 814 (1174)
+|++++.|++++.
T Consensus 1447 ~G~IvE~Gt~~eL 1459 (1622)
T PLN03130 1447 AGRVVEFDTPENL 1459 (1622)
T ss_pred CCEEEEeCCHHHH
Confidence 5999999998654
No 17
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.9e-54 Score=576.65 Aligned_cols=213 Identities=19% Similarity=0.272 Sum_probs=178.2
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++|+||++.++ .+.+++|+|+|++|+|||.+||+||||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1233 g~I~f~nVsf~Y~-----------~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYR-----------PGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEEC-----------CCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEE
Confidence 3699999999762 123579999999999999999999999999999999999887 568999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~ 721 (1174)
+.+ ..+|+.++||||++.+|+ .|+||||.++. ..+. +.+.++++..++ ++..|+.+|+.
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFS------EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCC------CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 754 456788999999998875 69999997531 1222 234455555544 34568889876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|. +||||||||++|||||+++|+||+||||||+||+++++.|.+.|++.. +++|+|+++|+++ ....+|++++|.
T Consensus 1369 G~-~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~- 1443 (1495)
T PLN03232 1369 GE-NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLS- 1443 (1495)
T ss_pred CC-CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEE-
Confidence 64 599999999999999999999999999999999999999999999875 4899999999975 456689999997
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 1444 ~G~ivE~Gt~~e 1455 (1495)
T PLN03232 1444 SGQVLEYDSPQE 1455 (1495)
T ss_pred CCEEEEECCHHH
Confidence 599999999854
No 18
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5e-54 Score=495.44 Aligned_cols=227 Identities=25% Similarity=0.323 Sum_probs=181.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
-++++|++..+..++... ....+...+++||||++++||++||+|+||||||||.|+|+|+.+ |.+|+|.++|.+.
T Consensus 280 ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~--P~~G~i~~~g~~~ 355 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP--PSSGSIIFDGQDL 355 (539)
T ss_pred eeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEEeCccc
Confidence 366777776554433111 001234679999999999999999999999999999999999988 5689999999772
Q ss_pred --Cc---ccccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCC
Q 001048 653 --VQ---HTFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVN 724 (1174)
Q Consensus 653 --~~---~~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~ 724 (1174)
.. ...++.+-+|+||+ .+.|.+||+++|......... ....++++++.++++.++|.. ..++. ++
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~ 428 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRY-----PH 428 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcC-----ch
Confidence 11 22445677888875 678999999999887654432 235666778999999999984 33443 45
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
+||||||||++|||||+.+|++|++|||||+||+..+..|.++|+++.++ |.|.|+||||.+ -+...||++.+|. +|
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~-~G 506 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMY-DG 506 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999876 999999999875 4556667777775 69
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++|+.||.+
T Consensus 507 ~iVE~G~~~ 515 (539)
T COG1123 507 RIVEEGPTE 515 (539)
T ss_pred eEEEeCCHH
Confidence 999999763
No 19
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.9e-51 Score=546.38 Aligned_cols=213 Identities=21% Similarity=0.234 Sum_probs=178.2
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++|+||++.++. +..++|+|+||+|+|||.+||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1283 g~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEE
Confidence 36999999997632 22469999999999999999999999999999999999887 568999999999
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------CcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-------GIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 721 (1174)
+.. ...|+.+++|||++.+|. .|+||||.... ..++ +.+.++++..++. +..|+.+|+.
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~-gTIr~NLdp~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFS-GSLRMNLDPFS------QYSD----EEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccC-ccHHHHcCccc------CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 764 356788999999998876 59999996311 1222 2345556655543 4578899876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|. .||||||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|+|+++|+++ ....+|++++|.
T Consensus 1419 G~-~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld- 1493 (1522)
T TIGR00957 1419 GE-NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLD- 1493 (1522)
T ss_pred CC-cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE-
Confidence 54 599999999999999999999999999999999999999999999865 4899999999974 466789999997
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 1494 ~G~IvE~G~~~e 1505 (1522)
T TIGR00957 1494 KGEVAEFGAPSN 1505 (1522)
T ss_pred CCEEEEECCHHH
Confidence 599999999865
No 20
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=8.8e-51 Score=541.89 Aligned_cols=213 Identities=21% Similarity=0.270 Sum_probs=178.8
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++|+||++.++ .+...+|+||||+|+|||.+||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~-----------~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYR-----------EGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeC-----------CCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 4699999999763 223469999999999999999999999999999999999987 568999999999
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------CcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-------GIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 721 (1174)
+.. ..+|+.++||||++.+|. .||+|||.... ..+. +.+.++++..++. +..|+.+|+.
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~-gTIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFD-GTVRQNVDPFL------EASS----AEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCcccc-ccHHHHhCccc------CCCH----HHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 754 457788999999998865 69999995321 2222 3456666666654 4568889876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 722 GVNGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~-p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
|. +||||||||++|||||+++ |+||+||||||+||+.+.+.|.+.|++.. +++|+|+|+|++ +....+|++++|.
T Consensus 1443 G~-nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 GS-NYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRL--HTVAQYDKIIVMD 1518 (1560)
T ss_pred cC-cCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccH--HHHHhCCEEEEEE
Confidence 64 5999999999999999996 89999999999999999999999999864 479999999987 4567899999997
Q ss_pred cCcEEEEEcCCCc
Q 001048 801 NGGRIIYFGPLGQ 813 (1174)
Q Consensus 801 ~~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 1519 -~G~VvE~Gt~~e 1530 (1560)
T PTZ00243 1519 -HGAVAEMGSPRE 1530 (1560)
T ss_pred -CCEEEEECCHHH
Confidence 599999999854
No 21
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-50 Score=496.82 Aligned_cols=228 Identities=21% Similarity=0.236 Sum_probs=183.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+...... ..-....+.+|+||||+|++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++
T Consensus 313 ~L~~~~l~~~y~~~~~~--~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGL--LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCcc--ccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 48899998865321000 0000012469999999999999999999999999999999999887 5689999999876
Q ss_pred Ccc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCC
Q 001048 653 VQH------TFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGV 723 (1174)
Q Consensus 653 ~~~------~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 723 (1174)
... .+++.++||+|++ .+++.+||.||+.+....+. .....+..+++.++++.+||. +..++.+
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~----- 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYP----- 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----
Confidence 431 2346799999986 57889999999988654321 112334456788999999995 4556654
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
++|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||++||+++ .+.+.+|++++|. +
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~-~ 539 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMY-L 539 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 469999999999999999999999999999999999999999999999875 899999999975 5667789888886 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|++++
T Consensus 540 G~iv~~g~~~~ 550 (623)
T PRK10261 540 GQIVEIGPRRA 550 (623)
T ss_pred CEEEEecCHHH
Confidence 99999998754
No 22
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.8e-50 Score=493.30 Aligned_cols=218 Identities=22% Similarity=0.331 Sum_probs=175.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEEC-Cee-
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIG-GYP- 651 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~-g~~- 651 (1174)
++++|+++.+... +.+++.+|+|+||+|++||+++|+||||||||||+|+|+|..+ +.+|+|.++ |.+
T Consensus 280 l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~ 349 (520)
T TIGR03269 280 IKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEW 349 (520)
T ss_pred EEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCcc
Confidence 7788888754210 0112469999999999999999999999999999999999876 568999996 532
Q ss_pred --CCc------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-----cccccc
Q 001048 652 --KVQ------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-----IKDSLV 718 (1174)
Q Consensus 652 --~~~------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----~~~~~~ 718 (1174)
+.. ...++.++|++|++.+++.+||+||+.+...+. ...+..+++++++++.+++.+ ..++.+
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 425 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYP 425 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCCh
Confidence 111 112456899999988889999999998764321 123334466888999999975 345544
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhccee
Q 001048 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLV 797 (1174)
Q Consensus 719 ~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~ 797 (1174)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.+|+++
T Consensus 426 -----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~ 499 (520)
T TIGR03269 426 -----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAA 499 (520)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEE
Confidence 469999999999999999999999999999999999999999999999765 899999999975 5667789888
Q ss_pred EEecCcEEEEEcCCC
Q 001048 798 LMKNGGRIIYFGPLG 812 (1174)
Q Consensus 798 ~l~~~G~~v~~G~~~ 812 (1174)
++. +|++++.|+++
T Consensus 500 ~l~-~G~i~~~g~~~ 513 (520)
T TIGR03269 500 LMR-DGKIVKIGDPE 513 (520)
T ss_pred EEE-CCEEEEECCHH
Confidence 886 58999998863
No 23
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-50 Score=485.87 Aligned_cols=223 Identities=22% Similarity=0.364 Sum_probs=178.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+.. .+++.+|+|+||+|++||+++|+||||||||||+|+|+|..++ +.+|+|.++|+++.
T Consensus 260 l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~ 328 (506)
T PRK13549 260 LEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVK 328 (506)
T ss_pred EEEecCcccccc----------ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECC
Confidence 667777653210 0134699999999999999999999999999999999998752 25899999998764
Q ss_pred cc----cccceEEEEccCC---CCCCCCCHHHHHHHHHhhccCC--CCCHHHHHHHHHHHHHHcCCC-CcccccccCCCC
Q 001048 654 QH----TFARISGYCEQND---IHSPNITVEESIVFSAWLRLST--QIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGV 723 (1174)
Q Consensus 654 ~~----~~~~~~~~v~Q~~---~~~~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 723 (1174)
.. ..++.++|++|++ .+++.+||.||+.++....... ..+..+..++++++++.+++. +..++.++
T Consensus 329 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 404 (506)
T PRK13549 329 IRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA---- 404 (506)
T ss_pred CCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccc----
Confidence 21 1245689999985 4678899999998763211110 012333446688999999996 46676654
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|
T Consensus 405 -~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~-~G 481 (506)
T PRK13549 405 -RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMH-EG 481 (506)
T ss_pred -cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEE-CC
Confidence 69999999999999999999999999999999999999999999999888999999999975 5777889988886 58
Q ss_pred EEEEEcCCCcc
Q 001048 804 RIIYFGPLGQH 814 (1174)
Q Consensus 804 ~~v~~G~~~~~ 814 (1174)
+++..|+.++.
T Consensus 482 ~i~~~~~~~~~ 492 (506)
T PRK13549 482 KLKGDLINHNL 492 (506)
T ss_pred EEEEEeccccC
Confidence 99999987653
No 24
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5e-50 Score=489.92 Aligned_cols=203 Identities=23% Similarity=0.328 Sum_probs=169.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc------cccceEEEEccCC--CC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH------TFARISGYCEQND--IH 670 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~Q~~--~~ 670 (1174)
+.+|+|+||++++||+++|+||||||||||+|+|+|..+ .+|+|.++|+++... .+++.++|++|++ .+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 569999999999999999999999999999999999874 479999999876421 1245689999986 47
Q ss_pred CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEE
Q 001048 671 SPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 749 (1174)
Q Consensus 671 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illl 749 (1174)
++.+||+||+.++...+.. .....+.+++++++++.+++. +..++.+ ..|||||||||+|||||+.+|++|||
T Consensus 376 ~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred CCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 7889999999987533211 122334456788999999996 4556654 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 750 DEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 750 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++++. +|++++.|+++
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 511 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLR-QGEVVEQGDCE 511 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEE-CCEEEEEcCHH
Confidence 9999999999999999999999875 899999999975 5667789988886 58999999863
No 25
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-50 Score=486.17 Aligned_cols=215 Identities=19% Similarity=0.333 Sum_probs=175.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++. . ..+|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 265 ~l~~~~l~~~-------------~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~ 327 (510)
T PRK09700 265 VFEVRNVTSR-------------D--RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDI 327 (510)
T ss_pred EEEEeCcccc-------------C--CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEEC
Confidence 3778888752 1 248999999999999999999999999999999999876 5689999999876
Q ss_pred Ccc----cccceEEEEccC---CCCCCCCCHHHHHHHHHhhc---cCC--C-CCHHHHHHHHHHHHHHcCCC-Ccccccc
Q 001048 653 VQH----TFARISGYCEQN---DIHSPNITVEESIVFSAWLR---LST--Q-IDSKTKAEFVNEVLQTIELD-GIKDSLV 718 (1174)
Q Consensus 653 ~~~----~~~~~~~~v~Q~---~~~~~~lTv~e~l~~~~~~~---~~~--~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~ 718 (1174)
... ..++.++|++|+ ..+++.+||+||+.++...+ ... . ......++.++++++.+++. +..++.+
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 407 (510)
T PRK09700 328 SPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI 407 (510)
T ss_pred CCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc
Confidence 431 224568999998 45788899999998753211 000 0 11223345678899999996 6677765
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeE
Q 001048 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVL 798 (1174)
Q Consensus 719 ~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 798 (1174)
+ .|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++
T Consensus 408 ~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~ 481 (510)
T PRK09700 408 T-----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAV 481 (510)
T ss_pred c-----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEE
Confidence 4 69999999999999999999999999999999999999999999999878999999999975 56778898888
Q ss_pred EecCcEEEEEcCC
Q 001048 799 MKNGGRIIYFGPL 811 (1174)
Q Consensus 799 l~~~G~~v~~G~~ 811 (1174)
+. +|++++.++.
T Consensus 482 l~-~G~i~~~~~~ 493 (510)
T PRK09700 482 FC-EGRLTQILTN 493 (510)
T ss_pred EE-CCEEEEEecC
Confidence 86 5899998876
No 26
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.6e-49 Score=482.28 Aligned_cols=205 Identities=22% Similarity=0.353 Sum_probs=170.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc----cccceEEEEccCC---CCCC
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQND---IHSP 672 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~Q~~---~~~~ 672 (1174)
.+|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++... ..++.+||++|++ .+++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 343 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVL 343 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcC
Confidence 37999999999999999999999999999999999877 5689999999876432 1345689999995 4778
Q ss_pred CCCHHHHHHHHHhhccC---CCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 001048 673 NITVEESIVFSAWLRLS---TQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ill 748 (1174)
.+||.||+.+....... ......+..++++++++.+++. +..++.++ .|||||||||+|||+|+.+|++||
T Consensus 344 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lll 418 (501)
T PRK10762 344 GMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLI 418 (501)
T ss_pred CCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEE
Confidence 89999999875321110 0112233456688999999995 56677654 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|+++..|++++
T Consensus 419 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~-~G~i~~~~~~~~ 481 (501)
T PRK10762 419 LDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMH-EGRISGEFTREQ 481 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEE-CCEEEEEecccc
Confidence 99999999999999999999999878999999999975 5677888888886 589999998765
No 27
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3.1e-49 Score=425.98 Aligned_cols=229 Identities=26% Similarity=0.373 Sum_probs=188.9
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
+-++.+|++..++.+..+-... .....++++||+++++||.++|+|.||||||||-.+|.++.++ +|+|.++|++
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~--~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~ 349 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRT--VDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQD 349 (534)
T ss_pred ceEEecceEEEEecCCcccccc--chheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCcc
Confidence 4567777776666554332211 2235799999999999999999999999999999999998763 5999999998
Q ss_pred CCcc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCC
Q 001048 652 KVQH------TFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 652 ~~~~------~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
+... ..|+.+-.|+||| .+.|.+||.|-+.-+.....+ ..+.+++.+++.++++++||+.. +.-.+ +
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~--~r~RY--P 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPA--TRNRY--P 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChh--HhhcC--C
Confidence 7532 3567789999997 577999999999998776544 45788899999999999999753 33333 4
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
++.|||||||++||||++.+|++++||||||+||-..+.+|+++|++|.++ |.+-++++||+. -+...+|++++|. +
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~-~ 502 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMR-D 502 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEe-C
Confidence 679999999999999999999999999999999999999999999999764 999999999874 3555677777775 6
Q ss_pred cEEEEEcCCC
Q 001048 803 GRIIYFGPLG 812 (1174)
Q Consensus 803 G~~v~~G~~~ 812 (1174)
|+||+.|+.+
T Consensus 503 GkiVE~G~~~ 512 (534)
T COG4172 503 GKIVEQGPTE 512 (534)
T ss_pred CEEeeeCCHH
Confidence 9999999964
No 28
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.4e-49 Score=480.90 Aligned_cols=204 Identities=20% Similarity=0.262 Sum_probs=168.1
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc----ccceEEEEccCC---CCCCC
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT----FARISGYCEQND---IHSPN 673 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~Q~~---~~~~~ 673 (1174)
+|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.... .++.++|++|++ .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 5999999999999999999999999999999999876 46899999998764321 234689999984 47788
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCC
Q 001048 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 752 (1174)
Q Consensus 674 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 752 (1174)
+|+.||+.................++.++++++.+++. +..++.++ .|||||||||+|||+|+.+|++||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 99999986431111110111222345678999999996 66677654 6999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 753 TSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 753 tsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|+|||+.++..+.+.|++++++|.|||++||+++ .+.+.+|+++++. +|+++..|.+++
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~-~G~i~~~~~~~~ 489 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMH-QGEISGALTGAA 489 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEEcccc
Confidence 9999999999999999999888999999999986 6777889988886 599999998764
No 29
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-49 Score=478.81 Aligned_cols=206 Identities=22% Similarity=0.348 Sum_probs=171.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc----cccceEEEEccCC---CCCC
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQND---IHSP 672 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~Q~~---~~~~ 672 (1174)
.+++|+||+|++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++... ..++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 48999999999999999999999999999999999886 5689999999876421 1245689999985 4788
Q ss_pred CCCHHHHHHHHHhhcc-CCC--CCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 001048 673 NITVEESIVFSAWLRL-STQ--IDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~-~~~--~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ill 748 (1174)
.+|+.||+.++..... ... ......++.++++++.+++. +..++.++ .|||||||||+|||+|+.+|++||
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEE
Confidence 8999999987532111 000 11223345678899999994 56677664 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcc
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQH 814 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~ 814 (1174)
|||||+|||+.++..++++|++++++|.|||++|||++ .+.+.+|+++++. +|++++.|++++.
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~-~g~i~~~~~~~~~ 483 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMR-EGRIAGELAREQA 483 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEE-CCEEEEEEccccC
Confidence 99999999999999999999999888999999999975 6778889988886 5899999988654
No 30
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.3e-48 Score=475.15 Aligned_cols=206 Identities=20% Similarity=0.348 Sum_probs=170.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc----cccceEEEEccCC---CCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQND---IHS 671 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~Q~~---~~~ 671 (1174)
+.+|+|+||++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|+++... ..++.++|++|+. .++
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 4699999999999999999999999999999999998762 2589999999876421 2345689999995 578
Q ss_pred CCCCHHHHHHHHHhhccC--CCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 001048 672 PNITVEESIVFSAWLRLS--TQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ill 748 (1174)
+.+||+||+.++..-... ........++.++++++.+++.+ ..++.++ .|||||||||+|||+|+.+|++|+
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lll 426 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG-----RLSGGNQQKAVLAKMLLTNPRVLI 426 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccc-----cCCHHHHHHHHHHHHHhhCCCEEE
Confidence 899999999876321110 01122334566889999999964 4566654 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|+++..++.+
T Consensus 427 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~-~G~i~~~~~~~ 488 (500)
T TIGR02633 427 LDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIG-EGKLKGDFVNH 488 (500)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEEccc
Confidence 99999999999999999999999888999999999985 6777889998886 58999887654
No 31
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-49 Score=395.21 Aligned_cols=215 Identities=27% Similarity=0.386 Sum_probs=188.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|++.++ ++.++|+|||++|++||+++|+||||||||||||||.|+.. +.+|+|.++|.++.
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 6778887653 45789999999999999999999999999999999999887 56999999997653
Q ss_pred c----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 654 Q----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 654 ~----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
. ...|+.+|+|+|+..+||++||.||+.++...- ...++++.++++.++|+.+||.+.+|..- .+||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcH
Confidence 2 346788999999999999999999999985322 24567888889999999999998888763 479999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|||||+|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.|++||+.. -..+.+|+++.++ +|++++.|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd-~G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMD-QGKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEee-CCEEEEec
Confidence 999999999999999999999999999999999999999999999999999999865 3455678887776 69999999
Q ss_pred CCC
Q 001048 810 PLG 812 (1174)
Q Consensus 810 ~~~ 812 (1174)
+++
T Consensus 219 ~p~ 221 (240)
T COG1126 219 PPE 221 (240)
T ss_pred CHH
Confidence 874
No 32
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=8.6e-47 Score=503.84 Aligned_cols=212 Identities=19% Similarity=0.286 Sum_probs=178.3
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++|+||++.++ .+.+.+|+|+||+|+|||.+||+|+||||||||+++|.|..+ .+|+|.+||.+
T Consensus 1216 g~I~f~nVs~~Y~-----------~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYT-----------EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeC-----------CCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 4699999999763 223579999999999999999999999999999999999875 37999999999
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------CcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-------GIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 721 (1174)
+.. ..+|+.++||||++.+|+ .||||||.... ..+ ++.+.++++.+++. +..|+.+|+.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~-GTIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFS-GTFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCc-cCHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCccccccccccC
Confidence 764 346788999999998876 69999995421 112 23466677776653 4568888876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|. +||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|||+++|+++ ....+|++++|.
T Consensus 1351 G~-nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~- 1425 (1490)
T TIGR01271 1351 GY-VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIE- 1425 (1490)
T ss_pred CC-cCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE-
Confidence 54 699999999999999999999999999999999999999999999864 4799999999874 456799999997
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++.+
T Consensus 1426 ~G~ivE~g~p~~ 1437 (1490)
T TIGR01271 1426 GSSVKQYDSIQK 1437 (1490)
T ss_pred CCEEEEeCCHHH
Confidence 599999999854
No 33
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-47 Score=464.78 Aligned_cols=216 Identities=15% Similarity=0.265 Sum_probs=172.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++. .+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 250 ~i~~~~l~~~---------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 312 (491)
T PRK10982 250 ILEVRNLTSL---------------RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKI 312 (491)
T ss_pred EEEEeCcccc---------------cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEEC
Confidence 3778888762 1359999999999999999999999999999999999887 5689999999876
Q ss_pred Cccc----ccceEEEEccCC---CCCCCCCHHHHHHHHHh--hccCCC-CCHHHHHHHHHHHHHHcCCC-CcccccccCC
Q 001048 653 VQHT----FARISGYCEQND---IHSPNITVEESIVFSAW--LRLSTQ-IDSKTKAEFVNEVLQTIELD-GIKDSLVGLP 721 (1174)
Q Consensus 653 ~~~~----~~~~~~~v~Q~~---~~~~~lTv~e~l~~~~~--~~~~~~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 721 (1174)
.... .++.++|++|++ .+++.+|+.+|..+... ...... ......++.++++++.+++. +..++.+
T Consensus 313 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 389 (491)
T PRK10982 313 NNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI--- 389 (491)
T ss_pred CCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc---
Confidence 4321 244589999985 36788888877433210 000001 12233345678889999885 4456655
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
.+|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.+|+++++.
T Consensus 390 --~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~- 465 (491)
T PRK10982 390 --GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMS- 465 (491)
T ss_pred --ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEE-
Confidence 369999999999999999999999999999999999999999999999888999999999975 5777889998886
Q ss_pred CcEEEEEcCCC
Q 001048 802 GGRIIYFGPLG 812 (1174)
Q Consensus 802 ~G~~v~~G~~~ 812 (1174)
+|+++..++.+
T Consensus 466 ~g~i~~~~~~~ 476 (491)
T PRK10982 466 NGLVAGIVDTK 476 (491)
T ss_pred CCEEEEEEccc
Confidence 58999888764
No 34
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.6e-47 Score=464.40 Aligned_cols=216 Identities=19% Similarity=0.305 Sum_probs=166.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|++.
T Consensus 260 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSY-------------NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEE-------------CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 48899998754 234699999999999999999999999999999999997541 1489999999764
Q ss_pred Cc----ccccceEEEEccCCCCCC--CCCHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCC
Q 001048 653 VQ----HTFARISGYCEQNDIHSP--NITVEESIVFSAWL--RLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGV 723 (1174)
Q Consensus 653 ~~----~~~~~~~~~v~Q~~~~~~--~lTv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 723 (1174)
.. ...++.++|++|++.+++ ..|+++++.++... ....... .+.+++++++++.+++.+ ..++.++
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~---- 400 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFH---- 400 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchh----
Confidence 22 123456899999875543 35777766543210 0111111 223456889999999986 6676654
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEecCCCHHHHHH-hcceeEEec
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG-RTVVCTIHQPSIDIFEA-FDDLVLMKN 801 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~~~~~-~d~~~~l~~ 801 (1174)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++| .|||++||+++ .+.+. +|+++++.
T Consensus 401 -~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~- 477 (490)
T PRK10938 401 -SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVP- 477 (490)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEec-
Confidence 699999999999999999999999999999999999999999999998775 47999999975 45553 56676665
Q ss_pred CcEEEEEcC
Q 001048 802 GGRIIYFGP 810 (1174)
Q Consensus 802 ~G~~v~~G~ 810 (1174)
+|++++.-.
T Consensus 478 ~G~i~~~~~ 486 (490)
T PRK10938 478 DGDIYRYVQ 486 (490)
T ss_pred CCceEEeec
Confidence 689887644
No 35
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.3e-45 Score=459.54 Aligned_cols=214 Identities=24% Similarity=0.323 Sum_probs=175.8
Q ss_pred ccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 571 PLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
...++|+|++..+. .+-..+|||||++|+|||.+||+|..|||||||+++|-+... +.+|+|.|||.
T Consensus 1136 ~G~I~f~~~~~RYr-----------p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgv 1202 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYR-----------PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGV 1202 (1381)
T ss_pred CCeEEEEEeEEEeC-----------CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCe
Confidence 45799999998653 234589999999999999999999999999999999998776 56899999999
Q ss_pred eCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccC
Q 001048 651 PKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGL 720 (1174)
Q Consensus 651 ~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~ 720 (1174)
++.. .+.|++++.+||||.+| ..|||.||.-.. ..++ +.+.+++|..+| ++..|+.+.+
T Consensus 1203 dI~~igL~dLRsrlsIIPQdPvLF-sGTvR~NLDPf~------e~sD----~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e 1271 (1381)
T KOG0054|consen 1203 DISKIGLHDLRSRLSIIPQDPVLF-SGTVRFNLDPFD------EYSD----DEIWEALERCQLKDVVSSLPGGLDSEVSE 1271 (1381)
T ss_pred ecccccHHHHHhcCeeeCCCCcee-cCccccccCccc------ccCH----HHHHHHHHHhChHHHHhhCCcCCCceecC
Confidence 9765 46788999999999886 579999985221 1122 234444444433 3446777877
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
.|. ++|-||||.+++||||+++.+||+|||+|+++|+++-..|++.|++-- +++|||.+.|+.+ .+ ..+|++++|+
T Consensus 1272 gG~-N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~-TV-md~DrVlVld 1347 (1381)
T KOG0054|consen 1272 GGE-NFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLN-TV-MDSDRVLVLD 1347 (1381)
T ss_pred CCc-cCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccc-hh-hhcCeEEEee
Confidence 654 699999999999999999999999999999999999999999999853 4799999999986 44 4579999987
Q ss_pred cCcEEEEEcCCCc
Q 001048 801 NGGRIIYFGPLGQ 813 (1174)
Q Consensus 801 ~~G~~v~~G~~~~ 813 (1174)
.|+++++|+|.+
T Consensus 1348 -~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1348 -AGRVVEFDSPAE 1359 (1381)
T ss_pred -CCeEeecCChHH
Confidence 599999999954
No 36
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-46 Score=391.61 Aligned_cols=220 Identities=23% Similarity=0.340 Sum_probs=189.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
+++++|+..+... ..+...+|+|||++|++||++||+|.||||||||+|++.++.. |++|+|.++|+++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 6778887654321 1123579999999999999999999999999999999999887 67999999998764
Q ss_pred c------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 Q------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
. ...|+.||+++|++.++...||.||+.|...+. ..++++.++++.++++.+||++.+|... .+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYP-----AQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCc-----hhcC
Confidence 3 245778999999999999999999999988765 3668889999999999999998877753 4799
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
|||||||+|||||+.+|+||++|||||+|||.+.+.|+++|+++.++ |.||+++||+++ -+.+.||++.+|. +|+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~-~G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLD-QGRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEee-CCEEE
Confidence 99999999999999999999999999999999999999999999765 999999999864 3555667777775 69999
Q ss_pred EEcCCCc
Q 001048 807 YFGPLGQ 813 (1174)
Q Consensus 807 ~~G~~~~ 813 (1174)
+.|+..+
T Consensus 222 E~G~v~~ 228 (339)
T COG1135 222 EEGTVSE 228 (339)
T ss_pred EeccHHH
Confidence 9999743
No 37
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=441.47 Aligned_cols=198 Identities=18% Similarity=0.265 Sum_probs=163.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|..+ |.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGF-------------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEee-------------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 58999998854 23469999999999999999999999999999999999876 56899999873
Q ss_pred CcccccceEEEEccCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHH
Q 001048 653 VQHTFARISGYCEQNDI--HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgG 729 (1174)
+.+||++|++. +.+.+|++||+.+.. .. . ..+++++++++.+++. +..++.++ .||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKSVK-----VLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCccc-----ccCHH
Confidence 35899999864 456799999986421 11 1 1234577899999984 55566554 69999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE-EE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII-YF 808 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v-~~ 808 (1174)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++||+++ .+.+.+|+++++. +|+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~-~g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEIT-PDGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEcC
Confidence 999999999999999999999999999999999999999886 359999999975 5666788888886 58887 77
Q ss_pred cCC
Q 001048 809 GPL 811 (1174)
Q Consensus 809 G~~ 811 (1174)
|++
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 775
No 38
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3e-45 Score=374.14 Aligned_cols=230 Identities=25% Similarity=0.349 Sum_probs=199.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..+++++|++. .+++.|++|||++|++||+++||||||||||||||+|.|+.+ |.+|+|.++|++
T Consensus 7 ~~I~vr~v~~~-------------fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~ 71 (263)
T COG1127 7 PLIEVRGVTKS-------------FGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGED 71 (263)
T ss_pred ceEEEeeeeee-------------cCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcc
Confidence 35899999874 356799999999999999999999999999999999999988 569999999998
Q ss_pred CCcc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCC
Q 001048 652 KVQH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVN 724 (1174)
Q Consensus 652 ~~~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~ 724 (1174)
+... ..++++|+++|+..+|..+||+||+.|..+ .....+++..++.+..-++.+||... +|.. +.
T Consensus 72 i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----Ps 144 (263)
T COG1127 72 IPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAADLY-----PS 144 (263)
T ss_pred hhccCHHHHHHHHhheeEEeeccccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----ch
Confidence 6431 356779999999999999999999999653 33456777788888888999999876 5544 45
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
+||||||||+++|||++.||++|++|||||||||.++..+-++++++.++ |.|++++|||.+ ++...+|+++++.+ |
T Consensus 145 ELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-g 222 (263)
T COG1127 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-G 222 (263)
T ss_pred hhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999876 999999999987 78899999999985 8
Q ss_pred EEEEEcCCCccc----hhhhhhhhhC
Q 001048 804 RIIYFGPLGQHS----CKVIEYFECI 825 (1174)
Q Consensus 804 ~~v~~G~~~~~~----~~~~~~f~~~ 825 (1174)
+++..|++++.. .-+.+||...
T Consensus 223 kv~~~Gt~~el~~sd~P~v~qf~~G~ 248 (263)
T COG1127 223 KVIAEGTPEELLASDDPWVRQFFNGI 248 (263)
T ss_pred EEEEeCCHHHHHhCCCHHHHHHhcCC
Confidence 999999987642 2356677755
No 39
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-45 Score=376.46 Aligned_cols=215 Identities=27% Similarity=0.395 Sum_probs=192.6
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++|+||+..+ .++.+++|+|++|++||+++++|||||||||+||+|.++.+ |++|+|++||+++.
T Consensus 2 I~~~nvsk~y-------------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRY-------------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhc-------------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 5788888643 35789999999999999999999999999999999999888 67999999999876
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC--cccccccCCCCCCCCH
Q 001048 654 Q---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG--IKDSLVGLPGVNGLST 728 (1174)
Q Consensus 654 ~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~LSg 728 (1174)
. ...|+.+|||-|+-.+||++||.||+.+-..+. ..++++.+++++++++.+||+. ..++. +++|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 357889999999999999999999999876654 4577888899999999999974 45554 468999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
||+|||.+||||+.+|+||++|||+++|||.++.++.+.++++.++ |+|+|++|||.+ +.+.++|++.++. +|+++.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEE
Confidence 9999999999999999999999999999999999999999999876 999999999987 7889999999997 699999
Q ss_pred EcCCCc
Q 001048 808 FGPLGQ 813 (1174)
Q Consensus 808 ~G~~~~ 813 (1174)
.++|++
T Consensus 217 ~~~P~~ 222 (309)
T COG1125 217 YDTPDE 222 (309)
T ss_pred eCCHHH
Confidence 999864
No 40
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.7e-43 Score=433.74 Aligned_cols=201 Identities=23% Similarity=0.341 Sum_probs=163.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|..+ |.+|+|.+++.
T Consensus 324 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 386 (556)
T PRK11819 324 VIEAENLSKSF-------------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET-- 386 (556)
T ss_pred EEEEEeEEEEE-------------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 48899998754 23579999999999999999999999999999999999877 56899998542
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHH
Q 001048 653 VQHTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGq 730 (1174)
..+||++|++ .+++.+||+||+.++..... .... ...++++++.+++.+ ..++.++ +|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKVG-----VLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCchh-----hCCHHH
Confidence 1489999986 67788999999988643211 1111 123456899999864 4566553 699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE-EEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII-YFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v-~~G 809 (1174)
||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++. | |||++||+++ .+...+|+++++.++|++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 4 8999999975 5667789988887667776 344
Q ss_pred C
Q 001048 810 P 810 (1174)
Q Consensus 810 ~ 810 (1174)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
No 41
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-45 Score=379.36 Aligned_cols=203 Identities=27% Similarity=0.402 Sum_probs=179.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.+.++++++.+ +...+|+|+|++|++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++
T Consensus 3 ~l~i~~v~~~f-------------~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSF-------------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEe-------------CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 36777777643 23689999999999999999999999999999999999988 5699999999987
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
. .....++||+|++.++|.+||+||+.++...+. .+++++++++++.++.+||.+..|.. +++|||||||
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 3 334568999999999999999999999977652 45566777899999999999998886 3579999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
||+|||||+.+|+||+||||+++||+.|+..+.+.|.++.+ .++||+++|||.+ |...+.|++++|.+
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~ 206 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSN 206 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecC
Confidence 99999999999999999999999999999999999999875 4899999999986 67788899999975
No 42
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=6.3e-44 Score=434.67 Aligned_cols=211 Identities=22% Similarity=0.263 Sum_probs=171.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. + ..|+++||++++||+++|+||||||||||+++|+|..+ |.+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 478888887431 2 24899999999999999999999999999999999887 568999885
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
..++|++|+..+.+.+||+||+.+.... .. ....++++++.+++.+..|+.++ .|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~---~~~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LG---SSYYKSEIIKPLQLERLLDKNVK-----DLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cC---hHHHHHHHHHHCCCHHHHhCCcc-----cCCHHHHH
Confidence 1479999998888899999999875321 11 12346789999999877777654 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++|||+. .+...+|+++++. |++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--Ccceeeeec
Confidence 999999999999999999999999999999999999999864 899999999975 4666788888773 588887775
Q ss_pred Ccc---chhhhhhhhhC
Q 001048 812 GQH---SCKVIEYFECI 825 (1174)
Q Consensus 812 ~~~---~~~~~~~f~~~ 825 (1174)
... ...+..|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 432 12344566665
No 43
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-44 Score=418.92 Aligned_cols=249 Identities=27% Similarity=0.408 Sum_probs=202.4
Q ss_pred CCccccchhhhhhhhccccCCCCCCCCCCCCCCCccCCCCCCCCCccccccccCC-CCccEEEEeceEEEEeeCCccccc
Q 001048 514 KSRTLISYEKYLELQDQKDCVGSDRDRSPTDAPLKAATGPKRGERPLAHRKMILP-FEPLTVTFEDLRYYVDIPSAMRKN 592 (1174)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 592 (1174)
..+++-+.+|+++..+++|.....- . ..| .-...|+|+||+|.++.+
T Consensus 431 lmkgvGAs~rvFel~dr~P~i~~~G------------------~--------~~p~~~~G~IeF~~VsFaYP~R------ 478 (716)
T KOG0058|consen 431 LMKGVGASERVFELMDRKPRIPLTG------------------T--------LAPDHLQGVIEFEDVSFAYPTR------ 478 (716)
T ss_pred HHHhcchHHHHHHHhccCCCCCCCC------------------c--------cccccccceEEEEEeeeecCCC------
Confidence 3556667788999888765442210 0 011 123469999999987643
Q ss_pred ccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCC
Q 001048 593 GFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDI 669 (1174)
Q Consensus 593 ~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~ 669 (1174)
++.++|||+||+|+|||++||+||||+||||+.++|...++ |.+|+|.+||+|+.+ ..+++.+|+|.|||.
T Consensus 479 ----p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPv 552 (716)
T KOG0058|consen 479 ----PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVPISDINHKYLRRKIGLVGQEPV 552 (716)
T ss_pred ----CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCeehhhcCHHHHHHHeeeeeccce
Confidence 35689999999999999999999999999999999998877 679999999999765 346789999999999
Q ss_pred CCCCCCHHHHHHHHHhhccCCCCCHHH-----HHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCC
Q 001048 670 HSPNITVEESIVFSAWLRLSTQIDSKT-----KAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANP 744 (1174)
Q Consensus 670 ~~~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p 744 (1174)
+| .-||+|||.|+.. ..+.++ +.+.+++.+. ++++..||.+|+.|. +||||||||++|||||++||
T Consensus 553 LF-s~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~-qLSGGQKQRIAIARALlr~P 623 (716)
T KOG0058|consen 553 LF-SGSIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGS-QLSGGQKQRIAIARALLRNP 623 (716)
T ss_pred ee-cccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccccCCccc-cccchHHHHHHHHHHHhcCC
Confidence 86 5699999999854 222222 2233444554 567889999999876 59999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 745 SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 745 ~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
+||||||.||+||++++..|.+.|.++.+ ++|||+|.|+++ ..+.+|+++++. +|++++.|+.++
T Consensus 624 ~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~-~G~V~E~G~h~e 688 (716)
T KOG0058|consen 624 RVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVID-KGRVVEMGTHDE 688 (716)
T ss_pred CEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEc-CCeEEecccHHH
Confidence 99999999999999999999999999876 699999999875 578889888886 599999998755
No 44
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=5.9e-43 Score=429.02 Aligned_cols=201 Identities=23% Similarity=0.337 Sum_probs=162.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|..+ |.+|+|.+++.
T Consensus 322 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGF-------------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEE-------------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--
Confidence 48899998754 23579999999999999999999999999999999999876 56899998542
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHH
Q 001048 653 VQHTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGq 730 (1174)
..+||++|++ .+++.+||.||+.++..... .... ...++++++.+++.+ ..++.++ .|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKVG-----QLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCchh-----hCCHHH
Confidence 1589999986 47788999999988643211 1111 223557899999864 4566543 699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE-EEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII-YFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v-~~G 809 (1174)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. + |||++||+++ .+...+|+++++.++|+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999873 3 8999999975 5667789988887556776 334
Q ss_pred C
Q 001048 810 P 810 (1174)
Q Consensus 810 ~ 810 (1174)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
No 45
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-44 Score=379.57 Aligned_cols=219 Identities=27% Similarity=0.441 Sum_probs=187.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. +.++|+||||++++||+++|+||||||||||+|+|.|..+ |.+|+|.++|++.
T Consensus 4 ~i~v~nl~v~y~-------------~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG-------------NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC-------------CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 589999998652 2269999999999999999999999999999999999887 5799999999987
Q ss_pred CcccccceEEEEccCCC--CCCCCCHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 653 VQHTFARISGYCEQNDI--HSPNITVEESIVFSAWLRLST-QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~--~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
.....+..+|||||... .-+..||+|.+..+...+..- ....++.++.++++|+.+|+.+.+|+.+| .||||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGG 143 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGG 143 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcH
Confidence 65444578999999642 224589999999874332210 11123346789999999999999999987 59999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|+|||.|||||+++|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.+.+|++++|. +++++.|
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G 220 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASG 220 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEecc
Confidence 999999999999999999999999999999999999999999988999999999997 6889999999995 6899999
Q ss_pred CCCcc
Q 001048 810 PLGQH 814 (1174)
Q Consensus 810 ~~~~~ 814 (1174)
++++.
T Consensus 221 ~~~~~ 225 (254)
T COG1121 221 PPEEV 225 (254)
T ss_pred Chhhc
Confidence 99764
No 46
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.5e-44 Score=372.99 Aligned_cols=193 Identities=27% Similarity=0.452 Sum_probs=168.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc------c-ccceEEEEccCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH------T-FARISGYCEQNDIHS 671 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~-~~~~~~~v~Q~~~~~ 671 (1174)
..+|+++|++|++||+++|+|||||||||||++|.|... |++|.|.++|.++... . +++.+|||+|+..++
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 579999999999999999999999999999999999887 5799999999876531 1 345699999999999
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCccc-ccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEe
Q 001048 672 PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD-SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 750 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlD 750 (1174)
|++||+||+.+...+.. .....+.++++++++.+||.+..+ +.. .+|||||||||+|||||+.+|++++.|
T Consensus 96 ~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKKKP-----SELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccCCc-----hhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 99999999998765542 222256677889999999986655 443 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 751 EPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 751 EPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|||.+||+.+++.|+++++++.++ |+|+|++|||+ ++...+|+++.+.+ |+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD-GK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeC-Ce
Confidence 999999999999999999999865 99999999986 67899999999975 76
No 47
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.9e-44 Score=382.58 Aligned_cols=220 Identities=27% Similarity=0.411 Sum_probs=189.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++.+|+++.+ +++.+|+|+||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|+++
T Consensus 2 ~L~~~~ls~~y-------------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGY-------------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEE-------------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 37788998854 35789999999999999999999999999999999999887 5689999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLST-QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.. +.+.+.++||||.....+.+||+|-+.++..-+... ....++.++.++++++.+++.+.+++.+. .|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccCh
Confidence 54 456788999999988888999999999885322111 11233445578999999999999999875 6999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
||||||.|||||+++|++|+||||||.||...+.+++++++++++ +|+|+|+++||++ .....+|++++|. +|+++.
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk-~G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLK-DGKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCeEEe
Confidence 999999999999999999999999999999999999999999985 5999999999987 4667788888886 699999
Q ss_pred EcCCCcc
Q 001048 808 FGPLGQH 814 (1174)
Q Consensus 808 ~G~~~~~ 814 (1174)
.|++++.
T Consensus 220 ~G~p~ev 226 (258)
T COG1120 220 QGTPEEV 226 (258)
T ss_pred ecCcchh
Confidence 9998753
No 48
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-43 Score=434.64 Aligned_cols=198 Identities=23% Similarity=0.358 Sum_probs=161.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||+|++||+++|+||||||||||||+|+|..+ |.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y-------------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGY-------------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEe-------------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 58899998754 23579999999999999999999999999999999999887 56899999641
Q ss_pred CcccccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHH
Q 001048 653 VQHTFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgG 729 (1174)
..+||++|+. .+.+..|+.+++.- .. .....+.+.++++.+++.. ..++.++ .||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEETR-----RFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCchh-----hCCHH
Confidence 2579999974 34456788777531 11 1122456788999999963 5566654 69999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE-EE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII-YF 808 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v-~~ 808 (1174)
|||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||++|||+. .+...+|+++++. +|+++ +.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~-~G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVH-DGKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEcC
Confidence 999999999999999999999999999999999999999987 34 9999999975 5667788888886 58987 78
Q ss_pred cCCC
Q 001048 809 GPLG 812 (1174)
Q Consensus 809 G~~~ 812 (1174)
|+.+
T Consensus 510 g~~~ 513 (638)
T PRK10636 510 GDLE 513 (638)
T ss_pred CCHH
Confidence 8764
No 49
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.2e-43 Score=347.98 Aligned_cols=213 Identities=25% Similarity=0.355 Sum_probs=185.5
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++|+||+..+ ..+ +++|+||||+|++||++-|+||||||||||||+|.+... |++|+|.++|+++.
T Consensus 2 I~f~~V~k~Y-----------~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAY-----------PGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhc-----------CCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 5788887643 233 679999999999999999999999999999999999877 67999999999875
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 QH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. -.||.||+|+||..++++.||+||+.|+.... +.+..+.++++.++|+.+||.+..+.. +.+||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 32 25788999999999999999999999987665 445677888999999999999877765 34799
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||||+||||++.+|++|+.||||.+|||..+.+|++++.++.+.|.||+++||+. ++.+...+.++..++|+++.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~--~lv~~~~~rvl~l~~Grl~~ 217 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL--ELVNRMRHRVLALEDGRLVR 217 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH--HHHHhccCcEEEEeCCEEEe
Confidence 9999999999999999999999999999999999999999999998999999999974 67777766666666799987
Q ss_pred EcC
Q 001048 808 FGP 810 (1174)
Q Consensus 808 ~G~ 810 (1174)
...
T Consensus 218 d~~ 220 (223)
T COG2884 218 DES 220 (223)
T ss_pred ccc
Confidence 654
No 50
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-44 Score=364.31 Aligned_cols=222 Identities=27% Similarity=0.367 Sum_probs=188.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||+..++ +++++|+|||++|++||+++|+||||||||||||+|+|+.+ +++|+|.+||.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 578899887542 35789999999999999999999999999999999999876 6799999999775
Q ss_pred Cc------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccC-----CCCCHHHHHHHHHHHHHHcCCCCcccccccCC
Q 001048 653 VQ------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLS-----TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP 721 (1174)
Q Consensus 653 ~~------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 721 (1174)
.. +.+++.+||++|++.+.+.+||.+|+..+..-+.+ -....++.++.+-+.|+.+|+.+.+-.+.+
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-- 146 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-- 146 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc--
Confidence 43 24567899999999999999999999987532211 112223445667788999999988777765
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
.|||||+|||+|||||+++|++++.|||+++|||.+++.|++.|+++.+ +|.|||++.|+.+ -..++|||++-+.
T Consensus 147 ---~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~ 222 (258)
T COG3638 147 ---TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGLK 222 (258)
T ss_pred ---cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEec
Confidence 5999999999999999999999999999999999999999999999986 4999999999986 4667889999887
Q ss_pred cCcEEEEEcCCCccc
Q 001048 801 NGGRIIYFGPLGQHS 815 (1174)
Q Consensus 801 ~~G~~v~~G~~~~~~ 815 (1174)
+|+++|.||+++..
T Consensus 223 -~G~ivfDg~~~el~ 236 (258)
T COG3638 223 -AGRIVFDGPASELT 236 (258)
T ss_pred -CCcEEEeCChhhhh
Confidence 59999999997643
No 51
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.9e-42 Score=429.91 Aligned_cols=201 Identities=23% Similarity=0.321 Sum_probs=161.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+|+||+|++||+++|+|||||||||||++|+|..+ |.+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQI-------------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEE-------------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 48899998754 23579999999999999999999999999999999999876 56899998 4321
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHH
Q 001048 653 VQHTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGq 730 (1174)
.+||++|+. .+++.+||.||+.++.... ... .....+.++++.+++. +..++.++ .|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPVK-----ALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChhh-----hCCHHH
Confidence 489999975 5788999999998753211 011 1134567888888885 34566654 699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE-Ec
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY-FG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~-~G 809 (1174)
||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++||+.+ .+...+|+++++.++|++.. .|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999876 459999999964 56677888888863577765 44
Q ss_pred C
Q 001048 810 P 810 (1174)
Q Consensus 810 ~ 810 (1174)
+
T Consensus 522 ~ 522 (635)
T PRK11147 522 G 522 (635)
T ss_pred C
Confidence 4
No 52
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-43 Score=354.06 Aligned_cols=219 Identities=27% Similarity=0.391 Sum_probs=185.8
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCC---CCCeEEEEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK---TGGIIEGDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~---~~~~~~G~i~~~ 648 (1174)
..++.+|+++++ +++.+|+|||+.|++++++|++|||||||||||+++.... ++...+|+|.++
T Consensus 6 ~~~~~~~l~~yY-------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~ 72 (253)
T COG1117 6 PAIEVRDLNLYY-------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLD 72 (253)
T ss_pred ceeEecceeEEE-------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEEC
Confidence 357888998765 3578999999999999999999999999999999999843 334678999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCC
Q 001048 649 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPG 722 (1174)
Q Consensus 649 g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 722 (1174)
|+++.. ...|+.+|+|+|.|.-|| +|++||+.|+.++.... .++.++.|+..|+...|. +..|++-.++
T Consensus 73 g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~---~~~ldeiVe~sLk~AaLWdEVKDrL~~sa- 147 (253)
T COG1117 73 GKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIK---DKELDEIVESSLKKAALWDEVKDRLHKSA- 147 (253)
T ss_pred CeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccc---hHHHHHHHHHHHHHhHhHHHhHHHhhCCc-
Confidence 998744 246888999999999988 99999999998776332 266778899999888875 4455554432
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
.+||||||||++|||||+.+|+|||||||||+|||.+..+|.+++.+|++ .-|||++||.+. ...+..|....+. .
T Consensus 148 -~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~-~ 223 (253)
T COG1117 148 -LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFY-L 223 (253)
T ss_pred -cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhc-c
Confidence 46999999999999999999999999999999999999999999999984 799999999864 5566778888887 5
Q ss_pred cEEEEEcCCC
Q 001048 803 GRIIYFGPLG 812 (1174)
Q Consensus 803 G~~v~~G~~~ 812 (1174)
|++|++|+++
T Consensus 224 G~LvE~g~T~ 233 (253)
T COG1117 224 GELVEFGPTD 233 (253)
T ss_pred cEEEEEcCHH
Confidence 8999999974
No 53
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6.1e-39 Score=421.96 Aligned_cols=461 Identities=17% Similarity=0.183 Sum_probs=280.4
Q ss_pred HHHHhhhhHHhhhhcCCC-CChhhHHHHHHHHhhhHHHHHHHHHHhhhhhccCccccHHHHHHHHHHHHHHHHHHHHHHH
Q 001048 313 NMTISRLAVFYKHRDLCF-YPAWAYAIPASILKVPLSLLESFVWTSLTYYIIGFSPEVGRFIRQFLLFFAVHLTSISLFR 391 (1174)
Q Consensus 313 ~~~~~~~~v~~rer~~~~-y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~l~~~l~~~~~~~l~~ 391 (1174)
.....|+..-+||...-+ -+.+.|+++..+..+.+.++..++..++.. .+-.-....++..++.+++...+.+.+..
T Consensus 672 ~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~--~~~~~~~s~~~~lfl~~~~y~~s~I~~~f 749 (2272)
T TIGR01257 672 KSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIM--HGRILHYSDPFILFLFLLAFSTATIMQCF 749 (2272)
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCceeecCChHHHHHHHHHHHHHHHHHHH
Confidence 344455555566643322 357888888888776555554443333221 12112223445556666777788888999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHhhc-ccccCCCCCcceehhh-hhCHHHHHHHHHHHH--hcC--CCccccccCCCc
Q 001048 392 AIASIFRTVAVSFAIGTMAILMLLLFGG-FIIPKKSMPSWLEWGF-WVCPLTYGEIGLTVN--EFL--APRWEKVISGNT 465 (1174)
Q Consensus 392 ~i~a~~~~~~~A~~~~~~~~~~~~l~~G-f~i~~~~ip~~~~w~~-~is~~~y~~~~l~~n--ef~--~~~~~~~~~~~~ 465 (1174)
++++++....+|..+++++.....+-.. ++...+.++....|.. -++|..+++...... |-. +..|...... .
T Consensus 750 liS~fFska~~A~~~~~li~f~~~lp~~~~~~~~~~~~~~~~~~~sL~sp~af~~g~~~i~~~e~~~~G~~w~n~~~~-~ 828 (2272)
T TIGR01257 750 LLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSNIGNS-P 828 (2272)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHhcCHHHHHHHHHHHHHHhhhCCCccccccccc-c
Confidence 9999999999988888776544332211 1223345555555543 456766665433322 221 1122211000 0
Q ss_pred cchhhhhhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcccc-chhhhhhhhccccCCCCCC-CCCC
Q 001048 466 TAGMQTLESRGLNFDSSFYWISIGALIGFTMLFNAVFTLALTFLKPP-GKSRTLI-SYEKYLELQDQKDCVGSDR-DRSP 542 (1174)
Q Consensus 466 ~~g~~~l~~~g~~~~~~~~w~~ig~Li~f~~l~~~i~~~~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~ 542 (1174)
.. .+...+...+++++.-.+++.++..+.-...... +..+.-- ...+..+............ ....
T Consensus 829 ----------~~-~d~~s~~~~~~ml~~d~~lY~lL~~Yld~V~PgeyG~~kpw~F~~~~syW~~~~~~~~~~~~~~~~~ 897 (2272)
T TIGR01257 829 ----------LE-GDEFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGGEGCSTREERALEKT 897 (2272)
T ss_pred ----------cC-CCCccHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCcccccchhhhcCCcccccccccccccc
Confidence 00 0000111222233332333333333322221110 1011000 0000000000000000000 0000
Q ss_pred CCCCCc-cCCCCCCCC-CccccccccCCCCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecC
Q 001048 543 TDAPLK-AATGPKRGE-RPLAHRKMILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGV 620 (1174)
Q Consensus 543 ~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~ 620 (1174)
...... ......++. ....+. ..+.....++++|+++.+. .+++.+|+|+|+++++||+++|+||
T Consensus 898 ~~~~~~~~~~~~~~~~~~~~~E~--~~~~~~~~L~I~nLsK~y~-----------~~~k~aL~~lsl~I~~Gei~aLLG~ 964 (2272)
T TIGR01257 898 EPLTEEMEDPEHPEGINDSFFER--ELPGLVPGVCVKNLVKIFE-----------PSGRPAVDRLNITFYENQITAFLGH 964 (2272)
T ss_pred ccccccccccccccccccccccc--ccCCCCceEEEEeEEEEec-----------CCCceEEEeeEEEEcCCcEEEEECC
Confidence 000000 000000000 000000 0111234689999988542 1235799999999999999999999
Q ss_pred CCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHH
Q 001048 621 SGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKA 698 (1174)
Q Consensus 621 sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~ 698 (1174)
||||||||+|+|+|..+ |.+|+|.++|+++.. ...++.+||++|++.+++.+||+||+.+.++++. ...++.+
T Consensus 965 NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~ 1039 (2272)
T TIGR01257 965 NGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQ 1039 (2272)
T ss_pred CCChHHHHHHHHhcCCC--CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHH
Confidence 99999999999999987 569999999998743 2345679999999999999999999999876542 2334455
Q ss_pred HHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 001048 699 EFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTV 778 (1174)
Q Consensus 699 ~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 778 (1174)
++++++++.+||.+..|+.++ +|||||||||+||+||+.+|+||+|||||+|||+.+++.++++|++++ +|+||
T Consensus 1040 ~~v~~lL~~vgL~~~~~~~~~-----~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TI 1113 (2272)
T TIGR01257 1040 LEMEAMLEDTGLHHKRNEEAQ-----DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTI 1113 (2272)
T ss_pred HHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEE
Confidence 678999999999988887764 699999999999999999999999999999999999999999999995 59999
Q ss_pred EEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 779 VCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 779 i~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|++||+++ ++...+|+++++. +|+++..|++..
T Consensus 1114 IltTHdmd-ea~~laDrI~iL~-~GkL~~~Gs~~~ 1146 (2272)
T TIGR01257 1114 IMSTHHMD-EADLLGDRIAIIS-QGRLYCSGTPLF 1146 (2272)
T ss_pred EEEECCHH-HHHHhCCEEEEEE-CCEEEEecCHHH
Confidence 99999975 5666788888887 599999998743
No 54
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-43 Score=391.79 Aligned_cols=217 Identities=28% Similarity=0.400 Sum_probs=194.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|++..+ ++..+|+|+|++|++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++
T Consensus 3 ~i~l~~v~K~y-------------g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSF-------------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEc-------------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 47888887643 22229999999999999999999999999999999999988 6799999999998
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQ-HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~-~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
+. ...+|.+++|+|+..++|++||+||+.|+.+.+ ..++++.+++++++.+.++|++..|++. ++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhH
Confidence 76 345678999999999999999999999998775 4467788899999999999999999874 47999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||+|||||+++|++++||||.|+||+..+..+...|+++.++ |.|+|.+|||.. +...++|+++++. +|++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999999875 899999999974 7888899999997 699999999
Q ss_pred CCcc
Q 001048 811 LGQH 814 (1174)
Q Consensus 811 ~~~~ 814 (1174)
+.+.
T Consensus 218 p~el 221 (338)
T COG3839 218 PLEL 221 (338)
T ss_pred hHHH
Confidence 8654
No 55
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.4e-43 Score=394.42 Aligned_cols=215 Identities=28% Similarity=0.456 Sum_probs=189.0
Q ss_pred EEEEeceEEEEeeCCcccccccccc-cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQT-RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
.++++|++..+ + ++.+|+||||++++||++||+||||||||||+|+|+|... |++|+|.++|.+
T Consensus 4 ~i~~~~l~k~~-------------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~ 68 (293)
T COG1131 4 VIEVRNLTKKY-------------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYD 68 (293)
T ss_pred eeeecceEEEe-------------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEe
Confidence 36677777643 3 4689999999999999999999999999999999999987 579999999988
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 652 KVQ--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 652 ~~~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
... ...++.+||++|++.+++.+||+|||.|.+.++.... ....++++++++.++|.+..++++ ++||+|
T Consensus 69 ~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G 140 (293)
T COG1131 69 VVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKV-----RTLSGG 140 (293)
T ss_pred CccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcch-----hhcCHH
Confidence 754 3567789999999999999999999999998875432 445678999999999998555555 469999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG-RTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||++||+||+++|++|||||||+|||+.++..+.+.|++++++| +||+++||+++ ++...||+++++. +|++++.
T Consensus 141 ~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~-~G~~~~~ 218 (293)
T COG1131 141 MKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILN-DGKIIAE 218 (293)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEe-CCEEEEe
Confidence 9999999999999999999999999999999999999999999886 89999999986 7777788888886 5999999
Q ss_pred cCCC
Q 001048 809 GPLG 812 (1174)
Q Consensus 809 G~~~ 812 (1174)
|+++
T Consensus 219 g~~~ 222 (293)
T COG1131 219 GTPE 222 (293)
T ss_pred CCHH
Confidence 9764
No 56
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-43 Score=374.04 Aligned_cols=208 Identities=30% Similarity=0.479 Sum_probs=186.4
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe---eCCc-ccccceEEEEccCCCCCC
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY---PKVQ-HTFARISGYCEQNDIHSP 672 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~-~~~~~~~~~v~Q~~~~~~ 672 (1174)
+...+++|||++|+.||++||+|||||||||||++|+|+.. |..|.|.+||+ +... ....|.+|||+|+..+|+
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 35679999999999999999999999999999999999988 56999999999 5443 334578999999999999
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCC
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 752 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 752 (1174)
++||.|||.|+.+.+ ....++.+.+.+++++|+.+.|++..+.. +.+|||||||||++||||+.+|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998776 23345667788999999999999998876 358999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcc
Q 001048 753 TSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQH 814 (1174)
Q Consensus 753 tsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~ 814 (1174)
+++||..-+.++.+.|+++.++ |.|++++|||+. +..+.+|++++|. +|+|...||+++.
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~-~G~Ieqvg~p~ev 225 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLN-QGRIEQVGPPDEV 225 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEec-CCeeeeeCCHHHH
Confidence 9999999999999999999876 999999999986 8899999999997 5999999998653
No 57
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=5.9e-42 Score=424.24 Aligned_cols=200 Identities=18% Similarity=0.293 Sum_probs=157.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. +++.+|+|+||+|++||+++|+||||||||||||+|+|..+ |.+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 588999988542 12469999999999999999999999999999999999877 56899998652
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqr 731 (1174)
..+||++|+. .+.+++.+|.........+ ... .+.++++++.+++.+ ..+..+ ..||||||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPM-----YTLSGGQK 633 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCc-----cccCHHHH
Confidence 3589999975 3456676664432111111 111 345778999999973 445544 46999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE-EEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII-YFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v-~~G~ 810 (1174)
|||+|||+|+.+|++|||||||+|||+.+...+.+.|++. +| |||++||++. .+...+|+++++. +|+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~-~G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVS-EGKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCCC
Confidence 9999999999999999999999999999999998888764 34 9999999975 5666788888886 58988 6776
Q ss_pred C
Q 001048 811 L 811 (1174)
Q Consensus 811 ~ 811 (1174)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 4
No 58
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-43 Score=392.27 Aligned_cols=218 Identities=27% Similarity=0.419 Sum_probs=194.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|++..+ ++..+|+|+|++|++||+++|+|||||||||||++|+|... |++|+|.++|+++
T Consensus 5 ~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 58888888643 35789999999999999999999999999999999999988 6799999999998
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
... ..+|.+|+|+|+-.+||++||+||+.|+.+++ ....+++.+++++++++.++|++.+++.. .+||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHH
Confidence 763 45678999999999999999999999998743 23345667889999999999999888875 47999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||++||||+.+|++|+||||.|+||..-+.++...|+++.++ |.|.|++|||.. +...+.|++++|. +|++.-.|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~-~G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMN-DGRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEcc-CCceeecCC
Confidence 9999999999999999999999999999999999999999765 999999999975 7788889998886 599999999
Q ss_pred CCcc
Q 001048 811 LGQH 814 (1174)
Q Consensus 811 ~~~~ 814 (1174)
+++.
T Consensus 221 P~ei 224 (352)
T COG3842 221 PEEI 224 (352)
T ss_pred HHHH
Confidence 8653
No 59
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-43 Score=350.53 Aligned_cols=203 Identities=27% Similarity=0.403 Sum_probs=185.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
.++++||||+++.||+++|+|||||||||+|++|+++.. |++|.|++||.+... ...++.+|.++.+..++..+|+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 459999999999999999999999999999999999988 569999999988643 3467889999988889999999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
+|||.|.+++. +....+.+++.+++.+.++|.++.|+.+| ++|.|+||||+|||||+++|++++||||||||
T Consensus 93 rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 93 RENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 99999999876 45667778899999999999999999987 59999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 757 DARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|..+.+.+.+.+++++++|++||++||... ++...||+++++. .|++|+.|++++
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh-~Gevv~~gs~~~ 219 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLH-KGEVVLEGSIEA 219 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEe-cCcEEEcCCHHH
Confidence 999999999999999988999999999875 7777899999987 599999999854
No 60
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-42 Score=426.69 Aligned_cols=220 Identities=27% Similarity=0.392 Sum_probs=183.3
Q ss_pred CccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECC
Q 001048 570 EPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG 649 (1174)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 649 (1174)
....++|+||+|+++.+ ++.++|+|+||+|++||.+||+|||||||||++++|.+.++ |.+|+|.+||
T Consensus 347 ~~g~ief~nV~FsYPsR----------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG 414 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSR----------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDG 414 (1228)
T ss_pred cccceEEEEEEecCCCC----------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcC
Confidence 34679999999977532 35689999999999999999999999999999999999887 6799999999
Q ss_pred eeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHH-----HHHHHHHHHcCCCCcccccccCC
Q 001048 650 YPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKA-----EFVNEVLQTIELDGIKDSLVGLP 721 (1174)
Q Consensus 650 ~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~l~~~~~~~~~~~ 721 (1174)
.++.. +..|..+|.|.|+|.+ +..||+|||.|+.. +.+.++.. ..+.+.+ ..|.+..||.+|+.
T Consensus 415 ~di~~~~~~~lr~~iglV~QePvl-F~~tI~eNI~~G~~-----dat~~~i~~a~k~ana~~fi--~~lp~g~~T~vge~ 486 (1228)
T KOG0055|consen 415 EDIRNLNLKWLRSQIGLVSQEPVL-FATTIRENIRYGKP-----DATREEIEEAAKAANAHDFI--LKLPDGYDTLVGER 486 (1228)
T ss_pred ccchhcchHHHHhhcCeeeechhh-hcccHHHHHhcCCC-----cccHHHHHHHHHHccHHHHH--HhhHHhhcccccCC
Confidence 98754 3467789999999966 56899999998732 22222221 1122333 35677889999998
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|+ +||||||||++|||||++||+|||||||||+||+.+++.|+++|+++. +|+|.|+++|+++ ++ +.+|+++++.
T Consensus 487 g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tI-rnaD~I~v~~- 561 (1228)
T KOG0055|consen 487 GV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TI-RNADKIAVME- 561 (1228)
T ss_pred CC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hh-hccCEEEEEE-
Confidence 87 499999999999999999999999999999999999999999999876 4999999999986 45 5588888886
Q ss_pred CcEEEEEcCCCcc
Q 001048 802 GGRIIYFGPLGQH 814 (1174)
Q Consensus 802 ~G~~v~~G~~~~~ 814 (1174)
+|++|+.|++++.
T Consensus 562 ~G~IvE~G~h~EL 574 (1228)
T KOG0055|consen 562 EGKIVEQGTHDEL 574 (1228)
T ss_pred CCEEEEecCHHHH
Confidence 5999999998764
No 61
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.6e-41 Score=414.35 Aligned_cols=277 Identities=25% Similarity=0.378 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-CCCccccchhhhhhhhccccCCCCCCCCCCCCCCCccCCCCCCCCCccccccc
Q 001048 487 SIGALIGFTMLFNAVFTLALTFLKPP-GKSRTLISYEKYLELQDQKDCVGSDRDRSPTDAPLKAATGPKRGERPLAHRKM 565 (1174)
Q Consensus 487 ~ig~Li~f~~l~~~i~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (1174)
.+|.+++|..+...+..++..+.... +.++...+.+|+.++.+.+++...+. . ..
T Consensus 408 TlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~-----------------~-------~~ 463 (709)
T COG2274 408 TLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDK-----------------T-------LI 463 (709)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc-----------------c-------cc
Confidence 35777777777777766665544332 22344456667776665432111000 0 01
Q ss_pred cCCCCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEE
Q 001048 566 ILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDI 645 (1174)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i 645 (1174)
..+.....++++|++|.+. ..+..+|+|+|++|+|||.+||+|+||||||||+|+|+|+++ |.+|+|
T Consensus 464 ~~~~~~g~I~~~nvsf~y~-----------~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I 530 (709)
T COG2274 464 HLPKLQGEIEFENVSFRYG-----------PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRI 530 (709)
T ss_pred cccccCceEEEEEEEEEeC-----------CCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceE
Confidence 1233456799999999764 233479999999999999999999999999999999999988 679999
Q ss_pred EECCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHH-----HHHHHHHHHcCCCCccccc
Q 001048 646 RIGGYPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKA-----EFVNEVLQTIELDGIKDSL 717 (1174)
Q Consensus 646 ~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~l~~~~~~~ 717 (1174)
++||.++.. ...|+.+|||+||+.+ ++.|++||+.++.. ..+.++.. ..+++.++ .++...||.
T Consensus 531 ~~dg~dl~~i~~~~lR~~ig~V~Q~~~L-f~gSI~eNi~l~~p-----~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~ 602 (709)
T COG2274 531 LLDGVDLNDIDLASLRRQVGYVLQDPFL-FSGSIRENIALGNP-----EATDEEIIEAAQLAGAHEFIE--NLPMGYDTP 602 (709)
T ss_pred EECCEeHHhcCHHHHHhheeEEcccchh-hcCcHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHH--hcccccccc
Confidence 999998754 4678999999998876 56799999998642 22222211 12233333 456778999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhccee
Q 001048 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLV 797 (1174)
Q Consensus 718 ~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~ 797 (1174)
+|+.|. +||||||||++|||||+++|+||+||||||+||+.+++.|.+.|.++.+ |+|+|+++|+++ ..+.+|+++
T Consensus 603 v~E~G~-~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIi 678 (709)
T COG2274 603 VGEGGA-NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRII 678 (709)
T ss_pred cccCCC-CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEE
Confidence 998775 6999999999999999999999999999999999999999999999864 799999999974 578899999
Q ss_pred EEecCcEEEEEcCCCc
Q 001048 798 LMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 798 ~l~~~G~~v~~G~~~~ 813 (1174)
++. +|+++++|+.++
T Consensus 679 Vl~-~Gkiv~~gs~~e 693 (709)
T COG2274 679 VLD-QGKIVEQGSHEE 693 (709)
T ss_pred Ecc-CCceeccCCHHH
Confidence 886 599999999864
No 62
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=5.7e-42 Score=332.87 Aligned_cols=197 Identities=28% Similarity=0.374 Sum_probs=173.8
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHHHHHH
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEESIVF 682 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~ 682 (1174)
..+++|++||++||+||||||||||||+|+|... |.+|+|.+||++.... ...|-++.++|+.++|.++||++|+.+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 4678999999999999999999999999999987 5699999999987643 456678999999999999999999998
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHH
Q 001048 683 SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 762 (1174)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~ 762 (1174)
+..-. -.-.++.+++++.++..+||.++.+++-+ +|||||||||++||+|+++-+||+||||+|+|||.-+.
T Consensus 95 Gl~P~---LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPG---LKLNAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCcc---cccCHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 75321 11234566788999999999999888754 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 763 TVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 763 ~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
++..++.++++ ++.|++++||+|+ +.....|+++++. +|||.+.|+.+
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~-~Gri~~~g~~~ 215 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLD-NGRIAAQGSTQ 215 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEe-CCEEEeeccHH
Confidence 99999999986 4899999999997 7888899999997 59999999964
No 63
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4.4e-41 Score=380.18 Aligned_cols=217 Identities=26% Similarity=0.384 Sum_probs=188.4
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+ +++.+|+||||+|++||+++|+||||||||||+++|+|..+ |.+|+|.++|.+
T Consensus 6 ~~i~i~~l~k~~-------------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRY-------------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEE-------------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEe
Confidence 358899998754 23579999999999999999999999999999999999887 569999999998
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 652 KVQ--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 652 ~~~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
+.. ...++.+||++|++.+++.+||+||+.+.+.++ ..+..+..++++++++.+++.+..++.++ +||||
T Consensus 71 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 142 (306)
T PRK13537 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG-----ELSGG 142 (306)
T ss_pred cccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHH
Confidence 643 234577999999999999999999999876543 22334455678899999999988888764 69999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||++||+||+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|++++.|
T Consensus 143 ~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~-~G~i~~~g 220 (306)
T PRK13537 143 MKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIE-EGRKIAEG 220 (306)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999986 6777889988887 59999999
Q ss_pred CCCc
Q 001048 810 PLGQ 813 (1174)
Q Consensus 810 ~~~~ 813 (1174)
++++
T Consensus 221 ~~~~ 224 (306)
T PRK13537 221 APHA 224 (306)
T ss_pred CHHH
Confidence 9743
No 64
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-41 Score=347.73 Aligned_cols=218 Identities=24% Similarity=0.354 Sum_probs=180.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++.+|++..+.... ...++|+||||+|.+||+++|+|+||||||||.++|+|..+ +.+|+|.++|++.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCccc
Confidence 478888887654221 11269999999999999999999999999999999999988 5699999999876
Q ss_pred Ccc----cccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCC
Q 001048 653 VQH----TFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNG 725 (1174)
Q Consensus 653 ~~~----~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~ 725 (1174)
... .+.+.+.+|+||+ .+.|..||++.|.-+... ...++ .++++.++++.+||.+. .++. +.+
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~--~~~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSK--SQQRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccH--HHHHHHHHHHHcCCCHHHHhcC-----chh
Confidence 543 3567899999997 567999999999876543 22333 33448899999999753 3333 357
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
||||||||++|||||+.+|++|+||||||+||...+.+|+++|.+++++ |.|.|++|||.+ -+...||++++|. +|+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~-~G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMD-NGQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeee-CCe
Confidence 9999999999999999999999999999999999999999999999875 889999999975 4666778877776 599
Q ss_pred EEEEcCCCc
Q 001048 805 IIYFGPLGQ 813 (1174)
Q Consensus 805 ~v~~G~~~~ 813 (1174)
+++.++.++
T Consensus 220 ivE~~~~~~ 228 (252)
T COG1124 220 IVEIGPTEE 228 (252)
T ss_pred EEEeechhh
Confidence 999999754
No 65
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=5.8e-41 Score=381.55 Aligned_cols=219 Identities=22% Similarity=0.312 Sum_probs=186.6
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+... ...+.+|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 6788998765211 112479999999999999999999999999999999999987 56999999999875
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 QH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ..++.+||++|+..+++..||+||+.++.... ..++++..+++.++++.+||.+..|... .+||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 32 13567999999999999999999999876532 2345556678899999999998877764 4699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
|||||||+|||||+++|++|+||||||+||+.++..++++|++++++ |.|||++||+++ .+.+.+|++++|. +|+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~-~G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999875 999999999975 5667789888886 59999
Q ss_pred EEcCCCc
Q 001048 807 YFGPLGQ 813 (1174)
Q Consensus 807 ~~G~~~~ 813 (1174)
+.|++++
T Consensus 221 ~~g~~~~ 227 (343)
T TIGR02314 221 EQGTVSE 227 (343)
T ss_pred EEcCHHH
Confidence 9999743
No 66
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-41 Score=383.71 Aligned_cols=217 Identities=25% Similarity=0.381 Sum_probs=188.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. +++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 377888887541 23579999999999999999999999999999999999887 5699999999987
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
... ..++.+|||+|++.++|++||+||+.|+.+.+ ..++.+..++++++++.++|.+..++.. ++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 532 23467999999999999999999999986543 2345556678899999999998888765 36999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||+++ ++.+.+|++++|. +|+++..|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~-~G~i~~~g~ 218 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMN-GGVAEQIGT 218 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEECC
Confidence 9999999999999999999999999999999999999999875 999999999975 6788899998886 599999999
Q ss_pred CCc
Q 001048 811 LGQ 813 (1174)
Q Consensus 811 ~~~ 813 (1174)
+++
T Consensus 219 ~~~ 221 (356)
T PRK11650 219 PVE 221 (356)
T ss_pred HHH
Confidence 854
No 67
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.4e-40 Score=381.50 Aligned_cols=216 Identities=27% Similarity=0.419 Sum_probs=189.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRF-------------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEe-------------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 47889998754 23569999999999999999999999999999999999987 5699999999987
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQ-HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~-~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
.. ...++.+|||+|+..++|++||+||+.|+...+ ..++.+..++++++++.++|.+..|+.. ++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHH
Confidence 53 224567999999999999999999999986543 2345566778999999999998888765 46999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~-~G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMN-HGVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999765 999999999985 6788899998887 599999999
Q ss_pred CCc
Q 001048 811 LGQ 813 (1174)
Q Consensus 811 ~~~ 813 (1174)
+++
T Consensus 219 ~~~ 221 (353)
T TIGR03265 219 PQE 221 (353)
T ss_pred HHH
Confidence 854
No 68
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-40 Score=380.05 Aligned_cols=216 Identities=23% Similarity=0.414 Sum_probs=189.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++
T Consensus 6 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRF-------------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEE-------------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 58889998754 23569999999999999999999999999999999999987 5699999999987
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
... ..++.+|||+|+..++|++||+||+.|+.+.+ ..++.+..++++++++.++|.+..|+.. +.||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 543 23467999999999999999999999987543 2345566778999999999998877764 46999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||+|||||+.+|++|+|||||||||+.++..+.+.|+++.++ |+|+|++||+++ ++.+.+|++++|. +|+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~-~G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMN-KGKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999985 6778899999997 599999999
Q ss_pred CCc
Q 001048 811 LGQ 813 (1174)
Q Consensus 811 ~~~ 813 (1174)
+++
T Consensus 221 ~~~ 223 (351)
T PRK11432 221 PQE 223 (351)
T ss_pred HHH
Confidence 854
No 69
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-40 Score=362.72 Aligned_cols=214 Identities=25% Similarity=0.365 Sum_probs=180.6
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSF-------------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 567777654 23479999999999999999999999999999999999887 568999999987643
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 655 H------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 655 ~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
. ..++.++|++|++.+++.+||+||+.++..... ....++..++++++++.+++.+..++.++ .|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPA-----ELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCH
Confidence 1 245679999999989899999999998753221 12344445678889999999877776653 6999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~-~G~i~~ 217 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLY-DGKIVA 217 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEE-CCeEEE
Confidence 9999999999999999999999999999999999999999999874 899999999975 5667789998886 599999
Q ss_pred EcCCC
Q 001048 808 FGPLG 812 (1174)
Q Consensus 808 ~G~~~ 812 (1174)
.|+++
T Consensus 218 ~g~~~ 222 (235)
T cd03261 218 EGTPE 222 (235)
T ss_pred ecCHH
Confidence 99864
No 70
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.6e-40 Score=379.50 Aligned_cols=216 Identities=27% Similarity=0.388 Sum_probs=188.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEE--EEEEECCe
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE--GDIRIGGY 650 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~--G~i~~~g~ 650 (1174)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+ |+|.++|+
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCE
Confidence 478889987542 3469999999999999999999999999999999999887 457 99999999
Q ss_pred eCCcc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 651 PKVQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 651 ~~~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
++... ..++.+|||+|+..++|++||+||+.|+...+ ..++.+..++++++++.++|.+..|+.. ++||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 87432 23567999999999999999999999986543 2345556678999999999998888775 469999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET--GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~-~G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMK-DGRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 999999999999999999999999999999999999999999876 799999999975 6778899999987 599999
Q ss_pred EcCCCc
Q 001048 808 FGPLGQ 813 (1174)
Q Consensus 808 ~G~~~~ 813 (1174)
.|++++
T Consensus 220 ~g~~~~ 225 (362)
T TIGR03258 220 HGEPQA 225 (362)
T ss_pred EcCHHH
Confidence 999754
No 71
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-40 Score=355.60 Aligned_cols=216 Identities=26% Similarity=0.386 Sum_probs=188.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.+.++|++|+++ .. ..+|+|+|+++++||.++|+||||||||||+++|+|..+ |.+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~-----------~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYP-----------GR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcC-----------CC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeec
Confidence 367889988652 22 589999999999999999999999999999999999988 5689999999986
Q ss_pred C----cccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 653 V----QHTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 653 ~----~~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
. ....++.+|||+|++ ..+..-||.|.+.|+..-. ..+.++.+++++++++.+++.+..++.. ..||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPP-----FNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCc-----cccC
Confidence 5 345678899999996 4466789999999986432 4566678899999999999999877764 4799
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
|||||||+||.+|+.+|++|+|||||||||+..+..+++.++++.++ |+|+|++|||.+ .+.+.+|+++++. +|+++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~-~G~i~ 218 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLD-DGKIL 218 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEE-CCEEe
Confidence 99999999999999999999999999999999999999999999877 799999999975 6777789998887 59999
Q ss_pred EEcCCC
Q 001048 807 YFGPLG 812 (1174)
Q Consensus 807 ~~G~~~ 812 (1174)
++|++.
T Consensus 219 ~~g~p~ 224 (235)
T COG1122 219 ADGDPA 224 (235)
T ss_pred ecCCHH
Confidence 999863
No 72
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=5.7e-40 Score=374.50 Aligned_cols=217 Identities=23% Similarity=0.352 Sum_probs=187.9
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|++..+ +++.+|+|+||+|++||++||+||||||||||+++|+|..+ |.+|+|.++|++
T Consensus 40 ~~i~i~nl~k~y-------------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSY-------------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEE
Confidence 458999998854 23579999999999999999999999999999999999887 569999999998
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 652 KVQ--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 652 ~~~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
+.. ...++.+||++|++.+++.+||+||+.+....+ .....+..++++++++.++|.+..++.++ +||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVS-----DLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHH
Confidence 643 234567999999999999999999999765543 12333445667889999999988888765 69999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||++||+||+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|++++.|
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~-~G~i~~~g 254 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLE-AGRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEc
Confidence 999999999999999999999999999999999999999999878999999999985 6778899999887 59999999
Q ss_pred CCCc
Q 001048 810 PLGQ 813 (1174)
Q Consensus 810 ~~~~ 813 (1174)
++++
T Consensus 255 ~~~~ 258 (340)
T PRK13536 255 RPHA 258 (340)
T ss_pred CHHH
Confidence 9753
No 73
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=7.4e-40 Score=376.98 Aligned_cols=216 Identities=25% Similarity=0.347 Sum_probs=188.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++
T Consensus 14 ~L~l~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSF-------------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEE-------------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 48899998754 23579999999999999999999999999999999999987 5699999999987
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
... ..++.+|||+|++.++|++||+||+.|+...+ ..+..+..++++++++.++|.+..++.. .+||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 532 23567999999999999999999999986533 2344555677899999999998888765 46999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||+|||||+.+|++|+|||||||||..++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~-~G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMR-DGRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999875 999999999975 6788899999997 599999999
Q ss_pred CCc
Q 001048 811 LGQ 813 (1174)
Q Consensus 811 ~~~ 813 (1174)
+++
T Consensus 229 ~~~ 231 (375)
T PRK09452 229 PRE 231 (375)
T ss_pred HHH
Confidence 754
No 74
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.8e-41 Score=333.50 Aligned_cols=208 Identities=25% Similarity=0.378 Sum_probs=183.9
Q ss_pred cccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc----ccceEEEEccCCCCC
Q 001048 596 QTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT----FARISGYCEQNDIHS 671 (1174)
Q Consensus 596 ~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~Q~~~~~ 671 (1174)
++++++++|||+++++||+++|+|||||||||.+.++.|+.+ +.+|+|.+||.+++... -+.-+||+||++..|
T Consensus 14 y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 14 YKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred hCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 346789999999999999999999999999999999999987 56999999999986532 233589999999999
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeC
Q 001048 672 PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 751 (1174)
-.+||+|||......+.. +....+++++++++++.+++.|+++.+.. .||||||+|+.|||||+.+|+.++|||
T Consensus 92 r~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGERRR~EIARaLa~~P~fiLLDE 165 (243)
T COG1137 92 RKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAY-----SLSGGERRRVEIARALAANPKFILLDE 165 (243)
T ss_pred hcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCccc-----ccccchHHHHHHHHHHhcCCCEEEecC
Confidence 999999999987766532 22234556678899999999999988743 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 752 PTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|++|+||.+..+|.++++.|++.|..|++|-|... +....+|+..++.+ |++..+|++++
T Consensus 166 PFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~e 225 (243)
T COG1137 166 PFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPEE 225 (243)
T ss_pred CccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHHH
Confidence 99999999999999999999999999999999987 78899999999975 99999999865
No 75
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=7.2e-40 Score=375.58 Aligned_cols=219 Identities=27% Similarity=0.396 Sum_probs=187.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|+++
T Consensus 2 ~L~i~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 66 (353)
T PRK10851 2 SIEIANIKKSF-------------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDV 66 (353)
T ss_pred EEEEEEEEEEe-------------CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 36788888754 23579999999999999999999999999999999999887 5689999999987
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 653 VQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
... ..++.++||+|++.+++++||+||+.|+...... ...+.++..++++++++.++|.+..|+.. ..|||||
T Consensus 67 ~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq 141 (353)
T PRK10851 67 SRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQ 141 (353)
T ss_pred CCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHH
Confidence 532 2346799999999999999999999998653211 12344555678899999999988877765 4699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|++++.|
T Consensus 142 ~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~-~G~i~~~g 219 (353)
T PRK10851 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMS-QGNIEQAG 219 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEc
Confidence 99999999999999999999999999999999999999999876 899999999985 6778899999887 59999999
Q ss_pred CCCc
Q 001048 810 PLGQ 813 (1174)
Q Consensus 810 ~~~~ 813 (1174)
++++
T Consensus 220 ~~~~ 223 (353)
T PRK10851 220 TPDQ 223 (353)
T ss_pred CHHH
Confidence 9754
No 76
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-39 Score=351.57 Aligned_cols=199 Identities=31% Similarity=0.469 Sum_probs=170.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++... ..++.++|++|++.+++.+|++
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 579999999999999999999999999999999999877 5689999999886432 2345789999998888899999
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCC
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD 757 (1174)
||+.++.... ........++++++++.+++.+..++.++ .||||||||++|||||+.+|++|+|||||+|||
T Consensus 91 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD 162 (213)
T cd03259 91 ENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPH-----ELSGGQQQRVALARALAREPSLLLLDEPLSALD 162 (213)
T ss_pred HHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9998875432 12333445668889999999877776653 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 758 ARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 758 ~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++++. +|++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~G~i~~~g 213 (213)
T cd03259 163 AKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMN-EGRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 99999999999999764 899999999975 5667889988887 58988765
No 77
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-39 Score=374.70 Aligned_cols=216 Identities=25% Similarity=0.386 Sum_probs=188.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|++..+ +++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++
T Consensus 19 ~l~l~~v~~~~-------------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSF-------------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 58899998754 23469999999999999999999999999999999999987 5699999999987
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQ-HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~-~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
.. ...++.+|||+|++.++|++||.||+.|+.+.+ ..+..+..++++++++.++|.+..++.. .+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 43 234567999999999999999999999986543 2345556678899999999998877765 46999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||+|||||+.+|++|+|||||++||..++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~-~G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMN-RGKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEe-CCEEEEEcC
Confidence 9999999999999999999999999999999999999998764 899999999975 6788899999987 599999999
Q ss_pred CCc
Q 001048 811 LGQ 813 (1174)
Q Consensus 811 ~~~ 813 (1174)
+++
T Consensus 234 ~~~ 236 (377)
T PRK11607 234 PEE 236 (377)
T ss_pred HHH
Confidence 754
No 78
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=9.5e-40 Score=353.21 Aligned_cols=209 Identities=24% Similarity=0.364 Sum_probs=174.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. .+.+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~-----------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYP-----------GGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEec-----------CCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 56788887542 112469999999999999999999999999999999999877 56899999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 QH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ..++.++|++|++.+++.+||+||+.++...+ .....+..++++++++.+++.+..++..+ +||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPM-----QLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCC
Confidence 21 13567899999998889999999999875432 12333445678899999999877776653 699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|++
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~-~G~i 216 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLS-RGRL 216 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCcC
Confidence 99999999999999999999999999999999999999999999877999999999975 5666789888886 4663
No 79
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-39 Score=351.37 Aligned_cols=201 Identities=27% Similarity=0.431 Sum_probs=173.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. .++.++|++|++.+++.+|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHH
Confidence 579999999999999999999999999999999999876 568999999988642 3567899999998888899999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
|+.++...+ ........+.++++++.+++.+..++.+ ..||||||||++|||||+.+|++|+|||||+|||+
T Consensus 93 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 999875433 1233344567889999999987766665 36999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec-CcEEEEEcCCC
Q 001048 759 RAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN-GGRIIYFGPLG 812 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~v~~G~~~ 812 (1174)
.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|+++++.+ +|++++.++.+
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999865 4899999999975 56778899998874 59999988753
No 80
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=9.3e-40 Score=373.45 Aligned_cols=204 Identities=24% Similarity=0.331 Sum_probs=179.5
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc---c----cceEEEEccCCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT---F----ARISGYCEQNDIH 670 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~---~----~~~~~~v~Q~~~~ 670 (1174)
++.+|+|+||+|++||+++|+|||||||||||++|+|..+ |.+|+|.++|+++.... . ++.++||+|++.+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 4579999999999999999999999999999999999987 57999999999875422 2 5679999999999
Q ss_pred CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEe
Q 001048 671 SPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 750 (1174)
Q Consensus 671 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlD 750 (1174)
++++||+||+.++.... ..+.++..+++.++++.++|++..++..+ .|||||||||+|||||+.+|++||||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999986543 23455667788999999999887777653 69999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 751 EPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 751 EPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|. +|+++..|++++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~-~G~iv~~g~~~e 216 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMK-AGEIVQVGTPDE 216 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEeeCCHHH
Confidence 999999999999999999999764 899999999975 5678889998886 599999999754
No 81
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=7.8e-40 Score=370.72 Aligned_cols=203 Identities=28% Similarity=0.432 Sum_probs=177.5
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
++.+|+|+||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.. ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 3579999999999999999999999999999999999887 568999999988643 234567999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
|+||+.+.+.++ .....+..++++++++.++|.+..++.++ .|||||||||+||+||+++|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999876543 22334455678899999999887787764 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 756 LDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|++++.|+++
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~-~G~i~~~g~~~ 209 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIID-HGRIIAEGTPE 209 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 9999999999999999877999999999975 6777889988886 59999999874
No 82
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.1e-39 Score=367.39 Aligned_cols=215 Identities=25% Similarity=0.357 Sum_probs=183.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ |.+|+|.++|.++
T Consensus 4 ~i~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSY-------------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEe-------------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 57889998754 23579999999999999999999999999999999999877 5689999999876
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 653 VQ--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
.. ...++.+||++|++.+++.+||+||+.+..... ..+..+..++++++++.+++.+..++.++ +|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVA-----LLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHH
Confidence 42 224567999999998889999999998755432 12333445567889999999887777764 699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLE-SGRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999975 6667889988886 599999998
Q ss_pred CC
Q 001048 811 LG 812 (1174)
Q Consensus 811 ~~ 812 (1174)
++
T Consensus 219 ~~ 220 (303)
T TIGR01288 219 PH 220 (303)
T ss_pred HH
Confidence 74
No 83
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-39 Score=351.24 Aligned_cols=213 Identities=28% Similarity=0.372 Sum_probs=179.8
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~~~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 66 (220)
T cd03265 2 EVENLVKKY-------------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEEE-------------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCc
Confidence 567777643 23579999999999999999999999999999999999876 568999999987642
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 655 --HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 655 --~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
...++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+++.+..++.++ .|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 138 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVK-----TYSGGMRR 138 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHH
Confidence 223457899999998889999999999875433 12333445678899999999877777654 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++.|++
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 216 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIID-HGRIIAEGTP 216 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEeCCh
Confidence 999999999999999999999999999999999999999876 899999999975 5667788888886 5999998876
Q ss_pred C
Q 001048 812 G 812 (1174)
Q Consensus 812 ~ 812 (1174)
+
T Consensus 217 ~ 217 (220)
T cd03265 217 E 217 (220)
T ss_pred H
Confidence 4
No 84
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-39 Score=375.14 Aligned_cols=216 Identities=27% Similarity=0.401 Sum_probs=186.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++
T Consensus 3 ~l~i~~l~~~~-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAY-------------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEe-------------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 37888888754 23579999999999999999999999999999999999887 5689999999987
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
... ..++.++||+|++.+++.+||+||+.|+...+ ..+..+..++++++++.++|.+..++.++ +||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~-----~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHH
Confidence 432 23467999999999999999999999986533 22344556778999999999887777653 6999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~-~G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999975 6777889998887 599999999
Q ss_pred CCc
Q 001048 811 LGQ 813 (1174)
Q Consensus 811 ~~~ 813 (1174)
+++
T Consensus 218 ~~~ 220 (369)
T PRK11000 218 PLE 220 (369)
T ss_pred HHH
Confidence 754
No 85
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-40 Score=339.19 Aligned_cols=209 Identities=25% Similarity=0.379 Sum_probs=183.0
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc----ccceEEEEccCCCCCC
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT----FARISGYCEQNDIHSP 672 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~Q~~~~~~ 672 (1174)
+...+++||||++++||+++|+||||||||||+|+|+|.++ |++|+|.++|+++.... .+.-++.-+|...+|+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 46789999999999999999999999999999999999998 66999999999876532 2345788999999999
Q ss_pred CCCHHHHHHHHHhhcc--------CCC-CCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcC
Q 001048 673 NITVEESIVFSAWLRL--------STQ-IDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVAN 743 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~--------~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~ 743 (1174)
++||.||+..++..+. +.. ...++..+++.++++.+||.+.+|++.| +||+|||||+.|||||+++
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 9999999998855321 111 1345566788999999999999999986 5999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcc
Q 001048 744 PSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQH 814 (1174)
Q Consensus 744 p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~ 814 (1174)
|++|+||||.+||.+....++.+.|++++++ |.||++|.|+.+ -++..+|++++|. .|+++..|+|++.
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~-~G~~IAeG~P~eV 237 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLN-YGEVIAEGTPEEV 237 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEecc-CCcCcccCCHHHH
Confidence 9999999999999999999999999999874 799999999987 5888899999987 5999999999653
No 86
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-39 Score=371.78 Aligned_cols=219 Identities=21% Similarity=0.317 Sum_probs=184.6
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+... ..++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5788888765210 113579999999999999999999999999999999999987 56899999999865
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 QH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ..++.+||++|++.+++.+||+||+.++.... ..+..+..++++++++.+||.+..++.+ ++||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 13567999999999999999999999876443 2234445567889999999988777664 3699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++++. +|+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~-~G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVID-AGRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999765 899999999975 5667789988886 59999
Q ss_pred EEcCCCc
Q 001048 807 YFGPLGQ 813 (1174)
Q Consensus 807 ~~G~~~~ 813 (1174)
+.|++++
T Consensus 221 ~~g~~~~ 227 (343)
T PRK11153 221 EQGTVSE 227 (343)
T ss_pred EEcCHHH
Confidence 9998643
No 87
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-39 Score=317.54 Aligned_cols=201 Identities=27% Similarity=0.420 Sum_probs=178.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
+.+|+|+|++|.+||.++++||||||||||||+++|..+ |..|+|.+||+++....- ..|.|+|++.++|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 569999999999999999999999999999999999988 569999999998864322 3489999999999999999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
|+.|+.+++ .+++.++.+++.+.+..+||.+..++.+ .+|||||||||.|||||..+|++|+||||+++||.
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999999887 5778899999999999999999887765 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec-CcEEEEEcCCC
Q 001048 759 RAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN-GGRIIYFGPLG 812 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~v~~G~~~ 812 (1174)
-+++++.++|-++.+ .|+.++++||+.+ +..-.++++++++- .||++..-+++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999998865 5999999999986 45556788888863 37888877763
No 88
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=4.3e-39 Score=347.45 Aligned_cols=210 Identities=27% Similarity=0.415 Sum_probs=177.1
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRF-------------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEE-------------CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 567777653 23479999999999999999999999999999999999876 568999999988643
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH
Q 001048 655 H-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733 (1174)
Q Consensus 655 ~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 733 (1174)
. ..++.++|++|++.+++..|++||+.++.... .....+..++++++++.+++.+..+..+ +.||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHH
Confidence 2 22457999999998888899999999875432 2233444567888999999987777665 3699999999
Q ss_pred HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 734 v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++.|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMN-DGQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEE-CCEEEecC
Confidence 99999999999999999999999999999999999999864 899999999975 5667789888886 58998876
No 89
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-39 Score=353.39 Aligned_cols=218 Identities=26% Similarity=0.393 Sum_probs=181.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 377888887542 3579999999999999999999999999999999999877 5689999999886
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 653 VQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
... ..++.++|++|++.+++.+||+||+.++...+.. ......+..++++++++.+++.+..++.+ ..|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 432 2245689999999888899999999987543211 00122334456788999999987766654 3699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++.|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMN-KGRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEec
Confidence 99999999999999999999999999999999999999999875 899999999975 5677789998886 58999999
Q ss_pred CCC
Q 001048 810 PLG 812 (1174)
Q Consensus 810 ~~~ 812 (1174)
+++
T Consensus 220 ~~~ 222 (239)
T cd03296 220 TPD 222 (239)
T ss_pred CHH
Confidence 864
No 90
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.7e-39 Score=353.70 Aligned_cols=205 Identities=27% Similarity=0.406 Sum_probs=173.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc----ccceEEEEccCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT----FARISGYCEQNDIHSPNI 674 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~Q~~~~~~~l 674 (1174)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.... .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 469999999999999999999999999999999999877 56899999998864321 234589999999999999
Q ss_pred CHHHHHHHHHhhccCCC-------CCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEE
Q 001048 675 TVEESIVFSAWLRLSTQ-------IDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSII 747 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~~-------~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~il 747 (1174)
||+||+.++........ ....+..+.++++++.+++.+..++.+ +.|||||||||+|||||+.+|++|
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~ll 165 (236)
T cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA-----GELSYGQQRRLEIARALATDPKLL 165 (236)
T ss_pred CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998754321110 012344567888999999987777665 369999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 748 FMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 748 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|++++.|+++
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 228 (236)
T cd03219 166 LLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLD-QGRVIAEGTPD 228 (236)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEeecCHH
Confidence 999999999999999999999999877999999999975 5667789888886 58999999864
No 91
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-39 Score=347.33 Aligned_cols=209 Identities=24% Similarity=0.424 Sum_probs=176.5
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRF-------------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEE-------------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 567777643 23469999999999999999999999999999999999876 569999999987643
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHH
Q 001048 655 HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRL 734 (1174)
Q Consensus 655 ~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv 734 (1174)
..++.++|++|++.+++.+|++||+.+....+ .....+..+.++++++.+++.+..++.+ ++||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHH
Confidence 34567899999998888999999998865443 1223344567888999999987766654 36999999999
Q ss_pred HHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 735 TIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 735 ~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLN-KGRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEe-CCEEEecC
Confidence 9999999999999999999999999999999999999877899999999975 5667788888886 58988764
No 92
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=4.5e-39 Score=352.10 Aligned_cols=213 Identities=24% Similarity=0.368 Sum_probs=179.6
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++...
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRY-------------GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEe-------------CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 567777643 23579999999999999999999999999999999999877 568999999987643
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 655 H---T-FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 655 ~---~-~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
. . .++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+++.+..++.+ +.|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHH
Confidence 2 1 2346899999999999999999999865432 1223344556788999999987777665 3699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|++++.|+
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~ 216 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIY-EGKVLAEGT 216 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEEeC
Confidence 99999999999999999999999999999999999999999877999999999975 6778889888886 599999988
Q ss_pred CC
Q 001048 811 LG 812 (1174)
Q Consensus 811 ~~ 812 (1174)
.+
T Consensus 217 ~~ 218 (232)
T cd03218 217 PE 218 (232)
T ss_pred HH
Confidence 64
No 93
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.1e-39 Score=373.48 Aligned_cols=219 Identities=25% Similarity=0.362 Sum_probs=185.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|+++
T Consensus 3 ~L~~~nls~~y-------------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEF-------------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEE-------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 37788888754 24579999999999999999999999999999999999887 5689999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLST-QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.. ...++.+|||+|++.+++.+||+||+.++...+... ........++++++++.+++.+..++.+ ++|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 53 234677999999999989999999999864321100 1112334567899999999998888765 36999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
|||||++|||||+++|++|+|||||+|||+.++..++++|++++++|+|||+++|+++ ++.+.+|+++++. +|++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~-~G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLA-DGRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 5668889988886 5999999
Q ss_pred cCCCc
Q 001048 809 GPLGQ 813 (1174)
Q Consensus 809 G~~~~ 813 (1174)
|++++
T Consensus 221 G~~~e 225 (402)
T PRK09536 221 GPPAD 225 (402)
T ss_pred cCHHH
Confidence 99864
No 94
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=6.2e-39 Score=347.53 Aligned_cols=215 Identities=26% Similarity=0.435 Sum_probs=179.1
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+... ....++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 5678888754210 001269999999999999999999999999999999999877 56899999998864
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 654 Q--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 654 ~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
. ..+++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+++.+..++.++ .||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG-----GFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhh-----hcCHHHH
Confidence 3 234567999999998888899999998865432 22334455678899999999877776653 6999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~-~G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLH-RGRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEeecC
Confidence 9999999999999999999999999999999999999999877999999999975 5667789988886 58988754
No 95
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-39 Score=330.22 Aligned_cols=215 Identities=25% Similarity=0.379 Sum_probs=177.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|++..+ ++.++|+||||++++||+++|+||||+|||||||+|+|..+ +.+|+|.++|+++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecC
Confidence 6677777533 45789999999999999999999999999999999999887 45899999999986
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-CCCcccccccCCCCCCCCH
Q 001048 654 QH----TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-LDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 654 ~~----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~LSg 728 (1174)
.. ..++-++||||....|+.+||+|||..++..+.. ++......+++.+.+- |.+..+.+.| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 53 2345689999999999999999999998654321 1111222566666664 4455566554 5999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
||||.++|||||+.+|++|+|||||.||-|.-.++|.+.+++++++ |.||+++.+... ...+.+|+.++|. .|++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle-~Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLE-NGRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEe-CCEEEE
Confidence 9999999999999999999999999999999999999999999976 789999999865 5667889998887 599999
Q ss_pred EcCCCcc
Q 001048 808 FGPLGQH 814 (1174)
Q Consensus 808 ~G~~~~~ 814 (1174)
.|+.++.
T Consensus 218 ~G~~~eL 224 (237)
T COG0410 218 SGTAAEL 224 (237)
T ss_pred ecCHHHH
Confidence 9997653
No 96
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=7.4e-39 Score=362.28 Aligned_cols=214 Identities=22% Similarity=0.394 Sum_probs=184.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~-------------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLY-------------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEE-------------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 6788888754 23579999999999999999999999999999999999877 56999999998864
Q ss_pred cc--cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 654 QH--TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 654 ~~--~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
.. ..++.+||++|++.+++.+||.||+.+.+.++ ....++..++++++++.+||.+..++.++ .||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHH
Confidence 32 34567999999999999999999999876553 22334445678899999999988887764 6999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
||++||+||+++|++|+|||||+|||+.+++.+.+.|+++++ ++|||++||+++ ++.+.+|+++++. +|++++.|+.
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~-~G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIIN-KGKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999999999999999865 799999999985 6778889998887 5999999997
Q ss_pred Cc
Q 001048 812 GQ 813 (1174)
Q Consensus 812 ~~ 813 (1174)
++
T Consensus 217 ~~ 218 (301)
T TIGR03522 217 DE 218 (301)
T ss_pred HH
Confidence 54
No 97
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=6.8e-39 Score=347.19 Aligned_cols=194 Identities=28% Similarity=0.469 Sum_probs=165.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc-------ccceEEEEccCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT-------FARISGYCEQNDIHS 671 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~-------~~~~~~~v~Q~~~~~ 671 (1174)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.... .++.++|++|++.++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 579999999999999999999999999999999999887 56899999998764311 245789999999998
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeC
Q 001048 672 PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 751 (1174)
+.+||+||+.++...+ ........++++++++.+++.+..++.+ +.|||||||||+|||||+.+|++|+|||
T Consensus 95 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDE 166 (218)
T cd03255 95 PDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADE 166 (218)
T ss_pred CCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 9999999999876433 1223344567889999999987766654 3699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 752 PTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||+|||+.++..+.+.|+++++ +|+|||++||+++ ++ +.+|+++++.+ |++
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~i 218 (218)
T cd03255 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GKI 218 (218)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-CcC
Confidence 9999999999999999999987 5899999999975 34 57888888864 653
No 98
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-38 Score=347.29 Aligned_cols=217 Identities=24% Similarity=0.368 Sum_probs=179.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+... ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 47889998864210 011469999999999999999999999999999999999876 5699999999886
Q ss_pred Cccc------c-cceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 653 VQHT------F-ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 653 ~~~~------~-~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
.... . ++.++|++|++.+++.+|++||+.+..... .....+.+++++++++.+|+.+..++.. ..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 4321 1 256899999998888999999999865432 1233444567889999999987766654 36
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||+++ ....+|+++++. +|+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~--~~~~~~~~~~l~-~G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ--LAKRMSRQLEMR-DGR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhhCEEEEEE-CCE
Confidence 999999999999999999999999999999999999999999999975 5899999999975 345568887775 699
Q ss_pred EEEEcCC
Q 001048 805 IIYFGPL 811 (1174)
Q Consensus 805 ~v~~G~~ 811 (1174)
+++.|+.
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9998875
No 99
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8e-40 Score=368.39 Aligned_cols=214 Identities=24% Similarity=0.413 Sum_probs=179.5
Q ss_pred CccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECC
Q 001048 570 EPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG 649 (1174)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 649 (1174)
.+..++|+||++++. +++++|+++||+|++||-+||+|+|||||||++|+|.+..+ .+|+|++||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 344699999999763 24569999999999999999999999999999999998776 489999999
Q ss_pred eeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHc-------CCCCccccccc
Q 001048 650 YPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI-------ELDGIKDSLVG 719 (1174)
Q Consensus 650 ~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~~~ 719 (1174)
+++.+ ...|+.|||||||..+ ++.||.+||.|+.. ..+.++ +.++.+.. .+++..+|.+|
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~L-FndTIl~NI~YGn~-----sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVL-FNDTILYNIKYGNP-----SASDEE----VVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCcccc-cchhHHHHhhcCCC-----CcCHHH----HHHHHHHcCcHHHHHhccccchhhHh
Confidence 98754 4678899999997666 56799999999742 223222 23333333 34567889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 720 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
+.|. .|||||||||+||||+++||+|+++|||||+||+.+++++++.+.+. ..|+|+|++.|+. +..+.||+++++
T Consensus 483 erG~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l 558 (591)
T KOG0057|consen 483 ERGL-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVL 558 (591)
T ss_pred hccc-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEE
Confidence 9876 49999999999999999999999999999999999999999999994 4599999999986 568899999999
Q ss_pred ecCcEEEEEcCCCc
Q 001048 800 KNGGRIIYFGPLGQ 813 (1174)
Q Consensus 800 ~~~G~~v~~G~~~~ 813 (1174)
.+ |++.+.|+.++
T Consensus 559 ~n-G~v~e~gth~e 571 (591)
T KOG0057|consen 559 DN-GTVKEYGTHSE 571 (591)
T ss_pred EC-CeeEEeccHHH
Confidence 75 89999999854
No 100
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=7.2e-39 Score=347.53 Aligned_cols=201 Identities=27% Similarity=0.450 Sum_probs=172.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++.+++.+|+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 579999999999999999999999999999999999877 569999999988643 2345679999999988889999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
+||+.+..... .....+..++++++++.+++.+..++.++ .||||||||++|||+|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEP~~~L 164 (220)
T cd03263 93 REHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRAR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 99999875433 12333445668889999999877776653 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 757 DARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
|+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|+++++. +|++++.|+++
T Consensus 165 D~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~ 217 (220)
T cd03263 165 DPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMS-DGKLRCIGSPQ 217 (220)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEE-CCEEEecCCHH
Confidence 99999999999999876 699999999975 5666788888886 59999999864
No 101
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=7.1e-39 Score=349.20 Aligned_cols=214 Identities=26% Similarity=0.354 Sum_probs=176.6
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCC-----CCCeEEEEEEECC
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK-----TGGIIEGDIRIGG 649 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~-----~~~~~~G~i~~~g 649 (1174)
+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|.. + +.+|+|.++|
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYY-------------GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDG 66 (227)
T ss_pred EEEEEEEEc-------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECC
Confidence 567777643 2347999999999999999999999999999999999987 5 5689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
+++.. ...++.++|++|++.++ .+||+||+.++...+. .....+..++++++++.+++.+..+.... +.
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 88642 12356789999998877 7999999998754321 11122245667889999999876555431 24
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ .+.+.+|+++++. +|+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~-~G~ 217 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLL-NGR 217 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEe-CCE
Confidence 69999999999999999999999999999999999999999999999876 99999999975 5667789888887 589
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 218 i~~~g~~~ 225 (227)
T cd03260 218 LVEFGPTE 225 (227)
T ss_pred EEEecCcc
Confidence 99999864
No 102
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.5e-39 Score=350.44 Aligned_cols=218 Identities=22% Similarity=0.328 Sum_probs=181.0
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+... ...+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5678887754210 001279999999999999999999999999999999999987 56899999999864
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 QH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ..++.++|++|++.+++.+|++||+.+....+ ........+.++++++.+++.+..++.. ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 32 12467899999999988999999998875433 1233444567889999999987777654 3699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++++. +|+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVME-KGEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999775 899999999975 5667789888886 59999
Q ss_pred EEcCCC
Q 001048 807 YFGPLG 812 (1174)
Q Consensus 807 ~~G~~~ 812 (1174)
+.|+.+
T Consensus 221 ~~~~~~ 226 (233)
T cd03258 221 EEGTVE 226 (233)
T ss_pred EecCHH
Confidence 998853
No 103
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-39 Score=358.95 Aligned_cols=219 Identities=23% Similarity=0.347 Sum_probs=181.0
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+.... ...+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 77888888642100 012479999999999999999999999999999999999887 56999999999875
Q ss_pred cc-----cccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC--CcccccccCCCCCC
Q 001048 654 QH-----TFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD--GIKDSLVGLPGVNG 725 (1174)
Q Consensus 654 ~~-----~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~~~~~~~~ 725 (1174)
.. ..++.+|||+|++. .++..||+||+.++.... ..+.++..++++++++.+||. +..|+.. +.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----FE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----cc
Confidence 31 34567999999863 344689999999875432 234555667789999999996 5556554 46
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~-~G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMN-KGK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999865 999999999975 5667789999887 599
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 223 i~~~g~~~ 230 (287)
T PRK13637 223 CELQGTPR 230 (287)
T ss_pred EEEECCHH
Confidence 99999864
No 104
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=357.51 Aligned_cols=204 Identities=21% Similarity=0.411 Sum_probs=170.7
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc----ccceEEEEccC---CCCCCC
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT----FARISGYCEQN---DIHSPN 673 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~Q~---~~~~~~ 673 (1174)
.++|+||++++||+++|-|-=|||+|-|+++|.|..+ +.+|+|.+||+++...+ .+..++|||.| +-++..
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 5789999999999999999999999999999999665 45899999999875432 34568999976 567889
Q ss_pred CCHHHHHHHHHhhccC-C-CCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEe
Q 001048 674 ITVEESIVFSAWLRLS-T-QIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 750 (1174)
Q Consensus 674 lTv~e~l~~~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlD 750 (1174)
++|++|+.++...+.. . ..+.....+.+++..+.+++.- ..+..+ ..||||.||+|.|||.|..+|++||||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI-----GTLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-----hcCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 9999999988322211 1 2455566677888999888753 233444 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 751 EPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 751 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|||.|.|.-++.+|.+++++++++|++||++|-++. |+...+||++++. +|+++..=+.++
T Consensus 427 EPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~-~Gri~~e~~~~~ 487 (500)
T COG1129 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMR-EGRIVGELDREE 487 (500)
T ss_pred CCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEE-CCEEEEEecccc
Confidence 999999999999999999999999999999999975 8999999999997 599987655543
No 105
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3e-39 Score=310.33 Aligned_cols=212 Identities=25% Similarity=0.382 Sum_probs=178.3
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++.++++..+.. ......||++|++.|++||.+||+|||||||||||-+++|+.. +.+|+|.+.|++..
T Consensus 7 i~~~~l~ktvg~---------~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~ 75 (228)
T COG4181 7 IEVHHLSKTVGQ---------GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLH 75 (228)
T ss_pred eehhhhhhhhcC---------CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchh
Confidence 555666554422 2345789999999999999999999999999999999999987 56999999999864
Q ss_pred cc------c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 001048 654 QH------T-FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726 (1174)
Q Consensus 654 ~~------~-~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 726 (1174)
.. . +.+.+|+|+|...+.|++|..||+.....++.. ...+..+.+.+.++.+||.+-.+... .+|
T Consensus 76 ~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~HyP-----~qL 147 (228)
T COG4181 76 KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHYP-----AQL 147 (228)
T ss_pred hcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccCc-----ccc
Confidence 32 1 346799999999999999999999998877642 22334556788999999987665543 479
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||+|||+||||++..|+|||.||||-+||..+..+|.++|-.+.+ .|.|.|++|||| .+...|+|++-+. .|++
T Consensus 148 SGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~-~G~l 224 (228)
T COG4181 148 SGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLR-SGRL 224 (228)
T ss_pred CchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeee-ccee
Confidence 99999999999999999999999999999999999999999999875 499999999987 5688899999887 5898
Q ss_pred EE
Q 001048 806 IY 807 (1174)
Q Consensus 806 v~ 807 (1174)
+.
T Consensus 225 ~~ 226 (228)
T COG4181 225 VE 226 (228)
T ss_pred cc
Confidence 74
No 106
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-39 Score=352.87 Aligned_cols=206 Identities=29% Similarity=0.372 Sum_probs=171.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc------cccceEEEEccCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH------TFARISGYCEQNDIHSP 672 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~Q~~~~~~ 672 (1174)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++... ..++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 579999999999999999999999999999999999876 5689999999876432 23467899999998889
Q ss_pred CCCHHHHHHHHHhhcc-----CCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEE
Q 001048 673 NITVEESIVFSAWLRL-----STQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSII 747 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~il 747 (1174)
.+||+||+.++..... ..........++++++++.+++.+..++.+ .+|||||||||+|||||+.+|++|
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999987532110 001111233456788999999987666654 469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 748 FMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 748 llDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++.|++++
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~-~G~i~~~~~~~~ 231 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLK-DGRIVFDGPPAE 231 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEeecCHHH
Confidence 999999999999999999999999764 899999999986 5666889998887 599999998643
No 107
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=8.5e-39 Score=343.65 Aligned_cols=206 Identities=28% Similarity=0.411 Sum_probs=174.1
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTY-------------GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEE-------------CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 567777643 23579999999999999999999999999999999999877 569999999987643
Q ss_pred -ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH
Q 001048 655 -HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733 (1174)
Q Consensus 655 -~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 733 (1174)
...++.++|++|++.+++.+||+||+.+....+ .. ..++++++++.+++.+..++.++ .||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKVK-----GFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhHh-----hCCHHHHHH
Confidence 233557899999998888999999998875432 11 13457788999999877776543 699999999
Q ss_pred HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 734 v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ .+.+.+|+++++. +|++++.|
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~-~g~i~~~g 208 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIIN-KGKLIEEG 208 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 99999999999999999999999999999999999999877899999999975 5666788888886 58998765
No 108
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7e-39 Score=357.07 Aligned_cols=204 Identities=23% Similarity=0.331 Sum_probs=174.1
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---c----ccceEEEEccCCC
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---T----FARISGYCEQNDI 669 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~Q~~~ 669 (1174)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 45679999999999999999999999999999999999887 5689999999876431 1 1356899999999
Q ss_pred CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEE
Q 001048 670 HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 749 (1174)
Q Consensus 670 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illl 749 (1174)
+++.+||+||+.+..... ........++++++++.++|.+..++.++ .||||||||++|||||+.+|++|||
T Consensus 113 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888999999999875432 12233445678889999999877777654 6999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 750 DEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 750 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|+++++. +|++++.|+++
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~-~G~i~~~g~~~ 246 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMK-DGRLVQVGTPE 246 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEeCCHH
Confidence 9999999999999999999999754 899999999975 5667789888886 59999999864
No 109
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.5e-38 Score=344.32 Aligned_cols=221 Identities=34% Similarity=0.630 Sum_probs=180.1
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC-CeEEEEEEECCeeC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG-GIIEGDIRIGGYPK 652 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 652 (1174)
+.|+|+++..... +..+++|+|+||++++||+++|+||||||||||+|+|+|..++ .+.+|+|.++|+++
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 5678888765311 0136899999999999999999999999999999999998751 23589999999987
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHH-HHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNE-VLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
.....++.++|++|++.+++.+||+||+.++.....+.........+++++ .++.+++.+..++.+ +.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHH
Confidence 544456779999999999999999999998765432221122222334555 888888877666654 46999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++..++.+.+|+++++. +|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~-~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLS-SGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEe-CCEEEecC
Confidence 999999999999999999999999999999999999999987799999999997446888999999987 58998865
No 110
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1e-37 Score=393.51 Aligned_cols=210 Identities=26% Similarity=0.347 Sum_probs=177.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||+|.++ ..++++|+|+|++++|||.+||+||||||||||+|+|+|.++ |.+|+|.+||+++
T Consensus 451 ~I~~~nvsf~Y~-----------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYR-----------PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcC-----------CCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEc
Confidence 699999999763 123579999999999999999999999999999999999988 5699999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------CcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-------GIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~ 722 (1174)
.+ ..+++.+|||+|++.++ +.|++|||.++.. .+. +.+.++++..++. +..||.+|+.|
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf-~gTI~eNi~~~~~------~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~G 586 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLM-SGSIFENIAGGAP------LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEGG 586 (686)
T ss_pred CcCCHHHHHhccEEEccCCccC-cccHHHHHhcCCC------CCH----HHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 54 35678899999998876 5699999987531 222 2344555555543 45688898766
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
.+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ ++|+|++||+++ ..+.+|+++++. +
T Consensus 587 -~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~-~ 659 (686)
T TIGR03797 587 -GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLD-A 659 (686)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEE-C
Confidence 469999999999999999999999999999999999999999999886 589999999974 567899999997 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 660 G~iv~~G~~~~ 670 (686)
T TIGR03797 660 GRVVQQGTYDE 670 (686)
T ss_pred CEEEEECCHHH
Confidence 99999999754
No 111
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.9e-38 Score=361.04 Aligned_cols=232 Identities=19% Similarity=0.259 Sum_probs=185.6
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+.............+...+++||||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEE
Confidence 358899999876432110000001123579999999999999999999999999999999999887 568999999998
Q ss_pred CCcc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCC
Q 001048 652 KVQH------TFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPG 722 (1174)
Q Consensus 652 ~~~~------~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 722 (1174)
+... ..++.++||+|++ .++|.+||.||+.+...... ...++++..+++.++++.+++. +..++.
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~----- 158 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY----- 158 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----
Confidence 6432 2356799999997 57889999999998754321 1234555667788999999994 344554
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+++|||||||||+|||||+.+|++|++||||+|||..++..++++|+++.++ |.|+|++||+++ .+.+.+|++++|.
T Consensus 159 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~- 236 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMY- 236 (331)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 3479999999999999999999999999999999999999999999999865 999999999975 4556788888886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|+.++
T Consensus 237 ~G~ive~g~~~~ 248 (331)
T PRK15079 237 LGHAVELGTYDE 248 (331)
T ss_pred CCEEEEEcCHHH
Confidence 599999998754
No 112
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-38 Score=349.07 Aligned_cols=212 Identities=28% Similarity=0.405 Sum_probs=178.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADY-------------GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEe-------------CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 5678887743 23579999999999999999999999999999999999877 56899999999864
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH
Q 001048 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733 (1174)
Q Consensus 654 ~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 733 (1174)
. ..+.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+++.+..++.. ..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHH
Confidence 3 2345799999998888899999998865432 2233444567889999999987666654 3699999999
Q ss_pred HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec-CcEEEEEcCC
Q 001048 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN-GGRIIYFGPL 811 (1174)
Q Consensus 734 v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~v~~G~~ 811 (1174)
++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ .+.+.+|+++++.+ +|++++.++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999864 5899999999975 56778899988874 5999998875
No 113
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.9e-38 Score=348.67 Aligned_cols=215 Identities=24% Similarity=0.362 Sum_probs=180.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~-------------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHF-------------GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEE-------------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5678887754 23579999999999999999999999999999999999876 56899999998864
Q ss_pred c-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 654 Q-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 654 ~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
. ...++.++|++|++.+++.+||+||+.++.... ......+..++++++++.+|+++..+..+ +.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 3 123567899999998888999999998864211 12233445567889999999987666654 46999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFID-KGRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEee
Confidence 9999999999999999999999999999999999999999999877999999999975 5566788888886 5999999
Q ss_pred cCCC
Q 001048 809 GPLG 812 (1174)
Q Consensus 809 G~~~ 812 (1174)
|+.+
T Consensus 218 g~~~ 221 (240)
T PRK09493 218 GDPQ 221 (240)
T ss_pred CCHH
Confidence 9864
No 114
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=9.7e-39 Score=342.24 Aligned_cols=192 Identities=28% Similarity=0.413 Sum_probs=163.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCC-CCCCCCHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDI-HSPNITVE 677 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~-~~~~lTv~ 677 (1174)
+++|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.....++.++|++|++. .++.+|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 579999999999999999999999999999999999877 569999999988644344567999999864 34568999
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCC
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD 757 (1174)
||+.++.... . ...++++++++.+++.+..++.++ .||||||||++|||||+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL---D----AGNEQAETVLKDLDLYALKERHPL-----SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc---C----ccHHHHHHHHHHcCCchhcCCCch-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998864321 1 112457889999999887777653 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 758 ARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 758 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLA-NGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEC
Confidence 99999999999999877999999999975 5666789988886 58864
No 115
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-38 Score=358.47 Aligned_cols=220 Identities=21% Similarity=0.317 Sum_probs=180.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+.... .....+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|++..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecc
Confidence 77889998653110 012369999999999999999999999999999999999887 46899999987541
Q ss_pred c---------------------------ccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Q 001048 654 Q---------------------------HTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVL 705 (1174)
Q Consensus 654 ~---------------------------~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l 705 (1174)
. ...++.+|||+|++ ..++..||+||+.|+.... ..+.++..+++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 0 12356799999985 3445679999999875432 234555667789999
Q ss_pred HHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 001048 706 QTIELD-GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQ 784 (1174)
Q Consensus 706 ~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 784 (1174)
+.+||. +..++.. ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 5666654 4699999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 785 PSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 785 ~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
++ .+.+.+|+++++. +|++++.|++++
T Consensus 225 ~~-~~~~~adrv~vl~-~G~i~~~g~~~~ 251 (305)
T PRK13651 225 LD-NVLEWTKRTIFFK-DGKIIKDGDTYD 251 (305)
T ss_pred HH-HHHHhCCEEEEEE-CCEEEEECCHHH
Confidence 75 5678899998886 599999999754
No 116
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-38 Score=349.38 Aligned_cols=202 Identities=28% Similarity=0.410 Sum_probs=172.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 469999999999999999999999999999999999877 568999999987643 233557899999999998999
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC--cccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG--IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
|+||+.++.... .....+..+.++++++.+++.+ ..++.+ +.|||||||||+|||||+.+|++|+|||||
T Consensus 92 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 999999875432 2233444567889999999985 555543 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 754 SGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++.|+++
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 221 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMK-NGEIVQVGTPD 221 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEecCHH
Confidence 999999999999999999865 899999999975 5677889888886 59999998864
No 117
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=2.6e-38 Score=350.07 Aligned_cols=215 Identities=28% Similarity=0.385 Sum_probs=180.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 77888887542 3469999999999999999999999999999999999877 56899999998764
Q ss_pred c-----------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCC
Q 001048 654 Q-----------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPG 722 (1174)
Q Consensus 654 ~-----------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 722 (1174)
. ...++.++|++|++.+++.+|++||+.++..... ........++++++++.+++.+..|+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 142 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP---- 142 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh----
Confidence 2 1234578999999988888999999988643111 1233444567888999999987666654
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +
T Consensus 143 -~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~-~ 219 (250)
T PRK11264 143 -RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMD-Q 219 (250)
T ss_pred -hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-C
Confidence 469999999999999999999999999999999999999999999999877999999999975 5667789888886 5
Q ss_pred cEEEEEcCCC
Q 001048 803 GRIIYFGPLG 812 (1174)
Q Consensus 803 G~~v~~G~~~ 812 (1174)
|++++.|+++
T Consensus 220 G~i~~~~~~~ 229 (250)
T PRK11264 220 GRIVEQGPAK 229 (250)
T ss_pred CEEEEeCCHH
Confidence 8999998863
No 118
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.1e-38 Score=351.54 Aligned_cols=219 Identities=26% Similarity=0.317 Sum_probs=178.3
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. .++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 56777776431 13569999999999999999999999999999999999887 56899999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhcc-----CCCCCHHHHHHHHHHHHHHcCCCCcccccccCCC
Q 001048 654 QH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRL-----STQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPG 722 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 722 (1174)
.. ..++.++|++|++.+++.+||+||+.++..... .......+..++++++++.+++.+..++.+
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 143 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---- 143 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 21 235679999999988899999999987531100 000112234566888999999987666654
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ .+.+.+|+++++.
T Consensus 144 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~- 220 (243)
T TIGR02315 144 -DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLK- 220 (243)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEE-
Confidence 469999999999999999999999999999999999999999999999764 899999999975 5667889988886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 221 ~G~i~~~~~~~~ 232 (243)
T TIGR02315 221 AGEIVFDGAPSE 232 (243)
T ss_pred CCEEEecCCHHH
Confidence 589999998643
No 119
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.3e-38 Score=346.14 Aligned_cols=200 Identities=26% Similarity=0.416 Sum_probs=168.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc----ccceEEEEccCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT----FARISGYCEQNDIHSPNI 674 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~Q~~~~~~~l 674 (1174)
+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.... .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 479999999999999999999999999999999999887 56899999998764321 245689999999999999
Q ss_pred CHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHc-CCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 675 TVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI-ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
|++||+.++..... ..+..+.++++++.+ ++.+..++.+ +.||||||||++|||||+.+|++|+|||||
T Consensus 91 t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 91 TVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred cHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99999998754321 122344566777777 4666556554 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 754 SGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|++++.|+++
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 217 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLE-RGRVVLEGTAA 217 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEee-CCeEEEeCCHH
Confidence 999999999999999999877899999999975 5677789888886 59999998753
No 120
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.3e-39 Score=325.62 Aligned_cols=214 Identities=24% Similarity=0.408 Sum_probs=193.6
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
+++++|+.+ .+++.+++|+||+++|||+++++|||||||||++++|.|..+ +++|+|.++|.+++
T Consensus 3 L~ie~vtK~-------------Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~ 67 (300)
T COG4152 3 LEIEGVTKS-------------FGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLS 67 (300)
T ss_pred eEEecchhc-------------cCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchh
Confidence 667777653 356789999999999999999999999999999999999988 56999999999876
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH
Q 001048 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733 (1174)
Q Consensus 654 ~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 733 (1174)
.. .+.+|||.|.+..+++.+||.|.|.|.+.++ ++++++.++.++.+|+.+++.+....++. +||.|++|+
T Consensus 68 ~~-~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk-----~LSKGnqQK 138 (300)
T COG4152 68 QE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIK-----ELSKGNQQK 138 (300)
T ss_pred hh-hhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHH-----HhhhhhhHH
Confidence 43 4567899999999999999999999999887 56788888899999999999988877764 699999999
Q ss_pred HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 734 v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
+.+-.+++++|++++||||+|||||.+.+.+.+.+.+++++|.|||+++|+++ .+.++||++++|. +|+.|.+|+...
T Consensus 139 IQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~-kG~~V~~G~v~~ 216 (300)
T COG4152 139 IQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLK-KGQTVLYGTVED 216 (300)
T ss_pred HHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheec-CCceEEeccHHH
Confidence 99999999999999999999999999999999999999999999999999986 7888999998886 599999999753
No 121
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.5e-38 Score=341.74 Aligned_cols=207 Identities=27% Similarity=0.391 Sum_probs=173.3
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 56788877541 13479999999999999999999999999999999999876 56899999998864
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 QH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ..++.++|++|++.+++.+|++||+.++...+ ........++++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 31 23567899999998888999999999875432 1233344567889999999987666654 3699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++.+ |+
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~ 214 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDD-GR 214 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecC-CC
Confidence 99999999999999999999999999999999999999999999777999999999975 56667898888864 53
No 122
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-39 Score=339.67 Aligned_cols=203 Identities=24% Similarity=0.334 Sum_probs=183.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc------c-ccceEEEEccCCCCCC
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH------T-FARISGYCEQNDIHSP 672 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~-~~~~~~~v~Q~~~~~~ 672 (1174)
.-++|+|++|+.||++.|||-||||||||+++|.++.+ |++|+|+++|.++... . +++.+++|+|+..++|
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 46899999999999999999999999999999999988 6799999999986431 2 3467899999999999
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCC
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 752 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 752 (1174)
+.||.||..|+..++ +.+++++++++.+.++.+||++..+... ++|||||||||.+||||+.+|+||++|||
T Consensus 120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 999999999998776 5678899999999999999999988874 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcc
Q 001048 753 TSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQH 814 (1174)
Q Consensus 753 tsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~ 814 (1174)
+|+|||--+.++++.|.+|.++ ++|||++|||++ +.+..-|++.+|. +|++|..|++++.
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~eI 252 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPEEI 252 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHHHH
Confidence 9999999999999999999765 899999999997 7788888888885 6999999999763
No 123
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-38 Score=357.44 Aligned_cols=219 Identities=24% Similarity=0.331 Sum_probs=180.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+.... ...+++|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 77899988663110 012469999999999999999999999999999999999887 56899999999864
Q ss_pred c-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCC
Q 001048 654 Q-------HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVN 724 (1174)
Q Consensus 654 ~-------~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 724 (1174)
. ...++.+|||+|++. .+...||+||+.|+.... ..+..+..++++++++.++|. +..++.+ +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP-----F 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----c
Confidence 2 134567999999862 334579999999875422 234445556789999999996 5556654 4
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.+|+++++. +|
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~-~G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH-KG 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 69999999999999999999999999999999999999999999999765 999999999975 5677889998886 59
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++++.|+++
T Consensus 223 ~i~~~g~~~ 231 (290)
T PRK13634 223 TVFLQGTPR 231 (290)
T ss_pred EEEEECCHH
Confidence 999999864
No 124
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-38 Score=353.07 Aligned_cols=216 Identities=26% Similarity=0.348 Sum_probs=181.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.++ .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 378899987542 12469999999999999999999999999999999999887 5689999999986
Q ss_pred Ccc---cccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQH---TFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~~---~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
... ..++.+||++|++. .++..||.||+.|+.... ..+..+..++++++++.++|.+..++.+. .|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPY-----HLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChh-----hCCH
Confidence 432 23467999999863 456789999999874322 23344455678899999999877777653 6999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~-~G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLK-EGRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999975 4667889998886 5999999
Q ss_pred cCCC
Q 001048 809 GPLG 812 (1174)
Q Consensus 809 G~~~ 812 (1174)
|+++
T Consensus 220 g~~~ 223 (274)
T PRK13647 220 GDKS 223 (274)
T ss_pred CCHH
Confidence 9864
No 125
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-38 Score=318.11 Aligned_cols=218 Identities=26% Similarity=0.411 Sum_probs=182.1
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++.+|++|.+. ++.+|++||++++|||++||+||||||||||||.|+|... |.+|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChh
Confidence 56788888653 5789999999999999999999999999999999999887 45899999999875
Q ss_pred cc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 654 QH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 654 ~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
.. ...+..+.+||+..+-+..||+|-+.++..-.. ......+..+.++++++..++.+.+.+.. +.|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~-~g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHR-SGREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccc-cCCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 42 345667999999888888999999999853221 11222345556788999999998887754 4699999
Q ss_pred HHHHHHHHHhhc------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 731 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 731 rqRv~ia~al~~------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
||||.+||.|++ ++++|+||||||+||...+..++++.++++++|..|+++.||++. ...++|++++|. +||
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~-~Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLH-QGR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeee-CCe
Confidence 999999999976 446999999999999999999999999999999999999999874 456677777775 699
Q ss_pred EEEEcCCCcc
Q 001048 805 IIYFGPLGQH 814 (1174)
Q Consensus 805 ~v~~G~~~~~ 814 (1174)
++..|++++.
T Consensus 219 v~a~g~p~~v 228 (259)
T COG4559 219 VIASGSPQDV 228 (259)
T ss_pred EeecCCHHHh
Confidence 9999999764
No 126
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.4e-38 Score=341.98 Aligned_cols=195 Identities=25% Similarity=0.367 Sum_probs=166.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc------cccceEEEEccCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH------TFARISGYCEQNDIHSP 672 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~Q~~~~~~ 672 (1174)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++... ..++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 469999999999999999999999999999999999876 5689999999876431 23567999999999999
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCC
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 752 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 752 (1174)
.+|++||+.+....+ ....++..++++++++.+++.+..++.. .+||||||||++|||||+.+|++++||||
T Consensus 92 ~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 92 DRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999999875432 1233444567888999999987766654 36999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 753 TSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 753 tsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
|+|||+.++..+.+.|++++++|+|+|++||+++ .+.+.+|+++++. +|++
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~-~G~~ 214 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALE-RGKL 214 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCcC
Confidence 9999999999999999999777999999999975 5566789888886 4653
No 127
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-38 Score=358.20 Aligned_cols=219 Identities=25% Similarity=0.356 Sum_probs=180.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+.... ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 589999998763110 012469999999999999999999999999999999999987 5689999999875
Q ss_pred Cc-------------------ccccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC
Q 001048 653 VQ-------------------HTFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD 711 (1174)
Q Consensus 653 ~~-------------------~~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 711 (1174)
.. ...++.++||+|++ .++ ..||+||+.++.... ..+.++..++++++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF-KDTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhccc-cchHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 12456799999986 344 469999998875321 234445556788999999996
Q ss_pred -CcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHH
Q 001048 712 -GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIF 790 (1174)
Q Consensus 712 -~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~ 790 (1174)
+..++.. .+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.
T Consensus 167 ~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 4555443 469999999999999999999999999999999999999999999999877999999999875 466
Q ss_pred HHhcceeEEecCcEEEEEcCCC
Q 001048 791 EAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 791 ~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
+.+|+++++. +|++++.|+++
T Consensus 241 ~~adri~vl~-~G~i~~~g~~~ 261 (320)
T PRK13631 241 EVADEVIVMD-KGKILKTGTPY 261 (320)
T ss_pred HhCCEEEEEE-CCEEEEeCCHH
Confidence 7889998886 59999999874
No 128
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3.3e-38 Score=351.88 Aligned_cols=216 Identities=21% Similarity=0.309 Sum_probs=181.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ |.+|+|.++|+++
T Consensus 7 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTR-------------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 48899998754 23579999999999999999999999999999999999887 5689999999876
Q ss_pred Ccc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 001048 653 VQH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726 (1174)
Q Consensus 653 ~~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 726 (1174)
... ..++.++|++|++.+++.+||.||+.+...... ..+.....+++.++++.+++.+..++.+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 134568999999988889999999988643211 1233334556788899999988777765 369
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~-~G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVA-DKKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999765 899999999975 5667789888886 5999
Q ss_pred EEEcCCC
Q 001048 806 IYFGPLG 812 (1174)
Q Consensus 806 v~~G~~~ 812 (1174)
++.|+++
T Consensus 223 ~~~g~~~ 229 (269)
T PRK11831 223 VAHGSAQ 229 (269)
T ss_pred EEeCCHH
Confidence 9999864
No 129
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-38 Score=355.55 Aligned_cols=220 Identities=27% Similarity=0.366 Sum_probs=180.5
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+.... ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67889988663110 011369999999999999999999999999999999999887 56999999999864
Q ss_pred c-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCC
Q 001048 654 Q-------HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVN 724 (1174)
Q Consensus 654 ~-------~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 724 (1174)
. ...++.+|||+|++. .+...||.||+.|+.... ..+..+..+++.++++.++|. +..++.+ +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~ 143 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSP-----F 143 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCc-----c
Confidence 1 124567999999862 334469999999875432 234455667788999999995 4555543 4
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|+
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~-~G~ 221 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLE-KGH 221 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-CCE
Confidence 79999999999999999999999999999999999999999999999877999999999975 5667889998886 599
Q ss_pred EEEEcCCCc
Q 001048 805 IIYFGPLGQ 813 (1174)
Q Consensus 805 ~v~~G~~~~ 813 (1174)
+++.|++++
T Consensus 222 i~~~g~~~~ 230 (288)
T PRK13643 222 IISCGTPSD 230 (288)
T ss_pred EEEECCHHH
Confidence 999999754
No 130
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-38 Score=354.39 Aligned_cols=217 Identities=24% Similarity=0.339 Sum_probs=182.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ |.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKE----------DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCC----------CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 3788999886521 012469999999999999999999999999999999999887 5699999999987
Q ss_pred Cc---ccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQ---HTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.. ...++.++|++|++ ..++..||+||+.++.... ..+.++..++++++++.++|.+..+... ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 23456789999997 3667889999999875432 2345555677899999999987777664 36999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..+|+++++. +|+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~-~G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMK-NGQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999975 44 6788888886 599999
Q ss_pred EcCCC
Q 001048 808 FGPLG 812 (1174)
Q Consensus 808 ~G~~~ 812 (1174)
.|+++
T Consensus 221 ~g~~~ 225 (279)
T PRK13650 221 TSTPR 225 (279)
T ss_pred ECCHH
Confidence 99864
No 131
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-38 Score=362.76 Aligned_cols=214 Identities=29% Similarity=0.464 Sum_probs=179.7
Q ss_pred ccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 571 PLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
++.++.+|+++.++ + ++++++|+|+++++|+.+||+|+||||||||+++|+|..+ +++|+|.+||.
T Consensus 318 ~~ei~~~~l~~~y~-----------~-g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng~ 383 (559)
T COG4988 318 PIEISLENLSFRYP-----------D-GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGI 383 (559)
T ss_pred CceeeecceEEecC-----------C-CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCc
Confidence 45677789998643 2 2389999999999999999999999999999999999988 56999999998
Q ss_pred eCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC------CcccccccCC
Q 001048 651 PKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD------GIKDSLVGLP 721 (1174)
Q Consensus 651 ~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~------~~~~~~~~~~ 721 (1174)
+..+ ..+++.++||+|++.+++ .|++|||.++.. +.++ +.+.++++..++. +..|+.+|+.
T Consensus 384 ~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~-----~~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige~ 453 (559)
T COG4988 384 DLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARP-----DASD----EEIIAALDQAGLLEFVPKPDGLDTVIGEG 453 (559)
T ss_pred cccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCC-----cCCH----HHHHHHHHHhcHHHhhcCCCcccchhccC
Confidence 7643 468899999999987764 699999998631 1222 3345555555553 4568888876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
| ++|||||+|||++||||+++++++++||||++||.++++.|.+.|.++++ ++|||++|||+ .....+|++++++
T Consensus 454 G-~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl--~~~~~~D~I~vld- 528 (559)
T COG4988 454 G-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRL--EDAADADRIVVLD- 528 (559)
T ss_pred C-CCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcCh--HHHhcCCEEEEec-
Confidence 6 57999999999999999999999999999999999999999999999987 59999999987 4567789998886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|.+++
T Consensus 529 ~G~l~~~g~~~~ 540 (559)
T COG4988 529 NGRLVEQGTHEE 540 (559)
T ss_pred CCceeccCCHHH
Confidence 599999999865
No 132
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=5.8e-38 Score=343.78 Aligned_cols=213 Identities=28% Similarity=0.429 Sum_probs=177.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAY-------------GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 5677887754 23579999999999999999999999999999999999877 56899999998764
Q ss_pred cc--cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 654 QH--TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 654 ~~--~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
.. ..++.++|++|++.+++.+|++||+.+....+ .....+..+.++++++.+|+.+..++.++ .||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVR-----ELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHH
Confidence 32 22356899999988888999999998865432 22333445667889999999877776653 6999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|+|++||+++ .+ ..+|+++++. +|++++.|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~-~G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLH-RGRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEe-CCeEEEeCC
Confidence 999999999999999999999999999999999999999975 5899999999986 34 4588888886 589999988
Q ss_pred CC
Q 001048 811 LG 812 (1174)
Q Consensus 811 ~~ 812 (1174)
++
T Consensus 216 ~~ 217 (236)
T TIGR03864 216 AA 217 (236)
T ss_pred HH
Confidence 63
No 133
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=6.1e-38 Score=340.45 Aligned_cols=209 Identities=23% Similarity=0.307 Sum_probs=174.5
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 56788887541 13479999999999999999999999999999999999887 56999999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 QH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ..++.++|++|++.+++.+|++||+.+....+ .....+..+.++++++.+++.+..++.. ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCC
Confidence 31 13567899999998888999999999875432 2233444556788999999987666654 4699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ ++.+.+|+++++. +|+++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~ 216 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLS-DGHLH 216 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEc
Confidence 99999999999999999999999999999999999999999999877899999999975 5666778888886 58874
No 134
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.6e-37 Score=384.08 Aligned_cols=212 Identities=26% Similarity=0.392 Sum_probs=175.9
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++||++... +++++|+|+|++++|||.+||+||||||||||+++|+|.+ + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3599999986431 2357999999999999999999999999999999999987 4 48999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~ 721 (1174)
+.+ ..+++.++||+|++.+| +.|++|||.++. ++.+.+ .++++++..+ +++..||.+|+.
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF-~~TI~eNI~~g~-----~~~~~e----ei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLP-HGTLRDNVLLGN-----PDASDE----QLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCC-CcCHHHHhhcCC-----CCCCHH----HHHHHHHHhCHHHHHHhcccccccccccC
Confidence 754 35678899999998776 569999999862 122332 2333444333 445679999987
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|. .||||||||++|||||+++|+||+||||||+||+.+++.|.+.|+++. +++|+|++||+++ ..+.+|+++++.
T Consensus 483 G~-~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~- 557 (588)
T PRK11174 483 AA-GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQ- 557 (588)
T ss_pred CC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEe-
Confidence 65 599999999999999999999999999999999999999999999885 4899999999974 567899999997
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|+.++
T Consensus 558 ~G~i~e~G~~~e 569 (588)
T PRK11174 558 DGQIVQQGDYAE 569 (588)
T ss_pred CCeEeecCCHHH
Confidence 599999999754
No 135
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-38 Score=339.81 Aligned_cols=208 Identities=32% Similarity=0.504 Sum_probs=174.1
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+++|+||++++| +++|+||||||||||+++|+|..+ +.+|+|.++|+++..
T Consensus 2 ~~~~~~~~~-------------~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRY-------------GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEE-------------CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCcccc
Confidence 567777643 2346999999999999 999999999999999999999877 568999999987643
Q ss_pred c--cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 655 H--TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 655 ~--~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
. ..++.++|++|++.+++.+||+||+.+....+ .....+..+.++++++.+++.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHH
Confidence 2 23567899999999888999999999865433 1223334566888999999987767654 369999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|+++++. +|++++.|
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~-~g~i~~~g 211 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 99999999999999999999999999999999999999976 599999999975 4556788888886 58998765
No 136
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-38 Score=346.04 Aligned_cols=215 Identities=24% Similarity=0.370 Sum_probs=180.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~-------------~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAY-------------KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEe-------------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 6778888753 23579999999999999999999999999999999999876 56899999998864
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 654 QH----TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 654 ~~----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
.. ..++.++|++|++.+++.+||+||+.+...... ....++..++++++++.+++.+..+... +.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCHH
Confidence 32 134568999999988888999999987643221 1233344567888999999987666554 469999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~-~G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVS-QGHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEe-CCeEEeeC
Confidence 999999999999999999999999999999999999999999877999999999975 6778889888886 58999999
Q ss_pred CCC
Q 001048 810 PLG 812 (1174)
Q Consensus 810 ~~~ 812 (1174)
+++
T Consensus 220 ~~~ 222 (241)
T PRK10895 220 TPT 222 (241)
T ss_pred CHH
Confidence 864
No 137
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-38 Score=353.48 Aligned_cols=220 Identities=24% Similarity=0.334 Sum_probs=180.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+.... ..++.+|+|+|+++++||+++|+||||||||||+++|+|..+ |.+|+|.++|+++
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 367888887542100 002469999999999999999999999999999999999887 5699999999876
Q ss_pred Cc-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCC
Q 001048 653 VQ-------HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGV 723 (1174)
Q Consensus 653 ~~-------~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 723 (1174)
.. ...++.++|++|++. .++.+||.||+.++.... ....++..++++++++.++|. +..++.++
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---- 144 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPF---- 144 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcc----
Confidence 32 123457899999862 334689999998865432 233445566788999999996 56666653
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|
T Consensus 145 -~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~-~G 221 (287)
T PRK13641 145 -ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLE-HG 221 (287)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 69999999999999999999999999999999999999999999999877999999999975 5677889998886 59
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++++.|+++
T Consensus 222 ~i~~~g~~~ 230 (287)
T PRK13641 222 KLIKHASPK 230 (287)
T ss_pred EEEEeCCHH
Confidence 999999864
No 138
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=7.8e-38 Score=345.23 Aligned_cols=215 Identities=27% Similarity=0.370 Sum_probs=177.0
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECCe
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGGY 650 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~ 650 (1174)
++++|+++.+. ++.+++|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|+
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56788887542 346999999999999999999999999999999999987631 12899999999
Q ss_pred eCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----CcccccccCC
Q 001048 651 PKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD----GIKDSLVGLP 721 (1174)
Q Consensus 651 ~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~~ 721 (1174)
++.. ...++.++|++|++.+++ .|++||+.+....+. .....+..+.++++++.+++. +..++.+
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 142 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSA--- 142 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc---
Confidence 8642 123567999999988888 999999998754321 122344456788899999997 4444443
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+|+++++.
T Consensus 143 --~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~- 217 (247)
T TIGR00972 143 --LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFY- 217 (247)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEE-
Confidence 46999999999999999999999999999999999999999999999977 499999999975 5667889888886
Q ss_pred CcEEEEEcCCC
Q 001048 802 GGRIIYFGPLG 812 (1174)
Q Consensus 802 ~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 218 ~G~i~~~~~~~ 228 (247)
T TIGR00972 218 DGELVEYGPTE 228 (247)
T ss_pred CCEEEEeCCHH
Confidence 58999999864
No 139
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-38 Score=351.73 Aligned_cols=217 Identities=27% Similarity=0.384 Sum_probs=182.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 488999998642 13469999999999999999999999999999999999887 5699999999986
Q ss_pred Cc-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 001048 653 VQ-----HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726 (1174)
Q Consensus 653 ~~-----~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 726 (1174)
.. ...++.+||++|++. .++..||+||+.++.... ..+..+..++++++++.++|.+..++.. +.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccC
Confidence 31 234567999999863 345689999998865322 2334445567889999999988777765 469
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~-~G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMK-EGRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999875 899999999975 4556789888886 5899
Q ss_pred EEEcCCCc
Q 001048 806 IYFGPLGQ 813 (1174)
Q Consensus 806 v~~G~~~~ 813 (1174)
++.|++++
T Consensus 221 ~~~g~~~~ 228 (283)
T PRK13636 221 ILQGNPKE 228 (283)
T ss_pred EEeCCHHH
Confidence 99998753
No 140
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=7.8e-38 Score=339.65 Aligned_cols=211 Identities=23% Similarity=0.362 Sum_probs=172.3
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+... ...+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 5677887754210 012469999999999999999999999999999999999877 56899999998864
Q ss_pred ccc------cc-ceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 001048 654 QHT------FA-RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726 (1174)
Q Consensus 654 ~~~------~~-~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 726 (1174)
... .+ +.++|++|++.+++.+|++||+.+....+ .....+..+++.++++.+++.+..++.. ..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 311 12 56899999998888999999999865432 1223334556788999999987766654 369
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ .+ +.+|+++++. +|++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~-~G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMK-DGQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEe-CCEe
Confidence 999999999999999999999999999999999999999999999764 899999999975 34 5578888886 5887
Q ss_pred E
Q 001048 806 I 806 (1174)
Q Consensus 806 v 806 (1174)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 5
No 141
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-38 Score=353.24 Aligned_cols=219 Identities=22% Similarity=0.364 Sum_probs=180.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+.... ...+.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 378889988653110 012469999999999999999999999999999999999887 5689999999886
Q ss_pred Cc-------ccccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCC
Q 001048 653 VQ-------HTFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~-------~~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 722 (1174)
.. ...++.+|||+|++ .+++ .||.||+.++.... ..+..+..++++++++.+||. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---- 143 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSP---- 143 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc----
Confidence 42 13456799999985 3444 69999999875322 234445566788999999996 5556543
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+.+|+++++.
T Consensus 144 -~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~- 220 (286)
T PRK13646 144 -FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMK- 220 (286)
T ss_pred -ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-
Confidence 46999999999999999999999999999999999999999999999976 4899999999975 5667889998887
Q ss_pred CcEEEEEcCCC
Q 001048 802 GGRIIYFGPLG 812 (1174)
Q Consensus 802 ~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 221 ~G~i~~~g~~~ 231 (286)
T PRK13646 221 EGSIVSQTSPK 231 (286)
T ss_pred CCEEEEECCHH
Confidence 59999999864
No 142
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-38 Score=363.46 Aligned_cols=203 Identities=23% Similarity=0.335 Sum_probs=175.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc-------ccceEEEEccCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT-------FARISGYCEQNDIHS 671 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~-------~~~~~~~v~Q~~~~~ 671 (1174)
..+|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.... .++.++|++|++.++
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 458999999999999999999999999999999999887 56899999999864321 135699999999999
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeC
Q 001048 672 PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 751 (1174)
+++||+||+.++...+ ....++..++++++++.++|.+..++.. +.|||||||||+|||||+.+|++|||||
T Consensus 119 ~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 119 PHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999976543 2234445567889999999988777765 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 752 PTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|+++++. +|+++..|++++
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~-~G~i~~~g~~~~ 251 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQ-NGEVVQVGTPDE 251 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEE-CCEEEecCCHHH
Confidence 9999999999999999999975 4899999999975 5677889998886 589999998754
No 143
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-38 Score=344.56 Aligned_cols=206 Identities=21% Similarity=0.292 Sum_probs=176.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 488999988542 3579999999999999999999999999999999999877 5689999999875
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
. ..++.++|++|++.+++.+||+||+.++.. . ...++++++++.+++.+..+..+ ..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 3 345678999999988888999999987521 0 12345778999999987766654 469999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+.+|+++++. +|++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~-~G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIE-EGKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999975 5667789888886 5899988875
No 144
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=5.1e-38 Score=339.16 Aligned_cols=207 Identities=28% Similarity=0.387 Sum_probs=172.9
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+|+++||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSF-------------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEE-------------CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 567777653 23469999999999999999999999999999999999877 568999999987632
Q ss_pred -----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 655 -----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 655 -----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
...++.++|++|++.+++.+|++||+.++..... .....+..++++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 1245679999999988889999999988643111 2233344567888999999987666664 469999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++.+ |++
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~i 213 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GRI 213 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CcC
Confidence 999999999999999999999999999999999999999999877899999999975 56678899988874 653
No 145
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=8.9e-38 Score=341.14 Aligned_cols=216 Identities=25% Similarity=0.322 Sum_probs=171.5
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+... ..+.++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5678888754210 001269999999999999999999999999999999999876 56899999998864
Q ss_pred cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHH-HHHHHHHcCCC-CcccccccCCCC
Q 001048 654 QH------TFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEF-VNEVLQTIELD-GIKDSLVGLPGV 723 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~l~-~~~~~~~~~~~~ 723 (1174)
.. ..++.++|++|++ .+++.+||+||+.+........ ...+..+. ++++++.+++. +..+..+
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 143 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL--SKKEARKEAVLLLLVGVGLPEEVLNRYP----- 143 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHCCCChhHhhCCc-----
Confidence 31 3456799999997 4667899999998865432111 11122222 35788888885 4555544
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++++. +
T Consensus 144 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~ 221 (228)
T cd03257 144 HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMY-A 221 (228)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEe-C
Confidence 369999999999999999999999999999999999999999999999876 899999999975 5556789888886 5
Q ss_pred cEEEEEc
Q 001048 803 GRIIYFG 809 (1174)
Q Consensus 803 G~~v~~G 809 (1174)
|++++.|
T Consensus 222 G~i~~~g 228 (228)
T cd03257 222 GKIVEEG 228 (228)
T ss_pred CEEEecC
Confidence 8988765
No 146
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=9.7e-38 Score=346.44 Aligned_cols=216 Identities=22% Similarity=0.286 Sum_probs=180.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 378899988542 3579999999999999999999999999999999999887 5689999999875
Q ss_pred Cc----------------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcc-c
Q 001048 653 VQ----------------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIK-D 715 (1174)
Q Consensus 653 ~~----------------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~ 715 (1174)
.. ..+++.++|++|++.+++.+||+||+.++..... .....+..+++.++++.+|+.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 1234678999999999889999999987542111 123344566788999999997653 4
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcc
Q 001048 716 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDD 795 (1174)
Q Consensus 716 ~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 795 (1174)
... ..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+
T Consensus 148 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 433 469999999999999999999999999999999999999999999999877999999999975 56667898
Q ss_pred eeEEecCcEEEEEcCCC
Q 001048 796 LVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 796 ~~~l~~~G~~v~~G~~~ 812 (1174)
++++. +|++++.|+.+
T Consensus 222 i~~l~-~G~i~~~~~~~ 237 (257)
T PRK10619 222 VIFLH-QGKIEEEGAPE 237 (257)
T ss_pred EEEEE-CCEEEEeCCHH
Confidence 88886 59999998864
No 147
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=5.4e-37 Score=388.88 Aligned_cols=212 Identities=25% Similarity=0.388 Sum_probs=176.7
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++||+|.++ ..++++|+|+|++|++||.+||+||||||||||+|+|+|.++ |.+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~-----------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYS-----------PLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecC-----------CCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEe
Confidence 3699999999653 223579999999999999999999999999999999999987 569999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~ 721 (1174)
+.+ ..+++.++||+|++.++ +.|++|||.++. + ..+. +.+.++++..++ .+..||.+|+.
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf-~gTi~eNi~l~~----~-~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLF-EGTVRDNLTLWD----P-TIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhh-hccHHHHhhCCC----C-CCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 753 35678899999998776 579999998742 1 2222 234444554444 34568889876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
| .+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|++ .++|+|++||+++ ....+|+++++.
T Consensus 613 G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~- 685 (710)
T TIGR03796 613 G-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLE- 685 (710)
T ss_pred C-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEe-
Confidence 6 46999999999999999999999999999999999999999999986 4899999999974 467799999997
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|+.++
T Consensus 686 ~G~i~~~G~~~~ 697 (710)
T TIGR03796 686 RGKVVQRGTHEE 697 (710)
T ss_pred CCEEEEecCHHH
Confidence 599999999754
No 148
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-38 Score=350.39 Aligned_cols=215 Identities=24% Similarity=0.339 Sum_probs=179.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. +++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 56788887541 12469999999999999999999999999999999999877 56899999999864
Q ss_pred c----ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 654 Q----HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 654 ~----~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
. ...++.++|++|++. .++..|+.||+.+..... ..+..+..++++++++.+++.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 3 123567999999875 366789999998865332 2344455567889999999988777664 36999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++ ..+|+++++. +|++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~-~G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMD-RGKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEE-CCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999975 44 6689888886 5999999
Q ss_pred cCCCc
Q 001048 809 GPLGQ 813 (1174)
Q Consensus 809 G~~~~ 813 (1174)
|++++
T Consensus 217 g~~~~ 221 (274)
T PRK13644 217 GEPEN 221 (274)
T ss_pred CCHHH
Confidence 98643
No 149
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-38 Score=343.82 Aligned_cols=215 Identities=25% Similarity=0.357 Sum_probs=179.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEec
Confidence 367888887542 3479999999999999999999999999999999999877 5689999999875
Q ss_pred Cc---------ccccceEEEEccCCCCCCCCCHHHHHHHHH-hhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCC
Q 001048 653 VQ---------HTFARISGYCEQNDIHSPNITVEESIVFSA-WLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 722 (1174)
.. ...++.++|++|++.+++.+||.||+.+.. ... .....+..+++.++++.+|+.+..++.+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 139 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP---- 139 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh----
Confidence 20 123457899999999999999999997532 221 1223334567888999999987767654
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++ .+.+.+|+++++. +
T Consensus 140 -~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~-~ 216 (242)
T PRK11124 140 -LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYME-N 216 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEE-C
Confidence 369999999999999999999999999999999999999999999999877999999999975 5567789888887 5
Q ss_pred cEEEEEcCCC
Q 001048 803 GRIIYFGPLG 812 (1174)
Q Consensus 803 G~~v~~G~~~ 812 (1174)
|++++.|+++
T Consensus 217 g~i~~~~~~~ 226 (242)
T PRK11124 217 GHIVEQGDAS 226 (242)
T ss_pred CEEEEeCCHH
Confidence 9999999864
No 150
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-38 Score=337.09 Aligned_cols=225 Identities=22% Similarity=0.337 Sum_probs=184.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC-C--CeEEEEEEECCe
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT-G--GIIEGDIRIGGY 650 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~-~--~~~~G~i~~~g~ 650 (1174)
++.+||+.++... .+..++++||||++++||++||+|.|||||||+.+.|.|+.+ + ...+|+|.++|+
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 4667777655432 123579999999999999999999999999999999999876 2 246799999999
Q ss_pred eCCc---c---c-ccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHHHcCCCCcccccccC
Q 001048 651 PKVQ---H---T-FARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQI-DSKTKAEFVNEVLQTIELDGIKDSLVGL 720 (1174)
Q Consensus 651 ~~~~---~---~-~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 720 (1174)
++.. . . +.+.+++++|++ .+.|.+||.+.+.-....+. .. .+++..+++.++++.+|+.+.....-.+
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y 150 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKSY 150 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhhC
Confidence 7532 1 1 235799999996 67899999999887765432 22 3556677889999999998754444334
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
+.+|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.++|+||||+. -+.+.+|++.+|
T Consensus 151 --PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VM 227 (316)
T COG0444 151 --PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVM 227 (316)
T ss_pred --CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEE
Confidence 468999999999999999999999999999999999999999999999986 5999999999986 477888988888
Q ss_pred ecCcEEEEEcCCCc
Q 001048 800 KNGGRIIYFGPLGQ 813 (1174)
Q Consensus 800 ~~~G~~v~~G~~~~ 813 (1174)
. .|++|+.|+.++
T Consensus 228 Y-aG~iVE~g~~~~ 240 (316)
T COG0444 228 Y-AGRIVEEGPVEE 240 (316)
T ss_pred E-CcEEEEeCCHHH
Confidence 7 599999999754
No 151
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.6e-38 Score=392.64 Aligned_cols=215 Identities=30% Similarity=0.451 Sum_probs=179.3
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++|+|++|.++ +++++|+|+||+++|||.+||+||||||||||+|+|.|.++ +.+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~------------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYP------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcC------------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCEe
Confidence 4599999999653 14689999999999999999999999999999999999887 569999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHH-----HHHHHHHcCCCCcccccccCCCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEF-----VNEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
+.. ..+|+.++||+|++.+|. .||+|||.++.. +.++++..+. +++.++ .+++..||.+|+.|.
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~--~lp~g~dt~vge~G~ 464 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEEIEEALKLANAHEFIA--NLPDGYDTIVGERGV 464 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCcccccceecCCCc
Confidence 754 457788999999888766 899999998742 1223222222 233333 345578999997665
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.||||||||++||||++++|++|+||||||+||+.++..+.+.++++. +++|+|+++|+++ . ...+|+++++. +|
T Consensus 465 -~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-t-i~~aD~IiVl~-~G 539 (567)
T COG1132 465 -NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-T-IKNADRIIVLD-NG 539 (567)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-H-HHhCCEEEEEE-CC
Confidence 599999999999999999999999999999999999999999999887 5789999999985 3 45599999997 58
Q ss_pred EEEEEcCCCc
Q 001048 804 RIIYFGPLGQ 813 (1174)
Q Consensus 804 ~~v~~G~~~~ 813 (1174)
++++.|++++
T Consensus 540 ~i~e~G~h~e 549 (567)
T COG1132 540 RIVERGTHEE 549 (567)
T ss_pred EEEEecCHHH
Confidence 9999999865
No 152
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-38 Score=344.14 Aligned_cols=214 Identities=19% Similarity=0.328 Sum_probs=177.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++.
T Consensus 5 ~l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHY-------------GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEee-------------CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 47889998854 23579999999999999999999999999999999999887 5689999999886
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHc-CCCCcccccccCCCCCCCC
Q 001048 653 VQH----TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI-ELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 653 ~~~----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~LS 727 (1174)
... ..++.++|++|++.+++.+||+||+.++.... ...+..+.++++++.+ ++.+..++.. ..||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRA-----GTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCch-----hhCC
Confidence 432 13456999999998888899999998864221 1122334566777777 4655444433 4699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLE-NGHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEe-CCEEEe
Confidence 99999999999999999999999999999999999999999999877999999999975 6778889998887 599999
Q ss_pred EcCCCc
Q 001048 808 FGPLGQ 813 (1174)
Q Consensus 808 ~G~~~~ 813 (1174)
.|++++
T Consensus 218 ~~~~~~ 223 (237)
T PRK11614 218 EDTGDA 223 (237)
T ss_pred eCCHHH
Confidence 998743
No 153
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=6e-37 Score=388.01 Aligned_cols=212 Identities=23% Similarity=0.378 Sum_probs=176.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||+|.++ .++++|+|+|++|++||.+||+||||||||||+|+|+|.++ |.+|+|++||.++
T Consensus 473 ~I~~~~vsf~y~------------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i 538 (708)
T TIGR01193 473 DIVINDVSYSYG------------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSL 538 (708)
T ss_pred cEEEEEEEEEcC------------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEEH
Confidence 699999999652 13579999999999999999999999999999999999987 5699999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~ 722 (1174)
.+ ..+++.+|||+|++.++ +.|++|||.++.. ...+.+ .+.++++..++ ++..||.+|+.|
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf-~gTI~eNi~l~~~----~~~~~~----~i~~a~~~a~l~~~i~~lp~gldt~i~e~G 609 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIF-SGSILENLLLGAK----ENVSQD----EIWAACEIAEIKDDIENMPLGYQTELSEEG 609 (708)
T ss_pred HHcCHHHHHHheEEEecCceeh-hHHHHHHHhccCC----CCCCHH----HHHHHHHHhCCHHHHHhcccccCcEecCCC
Confidence 43 45678899999998876 4699999988621 122222 23444444443 445689998765
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
.+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ +|+|+|++||+++ ..+.+|+++++. +
T Consensus 610 -~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~-~ 683 (708)
T TIGR01193 610 -SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLD-H 683 (708)
T ss_pred -CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEE-C
Confidence 469999999999999999999999999999999999999999999985 4899999999975 567899999997 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 684 G~i~~~G~~~~ 694 (708)
T TIGR01193 684 GKIIEQGSHDE 694 (708)
T ss_pred CEEEEECCHHH
Confidence 99999999743
No 154
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-39 Score=355.86 Aligned_cols=223 Identities=27% Similarity=0.375 Sum_probs=183.0
Q ss_pred CCCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE
Q 001048 568 PFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI 647 (1174)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~ 647 (1174)
......++|+||+|.++ +++++|+||||++.||+.+||+||||+||||+|++|.+..+ ..+|.|.+
T Consensus 532 ~~~~G~i~fsnvtF~Y~------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~i 597 (790)
T KOG0056|consen 532 KVTQGKIEFSNVTFAYD------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSITI 597 (790)
T ss_pred cccCCeEEEEEeEEecC------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEEE
Confidence 34456799999999763 35799999999999999999999999999999999988766 56999999
Q ss_pred CCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 648 GGYPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 648 ~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
||+++.. .+.|+.||.||||..+| +-|+..||.|+..-..+.++..+.+.+.++ -+.++..+..++.+|+.|.+
T Consensus 598 DgqdIrnvt~~SLRs~IGVVPQDtvLF-NdTI~yNIryak~~AsneevyaAAkAA~IH--drIl~fPegY~t~VGERGLk 674 (790)
T KOG0056|consen 598 DGQDIRNVTQSSLRSSIGVVPQDTVLF-NDTILYNIRYAKPSASNEEVYAAAKAAQIH--DRILQFPEGYNTRVGERGLK 674 (790)
T ss_pred cCchHHHHHHHHHHHhcCcccCcceee-cceeeeheeecCCCCChHHHHHHHHHhhHH--HHHhcCchhhhhhhhhcccc
Confidence 9999753 56788999999987765 569999999873221111111111222222 23467889999999998886
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|||||||||+|||+++++|.+++|||.||+||..+++.|...|.++++ ++|.|++.|++| .+. .+|.++++. +|+
T Consensus 675 -LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLS-Tiv-nAD~ILvi~-~G~ 749 (790)
T KOG0056|consen 675 -LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLS-TIV-NADLILVIS-NGR 749 (790)
T ss_pred -cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeeh-hee-cccEEEEEe-CCe
Confidence 999999999999999999999999999999999999999999999986 899999999987 444 567777776 599
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
|++.|..+
T Consensus 750 IvErG~He 757 (790)
T KOG0056|consen 750 IVERGRHE 757 (790)
T ss_pred EeecCcHH
Confidence 99999874
No 155
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-38 Score=350.17 Aligned_cols=216 Identities=26% Similarity=0.365 Sum_probs=181.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~-----------~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYP-----------DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeC-----------CCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 378999988542 113469999999999999999999999999999999999987 5699999999987
Q ss_pred Ccc---cccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQH---TFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~~---~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
... ..++.++|++|++ ..++..||.||+.++.... ....++..++++++++.+||.+..++..+ .|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPH-----RLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCH
Confidence 532 2356799999997 3667789999999875432 22344555678999999999887777653 6999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..+|+++++. +|++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~-~G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMN-KGEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999876 899999999975 34 5689888886 589999
Q ss_pred EcCCC
Q 001048 808 FGPLG 812 (1174)
Q Consensus 808 ~G~~~ 812 (1174)
.|+++
T Consensus 221 ~g~~~ 225 (279)
T PRK13635 221 EGTPE 225 (279)
T ss_pred ECCHH
Confidence 99864
No 156
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=344.94 Aligned_cols=216 Identities=25% Similarity=0.333 Sum_probs=177.1
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~ 648 (1174)
..++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 11 ~~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~ 77 (258)
T PRK14268 11 PQIKVENLNLWY-------------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIE 77 (258)
T ss_pred eeEEEeeeEEEe-------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEEC
Confidence 358899998753 234699999999999999999999999999999999998753 1368999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----ccccccc
Q 001048 649 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVG 719 (1174)
Q Consensus 649 g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 719 (1174)
|+++.. ...++.++|++|++.+++ +|++||+.+..... .....+..++++++++.+++.+ ..++.+
T Consensus 78 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 152 (258)
T PRK14268 78 GEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPA- 152 (258)
T ss_pred CEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh-
Confidence 987632 123567999999988877 89999999875432 1233334456788999988842 234333
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 720 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ .+.+.+|+++++
T Consensus 153 ----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l 226 (258)
T PRK14268 153 ----LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFF 226 (258)
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999865 899999999975 566778988888
Q ss_pred ecCcEEEEEcCCC
Q 001048 800 KNGGRIIYFGPLG 812 (1174)
Q Consensus 800 ~~~G~~v~~G~~~ 812 (1174)
. +|++++.|+++
T Consensus 227 ~-~G~i~~~~~~~ 238 (258)
T PRK14268 227 L-MGELIEFGQTR 238 (258)
T ss_pred E-CCEEEEeCCHH
Confidence 6 59999999863
No 157
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.2e-37 Score=344.77 Aligned_cols=215 Identities=25% Similarity=0.320 Sum_probs=179.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++.
T Consensus 1 i~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRF-------------GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEe-------------CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 3577887754 13479999999999999999999999999999999999877 56899999998763
Q ss_pred cc----------------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCccccc
Q 001048 654 QH----------------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717 (1174)
Q Consensus 654 ~~----------------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 717 (1174)
.. ..++.++|++|++.+++..|+.||+.++.... ......+..+.++++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 21 23567999999999999999999998864211 1223344456788899999998766655
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcce
Q 001048 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 718 ~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
. +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|++
T Consensus 144 ~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 P-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred h-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 4 469999999999999999999999999999999999999999999999865 899999999975 566788999
Q ss_pred eEEecCcEEEEEcCCC
Q 001048 797 VLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 797 ~~l~~~G~~v~~G~~~ 812 (1174)
+++. +|++++.|+.+
T Consensus 218 ~~l~-~G~i~~~g~~~ 232 (252)
T TIGR03005 218 CFFD-KGRIVEQGKPD 232 (252)
T ss_pred EEEE-CCEEEEeCCHH
Confidence 8886 59999999863
No 158
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=377.01 Aligned_cols=214 Identities=25% Similarity=0.377 Sum_probs=178.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|++|.++ ..++++|+|+|+++++||.+||+||||||||||+|+|+|..+ |.+|+|.+||.++
T Consensus 341 ~i~~~~vsf~y~-----------~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 407 (582)
T PRK11176 341 DIEFRNVTFTYP-----------GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHDL 407 (582)
T ss_pred eEEEEEEEEecC-----------CCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEEh
Confidence 599999999653 223579999999999999999999999999999999999987 5689999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~~ 722 (1174)
.. ..+++.++||+|++.+++ .|++|||.++. +...+. ++++++++..+ +++..||.+|+.|
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g 478 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGENG 478 (582)
T ss_pred hhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCCC
Confidence 54 346778999999988765 79999998752 111222 23444555444 4455789998766
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
+.||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++.+ ++|+|++||++ +..+.+|+++++. +
T Consensus 479 -~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~--~~~~~~D~Ii~l~-~ 553 (582)
T PRK11176 479 -VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL--STIEKADEILVVE-D 553 (582)
T ss_pred -CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEE-C
Confidence 46999999999999999999999999999999999999999999999754 79999999997 4578899999997 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 554 g~i~e~g~~~~ 564 (582)
T PRK11176 554 GEIVERGTHAE 564 (582)
T ss_pred CEEEEeCCHHH
Confidence 99999999753
No 159
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=7.1e-38 Score=359.28 Aligned_cols=205 Identities=22% Similarity=0.357 Sum_probs=176.9
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee----CCc---cc---c-cceEEEEc
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP----KVQ---HT---F-ARISGYCE 665 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~----~~~---~~---~-~~~~~~v~ 665 (1174)
+...+|+|+||+|++||+++|+||||||||||+++|+|..+ |.+|+|.++|++ +.. .. . ++.++||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 34678999999999999999999999999999999999887 568999999963 221 11 1 25699999
Q ss_pred cCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCc
Q 001048 666 QNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPS 745 (1174)
Q Consensus 666 Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ 745 (1174)
|++.+++.+||+||+.++.... ..++.+..++++++++.+||.+..|+..+ +|||||||||+|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999986443 23445566788999999999888777654 699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 746 IIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 746 illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
||||||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|++++|. +|+++..|++++
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~-~G~iv~~g~~~e 251 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIME-GGRIIQHGTPEE 251 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEecCHHH
Confidence 99999999999999999999999999865 999999999976 5678889988886 599999999754
No 160
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.5e-38 Score=337.70 Aligned_cols=194 Identities=28% Similarity=0.444 Sum_probs=163.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCC-CCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDI-HSPNI 674 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~-~~~~l 674 (1174)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 579999999999999999999999999999999999877 568999999987643 224567899999874 36778
Q ss_pred CHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCC
Q 001048 675 TVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 754 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 754 (1174)
|++||+.++.... .....+..+.++++++.+++.+..++.+ ..|||||||||+|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998865432 1223344556788999999987666654 3699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 755 GLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 755 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|||+.++..+.+.|++++++|+|||++||+++ ++...+|+++++.+ |+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~ 211 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLED-GK 211 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CC
Confidence 99999999999999999877999999999975 56666898888864 53
No 161
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-37 Score=348.36 Aligned_cols=216 Identities=28% Similarity=0.416 Sum_probs=180.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. +++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++.
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67888887542 12359999999999999999999999999999999999887 56999999998764
Q ss_pred c---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 654 Q---HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 654 ~---~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
. ...++.++|++|++. .+...||.||+.+..... ..+.+...++++++++.+++.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567899999863 345689999998765322 2344445567889999999987777765 369999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~-~G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMD-KGRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCeEEEE
Confidence 999999999999999999999999999999999999999999875 899999999975 5667889998886 5899999
Q ss_pred cCCCc
Q 001048 809 GPLGQ 813 (1174)
Q Consensus 809 G~~~~ 813 (1174)
|++++
T Consensus 220 g~~~~ 224 (277)
T PRK13652 220 GTVEE 224 (277)
T ss_pred CCHHH
Confidence 98743
No 162
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=348.15 Aligned_cols=214 Identities=24% Similarity=0.359 Sum_probs=177.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~-------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRY-------------QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEc-------------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 5678888753 23569999999999999999999999999999999999887 56999999999863
Q ss_pred c-----ccccceEEEEccCCCC-CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 Q-----HTFARISGYCEQNDIH-SPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~-----~~~~~~~~~v~Q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
. ...++.++|++|++.. ++..|+.||+.+..... .....+..++++++++.+++.+..++.+ ..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCC
Confidence 1 1234678999998653 45568999998864332 2233444556788999999987777654 3699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~-~G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLR-QGQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 5667789998886 589999
Q ss_pred EcCCC
Q 001048 808 FGPLG 812 (1174)
Q Consensus 808 ~G~~~ 812 (1174)
.|+++
T Consensus 217 ~g~~~ 221 (271)
T PRK13638 217 HGAPG 221 (271)
T ss_pred eCCHH
Confidence 99864
No 163
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-37 Score=345.03 Aligned_cols=215 Identities=27% Similarity=0.412 Sum_probs=179.3
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~-------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRL-------------GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEe-------------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 6788888754 23579999999999999999999999999999999999876 56899999998764
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 654 Q---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 654 ~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
. ...++.++|++|++.+++.+||+||+.++.... ....+...+.++++++.+++.+..++.++ .|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYP-----QLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHH
Confidence 3 123456899999988888899999998864321 11222334567889999999877777653 699999
Q ss_pred HHHHHHHHHhh------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 731 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 731 rqRv~ia~al~------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
||||+|||||+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||+++ .+.+.+|+++++. +|
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLH-QG 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEE-CC
Confidence 99999999999 5999999999999999999999999999997 56999999999975 5667889998887 58
Q ss_pred EEEEEcCCCc
Q 001048 804 RIIYFGPLGQ 813 (1174)
Q Consensus 804 ~~v~~G~~~~ 813 (1174)
++++.|++++
T Consensus 218 ~i~~~~~~~~ 227 (258)
T PRK13548 218 RLVADGTPAE 227 (258)
T ss_pred EEEeeCCHHH
Confidence 9999998643
No 164
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-37 Score=343.65 Aligned_cols=216 Identities=25% Similarity=0.291 Sum_probs=176.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 588999988542 346999999999999999999999999999999999987632 3589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----CcccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD----GIKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++ +||+||+.++..... ........+.++++++.+++. +..++..
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 148 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA-- 148 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc--
Confidence 87632 124567999999987774 899999998754321 112333456678888888873 3344433
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|+++++.
T Consensus 149 ---~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 149 ---LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999964 799999999975 5667789888886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|+++..|+++
T Consensus 224 -~G~i~~~g~~~ 234 (254)
T PRK14273 224 -NGCIEEESSTD 234 (254)
T ss_pred -CCEEEEeCCHH
Confidence 59999999864
No 165
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-37 Score=352.62 Aligned_cols=225 Identities=18% Similarity=0.247 Sum_probs=180.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC-C-eEEEEEEECCee
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG-G-IIEGDIRIGGYP 651 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~-~-~~~G~i~~~g~~ 651 (1174)
++++|+++.+... .+...+|+||||+|++||+++|+|+||||||||+++|+|..++ + +.+|+|.++|++
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 7888998765321 1124699999999999999999999999999999999998752 1 468999999998
Q ss_pred CCcc---c----ccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCC
Q 001048 652 KVQH---T----FARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPG 722 (1174)
Q Consensus 652 ~~~~---~----~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 722 (1174)
+... . +++.++||+|++ .+.|.+|+.+++........ ....++..+++.++++.+||.+..+..-. .
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~--~ 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDV--Y 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhC--C
Confidence 6431 1 124699999997 47889999999876643321 23445566788999999999753221111 2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+++|||||||||+|||||+.+|++|++||||+|||+.++..++++|+++++ .|.|+|++||+++ .+.+.+|++++|.
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~- 228 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMY- 228 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 357999999999999999999999999999999999999999999999986 4999999999975 4567789988886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 229 ~G~ive~g~~~~ 240 (326)
T PRK11022 229 AGQVVETGKAHD 240 (326)
T ss_pred CCEEEEECCHHH
Confidence 599999999754
No 166
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-38 Score=356.76 Aligned_cols=213 Identities=23% Similarity=0.360 Sum_probs=180.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||+|+++ ..+.++|+|+||++++||.+||+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~-----------~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYP-----------GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecC-----------CCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 689999999764 334579999999999999999999999999999999999887 5699999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-------cccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-------IKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 722 (1174)
.. ...++.+++++|...+ +..|+|+||.++.. +.+ .+.+.++++++||++ ..|+.+|+.|
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hl-F~~Tlr~NL~lA~~-----~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G 472 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHL-FSGTLRDNLRLANP-----DAS----DEELWAALQQVGLEKLLESAPDGLNTWLGEGG 472 (573)
T ss_pred hhCChhhHHHHHhhhccchHH-HHHHHHHHHhhcCC-----CCC----HHHHHHHHHHcCHHHHHHhChhhhhchhccCC
Confidence 43 3456788999997655 56799999987631 222 234667777777764 3567788766
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
. .||||||||++|||+|++|.++++|||||.|||+.+++++++.|.+-++ |+|+|++||+.. -.+.||+++++. +
T Consensus 473 ~-~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~-~ 547 (573)
T COG4987 473 R-RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLD-N 547 (573)
T ss_pred C-cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEE-C
Confidence 4 6999999999999999999999999999999999999999999998765 999999999875 478899999997 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+..+
T Consensus 548 Gkiie~G~~~~ 558 (573)
T COG4987 548 GKIIEEGTHAE 558 (573)
T ss_pred CeeeecCCHHh
Confidence 99999999854
No 167
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-37 Score=342.77 Aligned_cols=218 Identities=25% Similarity=0.323 Sum_probs=178.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSF-------------GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEE-------------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 37788888754 2346999999999999999999999999999999999987531 4689999999
Q ss_pred eeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccCCC
Q 001048 650 YPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGLPG 722 (1174)
Q Consensus 650 ~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~ 722 (1174)
.++.. ...++.++|++|++.+++.+||+||+.++...+.. .....+..+.++++++.+++.+ ..|+.+
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---- 144 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPA---- 144 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc----
Confidence 88643 23456799999998888899999999987543211 1123344566888999999854 234333
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|+|++||+++ .+.+.+|+++++. +
T Consensus 145 -~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~-~ 220 (250)
T PRK14247 145 -GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLY-K 220 (250)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEE-C
Confidence 47999999999999999999999999999999999999999999999865 899999999975 5667889888886 5
Q ss_pred cEEEEEcCCC
Q 001048 803 GRIIYFGPLG 812 (1174)
Q Consensus 803 G~~v~~G~~~ 812 (1174)
|++++.|+++
T Consensus 221 G~i~~~g~~~ 230 (250)
T PRK14247 221 GQIVEWGPTR 230 (250)
T ss_pred CeEEEECCHH
Confidence 9999999864
No 168
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.3e-37 Score=336.16 Aligned_cols=198 Identities=24% Similarity=0.383 Sum_probs=170.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.... .+.++|++|++.+++.+|++|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 579999999999999999999999999999999999876 56999999998764332 246899999998888899999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
|+.+....+. .. .+++.++++.+++.+..|..+ ..||||||||++||||++.+|++|+|||||+|||+
T Consensus 90 ~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 90 NLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred HHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 9988654321 11 235678899999987777654 36999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 759 RAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
.++..+.+.|++++++|+|+|++||+++ .+.+.+|+++++. +|++++.|++.+
T Consensus 158 ~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~~ 210 (223)
T TIGR03740 158 IGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIIS-EGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEe-CCEEEEecChhh
Confidence 9999999999999877999999999975 5667889988886 589999998753
No 169
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.1e-37 Score=352.91 Aligned_cols=226 Identities=20% Similarity=0.319 Sum_probs=183.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECCee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 651 (1174)
.++++|++..+... .+...+|+||||+|++||+++|+|+||||||||+++|+|..++. ..+|+|.++|++
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 58899998765321 12357999999999999999999999999999999999987631 148999999998
Q ss_pred CCcc---c---c-cceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCC
Q 001048 652 KVQH---T---F-ARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPG 722 (1174)
Q Consensus 652 ~~~~---~---~-~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 722 (1174)
+... . . ++.++||+|++ .+.+.+|+.+++........ .....+..+++.++++.++|.+..+.. + ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CC
Confidence 6431 1 2 24799999997 67899999999987654321 234455567788999999997643332 2 12
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+++|||||||||+|||||+.+|++||+||||+|||..++..++++|++++++ |.|+|++|||++ .+.+.+|++++|.
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~- 236 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY- 236 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE-
Confidence 4579999999999999999999999999999999999999999999999875 999999999975 4556789988886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 237 ~G~ive~g~~~~ 248 (330)
T PRK09473 237 AGRTMEYGNARD 248 (330)
T ss_pred CCEEEEECCHHH
Confidence 599999999754
No 170
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-37 Score=344.68 Aligned_cols=219 Identities=20% Similarity=0.240 Sum_probs=180.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRF-------------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEE-------------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 47889998754 23579999999999999999999999999999999999877 5699999999986
Q ss_pred Ccc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhccC----------CCC--CHHHHHHHHHHHHHHcCCCCcccc
Q 001048 653 VQH---T-FARISGYCEQNDIHSPNITVEESIVFSAWLRLS----------TQI--DSKTKAEFVNEVLQTIELDGIKDS 716 (1174)
Q Consensus 653 ~~~---~-~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~----------~~~--~~~~~~~~~~~~l~~l~l~~~~~~ 716 (1174)
... . .+..++|++|++.+++.+||+||+.++...... ... ...+..+.++++++.+|+.+..++
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 432 1 233589999999999999999999986431100 000 112234567888999999876666
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcc
Q 001048 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDD 795 (1174)
Q Consensus 717 ~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~ 795 (1174)
.+ +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 65 369999999999999999999999999999999999999999999999875 899999999975 56677898
Q ss_pred eeEEecCcEEEEEcCCCc
Q 001048 796 LVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 796 ~~~l~~~G~~v~~G~~~~ 813 (1174)
++++. +|++++.|++++
T Consensus 224 i~~l~-~g~i~~~~~~~~ 240 (255)
T PRK11300 224 IYVVN-QGTPLANGTPEE 240 (255)
T ss_pred EEEEE-CCeEEecCCHHH
Confidence 88886 599999998643
No 171
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.8e-37 Score=341.55 Aligned_cols=216 Identities=27% Similarity=0.362 Sum_probs=178.7
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 i~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSF-------------DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEc-------------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 6778888743 23479999999999999999999999999999999999876 56899999998764
Q ss_pred ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhccC--C---CCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 654 QHT----FARISGYCEQNDIHSPNITVEESIVFSAWLRLS--T---QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 654 ~~~----~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~--~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
... .++.++|++|++.+++.+||+||+.++...... . ....++..++++++++.+++.+..++.++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG----- 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChh-----
Confidence 321 234699999999999999999999986432100 0 01123345678899999999877776553
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+|+++++. +|+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLH-QGS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEE-CCe
Confidence 6999999999999999999999999999999999999999999999976 799999999975 5667789888886 589
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+.+
T Consensus 220 ~~~~~~~~ 227 (242)
T TIGR03411 220 VLAEGSLD 227 (242)
T ss_pred EEeeCCHH
Confidence 99999864
No 172
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=7.2e-38 Score=337.78 Aligned_cols=199 Identities=26% Similarity=0.442 Sum_probs=163.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCC--CCCCH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHS--PNITV 676 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~--~~lTv 676 (1174)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++. ..++.++|++|++.+. +.+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 469999999999999999999999999999999999876 56899999998753 3456789999997653 34899
Q ss_pred HHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 677 EESIVFSAWLRLST-QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
+||+.++....... ....+...++++++++.+++.+..++.+ ..||||||||++|||||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 99998864321100 0112234456888999999987666654 36999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 756 LDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +| +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLN-RT-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEc-Cc-EeecC
Confidence 9999999999999999877999999999975 5667789988885 44 66654
No 173
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=7.1e-37 Score=386.48 Aligned_cols=214 Identities=28% Similarity=0.416 Sum_probs=178.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|++|.++ ..++++|+|+|++|+|||.+||+||||||||||+|+|+|.++ |.+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~-----------~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYP-----------GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeC-----------CCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 3699999999763 123579999999999999999999999999999999999988 569999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~ 721 (1174)
+.+ ..+++.++||+|++.++. .|++|||.++.. ..+.+ ++.++++..+ +++..||.+|+.
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGAP-----YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCCC-----CCCHH----HHHHHHHHcChHHHHHhCcccccceecCC
Confidence 754 356788999999987765 699999987521 12222 2344444443 345678999887
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|. .||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++.+ ++|+|++||+++ ..+.+|+++++.
T Consensus 599 G~-~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~- 673 (694)
T TIGR03375 599 GR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMD- 673 (694)
T ss_pred CC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe-
Confidence 64 6999999999999999999999999999999999999999999999864 899999999975 568899999996
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|+.++
T Consensus 674 ~G~i~e~G~~~e 685 (694)
T TIGR03375 674 NGRIVADGPKDQ 685 (694)
T ss_pred CCEEEeeCCHHH
Confidence 599999999743
No 174
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.9e-37 Score=345.22 Aligned_cols=225 Identities=23% Similarity=0.316 Sum_probs=180.2
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+....... ..+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 67888887653110000 0113579999999999999999999999999999999999887 56899999998864
Q ss_pred cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCC
Q 001048 654 QH------TFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVN 724 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 724 (1174)
.. ..++.++|++|++ .+.+.+||+||+.+..... .........++++++++.+++. +..+... .
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLP-----R 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCCh-----h
Confidence 31 1345799999986 4667899999998764321 1122334456788999999995 5556654 3
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++++. +|
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~-~G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMD-KG 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEe-CC
Confidence 69999999999999999999999999999999999999999999999865 899999999975 5666789988886 59
Q ss_pred EEEEEcCCCc
Q 001048 804 RIIYFGPLGQ 813 (1174)
Q Consensus 804 ~~v~~G~~~~ 813 (1174)
++++.|++++
T Consensus 228 ~i~~~g~~~~ 237 (265)
T TIGR02769 228 QIVEECDVAQ 237 (265)
T ss_pred EEEEECCHHH
Confidence 9999999753
No 175
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-37 Score=346.35 Aligned_cols=216 Identities=23% Similarity=0.378 Sum_probs=180.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. .+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~~~nl~~~~~-----------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYP-----------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcC-----------CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 588999988542 123579999999999999999999999999999999999877 5689999999987
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQ---HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.. ..+++.++|++|++. .++.+||+||+.++.... ....++..++++++++.+++.+..++.+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 234567999999963 567899999998865322 2233444567889999999987777765 36999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|+|++||+++ ++ ..+|+++++. +|++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~-~G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFS-EGKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999866 599999999986 34 5788888886 599999
Q ss_pred EcCCC
Q 001048 808 FGPLG 812 (1174)
Q Consensus 808 ~G~~~ 812 (1174)
.|+++
T Consensus 223 ~g~~~ 227 (271)
T PRK13632 223 QGKPK 227 (271)
T ss_pred ecCHH
Confidence 99864
No 176
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.4e-37 Score=341.09 Aligned_cols=219 Identities=22% Similarity=0.275 Sum_probs=175.0
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|..+..+.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 68 (243)
T TIGR01978 2 KIKDLHVSV-------------EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68 (243)
T ss_pred eEeeEEEEE-------------CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCC
Confidence 567777654 2357999999999999999999999999999999999984211568999999987643
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC----CCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCC
Q 001048 655 H---T-FARISGYCEQNDIHSPNITVEESIVFSAWLRLST----QIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNG 725 (1174)
Q Consensus 655 ~---~-~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~ 725 (1174)
. . .+..++|++|++.+++.+|++||+.+........ ..+..+..++++++++.+++. +..++.++ .+
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~ 144 (243)
T TIGR01978 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EG 144 (243)
T ss_pred CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cC
Confidence 2 1 1234899999999999999999998764322110 112233346688899999997 45555432 14
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHH-hcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEA-FDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~~G~ 804 (1174)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|+++++. +|+
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~-~G~ 222 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLL-DGR 222 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEe-CCE
Confidence 9999999999999999999999999999999999999999999999877899999999975 45555 68888776 699
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 223 i~~~g~~~ 230 (243)
T TIGR01978 223 IVKSGDVE 230 (243)
T ss_pred EEEecCHH
Confidence 99999863
No 177
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=9.4e-37 Score=384.30 Aligned_cols=212 Identities=28% Similarity=0.415 Sum_probs=174.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||+|.++. .+++++|+|+|++++|||.+||+||||||||||+|+|+|.++ |.+|+|.+||+|+
T Consensus 478 ~I~~~nVsf~Y~~----------~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i 545 (711)
T TIGR00958 478 LIEFQDVSFSYPN----------RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ--PTGGQVLLDGVPL 545 (711)
T ss_pred eEEEEEEEEECCC----------CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEH
Confidence 5999999997631 123579999999999999999999999999999999999987 5689999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~ 722 (1174)
.+ ..+++.++||+|++.++ +.|++|||.++.. ..+ ++.+.++++..++ ++..||.+|+.|
T Consensus 546 ~~~~~~~lr~~i~~v~Q~~~lF-~gTIreNI~~g~~-----~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 615 (711)
T TIGR00958 546 VQYDHHYLHRQVALVGQEPVLF-SGSVRENIAYGLT-----DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG 615 (711)
T ss_pred HhcCHHHHHhhceEEecCcccc-ccCHHHHHhcCCC-----CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCC
Confidence 54 34677899999998776 5799999988631 122 2334555555554 345688888765
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..||||||||++|||||+++|+||+||||||+||+.+++.+.+ .. ..+++|+|++||+++ ..+.+|+++++. +
T Consensus 616 -~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~-~ 688 (711)
T TIGR00958 616 -SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLK-K 688 (711)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEE-C
Confidence 4699999999999999999999999999999999999999998 22 235899999999974 567899999997 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 689 G~ive~Gt~~e 699 (711)
T TIGR00958 689 GSVVEMGTHKQ 699 (711)
T ss_pred CEEEEeeCHHH
Confidence 99999999754
No 178
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-37 Score=348.18 Aligned_cols=220 Identities=23% Similarity=0.337 Sum_probs=177.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+.... ...+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 2 ~l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 71 (280)
T PRK13649 2 GINLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLI 71 (280)
T ss_pred eEEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEc
Confidence 367888888652100 001469999999999999999999999999999999999877 5689999999876
Q ss_pred Cc-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCC
Q 001048 653 VQ-------HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGV 723 (1174)
Q Consensus 653 ~~-------~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 723 (1174)
.. ...++.++|++|++. .++..||+||+.+..... ....++..++++++++.+++. ...++.+
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 143 (280)
T PRK13649 72 TSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNP----- 143 (280)
T ss_pred cccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----
Confidence 42 123567899999862 233479999998865332 123344456678899999996 3455554
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
+.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~-~G 221 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLE-KG 221 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEE-CC
Confidence 469999999999999999999999999999999999999999999999877999999999975 5667789888886 58
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++++.|+++
T Consensus 222 ~i~~~g~~~ 230 (280)
T PRK13649 222 KLVLSGKPK 230 (280)
T ss_pred EEEEeCCHH
Confidence 999999864
No 179
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-37 Score=342.67 Aligned_cols=218 Identities=25% Similarity=0.318 Sum_probs=177.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++++|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478889987542 346999999999999999999999999999999999987642 3589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
+++.. ..+++.++|++|++.+++.+||.||+.++...+.. ....++..++++++++.+++.+ ..++.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 98641 13456799999999998899999999987543210 1123334456788899888753 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|+++++.
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999875 699999999975 5667789988886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 223 -~G~i~~~~~~~ 233 (253)
T PRK14267 223 -LGKLIEVGPTR 233 (253)
T ss_pred -CCEEEEeCCHH
Confidence 59999999864
No 180
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-37 Score=351.05 Aligned_cols=227 Identities=22% Similarity=0.274 Sum_probs=183.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+....... . ..+.+.+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 5 ~l~v~nl~~~~~~~~~~~--~-~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF--K-PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc--c-cCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 488999998664221100 0 0113579999999999999999999999999999999999877 4689999999986
Q ss_pred Ccc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCC
Q 001048 653 VQH------TFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGV 723 (1174)
Q Consensus 653 ~~~------~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 723 (1174)
... .+++.++||+|++ .+.+.+||.+++........ ...+.+..+++.++++.+||.+ ..++..
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p----- 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRYP----- 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCCC-----
Confidence 432 2456799999997 57889999999987654321 2344556678899999999963 445543
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
++|||||||||+|||||+.+|++|++||||+|||..++..++++|++++++ |.|+|++||+++ .+.+.+|++++|. +
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~-~ 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMY-L 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 479999999999999999999999999999999999999999999999764 999999999875 4556788888886 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 231 G~ive~g~~~~ 241 (327)
T PRK11308 231 GRCVEKGTKEQ 241 (327)
T ss_pred CEEEEECCHHH
Confidence 99999999754
No 181
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-37 Score=345.09 Aligned_cols=216 Identities=29% Similarity=0.384 Sum_probs=179.6
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. +++.+++|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 56788887542 12469999999999999999999999999999999999887 56899999998863
Q ss_pred c-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 Q-----HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~-----~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
. ...++.++|++|++. .+...||.||+.++.... ....++..+++.++++.++|.+..++.++ .||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPH-----HLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChh-----hCC
Confidence 1 123567999999863 334579999998764321 22344455678899999999888777654 699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|++++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~-~G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMS-DGKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 5666789888886 599999
Q ss_pred EcCCCc
Q 001048 808 FGPLGQ 813 (1174)
Q Consensus 808 ~G~~~~ 813 (1174)
.|++++
T Consensus 218 ~g~~~~ 223 (275)
T PRK13639 218 EGTPKE 223 (275)
T ss_pred eCCHHH
Confidence 998743
No 182
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-37 Score=333.17 Aligned_cols=194 Identities=27% Similarity=0.401 Sum_probs=164.1
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHHHHHH
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEESIVF 682 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~ 682 (1174)
|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999887 5689999999886432 234678999999998889999999987
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHH
Q 001048 683 SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 762 (1174)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~ 762 (1174)
+..... .. .+..+++++++++.+++.+..++.+ .+||||||||++|||||+.+|++|+|||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 643111 11 1233456788999999987777664 369999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 763 TVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 763 ~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
.+.+.|++++++ |+|+|++||+++ ++.+.+|+++++. +|++++.|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLD-NGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEE-CCEEeecC
Confidence 999999999764 899999999975 5667789988886 58988754
No 183
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-37 Score=345.12 Aligned_cols=219 Identities=27% Similarity=0.400 Sum_probs=181.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 588999987542 3479999999999999999999999999999999999877 5689999999876
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.. ...++.++|++|++.+++.+|+.||+.++...... .........++++++++.+++.+..++.++ .|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD-----SLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCCH
Confidence 32 23456789999998888889999999875321100 001112334567889999999876676653 6999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|+++++. +|++++
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~-~G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALR-GGEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999975 5667889998887 589999
Q ss_pred EcCCCc
Q 001048 808 FGPLGQ 813 (1174)
Q Consensus 808 ~G~~~~ 813 (1174)
.|+.++
T Consensus 229 ~~~~~~ 234 (265)
T PRK10575 229 QGTPAE 234 (265)
T ss_pred ecCHHH
Confidence 998654
No 184
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.8e-37 Score=335.00 Aligned_cols=214 Identities=24% Similarity=0.357 Sum_probs=175.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+... ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 48899998854210 001359999999999999999999999999999999999877 5689999999876
Q ss_pred Cccc------c-cceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 653 VQHT------F-ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 653 ~~~~------~-~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
.... . ++.++|++|++.+++.+|+.||+.+....+ .....+..++++++++.+++.+..++.+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4321 1 246899999998889999999998865332 1233444567889999999987766654 36
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ . .+.+|+++++. +|+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~-~~~~d~i~~l~-~g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-L-AARCDRRLRLV-NGQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-H-HHhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999764 899999999975 3 46689888886 588
Q ss_pred EEEE
Q 001048 805 IIYF 808 (1174)
Q Consensus 805 ~v~~ 808 (1174)
+++.
T Consensus 224 i~~~ 227 (228)
T PRK10584 224 LQEE 227 (228)
T ss_pred EEec
Confidence 8753
No 185
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-37 Score=343.28 Aligned_cols=218 Identities=26% Similarity=0.382 Sum_probs=180.0
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 3 l~~~~l~~~~-------------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGY-------------GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEE-------------CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 6788888754 23579999999999999999999999999999999999876 56899999998753
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 654 Q---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 654 ~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
. ...++.++|++|++.+++.+|+.||+.++...... .........++++++++.+++.+..++.. ..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHH
Confidence 2 22345689999998888889999999875311000 01111233456788999999987777664 469999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|+++..|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLA-NGHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEE-CCeEEEEc
Confidence 999999999999999999999999999999999999999999877999999999975 5778889999987 58999999
Q ss_pred CCCc
Q 001048 810 PLGQ 813 (1174)
Q Consensus 810 ~~~~ 813 (1174)
+.++
T Consensus 221 ~~~~ 224 (255)
T PRK11231 221 TPEE 224 (255)
T ss_pred CHHH
Confidence 8754
No 186
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-37 Score=346.96 Aligned_cols=217 Identities=24% Similarity=0.349 Sum_probs=180.8
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEE---EEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~---G~i~~~ 648 (1174)
..++++|+++.+. ..++++|+|+||+|++||+++|+||||||||||+++|+|..++ .+ |+|.++
T Consensus 4 ~~l~i~~l~~~~~-----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p--~~g~~G~i~i~ 70 (282)
T PRK13640 4 NIVEFKHVSFTYP-----------DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP--DDNPNSKITVD 70 (282)
T ss_pred ceEEEEEEEEEcC-----------CCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC--CCCCCcEEEEC
Confidence 3588999988542 1124699999999999999999999999999999999998763 34 999999
Q ss_pred CeeCCcc---cccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 649 GYPKVQH---TFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 649 g~~~~~~---~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
|+++... ..++.+||++|++. .++..||.||+.+..... ..+.++..++++++++.++|.+..++.. +
T Consensus 71 g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (282)
T PRK13640 71 GITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----A 142 (282)
T ss_pred CEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----c
Confidence 9987532 24567899999974 567899999998864322 2344555667889999999987777664 4
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..+|+++++. +|
T Consensus 143 ~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~-~G 219 (282)
T PRK13640 143 NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLD-DG 219 (282)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999865 899999999975 34 6788888886 59
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++++.|+++
T Consensus 220 ~i~~~g~~~ 228 (282)
T PRK13640 220 KLLAQGSPV 228 (282)
T ss_pred EEEEeCCHH
Confidence 999999874
No 187
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-37 Score=341.66 Aligned_cols=218 Identities=23% Similarity=0.347 Sum_probs=178.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 378889987542 346999999999999999999999999999999999987532 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++.+||+||+.++...+. .....+..++++++++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87631 2345679999999988899999999988754321 1123344566788899998842 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+.+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++.
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 347999999999999999999999999999999999999999999999964 699999999975 5667889998886
Q ss_pred -----cCcEEEEEcCCC
Q 001048 801 -----NGGRIIYFGPLG 812 (1174)
Q Consensus 801 -----~~G~~v~~G~~~ 812 (1174)
++|++++.|+++
T Consensus 222 ~~~~~~~g~i~~~~~~~ 238 (258)
T PRK14241 222 LEATGKPGRLVEIDDTE 238 (258)
T ss_pred cccCCCCceEEecCCHH
Confidence 369999999864
No 188
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-37 Score=343.61 Aligned_cols=217 Identities=23% Similarity=0.327 Sum_probs=180.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 7 ~l~i~~l~~~~~-----------~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQ-----------SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcC-----------CCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 588999988542 112469999999999999999999999999999999999987 5689999999886
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQ---HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.. ...++.++|++|++. +++..|+++|+.+..... ....++..++++++++.+++.+..|+.. +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 43 234567999999974 677889999998875322 2233444566788999999987777654 46999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++. .+|+++++. +|++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~-~G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMN-KGTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999765 899999999986 444 488888886 599999
Q ss_pred EcCCCc
Q 001048 808 FGPLGQ 813 (1174)
Q Consensus 808 ~G~~~~ 813 (1174)
.|++++
T Consensus 223 ~g~~~~ 228 (269)
T PRK13648 223 EGTPTE 228 (269)
T ss_pred ecCHHH
Confidence 998754
No 189
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.4e-37 Score=337.79 Aligned_cols=211 Identities=23% Similarity=0.337 Sum_probs=173.3
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 2 EVSNLNVYY-------------GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITK 66 (230)
T ss_pred EEEeEEEEe-------------CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCC
Confidence 567777643 23479999999999999999999999999999999999887 568999999988643
Q ss_pred cc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-CCCcccccccCCCCCCCCHH
Q 001048 655 HT----FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-LDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 655 ~~----~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~LSgG 729 (1174)
.. .++.++|++|++.+++.+|++||+.++..... .. ..+..+++++.++ +.+..++.+ +.||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G 135 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRG-----GDLSGG 135 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCCh-----hhCCHH
Confidence 21 24568999999999899999999988754321 11 1233566777776 455555554 469999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|+++++. +|++++.
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~g~i~~~ 213 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVME-RGRVVAS 213 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEE
Confidence 999999999999999999999999999999999999999999874 899999999975 5666788888886 5999999
Q ss_pred cCCCc
Q 001048 809 GPLGQ 813 (1174)
Q Consensus 809 G~~~~ 813 (1174)
|+.++
T Consensus 214 ~~~~~ 218 (230)
T TIGR03410 214 GAGDE 218 (230)
T ss_pred CCHHH
Confidence 98754
No 190
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.1e-37 Score=343.45 Aligned_cols=221 Identities=26% Similarity=0.346 Sum_probs=180.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECCee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 651 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTF-------------NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEe-------------CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 47888998754 2357999999999999999999999999999999999987643 246999999987
Q ss_pred CCc--------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC-----CCCHHHHHHHHHHHHHHcCCCCcccccc
Q 001048 652 KVQ--------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLST-----QIDSKTKAEFVNEVLQTIELDGIKDSLV 718 (1174)
Q Consensus 652 ~~~--------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 718 (1174)
+.. ...++.++|++|++.+++.+||+||+.++.....+. ....++.+++++++++.+++.+..|+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 632 122456899999998889999999998764211000 0112234567889999999987767654
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhccee
Q 001048 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLV 797 (1174)
Q Consensus 719 ~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~ 797 (1174)
+ .|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++
T Consensus 151 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 S-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 3 69999999999999999999999999999999999999999999999864 899999999975 4677888888
Q ss_pred EEecCcEEEEEcCCCc
Q 001048 798 LMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 798 ~l~~~G~~v~~G~~~~ 813 (1174)
++. +|++++.|++++
T Consensus 225 ~l~-~g~i~~~g~~~~ 239 (262)
T PRK09984 225 ALR-QGHVFYDGSSQQ 239 (262)
T ss_pred EEE-CCEEEEeCCHHH
Confidence 886 589999998754
No 191
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=4.1e-37 Score=336.47 Aligned_cols=201 Identities=29% Similarity=0.422 Sum_probs=169.5
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccceEEEEc-cCCCCCCC
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCE-QNDIHSPN 673 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-Q~~~~~~~ 673 (1174)
+++++|+|+||++++||+++|+||||||||||+++|+|..+ |.+|+|.++|++... ...++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 45679999999999999999999999999999999999877 568999999987532 23456789998 55677788
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 674 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
+|++||+.+..... .....+..++++++++.+++.+..|+.++ .||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865432 22333445567889999999887777654 69999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 754 SGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++++. +|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVID-KGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEecC
Confidence 999999999999999999764 899999999975 5667789888886 58998765
No 192
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=5.2e-37 Score=330.80 Aligned_cols=198 Identities=25% Similarity=0.339 Sum_probs=167.5
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-ccccceEEEEccCCCCCCCCCHHHH
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-HTFARISGYCEQNDIHSPNITVEES 679 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~Q~~~~~~~lTv~e~ 679 (1174)
+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 4679999999999999999999999999999999887 568999999998643 2345679999999999888999999
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHH
Q 001048 680 IVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 759 (1174)
Q Consensus 680 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~ 759 (1174)
+.+...... . ......++++++++.+++.+..++.. +.||||||||++|||+|+.+|++++|||||+|||+.
T Consensus 91 ~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 987543211 1 11223456788999999987767664 369999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 760 AAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 760 ~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
++..+.+.|++++++ |+|+|++||+++ .+.+.+|+++++. +|++++.|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~-~g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVS-QGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEE-CCeEEEecC
Confidence 999999999999764 899999999975 5667789998886 589998875
No 193
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.6e-37 Score=342.76 Aligned_cols=218 Identities=28% Similarity=0.412 Sum_probs=179.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~-------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSA-------------GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEE-------------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 5677887754 23579999999999999999999999999999999999877 56899999998764
Q ss_pred cc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 654 QH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 654 ~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
.. ..++.++|++|++.+++.+||+||+.++...... ......+..+++.++++.+++.+..++.++ .||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS-----TLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHH
Confidence 31 2345689999998777889999999885311000 001112334567889999999877776653 69999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+.+|+++++. +|++++.|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLD-GGRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCCEEEec
Confidence 999999999999999999999999999999999999999999877899999999986 5667899998886 58999999
Q ss_pred CCCc
Q 001048 810 PLGQ 813 (1174)
Q Consensus 810 ~~~~ 813 (1174)
+.++
T Consensus 220 ~~~~ 223 (256)
T TIGR03873 220 PPRE 223 (256)
T ss_pred CHHH
Confidence 8753
No 194
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-37 Score=338.75 Aligned_cols=220 Identities=22% Similarity=0.311 Sum_probs=175.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCC---CCCeEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK---TGGIIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~---~~~~~~G~i~~~g 649 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWY-------------GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEE-------------CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 47888888754 2356999999999999999999999999999999999962 3212489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
+++.. ...++.++|++|++.+++ .|+.||+.++...+. ........+.++++++.+++.+..+..... .+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKE-SAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhC-Ccc
Confidence 98643 123567999999988776 699999988754321 112223445678889999986422111111 134
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.+|+++++. +|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~-~G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFY-MGE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEE-CCE
Confidence 799999999999999999999999999999999999999999999985 4799999999975 5667889998886 599
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 223 ~~~~~~~~ 230 (250)
T PRK14245 223 MVEYDDTK 230 (250)
T ss_pred EEEECCHH
Confidence 99999864
No 195
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-37 Score=339.31 Aligned_cols=221 Identities=26% Similarity=0.348 Sum_probs=176.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC---CCeEEEEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIEGDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~---~~~~~G~i~~~ 648 (1174)
..++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+|+|+|... +.+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 3588999998542 3469999999999999999999999999999999999743 12368999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCC
Q 001048 649 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 649 g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
|+++.. ...++.++|++|++.+++ .||+||+.++...+. ....+...++++++++.+++.+..+..... ..
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHE-SA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC-Cc
Confidence 988642 123567999999988877 599999998754321 112233456678889988885421111111 13
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++. +|
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~-~G 224 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFY-MG 224 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEE-CC
Confidence 47999999999999999999999999999999999999999999999954 799999999975 5667889998887 58
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++++.|+++
T Consensus 225 ~i~~~g~~~ 233 (253)
T PRK14242 225 KLIEVGPTE 233 (253)
T ss_pred EEEEeCCHH
Confidence 999998863
No 196
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-37 Score=350.42 Aligned_cols=228 Identities=15% Similarity=0.227 Sum_probs=179.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC--CeEEEEEEECCe
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--GIIEGDIRIGGY 650 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~--~~~~G~i~~~g~ 650 (1174)
.++++|+++.+... .+.+.+|+||||+|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|+
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 37888998865321 1235799999999999999999999999999999999998652 246899999999
Q ss_pred eCCcc---c----ccceEEEEccCCC--CCCCCCHHHHHHHHHhhccCCC---CCHHHHHHHHHHHHHHcCCCCcccccc
Q 001048 651 PKVQH---T----FARISGYCEQNDI--HSPNITVEESIVFSAWLRLSTQ---IDSKTKAEFVNEVLQTIELDGIKDSLV 718 (1174)
Q Consensus 651 ~~~~~---~----~~~~~~~v~Q~~~--~~~~lTv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~ 718 (1174)
++... . +++.++||+|++. +.+.+||.+++........... ....+..+++.++++.+||.+..+..-
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~ 153 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMR 153 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHh
Confidence 86431 1 1346999999975 5788999999986432111000 112234567889999999975322111
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhccee
Q 001048 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLV 797 (1174)
Q Consensus 719 ~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~ 797 (1174)
. .+.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.++ |.|+|+|||+++ .+.+.+|+++
T Consensus 154 ~--~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~ 230 (330)
T PRK15093 154 S--FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKIN 230 (330)
T ss_pred C--CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEE
Confidence 1 13579999999999999999999999999999999999999999999999875 999999999975 5667789888
Q ss_pred EEecCcEEEEEcCCCc
Q 001048 798 LMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 798 ~l~~~G~~v~~G~~~~ 813 (1174)
+|. +|++++.|+.++
T Consensus 231 vm~-~G~ive~g~~~~ 245 (330)
T PRK15093 231 VLY-CGQTVETAPSKE 245 (330)
T ss_pred EEE-CCEEEEECCHHH
Confidence 886 599999998744
No 197
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3.9e-37 Score=335.29 Aligned_cols=198 Identities=24% Similarity=0.342 Sum_probs=167.6
Q ss_pred cccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHH
Q 001048 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIV 681 (1174)
Q Consensus 602 L~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~ 681 (1174)
|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++..... ..+|++|++.+++.+||+||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999887 568999999998653222 2489999999989999999998
Q ss_pred HHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHH
Q 001048 682 FSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 761 (1174)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~ 761 (1174)
+......+ .....+..++++++++.+++.+..++.+ .+||||||||++|||+|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 86321111 2233444566888999999987777665 36999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 762 ATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 762 ~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++.|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLT-NGPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEe-CCcEecccCc
Confidence 9999999998765 899999999975 5677789888887 5899988865
No 198
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-37 Score=343.19 Aligned_cols=220 Identities=25% Similarity=0.334 Sum_probs=181.8
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEE
Confidence 4688999988642 3479999999999999999999999999999999999877 568999999987
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
+.. ...++.++|++|++.+++..|++||+.++.....+ .....+...++++++++.+++.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 145 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLS 145 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCC
Confidence 643 22345689999999888899999999875211100 00011233456788999999987666654 4699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++||+++ .+.+.+|+++++. +|+++
T Consensus 146 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~ 223 (265)
T PRK10253 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALR-EGKIV 223 (265)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999864 899999999975 5778889998886 58999
Q ss_pred EEcCCCc
Q 001048 807 YFGPLGQ 813 (1174)
Q Consensus 807 ~~G~~~~ 813 (1174)
+.|++++
T Consensus 224 ~~g~~~~ 230 (265)
T PRK10253 224 AQGAPKE 230 (265)
T ss_pred EeCCHHH
Confidence 9998754
No 199
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-37 Score=341.01 Aligned_cols=220 Identities=24% Similarity=0.325 Sum_probs=178.4
Q ss_pred CCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC--C-CeEEEEE
Q 001048 569 FEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIEGDI 645 (1174)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i 645 (1174)
.....++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ + .+.+|+|
T Consensus 9 ~~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i 75 (260)
T PRK10744 9 TAPSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI 75 (260)
T ss_pred CCCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE
Confidence 3445689999988542 2469999999999999999999999999999999999864 1 1468999
Q ss_pred EECCeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccc
Q 001048 646 RIGGYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDS 716 (1174)
Q Consensus 646 ~~~g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~ 716 (1174)
.++|+++.. ...++.++|++|++.+++ .|++||+.++..... ..+.++..++++++++.+++.+ ..+.
T Consensus 76 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 152 (260)
T PRK10744 76 LLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQ 152 (260)
T ss_pred EECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhc
Confidence 999988632 124567999999988776 899999988653321 1233444567888999998743 2333
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcce
Q 001048 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 717 ~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
. ...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|++
T Consensus 153 ~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i 225 (260)
T PRK10744 153 S-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYT 225 (260)
T ss_pred C-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEE
Confidence 3 246999999999999999999999999999999999999999999999964 789999999975 566778888
Q ss_pred eEEecCcEEEEEcCCC
Q 001048 797 VLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 797 ~~l~~~G~~v~~G~~~ 812 (1174)
+++. +|++++.|+++
T Consensus 226 ~~l~-~G~i~~~g~~~ 240 (260)
T PRK10744 226 AFMY-LGELIEFGNTD 240 (260)
T ss_pred EEEE-CCEEEEeCCHH
Confidence 8886 59999999864
No 200
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-37 Score=325.84 Aligned_cols=196 Identities=29% Similarity=0.604 Sum_probs=162.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECCee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 651 (1174)
.++|+|++|.++.+ .+++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 58999999987542 12467999999999999999999999999999999999987632 568999999998
Q ss_pred CCcc--cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 652 KVQH--TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 652 ~~~~--~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
+... ..++.++|++|++.+++.+||+||+.++.... .+..+ ..||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~-----~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFV-----RGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccch-----hhCCHH
Confidence 6432 34567999999999999999999998753210 22222 369999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++ +.|+|+++|+...++.+.+|+++++. +|++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~-~G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLY-EGRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEE-CCEEEec
Confidence 999999999999999999999999999999999999999999765 67777776654346778889888887 5899876
Q ss_pred c
Q 001048 809 G 809 (1174)
Q Consensus 809 G 809 (1174)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 5
No 201
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=5.8e-37 Score=335.72 Aligned_cols=213 Identities=27% Similarity=0.433 Sum_probs=179.3
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+|+|+|+++.+||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~i~~l~~~~-------------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRF-------------GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEE-------------CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 567777643 23479999999999999999999999999999999999877 568999999988653
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH
Q 001048 655 H-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733 (1174)
Q Consensus 655 ~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 733 (1174)
. ..++.++|++|++.+++..|+.||+.+....+ ........+.++++++.+++.+..++.. +.||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 2 23457899999998888899999998875432 1223334466788999999977667654 3699999999
Q ss_pred HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 734 v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|+++++. +|++++.|+.+
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~ 216 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMS-NGKIEQIGSPD 216 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEE-CCEEEEecCHH
Confidence 99999999999999999999999999999999999998875 899999999975 5677789888886 59999999864
No 202
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-37 Score=345.15 Aligned_cols=221 Identities=22% Similarity=0.324 Sum_probs=181.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+.... +..++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 478899988653110 0013569999999999999999999999999999999999987 5689999999886
Q ss_pred Cc----ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 653 VQ----HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 653 ~~----~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ...++.+||++|++. .+...||.||+.|+.... .....+..++++++++.+||.+..++.++ .||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPH-----LLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCC
Confidence 43 224567999999864 234569999999875422 22344556678899999999887777653 699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|+++++. +|+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~-~~~d~v~~l~-~G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EA-VEADRIIVMD-SGKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HH-hcCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999764 999999999986 44 4589888886 58999
Q ss_pred EEcCCCc
Q 001048 807 YFGPLGQ 813 (1174)
Q Consensus 807 ~~G~~~~ 813 (1174)
+.|++++
T Consensus 224 ~~g~~~~ 230 (280)
T PRK13633 224 MEGTPKE 230 (280)
T ss_pred EecCHHH
Confidence 9998743
No 203
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-37 Score=372.93 Aligned_cols=222 Identities=22% Similarity=0.307 Sum_probs=185.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|..++++.+|+|.++|.++
T Consensus 5 ~l~~~nl~~~~-------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTF-------------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEe-------------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 47889998754 23579999999999999999999999999999999999876434689999999987
Q ss_pred Cccc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQHT----FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~~~----~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.... .++.++||+|++.+++.+||+||+.++...+.....+.++..++++++++.+++.+..++.++ +|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG-----NLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCH
Confidence 4321 245689999999888999999999887532211112233445678899999999877777654 6999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~-~G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIR-DGRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEE-CCEEeee
Confidence 9999999999999999999999999999999999999999999877999999999975 5667788888886 5899999
Q ss_pred cCCCcc
Q 001048 809 GPLGQH 814 (1174)
Q Consensus 809 G~~~~~ 814 (1174)
|++++.
T Consensus 225 ~~~~~~ 230 (506)
T PRK13549 225 RPAAGM 230 (506)
T ss_pred cccccC
Confidence 998654
No 204
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-36 Score=332.72 Aligned_cols=212 Identities=27% Similarity=0.412 Sum_probs=179.2
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~-------------~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFY-------------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEe-------------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 567777643 23479999999999999999999999999999999999887 468999999997653
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH
Q 001048 655 H-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733 (1174)
Q Consensus 655 ~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 733 (1174)
. ..++.++|++|++.+++.+|++||+.+....+ ........+.++++++.+++.+..++.. ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 2 23467899999998888899999998875433 1223344556788999999987777665 3699999999
Q ss_pred HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 734 v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|+++++. +|++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~-~G~~~~~~~~ 215 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMN-KGKIQQIGTP 215 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEecCCH
Confidence 99999999999999999999999999999999999999865 899999999975 5677889998887 5899998875
No 205
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-37 Score=345.98 Aligned_cols=220 Identities=19% Similarity=0.328 Sum_probs=177.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+.... ...+.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 488999988652100 001359999999999999999999999999999999999887 5689999999875
Q ss_pred Cc--------ccccceEEEEccCCCC-CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCC
Q 001048 653 VQ--------HTFARISGYCEQNDIH-SPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~--------~~~~~~~~~v~Q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 722 (1174)
.. ...++.++|++|++.. +...|++||+.++.... ....++..++++++++.++|. +..++.+
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~---- 148 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP---- 148 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh----
Confidence 31 1245678999998632 33469999999865321 223344456678899999994 5566554
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++.
T Consensus 149 -~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~- 225 (289)
T PRK13645 149 -FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMH- 225 (289)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-
Confidence 369999999999999999999999999999999999999999999999764 899999999975 5677889988887
Q ss_pred CcEEEEEcCCC
Q 001048 802 GGRIIYFGPLG 812 (1174)
Q Consensus 802 ~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 226 ~G~i~~~g~~~ 236 (289)
T PRK13645 226 EGKVISIGSPF 236 (289)
T ss_pred CCEEEEeCCHH
Confidence 58999999864
No 206
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=339.15 Aligned_cols=225 Identities=24% Similarity=0.287 Sum_probs=180.6
Q ss_pred CCCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEE
Q 001048 568 PFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGD 644 (1174)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~---~~~~G~ 644 (1174)
|.....++++|+++.+. ++++|+|+||++++||+++|+||||||||||+++|+|..++ .+.+|+
T Consensus 15 ~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 81 (267)
T PRK14237 15 PEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ 81 (267)
T ss_pred CCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE
Confidence 33445689999998542 35799999999999999999999999999999999998753 146899
Q ss_pred EEECCeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCccccccc
Q 001048 645 IRIGGYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG 719 (1174)
Q Consensus 645 i~~~g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 719 (1174)
|.++|+++.. ...++.++|++|++.+++ .||+||+.++.... .........+++.++++.+++.+..+....
T Consensus 82 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 82 ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred EEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 9999988642 123567999999988776 69999999875322 112233445667888999988532222222
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 720 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
. .++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|+++++
T Consensus 159 ~-~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l 235 (267)
T PRK14237 159 K-SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFF 235 (267)
T ss_pred C-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEE
Confidence 2 2357999999999999999999999999999999999999999999999864 799999999975 567888999888
Q ss_pred ecCcEEEEEcCCC
Q 001048 800 KNGGRIIYFGPLG 812 (1174)
Q Consensus 800 ~~~G~~v~~G~~~ 812 (1174)
. +|++++.|+++
T Consensus 236 ~-~G~i~~~g~~~ 247 (267)
T PRK14237 236 Y-LGDLIEYDKTR 247 (267)
T ss_pred E-CCEEEEeCCHH
Confidence 6 59999999864
No 207
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.2e-36 Score=378.23 Aligned_cols=214 Identities=28% Similarity=0.421 Sum_probs=176.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|++|.++ ..++.+|+|+|+++++||.+||+|+||||||||+|+|+|.++ |.+|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~-----------~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYA-----------PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcC-----------CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEe
Confidence 3699999999653 223569999999999999999999999999999999999987 568999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~ 721 (1174)
+.+ ..+++.++||+|++.++ +.|++||+.++. + ..+.+ .+.++++..+ +++..|+.+|+.
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf-~~ti~eNi~~~~----~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLF-SRSIRDNIALCN----P-GAPFE----HVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeeh-hhhHHHHHhcCC----C-CCCHH----HHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 754 35677899999998776 479999998742 1 22222 2333444433 344578888876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+ .+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|+++++.
T Consensus 591 g-~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~- 665 (694)
T TIGR01846 591 G-ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE- 665 (694)
T ss_pred C-CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe-
Confidence 5 4699999999999999999999999999999999999999999999985 5899999999975 456799999997
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|+.++
T Consensus 666 ~G~i~~~g~~~~ 677 (694)
T TIGR01846 666 KGQIAESGRHEE 677 (694)
T ss_pred CCEEEEeCCHHH
Confidence 599999999754
No 208
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-37 Score=340.05 Aligned_cols=221 Identities=22% Similarity=0.281 Sum_probs=176.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 689999998542 34699999999999999999999999999999999998653 13689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
+++.. ..+++.++|++|++.+++. ||.||+.++...+.. .....+..++++++++.+++.+........ .++
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHE-PGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhC-Ccc
Confidence 88642 1245678999999887774 999999987543211 112233355678899999986421111111 134
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++++. +|+
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~-~G~ 239 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH-LGN 239 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE-CCE
Confidence 6999999999999999999999999999999999999999999999865 789999999975 5567788888886 599
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 240 i~~~g~~~ 247 (267)
T PRK14235 240 LVEVGDTE 247 (267)
T ss_pred EEEeCCHH
Confidence 99999863
No 209
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.3e-37 Score=382.12 Aligned_cols=211 Identities=24% Similarity=0.368 Sum_probs=178.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|++|.++ .++++|+|+|+++++||.+||+|+||||||||+|+|+|..+ |.+|+|.+||.++
T Consensus 340 ~i~~~~v~f~y~------------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i 405 (592)
T PRK10790 340 RIDIDNVSFAYR------------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPL 405 (592)
T ss_pred eEEEEEEEEEeC------------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEh
Confidence 589999999753 12469999999999999999999999999999999999988 5689999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~ 722 (1174)
.+ ..+++.++||+|++.+|+ .|++|||.++. ..+. ++++++++.+|+ ++..|+.+|+.|
T Consensus 406 ~~~~~~~l~~~i~~v~Q~~~lF~-~Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g 474 (592)
T PRK10790 406 SSLSHSVLRQGVAMVQQDPVVLA-DTFLANVTLGR------DISE----EQVWQALETVQLAELARSLPDGLYTPLGEQG 474 (592)
T ss_pred hhCCHHHHHhheEEEccCCcccc-chHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 53 356788999999998876 59999999862 1122 235556666654 345688888765
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
. .||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++.+ ++|+|++||++ +....+|+++++. +
T Consensus 475 ~-~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii~l~-~ 549 (592)
T PRK10790 475 N-NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTILVLH-R 549 (592)
T ss_pred C-CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEE-C
Confidence 4 6999999999999999999999999999999999999999999999864 79999999997 4567799999986 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 550 G~i~~~G~~~~ 560 (592)
T PRK10790 550 GQAVEQGTHQQ 560 (592)
T ss_pred CEEEEEcCHHH
Confidence 99999999754
No 210
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.4e-37 Score=333.65 Aligned_cols=201 Identities=26% Similarity=0.392 Sum_probs=172.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHH
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|+.|
T Consensus 13 ~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 13 FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 38999999999999999999999999999999999877 5689999999886532 23467899999998888999999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
|+.++.... .....+..+.+.++++.+++.+..++.+ +.||||||||++|||||+.+|++++|||||+|||+
T Consensus 91 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~ 162 (235)
T cd03299 91 NIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDV 162 (235)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCH
Confidence 998865332 2233444556788999999987777765 36999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 759 RAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
.+++.+.+.|++++++ |+|+|++||+++ ++.+.+|+++++. +|++++.|+.+
T Consensus 163 ~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 215 (235)
T cd03299 163 RTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIML-NGKLIQVGKPE 215 (235)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEecCHH
Confidence 9999999999998765 999999999975 5667789999987 58999999864
No 211
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-37 Score=301.57 Aligned_cols=207 Identities=23% Similarity=0.334 Sum_probs=173.2
Q ss_pred cccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-------------c---cccc
Q 001048 596 QTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------------H---TFAR 659 (1174)
Q Consensus 596 ~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------------~---~~~~ 659 (1174)
++...+|++||++.+.|+++.|+|.|||||||+|+||.-+.+ |..|.|.+||+.+.. + ..|.
T Consensus 16 ~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs 93 (256)
T COG4598 16 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRT 93 (256)
T ss_pred cccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHH
Confidence 356789999999999999999999999999999999987666 679999999976421 0 1233
Q ss_pred eEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHH
Q 001048 660 ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVE 739 (1174)
Q Consensus 660 ~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~a 739 (1174)
..|+|+|+.+++.++||.||+.-+..-- -..++.+..++++..+..+|+.+..|... ..|||||+||++||||
T Consensus 94 ~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----~~LSGGQQQR~aIARa 166 (256)
T COG4598 94 RLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYP-----AHLSGGQQQRVAIARA 166 (256)
T ss_pred HhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCc-----cccCchHHHHHHHHHH
Confidence 4699999999999999999997653211 13467777888999999999988777542 3699999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 740 LVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 740 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.... ..+...+++.+. .|.+-+.|||++
T Consensus 167 LameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh-~G~iEE~G~P~q 238 (256)
T COG4598 167 LAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLH-QGKIEEEGPPEQ 238 (256)
T ss_pred HhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEee-cceecccCChHH
Confidence 999999999999999999999999999999999999999999997542 233456677775 699999999854
No 212
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-37 Score=340.68 Aligned_cols=220 Identities=24% Similarity=0.381 Sum_probs=177.3
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC------eEEEEEEE
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG------IIEGDIRI 647 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~------~~~G~i~~ 647 (1174)
++++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+|+|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVAR-------------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEE-------------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 5678887753 2357999999999999999999999999999999999987631 01899999
Q ss_pred CCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCC
Q 001048 648 GGYPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 648 ~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
+|.++.. ...++.++|++|++..++.+||+||+.++...... ......+..++++++++.+++.+..++.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV----- 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----
Confidence 9988643 22345689999998766779999999875321100 01111233456788999999987666554
Q ss_pred CCCCHHHHHHHHHHHHhh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHh
Q 001048 724 NGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAF 793 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~ 793 (1174)
..|||||||||+|||+|+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 469999999999999999 599999999999999999999999999999876 899999999975 566788
Q ss_pred cceeEEecCcEEEEEcCCCc
Q 001048 794 DDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 794 d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|+++++. +|++++.|++++
T Consensus 223 d~i~~l~-~G~i~~~g~~~~ 241 (272)
T PRK13547 223 DRIAMLA-DGAIVAHGAPAD 241 (272)
T ss_pred CEEEEEE-CCeEEEecCHHH
Confidence 9999887 599999998754
No 213
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-37 Score=336.56 Aligned_cols=210 Identities=25% Similarity=0.345 Sum_probs=174.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSS-------------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEe-------------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 47788888754 13469999999999999999999999999999999999876 5689999999876
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCH
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSg 728 (1174)
.. ...++.++|++|++.+++ .|++||+.+....+ . ...++++++++.+++. +..++.. ..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDV-----KNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCc-----ccCCH
Confidence 42 234567899999988776 69999998754321 1 1134577889999996 4455543 46999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++++. +|++++
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLN-KGILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEe-CCEEEE
Confidence 9999999999999999999999999999999999999999999874 999999999975 5667789888886 589999
Q ss_pred EcCCC
Q 001048 808 FGPLG 812 (1174)
Q Consensus 808 ~G~~~ 812 (1174)
.|+++
T Consensus 213 ~~~~~ 217 (241)
T PRK14250 213 YAKTY 217 (241)
T ss_pred eCCHH
Confidence 98863
No 214
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-37 Score=336.42 Aligned_cols=220 Identities=23% Similarity=0.298 Sum_probs=175.1
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC-CeEEEEEEECCeeC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG-GIIEGDIRIGGYPK 652 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 652 (1174)
++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+.+|+|.++|+++
T Consensus 3 ~~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFY-------------GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEE-------------CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 5677887754 234799999999999999999999999999999999998642 25689999999986
Q ss_pred Ccc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 653 VQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
... ..++.++|++|++.+++ .|++||+.++...+... .......++++++++.+++.+........ ..+.||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLKQ-NALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhcC-CcccCCHH
Confidence 432 34567899999988876 69999999875432110 01233445678899999985321111111 13469999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ |+|+|++||+++ ++.+.+|+++++. +|++++.|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFH-LGELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEE-CCEEEEEC
Confidence 99999999999999999999999999999999999999999865 899999999975 5667889888887 59999999
Q ss_pred CCC
Q 001048 810 PLG 812 (1174)
Q Consensus 810 ~~~ 812 (1174)
+.+
T Consensus 224 ~~~ 226 (246)
T PRK14269 224 ESK 226 (246)
T ss_pred CHH
Confidence 863
No 215
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-36 Score=322.20 Aligned_cols=190 Identities=57% Similarity=0.973 Sum_probs=160.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+... ..++++|+|+||++++||+++|+||||||||||+++|+|.....+.+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47889998865311 012469999999999999999999999999999999999753225689999999986
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
. ...++.++|++|++.+++.+|++||+.++... + .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhH
Confidence 5 34456789999999888999999999875310 0 39999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++.++.+.+|+++++.++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999987799999999998634577889988886448999875
No 216
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=335.83 Aligned_cols=221 Identities=21% Similarity=0.300 Sum_probs=177.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC--CC-eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--GG-IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478899987542 3469999999999999999999999999999999999864 21 3589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
+++.. ...++.++|++|++.+++.+|++||+.++..... .....+..++++++++.+++.+..+..... .+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKS-NAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC-CcC
Confidence 88642 1345679999999988888999999987643321 112333445678889999885421111111 234
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++. +|+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY-MGD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE-CCE
Confidence 7999999999999999999999999999999999999999999999976 689999999975 5667889888886 599
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 225 i~~~~~~~ 232 (252)
T PRK14256 225 LVECGETK 232 (252)
T ss_pred EEEeCCHH
Confidence 99999864
No 217
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-37 Score=352.09 Aligned_cols=192 Identities=23% Similarity=0.410 Sum_probs=168.0
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------HTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++.. ...++.++|++|++.+++++||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999887 568999999987642 1235679999999999999999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
+||+.++.. ....++++++++.+++.+..++.. +.|||||||||+|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988632 112356788999999988777765 369999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 757 DARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|+.++..+.+.|++++++ |+|+|++||+++ ++...+|+++++. +|+++..|++++
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~-~G~i~~~g~~~~ 215 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLE-QGKVKAFGPLEE 215 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEe-CCEEEEecCHHH
Confidence 999999999999999875 899999999975 6778889988886 599999999754
No 218
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-36 Score=339.73 Aligned_cols=216 Identities=21% Similarity=0.303 Sum_probs=175.2
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~ 648 (1174)
..++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 4689999988542 34699999999999999999999999999999999998652 1468999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----ccccccc
Q 001048 649 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVG 719 (1174)
Q Consensus 649 g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 719 (1174)
|+++.. ...++.++|++|++.+++ .||+||+.++...+ .... ...+.++++++.+++.. ..++.
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 987531 234567999999988877 59999999876432 1111 23455677888887642 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 720 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++++
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 346999999999999999999999999999999999999999999999864 799999999975 677889999999
Q ss_pred ec----------CcEEEEEcCCC
Q 001048 800 KN----------GGRIIYFGPLG 812 (1174)
Q Consensus 800 ~~----------~G~~v~~G~~~ 812 (1174)
.+ .|++++.|+++
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~~ 249 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNETK 249 (269)
T ss_pred eccccccccccccceEEEeCCHH
Confidence 74 36789999864
No 219
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=8.5e-37 Score=327.86 Aligned_cols=189 Identities=25% Similarity=0.395 Sum_probs=161.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---c----cccceEEEEccCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---H----TFARISGYCEQNDIHS 671 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~----~~~~~~~~v~Q~~~~~ 671 (1174)
+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. . ..++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 579999999999999999999999999999999999887 568999999988431 1 2346799999999888
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeC
Q 001048 672 PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 751 (1174)
+.+|++||+.+..... .....+..++++++++.+++.+..++.+ .+||||||||++|||||+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 8899999999875432 2233445567889999999987777765 3699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 752 PTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
||+|||+.++..+.+.|+++.++|+|+|++||+++ ..+.+|+++++
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999877999999999974 45677777653
No 220
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=341.00 Aligned_cols=217 Identities=24% Similarity=0.350 Sum_probs=180.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+.. ..++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 4789999886421 112459999999999999999999999999999999999987 5689999999986
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQ---HTFARISGYCEQNDI-HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.. ...++.++|++|++. .++..||.||+.++.... ....++..++++++++.+++.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234567999999974 567889999998865322 2233444567889999999987777654 46999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..+|+++++. +|++++
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~-~G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMK-AGEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999975 34 4688888886 589999
Q ss_pred EcCCC
Q 001048 808 FGPLG 812 (1174)
Q Consensus 808 ~G~~~ 812 (1174)
.|+++
T Consensus 221 ~g~~~ 225 (277)
T PRK13642 221 EAAPS 225 (277)
T ss_pred eCCHH
Confidence 99864
No 221
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=6.5e-37 Score=353.43 Aligned_cols=196 Identities=23% Similarity=0.391 Sum_probs=169.8
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------cccceEEEEccCCCCCCCCCH
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-------TFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++... ..++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999887 5689999999886421 235679999999999999999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
+||+.++.... ...+..++++++++.++|.+..++.. ..|||||||||+|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999875321 12334556889999999988777765 369999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 757 DARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|+.++..+.+.|++++++ |+|+|++||+++ ++...+|+++++. +|+++..|++++
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~~ 218 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLE-DGRVAAAGPIAE 218 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEEECCHHH
Confidence 999999999999999875 899999999975 5667789988886 599999998743
No 222
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-36 Score=333.12 Aligned_cols=212 Identities=24% Similarity=0.357 Sum_probs=175.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. ++. .|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYH-------------HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEEC-------------Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 56788887542 122 38999999999999999999999999999999877 56899999998764
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 654 QH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 654 ~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
.. ..++.++|++|++.+++.+|+.||+.+...... .. .+...++++++++.+++.+..++.+. .|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLPG-----QLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHH
Confidence 32 224568999999999899999999987532110 11 12345568889999999877777653 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
|++|||+++.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|+++++. +|++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVA-DGRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999999999999998764 899999999975 5667789888887 5999999986
Q ss_pred C
Q 001048 812 G 812 (1174)
Q Consensus 812 ~ 812 (1174)
+
T Consensus 215 ~ 215 (232)
T PRK10771 215 D 215 (232)
T ss_pred H
Confidence 4
No 223
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.1e-37 Score=378.35 Aligned_cols=214 Identities=25% Similarity=0.414 Sum_probs=179.3
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|++|.++ .+++++|+|+|++++|||.+||+||||||||||+|+|+|..+ |.+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~-----------~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYP-----------DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECC-----------CCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 3699999999652 123469999999999999999999999999999999999987 568999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC------cccccccCCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG------IKDSLVGLPG 722 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~------~~~~~~~~~~ 722 (1174)
+.+ ..+++.++||+|++.+++ .|++||+.++.. +.+ ++.+.++++.+++.+ ..||.+|+.+
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~-----~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~g 473 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAAP-----NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEGG 473 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCCC-----ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCCC
Confidence 654 346778999999987764 699999988631 112 234566777777643 4678888765
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ....+|+++++. +
T Consensus 474 -~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~-~ 548 (574)
T PRK11160 474 -RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMD-N 548 (574)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEe-C
Confidence 4699999999999999999999999999999999999999999999986 4899999999985 356789999987 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 549 G~i~~~g~~~~ 559 (574)
T PRK11160 549 GQIIEQGTHQE 559 (574)
T ss_pred CeEEEeCCHHH
Confidence 99999999753
No 224
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=344.46 Aligned_cols=223 Identities=22% Similarity=0.292 Sum_probs=180.1
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~ 648 (1174)
..++++|+++.+. .+.+.+|+|+||+|++||++||+||||||||||+++|+|..+. .+.+|+|.++
T Consensus 79 ~~i~~~nls~~y~-----------~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYM-----------NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEec-----------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3589999998653 1234699999999999999999999999999999999997642 2468999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHHHcCCCCcccccccCCC
Q 001048 649 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQID-SKTKAEFVNEVLQTIELDGIKDSLVGLPG 722 (1174)
Q Consensus 649 g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 722 (1174)
|+++.. ...++.++||||++.++ ..|++||+.|+.... ... .+...+.++++++.++|.+..++.++..+
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~-~~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~ 223 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKAG 223 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccC-CCcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCc
Confidence 998742 23466799999998876 589999999875322 122 22233456788888887544344455443
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ ++|+|++||+++ .+.+.+|+++++. +
T Consensus 224 -~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~-~ 299 (329)
T PRK14257 224 -NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFY-Q 299 (329)
T ss_pred -ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 46999999999999999999999999999999999999999999999875 799999999975 5666789998886 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|++++
T Consensus 300 G~i~e~g~~~~ 310 (329)
T PRK14257 300 GWIEEAGETKT 310 (329)
T ss_pred CEEEEeCCHHH
Confidence 99999999743
No 225
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.5e-36 Score=319.80 Aligned_cols=190 Identities=49% Similarity=0.878 Sum_probs=161.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCC--CCCeEEEEEEECCe
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK--TGGIIEGDIRIGGY 650 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~--~~~~~~G~i~~~g~ 650 (1174)
.++++|+++.+.... ...++.+|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|+
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 578999998653110 001257999999999999999999999999999999999987 6 56899999999
Q ss_pred eCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 651 PKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 651 ~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
++.....++.++|++|++.+++.+|++||+.+..... .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8754445677999999998888999999997643110 399999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|||++|||||+.+|++++|||||+|||+.+++.+.+.|++++++|+|+|+++|+++.++.+.+|+++++. +|++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~-~G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLS-QGRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEe-CCEEEecC
Confidence 9999999999999999999999999999999999999999987799999999998645677889998887 58998764
No 226
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.6e-36 Score=338.00 Aligned_cols=225 Identities=19% Similarity=0.285 Sum_probs=179.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+..+.. ....+.+++|+|+||++++||+++|+|||||||||||++|+|..+ |.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 3788999986531100 000012469999999999999999999999999999999999987 5689999999886
Q ss_pred Ccc---cccceEEEEccCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCC
Q 001048 653 VQH---TFARISGYCEQNDI--HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGL 726 (1174)
Q Consensus 653 ~~~---~~~~~~~~v~Q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~L 726 (1174)
... ..++.++|++|++. +.+.+|+.|++.+...... .....+..+.++++++.+++. +..+..+ ..|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-----HML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hhc
Confidence 421 22356899999874 5678899999988654321 123334456788899999994 5555543 369
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|+++++. +|++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~-~G~i 228 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMH-QGEV 228 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999865 899999999975 5666789888886 5999
Q ss_pred EEEcCCC
Q 001048 806 IYFGPLG 812 (1174)
Q Consensus 806 v~~G~~~ 812 (1174)
++.|+.+
T Consensus 229 ~~~~~~~ 235 (267)
T PRK15112 229 VERGSTA 235 (267)
T ss_pred EecCCHH
Confidence 9988763
No 227
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-36 Score=335.97 Aligned_cols=216 Identities=21% Similarity=0.304 Sum_probs=175.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC--C-eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--G-IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ . +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 489999988542 34699999999999999999999999999999999997642 1 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc----ccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI----KDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++. ||+||+.+...... .....+..++++++++.+++.+. .++.
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--- 152 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ--- 152 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCC---
Confidence 98642 1335679999999888775 99999988653321 11233344567788888888532 2332
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
.++||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|+++++.
T Consensus 153 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 228 (259)
T PRK14274 153 --ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFY 228 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 347999999999999999999999999999999999999999999999865 799999999975 5677889888886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|+++..|+++
T Consensus 229 -~G~i~~~g~~~ 239 (259)
T PRK14274 229 -MGELVECNDTN 239 (259)
T ss_pred -CCEEEEECCHH
Confidence 59999999864
No 228
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.2e-37 Score=344.98 Aligned_cols=223 Identities=29% Similarity=0.430 Sum_probs=186.6
Q ss_pred cCCCCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEE
Q 001048 566 ILPFEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDI 645 (1174)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i 645 (1174)
.+|.+...++++++++.. +..++++|+|+||++.+||.++|+||||||||||.|+|.|..+ |.+|.|
T Consensus 327 ~LP~P~g~L~Ve~l~~~P-----------Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~~G~V 393 (580)
T COG4618 327 PLPAPQGALSVERLTAAP-----------PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSV 393 (580)
T ss_pred CCCCCCceeeEeeeeecC-----------CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cCCCcE
Confidence 355556679999998832 1245799999999999999999999999999999999999887 579999
Q ss_pred EECCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHH-----HHHHHHHHHHHHcCCCCccccc
Q 001048 646 RIGGYPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSK-----TKAEFVNEVLQTIELDGIKDSL 717 (1174)
Q Consensus 646 ~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~-----~~~~~~~~~l~~l~l~~~~~~~ 717 (1174)
++||.++.. ..+-+.+||.||+-.+|+ .||.|||.= ...+.+.+ .+.+.+++++ +.+.+.+||.
T Consensus 394 RLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIaR-----f~~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~ 465 (580)
T COG4618 394 RLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIAR-----FGEEADPEKVIEAARLAGVHELI--LRLPQGYDTR 465 (580)
T ss_pred EecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHHh-----ccccCCHHHHHHHHHHcChHHHH--HhCcCCccCc
Confidence 999988754 345678999999877765 699999962 22222222 2233455655 4678889999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhccee
Q 001048 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLV 797 (1174)
Q Consensus 718 ~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~ 797 (1174)
+|+.|. .||||||||+++||||-.+|.+++||||-|+||...+..+.+.|.+++++|.|+|+++|+|+ +...+|+++
T Consensus 466 iG~~G~-~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkil 542 (580)
T COG4618 466 IGEGGA-TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKIL 542 (580)
T ss_pred cCCCCC-CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceee
Confidence 998764 69999999999999999999999999999999999999999999999999999999999985 678889998
Q ss_pred EEecCcEEEEEcCCCc
Q 001048 798 LMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 798 ~l~~~G~~v~~G~~~~ 813 (1174)
+|. +|++-.+|+.++
T Consensus 543 vl~-~G~~~~FG~r~e 557 (580)
T COG4618 543 VLQ-DGRIAAFGPREE 557 (580)
T ss_pred eec-CChHHhcCCHHH
Confidence 886 699999999854
No 229
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=368.08 Aligned_cols=220 Identities=27% Similarity=0.361 Sum_probs=184.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++
T Consensus 4 ~i~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAF-------------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEe-------------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 37888998754 23579999999999999999999999999999999999887 5689999999886
Q ss_pred Ccc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 653 VQH---T-FARISGYCEQNDIHSPNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 653 ~~~---~-~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
... . .++.++|++|++.+++.+||+||+.++...... ...+..+.+++++++++.+++.+..|..++ .||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 143 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELS 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCC
Confidence 421 1 245689999999889999999999986432110 112233445678899999999887777654 699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|+++.
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~-~G~i~~ 221 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFR-DGQFIA 221 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 5667889998887 599999
Q ss_pred EcCCCcc
Q 001048 808 FGPLGQH 814 (1174)
Q Consensus 808 ~G~~~~~ 814 (1174)
.|++++.
T Consensus 222 ~~~~~~~ 228 (501)
T PRK10762 222 EREVADL 228 (501)
T ss_pred ecCcCcC
Confidence 9998654
No 230
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.4e-36 Score=331.35 Aligned_cols=202 Identities=24% Similarity=0.345 Sum_probs=166.8
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC--eEEEEEEECCeeCCcccc-cceEEEEccCCC--CCCCCC
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG--IIEGDIRIGGYPKVQHTF-ARISGYCEQNDI--HSPNIT 675 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~~~~-~~~~~~v~Q~~~--~~~~lT 675 (1174)
+|+|+|+++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|+++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999987630 168999999998754332 357899999974 556789
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC---cccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG---IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 752 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 752 (1174)
+.||+.+...... .......++++++++.+++.+ ..++.+ ..|||||||||+|||+|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999987643221 112334566889999999973 344443 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 753 TSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 753 tsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|+++++. +|+++..|+++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 211 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMD-DGRIVERGTVK 211 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 9999999999999999999864 899999999975 5667889998886 59999999863
No 231
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-36 Score=333.53 Aligned_cols=216 Identities=25% Similarity=0.354 Sum_probs=174.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+++|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 377889987542 346999999999999999999999999999999999975421 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++ .|++||+.++..... ....++..++++++++.+++.+ ..++.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 88642 124567899999988777 899999998754321 1123334566788888888743 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++++.
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999864 899999999975 5667789888887
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 220 -~G~i~~~~~~~ 230 (250)
T PRK14240 220 -NGEIVEFGDTV 230 (250)
T ss_pred -CCEEEEeCCHH
Confidence 58999998863
No 232
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=333.99 Aligned_cols=216 Identities=24% Similarity=0.292 Sum_probs=175.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
-++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 478889987542 346999999999999999999999999999999999986531 2689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
.++.. ...++.++|++|++.+++ .|++||+.+...... .....+..++++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 98642 123567899999988876 899999998754321 1122344456778899988742 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+|+++++.
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 347999999999999999999999999999999999999999999999876 699999999975 5677789888886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 221 -~G~i~~~~~~~ 231 (251)
T PRK14270 221 -MGDLIEFNKTE 231 (251)
T ss_pred -CCeEEEeCCHH
Confidence 59999999864
No 233
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=335.21 Aligned_cols=217 Identities=23% Similarity=0.330 Sum_probs=176.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC-e--EEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-I--IEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~-~--~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+|+|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478899987542 346999999999999999999999999999999999986532 2 489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++ .|++||+.++...+. .....+..+.++++++.+++.+ ..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87632 123457999999988877 899999988754321 1223334456778888888742 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++.
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 347999999999999999999999999999999999999999999999865 699999999986 6778889998886
Q ss_pred c----CcEEEEEcCCC
Q 001048 801 N----GGRIIYFGPLG 812 (1174)
Q Consensus 801 ~----~G~~v~~G~~~ 812 (1174)
+ +|++++.|+++
T Consensus 224 ~~~~~~G~i~~~~~~~ 239 (259)
T PRK14260 224 TDESRIGQMVEFGVTT 239 (259)
T ss_pred ccCCCCceEEEeCCHH
Confidence 3 59999999874
No 234
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-36 Score=334.35 Aligned_cols=216 Identities=25% Similarity=0.327 Sum_probs=174.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCe---EEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI---IEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~---~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+..| .+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478899987542 3469999999999999999999999999999999999743112 489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
+++.. ..+++.++|++|++.+++ .||+||+.++...+. ........+.++++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87632 123567999999988776 899999998754321 1122233456778888888743 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++.
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999865 699999999975 5677889998887
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|++++.|+.+
T Consensus 222 -~G~i~~~g~~~ 232 (252)
T PRK14239 222 -DGDLIEYNDTK 232 (252)
T ss_pred -CCEEEEeCCHH
Confidence 58999999864
No 235
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-36 Score=336.77 Aligned_cols=215 Identities=25% Similarity=0.352 Sum_probs=174.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 588999988542 34699999999999999999999999999999999998652 14689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++. ||+||+.+....+. ... ...++++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87632 2345679999999887775 99999998754321 122 33456788899988853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++++.
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 347999999999999999999999999999999999999999999999976 489999999975 5566788876554
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
++|++++.|+++
T Consensus 254 ~~G~i~~~g~~~ 265 (285)
T PRK14254 254 TGGELVEFDDTD 265 (285)
T ss_pred eCCEEEEeCCHH
Confidence 579999998863
No 236
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-36 Score=326.29 Aligned_cols=191 Identities=26% Similarity=0.404 Sum_probs=163.0
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------HTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
|+||++++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999877 568999999987532 1234578999999988889999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
+||+.+..... .....+++++++++.+++.+..++.+ ..||||||||++|||+|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998864321 22334556788999999987666654 369999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 757 DARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|+.+++.+.+.|++++++ |+|+|++||+++ ++.+.+|+++++. +|++++.|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVME-DGRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 999999999999999875 899999999975 5667789888887 58998765
No 237
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-36 Score=332.62 Aligned_cols=221 Identities=21% Similarity=0.312 Sum_probs=174.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC--C-eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--G-IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g 649 (1174)
.-+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..++ . +.+|+|.++|
T Consensus 5 ~~~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 71 (251)
T PRK14244 5 HASVKNLNLWY-------------GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDG 71 (251)
T ss_pred EEEeeeEEEEE-------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECC
Confidence 35677887643 235799999999999999999999999999999999998642 1 3589999999
Q ss_pred eeCCcc-----cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQH-----TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~~-----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
+++... ..++.++|++|++.+++. |++||+.+....+. .........+.++++++.+++.+...+.... .+.
T Consensus 72 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 148 (251)
T PRK14244 72 IDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAF 148 (251)
T ss_pred EehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-Chh
Confidence 876321 245678999999888775 99999988743321 1112233445678889999986522111111 134
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||+++ .+.+.+|+++++. +|+
T Consensus 149 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~-~G~ 225 (251)
T PRK14244 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQ-SGR 225 (251)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEE-CCE
Confidence 799999999999999999999999999999999999999999999985 4899999999975 5667789998887 589
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 226 i~~~~~~~ 233 (251)
T PRK14244 226 IVEYNTTQ 233 (251)
T ss_pred EEEeCCHH
Confidence 99998863
No 238
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-36 Score=332.82 Aligned_cols=220 Identities=24% Similarity=0.279 Sum_probs=174.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFY-------------GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEE-------------CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 47788888754 2357999999999999999999999999999999999986632 3589999999
Q ss_pred eeCCc----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 650 YPKVQ----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 650 ~~~~~----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
.++.. ...++.++|++|++.+++ .||.||+.++..... ........+++.+.++.+++.+........ ...+
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKS-HAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhc-Cccc
Confidence 87631 234567999999988877 899999988643221 112233345677788888875321111111 1346
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++++. +|++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~-~G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFL-MGEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999976 699999999975 5677789888886 5999
Q ss_pred EEEcCCC
Q 001048 806 IYFGPLG 812 (1174)
Q Consensus 806 v~~G~~~ 812 (1174)
++.|+.+
T Consensus 223 ~~~g~~~ 229 (249)
T PRK14253 223 VEHDDTQ 229 (249)
T ss_pred EEeCCHH
Confidence 9999863
No 239
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-36 Score=332.40 Aligned_cols=217 Identities=24% Similarity=0.322 Sum_probs=174.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCe---EEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI---IEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~---~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+|+|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 477888887542 3579999999999999999999999999999999999875422 479999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----CcccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD----GIKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++.+|+.||+.++..... ....++..+.+++.++.+++. +..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 88642 1345678999999998888999999987653221 112233345566777777653 233443
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|+++++.
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999865 799999999975 5666789888886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 222 -~G~i~~~~~~~ 232 (252)
T PRK14272 222 -VGDLVEHGPTD 232 (252)
T ss_pred -CCEEEEeCCHH
Confidence 58999999864
No 240
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=4e-36 Score=332.68 Aligned_cols=214 Identities=21% Similarity=0.285 Sum_probs=174.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC--CeEEEEEEECCe
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--GIIEGDIRIGGY 650 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~--~~~~G~i~~~g~ 650 (1174)
.++++|+++.+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|+
T Consensus 4 ~l~~~~l~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQA--------------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEe--------------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 58899998853 24699999999999999999999999999999999998763 116899999999
Q ss_pred eCCcccc-cceEEEEccCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC---cccccccCCCCC
Q 001048 651 PKVQHTF-ARISGYCEQNDI--HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG---IKDSLVGLPGVN 724 (1174)
Q Consensus 651 ~~~~~~~-~~~~~~v~Q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~~ 724 (1174)
++..... ++.++|++|++. +.+..|+.+++.+.+.... ... ..++++++++.+++.+ ..++.+ .
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~~-----~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLYP-----F 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcCC-----c
Confidence 8753322 356899999974 4466899999876543221 111 2356788999999976 234433 4
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~-~G 217 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMS-HG 217 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEE-CC
Confidence 69999999999999999999999999999999999999999999999764 899999999975 5667788888886 58
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++++.|+++
T Consensus 218 ~i~~~~~~~ 226 (254)
T PRK10418 218 RIVEQGDVE 226 (254)
T ss_pred EEEEecCHH
Confidence 999999864
No 241
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.8e-36 Score=333.83 Aligned_cols=216 Identities=25% Similarity=0.311 Sum_probs=175.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee-
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP- 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 651 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 488899987542 3479999999999999999999999999999999999877 568999999987
Q ss_pred ----CCcc---c----ccceEEEEccCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-ccccc
Q 001048 652 ----KVQH---T----FARISGYCEQNDI--HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSL 717 (1174)
Q Consensus 652 ----~~~~---~----~~~~~~~v~Q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 717 (1174)
+... . .++.++|++|++. +.+.+|+.||+.+...... .....+..+.+.++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2346899999973 5677899999976532111 1122234556788999999863 44544
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcce
Q 001048 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 718 ~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
+ ..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.+|++
T Consensus 149 ~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 P-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred C-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3 469999999999999999999999999999999999999999999998765 899999999975 455678888
Q ss_pred eEEecCcEEEEEcCCC
Q 001048 797 VLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 797 ~~l~~~G~~v~~G~~~ 812 (1174)
+++. +|++++.|+++
T Consensus 223 ~~l~-~g~i~~~~~~~ 237 (258)
T PRK11701 223 LVMK-QGRVVESGLTD 237 (258)
T ss_pred EEEE-CCEEEEeCCHH
Confidence 8886 59999999864
No 242
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=367.94 Aligned_cols=220 Identities=25% Similarity=0.307 Sum_probs=183.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSF-------------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEc-------------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 47889998754 23579999999999999999999999999999999999886 5689999999886
Q ss_pred Cccc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhcc-CCC---CCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 653 VQHT----FARISGYCEQNDIHSPNITVEESIVFSAWLRL-STQ---IDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 653 ~~~~----~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~-~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
.... .++.++||+|++.+++.+||+||+.++..... ... .+..+..++++++++.+|+.+..++.++
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA----- 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----
Confidence 4321 23468999999988899999999987532110 001 1233445678899999999887777654
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~-~G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMK-DGS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCE
Confidence 69999999999999999999999999999999999999999999999878999999999975 5667788888886 599
Q ss_pred EEEEcCCCcc
Q 001048 805 IIYFGPLGQH 814 (1174)
Q Consensus 805 ~v~~G~~~~~ 814 (1174)
+++.|++++.
T Consensus 223 i~~~g~~~~~ 232 (510)
T PRK09700 223 SVCSGMVSDV 232 (510)
T ss_pred EeeecchhhC
Confidence 9999998653
No 243
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.2e-36 Score=373.59 Aligned_cols=215 Identities=30% Similarity=0.443 Sum_probs=174.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.++ .+++++|+|+|++++|||.++|+||||||||||+++|+|..+ |.+|+|.+||.++
T Consensus 316 ~i~~~~v~~~y~-----------~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~i 382 (544)
T TIGR01842 316 HLSVENVTIVPP-----------GGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADL 382 (544)
T ss_pred eEEEEEEEEEcC-----------CCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeh
Confidence 599999999653 123579999999999999999999999999999999999987 5689999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHH-----HHHHHHHHcCCCCcccccccCCCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAE-----FVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
.. ..+++.++||+|++.+++ .|++||+.++.. ..+.++..+ ..++.++. +++..|+.+|+.+ .
T Consensus 383 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~--l~~gl~t~~~~~g-~ 453 (544)
T TIGR01842 383 KQWDRETFGKHIGYLPQDVELFP-GTVAENIARFGE-----NADPEKIIEAAKLAGVHELILR--LPDGYDTVIGPGG-A 453 (544)
T ss_pred hhCCHHHHhhheEEecCCccccc-ccHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHh--CccccccccCCCc-C
Confidence 53 345678999999988876 599999985421 122222111 12233332 3345678887755 4
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++.++|+|+|++||+++ ..+.+|+++++. +|+
T Consensus 454 ~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~-~G~ 530 (544)
T TIGR01842 454 TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQ-DGR 530 (544)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEE-CCE
Confidence 69999999999999999999999999999999999999999999998766899999999975 467899999987 589
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+.+
T Consensus 531 i~~~g~~~ 538 (544)
T TIGR01842 531 IARFGERD 538 (544)
T ss_pred EEeeCCHH
Confidence 99999864
No 244
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-36 Score=331.44 Aligned_cols=219 Identities=25% Similarity=0.361 Sum_probs=175.1
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECCe
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGGY 650 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~ 650 (1174)
++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 78889987541 347999999999999999999999999999999999986521 26899999998
Q ss_pred eCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 651 PKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 651 ~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
++.. ...++.++|++|++.+++ .|++||+.++..... .......++.+++.++.+++.+..+.... ....+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELN-KPGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHh-CChhh
Confidence 7642 123567999999988877 899999998754321 11222344567788888888542111111 12347
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|+++++. +|++
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~-~G~i 223 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMY-RGEL 223 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999865 799999999975 5677889988887 5899
Q ss_pred EEEcCCC
Q 001048 806 IYFGPLG 812 (1174)
Q Consensus 806 v~~G~~~ 812 (1174)
+..|+++
T Consensus 224 ~~~g~~~ 230 (250)
T PRK14262 224 IEYGPTR 230 (250)
T ss_pred EEecCHH
Confidence 9999864
No 245
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-36 Score=336.16 Aligned_cols=219 Identities=24% Similarity=0.409 Sum_probs=174.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. +++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 588999987542 13579999999999999999999999999999999999877 5689999999886
Q ss_pred CcccccceEEEEccCCCCC--CCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 653 VQHTFARISGYCEQNDIHS--PNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
.....++.++|++|++.+. ...+++||+.++...... .........++++++++.+++.+..++.++ .||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG-----ELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 4322234689999987542 235789998754211000 001112334567788999999887777654 69999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++ +|++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~--~G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV--KGTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE--CCEEEeec
Confidence 999999999999999999999999999999999999999999877999999999975 566777877544 48999999
Q ss_pred CCCc
Q 001048 810 PLGQ 813 (1174)
Q Consensus 810 ~~~~ 813 (1174)
++++
T Consensus 224 ~~~~ 227 (272)
T PRK15056 224 PTET 227 (272)
T ss_pred CHHh
Confidence 8764
No 246
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.9e-36 Score=347.39 Aligned_cols=225 Identities=24% Similarity=0.322 Sum_probs=186.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC--eEEEEEEECCe
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG--IIEGDIRIGGY 650 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 650 (1174)
-++++||+..+... .+...+++||||++.+||++||+|.|||||||+.++|.|..+.+ ..+|+|.++|.
T Consensus 5 lL~V~nL~v~~~~~---------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATD---------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecC---------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 47888888765432 12357999999999999999999999999999999999987643 35899999998
Q ss_pred eCCcc-------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCC
Q 001048 651 PKVQH-------TFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP 721 (1174)
Q Consensus 651 ~~~~~-------~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 721 (1174)
++... .+.+.++|++|++ .+.|.+||.+.+.-....+.. .+.++.++++.++++.+||.+.... ..
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~ 150 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DR 150 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---cc
Confidence 65321 1335799999996 456779999998877665532 3367788889999999999886654 22
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
.+++|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|+||||+. -+.+.+|++++|.
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEE
Confidence 3578999999999999999999999999999999999999999999999985 4999999999985 4667788888886
Q ss_pred cCcEEEEEcCCCc
Q 001048 801 NGGRIIYFGPLGQ 813 (1174)
Q Consensus 801 ~~G~~v~~G~~~~ 813 (1174)
+|++|+.|++++
T Consensus 230 -~G~iVE~G~~~~ 241 (539)
T COG1123 230 -KGEIVETGPTEE 241 (539)
T ss_pred -CCEEEEecCHHH
Confidence 599999999865
No 247
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.5e-35 Score=365.90 Aligned_cols=214 Identities=28% Similarity=0.381 Sum_probs=177.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||+|+++ ..++++|+|+|+++++||.++|+|+||||||||+|+|+|..+ |.+|+|.+||.++
T Consensus 330 ~i~~~~v~f~y~-----------~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~~i 396 (571)
T TIGR02203 330 DVEFRNVTFRYP-----------GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGHDL 396 (571)
T ss_pred eEEEEEEEEEcC-----------CCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEeH
Confidence 599999999653 123579999999999999999999999999999999999987 5689999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~ 722 (1174)
.. ..+++.++||+|++.++ +.|++|||.++. +.+.+. ++++++++.+++ ++..|+.+|+.|
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf-~~Ti~~Ni~~~~----~~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g 467 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLF-NDTIANNIAYGR----TEQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGENG 467 (571)
T ss_pred HhcCHHHHHhhceEEccCcccc-cccHHHHHhcCC----CCCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCCC
Confidence 43 34677899999998765 569999998752 112222 335555665554 345688888765
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
+.||||||||++||||++++|+|++||||||+||+.+++.+.+.|+++. +++|+|++||++ +..+.+|+++.+. +
T Consensus 468 -~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~-~ 542 (571)
T TIGR02203 468 -VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMD-D 542 (571)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEe-C
Confidence 4699999999999999999999999999999999999999999999875 479999999987 4678899999996 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 543 g~i~~~g~~~~ 553 (571)
T TIGR02203 543 GRIVERGTHNE 553 (571)
T ss_pred CEEEeeCCHHH
Confidence 99999999753
No 248
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.5e-36 Score=322.74 Aligned_cols=201 Identities=22% Similarity=0.302 Sum_probs=171.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+++++||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSR-------------NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEec-------------CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 58889998753 23469999999999999999999999999999999999887 5689999999887
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
.....++.++|++|++.+++.+|++||+.+....+. . ...+.++++++.+++.+..++.++ .|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLVR-----QLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCChh-----hCCHHHHH
Confidence 543344568999999888888999999988654321 1 123456788899999877777653 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
|++|||+++.+|++++|||||+|||+.+++.+.+.|++++++|+|+|++||+++ ++.+.+|+++.+.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999999888999999999986 6778888887774
No 249
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=100.00 E-value=2.7e-35 Score=381.67 Aligned_cols=136 Identities=21% Similarity=0.325 Sum_probs=108.9
Q ss_pred CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhh---cCCc
Q 001048 670 HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELV---ANPS 745 (1174)
Q Consensus 670 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~---~~p~ 745 (1174)
.+...||.|+|.++..-........++..+++ +.++.+||.+. .+... ..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 44578999999987542211112233444556 47888999765 45554 369999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCCCc
Q 001048 746 IIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPLGQ 813 (1174)
Q Consensus 746 illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~~ 813 (1174)
+++|||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|+++.|. ++|+++..|++++
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~--~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH--VVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 99999999999999999999999999888999999999975 348889999984 3689999999865
No 250
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=3.7e-36 Score=326.63 Aligned_cols=211 Identities=19% Similarity=0.322 Sum_probs=172.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~i~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLA-------------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEee-------------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 48899998754 23579999999999999999999999999999999999876 5689999999876
Q ss_pred Ccc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCH
Q 001048 653 VQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSg 728 (1174)
... ..++.++|++|++.+++ .|++||+.+....+.. . ...++++++++.+++. ...++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKNI-----AELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCCc-----ccCCH
Confidence 431 24567899999988776 5999999886433211 1 1234567899999985 3455554 46999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
||||||+|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+ +.+|+++++.+++..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 9999999999999999999999999999999999999999998764 899999999975 34 57999999965565666
Q ss_pred EcCC
Q 001048 808 FGPL 811 (1174)
Q Consensus 808 ~G~~ 811 (1174)
.|..
T Consensus 219 ~~~~ 222 (225)
T PRK10247 219 EARY 222 (225)
T ss_pred hhhh
Confidence 6653
No 251
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-36 Score=287.60 Aligned_cols=215 Identities=27% Similarity=0.369 Sum_probs=178.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
++.++++++.+ +..++|.||+++.++||.+.++||||||||||++.|.-+.. |.+|+..+.|...
T Consensus 2 sirv~~in~~y-------------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~f 66 (242)
T COG4161 2 SIQLNGINCFY-------------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHF 66 (242)
T ss_pred ceEEccccccc-------------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEeccccc
Confidence 35667776543 34689999999999999999999999999999999986554 5689999877542
Q ss_pred C------c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCC
Q 001048 653 V------Q---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 653 ~------~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
+ + ...|+.+|+|+|+-.++|++||.||+.-+. .+. .+.++++...++.++++.+.|.+.+|+..
T Consensus 67 d~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p----- 139 (242)
T COG4161 67 DFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYP----- 139 (242)
T ss_pred ccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCc-----
Confidence 2 1 235678999999999999999999997653 332 24567777888999999999999998863
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
-.|||||+|||+|||||+.+|++|++||||++|||+-..++.+.+++++..|.|-+++||..+ -..+.+.+++.+. +|
T Consensus 140 lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme-~g 217 (242)
T COG4161 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYME-NG 217 (242)
T ss_pred eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeee-cC
Confidence 369999999999999999999999999999999999999999999999999999999999754 2334456666665 69
Q ss_pred EEEEEcCC
Q 001048 804 RIIYFGPL 811 (1174)
Q Consensus 804 ~~v~~G~~ 811 (1174)
+||+.|+.
T Consensus 218 ~ive~g~a 225 (242)
T COG4161 218 HIVEQGDA 225 (242)
T ss_pred eeEeecch
Confidence 99999986
No 252
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-36 Score=333.46 Aligned_cols=221 Identities=24% Similarity=0.328 Sum_probs=176.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~ 648 (1174)
..++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3588999998542 34699999999999999999999999999999999998652 1368999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCC
Q 001048 649 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 649 g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
|.++.. ...++.++|++|++.+++. |++||+.+...... .......++.++++++.+++.+......+. ..
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~ 166 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHE-NA 166 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhC-Cc
Confidence 988642 1345679999999888775 99999988754321 112223345677888888885321111111 13
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++||+++ ++.+.+|+++++. +|
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~-~G 243 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMY-MG 243 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEE-CC
Confidence 46999999999999999999999999999999999999999999999976 799999999975 5667789888886 59
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++++.|+++
T Consensus 244 ~i~~~g~~~ 252 (272)
T PRK14236 244 KLVEYGDTD 252 (272)
T ss_pred EEEecCCHH
Confidence 999999864
No 253
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=6.6e-36 Score=323.90 Aligned_cols=211 Identities=27% Similarity=0.435 Sum_probs=175.0
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+... .+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5778888754210 012579999999999999999999999999999999999877 56999999999764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 654 QH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ..++.++|++|++.+++.+|+.||+.++..... ....++..++++++++.+++.+..++.. +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 21 235679999999988888999999998754321 1234445567889999999987666654 4699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|+|++||+++ ..+.+|+++++. +|++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~-~g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHME-DGKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEE-CCEE
Confidence 9999999999999999999999999999999999999999999976 4899999999974 567889888886 5775
No 254
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-36 Score=333.98 Aligned_cols=220 Identities=22% Similarity=0.311 Sum_probs=177.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 588999998642 357999999999999999999999999999999999987631 4689999999
Q ss_pred eeCCc----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 650 YPKVQ----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 650 ~~~~~----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
.++.. ...++.++|++|++.+++ .|++||+.++.... ......+..+.+.++++.+++.+..++.... .+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLSD-SPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhhC-Cccc
Confidence 87642 134567899999988877 89999998864322 1123334445567888888886532222211 2347
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++. +|++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~-~G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFF-DGRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999876 589999999975 5677889888887 5999
Q ss_pred EEEcCCC
Q 001048 806 IYFGPLG 812 (1174)
Q Consensus 806 v~~G~~~ 812 (1174)
++.|+++
T Consensus 241 ~~~g~~~ 247 (276)
T PRK14271 241 VEEGPTE 247 (276)
T ss_pred EEeCCHH
Confidence 9999864
No 255
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=9.4e-37 Score=334.78 Aligned_cols=210 Identities=27% Similarity=0.430 Sum_probs=162.3
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+. ..++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-----------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (237)
T cd03252 2 TFEHVRFRYK-----------PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLAL 68 (237)
T ss_pred EEEEEEEecC-----------CCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHh
Confidence 5677776431 123569999999999999999999999999999999999987 568999999987542
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHH-----HHHHHHHHHc--CCCCcccccccCCCCC
Q 001048 655 ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKA-----EFVNEVLQTI--ELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 655 ---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~~~ 724 (1174)
...++.++|++|++.++ ..||.||+.+... ........ ...++.++.+ ++....+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~ 137 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLF-NRSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GA 137 (237)
T ss_pred cCHHHHhhcEEEEcCCchhc-cchHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CC
Confidence 23456799999998765 4799999987431 11111111 1122334433 333322332 34
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ .+ +.+|+++++. +|+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~-~G~ 213 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVME-KGR 213 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEE-CCE
Confidence 7999999999999999999999999999999999999999999999864 899999999975 34 5688888886 589
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 214 i~~~~~~~ 221 (237)
T cd03252 214 IVEQGSHD 221 (237)
T ss_pred EEEEcCHH
Confidence 99999864
No 256
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=4.1e-36 Score=317.88 Aligned_cols=179 Identities=25% Similarity=0.361 Sum_probs=151.6
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-----ccccceEEEEccCCC-CC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-----HTFARISGYCEQNDI-HS 671 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~Q~~~-~~ 671 (1174)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++. .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3579999999999999999999999999999999999887 568999999988631 123457899999873 33
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeC
Q 001048 672 PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 751 (1174)
+..||+||+.++.... .....+..++++++++.+++.+..++.+ ..||||||||++|||||+.+|++++|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4579999999865322 2233444566888999999987777765 3699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 752 PTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
||+|||+.++..+.+.|++++++|+|||++||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999874
No 257
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-36 Score=330.69 Aligned_cols=220 Identities=26% Similarity=0.306 Sum_probs=174.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCe---EEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI---IEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~---~~G~i~~~g 649 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|.....+ .+|+|.++|
T Consensus 6 ~i~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWY-------------GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEE-------------CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 48889998854 23579999999999999999999999999999999999754212 489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
+++.. ...++.++|++|++.+++ .||+||+.++...+. .....+.++.+.++++.+++.+........ ...
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLHD-SAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCc-ccHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhhc-Chh
Confidence 88643 123567899999988877 499999998754331 112233345677888888875321111111 134
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++++. +|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~-~G~ 225 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY-LGK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE-CCE
Confidence 6999999999999999999999999999999999999999999999876 699999999975 5667789888886 599
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
++..|+++
T Consensus 226 i~~~g~~~ 233 (253)
T PRK14261 226 LIEFDKTT 233 (253)
T ss_pred EEEcCCHH
Confidence 99999863
No 258
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-36 Score=330.36 Aligned_cols=216 Identities=23% Similarity=0.321 Sum_probs=174.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC--C-eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--G-IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g 649 (1174)
.++++|+++.+. ++++|+|+|++|++||+++|+||||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478899988542 34799999999999999999999999999999999998652 1 3589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++ .||+||+.++..... ....+...+.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87632 124567999999988775 799999988643321 1122233456778888888842 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
..+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++++.
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 347999999999999999999999999999999999999999999999864 799999999975 5667788888886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|+++..|+.+
T Consensus 221 -~G~i~~~~~~~ 231 (251)
T PRK14251 221 -NGDLIEAGPTE 231 (251)
T ss_pred -CCEEEEeCCHH
Confidence 59999998863
No 259
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=6.6e-36 Score=324.07 Aligned_cols=192 Identities=26% Similarity=0.372 Sum_probs=160.0
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++... ..+...+.+.+||
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~tv 101 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELTG 101 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCcH
Confidence 45679999999999999999999999999999999999877 569999999986421 1112334577999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
+||+.+..... .....+..++++++++.+++.+..++.++ +||||||||++|||+|+.+|++++|||||+||
T Consensus 102 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 102 RENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99999875432 12233445567888999999887777654 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 757 DARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|++++.|
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 224 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLE-KGKIRFDG 224 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 999999999999999877899999999975 5666788888886 58998765
No 260
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-36 Score=334.98 Aligned_cols=217 Identities=22% Similarity=0.317 Sum_probs=174.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC--C-CeEEEEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIEGDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~ 648 (1174)
..++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ + .+.+|+|.++
T Consensus 38 ~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~ 104 (286)
T PRK14275 38 PHVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFD 104 (286)
T ss_pred eEEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEEC
Confidence 3588999988542 2469999999999999999999999999999999999743 1 1368999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----Cccccccc
Q 001048 649 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD----GIKDSLVG 719 (1174)
Q Consensus 649 g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~ 719 (1174)
|+++.. ...++.++|++|++.+++. ||.||+.++...+. ........+++.++++.+++. +..++.
T Consensus 105 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 179 (286)
T PRK14275 105 GEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKN-- 179 (286)
T ss_pred CEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCC--
Confidence 987632 1245679999999888774 99999998754321 112223345677888888874 223333
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 720 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|++++|
T Consensus 180 ---~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L 254 (286)
T PRK14275 180 ---ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFF 254 (286)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 346999999999999999999999999999999999999999999999875 689999999975 566778999888
Q ss_pred ecCcEEEEEcCCC
Q 001048 800 KNGGRIIYFGPLG 812 (1174)
Q Consensus 800 ~~~G~~v~~G~~~ 812 (1174)
. +|++++.|+++
T Consensus 255 ~-~G~i~~~g~~~ 266 (286)
T PRK14275 255 Y-EGVLVEHAPTA 266 (286)
T ss_pred E-CCEEEEeCCHH
Confidence 7 58999999864
No 261
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.2e-36 Score=320.58 Aligned_cols=198 Identities=24% Similarity=0.287 Sum_probs=164.6
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACER-------------DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEE-------------CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 5677787653 23469999999999999999999999999999999999877 56899999998864
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 654 Q--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 654 ~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
. ...++.++|++|++.+++.+|+.||+.+....+. . ...++++++++.+|+.+..|+.+ +.||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHH
Confidence 3 2345678999999988899999999998754321 1 22356788999999987767654 36999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
||++|||||+++|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++ ....|+.+.++
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~~~~~ 201 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL--PVASDKVRKLR 201 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh--hhccCCceEEe
Confidence 9999999999999999999999999999999999999999877899999999975 34446544443
No 262
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=329.48 Aligned_cols=220 Identities=20% Similarity=0.266 Sum_probs=176.4
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~ 648 (1174)
..+..+++++++ +++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFY-------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEe-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 346667776543 2457999999999999999999999999999999999987531 258999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCC
Q 001048 649 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 649 g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
|+++.. ...++.++|++|++.++ .+|+.||+.++...+. . ..+..+.++++++.+++.+..+...+. ..
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKV-SG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhC-Cc
Confidence 988632 13456799999998776 6999999998754321 1 123345688889999885432222221 23
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe---
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK--- 800 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~--- 800 (1174)
+.||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+|+++++.
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 57999999999999999999999999999999999999999999999964 799999999975 5677889999995
Q ss_pred ----cCcEEEEEcCCC
Q 001048 801 ----NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ----~~G~~v~~G~~~ 812 (1174)
++|++++.|+.+
T Consensus 226 ~~~~~~G~i~~~g~~~ 241 (261)
T PRK14263 226 SQGTRTGYLVEMGPTA 241 (261)
T ss_pred ccccCCceEEEeCCHH
Confidence 469999999864
No 263
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-35 Score=332.14 Aligned_cols=216 Identities=23% Similarity=0.314 Sum_probs=173.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC--C-CeEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 488999988542 3579999999999999999999999999999999999643 1 14689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++. |++||+.++..... ........+.+.+.++.+++.+ ..++.
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 88642 1235679999999888774 99999988643221 1112223455677888888742 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++++.
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999965 689999999975 5667889988886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 238 -~G~i~~~~~~~ 248 (268)
T PRK14248 238 -NGDLVEYDQTE 248 (268)
T ss_pred -CCEEEEeCCHH
Confidence 59999999864
No 264
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.8e-36 Score=343.31 Aligned_cols=219 Identities=28% Similarity=0.420 Sum_probs=192.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
-++.+|++.++ +..++|+||||++++||++||+|.||||||||+|+|+|.++ |++|+|.+||++.
T Consensus 8 ll~~~~i~K~F-------------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSF-------------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEc-------------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEc
Confidence 47788887643 45789999999999999999999999999999999999988 6799999999986
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 653 VQH----TFARISGYCEQNDIHSPNITVEESIVFSAWLRL-STQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 653 ~~~----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
... ....-|+.|+|+..+.|++||.|||.++...+. ...++.+...+++.++++.+++....+++++ +||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCC
Confidence 532 234568999999999999999999998865443 2345777788889999999998655788876 599
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
+||||.|+|||||..+++||+||||||+|+......+.+.+++++++|.++|++||+++ ++++.+|++.+|. +|+.+.
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlR-DG~~v~ 225 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLR-DGRVVG 225 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEe-CCEEee
Confidence 99999999999999999999999999999999999999999999999999999999997 8999999999997 599999
Q ss_pred EcCC-Cc
Q 001048 808 FGPL-GQ 813 (1174)
Q Consensus 808 ~G~~-~~ 813 (1174)
.++. ++
T Consensus 226 ~~~~~~~ 232 (500)
T COG1129 226 TRPTAAE 232 (500)
T ss_pred ecccccC
Confidence 9983 44
No 265
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-35 Score=330.53 Aligned_cols=222 Identities=21% Similarity=0.304 Sum_probs=177.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 488999988542 246999999999999999999999999999999999987632 2479999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
+++.. ...++.++|++|++.+++ .|++||+.+...... .....+..+++.++++.+++.+..+...+. .+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 87531 133567899999988877 899999988653321 112233345678889999875422112221 234
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecC-
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNG- 802 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~- 802 (1174)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|+|++||+++ ++.+.+|+++++.++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999875 4899999999975 677788888888642
Q ss_pred ---cEEEEEcCCC
Q 001048 803 ---GRIIYFGPLG 812 (1174)
Q Consensus 803 ---G~~v~~G~~~ 812 (1174)
|++++.|+++
T Consensus 229 ~~~G~i~~~~~~~ 241 (261)
T PRK14258 229 NRIGQLVEFGLTK 241 (261)
T ss_pred CcCceEEEeCCHH
Confidence 8999999874
No 266
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.2e-35 Score=330.77 Aligned_cols=225 Identities=24% Similarity=0.361 Sum_probs=179.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+.... ..+ ...++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~---~~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---ccc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 77889988653100 000 0013579999999999999999999999999999999999876 56999999998764
Q ss_pred cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCC
Q 001048 654 QH------TFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVN 724 (1174)
Q Consensus 654 ~~------~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 724 (1174)
.. ..++.++|++|++ .+.+..|+.||+.+..... ......+..++++++++.+++. +..++.. +
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRP-----P 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCC-----c
Confidence 31 2356799999997 3567899999997653211 1223344455788999999986 4555543 4
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|++||+++ .+.+.+|+++++. +|
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~-~G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD-NG 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE-CC
Confidence 69999999999999999999999999999999999999999999999765 899999999975 5666789888886 58
Q ss_pred EEEEEcCCCc
Q 001048 804 RIIYFGPLGQ 813 (1174)
Q Consensus 804 ~~v~~G~~~~ 813 (1174)
++++.|++++
T Consensus 229 ~i~~~g~~~~ 238 (268)
T PRK10419 229 QIVETQPVGD 238 (268)
T ss_pred EEeeeCChhh
Confidence 9999998754
No 267
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6.7e-36 Score=363.22 Aligned_cols=212 Identities=24% Similarity=0.371 Sum_probs=181.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQY-------------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEe-------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 48889998854 23579999999999999999999999999999999999887 5689999999876
Q ss_pred Cccc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQHT----FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~~~----~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.... .++.+||++|++.+++.+||+||+.++... ..+.+++++++++.+++.+..++.++ .|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAG-----SLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChh-----hCCH
Confidence 4321 224589999999899999999999875311 12334668889999999877777654 6999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~-~G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMR-DGTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEe
Confidence 9999999999999999999999999999999999999999999888999999999975 5667789888886 5899999
Q ss_pred cCCCc
Q 001048 809 GPLGQ 813 (1174)
Q Consensus 809 G~~~~ 813 (1174)
|++++
T Consensus 222 g~~~~ 226 (510)
T PRK15439 222 GKTAD 226 (510)
T ss_pred cChHH
Confidence 98764
No 268
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=9.1e-36 Score=362.47 Aligned_cols=220 Identities=21% Similarity=0.324 Sum_probs=180.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++++|+|+||++++||+++|+||||||||||+++|+|..++++.+|+|.++|+++.
T Consensus 2 l~i~~l~~~~-------------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTF-------------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEe-------------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 5678888754 235799999999999999999999999999999999998764235899999998864
Q ss_pred ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCCcc-cccccCCCCCCCC
Q 001048 654 QHT----FARISGYCEQNDIHSPNITVEESIVFSAWLRLST-QIDSKTKAEFVNEVLQTIELDGIK-DSLVGLPGVNGLS 727 (1174)
Q Consensus 654 ~~~----~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~LS 727 (1174)
... .++.++||+|++.+++.+||+||+.++....... ....++..++++++++.+++.+.. ++.+ ..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCC
Confidence 321 2356899999998889999999998864322111 122334456788999999997654 3444 3699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~-~G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIR-DGQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEe-CCeEee
Confidence 99999999999999999999999999999999999999999999888999999999975 5667789888886 589999
Q ss_pred EcCCCc
Q 001048 808 FGPLGQ 813 (1174)
Q Consensus 808 ~G~~~~ 813 (1174)
.|++++
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 998764
No 269
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=6.1e-36 Score=319.08 Aligned_cols=185 Identities=28% Similarity=0.340 Sum_probs=158.2
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS 89 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHHhhhheEEeccccccCCCcC
Confidence 3579999999999999999999999999999999999887 568999999987542 234567899999988888999
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
++||+.+.... . ..++++++++.+++.+..++.+ ..||||||||++|||+|+.+|++++|||||+|
T Consensus 90 v~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~ 155 (201)
T cd03231 90 VLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTA 155 (201)
T ss_pred HHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 99999875311 1 2345788899999987777654 36999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 756 LDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
||+.++..+.+.|++++++|+|+|++||++. +....+++++.+
T Consensus 156 LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 156 LDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999998877999999999975 566666666554
No 270
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=328.65 Aligned_cols=220 Identities=22% Similarity=0.302 Sum_probs=173.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 377888887542 346999999999999999999999999999999999987632 2369999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
.++.. ...++.++|++|++.+++. |++||+.++...+.. ...+...+.++++++.+++.+..+..... ...
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLHK-SGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhhC-Ccc
Confidence 87642 1345679999999888774 999999987543211 11222345567778877775321111111 234
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ .+.+.+|+++++. +|+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~-~G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLL-TGD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEe-CCe
Confidence 799999999999999999999999999999999999999999999985 5899999999975 5667788888886 589
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 224 i~~~~~~~ 231 (251)
T PRK14249 224 LVEYGRTG 231 (251)
T ss_pred EEEeCCHH
Confidence 99999864
No 271
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=331.52 Aligned_cols=218 Identities=21% Similarity=0.272 Sum_probs=174.7
Q ss_pred CccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEE
Q 001048 570 EPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIR 646 (1174)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~ 646 (1174)
++..++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.
T Consensus 17 ~~~~l~~~nl~~~~-------------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (274)
T PRK14265 17 DHSVFEVEGVKVFY-------------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLL 83 (274)
T ss_pred CCceEEEeeEEEEe-------------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEE
Confidence 34468999998854 2346999999999999999999999999999999999986421 2589999
Q ss_pred ECCeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----ccccc
Q 001048 647 IGGYPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSL 717 (1174)
Q Consensus 647 ~~g~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~ 717 (1174)
++|+++.. ...++.++|++|++.+++ .||.||+.++...+. .. ....+.+++.++.+++.. ..++.
T Consensus 84 ~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (274)
T PRK14265 84 YRDRNIYDSQINSVKLRRQVGMVFQRPNPFP-KSIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK 158 (274)
T ss_pred ECCEecccccchhHHHhhcEEEEccCCcccc-ccHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC
Confidence 99987632 134567999999988776 499999988643321 11 122344566777777642 22332
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhccee
Q 001048 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLV 797 (1174)
Q Consensus 718 ~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~ 797 (1174)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++
T Consensus 159 -----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~ 231 (274)
T PRK14265 159 -----GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTA 231 (274)
T ss_pred -----cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEE
Confidence 346999999999999999999999999999999999999999999999975 799999999985 6778889999
Q ss_pred EEe--------cCcEEEEEcCCC
Q 001048 798 LMK--------NGGRIIYFGPLG 812 (1174)
Q Consensus 798 ~l~--------~~G~~v~~G~~~ 812 (1174)
+|. ++|++++.|+++
T Consensus 232 ~l~~~~~~~~~~~G~~~~~g~~~ 254 (274)
T PRK14265 232 FFNTEIDEYGKRRGKLVEFSPTE 254 (274)
T ss_pred EEecccccccccCceEEEeCCHH
Confidence 996 269999999974
No 272
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=7.7e-35 Score=344.83 Aligned_cols=190 Identities=26% Similarity=0.354 Sum_probs=151.1
Q ss_pred ccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 571 PLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
+..++++|+++.+. +++.+++++||.|.+|+.+||+||||+|||||||+|+|... +.+|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~ 384 (530)
T COG0488 319 KLVLEFENVSKGYD------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGET 384 (530)
T ss_pred CeeEEEeccccccC------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCc
Confidence 45689999988542 22689999999999999999999999999999999999776 44899887421
Q ss_pred eCCcccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCH
Q 001048 651 PKVQHTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLST 728 (1174)
Q Consensus 651 ~~~~~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSg 728 (1174)
-.+||..|+. .+.+..|+.|++.-... ... +..+...+..+++..- ..+++ +.|||
T Consensus 385 --------v~igyf~Q~~~~l~~~~t~~d~l~~~~~-----~~~----e~~~r~~L~~f~F~~~~~~~~v-----~~LSG 442 (530)
T COG0488 385 --------VKIGYFDQHRDELDPDKTVLEELSEGFP-----DGD----EQEVRAYLGRFGFTGEDQEKPV-----GVLSG 442 (530)
T ss_pred --------eEEEEEEehhhhcCccCcHHHHHHhhCc-----ccc----HHHHHHHHHHcCCChHHHhCch-----hhcCH
Confidence 2479999985 44477899998864321 111 4557788999988643 34444 36999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
|||.||.+|+.++.+|.+|+|||||+.||..+...+.++|... .-|||+||||.. -+-..+++++.+.
T Consensus 443 GEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~ 510 (530)
T COG0488 443 GEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVE 510 (530)
T ss_pred hHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEc
Confidence 9999999999999999999999999999999999999999876 469999999864 3445566666665
No 273
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2.8e-35 Score=326.19 Aligned_cols=221 Identities=23% Similarity=0.322 Sum_probs=174.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 488999987541 3469999999999999999999999999999999999731125689999999886
Q ss_pred Ccc---cccc-eEEEEccCCCCCCCCCHHHHHHHHHhhccC----CCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCC
Q 001048 653 VQH---TFAR-ISGYCEQNDIHSPNITVEESIVFSAWLRLS----TQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGV 723 (1174)
Q Consensus 653 ~~~---~~~~-~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 723 (1174)
... ..++ .++|++|++.+++.+|+.+++.+....... ......+..+++.++++.+++. +..++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 432 1222 478999999899999999999875432110 0111223345677889999986 34455432
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHH-hcceeEEecC
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEA-FDDLVLMKNG 802 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~~ 802 (1174)
.+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|+++++. +
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~-~ 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQ-N 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEe-C
Confidence 149999999999999999999999999999999999999999999999877999999999875 34344 67777775 6
Q ss_pred cEEEEEcCCC
Q 001048 803 GRIIYFGPLG 812 (1174)
Q Consensus 803 G~~v~~G~~~ 812 (1174)
|++++.|+++
T Consensus 228 G~i~~~~~~~ 237 (252)
T CHL00131 228 GKIIKTGDAE 237 (252)
T ss_pred CEEEEecChh
Confidence 9999999874
No 274
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=327.59 Aligned_cols=216 Identities=23% Similarity=0.311 Sum_probs=172.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+.. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478999988542 357999999999999999999999999999999999975311 2489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+...+.+.+.++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87632 134567999999988877 7999999986543211 112222345667777777642 22232
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++||+++ .+.+.+|+++++.
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 347999999999999999999999999999999999999999999999976 589999999975 5667789888886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|+++..|++.
T Consensus 222 -~G~i~~~~~~~ 232 (252)
T PRK14255 222 -TGNLIEFADTK 232 (252)
T ss_pred -CCEEEEeCCHH
Confidence 59999998863
No 275
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=331.24 Aligned_cols=216 Identities=22% Similarity=0.266 Sum_probs=172.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC--C-CeEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 589999988542 3469999999999999999999999999999999999764 1 14689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC----CcccccccC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD----GIKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 720 (1174)
+++.. ...++.++|++|++.+++ .|++||+.++..... ..+.....+.+.+.++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 88632 134567999999988776 599999998754321 112222334566777776543 222332
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|+++++.
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 347999999999999999999999999999999999999999999999876 799999999975 5667788888886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 241 -~G~i~~~g~~~ 251 (271)
T PRK14238 241 -NGYVNEYDDTD 251 (271)
T ss_pred -CCEEEEeCCHH
Confidence 59999999863
No 276
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-37 Score=301.27 Aligned_cols=208 Identities=24% Similarity=0.408 Sum_probs=180.4
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCC
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPN 673 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~ 673 (1174)
+++.+|+|+|.++++|.+++++|||||||||||.+++++.+ ..+|+|.++|.++.. ....+.++..-|+......
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~r 89 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSR 89 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhe
Confidence 46789999999999999999999999999999999999877 469999999998754 3456677888898888889
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 674 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
+||+|-+.|+..-. ..+...++.+..+++.++.++|++..|+... +||||||||.-||..++++.+.++||||.
T Consensus 90 lTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryLd-----~LSGGQrQRAfIAMVlaQdTdyvlLDEPL 163 (252)
T COG4604 90 LTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYLD-----ELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163 (252)
T ss_pred eEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhHH-----hcccchhhhhhhheeeeccCcEEEecCcc
Confidence 99999999984322 2233445667789999999999999998874 69999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcc
Q 001048 754 SGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQH 814 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~ 814 (1174)
++||-..+..+++.|++++++ |+||+++.||.+. ...+.|.++.+. +|+++..|++++.
T Consensus 164 NNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK-~G~vv~~G~~~ei 223 (252)
T COG4604 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALK-NGKVVKQGSPDEI 223 (252)
T ss_pred cccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeec-CCEEEecCCHHHh
Confidence 999999999999999999987 9999999999863 344568888886 5999999999763
No 277
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=100.00 E-value=4.7e-35 Score=366.65 Aligned_cols=124 Identities=25% Similarity=0.379 Sum_probs=102.5
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhhcCC---cEEE
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELVANP---SIIF 748 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p---~ill 748 (1174)
++||.|++.|...+. . .....+.++.+||.+. .+..+ ..||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 378999998875432 1 1224567888999753 45443 369999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCCC
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPLG 812 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~ 812 (1174)
|||||+|||+.+...+++.|+++.++|.|||+++|+++ ..+.+|+++.+. ++|++++.|+++
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 99999999999999999999999888999999999874 457789988883 579999999874
No 278
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=4.5e-36 Score=372.37 Aligned_cols=212 Identities=27% Similarity=0.398 Sum_probs=175.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|++|.++ +++++|+|+|++++|||.++|+|+||||||||+|+|+|..+ |.+|+|.+||.++
T Consensus 334 ~I~~~~vsf~y~------------~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--p~~G~I~i~g~~i 399 (588)
T PRK13657 334 AVEFDDVSFSYD------------NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD--PQSGRILIDGTDI 399 (588)
T ss_pred eEEEEEEEEEeC------------CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEh
Confidence 599999999653 12469999999999999999999999999999999999988 5699999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~~ 722 (1174)
.. ..+++.++||+|++.++ +.|++||+.++. + +.+.+ .+.++++.++ +++..|+.+|+.+
T Consensus 400 ~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~~Ni~~~~----~-~~~d~----~i~~al~~~~l~~~i~~lp~gldt~i~~~g 469 (588)
T PRK13657 400 RTVTRASLRRNIAVVFQDAGLF-NRSIEDNIRVGR----P-DATDE----EMRAAAERAQAHDFIERKPDGYDTVVGERG 469 (588)
T ss_pred hhCCHHHHHhheEEEecCcccc-cccHHHHHhcCC----C-CCCHH----HHHHHHHHhCHHHHHHhCcccccchhcCCC
Confidence 54 34677899999998776 569999998752 1 22222 2334444444 3445688888754
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
+.||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|++||++ +..+.+|+++.+. +
T Consensus 470 -~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~--~~~~~~D~ii~l~-~ 544 (588)
T PRK13657 470 -RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRL--STVRNADRILVFD-N 544 (588)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecH--HHHHhCCEEEEEE-C
Confidence 4699999999999999999999999999999999999999999999875 489999999997 4578899999997 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 545 G~i~~~g~~~~ 555 (588)
T PRK13657 545 GRVVESGSFDE 555 (588)
T ss_pred CEEEEeCCHHH
Confidence 99999998643
No 279
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=360.53 Aligned_cols=208 Identities=23% Similarity=0.325 Sum_probs=174.7
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc----cccceEEEEccCCCCCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQNDIHSPN 673 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~Q~~~~~~~ 673 (1174)
++++|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++... ..++.++|++|++.+++.
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 3579999999999999999999999999999999999877 5689999999986421 234568999999888899
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 674 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
+||+||+.++.........+..+..++++++++.+++.+..++.++ +|||||||||+|||||+.+|++|||||||
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lA~al~~~p~lllLDEPt 162 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA-----TLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162 (491)
T ss_pred CCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 9999999876321101011233345678899999999877776653 69999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcc
Q 001048 754 SGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQH 814 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~ 814 (1174)
+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|+++..|++++.
T Consensus 163 ~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~~~ 221 (491)
T PRK10982 163 SSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILR-DGQWIATQPLAGL 221 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEeecChhhC
Confidence 999999999999999999878999999999975 5667788888886 5999999997653
No 280
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.3e-36 Score=370.79 Aligned_cols=188 Identities=26% Similarity=0.409 Sum_probs=157.3
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++||+|.++ +++++|+|+|+++++||.+||+||||||||||+|+|+|..+ |.+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~Y~------------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~~ 398 (529)
T TIGR02868 333 PTLELRDLSFGYP------------GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD--PLQGEVTLDGVS 398 (529)
T ss_pred ceEEEEEEEEecC------------CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 3699999999653 12369999999999999999999999999999999999987 569999999988
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCCC
Q 001048 652 KVQ--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLPG 722 (1174)
Q Consensus 652 ~~~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~ 722 (1174)
+.+ ..+++.++||+|++.++ +.|++|||.++.. +.++ ++++++++..++ ++..||.+|+.|
T Consensus 399 i~~~~~~lr~~i~~V~Q~~~lF-~~TI~eNI~~g~~-----~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~G 468 (529)
T TIGR02868 399 VSSLQDELRRRISVFAQDAHLF-DTTVRDNLRLGRP-----DATD----EELWAALERVGLADWLRSLPDGLDTVLGEGG 468 (529)
T ss_pred hhhHHHHHHhheEEEccCcccc-cccHHHHHhccCC-----CCCH----HHHHHHHHHcCCHHHHHhCcccccchhcccc
Confidence 653 45667899999998876 5699999998621 1222 234455555544 456799999876
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQP 785 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 785 (1174)
. .||||||||++|||||+++|+||+||||||+||+.+++.|.+.|+++. +++|+|+++|++
T Consensus 469 ~-~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 469 A-RLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred C-cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 5 599999999999999999999999999999999999999999999864 489999999974
No 281
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=329.61 Aligned_cols=219 Identities=21% Similarity=0.268 Sum_probs=172.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++++|+|+|+++++||+++|+||||||||||+|+|+|...+. +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 488999987542 346999999999999999999999999999999999975421 3589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
+++.. ...++.++|++|++.+++ .|+.||+.++...+ ... ....++++++++.+++.+..+..... .+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKLKQ-SGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHhcC-Ccc
Confidence 87631 234567999999988777 59999998865332 111 12334566777777774211111111 134
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec---
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN--- 801 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~--- 801 (1174)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++.+
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 6999999999999999999999999999999999999999999999976 589999999975 67788899988862
Q ss_pred -----CcEEEEEcCCC
Q 001048 802 -----GGRIIYFGPLG 812 (1174)
Q Consensus 802 -----~G~~v~~G~~~ 812 (1174)
.|++++.|+++
T Consensus 229 ~~~~~~g~i~~~~~~~ 244 (264)
T PRK14243 229 EGGGRYGYLVEFDRTE 244 (264)
T ss_pred cccccCceEEEeCCHH
Confidence 58999999864
No 282
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=359.96 Aligned_cols=217 Identities=28% Similarity=0.359 Sum_probs=180.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~-------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTF-------------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEE-------------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 47888998754 23469999999999999999999999999999999999876 5689999999886
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQH----TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~~----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
... ..++.++|++|++.+++.+||+||+.++............+..++++++++.+++.+..++.+ .+|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCH
Confidence 421 235679999999988899999999998632111111223344567889999999987666654 36999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~-~G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFK-DGRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEee
Confidence 9999999999999999999999999999999999999999999878999999999975 5667789888887 5899887
Q ss_pred cCC
Q 001048 809 GPL 811 (1174)
Q Consensus 809 G~~ 811 (1174)
++.
T Consensus 222 ~~~ 224 (501)
T PRK11288 222 FDD 224 (501)
T ss_pred cCc
Confidence 764
No 283
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-35 Score=324.52 Aligned_cols=221 Identities=20% Similarity=0.287 Sum_probs=176.4
Q ss_pred ccEEEEeceEEEEeeCCc----ccc--ccc-ccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEE
Q 001048 571 PLTVTFEDLRYYVDIPSA----MRK--NGF-NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEG 643 (1174)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~----~~~--~~~-~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G 643 (1174)
+++++++||+.+++.... .++ .++ ...++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G 79 (264)
T PRK13546 2 NVSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVG 79 (264)
T ss_pred CceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCce
Confidence 356888888866554211 111 011 1234679999999999999999999999999999999999887 5689
Q ss_pred EEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCC
Q 001048 644 DIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 644 ~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
+|.++|. +++++|+..+.+.+|+.||+.+..... ....++..+.++++++.+++.+..+..+
T Consensus 80 ~I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (264)
T PRK13546 80 KVDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV----- 141 (264)
T ss_pred EEEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----
Confidence 9999985 246677776777899999998764332 2233444556677888888887666654
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ .+.+.+|+++++. +|
T Consensus 142 ~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~-~G 219 (264)
T PRK13546 142 KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIE-GG 219 (264)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEE-CC
Confidence 369999999999999999999999999999999999999999999999877999999999874 5667788888886 59
Q ss_pred EEEEEcCCCc
Q 001048 804 RIIYFGPLGQ 813 (1174)
Q Consensus 804 ~~v~~G~~~~ 813 (1174)
++++.|+.++
T Consensus 220 ~i~~~g~~~~ 229 (264)
T PRK13546 220 KLKDYGELDD 229 (264)
T ss_pred EEEEeCCHHH
Confidence 9999998654
No 284
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-36 Score=330.67 Aligned_cols=197 Identities=28% Similarity=0.369 Sum_probs=157.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
+.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++.+++ .|
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (234)
T cd03251 15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DT 91 (234)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-cc
Confidence 369999999999999999999999999999999999987 568999999987542 234567899999987775 69
Q ss_pred HHHHHHHHHhhccCCCCCHHHHH-----HHHHHHHHHc--CCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKA-----EFVNEVLQTI--ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ill 748 (1174)
|+||+.+.... ....... ..+++.++.+ ++.+..+.. +..||||||||++|||||+.+|++++
T Consensus 92 v~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lll 161 (234)
T cd03251 92 VAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSGGQRQRIAIARALLKDPPILI 161 (234)
T ss_pred HHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999875321 1111111 1234445544 444433333 34799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+ ..+|+++++. +|++++.|+.+
T Consensus 162 LDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~v~~l~-~G~i~~~~~~~ 221 (234)
T cd03251 162 LDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TI-ENADRIVVLE-DGKIVERGTHE 221 (234)
T ss_pred EeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HH-hhCCEEEEec-CCeEeeeCCHH
Confidence 9999999999999999999999864 899999999985 44 4588888886 58999988753
No 285
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.7e-35 Score=327.97 Aligned_cols=216 Identities=24% Similarity=0.304 Sum_probs=172.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee-
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP- 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 651 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccc
Confidence 378888887542 3468999999999999999999999999999999999877 568999999976
Q ss_pred ----CCccc-------ccceEEEEccCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-ccccc
Q 001048 652 ----KVQHT-------FARISGYCEQNDI--HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSL 717 (1174)
Q Consensus 652 ----~~~~~-------~~~~~~~v~Q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 717 (1174)
+.... .++.++|++|++. +.+..|+.||+.+..... . ........+.++++++.+++.+ ..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 42211 2346899999874 446679999997643211 1 1111233467788999999963 55554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcce
Q 001048 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 718 ~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
+ +.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++||+++ .+.+.+|++
T Consensus 146 ~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 P-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred c-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 3 469999999999999999999999999999999999999999999998764 899999999975 566678888
Q ss_pred eEEecCcEEEEEcCCC
Q 001048 797 VLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 797 ~~l~~~G~~v~~G~~~ 812 (1174)
+++. +|++++.|+++
T Consensus 220 ~~l~-~G~i~~~~~~~ 234 (253)
T TIGR02323 220 LVMQ-QGRVVESGLTD 234 (253)
T ss_pred EEEE-CCEEEEECCHH
Confidence 8886 59999998863
No 286
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.3e-35 Score=326.85 Aligned_cols=199 Identities=25% Similarity=0.372 Sum_probs=168.6
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccceEEEEccCCCCCCCCCHH
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
+|+|+||++++||+++|+||||||||||+++|+|..+ + +|+|.++|+++... ..++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999874 3 79999999986432 2345689999998888889999
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhc-------CCcEEEEe
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMD 750 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~-------~p~illlD 750 (1174)
||+.+.... .....+..++++++++.+++.+..++.+ +.||||||||++|||||+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999876321 1122334567889999999987666654 3699999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 751 EPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 751 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|++++.|+.++
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~~ 219 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLK-QGKLLASGRRDE 219 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEECCHHH
Confidence 999999999999999999999877999999999975 5778889888886 589999998643
No 287
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=7.3e-36 Score=323.99 Aligned_cols=209 Identities=24% Similarity=0.415 Sum_probs=166.2
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. ..++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-----------~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcC-----------CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhH
Confidence 67788887431 112469999999999999999999999999999999999876 46899999998763
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCccccccc------CCCCC
Q 001048 654 Q---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVG------LPGVN 724 (1174)
Q Consensus 654 ~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~------~~~~~ 724 (1174)
. ...++.++|++|++.+++ .|+.||+.+... ... .+.++++++.+++.+..+.... .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 123457899999988776 699999976421 111 2235567777787665554321 01234
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ ..+.+|+++++. +|+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~--~~~~~d~v~~l~-~g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS--LLDLVDRIIVMD-SGR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH--HHHhCCEEEEEe-CCe
Confidence 79999999999999999999999999999999999999999999998764 89999999975 347888888886 589
Q ss_pred EEEEc
Q 001048 805 IIYFG 809 (1174)
Q Consensus 805 ~v~~G 809 (1174)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 88754
No 288
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-35 Score=332.34 Aligned_cols=223 Identities=25% Similarity=0.353 Sum_probs=175.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC---CeEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g 649 (1174)
.+.++|+++.+. ++.+|+++||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588999988542 34799999999999999999999999999999999998642 24689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC---------CCC-HHHHHHHHHHHHHHcCCCCcc
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLST---------QID-SKTKAEFVNEVLQTIELDGIK 714 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~---------~~~-~~~~~~~~~~~l~~l~l~~~~ 714 (1174)
.++.. ...++.++|++|++.+++ .||+||+.++....... ... .....+.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87642 123567999999988776 59999999875321100 011 122345678888888875322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhc
Q 001048 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD 794 (1174)
Q Consensus 715 ~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d 794 (1174)
+..... .++.|||||||||+|||||+++|+||||||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|
T Consensus 191 ~~~~~~-~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLDD-NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhcC-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 222221 2357999999999999999999999999999999999999999999999976 589999999975 5667788
Q ss_pred ceeEEecCcEEEEEcCCC
Q 001048 795 DLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 795 ~~~~l~~~G~~v~~G~~~ 812 (1174)
+++++.++|++++.|+++
T Consensus 268 ~i~~~l~~G~i~~~g~~~ 285 (305)
T PRK14264 268 QTAVFLTGGELVEYDDTD 285 (305)
T ss_pred EEEEEecCCEEEEeCCHH
Confidence 876554579999999864
No 289
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-35 Score=308.90 Aligned_cols=158 Identities=30% Similarity=0.483 Sum_probs=141.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++... ...++.++|++|++.+++..|+
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTV 90 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcH
Confidence 469999999999999999999999999999999999876 468999999987643 2345679999999988888999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
+||+. ||||||||++|||||+.+|++++|||||+||
T Consensus 91 ~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L 126 (173)
T cd03230 91 RENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL 126 (173)
T ss_pred HHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 99873 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 757 DARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|+.++..+.+.|++++++|.|+|++||+++ .+.+.+|+++++.+ |+
T Consensus 127 D~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~-g~ 172 (173)
T cd03230 127 DPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNN-GR 172 (173)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeC-CC
Confidence 999999999999999877899999999975 56667898888864 65
No 290
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-35 Score=317.74 Aligned_cols=196 Identities=26% Similarity=0.336 Sum_probs=162.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVR-------------GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEE-------------CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 6788888754 23469999999999999999999999999999999999877 56899999998753
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH
Q 001048 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733 (1174)
Q Consensus 654 ~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 733 (1174)
....++.++|++|++.+++.+|++||+.+..... ... .+.++++++.+++.+..+... +.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL---GGE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 2225567899999888888999999998765332 111 234778999999987666554 3699999999
Q ss_pred HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 734 v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++ .. |+++-+
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~-~~-~~~~~~ 198 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GL-PG-ARELDL 198 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hh-cc-CcEEee
Confidence 99999999999999999999999999999999999998877999999999975 33 33 666555
No 291
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.9e-36 Score=369.59 Aligned_cols=213 Identities=24% Similarity=0.366 Sum_probs=175.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.++ .+++.+|+|+|+++++||.++|+||||||||||+++|+|..+ |.+|+|.+||+++
T Consensus 313 ~I~~~~v~~~y~-----------~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~--p~~G~i~~~g~~~ 379 (569)
T PRK10789 313 ELDVNIRQFTYP-----------QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD--VSEGDIRFHDIPL 379 (569)
T ss_pred cEEEEEEEEECC-----------CCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEH
Confidence 588999998653 223579999999999999999999999999999999999887 5689999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~~ 722 (1174)
.. ..+++.++|++|++.+++ .|++||+.++.. ..+.+ .++++++..+ +++..|+.+|+.+
T Consensus 380 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~-----~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g 449 (569)
T PRK10789 380 TKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGRP-----DATQQ----EIEHVARLASVHDDILRLPQGYDTEVGERG 449 (569)
T ss_pred hhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCCC-----CCCHH----HHHHHHHHcCCHHHHHhCcCcccceecCCC
Confidence 43 345678999999988765 699999987521 12222 2334444443 3455688888765
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +|+|+|++||+++ ..+.+|+++++. +
T Consensus 450 -~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~-~ 524 (569)
T PRK10789 450 -VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQ-H 524 (569)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEe-C
Confidence 4699999999999999999999999999999999999999999999975 5899999999974 467799999886 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 525 G~i~~~g~~~~ 535 (569)
T PRK10789 525 GHIAQRGNHDQ 535 (569)
T ss_pred CEEEEecCHHH
Confidence 99999999743
No 292
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.9e-34 Score=353.97 Aligned_cols=200 Identities=30% Similarity=0.445 Sum_probs=165.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++||+|.++ ..++++|+|+|++++|||.++|+||||||||||+|+|+|..+ |.+|+|.+||.++
T Consensus 320 ~i~~~~v~f~y~-----------~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~I~~~g~~i 386 (529)
T TIGR02857 320 SLEFSGLSVAYP-----------GRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PTEGSIAVNGVPL 386 (529)
T ss_pred eEEEEEEEEECC-----------CCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeh
Confidence 599999999653 123479999999999999999999999999999999999987 5689999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------CcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-------GIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~ 722 (1174)
.+ ..+++.++||+|++.+++ .|++||+.++.. ..++ +.++++++..++. +..||.+|+.+
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~~-----~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g 456 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLFA-GTIAENIRLARP-----DASD----AEIRRALERAGLDEFVAALPQGLDTLIGEGG 456 (529)
T ss_pred hhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccCC-----CCCH----HHHHHHHHHcCcHHHHHhCcccccchhcccc
Confidence 54 346778999999988764 699999987531 1122 2344555555543 44688888765
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
. .||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|+++++
T Consensus 457 ~-~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 457 A-GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred c-cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 4 699999999999999999999999999999999999999999999875 5899999999874 46788988764
No 293
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=291.31 Aligned_cols=198 Identities=22% Similarity=0.360 Sum_probs=168.3
Q ss_pred ccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCC
Q 001048 593 GFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDI 669 (1174)
Q Consensus 593 ~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~ 669 (1174)
+|...+.++|+++||.+++||..+|.||||||||||+|+++.+.+ |++|.+++.|++++. ..+|..++||.|.+.
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis--p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~pa 87 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPA 87 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC--CCCceEEEcCccccccChHHHHHHHHHHHcCcc
Confidence 344556789999999999999999999999999999999999887 679999999998754 457888999999999
Q ss_pred CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 001048 670 HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 670 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ill 748 (1174)
+|+ .||++|+.|...++.... ..+...+.++.+++.+. .++.+ ..||||||||++|+|.|..-|+||+
T Consensus 88 Lfg-~tVeDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L~k~i-----t~lSGGE~QriAliR~Lq~~P~ILL 156 (223)
T COG4619 88 LFG-DTVEDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSILTKNI-----TELSGGEKQRIALIRNLQFMPKILL 156 (223)
T ss_pred ccc-cchhhccccchHHhccCC-----ChHHHHHHHHHcCCchhhhcchh-----hhccchHHHHHHHHHHhhcCCceEE
Confidence 986 499999999877663221 23446678888888753 33333 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||+||+.+++.|-+.|.++. ++.+.++.+||+++ +..+.+|+++-+.. |++
T Consensus 157 LDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~-G~~ 212 (223)
T COG4619 157 LDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQP-GHA 212 (223)
T ss_pred ecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEecc-Ccc
Confidence 999999999999999999999986 56899999999986 56788999999975 654
No 294
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-35 Score=324.91 Aligned_cols=220 Identities=24% Similarity=0.312 Sum_probs=173.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..... +.+|+|.+||
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 477888887541 356999999999999999999999999999999999975311 3689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCC
Q 001048 650 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVN 724 (1174)
Q Consensus 650 ~~~~~-----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 724 (1174)
+++.. ...++.++|++|++.+++. |+.||+.++..... ..+.+..++++.+.++.+++.+..+..... ...
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDK-SAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhC-Ccc
Confidence 88642 1235679999999888774 99999988643221 112233456678888888875321111111 234
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++. +|+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~-~G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFL-NGE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEE-CCe
Confidence 6999999999999999999999999999999999999999999999864 899999999975 5666667777775 599
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 223 i~~~g~~~ 230 (250)
T PRK14266 223 IIESGLTD 230 (250)
T ss_pred EEEeCCHH
Confidence 99999864
No 295
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-35 Score=324.35 Aligned_cols=215 Identities=24% Similarity=0.348 Sum_probs=172.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEE------EE
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGD------IR 646 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~------i~ 646 (1174)
.+.++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+ +.
T Consensus 10 ~i~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~--~~~G~v~~~G~~~ 74 (257)
T PRK14246 10 VFNISRLYLYI-------------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE--IYDSKIKVDGKVL 74 (257)
T ss_pred heeeeeEEEec-------------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCcCceeEcCEEE
Confidence 37888888753 24579999999999999999999999999999999999876 34554 44
Q ss_pred ECCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC----ccccccc
Q 001048 647 IGGYPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVG 719 (1174)
Q Consensus 647 ~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 719 (1174)
++|.+... ...++.++|++|++.+++.+|++||+.++..... .....+..++++++++.+++.+ ..+..
T Consensus 75 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-- 150 (257)
T PRK14246 75 YFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP-- 150 (257)
T ss_pred ECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC--
Confidence 54554321 2345678999999998889999999998753321 1123344566888999999863 22332
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 720 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 720 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
+..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+|+++++
T Consensus 151 ---~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l 225 (257)
T PRK14246 151 ---ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFL 225 (257)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEE
Confidence 346999999999999999999999999999999999999999999999865 699999999975 556788988888
Q ss_pred ecCcEEEEEcCCC
Q 001048 800 KNGGRIIYFGPLG 812 (1174)
Q Consensus 800 ~~~G~~v~~G~~~ 812 (1174)
. +|++++.|+.+
T Consensus 226 ~-~g~i~~~g~~~ 237 (257)
T PRK14246 226 Y-NGELVEWGSSN 237 (257)
T ss_pred E-CCEEEEECCHH
Confidence 6 58999999864
No 296
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=4.5e-35 Score=323.91 Aligned_cols=220 Identities=22% Similarity=0.308 Sum_probs=169.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. ++++|+|+|++|++||+++|+||||||||||+++|+|..+..+.+|+|.++|+++.
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56788887542 34699999999999999999999999999999999998421156899999998764
Q ss_pred cc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHh-hcc--C-CCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCC
Q 001048 654 QH---T-FARISGYCEQNDIHSPNITVEESIVFSAW-LRL--S-TQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVN 724 (1174)
Q Consensus 654 ~~---~-~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~-~~~--~-~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 724 (1174)
.. . .++.++|++|++.+++.+|+.+++.+... +.. . .........+++++.++.+++. +..++.+. +
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----V 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----C
Confidence 31 1 22468999999888888888777654321 110 0 0011223345677888988885 34444331 2
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHH-hcceeEEecCc
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEA-FDDLVLMKNGG 803 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~~G 803 (1174)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|+++++. +|
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~-~g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLY-QG 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEE-CC
Confidence 59999999999999999999999999999999999999999999999877899999999875 34343 67777775 69
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++++.|+.+
T Consensus 223 ~i~~~g~~~ 231 (248)
T PRK09580 223 RIVKSGDFT 231 (248)
T ss_pred eEEEeCCHH
Confidence 999999864
No 297
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.9e-35 Score=313.43 Aligned_cols=175 Identities=25% Similarity=0.340 Sum_probs=151.1
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc--cccceEEEEccCCCCCCCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH--TFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~Q~~~~~~~lT 675 (1174)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++... .+++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHHhhhheEEeccCcccccCCc
Confidence 3579999999999999999999999999999999999877 5689999999875432 23467899999988888899
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
+.||+.+...... . + .+.++++++.+++.+..++.++ .||||||||++|||+++.+|++++|||||+|
T Consensus 90 v~~~l~~~~~~~~----~--~-~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~ 157 (198)
T TIGR01189 90 ALENLHFWAAIHG----G--A-QRTIEDALAAVGLTGFEDLPAA-----QLSAGQQRRLALARLWLSRAPLWILDEPTTA 157 (198)
T ss_pred HHHHHHHHHHHcC----C--c-HHHHHHHHHHcCCHHHhcCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999988654321 1 1 2356788999999877776653 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 756 LDARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
||+.++..+.+.|++++++|+|+|++||++.
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 158 LDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 9999999999999999877999999999874
No 298
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.1e-35 Score=329.43 Aligned_cols=212 Identities=18% Similarity=0.277 Sum_probs=171.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. .++..+|+|+||+|++||+++|+||||||||||+++|+|..+ .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~-----------~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYT-----------EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeC-----------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 478999998653 123469999999999999999999999999999999999875 369999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCccc-------ccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD-------SLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-------~~~~~~~ 722 (1174)
.. ...++.++|++|++.+++ .|++||+.... ... .+.+.+.++.+||.+..+ +.+++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~- 135 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDG- 135 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCC-
Confidence 43 235677999999998876 59999996321 111 134566777788865433 334332
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
...||||||||++|||||+.+|+||+|||||++||+.+...+.+.|+++. +++|||+++|+++ . ...+|++++|. +
T Consensus 136 g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~-i~~~dri~vl~-~ 211 (275)
T cd03289 136 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-A-MLECQRFLVIE-E 211 (275)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-H-HHhCCEEEEec-C
Confidence 34699999999999999999999999999999999999999999999875 4899999999974 3 45688888886 5
Q ss_pred cEEEEEcCCCcc
Q 001048 803 GRIIYFGPLGQH 814 (1174)
Q Consensus 803 G~~v~~G~~~~~ 814 (1174)
|++++.|++++.
T Consensus 212 G~i~~~g~~~~l 223 (275)
T cd03289 212 NKVRQYDSIQKL 223 (275)
T ss_pred CeEeecCCHHHH
Confidence 999999998653
No 299
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.4e-35 Score=366.03 Aligned_cols=212 Identities=27% Similarity=0.350 Sum_probs=173.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.++ +++++|+|+|+++++||.++|+||||||||||+++|+|..+ |.+|+|.+||.++
T Consensus 334 ~i~~~~v~~~y~------------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~ 399 (585)
T TIGR01192 334 AVEFRHITFEFA------------NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD--PTVGQILIDGIDI 399 (585)
T ss_pred eEEEEEEEEECC------------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC--CCCCEEEECCEEh
Confidence 599999998642 12468999999999999999999999999999999999887 5699999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHc-------CCCCcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI-------ELDGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~~~~~~ 722 (1174)
.. ..+++.++||+|++.++ +.|++||+.++.. ..+.++ +.+.++.. .+.+..|+.+|+.+
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf-~~ti~~Ni~~~~~-----~~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~~~ 469 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLF-NRSIRENIRLGRE-----GATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGERG 469 (585)
T ss_pred hhCCHHHHHhheEEEccCCccC-cccHHHHHhcCCC-----CCCHHH----HHHHHHHhCcHHHHHhccccccchhcCCC
Confidence 53 34667899999998776 4799999987521 122222 22222222 23445677787765
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|+++++. +
T Consensus 470 -~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~--~~~~~d~i~~l~-~ 544 (585)
T TIGR01192 470 -NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS--TVRNADLVLFLD-Q 544 (585)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH--HHHcCCEEEEEE-C
Confidence 4699999999999999999999999999999999999999999999875 4899999999974 457799999997 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|+.++
T Consensus 545 G~i~~~g~~~~ 555 (585)
T TIGR01192 545 GRLIEKGSFQE 555 (585)
T ss_pred CEEEEECCHHH
Confidence 89999999754
No 300
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.7e-35 Score=314.00 Aligned_cols=194 Identities=22% Similarity=0.306 Sum_probs=161.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
+.++|+++.+ +++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~-------------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDY-------------HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEe-------------CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccc
Confidence 5678888754 23579999999999999999999999999999999999887 56899999998764
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 654 Q--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 654 ~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
. ..+++.++|++|+..+++.+||+||+.+.... . . ....++++++.+++.+..++.++ .||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~----~--~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--S----P--GAVGITELCRLFSLEHLIDYPCG-----LLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc--C----c--chHHHHHHHHHcCCchhhhCChh-----hcCHHHH
Confidence 2 23456799999998888899999999886421 1 1 12357889999999776666543 6999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhccee
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLV 797 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~ 797 (1174)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||++. ..+.+|..+
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999999999999999999999999999998777999999999864 445565443
No 301
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=9.8e-36 Score=326.93 Aligned_cols=196 Identities=26% Similarity=0.387 Sum_probs=153.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 469999999999999999999999999999999999877 568999999987642 123456999999987765 69
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHH-----HHHHHHHHc--CCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAE-----FVNEVLQTI--ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l--~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ill 748 (1174)
|+||+.+....+ ...+..+ .+.+.++.+ ++....+.. ++.|||||||||+|||+|+.+|++|+
T Consensus 93 v~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lll 162 (238)
T cd03249 93 IAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGER-----GSQLSGGQKQRIAIARALLRNPKILL 162 (238)
T ss_pred HHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeeccC-----CccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998753211 1111111 112222222 222222222 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++ +.+|+++++. +|++++.|+.
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~-~G~i~~~~~~ 221 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQ-NGQVVEQGTH 221 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999987 7999999999975 34 5788888886 5899999875
No 302
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-35 Score=323.26 Aligned_cols=210 Identities=27% Similarity=0.403 Sum_probs=163.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. .++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeH
Confidence 477888887541 12469999999999999999999999999999999999887 4689999999876
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccc-------cccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS-------LVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~~ 722 (1174)
.. ...++.++|++|++.+++. |++||+.+.... ... +.+++.++.+++.+..+. ..+. .
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~ 136 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGE-N 136 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHhhc-C
Confidence 42 2345678999999877665 999999875211 111 122333333333322211 1111 2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
...|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||+++ .+ +.+|+++++. +
T Consensus 137 ~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~-~ 212 (229)
T cd03254 137 GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLD-D 212 (229)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEe-C
Confidence 35799999999999999999999999999999999999999999999986 4899999999975 34 5688888886 5
Q ss_pred cEEEEEcCC
Q 001048 803 GRIIYFGPL 811 (1174)
Q Consensus 803 G~~v~~G~~ 811 (1174)
|++++.|+.
T Consensus 213 g~~~~~~~~ 221 (229)
T cd03254 213 GKIIEEGTH 221 (229)
T ss_pred CeEEEeCCH
Confidence 899998875
No 303
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.7e-34 Score=378.55 Aligned_cols=213 Identities=23% Similarity=0.369 Sum_probs=169.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE-CCee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI-GGYP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~-~g~~ 651 (1174)
.++++||++.++. .+++++|+|+||+|++||++||+||||||||||+++|+|.++ |.+|+|.+ +|.+
T Consensus 382 ~I~~~nVsf~Y~~----------~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDT----------RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD--PTEGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCC----------CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc--CCCCeEEEeCCcc
Confidence 5999999997631 112479999999999999999999999999999999999987 56999999 4676
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhcc---------CC------C----------------------
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRL---------ST------Q---------------------- 691 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~---------~~------~---------------------- 691 (1174)
+.. ..+++.+|||+|++.+++ .||+|||.++..... .. .
T Consensus 450 i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 450 LKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred hhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 543 335678999999998876 599999998731000 00 0
Q ss_pred --C---------CHHHHHHHHHHHHHHcCC-------CCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 692 --I---------DSKTKAEFVNEVLQTIEL-------DGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 692 --~---------~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
. ......+.+.++++.+++ .+..||.+|..+ ..||||||||++|||||+++|+||||||||
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g-~~LSGGQkQRiaIARAll~~P~ILlLDEpT 607 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNA-SKLSGGQKQRISIARAIIRNPKILILDEAT 607 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 0 000112345666666654 445688888765 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 754 SGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|+||+.++..+.+.|+++++ +|+|+|+++|+++ ..+.+|++++|.+
T Consensus 608 SaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls--~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 608 SSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS--TIRYANTIFVLSN 654 (1466)
T ss_pred cccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH--HHHhCCEEEEEeC
Confidence 99999999999999999975 5899999999975 3578999999976
No 304
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-36 Score=310.91 Aligned_cols=192 Identities=24% Similarity=0.426 Sum_probs=167.7
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------HTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+++|..+.-.++||-|+||||||||+|+|+|+.. |.+|.|.+||....+ ...+|.+|||+||-.+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 5677777657999999999999999999999988 569999999975422 2346789999999999999999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
+.||.|+.... .....+++.+.+|+.|..++.- ..|||||||||+|+|||+++|++|++|||.+.|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P-----~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYP-----GTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCC-----CccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999986321 2344678899999999998864 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 757 DARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|-..+.+++-.|++++++ +..|+.+||.++ |+...+|++++|. +|++...|+.++
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le-~GkV~A~g~~e~ 215 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLE-NGKVKASGPLEE 215 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEec-CCeEEecCcHHH
Confidence 999999999999999876 889999999875 8889999999987 599999999754
No 305
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=322.86 Aligned_cols=216 Identities=25% Similarity=0.300 Sum_probs=173.6
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEEC
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIG 648 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~ 648 (1174)
..++++|+++.+. ++++|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++
T Consensus 15 ~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~ 81 (265)
T PRK14252 15 QKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 (265)
T ss_pred ceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEc
Confidence 4588999998542 347999999999999999999999999999999999986532 268999999
Q ss_pred CeeCC---c----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHHHcCCCC----cccc
Q 001048 649 GYPKV---Q----HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQID-SKTKAEFVNEVLQTIELDG----IKDS 716 (1174)
Q Consensus 649 g~~~~---~----~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~----~~~~ 716 (1174)
|.+.. . ...++.++|++|++.+++. |++||+.++.... ... ....++.++++++.+++.+ ..+.
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 157 (265)
T PRK14252 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLGD 157 (265)
T ss_pred CccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHhC
Confidence 97642 1 1345678999999888875 9999998865322 111 1222455777788777642 2233
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcce
Q 001048 717 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 717 ~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
. ...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+|++
T Consensus 158 ~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i 230 (265)
T PRK14252 158 L-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYT 230 (265)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEE
Confidence 3 246999999999999999999999999999999999999999999999975 699999999975 566788988
Q ss_pred eEEecCcEEEEEcCCC
Q 001048 797 VLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 797 ~~l~~~G~~v~~G~~~ 812 (1174)
+++. +|++++.|+.+
T Consensus 231 ~~l~-~G~i~~~g~~~ 245 (265)
T PRK14252 231 AYMY-MGELIEFGATD 245 (265)
T ss_pred EEEE-CCEEEEeCCHH
Confidence 8886 59999999863
No 306
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.1e-35 Score=357.36 Aligned_cols=215 Identities=23% Similarity=0.284 Sum_probs=174.9
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEEC------
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIG------ 648 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~------ 648 (1174)
+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|..+..+.+|+|.++
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~ 68 (520)
T TIGR03269 2 EVKNLTKKF-------------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEK 68 (520)
T ss_pred EEEEEEEEE-------------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccc
Confidence 567777653 2357999999999999999999999999999999999985211568999997
Q ss_pred -----------------CeeCC-------c------ccccceEEEEccC-CCCCCCCCHHHHHHHHHhhccCCCCCHHHH
Q 001048 649 -----------------GYPKV-------Q------HTFARISGYCEQN-DIHSPNITVEESIVFSAWLRLSTQIDSKTK 697 (1174)
Q Consensus 649 -----------------g~~~~-------~------~~~~~~~~~v~Q~-~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~ 697 (1174)
|.++. . ...++.++|++|+ +.+++.+||+||+.++.... .....+.
T Consensus 69 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~ 145 (520)
T TIGR03269 69 CGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEA 145 (520)
T ss_pred ccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHH
Confidence 22110 0 1134568999997 67788899999999875432 2233445
Q ss_pred HHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCC
Q 001048 698 AEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGR 776 (1174)
Q Consensus 698 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 776 (1174)
.++++++++.+++.+..++.+ ++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+
T Consensus 146 ~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 146 VGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred HHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 567889999999987777665 36999999999999999999999999999999999999999999999975 489
Q ss_pred EEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 777 TVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 777 tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
|||++||+++ .+.+.+|++++|. +|++++.|+++
T Consensus 221 tviivtHd~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 254 (520)
T TIGR03269 221 SMVLTSHWPE-VIEDLSDKAIWLE-NGEIKEEGTPD 254 (520)
T ss_pred EEEEEeCCHH-HHHHhcCEEEEEe-CCEEeeecCHH
Confidence 9999999975 4667789998886 58999988864
No 307
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=6.9e-35 Score=317.15 Aligned_cols=209 Identities=23% Similarity=0.281 Sum_probs=164.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEEC--Ce-
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIG--GY- 650 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~--g~- 650 (1174)
++++|+++.+..... ...++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCc
Confidence 567888876531100 0012479999999999999999999999999999999999877 468999998 42
Q ss_pred -eCCc---cc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCC
Q 001048 651 -PKVQ---HT----FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLP 721 (1174)
Q Consensus 651 -~~~~---~~----~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~ 721 (1174)
++.. .. .++.++|++|++.+++.+||+||+.+..... ........+++.++++.+++.+. .+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 147 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPP--- 147 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCc---
Confidence 3321 11 1346899999998999999999998864322 12333345667889999999753 34443
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++ .+.+.+|+++.+
T Consensus 148 --~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~ 222 (224)
T TIGR02324 148 --ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDV 222 (224)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEec
Confidence 469999999999999999999999999999999999999999999999877999999999853 344678887765
No 308
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-35 Score=307.14 Aligned_cols=160 Identities=31% Similarity=0.468 Sum_probs=142.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-----ccccceEEEEccCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-----HTFARISGYCEQNDIHSPN 673 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~Q~~~~~~~ 673 (1174)
+++++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++.+++.
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 469999999999999999999999999999999999877 568999999987643 2345679999999988888
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 674 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
+|++||+.+. ||||||||++|||||+.+|++++|||||
T Consensus 91 ~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 91 LTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred CCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 9999987542 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 754 SGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
+|||+.++..+.+.|++++++ |+|+|++||+++ .+.+.+|+++++.+ |+
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~ 178 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRD-GK 178 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CC
Confidence 999999999999999999887 899999999975 55567898888864 53
No 309
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-35 Score=362.28 Aligned_cols=221 Identities=21% Similarity=0.254 Sum_probs=180.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+... .+++++|+||||++++||++||+||||||||||+|+|+|..+ +.+|+|.++|..+
T Consensus 12 ~l~v~~l~~~y~~~---------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~ 80 (623)
T PRK10261 12 VLAVENLNIAFMQE---------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLL 80 (623)
T ss_pred eEEEeceEEEecCC---------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEe
Confidence 48899999865311 113479999999999999999999999999999999999986 4589999988643
Q ss_pred C-------------cc---cc-cceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-
Q 001048 653 V-------------QH---TF-ARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG- 712 (1174)
Q Consensus 653 ~-------------~~---~~-~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~- 712 (1174)
. .. .. ++.+|||+|++ .+++.+||.||+.++..... ..+..+..+++.++++.+||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh
Confidence 1 00 11 24689999997 67788999999999865321 2344455678889999999964
Q ss_pred --cccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHH
Q 001048 713 --IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDI 789 (1174)
Q Consensus 713 --~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~ 789 (1174)
..+..+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++||+++ .+
T Consensus 159 ~~~~~~~~-----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~ 232 (623)
T PRK10261 159 QTILSRYP-----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VV 232 (623)
T ss_pred hhHHhCCC-----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HH
Confidence 234443 469999999999999999999999999999999999999999999999865 999999999975 56
Q ss_pred HHHhcceeEEecCcEEEEEcCCCc
Q 001048 790 FEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 790 ~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
.+.+|++++|. +|++++.|++++
T Consensus 233 ~~~adri~vl~-~G~i~~~g~~~~ 255 (623)
T PRK10261 233 AEIADRVLVMY-QGEAVETGSVEQ 255 (623)
T ss_pred HHhCCEEEEee-CCeecccCCHHH
Confidence 67889888886 599999998753
No 310
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-35 Score=337.75 Aligned_cols=209 Identities=19% Similarity=0.284 Sum_probs=169.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.... ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ |.+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~----------~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~ 88 (549)
T PRK13545 21 FDKLKDLFFRSKD----------GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA 88 (549)
T ss_pred eeEEEEEEEecCC----------CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee
Confidence 4667777664321 112469999999999999999999999999999999999887 5689999999752
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
++.+...+.+.+|++||+.+..... ..+..+..++++++++.+++.+..++.+ +.|||||||
T Consensus 89 ----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQ 150 (549)
T PRK13545 89 ----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKS 150 (549)
T ss_pred ----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHH
Confidence 1222344567789999998754322 2233444556788999999987777665 369999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|++++.|+++
T Consensus 151 RVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~-~GkIv~~G~~~ 228 (549)
T PRK13545 151 RLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLH-YGQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 999999999999999999999999999999999999999877999999999975 5667789888886 59999999875
Q ss_pred c
Q 001048 813 Q 813 (1174)
Q Consensus 813 ~ 813 (1174)
+
T Consensus 229 e 229 (549)
T PRK13545 229 E 229 (549)
T ss_pred H
Confidence 4
No 311
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-35 Score=324.11 Aligned_cols=197 Identities=27% Similarity=0.404 Sum_probs=154.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ..+++.++|++|++.+++ .|
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 90 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DT 90 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-ch
Confidence 469999999999999999999999999999999999877 568999999987643 234567899999987775 79
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-------cccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-------IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ill 748 (1174)
++||+.++.. ...... +.+.++..++.+ ..++....+ .+.||||||||++|||+|+.+|++|+
T Consensus 91 v~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~~~-~~~LS~G~~~rl~la~aL~~~p~lll 160 (236)
T cd03253 91 IGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVGER-GLKLSGGEKQRVAIARAILKNPPILL 160 (236)
T ss_pred HHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchhhcC-CCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999987531 111111 122222222221 112222221 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
|||||+|||+.++..+.+.|+++++ |+|||++||+++ .+ ..+|+++++. +|++++.|+.+
T Consensus 161 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~-~g~i~~~~~~~ 220 (236)
T cd03253 161 LDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLK-DGRIVERGTHE 220 (236)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEE-CCEEEeeCCHH
Confidence 9999999999999999999999877 999999999975 34 5588888886 58999988753
No 312
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=6.9e-35 Score=320.75 Aligned_cols=199 Identities=24% Similarity=0.375 Sum_probs=165.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc--
Confidence 378889987542 3469999999999999999999999999999999999877 56899999872
Q ss_pred CcccccceEEEEccCCCCCCC--CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPN--ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~--lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
..++|++|++.+++. .|+++++.+. .... .+++.++++.+++.+..++.+ ..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHH
Confidence 358999999877665 4788876531 1111 234678899999987777654 3699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++ ++ ++++.|
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l-~~-~i~~~g 202 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCL-NH-HICCSG 202 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE-CC-ceEeeC
Confidence 99999999999999999999999999999999999999999765 899999999975 566778888888 44 788999
Q ss_pred CCC
Q 001048 810 PLG 812 (1174)
Q Consensus 810 ~~~ 812 (1174)
+++
T Consensus 203 ~~~ 205 (251)
T PRK09544 203 TPE 205 (251)
T ss_pred CHH
Confidence 864
No 313
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.6e-35 Score=365.82 Aligned_cols=213 Identities=28% Similarity=0.377 Sum_probs=175.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.++. ..++.+|+|+|++++|||.++|+||||||||||+|+|+|..+ |.+|+|.+||.++
T Consensus 337 ~i~~~~v~f~y~~----------~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~--p~~G~I~i~g~~i 404 (576)
T TIGR02204 337 EIEFEQVNFAYPA----------RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD--PQSGRILLDGVDL 404 (576)
T ss_pred eEEEEEEEEECCC----------CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEH
Confidence 5899999996531 112579999999999999999999999999999999999987 5689999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~ 722 (1174)
.+ ..+++.++|+||++.++ +.|++|||.++. + ..+. +.++++++..++ ++..|+.+|+.+
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf-~~Ti~~Ni~~~~----~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g 474 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLF-AASVMENIRYGR----P-DATD----EEVEAAARAAHAHEFISALPEGYDTYLGERG 474 (576)
T ss_pred HhcCHHHHHHhceEEccCCccc-cccHHHHHhcCC----C-CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCCC
Confidence 53 34567899999988765 579999998752 1 1222 234455555554 334577787754
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..||||||||++||||++++|++|+||||||+||+.+++.+.+.|+++. +++|+|++||++ +....+|+++.+. +
T Consensus 475 -~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~--~~~~~~d~vi~l~-~ 549 (576)
T TIGR02204 475 -VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRL--ATVLKADRIVVMD-Q 549 (576)
T ss_pred -CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEE-C
Confidence 4699999999999999999999999999999999999999999999985 489999999987 4567899999997 5
Q ss_pred cEEEEEcCCC
Q 001048 803 GRIIYFGPLG 812 (1174)
Q Consensus 803 G~~v~~G~~~ 812 (1174)
|++++.|+.+
T Consensus 550 g~~~~~g~~~ 559 (576)
T TIGR02204 550 GRIVAQGTHA 559 (576)
T ss_pred CEEEeeecHH
Confidence 8999999964
No 314
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-34 Score=292.36 Aligned_cols=229 Identities=24% Similarity=0.317 Sum_probs=192.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++.+|+++++. ++++||++||++|++||+.+||||||||||||.++|+|...+.+++|+|.++|+++
T Consensus 3 ~L~I~dLhv~v~------------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI 70 (251)
T COG0396 3 MLEIKDLHVEVE------------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70 (251)
T ss_pred eeEEeeeEEEec------------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence 478889988763 12589999999999999999999999999999999999988778999999999997
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCC
Q 001048 653 VQH----TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLS 727 (1174)
Q Consensus 653 ~~~----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LS 727 (1174)
... ..+.-+..-+|.|.-+|..|+.+.|..+...+........+..+.+++.++.++++. ..++.+.. ++|
T Consensus 71 ~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~----GFS 146 (251)
T COG0396 71 LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE----GFS 146 (251)
T ss_pred ccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC----CcC
Confidence 542 234457788999999999999999998765533221112345667888999999986 56666653 799
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHh--cceeEEecCcEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAF--DDLVLMKNGGRI 805 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~--d~~~~l~~~G~~ 805 (1174)
||||||..|+..++.+|++.+||||-||||..+-+.|.+.+++++++|.+++++||.. .+.+.. |++-++. +|+|
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~-~GrI 223 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLY-DGRI 223 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEE-CCEE
Confidence 9999999999999999999999999999999999999999999999999999999974 678887 8888887 5999
Q ss_pred EEEcCCCccchhhhhhhhhC
Q 001048 806 IYFGPLGQHSCKVIEYFECI 825 (1174)
Q Consensus 806 v~~G~~~~~~~~~~~~f~~~ 825 (1174)
+..|.+ ++.++++.-
T Consensus 224 v~sG~~-----el~~~le~~ 238 (251)
T COG0396 224 VKSGDP-----ELAEELEEK 238 (251)
T ss_pred EecCCH-----HHHHHHHHh
Confidence 999996 466666665
No 315
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=6.8e-35 Score=305.91 Aligned_cols=172 Identities=24% Similarity=0.454 Sum_probs=149.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++. .+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~-----------------~~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 64 (182)
T cd03215 4 VLEVRGLSVK-----------------GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPV 64 (182)
T ss_pred EEEEeccEEE-----------------eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 3777888762 18999999999999999999999999999999999887 5689999999886
Q ss_pred Ccc----cccceEEEEccCC---CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 653 VQH----TFARISGYCEQND---IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 653 ~~~----~~~~~~~~v~Q~~---~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
... ..++.++|++|++ .+++.+|++||+.+...
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------- 104 (182)
T cd03215 65 TRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------- 104 (182)
T ss_pred CccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------
Confidence 532 2356799999984 57788999999976421
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|+++ ++.+.+|+++++. +|++
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~-~G~i 182 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMY-EGRI 182 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEec-CCcC
Confidence 8999999999999999999999999999999999999999999999877899999999975 6777789888886 4653
No 316
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.2e-35 Score=318.24 Aligned_cols=209 Identities=21% Similarity=0.342 Sum_probs=165.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ..++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-----------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 68 (221)
T cd03244 2 DIEFKNVSLRYR-----------PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--LSSGSILIDGVDI 68 (221)
T ss_pred cEEEEEEEEecC-----------CCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEh
Confidence 367888887542 123479999999999999999999999999999999999876 5689999999876
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCccc-------ccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKD-------SLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-------~~~~~~~ 722 (1174)
.. ..+++.++|++|++.+++ .|++||+.+.. ... .+.+.+.++.+++.+..+ +..+. .
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-~ 136 (221)
T cd03244 69 SKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVVEE-G 136 (221)
T ss_pred HhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhccccccccccc-C
Confidence 43 234567999999988665 69999986431 111 123445556666544322 11221 2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++ ..+|+++++. +
T Consensus 137 ~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~-~ 212 (221)
T cd03244 137 GENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TI-IDSDRILVLD-K 212 (221)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-hhCCEEEEEE-C
Confidence 357999999999999999999999999999999999999999999999864 689999999975 34 5588888886 5
Q ss_pred cEEEEEcC
Q 001048 803 GRIIYFGP 810 (1174)
Q Consensus 803 G~~v~~G~ 810 (1174)
|++++.|+
T Consensus 213 g~~~~~~~ 220 (221)
T cd03244 213 GRVVEFDS 220 (221)
T ss_pred CeEEecCC
Confidence 89998876
No 317
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.2e-34 Score=354.40 Aligned_cols=223 Identities=20% Similarity=0.271 Sum_probs=180.0
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
.++++|+++.+... ...+.+|+|+||++++||++||+||||||||||+|+|+|..++. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 37889998865310 01247999999999999999999999999999999999987631 3689999999
Q ss_pred eeCCcc------cc-cceEEEEccCCC--CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc---cccc
Q 001048 650 YPKVQH------TF-ARISGYCEQNDI--HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI---KDSL 717 (1174)
Q Consensus 650 ~~~~~~------~~-~~~~~~v~Q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~ 717 (1174)
+++... .. ++.+||++|++. +.+.+|++||+.+..... ...+..+..++++++++.++|.+. .++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 986431 11 246899999864 567789999988654321 122344556778999999999763 3555
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcce
Q 001048 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 718 ~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
+ .+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++
T Consensus 154 ~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri 227 (529)
T PRK15134 154 P-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRV 227 (529)
T ss_pred C-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEE
Confidence 4 469999999999999999999999999999999999999999999999865 899999999975 566778999
Q ss_pred eEEecCcEEEEEcCCCc
Q 001048 797 VLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 797 ~~l~~~G~~v~~G~~~~ 813 (1174)
++|. +|++++.|++++
T Consensus 228 ~~l~-~G~i~~~g~~~~ 243 (529)
T PRK15134 228 AVMQ-NGRCVEQNRAAT 243 (529)
T ss_pred EEEE-CCEEEEeCCHHH
Confidence 8887 589999998743
No 318
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=5.5e-35 Score=305.60 Aligned_cols=175 Identities=25% Similarity=0.475 Sum_probs=148.2
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+. ..++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~~~~~~~-----------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 68 (178)
T cd03247 2 SINNVSFSYP-----------EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK--PQQGEITLDGVPVSD 68 (178)
T ss_pred EEEEEEEEeC-----------CCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCEEHHH
Confidence 5677776542 112369999999999999999999999999999999999877 568999999987532
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 655 --HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 655 --~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
...++.++|++|++.+++ .|++||+ ...|||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~q 105 (178)
T cd03247 69 LEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQ 105 (178)
T ss_pred HHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHH
Confidence 234567899999987765 6999986 1359999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|+|++||+++ . .+.+|+++++. +|++++.|
T Consensus 106 rv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~-~~~~d~~~~l~-~g~i~~~~ 178 (178)
T cd03247 106 RLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-G-IEHMDKILFLE-NGKIIMQG 178 (178)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-H-HHhCCEEEEEE-CCEEEecC
Confidence 9999999999999999999999999999999999999985 5899999999975 3 45688888886 58998764
No 319
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=324.61 Aligned_cols=216 Identities=22% Similarity=0.344 Sum_probs=189.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.+++++++..+ +...+++|||+++++||++||+|.||||||||+++|.|.++ |++|+|.++|++.
T Consensus 4 ~l~~~~itK~f-------------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v 68 (501)
T COG3845 4 ALEMRGITKRF-------------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEV 68 (501)
T ss_pred eEEEeccEEEc-------------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEe
Confidence 46777777643 35689999999999999999999999999999999999988 6799999999986
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 653 VQH----TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~~----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.-. ..+..||+|+|+..+.+++||.||+..+..-......+.+...++++++.+..||.--.|.+++ .||-
T Consensus 69 ~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsV 143 (501)
T COG3845 69 RIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSV 143 (501)
T ss_pred ccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCc
Confidence 432 2445689999999999999999999998643222344667778889999999999877888876 5999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||||.|-++|.++|++|||||||+-|-|...+++++.|++++++|+|||++||.+. |+.+.+|++.+|. .|+++..
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR-~Gkvvgt 221 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLR-RGKVVGT 221 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEe-CCeEEee
Confidence 9999999999999999999999999999999999999999999999999999999986 8999999999997 5898876
Q ss_pred cC
Q 001048 809 GP 810 (1174)
Q Consensus 809 G~ 810 (1174)
-+
T Consensus 222 ~~ 223 (501)
T COG3845 222 VD 223 (501)
T ss_pred ec
Confidence 66
No 320
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=6.4e-35 Score=303.43 Aligned_cols=169 Identities=28% Similarity=0.483 Sum_probs=145.2
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+. ..++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-----------~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 68 (173)
T cd03246 2 EVENVSFRYP-----------GAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQ 68 (173)
T ss_pred EEEEEEEEcC-----------CCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEccc
Confidence 5677776432 112469999999999999999999999999999999999877 568999999987643
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 655 ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 655 ---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
...++.++|++|++.+++ .|++||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~~ 102 (173)
T cd03246 69 WDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQR 102 (173)
T ss_pred CCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHHH
Confidence 234567899999987776 5999986 899999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ..+.+|+++++. +|++
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~-~G~i 173 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE--TLASADRILVLE-DGRV 173 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEEE-CCCC
Confidence 9999999999999999999999999999999999999999877999999999874 346788888886 4653
No 321
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.2e-34 Score=314.30 Aligned_cols=195 Identities=27% Similarity=0.395 Sum_probs=160.4
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCC--CCCCHHHHHHHHH
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHS--PNITVEESIVFSA 684 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~--~~lTv~e~l~~~~ 684 (1174)
|++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++.. ..++.++|++|++.++ +.+|+.||+.++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4789999999999999999999999999877 56899999998753 2346789999998663 3489999998753
Q ss_pred hhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHH
Q 001048 685 WLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAT 763 (1174)
Q Consensus 685 ~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~ 763 (1174)
..... .........+++.++++.+++.+..++.++ +||||||||++|||+|+.+|++++|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 001122334568889999999877776653 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 764 VMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 764 i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
+.+.|++++++|+|+|++||+++ ++.+.+|+++++ + |++++.|+.++
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~~ 198 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQQ 198 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHH
Confidence 99999999877999999999975 577788988877 5 89999998754
No 322
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.4e-35 Score=320.02 Aligned_cols=211 Identities=26% Similarity=0.396 Sum_probs=163.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+.. ..++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 78 (226)
T cd03248 11 IVKFQNVTFAYPT----------RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGKPI 78 (226)
T ss_pred eEEEEEEEEEeCC----------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCCch
Confidence 5889999886531 012469999999999999999999999999999999999877 5689999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHc--CCCCcccccccCCCCCCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI--ELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ...++.++|++|++.+++ .||+||+.++.................+++.++.+ |+.+..+..+ +.||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~~LS 152 (226)
T cd03248 79 SQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKG-----SQLS 152 (226)
T ss_pred HHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCC-----CcCC
Confidence 32 223467899999987765 69999998753211000000011112346677777 6665544443 4799
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
|||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+ +.+|+++++. +|++
T Consensus 153 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~-~g~i 226 (226)
T cd03248 153 GGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLD-GGRI 226 (226)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEec-CCcC
Confidence 9999999999999999999999999999999999999999999865 699999999975 44 5688888886 4653
No 323
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.4e-35 Score=299.79 Aligned_cols=219 Identities=21% Similarity=0.359 Sum_probs=182.6
Q ss_pred CccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECC
Q 001048 570 EPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG 649 (1174)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 649 (1174)
...-++++|++... +++++|+|+|++|+|||-.+|+|||||||||||++++|..+ +.+|.+.+.|
T Consensus 28 ~~~li~l~~v~v~r-------------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~--pssg~~~~~G 92 (257)
T COG1119 28 NEPLIELKNVSVRR-------------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP--PSSGDVTLLG 92 (257)
T ss_pred CcceEEecceEEEE-------------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC--CCCCceeeee
Confidence 34568999998743 46899999999999999999999999999999999999887 4589999999
Q ss_pred eeCCc----ccccceEEEEccC--CCCCCCCCHHHHHHHHH--hhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCC
Q 001048 650 YPKVQ----HTFARISGYCEQN--DIHSPNITVEESIVFSA--WLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP 721 (1174)
Q Consensus 650 ~~~~~----~~~~~~~~~v~Q~--~~~~~~lTv~e~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 721 (1174)
++... .+.|+.||+|.-+ ..+.++.+|+|-+.-+. ..........++..+++..+++.+|+.+.+|+..+
T Consensus 93 ~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~-- 170 (257)
T COG1119 93 RRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG-- 170 (257)
T ss_pred eeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh--
Confidence 87643 3467889999832 34456778888776432 12222212335567788999999999999998876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEecCCCHHHHHHhcceeEE
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET--GRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
.||-||||||-|||||+++|++||||||++|||...++.+.+.|.+++.. +.++|+|||+++ ++-..+++++++
T Consensus 171 ---~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll 246 (257)
T COG1119 171 ---SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLL 246 (257)
T ss_pred ---hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEe
Confidence 59999999999999999999999999999999999999999999999865 889999999986 888899999998
Q ss_pred ecCcEEEEEcC
Q 001048 800 KNGGRIIYFGP 810 (1174)
Q Consensus 800 ~~~G~~v~~G~ 810 (1174)
. +|+++++|.
T Consensus 247 ~-~g~v~~~g~ 256 (257)
T COG1119 247 K-EGEVVAQGK 256 (257)
T ss_pred e-CCceeeccc
Confidence 7 589999874
No 324
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.8e-34 Score=307.41 Aligned_cols=183 Identities=26% Similarity=0.335 Sum_probs=152.3
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+ +++.+++|+||++++||+++|+||||||||||+++|+|..+..+.+|+|.+||+++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~ 68 (200)
T cd03217 2 EIKDLHVSV-------------GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68 (200)
T ss_pred eEEEEEEEe-------------CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc
Confidence 567777643 1346999999999999999999999999999999999984212568999999998753
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 655 H---T-FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 655 ~---~-~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
. . .++.++|++|++.+++..|+++++ +.. .+.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l----------------------------------~~~-----~~~LS~G~ 109 (200)
T cd03217 69 LPPEERARLGIFLAFQYPPEIPGVKNADFL----------------------------------RYV-----NEGFSGGE 109 (200)
T ss_pred CCHHHHhhCcEEEeecChhhccCccHHHHH----------------------------------hhc-----cccCCHHH
Confidence 2 1 234589999998888888888765 000 12599999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHH-HhcceeEEecCcEEEEEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFE-AFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~-~~d~~~~l~~~G~~v~~G 809 (1174)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++ .+.+ .+|+++++. +|++++.|
T Consensus 110 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~-~G~i~~~~ 187 (200)
T cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLY-DGRIVKSG 187 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEE-CCEEEEEc
Confidence 99999999999999999999999999999999999999999877899999999975 3444 689888886 58999999
Q ss_pred CC
Q 001048 810 PL 811 (1174)
Q Consensus 810 ~~ 811 (1174)
+.
T Consensus 188 ~~ 189 (200)
T cd03217 188 DK 189 (200)
T ss_pred cH
Confidence 54
No 325
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.1e-33 Score=351.18 Aligned_cols=124 Identities=25% Similarity=0.365 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhhc---CCcEEE
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELVA---NPSIIF 748 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~---~p~ill 748 (1174)
++||.|.+.|...+. . .....++++.+||... .+..+ +.||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 468888888865432 1 1124567888998653 34443 4699999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCCC
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPLG 812 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~ 812 (1174)
|||||+|||+.+...+++.|+++.++|.|||+++|+++ +.+.+|+++.|. ++|++++.|+++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCHH
Confidence 99999999999999999999999888999999999874 457789888883 579999999874
No 326
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.1e-34 Score=307.94 Aligned_cols=199 Identities=21% Similarity=0.281 Sum_probs=159.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. ..++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-----------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 72 (207)
T cd03369 6 EIEVENLSVRYA-----------PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDI 72 (207)
T ss_pred eEEEEEEEEEeC-----------CCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEh
Confidence 478889888542 112469999999999999999999999999999999999877 5689999999876
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
.. ...++.++|++|++.+++ .|++||+.+.. .... +.+.+.++ + +.. ...||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~~~-----~~~LS~G 129 (207)
T cd03369 73 STIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----SEG-----GLNLSQG 129 (207)
T ss_pred HHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----cCC-----CCcCCHH
Confidence 32 224567999999987765 59999996531 1111 12333333 1 222 3479999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||+++ .+ ..+|+++++. +|++++.|
T Consensus 130 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~-~~~d~v~~l~-~g~i~~~g 205 (207)
T cd03369 130 QRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TI-IDYDKILVMD-AGEVKEYD 205 (207)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEE-CCEEEecC
Confidence 9999999999999999999999999999999999999999985 4899999999875 34 4588888887 58999888
Q ss_pred CC
Q 001048 810 PL 811 (1174)
Q Consensus 810 ~~ 811 (1174)
++
T Consensus 206 ~~ 207 (207)
T cd03369 206 HP 207 (207)
T ss_pred CC
Confidence 63
No 327
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-35 Score=323.12 Aligned_cols=223 Identities=27% Similarity=0.410 Sum_probs=182.2
Q ss_pred CCccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEEC
Q 001048 569 FEPLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIG 648 (1174)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~ 648 (1174)
.....+.|++++|.+. +++++|+|+||++++|+.+|++||||+||||++++|-+.++ +.+|.|.+|
T Consensus 258 ~~~g~v~F~~V~F~y~------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD--~~sG~I~id 323 (497)
T COG5265 258 VRLGAVAFINVSFAYD------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD--VNSGSITID 323 (497)
T ss_pred cccceEEEEEEEeecc------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC--CcCceEEEc
Confidence 3445699999999653 35789999999999999999999999999999999998777 569999999
Q ss_pred CeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 649 GYPKVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 649 g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
|+++.. ...|+.||.|||+..++ +-|+..|+.|+..-....+.....+...+...++ .+++..|+.+|+.|.+
T Consensus 324 ~qdir~vtq~slR~aIg~VPQDtvLF-NDti~yni~ygr~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgerglk- 399 (497)
T COG5265 324 GQDIRDVTQQSLRRAIGIVPQDTVLF-NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGLK- 399 (497)
T ss_pred chhHHHhHHHHHHHHhCcCcccceeh-hhhHHHHHhccCccccHHHHHHHHHHhhhhHHHH--hCchhhhcccchheee-
Confidence 998643 46788899999987764 6799999998743211111111112223344444 4577889999998875
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
|||||||||+|||+++++|+||+|||.||+||..+++.|+..|+++. .|+|.+++.|++| .+ -.+|.++++. +|+|
T Consensus 400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrls-ti-~~adeiivl~-~g~i 475 (497)
T COG5265 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLS-TI-IDADEIIVLD-NGRI 475 (497)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhh-hc-cCCceEEEee-CCEE
Confidence 99999999999999999999999999999999999999999999987 5899999999987 34 4578898887 5999
Q ss_pred EEEcCCCc
Q 001048 806 IYFGPLGQ 813 (1174)
Q Consensus 806 v~~G~~~~ 813 (1174)
++.|+.++
T Consensus 476 ~erg~h~~ 483 (497)
T COG5265 476 VERGTHEE 483 (497)
T ss_pred EecCcHHH
Confidence 99999743
No 328
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.4e-35 Score=322.52 Aligned_cols=213 Identities=22% Similarity=0.294 Sum_probs=164.4
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+. ..++.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|++
T Consensus 18 ~~i~~~~l~~~~~-----------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~ 84 (257)
T cd03288 18 GEIKIHDLCVRYE-----------NNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGID 84 (257)
T ss_pred ceEEEEEEEEEeC-----------CCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEE
Confidence 3589999988652 112469999999999999999999999999999999999877 568999999988
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-------ccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-------KDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 721 (1174)
+.. ...++.++|++|++.+++ .|++||+.... .... +.+.+.++..++.+. .++..+.
T Consensus 85 i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~- 152 (257)
T cd03288 85 ISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVVTE- 152 (257)
T ss_pred hhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCH----HHHHHHHHHhCcHHHHhhcccccCcEecc-
Confidence 643 234567899999987765 59999985321 1111 112222232232221 1222322
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
....||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|+|++||+++ .+ ..+|+++++.
T Consensus 153 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~-~~~dri~~l~- 228 (257)
T cd03288 153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TI-LDADLVLVLS- 228 (257)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HH-HhCCEEEEEE-
Confidence 235799999999999999999999999999999999999999999999875 4899999999986 34 4588888887
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 229 ~G~i~~~g~~~~ 240 (257)
T cd03288 229 RGILVECDTPEN 240 (257)
T ss_pred CCEEEEeCCHHH
Confidence 599999998643
No 329
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2e-34 Score=349.84 Aligned_cols=207 Identities=16% Similarity=0.223 Sum_probs=172.3
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~ 68 (490)
T PRK10938 4 LQISQGTFRL-------------SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHIT 68 (490)
T ss_pred EEEEeEEEEc-------------CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccc
Confidence 7788998854 23469999999999999999999999999999999999877 56899999987653
Q ss_pred c---ccccceEEEEccCCCC--C------CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCC
Q 001048 654 Q---HTFARISGYCEQNDIH--S------PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPG 722 (1174)
Q Consensus 654 ~---~~~~~~~~~v~Q~~~~--~------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 722 (1174)
. ...++.++|++|++.. + ..+|++|++.+. .+..++++++++.+++.+..++.++
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~--- 134 (490)
T PRK10938 69 RLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFK--- 134 (490)
T ss_pred cCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcc---
Confidence 2 1234558999998543 1 147888887532 1224567889999999887777654
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +
T Consensus 135 --~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~-~ 210 (490)
T PRK10938 135 --YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLA-D 210 (490)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEE-C
Confidence 69999999999999999999999999999999999999999999999877999999999975 5667789998886 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|+++..|++++
T Consensus 211 G~i~~~~~~~~ 221 (490)
T PRK10938 211 CTLAETGEREE 221 (490)
T ss_pred CEEEEeCCHHH
Confidence 99999998643
No 330
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.5e-32 Score=306.20 Aligned_cols=221 Identities=20% Similarity=0.355 Sum_probs=182.3
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|++.... .+.+.+++|||++++||+++|.|-.|-|-+.|+.+|+|..+ +.+|+|.++|++
T Consensus 256 ~vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~--~~~G~I~l~G~~ 321 (501)
T COG3845 256 VVLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK--PASGRILLNGKD 321 (501)
T ss_pred eEEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc--cCCceEEECCEe
Confidence 3588888886421 12478999999999999999999999999999999999876 346999999998
Q ss_pred C-C---ccc-ccceEEEEccCC---CCCCCCCHHHHHHHHHhhcc----CCCCCHHHHHHHHHHHHHHcCCCCc-ccccc
Q 001048 652 K-V---QHT-FARISGYCEQND---IHSPNITVEESIVFSAWLRL----STQIDSKTKAEFVNEVLQTIELDGI-KDSLV 718 (1174)
Q Consensus 652 ~-~---~~~-~~~~~~~v~Q~~---~~~~~lTv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~ 718 (1174)
+ . ... .+..++|||.|. .+.+.+|+.||+.+...-+. ....+.....+..+++++.++.... .+..
T Consensus 322 v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~- 400 (501)
T COG3845 322 VLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP- 400 (501)
T ss_pred ccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc-
Confidence 6 2 122 234589999874 45689999999998753221 1124556777888999999987632 2222
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeE
Q 001048 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVL 798 (1174)
Q Consensus 719 ~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 798 (1174)
.+.||||++||+-+||+|.++|++|+..+||.|||..+...|.+.|.+++++|+.|++++-+++ ++++.+|++.+
T Consensus 401 ----a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaV 475 (501)
T COG3845 401 ----ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAV 475 (501)
T ss_pred ----hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeee
Confidence 3579999999999999999999999999999999999999999999999999999999999997 89999999999
Q ss_pred EecCcEEEEEcCCCc
Q 001048 799 MKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 799 l~~~G~~v~~G~~~~ 813 (1174)
+. +|+++...++++
T Consensus 476 i~-~Gri~~~~~~~~ 489 (501)
T COG3845 476 IY-EGRIVGIVPPEE 489 (501)
T ss_pred ee-CCceeccccccc
Confidence 98 599998888764
No 331
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.8e-34 Score=302.48 Aligned_cols=183 Identities=20% Similarity=0.291 Sum_probs=152.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. ++.+++ +||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccC
Confidence 56788887541 234555 999999999999999999999999999999877 56899999998764
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH
Q 001048 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733 (1174)
Q Consensus 654 ~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 733 (1174)
... ++.++|++|++.+++..||+||+.+..... . ..++++++++.+++.+..++.+ +.||||||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHH
Confidence 322 345899999988888999999998865322 1 1345677888899877666654 3699999999
Q ss_pred HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 734 v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
++|||||+.+|++++|||||+|||+.++..+.+.|++..++|+|+|++||+++
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999877667999999999975
No 332
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.1e-34 Score=301.68 Aligned_cols=165 Identities=30% Similarity=0.495 Sum_probs=139.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccceEEEEccCCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~Q~~~~~~~lT 675 (1174)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++... .+++.++|++|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q--------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASLSPKELARKIAYVPQ--------- 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcCCHHHHHHHHhHHHH---------
Confidence 469999999999999999999999999999999999877 5689999999876431 22345677777
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
+++.+++.+..++.+ +.||||||||++|||+|+.+|++++|||||+|
T Consensus 81 ----------------------------~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~~ 127 (180)
T cd03214 81 ----------------------------ALELLGLAHLADRPF-----NELSGGERQRVLLARALAQEPPILLLDEPTSH 127 (180)
T ss_pred ----------------------------HHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 455566655444443 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 756 LDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|+++++. +|++++.|
T Consensus 128 LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~-~g~i~~~~ 180 (180)
T cd03214 128 LDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLK-DGRIVAQG 180 (180)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 9999999999999999776 899999999975 5667889998887 58987654
No 333
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.1e-32 Score=338.58 Aligned_cols=207 Identities=19% Similarity=0.272 Sum_probs=167.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|++|.++ +++++|+|+|+++++||.+||+||||||||||+++|+|.++ |.+|+|.+||+++
T Consensus 322 ~i~~~~v~f~y~------------~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~ 387 (547)
T PRK10522 322 TLELRNVTFAYQ------------DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPV 387 (547)
T ss_pred eEEEEEEEEEeC------------CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEC
Confidence 699999999763 12469999999999999999999999999999999999987 5699999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
.. ..+++.++||+|++.++ +.|++|| + .. ..++.++++++.+++.+..+..-|......||||
T Consensus 388 ~~~~~~~~~~~i~~v~q~~~lf-~~ti~~n---~------~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgG 453 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTDFHLF-DQLLGPE---G------KP----ANPALVEKWLERLKMAHKLELEDGRISNLKLSKG 453 (547)
T ss_pred CCCCHHHHhhheEEEecChhHH-HHhhccc---c------Cc----hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHH
Confidence 54 24667899999988765 4688887 1 01 1234567788888886543321110012469999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||++|||||+++|++|+||||||+||+.+++.+.+.|.+..+ +|+|+|++||++ +..+.+|+++++. +|++++.
T Consensus 454 q~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~-~G~i~e~ 530 (547)
T PRK10522 454 QKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMR-NGQLSEL 530 (547)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEE-CCEEEEe
Confidence 99999999999999999999999999999999999999986643 589999999987 4577899999997 5899877
Q ss_pred cC
Q 001048 809 GP 810 (1174)
Q Consensus 809 G~ 810 (1174)
..
T Consensus 531 ~~ 532 (547)
T PRK10522 531 TG 532 (547)
T ss_pred cC
Confidence 44
No 334
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=5.1e-34 Score=325.48 Aligned_cols=185 Identities=29% Similarity=0.428 Sum_probs=159.2
Q ss_pred EecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHH
Q 001048 617 LMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSK 695 (1174)
Q Consensus 617 l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~ 695 (1174)
|+||||||||||+++|+|..+ +.+|+|.++|+++... ..++.++|++|++.+++.+||+||+.|+...+ .....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 689999999999999999987 5699999999986432 23567999999999999999999999986432 22334
Q ss_pred HHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 001048 696 TKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET- 774 (1174)
Q Consensus 696 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 774 (1174)
+..++++++++.+++.+..++.. ..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 45567889999999988777765 369999999999999999999999999999999999999999999999765
Q ss_pred CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 775 GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 775 g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|+|+|++||+++ ++...+|+++++. +|+++..|++++
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~-~G~i~~~g~~~~ 187 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMR-KGKIAQIGTPEE 187 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 899999999975 6777889998887 599999998754
No 335
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=6.3e-33 Score=340.71 Aligned_cols=211 Identities=18% Similarity=0.247 Sum_probs=167.6
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++||+|.++..+ ..++++|+|+|+++++||.++|+||||||||||+++|+|..+ |.+|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~~~--------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--p~~G~i~~~g~~ 405 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE--------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI--PQEGEILLDGAA 405 (555)
T ss_pred ceEEEEEEEEEeCCCC--------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 4699999999764210 012369999999999999999999999999999999999887 569999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCccccc-ccCCCCCCCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL-VGLPGVNGLS 727 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~LS 727 (1174)
+.. ..+++.++||+|++.++ +.|+++|+. + ...++.++++++.+++.+..+.. -|......||
T Consensus 406 i~~~~~~~~~~~i~~v~q~~~lf-~~ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS 472 (555)
T TIGR01194 406 VSADSRDDYRDLFSAIFADFHLF-DDLIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALS 472 (555)
T ss_pred CCCCCHHHHHhhCcEEccChhhh-hhhhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence 754 34567899999987765 468888841 1 12234567788888887543322 1221124699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK-NVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~-~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
||||||++|||||+++|++|+||||||+||+.+++.+.+.+. .++.+|+|+|++||+++ ..+.+|+++++. +|+++
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~-~G~i~ 549 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLA-AGCIV 549 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEE-CCEEE
Confidence 999999999999999999999999999999999999998664 45556899999999874 567899999997 58987
Q ss_pred EE
Q 001048 807 YF 808 (1174)
Q Consensus 807 ~~ 808 (1174)
+.
T Consensus 550 ~~ 551 (555)
T TIGR01194 550 KD 551 (555)
T ss_pred Ee
Confidence 64
No 336
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=9.4e-34 Score=292.06 Aligned_cols=152 Identities=28% Similarity=0.411 Sum_probs=134.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|. +.++|++|++.+ +..|++|
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~--------~~i~~~~q~~~~-~~~tv~~ 82 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG--------EDLLFLPQRPYL-PLGTLRE 82 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC--------ceEEEECCCCcc-ccccHHH
Confidence 469999999999999999999999999999999999877 56899999873 568999999765 4679999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
|+.+. . ...||||||||++|||||+.+|++++|||||+|||+
T Consensus 83 nl~~~---------------------------------~-----~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 83 QLIYP---------------------------------W-----DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred Hhhcc---------------------------------C-----CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 98652 0 136999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 759 RAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.++..+.+.|+++ ++|+|++||+++ ....+|+++++.++|.
T Consensus 125 ~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~~ 165 (166)
T cd03223 125 ESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEGG 165 (166)
T ss_pred HHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCCC
Confidence 9999999999876 689999999974 4578999999987763
No 337
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.3e-33 Score=290.09 Aligned_cols=157 Identities=25% Similarity=0.420 Sum_probs=136.5
Q ss_pred EEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc
Q 001048 575 TFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 654 (1174)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 654 (1174)
+++|+++.+. ++++++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++..
T Consensus 2 ~~~~l~~~~~-------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~ 66 (163)
T cd03216 2 ELRGITKRFG-------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSF 66 (163)
T ss_pred EEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCc
Confidence 5677777542 3479999999999999999999999999999999999887 568999999987643
Q ss_pred c----cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 655 H----TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 655 ~----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
. ..++.++|++| |||||
T Consensus 67 ~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G~ 87 (163)
T cd03216 67 ASPRDARRAGIAMVYQ-----------------------------------------------------------LSVGE 87 (163)
T ss_pred CCHHHHHhcCeEEEEe-----------------------------------------------------------cCHHH
Confidence 2 13456788887 99999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||++|||||+.+|++++|||||+|||+.+++.+.+.|++++++|+|+|++||+++ ++.+.+|+++++. +|++++
T Consensus 88 ~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~-~g~i~~ 162 (163)
T cd03216 88 RQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLR-DGRVVG 162 (163)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEe
Confidence 99999999999999999999999999999999999999999877999999999864 4667788888886 588875
No 338
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=9.6e-34 Score=303.37 Aligned_cols=179 Identities=25% Similarity=0.390 Sum_probs=140.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++| .++|++|++.++ ..|++|
T Consensus 18 ~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g----------~i~~~~q~~~l~-~~t~~e 84 (204)
T cd03250 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG----------SIAYVSQEPWIQ-NGTIRE 84 (204)
T ss_pred cceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC----------EEEEEecCchhc-cCcHHH
Confidence 369999999999999999999999999999999999877 5689999998 489999998876 579999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-------cccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeC
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-------IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 751 (1174)
|+.+... .... ...+.++.+++.+ ..++....+ ...||||||||++|||+|+.+|++++|||
T Consensus 85 nl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~lS~G~~qrv~laral~~~p~llllDE 153 (204)
T cd03250 85 NILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIGEK-GINLSGGQKQRISLARAVYSDADIYLLDD 153 (204)
T ss_pred HhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9987421 1111 1222333333321 112223222 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 752 PTSGLDARAAATVMR-AVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
||+|||+.+++.+.+ +++++.++|+|||++||+++ .+. .+|+++++.+ |+
T Consensus 154 P~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~-~~d~i~~l~~-G~ 204 (204)
T cd03250 154 PLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLP-HADQIVVLDN-GR 204 (204)
T ss_pred ccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHh-hCCEEEEEeC-CC
Confidence 999999999999998 56666666899999999975 344 4888888864 53
No 339
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=2.2e-32 Score=348.63 Aligned_cols=207 Identities=25% Similarity=0.414 Sum_probs=183.0
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc----cccceEEEEccCCCCCCCCCH
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+++++|+.|++||+.+++|+|||||||++|+|.|..+ +++|++.++|.++... +.++.+||+||+|.+.+.+|.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 9999999999999999999999999999999999887 6799999999887531 256789999999999999999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
||++.+.++++ +....+.++.++++++.++|.+.+|+.++ .+|||+|||+++|.||+.+|++++|||||+|+
T Consensus 658 rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkLs~aialig~p~vi~LDEPstGm 729 (885)
T KOG0059|consen 658 REHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRLSFAIALIGDPSVILLDEPSTGL 729 (885)
T ss_pred HHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhHHHHHHHhcCCCEEEecCCCCCC
Confidence 99999999887 44555667779999999999999999875 59999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCccchhhhhhhh
Q 001048 757 DARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFE 823 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~ 823 (1174)
||.+++.+++.+++++++|+.+|+|||-.+ +....|||+.++. .|++...|+++ ++...|.
T Consensus 730 DP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv-~G~l~ciGs~q----~LKsrfG 790 (885)
T KOG0059|consen 730 DPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMV-IGQLRCIGSPQ----ELKSRYG 790 (885)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheee-cCeeEEecChH----HHHhhcC
Confidence 999999999999999988889999999654 4555678888877 59999999984 4554443
No 340
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.5e-33 Score=306.88 Aligned_cols=201 Identities=22% Similarity=0.263 Sum_probs=158.8
Q ss_pred cccccceeEEe-----CCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCC
Q 001048 600 QLLSDITGTFR-----PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNI 674 (1174)
Q Consensus 600 ~iL~~vs~~i~-----~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~l 674 (1174)
+.++|++++++ +||+++|+||||||||||+++|+|..+ +.+|+|.++|. .++|++|+....+.+
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~---------~i~~~~q~~~~~~~~ 76 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD---------TVSYKPQYIKADYEG 76 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc---------eEEEecccccCCCCC
Confidence 36777777776 799999999999999999999999877 56899999884 479999998777889
Q ss_pred CHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCC
Q 001048 675 TVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 754 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 754 (1174)
||+|++.+...... . ..+..+++++.+++.+..++.++ .|||||||||+||++|+.+|++++|||||+
T Consensus 77 tv~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~iaraL~~~p~llllDEPt~ 144 (246)
T cd03237 77 TVRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREVP-----ELSGGELQRVAIAACLSKDADIYLLDEPSA 144 (246)
T ss_pred CHHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999976432110 0 12235678889999877776653 699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE--EEcCCCccchhhhhhhhhC
Q 001048 755 GLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII--YFGPLGQHSCKVIEYFECI 825 (1174)
Q Consensus 755 gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v--~~G~~~~~~~~~~~~f~~~ 825 (1174)
+||+.++..+.+.|++++++ |+|||++||+++ .+...+|+++++. ++..+ ..+++......+..|++..
T Consensus 145 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (246)
T cd03237 145 YLDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFE-GEPSVNGVANPPQSLRSGMNRFLKNL 216 (246)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEc-CCCeeEEEeCCchHHHHHHHHHHHHC
Confidence 99999999999999999764 899999999874 4556788888884 33222 3344433334556666654
No 341
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-33 Score=293.69 Aligned_cols=153 Identities=33% Similarity=0.543 Sum_probs=134.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCCH
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++.+++ .|+
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~ 92 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTI 92 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chH
Confidence 69999999999999999999999999999999999877 468999999987642 234567899999987665 699
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
.||+ ||||||||++|||+|+.+|++|+|||||+||
T Consensus 93 ~e~l---------------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gL 127 (171)
T cd03228 93 RENI---------------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSAL 127 (171)
T ss_pred HHHh---------------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCC
Confidence 8886 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 757 DARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|+.++..+.+.|+++.+ ++|+|++||+++ .+ +.+|+++++.+ |+
T Consensus 128 D~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~~~~l~~-g~ 171 (171)
T cd03228 128 DPETEALILEALRALAK-GKTVIVIAHRLS-TI-RDADRIIVLDD-GR 171 (171)
T ss_pred CHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HH-HhCCEEEEEcC-CC
Confidence 99999999999999864 799999999975 44 44888888864 53
No 342
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.6e-34 Score=278.96 Aligned_cols=218 Identities=24% Similarity=0.357 Sum_probs=181.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECC-ee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG-YP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g-~~ 651 (1174)
.++.+|++.+. ++..+|+|+||++.+||+-+|+|||||||||+|++|+|... |..|++.++| .+
T Consensus 5 iL~~~~vsVsF-------------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr--p~~G~v~f~g~~d 69 (249)
T COG4674 5 ILYLDGVSVSF-------------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR--PQEGEVLFDGDTD 69 (249)
T ss_pred eEEEeceEEEE-------------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC--CCcceEEEcCchh
Confidence 46677777643 34689999999999999999999999999999999999877 5689999999 56
Q ss_pred CCcc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC-----CCCHHHHHHHHHHHHHHcCCCCcccccccCCC
Q 001048 652 KVQH---T-FARISGYCEQNDIHSPNITVEESIVFSAWLRLST-----QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPG 722 (1174)
Q Consensus 652 ~~~~---~-~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 722 (1174)
+... . .+.-||--+|.|..|+++||+|||..+.....+- .....+.+++++++++..||.+.+|...+
T Consensus 70 l~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~--- 146 (249)
T COG4674 70 LTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA--- 146 (249)
T ss_pred hccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh---
Confidence 5432 2 2345788999999999999999999875322110 01123445689999999999999888876
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
.||.||||++.|+.-++++|++|+||||++|+-.....+.-++|+.++. +++|+++.||.. -+.+.++++.+|. .
T Consensus 147 --~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh-~ 221 (249)
T COG4674 147 --LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLH-E 221 (249)
T ss_pred --hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEe-c
Confidence 4999999999999999999999999999999999999999999999986 689999999875 4566778888887 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|.+...|+.++
T Consensus 222 G~VL~EGsld~ 232 (249)
T COG4674 222 GSVLAEGSLDE 232 (249)
T ss_pred cceeecccHHH
Confidence 99999999764
No 343
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3e-33 Score=302.75 Aligned_cols=188 Identities=28% Similarity=0.370 Sum_probs=147.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------cccceEEEEccCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-------TFARISGYCEQNDIHS 671 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~Q~~~~~ 671 (1174)
+.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++.... ..++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 579999999999999999999999999999999999876 4689999999875321 1345689999998776
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcc-------cccccCCCCCCCCHHHHHHHHHHHHhhcCC
Q 001048 672 PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIK-------DSLVGLPGVNGLSTEQRKRLTIAVELVANP 744 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~~~~LSgGqrqRv~ia~al~~~p 744 (1174)
..|++||+.+... ... +..+++++.+++.+.. ++..+.+ +..|||||||||+|||+|+.+|
T Consensus 92 -~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 92 -NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIGER-GINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred -cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCcccC-CCcCCHHHHHHHHHHHHHhhCC
Confidence 6799999987421 111 1123445555553321 1222222 3579999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHH--HHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 745 SIIFMDEPTSGLDARAAATVMR--AVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 745 ~illlDEPtsgLD~~~~~~i~~--~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
++|||||||+|||+.++..+++ .++.++++|+|+|++||+++ .+ ..+|+++++. +|
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~-~G 217 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMK-DG 217 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEec-CC
Confidence 9999999999999999999998 66666666899999999975 34 5688888775 45
No 344
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=9.5e-33 Score=343.24 Aligned_cols=219 Identities=23% Similarity=0.368 Sum_probs=184.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+... .+.+.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.+||+++
T Consensus 4 ~l~~~nl~~~y~~~---------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i 72 (648)
T PRK10535 4 LLELKDIRRSYPSG---------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDV 72 (648)
T ss_pred EEEEeeEEEEeCCC---------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEc
Confidence 48899998865310 112469999999999999999999999999999999999987 5689999999986
Q ss_pred Ccc---c----ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 653 VQH---T----FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 653 ~~~---~----~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
... . .++.++|++|++.+++.+|+.||+.+..... .....+.++++.++++.+++.+..|+..+ .
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~-----~ 144 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPS-----Q 144 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcc-----c
Confidence 532 1 1457899999999999999999999865322 22334556678899999999887777653 6
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|++||+++ ..+.+|+++++. +|++
T Consensus 145 LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~-~G~i 221 (648)
T PRK10535 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIR-DGEI 221 (648)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEE-CCEE
Confidence 9999999999999999999999999999999999999999999999877999999999864 456789888887 5999
Q ss_pred EEEcCCCc
Q 001048 806 IYFGPLGQ 813 (1174)
Q Consensus 806 v~~G~~~~ 813 (1174)
++.|++++
T Consensus 222 ~~~g~~~~ 229 (648)
T PRK10535 222 VRNPPAQE 229 (648)
T ss_pred EeecCccc
Confidence 99999864
No 345
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7.5e-33 Score=308.13 Aligned_cols=199 Identities=21% Similarity=0.373 Sum_probs=155.8
Q ss_pred ccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 571 PLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
+..++++|+++. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 37 ~~~l~i~nls~~---------------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i~g- 98 (282)
T cd03291 37 DNNLFFSNLCLV---------------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKHSG- 98 (282)
T ss_pred CCeEEEEEEEEe---------------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC-
Confidence 446899999872 2469999999999999999999999999999999999887 5689999988
Q ss_pred eCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-------cccccccCCCC
Q 001048 651 PKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-------IKDSLVGLPGV 723 (1174)
Q Consensus 651 ~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~ 723 (1174)
.++|++|++.+++ .||+||+.++... ... .+.+.++.+++.+ ..++.++. ..
T Consensus 99 ---------~i~yv~q~~~l~~-~tv~enl~~~~~~------~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~~ 157 (282)
T cd03291 99 ---------RISFSSQFSWIMP-GTIKENIIFGVSY------DEY----RYKSVVKACQLEEDITKFPEKDNTVLGE-GG 157 (282)
T ss_pred ---------EEEEEeCcccccc-cCHHHHhhccccc------CHH----HHHHHHHHhCCHHHHHhccccccceecC-CC
Confidence 2799999987766 5999999874211 111 1122333333322 12233332 23
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV-KNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l-~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.+ ++++ ++.|||++||+++ . ...+|+++++. +
T Consensus 158 ~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~-~~~~d~i~~l~-~ 233 (282)
T cd03291 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-H-LKKADKILILH-E 233 (282)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-H-HHhCCEEEEEE-C
Confidence 479999999999999999999999999999999999999999865 5554 4799999999975 3 46788888886 5
Q ss_pred cEEEEEcCCC
Q 001048 803 GRIIYFGPLG 812 (1174)
Q Consensus 803 G~~v~~G~~~ 812 (1174)
|++++.|+++
T Consensus 234 G~i~~~g~~~ 243 (282)
T cd03291 234 GSSYFYGTFS 243 (282)
T ss_pred CEEEEECCHH
Confidence 8999999864
No 346
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=292.39 Aligned_cols=202 Identities=27% Similarity=0.413 Sum_probs=173.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc--ccccceEEEEc-cCCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCE-QNDIHSPNIT 675 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-Q~~~~~~~lT 675 (1174)
..+++|+||+|++|++++++|||||||||+||+|+|... |.+|.|.++|.+.-. ..+-+.+++|+ |.-.+...+-
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 468999999999999999999999999999999999887 579999999986432 23445667766 5455666667
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
+.|.+.....++ +++.++-+++.+.+.+.+++++..+..+ |.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 888877655444 5666777888999999999998877765 56999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 756 LDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
||..++..|.+.|++..+ .+.||+.+||+.+ ++...||++++++ .|+++|.|+.+
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~-~Gqlv~dg~l~ 242 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLID-QGQLVFDGTLA 242 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEee-CCcEeecccHH
Confidence 999999999999999875 4899999999997 8999999999887 59999999974
No 347
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-33 Score=294.56 Aligned_cols=190 Identities=27% Similarity=0.405 Sum_probs=156.7
Q ss_pred EEEEeceEEEEeeCCcccccccccc-cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQT-RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
-++.+|++.++..... +... ...+++||||+|++||+++|+|+||||||||-|+|.|+.+ |++|+|.++|++
T Consensus 4 ll~v~~l~k~f~~~~~-----~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~ 76 (268)
T COG4608 4 LLEVKNLKKYFPVGKG-----FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKD 76 (268)
T ss_pred eEEEeccEEEEecccc-----cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcc
Confidence 4778888876655432 1111 2589999999999999999999999999999999999988 679999999987
Q ss_pred CCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHH
Q 001048 652 KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 652 ~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGq 730 (1174)
+.... ..++.+++.++++.+|+.. ..++ + +++|||||
T Consensus 77 i~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~~r---y--PhelSGGQ 114 (268)
T COG4608 77 ITKLS-------------------------------------KEERRERVLELLEKVGLPEEFLYR---Y--PHELSGGQ 114 (268)
T ss_pred hhhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHhhc---C--CcccCchh
Confidence 54321 2345677899999999764 2333 2 46899999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
|||++|||||+.+|+++++|||||+||...+.+|+++|+++.++ |.|.++++||.+ -+...+|++.+|. .|++|+.|
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy-~G~iVE~g 192 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMY-LGKIVEIG 192 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEe-cCceeEec
Confidence 99999999999999999999999999999999999999999865 999999999975 4555667777776 59999999
Q ss_pred CCCc
Q 001048 810 PLGQ 813 (1174)
Q Consensus 810 ~~~~ 813 (1174)
+.++
T Consensus 193 ~~~~ 196 (268)
T COG4608 193 PTEE 196 (268)
T ss_pred CHHH
Confidence 9753
No 348
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=9.8e-33 Score=296.43 Aligned_cols=188 Identities=21% Similarity=0.212 Sum_probs=150.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEE-ECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR-IGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
++|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|. ++|... .+.|++.+++.+|++|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDAL----------PLGANSFILPGLTGEE 68 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCcee----------ccccccccCCcCcHHH
Confidence 37899999999999999999999999999999999876 5689997 776532 1224566788999999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
|+.+..... ....++. .+.+.+.+++.+..++.++ .||||||||++|||||+.+|++++|||||+++|+
T Consensus 69 nl~~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHc---CCCHHHH---HHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 999876543 1222222 2334455677776676654 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 759 RAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
.++..+.+.+.+..+ ++|+|++||+++ .+.+.+|+++++. +|++++.|+.++
T Consensus 138 ~~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~~ 189 (213)
T PRK15177 138 ATQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLL-HGKITMCEDLAQ 189 (213)
T ss_pred HHHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEE-CCeEEEeCCHHH
Confidence 999999998865443 578999999975 5666789888886 599999999753
No 349
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3.5e-32 Score=294.34 Aligned_cols=226 Identities=21% Similarity=0.282 Sum_probs=185.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC---eEEEEEEECC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 649 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 649 (1174)
-++.+|++...... .+...++++|||++++||.+||+|.||||||-..+.+.|+.+.. ..+|+|.++|
T Consensus 6 lL~v~nLsV~f~~~---------~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G 76 (534)
T COG4172 6 LLSIRNLSVAFHQE---------GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDG 76 (534)
T ss_pred ceeeeccEEEEecC---------CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcC
Confidence 36777777655432 23578999999999999999999999999999999999976531 2479999999
Q ss_pred eeCCc---ccc---c-ceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccC
Q 001048 650 YPKVQ---HTF---A-RISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL 720 (1174)
Q Consensus 650 ~~~~~---~~~---~-~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 720 (1174)
+++-. ... | ..|++++|+| .+.|-.|+...+.-..+++ ...++++.++++.++++.+|+.+....+-.+
T Consensus 77 ~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~y 154 (534)
T COG4172 77 EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLDAY 154 (534)
T ss_pred hhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhhhC
Confidence 98532 112 2 3689999997 4667789988887765543 4567778888999999999999887776665
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEE
Q 001048 721 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 721 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
| ++|||||||||.||.||+.+|++||.||||++||...+.+|+++|++|.++ |..++++|||+. -+.+.+|++.+|
T Consensus 155 P--HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM 231 (534)
T COG4172 155 P--HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVM 231 (534)
T ss_pred C--cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEE
Confidence 5 589999999999999999999999999999999999999999999999765 999999999975 355566778777
Q ss_pred ecCcEEEEEcCCCc
Q 001048 800 KNGGRIIYFGPLGQ 813 (1174)
Q Consensus 800 ~~~G~~v~~G~~~~ 813 (1174)
. .|++++.|+.++
T Consensus 232 ~-~G~ivE~~~t~~ 244 (534)
T COG4172 232 Q-HGEIVETGTTET 244 (534)
T ss_pred e-ccEEeecCcHHH
Confidence 6 599999999754
No 350
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=274.54 Aligned_cols=205 Identities=24% Similarity=0.383 Sum_probs=164.2
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc---ccceEEEEccCCC--CCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT---FARISGYCEQNDI--HSP 672 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~---~~~~~~~v~Q~~~--~~~ 672 (1174)
++++|+++|++|.+|+++.|+|.||||||||+|+|+|... +++|+|.++|.+++... +...++-|+|+|. ..+
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~ 95 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAP 95 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcc
Confidence 5789999999999999999999999999999999999887 67999999999987543 2334677999964 579
Q ss_pred CCCHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHHc--CCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEE
Q 001048 673 NITVEESIVFSAWLRLSTQIDS---KTKAEFVNEVLQTI--ELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSII 747 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~l--~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~il 747 (1174)
.+|+.||+..+..-........ ..+.+...+-++.+ ||++..++.+|. |||||||-++++.|-++.|+||
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl-----LSGGQRQalsL~MAtl~~pkiL 170 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKIL 170 (263)
T ss_pred cccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh-----ccchHHHHHHHHHHhcCCCcEE
Confidence 9999999998753211111211 22233333444444 567778888773 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 748 FMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 748 llDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
+|||-|++|||.++..|++.=.++.++ +.|.+++||... +..++-+|.|++. +|+||.+-.-
T Consensus 171 LLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh-~G~IvlDv~g 233 (263)
T COG1101 171 LLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLH-SGKIVLDVTG 233 (263)
T ss_pred EecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEe-CCeEEEEccc
Confidence 999999999999999999999998754 789999999875 5566667777775 6999986543
No 351
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-32 Score=334.38 Aligned_cols=206 Identities=20% Similarity=0.333 Sum_probs=165.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++++|+|+||+|++||+++|+||||||||||||+|+|..+ +.+|+|.++|.
T Consensus 2 l~i~~ls~~~-------------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~--- 63 (530)
T PRK15064 2 LSTANITMQF-------------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN--- 63 (530)
T ss_pred EEEEEEEEEe-------------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC---
Confidence 5778888754 23579999999999999999999999999999999999877 45899999873
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHh-hc-----------cCC-C----------------CCHHHHHHHHHHH
Q 001048 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAW-LR-----------LST-Q----------------IDSKTKAEFVNEV 704 (1174)
Q Consensus 654 ~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~-~~-----------~~~-~----------------~~~~~~~~~~~~~ 704 (1174)
+.++|++|++.+++.+||+||+.++.. .+ .+. . ....+.+++++++
T Consensus 64 -----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 64 -----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred -----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 348999999888899999999987531 00 000 0 0001223567889
Q ss_pred HHHcCCCCcc-cccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec
Q 001048 705 LQTIELDGIK-DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH 783 (1174)
Q Consensus 705 l~~l~l~~~~-~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H 783 (1174)
++.+|+.+.. +..+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++||
T Consensus 139 l~~~gl~~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH 210 (530)
T PRK15064 139 LLGVGIPEEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISH 210 (530)
T ss_pred HHhCCCChhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeC
Confidence 9999997533 3333 36999999999999999999999999999999999999999999863 5899999999
Q ss_pred CCCHHHHHHhcceeEEecCcEE-EEEcCCC
Q 001048 784 QPSIDIFEAFDDLVLMKNGGRI-IYFGPLG 812 (1174)
Q Consensus 784 ~~~~~~~~~~d~~~~l~~~G~~-v~~G~~~ 812 (1174)
+++ .+.+.+|+++++. +|++ ++.|+++
T Consensus 211 d~~-~~~~~~d~i~~l~-~g~i~~~~g~~~ 238 (530)
T PRK15064 211 DRH-FLNSVCTHMADLD-YGELRVYPGNYD 238 (530)
T ss_pred CHH-HHHhhcceEEEEe-CCEEEEecCCHH
Confidence 975 5667789988887 5898 4788764
No 352
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.8e-32 Score=331.87 Aligned_cols=207 Identities=25% Similarity=0.342 Sum_probs=166.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. +++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 6 ~l~i~~l~~~y~------------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~~-- 69 (556)
T PRK11819 6 IYTMNRVSKVVP------------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAPG-- 69 (556)
T ss_pred EEEEeeEEEEeC------------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC--
Confidence 588999988541 13579999999999999999999999999999999999877 46899998752
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHh-hc------------cCCCCC--------------------HHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAW-LR------------LSTQID--------------------SKTKAE 699 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~-~~------------~~~~~~--------------------~~~~~~ 699 (1174)
..+|||+|++.+++.+||.||+.++.. .+ ...... ..+..+
T Consensus 70 ------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 70 ------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred ------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 358999999988899999999987531 00 000000 001234
Q ss_pred HHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Q 001048 700 FVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVV 779 (1174)
Q Consensus 700 ~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi 779 (1174)
+++++++.+|+.. .++.++ +|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||
T Consensus 144 ~~~~~l~~~gl~~-~~~~~~-----~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 214 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAKVT-----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVV 214 (556)
T ss_pred HHHHHHHhCCCCc-ccCchh-----hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEE
Confidence 6778899999854 555543 69999999999999999999999999999999999999999999986 25999
Q ss_pred EEecCCCHHHHHHhcceeEEecCcEEE-EEcCCC
Q 001048 780 CTIHQPSIDIFEAFDDLVLMKNGGRII-YFGPLG 812 (1174)
Q Consensus 780 ~~~H~~~~~~~~~~d~~~~l~~~G~~v-~~G~~~ 812 (1174)
++||+++ .+.+.+|+++++. +|+++ +.|+.+
T Consensus 215 iisHd~~-~~~~~~d~i~~l~-~g~i~~~~g~~~ 246 (556)
T PRK11819 215 AVTHDRY-FLDNVAGWILELD-RGRGIPWEGNYS 246 (556)
T ss_pred EEeCCHH-HHHhhcCeEEEEe-CCEEEEecCCHH
Confidence 9999975 5667788888887 58876 778753
No 353
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=257.99 Aligned_cols=195 Identities=26% Similarity=0.364 Sum_probs=163.4
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC-eEEEEEEECCeeCCc-ccccceEEEEccCCCCCCCC
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYPKVQ-HTFARISGYCEQNDIHSPNI 674 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~-~~~~~~~~~v~Q~~~~~~~l 674 (1174)
++...|-++|++|.+||++-||||||||||||+..+.|...+. ..+|++.+|+++++. ...+|++|..+||+.+||++
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 3568999999999999999999999999999999999976543 468999999998764 24567899999999999999
Q ss_pred CHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCC
Q 001048 675 TVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 754 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 754 (1174)
+|.+|+.|+. +.......+++.++..++..||.+..+.- +.+||||||-||++-|+|+..|+.++||||+|
T Consensus 93 sVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 93 SVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred ccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 9999999864 34445556777889999999999887664 24699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH-HHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 755 GLDARAAATVMRAVKN-VVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 755 gLD~~~~~~i~~~l~~-l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
.||..-+.+..+.+-. +...|..+|.+|||.. ++ . -|+++++.+--
T Consensus 164 ~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~-Dv-p---------agsrVie~~~~ 210 (213)
T COG4136 164 RLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ-DV-P---------AGSRVIEMAQW 210 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc-cC-C---------CCCeeeeeehh
Confidence 9999999999987654 4456999999999853 21 1 26777776543
No 354
>PLN03232 ABC transporter C family member; Provisional
Probab=99.98 E-value=5.8e-32 Score=362.50 Aligned_cols=204 Identities=27% Similarity=0.366 Sum_probs=165.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|++|.++.. .++++|+|+|+++++||.++|+||||||||||+++|.|..+ +.+|.+.
T Consensus 614 ~I~~~~vsF~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~G~i~------ 675 (1495)
T PLN03232 614 AISIKNGYFSWDSK----------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS--HAETSSV------ 675 (1495)
T ss_pred cEEEEeeEEEcCCC----------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc--ccCCCEE------
Confidence 58999999976421 13579999999999999999999999999999999999887 4566552
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCCCCCC
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~~~~~ 725 (1174)
..++.++||+|++.++ +.||+|||.|+.. .+ +++.+++++..+ +++..+|.+|+.|. +
T Consensus 676 ---~~~~~Iayv~Q~p~Lf-~gTIreNI~fg~~------~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~-~ 740 (1495)
T PLN03232 676 ---VIRGSVAYVPQVSWIF-NATVRENILFGSD------FE----SERYWRAIDVTALQHDLDLLPGRDLTEIGERGV-N 740 (1495)
T ss_pred ---EecCcEEEEcCccccc-cccHHHHhhcCCc------cC----HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCc-c
Confidence 2456789999998876 5799999998731 12 223444555444 34566899998876 5
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA-VKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
||||||||++||||+.++|+|++||||||+||+.+++++.+. ++.. .+|+|+|++||+++ ....+|+++++. +|+
T Consensus 741 LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~-~G~ 816 (1495)
T PLN03232 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVS-EGM 816 (1495)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEe-CCE
Confidence 999999999999999999999999999999999999988765 5544 35899999999974 567899999997 599
Q ss_pred EEEEcCCCc
Q 001048 805 IIYFGPLGQ 813 (1174)
Q Consensus 805 ~v~~G~~~~ 813 (1174)
+++.|+.++
T Consensus 817 i~~~Gt~~e 825 (1495)
T PLN03232 817 IKEEGTFAE 825 (1495)
T ss_pred EEEecCHHH
Confidence 999999754
No 355
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.98 E-value=5.7e-32 Score=297.18 Aligned_cols=192 Identities=21% Similarity=0.258 Sum_probs=156.1
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEE-----------ECCeeCCcc--c-cc--ceEEE
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR-----------IGGYPKVQH--T-FA--RISGY 663 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~--~-~~--~~~~~ 663 (1174)
.+|+|+| .+++||+++|+||||||||||||+|+|..+ +.+|+|. ++|++.... . .+ ..++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 6999999 599999999999999999999999999987 5699996 778765321 1 11 23689
Q ss_pred EccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcC
Q 001048 664 CEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVAN 743 (1174)
Q Consensus 664 v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~ 743 (1174)
++|+...++ .++.+++.+.. . .....+.+.++++.+++.+..+..+ ..||||||||++|||+|+.+
T Consensus 92 ~~~~~~~~~-~~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIP-KAVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCc-hHHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhC
Confidence 999877777 48888887642 1 1223456788999999987666654 36999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 744 PSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 744 p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. |++.+.|-.
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~--~~~~~~~~~ 222 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY--GEPGAYGVV 222 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC--CCCCcceee
Confidence 9999999999999999999999999999877999999999974 4555788888873 667765543
No 356
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.98 E-value=1.1e-31 Score=329.46 Aligned_cols=207 Identities=24% Similarity=0.336 Sum_probs=163.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. +++++|+|+||+|++||+++|+|||||||||||++|+|..+ |.+|+|.+++.
T Consensus 4 ~i~~~nls~~~~------------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 67 (552)
T TIGR03719 4 IYTMNRVSKVVP------------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAPG-- 67 (552)
T ss_pred EEEEeeEEEecC------------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC--
Confidence 478899988541 13579999999999999999999999999999999999877 46899998751
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhh-c------------cCCCCCHH--------------------HHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWL-R------------LSTQIDSK--------------------TKAE 699 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~-~------------~~~~~~~~--------------------~~~~ 699 (1174)
..+|||+|++.+++++||+||+.++... + ........ ...+
T Consensus 68 ------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (552)
T TIGR03719 68 ------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDR 141 (552)
T ss_pred ------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHH
Confidence 3589999999888999999999875321 0 00000000 0123
Q ss_pred HHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Q 001048 700 FVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVV 779 (1174)
Q Consensus 700 ~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi 779 (1174)
+++++++.+++.. .++.+ ..|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||
T Consensus 142 ~~~~~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvI 212 (552)
T TIGR03719 142 KLEIAMDALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVV 212 (552)
T ss_pred HHHHHHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEE
Confidence 4566777777753 45544 369999999999999999999999999999999999999999999875 35999
Q ss_pred EEecCCCHHHHHHhcceeEEecCcEEE-EEcCCC
Q 001048 780 CTIHQPSIDIFEAFDDLVLMKNGGRII-YFGPLG 812 (1174)
Q Consensus 780 ~~~H~~~~~~~~~~d~~~~l~~~G~~v-~~G~~~ 812 (1174)
++||+++ .+...+|+++++. +|+++ +.|+.+
T Consensus 213 iisHd~~-~~~~~~d~v~~l~-~g~i~~~~g~~~ 244 (552)
T TIGR03719 213 AVTHDRY-FLDNVAGWILELD-RGRGIPWEGNYS 244 (552)
T ss_pred EEeCCHH-HHHhhcCeEEEEE-CCEEEEecCCHH
Confidence 9999975 5666788888887 58875 678764
No 357
>PLN03130 ABC transporter C family member; Provisional
Probab=99.97 E-value=1.7e-31 Score=357.64 Aligned_cols=204 Identities=25% Similarity=0.371 Sum_probs=167.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEE-EEEEECCee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE-GDIRIGGYP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~-G~i~~~g~~ 651 (1174)
.++++|++|.++.. .++++|+|+|+++++||.++|+||||||||||+++|.|..+ +.+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l---- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSK----------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVI---- 677 (1622)
T ss_pred ceEEEeeEEEccCC----------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEE----
Confidence 58999999976421 13579999999999999999999999999999999999887 568 89875
Q ss_pred CCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCCCCC
Q 001048 652 KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLPGVN 724 (1174)
Q Consensus 652 ~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~~~ 724 (1174)
++.++||+|++.++ +.||+|||.|+.. .+ +++.+++++..+| ++..+|.+|+.|.
T Consensus 678 ------~~~Iayv~Q~p~Lf-ngTIreNI~fg~~------~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~- 739 (1622)
T PLN03130 678 ------RGTVAYVPQVSWIF-NATVRDNILFGSP------FD----PERYERAIDVTALQHDLDLLPGGDLTEIGERGV- 739 (1622)
T ss_pred ------cCeEEEEcCccccC-CCCHHHHHhCCCc------cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCCCC-
Confidence 34689999998875 5799999998732 11 2345555555544 4456899998775
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR-AVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.|||||||||+||||+.++|+|++||||||+||+.+++++.+ .++.+. +|+|+|++||++ +....+|++++|. +|
T Consensus 740 ~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l--~~l~~aD~Ii~L~-~G 815 (1622)
T PLN03130 740 NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQL--HFLSQVDRIILVH-EG 815 (1622)
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCH--hHHHhCCEEEEEe-CC
Confidence 599999999999999999999999999999999999998865 566553 589999999987 4578899999987 59
Q ss_pred EEEEEcCCCcc
Q 001048 804 RIIYFGPLGQH 814 (1174)
Q Consensus 804 ~~v~~G~~~~~ 814 (1174)
++++.|+.++.
T Consensus 816 ~i~e~Gt~~eL 826 (1622)
T PLN03130 816 MIKEEGTYEEL 826 (1622)
T ss_pred EEEEeCCHHHH
Confidence 99999997653
No 358
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=3.2e-31 Score=273.00 Aligned_cols=154 Identities=21% Similarity=0.341 Sum_probs=127.3
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
.+++|+|+||++++||+++|+||||||||||||+|.+ .+|++.++|... ...++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~--~~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLP--KFSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccc--ccccccEEEEhH-----------
Confidence 4679999999999999999999999999999999963 368899987632 112234678776
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhhcC--CcEEEEeCCCC
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELVAN--PSIIFMDEPTS 754 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~~--p~illlDEPts 754 (1174)
.++++.+++... .+... +.||||||||++|||+|+.+ |++++|||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~~-----~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQKL-----STLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 135666777642 44443 46999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 755 GLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 755 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|||+.++..+.+.|++++++|+|||++||+++ ..+.+|+++++.+
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~--~~~~~d~i~~l~~ 163 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLD--VLSSADWIIDFGP 163 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEECC
Confidence 99999999999999999777999999999975 3567898888853
No 359
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=2.3e-31 Score=274.31 Aligned_cols=156 Identities=22% Similarity=0.321 Sum_probs=130.7
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
++.+++++ +++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+ ++|++|+..
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~---------i~~~~q~~~-------- 71 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGIT---------PVYKPQYID-------- 71 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCEE---------EEEEcccCC--------
Confidence 45788885 8999999999999999999999999999887 568999999853 688887532
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCC
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD 757 (1174)
||||||||++|||+|+.+|++++|||||+|||
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcC-CEEEEEecCCCHHHHHHhcceeEEecCcEEEEE--cCCCccchhhhhhhh
Q 001048 758 ARAAATVMRAVKNVVETG-RTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF--GPLGQHSCKVIEYFE 823 (1174)
Q Consensus 758 ~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~--G~~~~~~~~~~~~f~ 823 (1174)
+.++..+.+.++++++++ +|+|++||+++ .+.+.+|+++++.+ +-.++. |++....+.+..|+.
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 170 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEG-EPGVYGIASQPKGTREGINRFLR 170 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcC-CCccceeccCCcchhHHHHHHHH
Confidence 999999999999987764 99999999874 45567888888865 444444 666544444555654
No 360
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=8.2e-31 Score=294.30 Aligned_cols=202 Identities=20% Similarity=0.260 Sum_probs=155.2
Q ss_pred ccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 571 PLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
+..+.+.|++|.+ ..+ ..++++++|-|.+++.+|++||||+|||||||++.|... |..|.|.-.-+
T Consensus 387 ~pvi~~~nv~F~y-----------~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGY-----------SDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSH 452 (614)
T ss_pred CCeEEEeccccCC-----------CCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--ccccccccccc
Confidence 3468889998843 222 279999999999999999999999999999999999887 56787754322
Q ss_pred eCCcccccceEEEEccC--CCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCC
Q 001048 651 PKVQHTFARISGYCEQN--DIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLS 727 (1174)
Q Consensus 651 ~~~~~~~~~~~~~v~Q~--~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LS 727 (1174)
. .+++-.|+ +.+.-+.++-|++.=.. ....+.+.+..++..+||.+ ..+.++ ++||
T Consensus 453 ~--------~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~p~-----~~LS 511 (614)
T KOG0927|consen 453 N--------KLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVVPM-----SQLS 511 (614)
T ss_pred c--------cchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccccch-----hhcc
Confidence 1 12333343 33444667777765321 11234566888999999984 444444 4799
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
+|||+||..|+.+++.|.+|+|||||+|||..+...+.+.|.+. .-+||+++||.. -+-+.++++.+..+++...+
T Consensus 512 ~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 512 DGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred cccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeec
Confidence 99999999999999999999999999999999999999999875 458999999975 46677888988888777777
Q ss_pred EcCC
Q 001048 808 FGPL 811 (1174)
Q Consensus 808 ~G~~ 811 (1174)
.|..
T Consensus 588 ~G~i 591 (614)
T KOG0927|consen 588 DGDI 591 (614)
T ss_pred CccH
Confidence 7763
No 361
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.97 E-value=3e-31 Score=330.02 Aligned_cols=199 Identities=18% Similarity=0.284 Sum_probs=158.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.+++
T Consensus 451 ~i~~~nv~~~~~------------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~--~~~G~i~~~~--- 513 (659)
T TIGR00954 451 GIKFENIPLVTP------------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP--VYGGRLTKPA--- 513 (659)
T ss_pred eEEEEeeEEECC------------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEeecC---
Confidence 589999998542 13479999999999999999999999999999999999876 4579998764
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccc------cccCCCCCCC
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS------LVGLPGVNGL 726 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~------~~~~~~~~~L 726 (1174)
++.++||+|++.+++. |++||+.++........ ....++.++++++.+++.+..++ ..+. ...|
T Consensus 514 -----~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~--~~~L 583 (659)
T TIGR00954 514 -----KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDW--MDVL 583 (659)
T ss_pred -----CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCccccccc--ccCC
Confidence 3568999999987765 99999987532210000 00113456788888888765443 2222 2469
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
|||||||++|||||+++|++++|||||||||+.++..+.+.+++ .|+|+|+++|+++ ..+.+|+++++..+|
T Consensus 584 SgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~~~g 655 (659)
T TIGR00954 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMDGRG 655 (659)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999998876 3899999999975 467899999886443
No 362
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=2.2e-30 Score=267.93 Aligned_cols=227 Identities=23% Similarity=0.323 Sum_probs=187.2
Q ss_pred EEEEeceEEEEeeCCc----ccc------cc-cccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeE
Q 001048 573 TVTFEDLRYYVDIPSA----MRK------NG-FNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII 641 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~----~~~------~~-~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~ 641 (1174)
.+.++||+..+..+.. .+. .+ .......+|+||||++++||.+||+|+||||||||||+|+|.++ |+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--Pt 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--PT 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC--CC
Confidence 4667777766555431 100 01 13345789999999999999999999999999999999999988 67
Q ss_pred EEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCC
Q 001048 642 EGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP 721 (1174)
Q Consensus 642 ~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 721 (1174)
+|+|.++|+-...... .-.+.|.+|.+||+.+-+.+. +...++.+++++++++..+|.+..|.++.
T Consensus 81 ~G~v~v~G~v~~li~l---------g~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pvk-- 146 (249)
T COG1134 81 SGKVKVTGKVAPLIEL---------GAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPVK-- 146 (249)
T ss_pred CceEEEcceEehhhhc---------ccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCchh--
Confidence 9999999974211111 123457899999999977654 45678888999999999999999998874
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
.+|.||+-|++.|.|...+|+||++||-.+--|+.=+++-.+.++++.++++|+|+++|+++ .+.+.||+.+++.
T Consensus 147 ---tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~- 221 (249)
T COG1134 147 ---TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLE- 221 (249)
T ss_pred ---hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEe-
Confidence 69999999999999999999999999999999999999999999999888899999999986 6888899999987
Q ss_pred CcEEEEEcCCCccchhhhhhhhh
Q 001048 802 GGRIIYFGPLGQHSCKVIEYFEC 824 (1174)
Q Consensus 802 ~G~~v~~G~~~~~~~~~~~~f~~ 824 (1174)
+|++.+.|.++ ++.++|+.
T Consensus 222 ~G~i~~~G~~~----~vi~~Y~~ 240 (249)
T COG1134 222 HGQIRMEGSPE----EVIPAYEE 240 (249)
T ss_pred CCEEEEcCCHH----HHHHHHHH
Confidence 59999999984 56666654
No 363
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=8.7e-31 Score=262.95 Aligned_cols=132 Identities=33% Similarity=0.490 Sum_probs=119.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
..+++++||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+ +.++|++|
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~--------~~i~~~~~------------ 70 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGST--------VKIGYFEQ------------ 70 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCe--------EEEEEEcc------------
Confidence 469999999999999999999999999999999999887 56999999984 36799998
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
||+|||||++|||+|+.+|++++|||||+|||+
T Consensus 71 -----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 -----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 759 RAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
.++..+.+.|+++ ++|+|++||+++ ++.+.+|+++++.+ |+
T Consensus 104 ~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~-g~ 144 (144)
T cd03221 104 ESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELED-GK 144 (144)
T ss_pred HHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeC-CC
Confidence 9999999999886 479999999975 55567788888864 54
No 364
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.2e-31 Score=257.89 Aligned_cols=178 Identities=27% Similarity=0.365 Sum_probs=155.5
Q ss_pred cccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc--cccceEEEEccCCCCCCC
Q 001048 596 QTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH--TFARISGYCEQNDIHSPN 673 (1174)
Q Consensus 596 ~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~Q~~~~~~~ 673 (1174)
.+++.++.++||++.+||.+-|.|||||||||||++|+|+.. |.+|+|.++|.++... .+++.+-|+--++.+-+.
T Consensus 12 R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~e 89 (209)
T COG4133 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTE 89 (209)
T ss_pred cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCccchhhHHHHHHHhhccccccch
Confidence 346789999999999999999999999999999999999987 5699999999876542 244556777777888899
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 674 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
+|+.|||.|-..+... ...+.+.++++.+||.+..|.+++ .||-||||||+|||-+++.+++-|||||+
T Consensus 90 LTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLWiLDEP~ 158 (209)
T COG4133 90 LTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPF 158 (209)
T ss_pred hhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCceeecCcc
Confidence 9999999998765432 113457789999999999999986 59999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 754 SGLDARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
++||......+-.++..-+.+|-.||.+||||.
T Consensus 159 taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 159 TALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred cccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 999999999999999988888999999999985
No 365
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=6.5e-30 Score=248.18 Aligned_cols=205 Identities=22% Similarity=0.339 Sum_probs=172.8
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccceEEEEccCCC--CCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFARISGYCEQNDI--HSP 672 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~Q~~~--~~~ 672 (1174)
...+++.|||++++|+.+||+|.||||||||.|+|+|..+ |++|+|++||++..-. .+.+.|-.++||+. +.|
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NP 102 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP 102 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCccccccchHhhhhheeeeecCCccccCh
Confidence 4578999999999999999999999999999999999988 6799999999987432 23467899999974 456
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeC
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 751 (1174)
.+.+.+-+... +++..+.+...+.+++.+.++.+||- +.++.. ++.||-||||||++||||+.+|+|++.||
T Consensus 103 Rl~iGqiLd~P--L~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~-----~~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 103 RLRIGQILDFP--LRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY-----PHMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred hhhhhhHhcch--hhhcccCChHHHHHHHHHHHHHhccCccccccc-----hhhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 66666666554 45566777888899999999999985 334433 34699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 752 PTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
...+||...+.++.++..++.++ |.+-|.++.+.. -+....|+++++. +|++|+.|.+.+
T Consensus 176 Al~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~-EG~vvE~G~t~~ 236 (267)
T COG4167 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMH-EGEVVERGSTAD 236 (267)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEe-cCceeecCChhh
Confidence 99999999999999999999865 999999999875 4667778888886 599999999743
No 366
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.97 E-value=4.8e-30 Score=344.60 Aligned_cols=206 Identities=25% Similarity=0.402 Sum_probs=164.6
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.++ ..++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 636 ~i~~~~~~~~~~-----------~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g--- 699 (1522)
T TIGR00957 636 SITVHNATFTWA-----------RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG--- 699 (1522)
T ss_pred cEEEEEeEEEcC-----------CCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC---
Confidence 589999998653 123479999999999999999999999999999999999887 5689999987
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHH---HHHHcCC-CCcccccccCCCCCCCCH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNE---VLQTIEL-DGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~l~l-~~~~~~~~~~~~~~~LSg 728 (1174)
.++||+|++.++ +.||+||+.|+.. .+.+ +.+.+.+ +.+.++. .+..+|.+|+.+. +|||
T Consensus 700 -------~i~yv~Q~~~l~-~~Ti~eNI~~g~~------~~~~-~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~-~LSG 763 (1522)
T TIGR00957 700 -------SVAYVPQQAWIQ-NDSLRENILFGKA------LNEK-YYQQVLEACALLPDLEILPSGDRTEIGEKGV-NLSG 763 (1522)
T ss_pred -------EEEEEcCCcccc-CCcHHHHhhcCCc------cCHH-HHHHHHHHhCCHHHHHhcCCCCCceecCCCC-CCCH
Confidence 379999998764 6899999998632 1121 1111111 1222222 3345778887654 6999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH--HcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV--ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~--~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
|||||++||||++++|++++||||||+||+.+++.+.+.+.+.. .+|+|+|++||+++ ....+|+++++. +|+++
T Consensus 764 GQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~-~G~i~ 840 (1522)
T TIGR00957 764 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMS-GGKIS 840 (1522)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEec-CCeEE
Confidence 99999999999999999999999999999999999999997532 35899999999975 456689988886 69999
Q ss_pred EEcCCCc
Q 001048 807 YFGPLGQ 813 (1174)
Q Consensus 807 ~~G~~~~ 813 (1174)
+.|+.++
T Consensus 841 ~~g~~~~ 847 (1522)
T TIGR00957 841 EMGSYQE 847 (1522)
T ss_pred eeCCHHH
Confidence 9999754
No 367
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8.4e-30 Score=245.37 Aligned_cols=201 Identities=26% Similarity=0.395 Sum_probs=149.4
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe---eCC-----cccc----cceEEEEc
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY---PKV-----QHTF----ARISGYCE 665 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~-----~~~~----~~~~~~v~ 665 (1174)
...-.+||||++.|||+++|+|+|||||||||+||+++.. |..|+|.+.-. +.+ +... +..-|+|.
T Consensus 18 ~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~--p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~Vh 95 (258)
T COG4107 18 PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT--PDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVH 95 (258)
T ss_pred CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC--CCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceee
Confidence 3467899999999999999999999999999999999988 56899988542 221 1111 22359999
Q ss_pred cCCCCCCCC------CHHHHHH-HHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHH
Q 001048 666 QNDIHSPNI------TVEESIV-FSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAV 738 (1174)
Q Consensus 666 Q~~~~~~~l------Tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~ 738 (1174)
|+|.---.+ .|-|-+. .+++- --..++.+.+.++.++++. +++-.. ++..|||+|||+.|||
T Consensus 96 QnP~DGLRm~VSAG~NiGERlma~G~RH-------YG~iR~~a~~WL~~VEI~~--~RiDD~--PrtFSGGMqQRLQiAR 164 (258)
T COG4107 96 QNPRDGLRMQVSAGGNIGERLMAIGARH-------YGNIRAEAQDWLEEVEIDL--DRIDDL--PRTFSGGMQQRLQIAR 164 (258)
T ss_pred cCccccceeeeccCCccchhHHhhhhhh-------hhhHHHHHHHHHHhcccCc--ccccCc--ccccchHHHHHHHHHH
Confidence 997532222 3333332 11111 1123445667888887753 222222 4679999999999999
Q ss_pred HhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 739 ELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 739 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
-|++.|++.|+||||.|||...+..++++++.+..+ |.+++++|||+ .+.....+.++++++|++++.|-+++
T Consensus 165 nLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl--~VarLla~rlmvmk~g~vve~GLTDr 238 (258)
T COG4107 165 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL--AVARLLADRLMVMKQGQVVESGLTDR 238 (258)
T ss_pred HhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh--HHHHHhhhcceeecCCCEeccccccc
Confidence 999999999999999999999999999999999866 99999999986 45655544444445799999998754
No 368
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.9e-29 Score=312.79 Aligned_cols=204 Identities=22% Similarity=0.282 Sum_probs=155.9
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||+|++||++||+||||||||||||+|+|..+ |.+|+|.++|..
T Consensus 2 i~i~nls~~~-------------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--pd~G~I~~~~~~-- 64 (638)
T PRK10636 2 IVFSSLQIRR-------------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--ADGGSYTFPGNW-- 64 (638)
T ss_pred EEEEEEEEEe-------------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCCC--
Confidence 5678888754 34679999999999999999999999999999999999876 568999998742
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHh-----------------------hcc-CCCCCHHHHHHHHHHHHHHcC
Q 001048 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAW-----------------------LRL-STQIDSKTKAEFVNEVLQTIE 709 (1174)
Q Consensus 654 ~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~-----------------------~~~-~~~~~~~~~~~~~~~~l~~l~ 709 (1174)
.++|++|++... ..|+.+.+.-... +.. .......+..++++++++.+|
T Consensus 65 ------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lg 137 (638)
T PRK10636 65 ------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLG 137 (638)
T ss_pred ------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Confidence 368888864332 3465554431100 000 000001123456888999999
Q ss_pred CC-CcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHH
Q 001048 710 LD-GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSID 788 (1174)
Q Consensus 710 l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~ 788 (1174)
+. +..+..++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||+|||+.. .
T Consensus 138 l~~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~ 208 (638)
T PRK10636 138 FSNEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-F 208 (638)
T ss_pred CCchhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-H
Confidence 96 45666654 69999999999999999999999999999999999999999998875 579999999975 5
Q ss_pred HHHHhcceeEEecCcEEE-EEcCC
Q 001048 789 IFEAFDDLVLMKNGGRII-YFGPL 811 (1174)
Q Consensus 789 ~~~~~d~~~~l~~~G~~v-~~G~~ 811 (1174)
+...+|+++++. +|+++ |.|+.
T Consensus 209 l~~~~d~i~~L~-~G~i~~~~g~~ 231 (638)
T PRK10636 209 LDPIVDKIIHIE-QQSLFEYTGNY 231 (638)
T ss_pred HHHhcCEEEEEe-CCEEEEecCCH
Confidence 666788888886 58886 56654
No 369
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.1e-29 Score=256.73 Aligned_cols=141 Identities=33% Similarity=0.573 Sum_probs=125.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
+.+++++|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q--------- 80 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEELRRRIGYVPQ--------- 80 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCCHHHHHhceEEEee---------
Confidence 469999999999999999999999999999999999877 468999999987543 123456788888
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
||||||||++|||+++.+|++++|||||+|
T Consensus 81 --------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~ 110 (157)
T cd00267 81 --------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSG 110 (157)
T ss_pred --------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 756 LDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
||..++..+.+.++++.++++|++++||+++ .+...+|+++.+.+
T Consensus 111 lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~ 155 (157)
T cd00267 111 LDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKD 155 (157)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 9999999999999998776899999999975 45555688888864
No 370
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=5.6e-29 Score=309.58 Aligned_cols=204 Identities=23% Similarity=0.293 Sum_probs=154.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+|+||+|++||+++|+||||||||||||+|+|..+ +.+|+|.++|..
T Consensus 3 ~l~i~~ls~~~-------------~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~--p~~G~I~~~~~~- 66 (635)
T PRK11147 3 LISIHGAWLSF-------------SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL--LDDGRIIYEQDL- 66 (635)
T ss_pred EEEEeeEEEEe-------------CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEeCCCC-
Confidence 37788888754 23579999999999999999999999999999999999876 568999998631
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHH------------------------------hhcc-CCCCCHHHHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSA------------------------------WLRL-STQIDSKTKAEFV 701 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~------------------------------~~~~-~~~~~~~~~~~~~ 701 (1174)
.++|++|++......+|.+++..+. .+.. .......+..+++
T Consensus 67 -------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 139 (635)
T PRK11147 67 -------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRI 139 (635)
T ss_pred -------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 2467777543333356665542110 0000 0000011224567
Q ss_pred HHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Q 001048 702 NEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCT 781 (1174)
Q Consensus 702 ~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~ 781 (1174)
+++++.+|+.. ++.+ ..|||||||||+|||+|+.+|+||||||||++||+.+...+.+.|+++ +.|||+|
T Consensus 140 ~~~l~~lgl~~--~~~~-----~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvliv 209 (635)
T PRK11147 140 NEVLAQLGLDP--DAAL-----SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFI 209 (635)
T ss_pred HHHHHhCCCCC--CCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEE
Confidence 88999999863 5544 369999999999999999999999999999999999999999999987 3599999
Q ss_pred ecCCCHHHHHHhcceeEEecCcEEE-EEcCC
Q 001048 782 IHQPSIDIFEAFDDLVLMKNGGRII-YFGPL 811 (1174)
Q Consensus 782 ~H~~~~~~~~~~d~~~~l~~~G~~v-~~G~~ 811 (1174)
||++. .+.+.+|+++.+. +|+++ +.|+.
T Consensus 210 sHd~~-~l~~~~d~i~~L~-~G~i~~~~g~~ 238 (635)
T PRK11147 210 SHDRS-FIRNMATRIVDLD-RGKLVSYPGNY 238 (635)
T ss_pred eCCHH-HHHHhcCeEEEEE-CCEEEEecCCH
Confidence 99975 4666788888886 58887 45664
No 371
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=2e-29 Score=307.68 Aligned_cols=180 Identities=26% Similarity=0.276 Sum_probs=148.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEE-----------ECCeeCCcc-----cccceEE
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR-----------IGGYPKVQH-----TFARISG 662 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~-----~~~~~~~ 662 (1174)
..+|++++ .+++||+++|+||||||||||+|+|+|..+ |.+|+|. ++|.++... ..+..++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~ 163 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCccee
Confidence 46999999 999999999999999999999999999877 4589997 889875321 1112345
Q ss_pred EEccCCCCCC---CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHH
Q 001048 663 YCEQNDIHSP---NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVE 739 (1174)
Q Consensus 663 ~v~Q~~~~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~a 739 (1174)
+.+|.....+ ..||+|++... +..++++++++.++|.+..|+.++ +|||||||||+||++
T Consensus 164 ~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~a 226 (590)
T PRK13409 164 HKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAAA 226 (590)
T ss_pred ecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHH
Confidence 5555433333 34999998631 123467889999999888888765 699999999999999
Q ss_pred hhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 740 LVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 740 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|+++ .+...+|+++++.
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~ 285 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAY 285 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 9999999999999999999999999999999988 999999999975 5667788888775
No 372
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.96 E-value=3.5e-29 Score=335.21 Aligned_cols=190 Identities=21% Similarity=0.388 Sum_probs=153.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
+++|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++| .++||+|++.+++ .||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g----------~iayv~Q~~~l~~-~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG----------RISFSPQTSWIMP-GTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC----------EEEEEeCCCccCC-ccHHH
Confidence 579999999999999999999999999999999999887 5689999987 3799999998876 59999
Q ss_pred HHHHHHhhccCCCCCHHHHHH-----HHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 679 SIVFSAWLRLSTQIDSKTKAE-----FVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
||.|+... +.....+ ..++.++. +.+..+|.+|+.+. .|||||||||+||||++.+|++++|||||
T Consensus 506 NI~~g~~~------~~~~~~~~~~~~~L~~~l~~--l~~g~~t~vg~~g~-~LSgGqkqRi~lARAl~~~~~illLDep~ 576 (1490)
T TIGR01271 506 NIIFGLSY------DEYRYTSVIKACQLEEDIAL--FPEKDKTVLGEGGI-TLSGGQRARISLARAVYKDADLYLLDSPF 576 (1490)
T ss_pred HHHhcccc------chHHHHHHHHHHhHHHHHHh--ccccccccccCcCC-CcCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 99987421 1111111 11222222 22334677887654 69999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH-HHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcc
Q 001048 754 SGLDARAAATVMRA-VKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQH 814 (1174)
Q Consensus 754 sgLD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~ 814 (1174)
||||+.++..+.+. ++++. +|+|+|++||+++ ....+|+++++. +|++++.|+.++.
T Consensus 577 saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~--~~~~ad~ii~l~-~g~i~~~g~~~~l 634 (1490)
T TIGR01271 577 THLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE--HLKKADKILLLH-EGVCYFYGTFSEL 634 (1490)
T ss_pred ccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH--HHHhCCEEEEEE-CCEEEEEcCHHHH
Confidence 99999999999985 66664 4899999999975 356689888887 5999999997543
No 373
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=1e-28 Score=312.68 Aligned_cols=206 Identities=24% Similarity=0.393 Sum_probs=171.0
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|.+++-+.. ...+.|+||||+|++|+++||+||-|||||+||.+|.|..+ ..+|+|.++|.
T Consensus 517 ~~i~i~~~sfsW~~~----------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs- 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSE----------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS- 583 (1381)
T ss_pred ceEEEeeeeEecCCC----------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe-
Confidence 357888888864321 12358999999999999999999999999999999999887 57999999885
Q ss_pred CCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------CcccccccCCCCC
Q 001048 652 KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-------GIKDSLVGLPGVN 724 (1174)
Q Consensus 652 ~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~~~ 724 (1174)
++||+|++.++ +.||||||.|+... .+++.+++++.+.|. +...|.+|+.|.
T Consensus 584 ---------iaYv~Q~pWI~-ngTvreNILFG~~~----------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi- 642 (1381)
T KOG0054|consen 584 ---------VAYVPQQPWIQ-NGTVRENILFGSPY----------DEERYDKVIKACALKKDLEILPFGDLTEIGERGI- 642 (1381)
T ss_pred ---------EEEeccccHhh-CCcHHHhhhcCccc----------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCcc-
Confidence 69999999874 67999999998532 134455666665553 456788999887
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
+||||||||+++|||+-+|.+|++||.|.|++|+.+.+++.+..-+-.-++||+|++|||. +....+|.+++|. +|+
T Consensus 643 nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~-~G~ 719 (1381)
T KOG0054|consen 643 NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLK-DGK 719 (1381)
T ss_pred CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEec-CCe
Confidence 5999999999999999999999999999999999999998875554334589999999985 6788899999986 599
Q ss_pred EEEEcCCCcc
Q 001048 805 IIYFGPLGQH 814 (1174)
Q Consensus 805 ~v~~G~~~~~ 814 (1174)
+.+.|+.++.
T Consensus 720 I~~~Gty~el 729 (1381)
T KOG0054|consen 720 IVESGTYEEL 729 (1381)
T ss_pred EecccCHHHH
Confidence 9999998654
No 374
>PTZ00243 ABC transporter; Provisional
Probab=99.96 E-value=2.2e-28 Score=327.49 Aligned_cols=192 Identities=28% Similarity=0.378 Sum_probs=149.3
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++ +.++|++|++.++ +.||
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~----------~~i~yv~Q~~~l~-~~Tv 737 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE----------RSIAYVPQQAWIM-NATV 737 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC----------CeEEEEeCCCccC-CCcH
Confidence 34679999999999999999999999999999999999887 568999763 4589999998775 6799
Q ss_pred HHHHHHHHhhccCCCCCHHHHH-----HHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKA-----EFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 751 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 751 (1174)
+||+.|+... +.+... ...++.++.+ .+..++.+|..+ ..|||||||||+|||||+.+|++++|||
T Consensus 738 ~enI~~~~~~------~~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~~g-~~LSGGQkqRvaLARAl~~~p~illLDE 808 (1560)
T PTZ00243 738 RGNILFFDEE------DAARLADAVRVSQLEADLAQL--GGGLETEIGEKG-VNLSGGQKARVSLARAVYANRDVYLLDD 808 (1560)
T ss_pred HHHHHcCChh------hHHHHHHHHHHhhhHHHHHHh--hccchHHhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999985211 111101 1122233333 122345666554 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 752 PTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
|||+||+.++..+++.+.....+|+|+|++||+++ ..+.+|++++|. +|++++.|+.++
T Consensus 809 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~l~-~G~i~~~G~~~~ 867 (1560)
T PTZ00243 809 PLSALDAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADYVVALG-DGRVEFSGSSAD 867 (1560)
T ss_pred ccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEE-CCEEEEecCHHH
Confidence 99999999999988754322235899999999874 457789998887 599999999754
No 375
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=4.9e-28 Score=287.02 Aligned_cols=204 Identities=26% Similarity=0.359 Sum_probs=158.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++.+|++..+ +.+++++|+|+++.+|+.+||+|+||||||||||+|+|... +.+|+|...+.
T Consensus 3 ~i~~~~ls~~~-------------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~~-- 65 (530)
T COG0488 3 MITLENLSLAY-------------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPKG-- 65 (530)
T ss_pred eEEEeeeEEee-------------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecCC--
Confidence 46777887753 35789999999999999999999999999999999999887 56899987532
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhc-------------cCCC--------------CCHHHHHHHHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLR-------------LSTQ--------------IDSKTKAEFVNEVL 705 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~-------------~~~~--------------~~~~~~~~~~~~~l 705 (1174)
-.++|++|++...+..||.+.+.-+..-. .... .+.-+.+.+++.++
T Consensus 66 ------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L 139 (530)
T COG0488 66 ------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEAL 139 (530)
T ss_pred ------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 25799999999988899999887653100 0000 00011234667788
Q ss_pred HHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 001048 706 QTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQP 785 (1174)
Q Consensus 706 ~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 785 (1174)
..+|+.+. ++.++ +||||||.||++|++|+.+|++|+|||||++||..+..-+.+.|++. +| |+|+||||-
T Consensus 140 ~gLg~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR 210 (530)
T COG0488 140 LGLGFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDR 210 (530)
T ss_pred hcCCCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCH
Confidence 88888776 67665 69999999999999999999999999999999999999999999864 46 999999983
Q ss_pred CHHHHHHhcceeEEecCcEE-EEEcC
Q 001048 786 SIDIFEAFDDLVLMKNGGRI-IYFGP 810 (1174)
Q Consensus 786 ~~~~~~~~d~~~~l~~~G~~-v~~G~ 810 (1174)
.-+-+.+++++-+.. |++ .|.|.
T Consensus 211 -~FLd~V~t~I~~ld~-g~l~~y~Gn 234 (530)
T COG0488 211 -YFLDNVATHILELDR-GKLTPYKGN 234 (530)
T ss_pred -HHHHHHhhheEEecC-CceeEecCC
Confidence 234455666666654 555 45554
No 376
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=1.2e-27 Score=259.23 Aligned_cols=198 Identities=21% Similarity=0.290 Sum_probs=131.7
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHH-HHHhC--CCC--C--CeEEEEEEECCe-eCCccccc-ceEEEEccCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLM-DVLSG--RKT--G--GIIEGDIRIGGY-PKVQHTFA-RISGYCEQND 668 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl-~~l~g--~~~--~--~~~~G~i~~~g~-~~~~~~~~-~~~~~v~Q~~ 668 (1174)
+..+|+||||++++||+++|+||||||||||+ ..+.. ... . .+..+. .+... .......+ ...++..|++
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ-FLGQMDKPDVDSIEGLSPAIAIDQK 85 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhh-hhcccCccccccccCCCceEEecCC
Confidence 46799999999999999999999999999995 44431 000 0 000000 00000 00000111 1233434433
Q ss_pred C--CCCCCCHH---HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHHhhc
Q 001048 669 I--HSPNITVE---ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQRKRLTIAVELVA 742 (1174)
Q Consensus 669 ~--~~~~lTv~---e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~al~~ 742 (1174)
. ..+..+|. |...+...+. ......++ .+.++.+++.+ ..+... ..||||||||++|||+|+.
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSA-----PTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCcc-----CcCCHHHHHHHHHHHHHHh
Confidence 2 23444544 2222221111 11112223 46788899875 355543 4699999999999999999
Q ss_pred CC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEc
Q 001048 743 NP--SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFG 809 (1174)
Q Consensus 743 ~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G 809 (1174)
+| ++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ ..+.+|+++++. ++|+++++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~--~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED--TIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH--HHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 599999999999999999999999999877999999999974 357888888882 468999876
No 377
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.95 E-value=6.2e-27 Score=257.29 Aligned_cols=168 Identities=23% Similarity=0.343 Sum_probs=131.3
Q ss_pred ceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHH
Q 001048 605 ITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSA 684 (1174)
Q Consensus 605 vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~ 684 (1174)
=.+++..||+++++||||-||||+.++|+|..+ |.+|+ .. .-.++|=||--.--...||++-+.-..
T Consensus 360 ~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~~~ 426 (591)
T COG1245 360 EEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRSAI 426 (591)
T ss_pred cCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Cc-------cceEeecceeecCCCCCcHHHHHHHhh
Confidence 346788899999999999999999999999887 44665 11 124677788644446789999876543
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHH
Q 001048 685 WLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATV 764 (1174)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i 764 (1174)
..+.. ......++++-+.|++..|..+. +|||||.|||+||.+|.+++++.+||||++-||.+.+..+
T Consensus 427 ~~~~~-------~s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~v 494 (591)
T COG1245 427 RSAFG-------SSYFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494 (591)
T ss_pred hhhcc-------cchhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHH
Confidence 32111 11234577888889888888764 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCEEEEEecCCCHHHHHHh-cceeEE
Q 001048 765 MRAVKNVVET-GRTVVCTIHQPSIDIFEAF-DDLVLM 799 (1174)
Q Consensus 765 ~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~-d~~~~l 799 (1174)
.+.|++..++ ++|.+++-||.- +..+. |++++.
T Consensus 495 akvIRR~~e~~~kta~vVdHDi~--~~dyvsDr~ivF 529 (591)
T COG1245 495 AKVIRRFIENNEKTALVVDHDIY--MIDYVSDRLIVF 529 (591)
T ss_pred HHHHHHHHhhcCceEEEEeccee--hhhhhhceEEEE
Confidence 9999999864 899999999864 34443 444444
No 378
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=3.6e-28 Score=243.11 Aligned_cols=134 Identities=32% Similarity=0.558 Sum_probs=119.0
Q ss_pred cccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCCHHH
Q 001048 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 602 L~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999887 569999999999865 345678999999999999999999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCC
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 754 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 754 (1174)
| ...++++++++.+++.+..++.++.+. ..||||||||++||+||+++|++++|||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQRA-SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSCG-GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------ccccccccccccccccccccccccccc-chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 223457889999999888888886544 5799999999999999999999999999996
No 379
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=9e-28 Score=230.89 Aligned_cols=191 Identities=24% Similarity=0.301 Sum_probs=152.9
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee--CC--c-------ccccceEEEEcc
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP--KV--Q-------HTFARISGYCEQ 666 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~--~~--~-------~~~~~~~~~v~Q 666 (1174)
..++++|+||+++.||++++=||||+|||||||+|-|.+. +.+|+|.+.... ++ . .-.++.+|||.|
T Consensus 23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~--~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQ 100 (235)
T COG4778 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL--PDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQ 100 (235)
T ss_pred EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC--CCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHH
Confidence 4589999999999999999999999999999999999876 569999985432 11 1 113456899999
Q ss_pred CCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcE
Q 001048 667 NDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSI 746 (1174)
Q Consensus 667 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~i 746 (1174)
.-...|..+..|-++-...- .+.+.+...+++.+++..+++.+-.=.+ + +...||||||||.|||.++.+-+|
T Consensus 101 FLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~L---a-PaTFSGGEqQRVNIaRgfivd~pI 173 (235)
T COG4778 101 FLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSL---A-PATFSGGEQQRVNIARGFIVDYPI 173 (235)
T ss_pred HHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcC---C-CcccCCchheehhhhhhhhccCce
Confidence 87778887777766554432 2456677778889999999987543222 1 246999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHH-hcceeEE
Q 001048 747 IFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEA-FDDLVLM 799 (1174)
Q Consensus 747 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l 799 (1174)
|+|||||+.||..++..++++|++-+.+|..+|=+-|| .++.+. +|+++-+
T Consensus 174 LLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD--eevre~vadR~~~~ 225 (235)
T COG4778 174 LLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD--EEVREAVADRLLDV 225 (235)
T ss_pred EEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc--HHHHHHHhhheeec
Confidence 99999999999999999999999988889999999997 355554 4555544
No 380
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=3.4e-27 Score=257.48 Aligned_cols=197 Identities=25% Similarity=0.326 Sum_probs=149.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHh--------CCCC--C---CeEE------EEEEECCeeCCccc---
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS--------GRKT--G---GIIE------GDIRIGGYPKVQHT--- 656 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~--------g~~~--~---~~~~------G~i~~~g~~~~~~~--- 656 (1174)
..-|+|||.+|+.|++++|.|+||||||||++.+. +... + .... --|.+|..|+....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 46799999999999999999999999999998552 1100 0 0011 23666766643210
Q ss_pred ----------ccc----------------eEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC
Q 001048 657 ----------FAR----------------ISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL 710 (1174)
Q Consensus 657 ----------~~~----------------~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 710 (1174)
.|+ .+.|..++......+||.|++.|...++ ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 000 1345555555567899999999876432 12346778999999
Q ss_pred CC-cccccccCCCCCCCCHHHHHHHHHHHHhhcC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 711 DG-IKDSLVGLPGVNGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 711 ~~-~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~---p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
.+ ..+... +.||||||||++||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|+|+++|+++
T Consensus 159 ~~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 76 344443 46999999999999999996 7999999999999999999999999999888999999999874
Q ss_pred HHHHHHhcceeEEe-----cCcEEEEEcCC
Q 001048 787 IDIFEAFDDLVLMK-----NGGRIIYFGPL 811 (1174)
Q Consensus 787 ~~~~~~~d~~~~l~-----~~G~~v~~G~~ 811 (1174)
..+.+|+++.+. ++|++++.|++
T Consensus 234 --~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 --VIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred --HHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 456789888883 57999999974
No 381
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=6.2e-28 Score=299.52 Aligned_cols=216 Identities=19% Similarity=0.211 Sum_probs=146.9
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC-CCeEEEEEEECCe
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT-GGIIEGDIRIGGY 650 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~-~~~~~G~i~~~g~ 650 (1174)
-.+.++|+++.+. ++.+|+|+||+|.+||.+||+|||||||||||++|+|... +.|.+|+|.+.++
T Consensus 176 ~~I~i~nls~~y~-------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q 242 (718)
T PLN03073 176 KDIHMENFSISVG-------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQ 242 (718)
T ss_pred eeEEEceEEEEeC-------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEec
Confidence 3589999998652 3469999999999999999999999999999999999642 1234567765433
Q ss_pred eCCccc-----------------ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC---------------CCCHHHHH
Q 001048 651 PKVQHT-----------------FARISGYCEQNDIHSPNITVEESIVFSAWLRLST---------------QIDSKTKA 698 (1174)
Q Consensus 651 ~~~~~~-----------------~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~---------------~~~~~~~~ 698 (1174)
...... .++.+++++|++.+... ++.++.........+. ..+....+
T Consensus 243 ~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 321 (718)
T PLN03073 243 EVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAE 321 (718)
T ss_pred cCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHH
Confidence 210000 01223455554322111 1111110000000000 00011234
Q ss_pred HHHHHHHHHcCCC-CcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 001048 699 EFVNEVLQTIELD-GIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT 777 (1174)
Q Consensus 699 ~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 777 (1174)
+++.++++.+|+. +..++.+ ..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|
T Consensus 322 ~r~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~t 393 (718)
T PLN03073 322 ARAASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKT 393 (718)
T ss_pred HHHHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCE
Confidence 4566777788875 3345554 369999999999999999999999999999999999999999999886 689
Q ss_pred EEEEecCCCHHHHHHhcceeEEecCcEEE-EEcCC
Q 001048 778 VVCTIHQPSIDIFEAFDDLVLMKNGGRII-YFGPL 811 (1174)
Q Consensus 778 vi~~~H~~~~~~~~~~d~~~~l~~~G~~v-~~G~~ 811 (1174)
+|++||+.. .+.+.+|+++++. +|+++ +.|+.
T Consensus 394 viivsHd~~-~l~~~~d~i~~l~-~g~i~~~~g~~ 426 (718)
T PLN03073 394 FIVVSHARE-FLNTVVTDILHLH-GQKLVTYKGDY 426 (718)
T ss_pred EEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCCCH
Confidence 999999964 4556688888887 58886 66664
No 382
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.94 E-value=1e-26 Score=245.89 Aligned_cols=168 Identities=21% Similarity=0.251 Sum_probs=130.5
Q ss_pred ccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC-------CeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCC
Q 001048 603 SDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG-------GIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 603 ~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~-------~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
+++++++++| +++|+||||||||||+++|+|...+ +...|++.++|++......++.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999986431 122356777777654333456799999988665
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhh----cCCcEEEEeC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELV----ANPSIIFMDE 751 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~----~~p~illlDE 751 (1174)
|+ .. ..++++++++. .+..++.+ ..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~--~~---------~~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YS--II---------SQGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------ee--EE---------ehhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 11 00 02345666665 34445543 469999999999999997 4679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 752 PTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
||+|||+..+..+.+.|+++++ +.|||++||+++ ..+.+|+++.+...+
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~~~~~~ 192 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYGVTMQE 192 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEEEEecc
Confidence 9999999999999999999865 789999999874 457899999887654
No 383
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=2.7e-26 Score=221.71 Aligned_cols=197 Identities=25% Similarity=0.435 Sum_probs=165.5
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCCH
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+-|-.+|+++..||++-++|||||||||||..++|..+. +|+|.++|.+... ....|..+|..|+..-.+.+.|
T Consensus 13 tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~---sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV 89 (248)
T COG4138 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPV 89 (248)
T ss_pred ccccccccccccceEEEEECCCCccHHHHHHHHhCCCCC---CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhh
Confidence 346789999999999999999999999999999998763 7999999998753 2355667899988777778899
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhc-----CC--cEEEE
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA-----NP--SIIFM 749 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~-----~p--~illl 749 (1174)
...+.+. . +.+++...++++.+.+++.+...+.+ +.|||||=|||-+|-..++ || ++|+|
T Consensus 90 ~~YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLll 156 (248)
T COG4138 90 WHYLTLH----Q----PDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLL 156 (248)
T ss_pred hhhhhhc----C----chHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEe
Confidence 8887653 2 23556677888888888876655543 4799999999999987765 45 59999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcc
Q 001048 750 DEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQH 814 (1174)
Q Consensus 750 DEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~ 814 (1174)
|||.++||...+..+-.+|.+++.+|.+||++.||++ ...+.+|++.++.+ |++...|..++.
T Consensus 157 DEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~r-G~l~~~G~~~eV 219 (248)
T COG4138 157 DEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKR-GKLLASGRREEV 219 (248)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhc-CeEEeecchhhh
Confidence 9999999999999999999999999999999999998 57788899999975 899999998663
No 384
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.91 E-value=2.3e-24 Score=252.96 Aligned_cols=198 Identities=25% Similarity=0.341 Sum_probs=156.3
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|++...+ .++..|++.|+.++|||.+.|.||||||||||+|+|+|+-+.+ +|+|..-
T Consensus 391 ~~i~~~nl~l~~p------------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g--~G~I~~P--- 453 (604)
T COG4178 391 HGITLENLSLRTP------------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG--SGRISMP--- 453 (604)
T ss_pred ceeEEeeeeEECC------------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC--CCceecC---
Confidence 5799999987532 2358999999999999999999999999999999999998855 5776542
Q ss_pred CCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccC-CCCCCCCHHH
Q 001048 652 KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL-PGVNGLSTEQ 730 (1174)
Q Consensus 652 ~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~LSgGq 730 (1174)
....+-|+||.|.+ |..|.||-|.|.... ... ..+.+.++|.++||.+..++.-+. +-.+.||+||
T Consensus 454 -----~~~~~lflpQ~PY~-p~GtLre~l~YP~~~---~~~----~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GE 520 (604)
T COG4178 454 -----ADSALLFLPQRPYL-PQGTLREALCYPNAA---PDF----SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGE 520 (604)
T ss_pred -----CCCceEEecCCCCC-CCccHHHHHhCCCCC---CCC----ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhH
Confidence 11236899999876 667999999875321 112 234577889999998887665432 2234699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
||||++||.|+++|++++|||.||+||+.++..+.+.+++-. .+.|||-+.|++. +....++.+-+.++
T Consensus 521 qQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~~~ 589 (604)
T COG4178 521 QQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELLDD 589 (604)
T ss_pred HHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeeccc
Confidence 999999999999999999999999999999999999998743 3899999999864 45555665555443
No 385
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.8e-23 Score=227.14 Aligned_cols=193 Identities=21% Similarity=0.314 Sum_probs=145.8
Q ss_pred ccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 571 PLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
|..+.++||+|.++ +.++++++++|-|.--..+||+||||.||||||++|.|... |..|+.+-|
T Consensus 584 PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~RKn-- 647 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELRKN-- 647 (807)
T ss_pred CCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhhcc--
Confidence 44688889988432 35689999999999999999999999999999999999887 456765432
Q ss_pred eCCcccccceEEEEccCC--CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 651 PKVQHTFARISGYCEQND--IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 651 ~~~~~~~~~~~~~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
.+-.||+..|+. .+-..-|..|.|.-.. ..+. +.+...+-.+||...++|+- ...|||
T Consensus 648 ------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlpy----q~ARK~LG~fGL~sHAHTik----ikdLSG 707 (807)
T KOG0066|consen 648 ------HRLRIGWFDQHANEALNGEETPVEYLQRKF------NLPY----QEARKQLGTFGLASHAHTIK----IKDLSG 707 (807)
T ss_pred ------ceeeeechhhhhHHhhccccCHHHHHHHhc------CCCh----HHHHHHhhhhhhhhccceEe----eeecCC
Confidence 233578888763 3444556666654221 1222 22456788889988888863 357999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 729 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
|||-||++|.--+..|+||||||||++||..+...+.++|++. .-.||+++||-+ -+.+--|.+.++.+.|
T Consensus 708 GQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR-Li~eT~C~LwVvE~Q~ 778 (807)
T KOG0066|consen 708 GQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER-LIVETDCNLWVVENQG 778 (807)
T ss_pred cchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc-eeeecCceEEEEccCC
Confidence 9999999999999999999999999999999999999999876 457899999854 2444445555555443
No 386
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=8e-23 Score=229.13 Aligned_cols=198 Identities=21% Similarity=0.265 Sum_probs=145.8
Q ss_pred ccEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 571 PLTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
+..+.+.+|++.++ .++-+++.+++..++.-+-.+++|+||+||||++|++.|... |..|.+.+.+
T Consensus 360 ~p~l~i~~V~f~y~-----------p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYT-----------PSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP- 425 (582)
T ss_pred CCeeEEEeeeccCC-----------CcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-
Confidence 44678888876432 222268999999999999999999999999999999999665 4567665543
Q ss_pred eCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHH
Q 001048 651 PKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 651 ~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgG 729 (1174)
+.+++|-.|...-+..+.|.+- .+-...+ ++.. ++.+++.+..+||+.- +... ..+||||
T Consensus 426 -------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~--pG~~----~ee~r~hl~~~Gl~g~la~~s-----i~~LSGG 486 (582)
T KOG0062|consen 426 -------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF--PGKT----EEEIRRHLGSFGLSGELALQS-----IASLSGG 486 (582)
T ss_pred -------cceecchhHhhhhHHHHHhHHH-HHHHHhC--CCCC----HHHHHHHHHhcCCCchhhhcc-----ccccCCc
Confidence 4568999998665555555443 2322222 2222 3346677888999743 2222 3479999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHH-HhcceeEEecCcEEEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFE-AFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~-~~d~~~~l~~~G~~v~ 807 (1174)
||-||++|.....+|.+|+|||||+.||-.+-..+.++|+.. +-.||+|||+. +..+ .|+.+.++ ++|++.-
T Consensus 487 QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~--~fi~~~c~E~Wvv-e~g~vt~ 559 (582)
T KOG0062|consen 487 QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDE--EFISSLCKELWVV-EDGKVTP 559 (582)
T ss_pred chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcH--HHHhhcCceeEEE-cCCcEEe
Confidence 999999999999999999999999999999999999999876 45789999974 4444 45555555 4677753
No 387
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=9.4e-25 Score=231.85 Aligned_cols=141 Identities=23% Similarity=0.346 Sum_probs=119.5
Q ss_pred cccchhhhcCC-CCCccHHH----------HHHHhhhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhH
Q 001048 2 EVIKLEKLAGI-FPDPDVDA----------YMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 2 ~~~~~~~~~~~-~~~~~v~~----------~~~~~~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
++++.|+..|. ++|+|.+. -++.+..++.|++++|.++|+.+||++.+|..-.+ |||||||||+
T Consensus 77 ~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~q-----LSGGQKQRVa 151 (339)
T COG1135 77 ELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQ-----LSGGQKQRVA 151 (339)
T ss_pred HHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchh-----cCcchhhHHH
Confidence 56788888887 45566652 23334466889999999999999999999987654 9999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
|||||+.+|+||++|||||+|||.+...|.+.|+++.++.|.|+++-.|+ ..-+=+.|||+.||++|+++++|+..+
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHE-m~Vvk~ic~rVavm~~G~lvE~G~v~~ 228 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHE-MEVVKRICDRVAVLDQGRLVEEGTVSE 228 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHhhhheEeeCCEEEEeccHHH
Confidence 99999999999999999999999999999999999998889998875543 334445599999999999999998754
No 388
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=3.4e-24 Score=236.31 Aligned_cols=188 Identities=15% Similarity=0.213 Sum_probs=129.0
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCC----------------CCCC----eEEE--EEEECCee----
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR----------------KTGG----IIEG--DIRIGGYP---- 651 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~----------------~~~~----~~~G--~i~~~g~~---- 651 (1174)
++.++++++ |++++|+||||||||||+++|++. ...+ ..++ +|.+++.+
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 456888887 789999999999999999999832 1111 0112 44555532
Q ss_pred CC--cccccceEEEEccCCCCCC-CCCHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 652 KV--QHTFARISGYCEQNDIHSP-NITVEESIVFSAWLRLSTQIDS-KTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 652 ~~--~~~~~~~~~~v~Q~~~~~~-~lTv~e~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ....++.+++++|+..+++ ..|..|...+............ .....++ .+.+++.+..+... +.||
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i---~~l~~l~~~~~~~~-----~~lS 160 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKI---NSLTNMKQDEQQEM-----QQLS 160 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCch---HHhhhccccccccc-----cccC
Confidence 11 1234566899998877766 4677776665544322211000 0001122 23334443334433 4699
Q ss_pred HHHHHHHHHHHHhhc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 728 TEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 728 gGqrqRv~ia~al~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
||||||++|||+|+. +|+++++||||+|||+.++..+.+.|+++++ ++|+|+++|++ ++.+.+|+++.+.-
T Consensus 161 ~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~~ 235 (243)
T cd03272 161 GGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVKF 235 (243)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEEE
Confidence 999999999999973 5899999999999999999999999999865 78999999974 67788999988863
No 389
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.91 E-value=3.7e-24 Score=227.89 Aligned_cols=168 Identities=20% Similarity=0.244 Sum_probs=125.0
Q ss_pred ceeEEeCCeEEEEecCCCCCHHHHHHHHh----CCCCCCeEEEEEEECCeeCCcccccceEEEEccCC-----CCCCCCC
Q 001048 605 ITGTFRPGILTALMGVSGAGKTTLMDVLS----GRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQND-----IHSPNIT 675 (1174)
Q Consensus 605 vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~----g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~-----~~~~~lT 675 (1174)
.++++.+| +++|+||||||||||+++|. |...+ ..|.+..+...+.....+..+++++|++ .....+|
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~--~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPP--NSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCc--ccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 44567778 99999999999999999995 76552 3454442222222233445789999987 2234458
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH------HHHHHHhhcCCcEEEE
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR------LTIAVELVANPSIIFM 749 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR------v~ia~al~~~p~illl 749 (1174)
+.||+.+.. . +.+++.+ +.. ++.||+||||| ++||++++.+|+++++
T Consensus 93 ~~~~~~~~~---------~----~~~~~~~---------~~~-----~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFCH---------Q----GESNWPL---------LDM-----RGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeeec---------h----HHHHHHH---------hcC-----ccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 888875421 1 1122222 222 24699999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 750 DEPTSGLDARAAA-TVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 750 DEPtsgLD~~~~~-~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
||||++||+.++. .+.+.|++++++ |+|+|++||++ +..+.+|+++.+.++|+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~--~~~~~~d~i~~l~~~~~ 200 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE--ELVDAADHIYRVEKDGR 200 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH--HHHhhCCEEEEEeeCCC
Confidence 9999999999999 999999999876 89999999986 45678999999988774
No 390
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=7e-24 Score=214.32 Aligned_cols=139 Identities=24% Similarity=0.378 Sum_probs=116.8
Q ss_pred cccchhhhcCC-------CCCccHHHHHHHhh-----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchh
Q 001048 2 EVIKLEKLAGI-------FPDPDVDAYMKAIS-----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 2 ~~~~~~~~~~~-------~~~~~v~~~~~~~~-----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
++.+.|+..|. +||.+|++.+...+ ..+.|-+++..++|+.+||.+.+|..-+. |||||||||
T Consensus 71 ~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~q-----LSGGQqQRV 145 (240)
T COG1126 71 DILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQ-----LSGGQQQRV 145 (240)
T ss_pred hHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccc-----cCcHHHHHH
Confidence 35567777775 77888886655443 44566666778899999999999997654 999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcc
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLS 147 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~ 147 (1174)
+|||||+-+|+|+++|||||+|||....+|.++++++|+ .|.|.||..| -..=.-+-+|||+.|++|++++.|+++
T Consensus 146 AIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTH-EM~FAr~VadrviFmd~G~iie~g~p~ 221 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTH-EMGFAREVADRVIFMDQGKIIEEGPPE 221 (240)
T ss_pred HHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEec-hhHHHHHhhheEEEeeCCEEEEecCHH
Confidence 999999999999999999999999999999999999997 5899888766 333345669999999999999999764
No 391
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.90 E-value=3.3e-24 Score=236.98 Aligned_cols=179 Identities=17% Similarity=0.252 Sum_probs=132.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe-eCCc-----ccccceEEEEccCC---------CCCCCCCH
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY-PKVQ-----HTFARISGYCEQND---------IHSPNITV 676 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~-~~~~-----~~~~~~~~~v~Q~~---------~~~~~lTv 676 (1174)
..+++|+||||||||||+++|++...+ ...|++...|. ++.. ......+++++|++ .+.+.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~-~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGI-TNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc-cccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 459999999999999999999997642 12467777665 3211 11234688999984 34567899
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC--------------------cccccccCCCCCCCCHHHHHHHHH
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG--------------------IKDSLVGLPGVNGLSTEQRKRLTI 736 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--------------------~~~~~~~~~~~~~LSgGqrqRv~i 736 (1174)
.+++..+...+.... .+....+.+.+.++.+++.. ..+.. +..||||||||++|
T Consensus 104 ~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~-----~~~lS~G~~qr~~l 177 (251)
T cd03273 104 TRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKES-----LTELSGGQRSLVAL 177 (251)
T ss_pred EEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhccc-----ccccCHHHHHHHHH
Confidence 988865432211000 12233467888999999851 11222 34799999999999
Q ss_pred HHHhh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 737 AVELV----ANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 737 a~al~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
|++|+ .+|+++++||||+|||+.++..+.+.|+++. +|.|+|++||++ ++.+.+|+++-+.
T Consensus 178 a~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 178 SLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 99998 5789999999999999999999999999985 489999999984 6788899887775
No 392
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.90 E-value=2.7e-25 Score=237.60 Aligned_cols=180 Identities=18% Similarity=0.197 Sum_probs=132.6
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+++.+++++++ ++++|+||||||||||+++|.- ++|.+.. ...++.+++++|+..+.+.+|+
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~------------~~G~~~~-~~~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF------------VFGFRAS-KMRQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH------------HhccCHH-HhhhhhHHHHhcCCCCCCCCce
Confidence 35678999987 8999999999999999999961 2232211 1112457888998888888899
Q ss_pred HHHHHHHHhhccC-----CCCCHHHHHH--HHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhc----CCc
Q 001048 677 EESIVFSAWLRLS-----TQIDSKTKAE--FVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA----NPS 745 (1174)
Q Consensus 677 ~e~l~~~~~~~~~-----~~~~~~~~~~--~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~----~p~ 745 (1174)
+|++.+....... .+...+.... ..+++++.+++.+..++.++ .||+|||||++||++++. +|+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~-----~lS~G~~~r~~la~al~~~~~~~p~ 151 (212)
T cd03274 77 CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS-----NLSGGEKTLSSLALVFALHHYKPTP 151 (212)
T ss_pred EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh-----hcCHHHHHHHHHHHHHHhcccCCCC
Confidence 8877665432100 0111111000 12455667777776676653 699999999999999974 579
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 746 IIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 746 illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
+++|||||+|||+.++..+.+.|++++ ++.|+|++||++ ++.+.+|+++++...
T Consensus 152 ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~--~~~~~~d~v~~~~~~ 205 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRN--NMFELADRLVGIYKT 205 (212)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcH--HHHHhCCEEEEEEec
Confidence 999999999999999999999999985 467899999984 678899999998753
No 393
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.89 E-value=5.2e-24 Score=230.18 Aligned_cols=206 Identities=22% Similarity=0.278 Sum_probs=158.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
+++++|++|.+.. ..-=+..||++|++||++-|+|.|||||||++++|.|+.. |.+|+|++||+|+
T Consensus 322 ~lelrnvrfay~~------------~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~--PqsG~I~ldg~pV 387 (546)
T COG4615 322 TLELRNVRFAYQD------------NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPV 387 (546)
T ss_pred ceeeeeeeeccCc------------ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC--CCCCceeECCccC
Confidence 5899999986532 1134788999999999999999999999999999999988 5699999999998
Q ss_pred Ccc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 653 VQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
+.. ++|+..+-|+-|-.+|+.+- .+... ...+.++..++.+.+.+...-.-|+-....||.|
T Consensus 388 ~~e~ledYR~LfSavFsDyhLF~~ll------------~~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStG 452 (546)
T COG4615 388 SAEQLEDYRKLFSAVFSDYHLFDQLL------------GPEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTG 452 (546)
T ss_pred CCCCHHHHHHHHHHHhhhHhhhHhhh------------CCccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccc
Confidence 653 45565666666555544321 11111 1234566777777776654333333233469999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK-NVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~-~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
||||+++-.||+-+.+|+++||=.+--||.-++.+.+.+- .++++|+||+.+|||- .-+..+|+.+.+. +|++++.
T Consensus 453 QkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~-~G~~~e~ 529 (546)
T COG4615 453 QKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMR-NGQLSEL 529 (546)
T ss_pred hHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHh-cCceeec
Confidence 9999999999999999999999999999999999887554 5677899999999984 4588889988886 5999986
Q ss_pred cC
Q 001048 809 GP 810 (1174)
Q Consensus 809 G~ 810 (1174)
-+
T Consensus 530 tg 531 (546)
T COG4615 530 TG 531 (546)
T ss_pred cc
Confidence 54
No 394
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.89 E-value=2.8e-23 Score=223.54 Aligned_cols=180 Identities=22% Similarity=0.132 Sum_probs=116.9
Q ss_pred ccceeEEe-CCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECC--eeCCcccccceEEEEccCCCCCCCCCHHHH
Q 001048 603 SDITGTFR-PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG--YPKVQHTFARISGYCEQNDIHSPNITVEES 679 (1174)
Q Consensus 603 ~~vs~~i~-~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g--~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~ 679 (1174)
++++|... +|++++|+||||||||||+++|++...+ +..+....+. ..+........+++++|++.... ++...
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG-KTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERS 94 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec-CccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEe
Confidence 45666543 5899999999999999999999964321 2223333221 01111233456888998763311 22111
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhc----------CCcEEEE
Q 001048 680 IVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA----------NPSIIFM 749 (1174)
Q Consensus 680 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~----------~p~illl 749 (1174)
. ..+.++..+.+ .++..++.+..+..+ ..||||||||++||++|+. +|++++|
T Consensus 95 ~----------gl~~~~~~~~~--~l~~g~l~~~l~~~~-----~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lll 157 (213)
T cd03279 95 R----------GLDYDQFTRIV--LLPQGEFDRFLARPV-----STLSGGETFLASLSLALALSEVLQNRGGARLEALFI 157 (213)
T ss_pred c----------CCCHHHHHHhh--hhhhcchHHHhcCCc-----cccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEE
Confidence 1 22222111111 123333434344433 4699999999999999985 6789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 750 DEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 750 DEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
||||+|||+.++..+.+.|++++++|+|+|++||+++ .+...+|+++++.++|
T Consensus 158 DEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 158 DEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 9999999999999999999999877999999999874 3444455666655443
No 395
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.2e-21 Score=230.01 Aligned_cols=127 Identities=27% Similarity=0.432 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCC---cEEEE
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANP---SIIFM 749 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p---~illl 749 (1174)
.|||.|...|.... .+..+.-+.|..+||.-. ..|.|. ..|||||.|||-+|.+|..+. .+.+|
T Consensus 783 ~MTveEA~~FF~~~---------p~I~rkLqtL~dVGLgYi---~LGQpa-tTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI---------PKIARKLQTLVDVGLGYI---KLGQPA-TTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc---------hHHHHHHHHHHHcCcceE---ecCCcc-ccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 36888877776421 112233355666788643 456554 469999999999999999887 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE-----ecCcEEEEEcCCCcc
Q 001048 750 DEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM-----KNGGRIIYFGPLGQH 814 (1174)
Q Consensus 750 DEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l-----~~~G~~v~~G~~~~~ 814 (1174)
||||+||-....+++++.|.+|.++|.|||++.|.+ ++.+.+|.++=| .+||++|..|+|++.
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeev 917 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEV 917 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHH
Confidence 999999999999999999999999999999999975 688999999888 478999999999653
No 396
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.89 E-value=9e-22 Score=256.61 Aligned_cols=126 Identities=24% Similarity=0.377 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcC---CcEEEE
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVAN---PSIIFM 749 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~---p~illl 749 (1174)
++||.|.+.|... ..+-.+.-+.|..+||..+ ..|.+. ..|||||.||+-+|..|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl---~LGq~~-~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPF---------LKKIQKPLQALIDNGLGYL---PLGQNL-SSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhc---------cHHHHHHHHHHHHcCCCee---eCCCcC-CccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 4677777777531 1123334567888888754 345543 36999999999999999876 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE-----ecCcEEEEEcCCCc
Q 001048 750 DEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM-----KNGGRIIYFGPLGQ 813 (1174)
Q Consensus 750 DEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l-----~~~G~~v~~G~~~~ 813 (1174)
||||+||++.....+++.|++|.+.|.|||++.|++ ++.+.+|.++=| .+||+||+.|+|++
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~ 1793 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKD 1793 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHH
Confidence 999999999999999999999999999999999975 678889999988 36799999999964
No 397
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=3.1e-23 Score=232.42 Aligned_cols=146 Identities=27% Similarity=0.375 Sum_probs=121.6
Q ss_pred cchhhhcCCCCCc-------cHHHHHHHhhhcc----chhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHH
Q 001048 4 IKLEKLAGIFPDP-------DVDAYMKAISAEG----LENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 4 ~~~~~~~~~~~~~-------~v~~~~~~~~~~~----~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
.+.++..|++||. ++.+.++....-. .+..++++++++.+||.+.++.+++ ++|||||||++||
T Consensus 74 ~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~lS~G~kqrl~ia 148 (293)
T COG1131 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVR-----TLSGGMKQRLSIA 148 (293)
T ss_pred HHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchh-----hcCHHHHHHHHHH
Confidence 4567788888873 4446665433221 3446689999999999997777775 4999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHHH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCKF 152 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~y 152 (1174)
.||+++|++|||||||+|||+.++..+++.|+++++..++||++|.|++. ++..+||+|++|++|+++++|+.++....
T Consensus 149 ~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 149 LALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999999865689999976554 77788999999999999999988877666
Q ss_pred Hhh
Q 001048 153 FEG 155 (1174)
Q Consensus 153 f~~ 155 (1174)
+..
T Consensus 228 ~~~ 230 (293)
T COG1131 228 FGG 230 (293)
T ss_pred hcc
Confidence 543
No 398
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.6e-23 Score=245.67 Aligned_cols=104 Identities=23% Similarity=0.407 Sum_probs=94.4
Q ss_pred hCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCC
Q 001048 43 LGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPA 122 (1174)
Q Consensus 43 lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps 122 (1174)
.++.+..||.||+. +..||||||||+||||||++||+||+|||+||+||+.||..|+++|++..+ +||||+ .+||
T Consensus 588 ~~~p~gY~T~VGEk-G~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlv--IAHR 662 (716)
T KOG0058|consen 588 TNFPDGYNTVVGEK-GSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLV--IAHR 662 (716)
T ss_pred HhCccccccccCCc-cccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEE--Eehh
Confidence 57889999999992 223999999999999999999999999999999999999999999999874 588886 4789
Q ss_pred hhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 123 PETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 123 ~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
.+|++.+|+|+|+++|++++.|+|++.++
T Consensus 663 LSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 663 LSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred hhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999999999999987654
No 399
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.5e-23 Score=225.25 Aligned_cols=138 Identities=28% Similarity=0.369 Sum_probs=111.3
Q ss_pred chhhhcCCCCCccHH------HHHHHhh--hccchhhh-----HHHHHHHHhCCcccccccccCCCccc--CCccccchh
Q 001048 5 KLEKLAGIFPDPDVD------AYMKAIS--AEGLENSL-----QTDYILKILGLDICADTMVGDPMRRG--VSGGQKKRL 69 (1174)
Q Consensus 5 ~~~~~~~~~~~~~v~------~~~~~~~--~~~~e~~~-----~v~~vl~~lgL~~~~dT~VG~~~~rG--LSGGqKkRv 69 (1174)
-.||..|+.||+.++ -.+|... .+.+|+.. .+...++ -|.+..||+||+ || |||||||||
T Consensus 334 slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vge---rglklSggekqrv 408 (497)
T COG5265 334 SLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGE---RGLKLSGGEKQRV 408 (497)
T ss_pred HHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHH--hCchhhhcccch---heeeccCchHHHH
Confidence 368999999999888 2333211 11222211 1222333 467889999999 66 899999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||.|+++|+||+|||+||+||+.+|+.++.+|++.+ .|+|.++ ..||.+|+-.+|.|+||++|+++|.|+|.+.
T Consensus 409 aiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlv--iahrlsti~~adeiivl~~g~i~erg~h~~l 484 (497)
T COG5265 409 AIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLV--IAHRLSTIIDADEIIVLDNGRIVERGTHEEL 484 (497)
T ss_pred HHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEE--EeehhhhccCCceEEEeeCCEEEecCcHHHH
Confidence 99999999999999999999999999999999999988 4677665 4689999999999999999999999999876
Q ss_pred HH
Q 001048 150 CK 151 (1174)
Q Consensus 150 ~~ 151 (1174)
++
T Consensus 485 l~ 486 (497)
T COG5265 485 LA 486 (497)
T ss_pred HH
Confidence 65
No 400
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.87 E-value=5.7e-23 Score=226.48 Aligned_cols=140 Identities=25% Similarity=0.344 Sum_probs=112.9
Q ss_pred chhhhcCCCCCccHH------HHHHHhh--hccchhhhHH---HHHHHHhCCcccccccccCCCccc--CCccccchhHH
Q 001048 5 KLEKLAGIFPDPDVD------AYMKAIS--AEGLENSLQT---DYILKILGLDICADTMVGDPMRRG--VSGGQKKRLTT 71 (1174)
Q Consensus 5 ~~~~~~~~~~~~~v~------~~~~~~~--~~~~e~~~~v---~~vl~~lgL~~~~dT~VG~~~~rG--LSGGqKkRvSI 71 (1174)
-.|+..|+.||++|+ -.++... ...+|..+.. +-==+.+++.+..+|+||+ || |||||||||+|
T Consensus 609 SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGE---RGLkLSGGEKQRVAi 685 (790)
T KOG0056|consen 609 SLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGE---RGLKLSGGEKQRVAI 685 (790)
T ss_pred HHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhh---cccccCCcchhhHHH
Confidence 468999999999888 2333222 1222221111 1112568999999999999 55 89999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
||+++++|.|++|||+||+||..+|+.||.+|.+++. +||.|+ ..||.+++-++|-|+++++|+++|.|.|++...
T Consensus 686 ARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIV--vAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 686 ARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIV--VAHRLSTIVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred HHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEE--EeeeehheecccEEEEEeCCeEeecCcHHHHHh
Confidence 9999999999999999999999999999999999985 566554 367999999999999999999999999976553
No 401
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=3.2e-22 Score=198.72 Aligned_cols=213 Identities=16% Similarity=0.255 Sum_probs=160.5
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCC--eEEEEEEECCeeCC---cccccc----eEEEEccC
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG--IIEGDIRIGGYPKV---QHTFAR----ISGYCEQN 667 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~---~~~~~~----~~~~v~Q~ 667 (1174)
+..++++++|+++.+||+-+++|.||||||-..|+|+|..+.. .+.....+++.++- ....|+ .+++++|+
T Consensus 18 G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQe 97 (330)
T COG4170 18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcC
Confidence 4568999999999999999999999999999999999965431 22344556665532 222333 46789998
Q ss_pred CC--CCCCCCHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhc
Q 001048 668 DI--HSPNITVEESIVFSAWLRLSTQIDS---KTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA 742 (1174)
Q Consensus 668 ~~--~~~~lTv~e~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~ 742 (1174)
+. +-|.-+|...+.-.......++... .-++.++-+++..+|+.+..|-.-.+| .+|.-||-|+|.||.|++.
T Consensus 98 P~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP--~ElTeGE~QKVMIA~A~An 175 (330)
T COG4170 98 PQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP--YELTEGECQKVMIAIALAN 175 (330)
T ss_pred chhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc--chhccCcceeeeeehhhcc
Confidence 74 3344444433322211111111000 113456778899999998888776665 4799999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 743 NPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 743 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
+|++|+.||||+.+|+.++.+|.++|.++.+ +|.||++++||.. .+-+-+|++-++.- |+-++.++.++
T Consensus 176 qPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYC-GQ~~ESa~~e~ 245 (330)
T COG4170 176 QPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYC-GQTVESAPSEE 245 (330)
T ss_pred CCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEe-cccccccchhH
Confidence 9999999999999999999999999999975 4899999999985 67788999999975 89999998753
No 402
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.5e-22 Score=226.36 Aligned_cols=144 Identities=21% Similarity=0.277 Sum_probs=112.8
Q ss_pred ccchhhhcCCCCCccHHH---HHHHhhhc-cchhhhHHHHHHHHh-------CCcccccccccCCCcccCCccccchhHH
Q 001048 3 VIKLEKLAGIFPDPDVDA---YMKAISAE-GLENSLQTDYILKIL-------GLDICADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 3 ~~~~~~~~~~~~~~~v~~---~~~~~~~~-~~e~~~~v~~vl~~l-------gL~~~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
.+-.|+.+|+.||+.++. .+..+... ..-..++|-++-+.. .|++..+|.||+. ++-|||||||||||
T Consensus 420 ~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGer-G~~LSGGekQrvsl 498 (591)
T KOG0057|consen 420 LESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGER-GLMLSGGEKQRVSL 498 (591)
T ss_pred hHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhc-ccccccchHHHHHH
Confidence 456799999999987772 22222211 000111233333433 4567889999992 22399999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
||++++||+|++||||||.||+.||.++++.+.+.. .+||+|+-. |+.++...||+|++|++|++.+.|+|++++.
T Consensus 499 aRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~Iv--H~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 499 ARAFLKDAPILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIV--HRLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEE--ecchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999999999999999999943 589999854 5888999999999999999999999998776
No 403
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.86 E-value=1e-21 Score=195.49 Aligned_cols=137 Identities=23% Similarity=0.300 Sum_probs=117.6
Q ss_pred chhhhcCCCCC-------ccHHHHHHHh----hhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 5 KLEKLAGIFPD-------PDVDAYMKAI----SAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 5 ~~~~~~~~~~~-------~~v~~~~~~~----~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
.+|+..|+.+. .++.+.++.. .+...|.+.+++++.+.|+|.+|.|+++|+ +|-|+||||+|||
T Consensus 72 ~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~-----~S~G~kqkV~iAR 146 (245)
T COG4555 72 FVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGE-----FSTGMKQKVAIAR 146 (245)
T ss_pred HHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhh-----hchhhHHHHHHHH
Confidence 45666666553 4455555532 355777788999999999999999999987 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
||+.+|+|++|||||||||-.+.+.+.+.++++.. .|++||.|-| -.+++-++||++++|.+|++|+.|+.+.
T Consensus 147 Alvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSSH-~m~EvealCDrvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 147 ALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSSH-IMQEVEALCDRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred HHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEecc-cHHHHHHhhheEEEEecCcEEEcCCHHH
Confidence 99999999999999999999999999999999864 6999999864 6778888999999999999999998754
No 404
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=7.8e-22 Score=202.21 Aligned_cols=112 Identities=24% Similarity=0.329 Sum_probs=103.0
Q ss_pred hHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCE
Q 001048 34 LQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDAT 113 (1174)
Q Consensus 34 ~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~t 113 (1174)
.+.-+.|+.+|+.+.+-++.+. |||||+|||+|||+|+.+|+|++-||||++||+.++.+||+.|+++++..|.|
T Consensus 126 ~~Al~aLervgi~~~A~qra~~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~T 200 (258)
T COG3638 126 AQALDALERVGILDKAYQRAST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGIT 200 (258)
T ss_pred HHHHHHHHHcCcHHHHHHHhcc-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCE
Confidence 4556789999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 114 ALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 114 vI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
+|+++||=- -.-+.||||+=|.+|+++|.||++++.+
T Consensus 201 vi~nLH~vd-lA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 201 VIVNLHQVD-LAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred EEEEechHH-HHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 999998653 4568899999999999999999876544
No 405
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.85 E-value=1.3e-21 Score=239.83 Aligned_cols=143 Identities=22% Similarity=0.289 Sum_probs=115.9
Q ss_pred cccchhhhcCCCCCccHH------HHHHHhhhccchhhhHHHHHHHH-------hCCcccccccccCCCcccCCccccch
Q 001048 2 EVIKLEKLAGIFPDPDVD------AYMKAISAEGLENSLQTDYILKI-------LGLDICADTMVGDPMRRGVSGGQKKR 68 (1174)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~e~~~~v~~vl~~-------lgL~~~~dT~VG~~~~rGLSGGqKkR 68 (1174)
+.+..|+..|+.||++.+ +.+....++-. .+++.+.++. ..|....||.||+ ++.+||||||||
T Consensus 541 ~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~--~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E-~G~~LSGGQrQr 617 (709)
T COG2274 541 DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEAT--DEEIIEAAQLAGAHEFIENLPMGYDTPVGE-GGANLSGGQRQR 617 (709)
T ss_pred CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCC--HHHHHHHHHHhCcHHHHHhccccccccccc-CCCCCCHHHHHH
Confidence 567889999999998877 44443222211 1223333332 3567788999998 455699999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 69 LTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 69 vSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
++|||+|+++|+||+||||||+||+.|+..|.+.|+++. .|+|+|+- .||.++++.+|||+||.+|+++++|+|++
T Consensus 618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~I--aHRl~ti~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIII--AHRLSTIRSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEE--EccchHhhhccEEEEccCCceeccCCHHH
Confidence 999999999999999999999999999999999999986 46888864 57889999999999999999999999987
Q ss_pred HHH
Q 001048 149 SCK 151 (1174)
Q Consensus 149 ~~~ 151 (1174)
...
T Consensus 694 ll~ 696 (709)
T COG2274 694 LLA 696 (709)
T ss_pred HHH
Confidence 765
No 406
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.85 E-value=8.4e-21 Score=215.65 Aligned_cols=203 Identities=20% Similarity=0.269 Sum_probs=152.2
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..+++++|+...+. .+..+++|+|++|+.|+-+.|+||||||||+|+++|+|+.+ ..+|++.--...
T Consensus 432 n~i~~e~v~l~tPt-----------~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp--~~~G~l~k~~~~ 498 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPT-----------NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP--STGGKLTKPTDG 498 (659)
T ss_pred ceEEeeeeeecCCC-----------CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc--cCCCeEEecccC
Confidence 57999999875321 13568889999999999999999999999999999999987 346877653221
Q ss_pred CCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCC------CCCC
Q 001048 652 KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLP------GVNG 725 (1174)
Q Consensus 652 ~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~------~~~~ 725 (1174)
- .+.+-|+||.|.+ +..|.||.+.|...--. ...+....+++.+.|+.++|.|..++.-|-. ....
T Consensus 499 ~-----~~~lfflPQrPYm-t~GTLRdQvIYP~~~~~--~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dv 570 (659)
T KOG0060|consen 499 G-----PKDLFFLPQRPYM-TLGTLRDQVIYPLKAED--MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDV 570 (659)
T ss_pred C-----CCceEEecCCCCc-cccchhheeeccCcccc--ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhh
Confidence 1 1346899999865 56699999988632111 1111223456778888888887765543321 1235
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
||+||+||++.||-+.++|++-+|||.||++|...+..+.+.+++ .|.|.|-|.|+.+ +.+ +.+.++-.+
T Consensus 571 LS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~k-fHd~~L~~~ 640 (659)
T KOG0060|consen 571 LSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWK-FHDYVLRMD 640 (659)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHh-hhhEEEEec
Confidence 999999999999999999999999999999999999999888876 4999999999865 344 444444444
No 407
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.84 E-value=7.7e-21 Score=195.91 Aligned_cols=137 Identities=25% Similarity=0.332 Sum_probs=120.1
Q ss_pred hcCCCCCccHHHHHHHhhh----ccchhhhHHHHHHHHhCCcc--cccccccCCCcccCCccccchhHHHHHHhcCCcEe
Q 001048 9 LAGIFPDPDVDAYMKAISA----EGLENSLQTDYILKILGLDI--CADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRAL 82 (1174)
Q Consensus 9 ~~~~~~~~~v~~~~~~~~~----~~~e~~~~v~~vl~~lgL~~--~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL 82 (1174)
..|++||.+|.+.+..++. ++++.+++++++|+.+||+. -+|.. .+.|||||+|||-|||||..+|+||
T Consensus 83 qigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSGGQQQRVGv~RALAadP~il 157 (309)
T COG1125 83 QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSGGQQQRVGVARALAADPPIL 157 (309)
T ss_pred hcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCcchhhHHHHHHHHhcCCCeE
Confidence 3567999999987766552 36677889999999999974 45554 4569999999999999999999999
Q ss_pred eeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 83 FMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 83 ~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
++|||-++|||-++.++|+-++++-+..++|+|.- .|--.|.++++|||++|++|+++-+|++++.+.
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfV-THDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFV-THDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEE-ecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999999998889999975 468999999999999999999999999887765
No 408
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.84 E-value=2.3e-21 Score=207.41 Aligned_cols=114 Identities=26% Similarity=0.397 Sum_probs=104.0
Q ss_pred chhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHh
Q 001048 30 LENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 109 (1174)
Q Consensus 30 ~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~ 109 (1174)
++-.+.|++.|+.+|+++-++..+.+ |||||||||.||+||+.+|+||+||||||.||-....+|++.+++++++
T Consensus 113 ~~D~~~v~~aL~~~~~~~la~r~~~~-----LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~ 187 (258)
T COG1120 113 KEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187 (258)
T ss_pred HhHHHHHHHHHHHhCcHHHhcCcccc-----cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh
Confidence 33344789999999999999999977 9999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 110 TDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 110 ~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
.|+|+|+++|-+. -..+.+|++++|.+|+++.+|++++.
T Consensus 188 ~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 188 KGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred cCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchh
Confidence 8999999988655 56799999999999999999987543
No 409
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=3.5e-21 Score=206.41 Aligned_cols=140 Identities=23% Similarity=0.351 Sum_probs=114.0
Q ss_pred ccchhhhcCCC-CCccHH-------H----HHHHhhhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhH
Q 001048 3 VIKLEKLAGIF-PDPDVD-------A----YMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 3 ~~~~~~~~~~~-~~~~v~-------~----~~~~~~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
..+.|+..|+. ++||-| + .........+|..++++++|+.+||.+.+|...-+ |||||||||+
T Consensus 74 ~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~-----LSGGqkqRva 148 (235)
T COG1122 74 LLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFN-----LSGGQKQRVA 148 (235)
T ss_pred HHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccc-----cCCcceeeHH
Confidence 34566667763 334444 1 22223344556778999999999999999988754 9999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
||.+|+.+|++|+|||||||||+.+...+++.++++.+..|.|+|+..| -...+...+|++++|++|+++++|++.+
T Consensus 149 IA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tH-d~~~~~~~ad~v~vl~~G~i~~~g~p~~ 225 (235)
T COG1122 149 IAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTH-DLELVLEYADRVVVLDDGKILADGDPAE 225 (235)
T ss_pred hhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeC-cHHHHHhhCCEEEEEECCEEeecCCHHH
Confidence 9999999999999999999999999999999999999876788887654 5567777799999999999999998643
No 410
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.84 E-value=1e-20 Score=213.41 Aligned_cols=212 Identities=20% Similarity=0.252 Sum_probs=135.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.+.++|++.. ..++.+++|++|++.+|+-++|+|+|||||||+|++|.|+..+.|..=.++.-.++.
T Consensus 75 dvk~~sls~s-------------~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~ 141 (614)
T KOG0927|consen 75 DVKIESLSLS-------------FHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREI 141 (614)
T ss_pred cceeeeeeec-------------cCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccC
Confidence 4666777663 235789999999999999999999999999999999999876544332333322221
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHh-hcc----------------CCCCCHHHHHHHHHHHHHHcCC-CCcc
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAW-LRL----------------STQIDSKTKAEFVNEVLQTIEL-DGIK 714 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~-~~~----------------~~~~~~~~~~~~~~~~l~~l~l-~~~~ 714 (1174)
.... .+.+-++.+ +....+.-+.+-.. +.. ....+.+..+.++.+++..+|. .+..
T Consensus 142 ~ps~-~~av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~ 215 (614)
T KOG0927|consen 142 EPSE-KQAVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQ 215 (614)
T ss_pred CCch-HHHHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHH
Confidence 1110 000001110 11111111111100 000 0011222333445555555553 3445
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhc
Q 001048 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD 794 (1174)
Q Consensus 715 ~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d 794 (1174)
++.+ .++|||+|.|+++||+|..+|++|+|||||++||..+..-+-+.|.+..+ .++++++|.-+ .+-..|.
T Consensus 216 ~k~~-----~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~QD-fln~vCT 287 (614)
T KOG0927|consen 216 DKKV-----KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQD-FLNGVCT 287 (614)
T ss_pred HHHh-----hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecchh-hhhhHhh
Confidence 5554 47999999999999999999999999999999999999999998877532 28999999754 3445667
Q ss_pred ceeEEecCcE-EEEEcCCC
Q 001048 795 DLVLMKNGGR-IIYFGPLG 812 (1174)
Q Consensus 795 ~~~~l~~~G~-~v~~G~~~ 812 (1174)
+++-+. .++ +.|.|+-+
T Consensus 288 ~Ii~l~-~kkl~~y~Gnyd 305 (614)
T KOG0927|consen 288 NIIHLD-NKKLIYYEGNYD 305 (614)
T ss_pred hhheec-ccceeeecCCHH
Confidence 777776 467 66677754
No 411
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=1.9e-20 Score=198.35 Aligned_cols=166 Identities=15% Similarity=0.143 Sum_probs=115.7
Q ss_pred cccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE--CCee---C-CcccccceEEEEccCCCCCCCCC
Q 001048 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI--GGYP---K-VQHTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 602 L~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~--~g~~---~-~~~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
++++++++.+| +.+|+||||||||||+.+|..... |+... .|.. . ........+.+.+|+....+
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-----~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~--- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-----GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA--- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-----CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC---
Confidence 36677888887 889999999999999999874221 11110 1211 0 11112344677777755443
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHh----hcCCcEEEEeC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVEL----VANPSIIFMDE 751 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al----~~~p~illlDE 751 (1174)
| ... ....+.++++++. .+..++.+ +.||+|||||++||+++ +.+|++++|||
T Consensus 83 ---~-----------~~~-~~~~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlDE 139 (198)
T cd03276 83 ---N-----------PLC-VLSQDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLDE 139 (198)
T ss_pred ---C-----------cCC-HHHHHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 1 011 1123456677765 44445544 46999999999999999 58999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc---CCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 752 PTSGLDARAAATVMRAVKNVVET---GRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 752 PtsgLD~~~~~~i~~~l~~l~~~---g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
||+|||+.++..+.+.|+++.++ +.|||+++|+++ ++ ..+|++-++..
T Consensus 140 P~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i-~~~d~v~~~~~ 190 (198)
T cd03276 140 FDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GL-ASSDDVKVFRM 190 (198)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-cc-ccccceeEEEe
Confidence 99999999999999999998643 368999999875 34 45588888754
No 412
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.83 E-value=6e-21 Score=196.25 Aligned_cols=143 Identities=22% Similarity=0.281 Sum_probs=117.0
Q ss_pred cccchhhhcCCCCCc-------cHHH----HHH-HhhhccchhhhHHHHHHHHhCCccc-ccccccCCCcccCCccccch
Q 001048 2 EVIKLEKLAGIFPDP-------DVDA----YMK-AISAEGLENSLQTDYILKILGLDIC-ADTMVGDPMRRGVSGGQKKR 68 (1174)
Q Consensus 2 ~~~~~~~~~~~~~~~-------~v~~----~~~-~~~~~~~e~~~~v~~vl~~lgL~~~-~dT~VG~~~~rGLSGGqKkR 68 (1174)
|+.+.|+.+|++=|+ +|.+ -|+ ....++.+.++.+..=|+..||... +|-.-.+ ||||+|||
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsE-----LSGGM~KR 153 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSE-----LSGGMRKR 153 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchh-----hcchHHHH
Confidence 455788889986663 3333 222 2334455666677777899999987 6665544 99999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 69 LTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 69 vSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+++||||+.||.|||+|||||||||.++..+.+.++++.+..|.|+++- .|.-++++..+|++++|.+|+++.+||+++
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~V-THDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMV-THDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEE-ECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998888888874 456779999999999999999999999876
Q ss_pred HH
Q 001048 149 SC 150 (1174)
Q Consensus 149 ~~ 150 (1174)
..
T Consensus 233 l~ 234 (263)
T COG1127 233 LL 234 (263)
T ss_pred HH
Confidence 54
No 413
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=4.4e-21 Score=211.22 Aligned_cols=181 Identities=16% Similarity=0.213 Sum_probs=117.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee-C-Cc------ccccce--EEEEccCCCC-CCCCCHHHHHHH
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP-K-VQ------HTFARI--SGYCEQNDIH-SPNITVEESIVF 682 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~-~-~~------~~~~~~--~~~v~Q~~~~-~~~lTv~e~l~~ 682 (1174)
+++|+||||||||||+++|++...+ ..|++..++.. . .. ...... +.|..|++.. ....++++...
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~--~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~- 100 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGE--KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS- 100 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce-
Confidence 9999999999999999999986542 23555433211 0 00 001112 3344443221 11111111100
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHHcCCCCccccc----------cc-CC------CCCCCCHHHHHHHHHHHHhhcC--
Q 001048 683 SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL----------VG-LP------GVNGLSTEQRKRLTIAVELVAN-- 743 (1174)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~----------~~-~~------~~~~LSgGqrqRv~ia~al~~~-- 743 (1174)
..+... +....+.++++++.+|+....... .. .| .+..||||||||++||++++.+
T Consensus 101 --~~~ing---k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~ 175 (247)
T cd03275 101 --SYRING---KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSY 175 (247)
T ss_pred --EEEECC---EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhcc
Confidence 011111 111233456788888885321111 00 01 1256999999999999999875
Q ss_pred --CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 744 --PSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 744 --p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|++++|||||+|||+..+..+.+.|++++++|.|+|++||++ ++.+.+|+++++.+++.
T Consensus 176 ~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~~~~ 236 (247)
T cd03275 176 QPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYRDQE 236 (247)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEecCC
Confidence 899999999999999999999999999987799999999984 67788999999987653
No 414
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.83 E-value=6e-21 Score=217.77 Aligned_cols=139 Identities=22% Similarity=0.292 Sum_probs=114.3
Q ss_pred chhhhcCCCCCc-------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 5 KLEKLAGIFPDP-------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 5 ~~~~~~~~~~~~-------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
+.|+..|+++|+ ++.+.+.... ..+.+..+++.++++.+||.+..|...++ |||||||||+|||
T Consensus 79 ~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~-----LSgGqkQRV~IAR 153 (343)
T TIGR02314 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSN-----LSGGQKQRVAIAR 153 (343)
T ss_pred HHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHH
Confidence 346677877764 3444443211 22344556789999999999999988755 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
||+++|+||+|||||||||+.++..+++.|+++.+..|.|+|++.|+ ...+.+.+|+|++|++|++++.|++++.
T Consensus 154 AL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~-~~~v~~~~d~v~vl~~G~iv~~g~~~~v 228 (343)
T TIGR02314 154 ALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE-MDVVKRICDCVAVISNGELIEQGTVSEI 228 (343)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999987668899987765 4566788999999999999999987654
No 415
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.82 E-value=1.4e-20 Score=213.24 Aligned_cols=139 Identities=24% Similarity=0.327 Sum_probs=115.7
Q ss_pred chhhhcCCCCC-------ccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 5 KLEKLAGIFPD-------PDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 5 ~~~~~~~~~~~-------~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
+.|+..|++|| .++.+.+.... ....+..++++++++.+||.+.+|+.+++ ||||||||++||+
T Consensus 77 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~ 151 (306)
T PRK13537 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGE-----LSGGMKRRLTLAR 151 (306)
T ss_pred HHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhh-----CCHHHHHHHHHHH
Confidence 34667788776 34555554322 12233445788999999999999999965 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
+|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|+|++.|++. ++.+.+|+|++|++|++++.|++++..
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999975 5889999877655 778899999999999999999987654
No 416
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.82 E-value=1.7e-21 Score=209.70 Aligned_cols=209 Identities=27% Similarity=0.510 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHHhhcChhhH-HHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhHHhHHHHHHHHHHHHHHHhHHHHHH
Q 001048 899 EQFKACMWKHNLSYWRNPSYN-LIRIVFTCAMSLLFGILFWQKGKKIKNQQDVFNILGALFSAAVFFGIVNCSLVIPLVT 977 (1174)
Q Consensus 899 ~q~~~l~~R~~~~~~R~~~~~-~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 977 (1174)
+|++.+++|+++..+|||.+. ...++..++.++++|.+|.++++ +.++. ++.|++++.+.+..+...........
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGN---SQDGF-NRPGLIFGSIIFSFFSSISGSSISFE 76 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccc---ccccc-ccceeeehhhHHhhhhhcccchhhhh
Confidence 599999999999999999888 89999999999999999998862 22233 66788887777776555555545677
Q ss_pred HhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001048 978 TERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYHWSGYKIFWSFYGMFCNLLYFNYMGMLIVSL 1057 (1174)
Q Consensus 978 ~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~ 1057 (1174)
.||..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +++.+++.+++..+++.++|.+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~ 154 (210)
T PF01061_consen 77 RERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAAL 154 (210)
T ss_pred hhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999987 77777888888888899999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCCcchhhhhhhhCHHHHHHHHHHHHhh
Q 001048 1058 TPNIQVASILASSFYSMLNLFCGFTIPKPQIPKWWTWAYYLCPTSWVLKGMLSSQY 1113 (1174)
Q Consensus 1058 ~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~nef 1113 (1174)
+++.+.+..+.+++..++++++|.++|.+++|+|++|+.|+||++|++|++..++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 155 FPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999998876
No 417
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=2.5e-20 Score=185.34 Aligned_cols=138 Identities=21% Similarity=0.337 Sum_probs=117.6
Q ss_pred chhhhcCCCCC-------ccHHHHHHH----hhh--ccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHH
Q 001048 5 KLEKLAGIFPD-------PDVDAYMKA----ISA--EGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 5 ~~~~~~~~~~~-------~~v~~~~~~----~~~--~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
++|...|..|| .+|.+.+.. ... ++.|++.+.|++|++|+|.|++|..-.. ||||||||+-|
T Consensus 76 RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~s-----LSGGERRR~EI 150 (243)
T COG1137 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYS-----LSGGERRRVEI 150 (243)
T ss_pred HhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccc-----cccchHHHHHH
Confidence 45677788888 344443332 222 2346666789999999999999998766 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
||||..+|+.++||||-+|.||-+-.+|++.++.+.+ +|.-|++|=|.-+ ||+..+||.+++++|+++.+|++++.
T Consensus 151 ARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei 226 (243)
T COG1137 151 ARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEI 226 (243)
T ss_pred HHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHH
Confidence 9999999999999999999999999999999999986 5899999988776 89999999999999999999988644
No 418
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.82 E-value=1.7e-20 Score=233.64 Aligned_cols=140 Identities=21% Similarity=0.249 Sum_probs=114.0
Q ss_pred cchhhhcCCCCCcc------HHHHHHHhhhccchhhhHHHHHHHHhCCc-------ccccccccCCCcccCCccccchhH
Q 001048 4 IKLEKLAGIFPDPD------VDAYMKAISAEGLENSLQTDYILKILGLD-------ICADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 4 ~~~~~~~~~~~~~~------v~~~~~~~~~~~~e~~~~v~~vl~~lgL~-------~~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
.+.|+..+++||+. +.+.+..-.. .-.++++++.++..||. +..||.||+. +..||||||||++
T Consensus 419 ~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~--~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~-G~~LSGGQrQRia 495 (588)
T PRK11174 419 ESWRKHLSWVGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQ-AAGLSVGQAQRLA 495 (588)
T ss_pred HHHHhheEEecCCCcCCCcCHHHHhhcCCC--CCCHHHHHHHHHHhCHHHHHHhcccccccccccC-CCCCCHHHHHHHH
Confidence 46788899999954 4466654321 12234567777777765 4679999984 4459999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+++|+||+||||||+||+.++..|++.|+++. .++|+|+-.|++ ++++.+|+|++|.+|++++.|+|++..
T Consensus 496 lARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iivl~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 496 LARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWVMQDGQIVQQGDYAELS 571 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEEEeCCeEeecCCHHHHH
Confidence 9999999999999999999999999999999999875 478888766665 788999999999999999999987664
No 419
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.82 E-value=4.5e-20 Score=193.59 Aligned_cols=122 Identities=24% Similarity=0.380 Sum_probs=102.7
Q ss_pred CCCCCccHHHHHHH---hh-hccchhhhHHHHHHHHhCCccccc-ccccCCCcccCCccccchhHHHHHHhcCCcEeeee
Q 001048 11 GIFPDPDVDAYMKA---IS-AEGLENSLQTDYILKILGLDICAD-TMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMD 85 (1174)
Q Consensus 11 ~~~~~~~v~~~~~~---~~-~~~~e~~~~v~~vl~~lgL~~~~d-T~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LD 85 (1174)
.+.|+.++.+.+.. .. ....++.+.++++++.+||.+..+ ....+ |||||||||||||||+.+|+|++.|
T Consensus 93 nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~e-----LSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 93 NLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSE-----LSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchh-----cCHHHHHHHHHHHHHhcCCCeEEee
Confidence 34666777776552 11 112155677899999999997776 77765 9999999999999999999999999
Q ss_pred CCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCc
Q 001048 86 EISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGK 139 (1174)
Q Consensus 86 EPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~ 139 (1174)
|||..||+.++..|++.|+++++..|+|+|+..| .+++...+||++.|.+|+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTH--d~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH--DPELAKYADRVIELKDGK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcC--CHHHHHhCCEEEEEeCCe
Confidence 9999999999999999999999888999998765 667788999999999999
No 420
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.82 E-value=3.9e-20 Score=181.01 Aligned_cols=132 Identities=20% Similarity=0.348 Sum_probs=112.9
Q ss_pred CCCCCccHHHHHHH-hh---hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeC
Q 001048 11 GIFPDPDVDAYMKA-IS---AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDE 86 (1174)
Q Consensus 11 ~~~~~~~v~~~~~~-~~---~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDE 86 (1174)
.+++|.+|...+.. .. .-..|..+.|+.++...||..+.+.+-|. |||||||||++||.||++-+||+|||
T Consensus 81 NLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGqRQRvALARclvR~~PilLLDE 155 (231)
T COG3840 81 NLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARCLVREQPILLLDE 155 (231)
T ss_pred ccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccc-----cCchHHHHHHHHHHHhccCCeEEecC
Confidence 45666777655431 11 11334445689999999999999998876 99999999999999999999999999
Q ss_pred CCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 87 ISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 87 PTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
|-|+||+.-+.+....+.+++.+++.|+++-.|||. +..+.+|+++++++|++.++|+.++
T Consensus 156 PFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~ 216 (231)
T COG3840 156 PFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQE 216 (231)
T ss_pred chhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHH
Confidence 999999999999999999999999999999888876 7789999999999999999998653
No 421
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.82 E-value=3.8e-20 Score=191.63 Aligned_cols=134 Identities=22% Similarity=0.260 Sum_probs=106.8
Q ss_pred CCCccHHHHHHHhhhc--cchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCC
Q 001048 13 FPDPDVDAYMKAISAE--GLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNG 90 (1174)
Q Consensus 13 ~~~~~v~~~~~~~~~~--~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSG 90 (1174)
.|-.+|...+...... -.+.++++.++|+.+||....=.+ +...|||||||||||||||+.+|++|+||||||+
T Consensus 96 nP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R----~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSa 171 (252)
T COG1124 96 NPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDR----RPHELSGGQRQRIAIARALIPEPKLLILDEPTSA 171 (252)
T ss_pred CcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhc----CchhcChhHHHHHHHHHHhccCCCEEEecCchhh
Confidence 4445666655533221 222334589999999999744332 2245999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 91 LDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 91 LDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
||+....+|++.|.++.+.++.|.|+ |-|-..-+..+||||+||.+|++++.+|.++...
T Consensus 172 LD~siQa~IlnlL~~l~~~~~lt~l~-IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 172 LDVSVQAQILNLLLELKKERGLTYLF-ISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred hcHHHHHHHHHHHHHHHHhcCceEEE-EeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999888888886 4556677888999999999999999999765443
No 422
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.81 E-value=3.6e-20 Score=210.14 Aligned_cols=139 Identities=24% Similarity=0.374 Sum_probs=114.6
Q ss_pred hhhhcCCCCCc-------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHH
Q 001048 6 LEKLAGIFPDP-------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGEL 74 (1174)
Q Consensus 6 ~~~~~~~~~~~-------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~a 74 (1174)
.|+..|++||. ++.+.+.... ....+..++++++++.+||.+..|+.+++ |||||||||+||++
T Consensus 64 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~a 138 (302)
T TIGR01188 64 VRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGT-----YSGGMRRRLDIAAS 138 (302)
T ss_pred HHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhh-----CCHHHHHHHHHHHH
Confidence 45667887773 4445554321 11233345789999999999999999866 99999999999999
Q ss_pred HhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 75 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 75 Lv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|+|++.|.+ .++.+.+|+|++|.+|++++.|++++...
T Consensus 139 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999999999999999999975 488999987765 47788999999999999999999876543
No 423
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=4e-20 Score=208.41 Aligned_cols=153 Identities=18% Similarity=0.253 Sum_probs=118.9
Q ss_pred chhhhcCCCCCcc--------HHHHHHHhh----hccchhhhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHH
Q 001048 5 KLEKLAGIFPDPD--------VDAYMKAIS----AEGLENSLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 5 ~~~~~~~~~~~~~--------v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
+.|+..|+++|.. +.+.+.... ....+..++++++++.+||. +..|+.+++ |||||||||+|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq~qrv~l 156 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFE-----LSGGQMRRVAI 156 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCccc-----CCHHHHHHHHH
Confidence 4556788888742 222222111 12233345789999999997 567887755 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH--
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS-- 149 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~-- 149 (1174)
|++|+.+|+||+|||||+|||+.++..+.+.|+++++..|.|||++.|.+. .+.+.+|||++|.+|++++.|++++.
T Consensus 157 AraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999999998766889998877665 67788999999999999999987654
Q ss_pred -HHHHhhCCCCCCCC
Q 001048 150 -CKFFEGCGFRCPDR 163 (1174)
Q Consensus 150 -~~yf~~~G~~~p~~ 163 (1174)
...+...|..+|..
T Consensus 236 ~~~~~~~~~~~~~~~ 250 (290)
T PRK13634 236 DPDELEAIGLDLPET 250 (290)
T ss_pred CHHHHHHCCCCCCHH
Confidence 23344556655543
No 424
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=5e-20 Score=212.08 Aligned_cols=132 Identities=23% Similarity=0.260 Sum_probs=112.4
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+.... ..+.+..++++++++.+||++..|..+++ |||||||||+|||+|+.+|+||+||||
T Consensus 87 lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~QRvalARAL~~~P~llLLDEP 161 (356)
T PRK11650 87 LYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRE-----LSGGQRQRVAMGRAIVREPAVFLFDEP 161 (356)
T ss_pred ccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 345567777665321 23345556789999999999999998865 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|||||+.++..+.+.|+++.+..|.|+|+..|.+ .++.+++|+|++|.+|+++..|++++.
T Consensus 162 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 162 LSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 9999999999999999999876688999887755 578999999999999999999987644
No 425
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=4.2e-20 Score=196.49 Aligned_cols=109 Identities=26% Similarity=0.383 Sum_probs=100.6
Q ss_pred hhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCC
Q 001048 33 SLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDA 112 (1174)
Q Consensus 33 ~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~ 112 (1174)
.+.|++.|+.+|+.+.+|..+|+ |||||+|||-|||||+.+|++|+|||||+|+|+.++..+.+.|+++.++ |+
T Consensus 117 ~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~ 190 (254)
T COG1121 117 KEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GK 190 (254)
T ss_pred HHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CC
Confidence 46799999999999999999998 9999999999999999999999999999999999999999999999986 99
Q ss_pred EEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 113 TALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 113 tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
||++. ||--..+.+.||+|+.|+ ++++++|++++.
T Consensus 191 tIl~v-tHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 191 TVLMV-THDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred EEEEE-eCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99985 567778999999999995 678999988654
No 426
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=5.6e-20 Score=206.97 Aligned_cols=159 Identities=19% Similarity=0.249 Sum_probs=123.3
Q ss_pred chhhhcCCCCCc--------cHHHHHHHhh----hccchhhhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHH
Q 001048 5 KLEKLAGIFPDP--------DVDAYMKAIS----AEGLENSLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 5 ~~~~~~~~~~~~--------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
+.|+..|+++|. ++.+.+.... ..+.+..++++++++.+||. +..+..+. .||||||||++|
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----~LSgGqkqrvai 155 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPF-----ELSGGQMRRVAI 155 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcc-----cCCHHHHHHHHH
Confidence 456677877764 2223332111 12344456789999999996 45677664 499999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH--
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS-- 149 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~-- 149 (1174)
|++|+.+|+||+|||||+|||+.++..+.+.|+++.+ .|+|||++.|.+ ..+.+.+|+|++|.+|+++++|++++.
T Consensus 156 A~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 156 AGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999999999999999875 588999887765 567789999999999999999998765
Q ss_pred -HHHHhhCCCCCCCCCChhHHH
Q 001048 150 -CKFFEGCGFRCPDRKGVADFL 170 (1174)
Q Consensus 150 -~~yf~~~G~~~p~~~n~adfl 170 (1174)
.+++...|+.+|.....++.+
T Consensus 234 ~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 234 EVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred CHHHHHHcCCCCChHHHHHHHH
Confidence 344567788877655554433
No 427
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=4.4e-20 Score=202.37 Aligned_cols=137 Identities=22% Similarity=0.240 Sum_probs=111.4
Q ss_pred hhhhcCCCCCc-------cHHHHHHHhh-----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 6 LEKLAGIFPDP-------DVDAYMKAIS-----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 6 ~~~~~~~~~~~-------~v~~~~~~~~-----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
.|+..|++||. ++.+.+.... ..+.+..++++++++.+||.+..++.+++ |||||||||+||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~ia~ 149 (235)
T cd03261 75 LRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAE-----LSGGMKKRVALAR 149 (235)
T ss_pred HhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHH
Confidence 35566776663 5555554221 11223345688999999999888888865 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+|+.+|+||+|||||+|||+.++..+++.|+++++..|+|+|++.|.+. .+.+.+|+|++|.+|++++.|++++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 223 (235)
T cd03261 150 ALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEE 223 (235)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHH
Confidence 9999999999999999999999999999999998655789998877655 5778899999999999999998653
No 428
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.81 E-value=3.8e-20 Score=229.18 Aligned_cols=142 Identities=26% Similarity=0.337 Sum_probs=111.1
Q ss_pred ccchhhhcCCCCCccHH------HHHHHhhhccchhhhHHHHHHHHh-------CCcccccccccCCCcccCCccccchh
Q 001048 3 VIKLEKLAGIFPDPDVD------AYMKAISAEGLENSLQTDYILKIL-------GLDICADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 3 ~~~~~~~~~~~~~~~v~------~~~~~~~~~~~e~~~~v~~vl~~l-------gL~~~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
....|+..++.||+..+ +.++.-..+ -.++++.+.++.- .|.+..||.||+ .+..||||||||+
T Consensus 398 ~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~dt~vge-~G~~LSgGQrQrl 474 (567)
T COG1132 398 LDSLRKRIGIVSQDPLLFSGTIRENIALGRPD--ATDEEIEEALKLANAHEFIANLPDGYDTIVGE-RGVNLSGGQRQRL 474 (567)
T ss_pred HHHHHHhccEEcccceeecccHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhCcccccceecC-CCccCCHHHHHHH
Confidence 34568889999985544 455432211 1223344454433 345578999996 4455999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||++++||+||+||||||+||+.|+..|+++++++. .+||+++ ..||.++++.+|+|+||++|++++.|+|++.
T Consensus 475 aiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~ii--IaHRlsti~~aD~IiVl~~G~i~e~G~h~eL 550 (567)
T COG1132 475 AIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLI--IAHRLSTIKNADRIIVLDNGRIVERGTHEEL 550 (567)
T ss_pred HHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEE--EeccHhHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999876 3577776 3567789999999999999999999999876
Q ss_pred HH
Q 001048 150 CK 151 (1174)
Q Consensus 150 ~~ 151 (1174)
..
T Consensus 551 l~ 552 (567)
T COG1132 551 LA 552 (567)
T ss_pred HH
Confidence 54
No 429
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=8.2e-20 Score=205.55 Aligned_cols=152 Identities=23% Similarity=0.309 Sum_probs=118.3
Q ss_pred chhhhcCCCCCc--------cHHHHHHHhh----hccchhhhHHHHHHHHhCCc--ccccccccCCCcccCCccccchhH
Q 001048 5 KLEKLAGIFPDP--------DVDAYMKAIS----AEGLENSLQTDYILKILGLD--ICADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 5 ~~~~~~~~~~~~--------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~--~~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
+.|+..|++||. ++.+.+.... ..+.+..++++++++.+||. +..|+.+++ ||||||||++
T Consensus 80 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~-----LSgGq~qrv~ 154 (287)
T PRK13637 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFE-----LSGGQKRRVA 154 (287)
T ss_pred HHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCccc-----CCHHHHHHHH
Confidence 445677887774 2334333211 12334456789999999997 667877754 9999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
||++|+.+|+||+|||||+|||+.++..+++.|+++++..|+|||++.|.+ .++.+.+|+|++|++|++++.|++++..
T Consensus 155 iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 155 IAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999875688999887765 4677889999999999999999887653
Q ss_pred H---HHhhCCCCCCC
Q 001048 151 K---FFEGCGFRCPD 162 (1174)
Q Consensus 151 ~---yf~~~G~~~p~ 162 (1174)
+ .....|+.+|.
T Consensus 234 ~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 234 KEVETLESIGLAVPQ 248 (287)
T ss_pred hCHHHHHHcCCCCCh
Confidence 2 23345655543
No 430
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.80 E-value=8.9e-20 Score=209.77 Aligned_cols=133 Identities=20% Similarity=0.293 Sum_probs=113.2
Q ss_pred CCCCccHHHHHHHh-h---hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAI-S---AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~-~---~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+... . ..+.+.+++++++++.+||++..|....+ |||||||||+|||+|+.+|++|+||||
T Consensus 87 lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~-----LSgGq~QRvaLARaL~~~P~llLLDEP 161 (353)
T TIGR03265 87 LFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQ-----LSGGQQQRVALARALATSPGLLLLDEP 161 (353)
T ss_pred cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 44556777766532 1 12345567899999999999999988755 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||..++..+.+.|+++.+..+.|+|+..|.+ .++.+++|+|++|++|+++++|++++..
T Consensus 162 ~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 162 LSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999876688999887766 4889999999999999999999876543
No 431
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.80 E-value=1.1e-19 Score=209.17 Aligned_cols=132 Identities=20% Similarity=0.273 Sum_probs=111.9
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+.... ..+.+.+++++++++.+||++..|..+++ |||||||||+|||+|+.+|++|+||||
T Consensus 90 l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~-----LSgGq~QRvaLARAL~~~P~llLLDEP 164 (362)
T TIGR03258 90 LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQ-----LSGGMQQRIAIARAIAIEPDVLLLDEP 164 (362)
T ss_pred cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 456667777665321 22345566899999999999999998865 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhC-CCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHIT-DATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~-~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|||||+.++..+.+.|+++.+.. |.|+|++.|.+ .++.+++|+|++|.+|+++.+|++++.
T Consensus 165 ~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 165 LSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999998764 78888876654 467899999999999999999987654
No 432
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.80 E-value=1.2e-19 Score=208.14 Aligned_cols=133 Identities=21% Similarity=0.251 Sum_probs=111.4
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+.... ..+.+..++++++++.+||++..|...++ |||||||||+|||+|+.+|+||+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~-----LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDE-----LSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 344557776664322 12344566889999999999988988866 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+.++..+++.|+++.+..++|+|++.|.. .++.+++|+|++|.+|+++..|++++..
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999766688999877644 4578999999999999999999876543
No 433
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.2e-19 Score=208.21 Aligned_cols=133 Identities=23% Similarity=0.316 Sum_probs=113.0
Q ss_pred CCCCCccHHHHHHHh-h---hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeC
Q 001048 11 GIFPDPDVDAYMKAI-S---AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDE 86 (1174)
Q Consensus 11 ~~~~~~~v~~~~~~~-~---~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDE 86 (1174)
.+.|+.+|.+.+... . ..+.+.+++++++++.+||.+..|....+ |||||||||+|||+|+.+|+||+|||
T Consensus 88 ~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~-----LSgGq~QRVaLARaL~~~P~lLLLDE 162 (351)
T PRK11432 88 ALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQ-----ISGGQQQRVALARALILKPKVLLFDE 162 (351)
T ss_pred ccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 345666777766532 1 23455667899999999999988887755 99999999999999999999999999
Q ss_pred CCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 87 ISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 87 PTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
||||||+.++..+.+.|+++.+..|.|+|+..|.+ .++.+++|+|++|++|+++..|++++.
T Consensus 163 P~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~ 224 (351)
T PRK11432 163 PLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQEL 224 (351)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999876688998877655 578899999999999999999987654
No 434
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.80 E-value=1.1e-19 Score=208.03 Aligned_cols=140 Identities=24% Similarity=0.298 Sum_probs=115.6
Q ss_pred chhhhcCCCCCc-------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 5 KLEKLAGIFPDP-------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 5 ~~~~~~~~~~~~-------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
+.|+..|++||. ++.+.+.... ....+..++++++++.+||.+..|+.+++ ||||||||++||+
T Consensus 111 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~-----LS~G~kqrv~lA~ 185 (340)
T PRK13536 111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSD-----LSGGMKRRLTLAR 185 (340)
T ss_pred HHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhh-----CCHHHHHHHHHHH
Confidence 345667887763 4455554321 11223345678899999999999999976 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
+|+++|++|+|||||+|||+.++..+++.|+++++ .|+|||++.|.. .++-+.+|+|++|++|+++++|++++...
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999976 589999987755 47888999999999999999999876643
No 435
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=8.6e-20 Score=209.97 Aligned_cols=137 Identities=23% Similarity=0.302 Sum_probs=112.9
Q ss_pred hhhcCCCCC-------ccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHH
Q 001048 7 EKLAGIFPD-------PDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELI 75 (1174)
Q Consensus 7 ~~~~~~~~~-------~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aL 75 (1174)
|+..|++|| .++.+.+.... ..+.+..++++++++.+||.+..|+.+++ |||||||||+||++|
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qRv~lAraL 155 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQ-----LSGGQKQRVAIARAL 155 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHH
Confidence 556676665 35555554221 12233445789999999999988888765 999999999999999
Q ss_pred hcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 76 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 76 v~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+.+|+||+|||||+|||+.++..+++.|+++++..|+|+|++.|++. .+.+++|++++|.+|++++.|++++.
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~~ 228 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSEV 228 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999998766889999877664 67788999999999999999987654
No 436
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.4e-19 Score=205.65 Aligned_cols=151 Identities=19% Similarity=0.297 Sum_probs=115.8
Q ss_pred chhhhcCCCCCc--------cHHHHHHHhh----hccchhhhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHH
Q 001048 5 KLEKLAGIFPDP--------DVDAYMKAIS----AEGLENSLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 5 ~~~~~~~~~~~~--------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
+.|+..|+++|. ++.+.+.... .+..+..++++++++.+||. +..+..+.+ |||||||||+|
T Consensus 113 ~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGqkqRvai 187 (320)
T PRK13631 113 ELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG-----LSGGQKRRVAI 187 (320)
T ss_pred HHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCccc-----CCHHHHHHHHH
Confidence 456778887774 2323332111 12233345789999999997 556666544 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH-
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC- 150 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~- 150 (1174)
|++|+.+|+||+|||||+|||+.++..+++.|+++.+ .|+|+|++.|.+. .+.+.+|+|++|.+|++++.|++++..
T Consensus 188 AraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 188 AGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999875 5889988776544 567889999999999999999987542
Q ss_pred --HHHhhCCCCCCC
Q 001048 151 --KFFEGCGFRCPD 162 (1174)
Q Consensus 151 --~yf~~~G~~~p~ 162 (1174)
..+...|+.+|.
T Consensus 266 ~~~~~~~~~~~~p~ 279 (320)
T PRK13631 266 DQHIINSTSIQVPR 279 (320)
T ss_pred CHHHHHHcCCCCCh
Confidence 334455666554
No 437
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.79 E-value=8.2e-19 Score=174.43 Aligned_cols=206 Identities=23% Similarity=0.355 Sum_probs=149.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..+++.++.|.++. ..+++-|+|++++.|....++|.||||||||||+|+|..--+ .|.|.++|.+
T Consensus 12 ~aievsgl~f~y~~------------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~--~~~v~Vlgrs 77 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV------------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG--GGVVQVLGRS 77 (291)
T ss_pred ceEEEeccEEeccc------------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc--CCeEEEcCcC
Confidence 45888899887643 237899999999999999999999999999999999975422 3888999875
Q ss_pred CCc--------------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCccccc
Q 001048 652 KVQ--------------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL 717 (1174)
Q Consensus 652 ~~~--------------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 717 (1174)
.-. ..+.+..+.-- +-.+..+.++.+ +.|+.. ..+. ++-+++++.++++-.. +
T Consensus 78 aFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~-mifgV~-----g~dp----~Rre~LI~iLDIdl~W--R 144 (291)
T KOG2355|consen 78 AFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEH-MIFGVG-----GDDP----ERREKLIDILDIDLRW--R 144 (291)
T ss_pred ccccccccccCceeEecccccccccccc-cccccccccHHH-HHhhcc-----CCCh----hHhhhhhhheeccceE--E
Confidence 311 01222222222 112223556654 444421 1122 3445667767664322 1
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcce
Q 001048 718 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 718 ~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
. +.+|-|||+||.|+..|++.=++|+|||-|--||..++..+++.+++-.++ |.||+..||-.+ -+..-..++
T Consensus 145 m-----HkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD-GLe~Wpthl 218 (291)
T KOG2355|consen 145 M-----HKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD-GLETWPTHL 218 (291)
T ss_pred E-----eeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc-chhhcchhE
Confidence 1 359999999999999999999999999999999999999999999988764 999999999865 455556677
Q ss_pred eEEecCcEEEEEcCC
Q 001048 797 VLMKNGGRIIYFGPL 811 (1174)
Q Consensus 797 ~~l~~~G~~v~~G~~ 811 (1174)
+.+. +|+++-.-+.
T Consensus 219 ~yi~-~Gkl~~~l~~ 232 (291)
T KOG2355|consen 219 VYIK-SGKLVDNLKY 232 (291)
T ss_pred EEec-CCeeeecccc
Confidence 7775 6999875544
No 438
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.79 E-value=1.9e-19 Score=207.87 Aligned_cols=133 Identities=22% Similarity=0.271 Sum_probs=112.6
Q ss_pred CCCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeC
Q 001048 11 GIFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDE 86 (1174)
Q Consensus 11 ~~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDE 86 (1174)
.+.|+.+|.+.+.... ..+.+.+++++++++.+||++..|..+.. |||||||||+|||+|+.+|++|+|||
T Consensus 96 ~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~-----LSgGq~QRVaLARaL~~~P~llLLDE 170 (375)
T PRK09452 96 ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQ-----LSGGQQQRVAIARAVVNKPKVLLLDE 170 (375)
T ss_pred ccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4566677877665321 12334456789999999999999998855 99999999999999999999999999
Q ss_pred CCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 87 ISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 87 PTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
||||||..++..+.+.|+++.+..|.|+|+..|.+ .++.+++|+|++|.+|+++..|++++.
T Consensus 171 P~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i 232 (375)
T PRK09452 171 SLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREI 232 (375)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999876688888876654 578899999999999999999987654
No 439
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.79 E-value=1.1e-19 Score=229.83 Aligned_cols=138 Identities=20% Similarity=0.248 Sum_probs=112.2
Q ss_pred ccchhhhcCCCCCccH------HHHHHHhhhccchhhhHHHHHHHHhCCcc-------cccccccCCCcccCCccccchh
Q 001048 3 VIKLEKLAGIFPDPDV------DAYMKAISAEGLENSLQTDYILKILGLDI-------CADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 3 ~~~~~~~~~~~~~~~v------~~~~~~~~~~~~e~~~~v~~vl~~lgL~~-------~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
....|+..|++||+.. .+.+..-.. -.++++.+.++..||.+ ..||.+|+. ++.||||||||+
T Consensus 522 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~---~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSGGQrQRi 597 (686)
T TIGR03797 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAP---LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSGGQRQRL 597 (686)
T ss_pred HHHHHhccEEEccCCccCcccHHHHHhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHH
Confidence 3467889999999654 355543211 23345778888888764 468999984 456999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||||+++|+||+||||||+||+.++.++++.|+++ ++|+|+..| +.++++.+|+|++|++|+++++|++++.
T Consensus 598 alARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItH--r~~~i~~~D~Iivl~~G~iv~~G~~~~L 671 (686)
T TIGR03797 598 LIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAH--RLSTIRNADRIYVLDAGRVVQQGTYDEL 671 (686)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEec--ChHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999885 467777656 4588999999999999999999998765
Q ss_pred H
Q 001048 150 C 150 (1174)
Q Consensus 150 ~ 150 (1174)
.
T Consensus 672 l 672 (686)
T TIGR03797 672 M 672 (686)
T ss_pred H
Confidence 4
No 440
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.79 E-value=2.5e-19 Score=206.00 Aligned_cols=131 Identities=21% Similarity=0.271 Sum_probs=109.8
Q ss_pred CCCccHHHHHHHhh--------hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeee
Q 001048 13 FPDPDVDAYMKAIS--------AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFM 84 (1174)
Q Consensus 13 ~~~~~v~~~~~~~~--------~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~L 84 (1174)
.|+.++.+.+.... ..+.+..++++++++.+||++..|..+.+ |||||||||+|||+|+.+|++|+|
T Consensus 86 ~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgGq~QRvalArAL~~~P~llLL 160 (353)
T PRK10851 86 FRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQ-----LSGGQKQRVALARALAVEPQILLL 160 (353)
T ss_pred CCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44456666665321 12334456889999999999999988865 999999999999999999999999
Q ss_pred eCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 85 DEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 85 DEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
||||||||+.++..+.+.|+++.+..+.|+|+..| ...++.+++|+|++|++|++++.|++++.
T Consensus 161 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTH-d~~ea~~~~Dri~vl~~G~i~~~g~~~~i 224 (353)
T PRK10851 161 DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTH-DQEEAMEVADRVVVMSQGNIEQAGTPDQV 224 (353)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999998766888887655 44688899999999999999999987654
No 441
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.9e-19 Score=202.54 Aligned_cols=139 Identities=22% Similarity=0.213 Sum_probs=113.1
Q ss_pred chhhhcCCCCCc--------cHHHHHHHhh----hccchhhhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHH
Q 001048 5 KLEKLAGIFPDP--------DVDAYMKAIS----AEGLENSLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 5 ~~~~~~~~~~~~--------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
+.|+..|++||. ++.+.+.... ..+.+..++++++++.+||. +..|+.+.+ |||||||||+|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq~qrv~l 156 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQ-----MSGGQMRKIAI 156 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCccc-----CCHHHHHHHHH
Confidence 457788988884 2333333211 12334456789999999997 678887754 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|++|+.+|+||+|||||+|||+.++..+.+.|+++.+..|+|+|++.|.+. .+.+.+|+|++|++|++++.|++++.
T Consensus 157 araL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~ 233 (286)
T PRK13646 157 VSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKEL 233 (286)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999997656889998877555 57788999999999999999987653
No 442
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=2.8e-19 Score=199.60 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=100.6
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||.+..|+.+++ |||||||||+||++|+.+|+||+|||||+|||..++..+.+.|+++++..|
T Consensus 137 ~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g 211 (269)
T cd03294 137 REERAAEALELVGLEGWEHKYPDE-----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ 211 (269)
T ss_pred HHHHHHHHHHHcCCHhHhhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 345688999999999989998866 999999999999999999999999999999999999999999999986568
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|+|++.|.+. ++.+.+|++++|.+|+++++|++++.
T Consensus 212 ~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 212 KTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred CEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 89998887654 57788999999999999999987543
No 443
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.5e-19 Score=201.36 Aligned_cols=151 Identities=23% Similarity=0.258 Sum_probs=117.3
Q ss_pred chhhhcCCCCCcc--------HHHHHHHh----hhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHH
Q 001048 5 KLEKLAGIFPDPD--------VDAYMKAI----SAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 5 ~~~~~~~~~~~~~--------v~~~~~~~----~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
+.|+..|++||.. +.+.+... .....+..++++++++.+||.+..|+.+++ ||||||||++||
T Consensus 79 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrl~la 153 (283)
T PRK13636 79 KLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHC-----LSFGQKKRVAIA 153 (283)
T ss_pred HHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCccc-----CCHHHHHHHHHH
Confidence 4566788877742 22333221 112333345789999999999988888866 999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH-
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK- 151 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~- 151 (1174)
++|+.+|+||+|||||+|||+.++..+.+.|+++++..|+|+|++.|.+. .+.+.+|++++|.+|++++.|++++...
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999998755889998876554 4567899999999999999999876432
Q ss_pred --HHhhCCCCCC
Q 001048 152 --FFEGCGFRCP 161 (1174)
Q Consensus 152 --yf~~~G~~~p 161 (1174)
.....|..+|
T Consensus 233 ~~~~~~~~~~~~ 244 (283)
T PRK13636 233 KEMLRKVNLRLP 244 (283)
T ss_pred HHHHHHcCCCCC
Confidence 2334454443
No 444
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.7e-19 Score=206.81 Aligned_cols=139 Identities=22% Similarity=0.298 Sum_probs=113.7
Q ss_pred chhhhcCCCCCcc------HHHHHHHhhhccchhhhHHHHHHHHhCCcc------cccccccCCCcccCCccccchhHHH
Q 001048 5 KLEKLAGIFPDPD------VDAYMKAISAEGLENSLQTDYILKILGLDI------CADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 5 ~~~~~~~~~~~~~------v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~------~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
.-||.+...||+- +.+.+...... -.++++.++++.-||.+ ..||.+|+ .++||||||+|||++|
T Consensus 392 ~~~k~i~~v~Q~p~lf~gTireNi~l~~~~--~s~e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLA 468 (559)
T COG4988 392 AWRKQISWVSQNPYLFAGTIRENILLARPD--ASDEEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALA 468 (559)
T ss_pred HHHhHeeeeCCCCccccccHHHHhhccCCc--CCHHHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHH
Confidence 4567788878743 33555433322 22346788888888865 45899998 5678999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||+++++++++||||++||..||..|++.|.++++ ++|+++.. |+......+|+|++|++|+++++|.+++..
T Consensus 469 RAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~it--Hrl~~~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 469 RALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVIT--HRLEDAADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred HHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEE--cChHHHhcCCEEEEecCCceeccCCHHHHh
Confidence 999999999999999999999999999999999986 47777644 588899999999999999999999987654
No 445
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=4e-19 Score=195.76 Aligned_cols=112 Identities=23% Similarity=0.348 Sum_probs=99.6
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||.+..++.+++ |||||||||+||++|+.+|+||+|||||+|||+.++..+.+.|+++++..|
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 195 (241)
T cd03256 121 EKQRALAALERVGLLDKAYQRADQ-----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG 195 (241)
T ss_pred HHHHHHHHHHHcCChhhhCCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 345688999999999888887755 999999999999999999999999999999999999999999999986568
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|+|++.|.+. ++.+.+|++++|.+|++++.|++++.
T Consensus 196 ~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 196 ITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHHh
Confidence 89998877665 57779999999999999999987543
No 446
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.2e-19 Score=203.79 Aligned_cols=139 Identities=20% Similarity=0.328 Sum_probs=113.4
Q ss_pred hhhhcCCCCC------ccHHHHHHHhhhccchhhhHHHHHHHHhCCcc-------cccccccCCCcccCCccccchhHHH
Q 001048 6 LEKLAGIFPD------PDVDAYMKAISAEGLENSLQTDYILKILGLDI-------CADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 6 ~~~~~~~~~~------~~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~-------~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
.|+...+.+| .++...++...++ -..+.+-++++..||+| ..||.+|+ .+++||||||||++||
T Consensus 410 ~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~--AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlA 486 (573)
T COG4987 410 LRETISVLTQRVHLFSGTLRDNLRLANPD--ASDEELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALA 486 (573)
T ss_pred HHHHHhhhccchHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHH
Confidence 5677888887 4455666654433 23345778899998876 45778998 5677999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
|+|++|.++++|||||.|||+.+|.+|++.|..-+ +|+|+|+-.| +..-.+.||||++|.+|++++.|.+++...
T Consensus 487 R~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTH--rL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 487 RALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTH--RLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEec--ccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 99999999999999999999999999999999865 5889997554 556678999999999999999999876543
No 447
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=3.2e-19 Score=206.51 Aligned_cols=133 Identities=17% Similarity=0.238 Sum_probs=112.2
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
++|+.+|.+.+.... ..+.+..++++++++.+||.+..|..+.+ |||||||||+|||+|+.+|++|+||||
T Consensus 102 lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~-----LSgGq~QRVaLARAL~~~P~lLLLDEP 176 (377)
T PRK11607 102 LFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQ-----LSGGQRQRVALARSLAKRPKLLLLDEP 176 (377)
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 455567777775321 12344566789999999999988888755 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||..++..+.+.|+++.++.|.|+|+..|.+. ++.+++|+|++|.+|+++..|++++..
T Consensus 177 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 177 MGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999999999987766889998777544 788999999999999999999876543
No 448
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=3.2e-19 Score=200.29 Aligned_cols=138 Identities=22% Similarity=0.211 Sum_probs=112.8
Q ss_pred chhhhcCCCCCcc--------HHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHH
Q 001048 5 KLEKLAGIFPDPD--------VDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 5 ~~~~~~~~~~~~~--------v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
+.|+..|++||.. +.+.+.... ..+.+..++++++++.+||++..++.+++ ||||||||++||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrv~la 156 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHL-----LSGGQKQRVAIA 156 (280)
T ss_pred HHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCccc-----CCHHHHHHHHHH
Confidence 3467788888753 222222111 12333456789999999999999998865 999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
++|+.+|++|+|||||+|||+.++..+.+.|+++++..|+|+|++.|.+.. + ..+|++++|++|+++++|++++.
T Consensus 157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-A-VEADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-H-hcCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999976568899998888875 3 34999999999999999998764
No 449
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.6e-19 Score=206.53 Aligned_cols=131 Identities=21% Similarity=0.283 Sum_probs=109.7
Q ss_pred CCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCC
Q 001048 13 FPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEIS 88 (1174)
Q Consensus 13 ~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPT 88 (1174)
.|+.++.+.+.... ..+.+..++++++++.+||++..|..+++ |||||||||+||++|+.+|++|+|||||
T Consensus 87 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~-----LSgGq~QRvaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 87 YPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred CCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 34456666654321 12234456789999999999988988865 9999999999999999999999999999
Q ss_pred CCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 89 NGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 89 SGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
||||..++..+.+.|+++.+..|.|+|++.|.+. ++.+++|+|++|.+|++++.|++++.
T Consensus 162 s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999998766889998877664 78899999999999999999987644
No 450
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.78 E-value=2.5e-19 Score=221.40 Aligned_cols=141 Identities=21% Similarity=0.308 Sum_probs=115.5
Q ss_pred cchhhhcCCCCCccHH------HHHHHhhhccchhhhHHHHHHHHhCCcc------cccccccCCCcccCCccccchhHH
Q 001048 4 IKLEKLAGIFPDPDVD------AYMKAISAEGLENSLQTDYILKILGLDI------CADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 4 ~~~~~~~~~~~~~~v~------~~~~~~~~~~~e~~~~v~~vl~~lgL~~------~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
...|+..|++||+... +.++.... ...++++++.++..||.+ ..||.||+. ++.||||||||++|
T Consensus 410 ~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~--~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~-g~~LSgGqrqRial 486 (574)
T PRK11160 410 AALRQAISVVSQRVHLFSATLRDNLLLAAP--NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEG-GRQLSGGEQRRLGI 486 (574)
T ss_pred HHHHhheeEEcccchhhcccHHHHhhcCCC--ccCHHHHHHHHHHcCCHHHHcCccccCchhcCC-CCCCCHHHHHHHHH
Confidence 4567889999986544 44433211 223456888999999975 368999984 45599999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
||+|+++|+||+||||||+||+.++..+++.|++.. .++|+|+..|++ ++.+.+|+|++|++|++++.|+|++..+
T Consensus 487 ARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~--~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 487 ARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRL--TGLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCh--hHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999999975 478888877766 5678899999999999999999876543
No 451
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.78 E-value=2.7e-19 Score=195.07 Aligned_cols=137 Identities=20% Similarity=0.231 Sum_probs=108.4
Q ss_pred hhhhcCCCCCc------cHHHHHHHhh-hc----cchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHH
Q 001048 6 LEKLAGIFPDP------DVDAYMKAIS-AE----GLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGEL 74 (1174)
Q Consensus 6 ~~~~~~~~~~~------~v~~~~~~~~-~~----~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~a 74 (1174)
.|+..|++||. ++.+.+.... .. ..+..++++++++.+||.+..+..+. .+.||||||||++||++
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~a 155 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARA 155 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHH
Confidence 45667887775 3444443211 11 11234568899999999987777641 13499999999999999
Q ss_pred HhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 75 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 75 Lv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
|+.+|++|+|||||+|||+.++..+++.|+++++. +|+|++.|.+. .+.+.+|++++|.+|++++.|++++
T Consensus 156 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999999999999999999999999999999763 78888877654 6778899999999999999998653
No 452
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.78 E-value=3.3e-19 Score=202.08 Aligned_cols=138 Identities=23% Similarity=0.400 Sum_probs=113.5
Q ss_pred hhhhcCCCCCc-------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHH
Q 001048 6 LEKLAGIFPDP-------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGEL 74 (1174)
Q Consensus 6 ~~~~~~~~~~~-------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~a 74 (1174)
.|+..|++||. ++.+.+.... ..+.+..++++++++.+||.+..|+.+++ ||||||||++||++
T Consensus 73 ~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~la~a 147 (301)
T TIGR03522 73 VQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQA 147 (301)
T ss_pred HHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhh-----CCHHHHHHHHHHHH
Confidence 45667777763 4555554322 12233345789999999999999998865 99999999999999
Q ss_pred HhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 75 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 75 Lv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
|+++|++|+|||||+|||+.+...+++.|+++++ ++|+|++.|.+. ++-+++|+|++|.+|++++.|+.++..+
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999863 688888876554 7888999999999999999999876544
No 453
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=5.5e-19 Score=197.61 Aligned_cols=136 Identities=19% Similarity=0.184 Sum_probs=109.8
Q ss_pred hhhhcCCCCCc--------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 6 LEKLAGIFPDP--------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 6 ~~~~~~~~~~~--------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
+++..|+.||+ ++.+.+.... ..+.+..++++++++.+||.+..|..+++ |||||||||+||+
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgG~~qrv~lar 151 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYH-----LSYGQKKRVAIAG 151 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhh-----CCHHHHHHHHHHH
Confidence 45567877774 3334443211 11223345689999999999988998865 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+|+++|++|+|||||+|||+.++..+++.|+++++ .|+|+|++.|.+. .+.+.+|+|++|++|++++.|+++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSL 224 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999976 4889998777543 5668899999999999999998754
No 454
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.6e-19 Score=201.19 Aligned_cols=151 Identities=19% Similarity=0.282 Sum_probs=116.2
Q ss_pred chhhhcCCCCCc--------cHHHHHHHh----hhccchhhhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHH
Q 001048 5 KLEKLAGIFPDP--------DVDAYMKAI----SAEGLENSLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 5 ~~~~~~~~~~~~--------~v~~~~~~~----~~~~~e~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
+.|+..|+++|. +|.+.+... ...+++..++++++++.+||. +-.|..+.+ |||||||||+|
T Consensus 102 ~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGqkqrval 176 (305)
T PRK13651 102 EIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFE-----LSGGQKRRVAL 176 (305)
T ss_pred HHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhh-----CCHHHHHHHHH
Confidence 456678888874 333333311 122334456789999999997 667877755 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH-
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC- 150 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~- 150 (1174)
|++|+.+|+||+|||||+|||+.++..+++.|+++.+ .|+|||+..|. ...+.+.+|+|++|.+|++++.|++++..
T Consensus 177 A~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd-~~~~~~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 177 AGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHD-LDNVLEWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeC-HHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999999975 58898887654 34677899999999999999999986642
Q ss_pred --HHHhhCCCCCCC
Q 001048 151 --KFFEGCGFRCPD 162 (1174)
Q Consensus 151 --~yf~~~G~~~p~ 162 (1174)
+.....|...|.
T Consensus 255 ~~~~~~~~~~~~p~ 268 (305)
T PRK13651 255 DNKFLIENNMEPPK 268 (305)
T ss_pred CHHHHHHCCCCCCh
Confidence 223344555443
No 455
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.8e-19 Score=199.45 Aligned_cols=138 Identities=16% Similarity=0.204 Sum_probs=112.2
Q ss_pred chhhhcCCCCCc--------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHH
Q 001048 5 KLEKLAGIFPDP--------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 5 ~~~~~~~~~~~~--------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
++|+..|+++|. ++.+.+.... ..+.+..++++++++.+||++..|..+++ ||||||||++||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qrv~lA 152 (279)
T PRK13650 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPAR-----LSGGQKQRVAIA 152 (279)
T ss_pred HHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCccc-----CCHHHHHHHHHH
Confidence 345667877774 2334443211 12333445789999999999988888865 999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
++|+.+|+||+|||||+|||+.++..+++.|+++++..|+|+|++.|.+.. + ..+|+|++|.+|+++..|++++.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~G~i~~~g~~~~~ 227 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKNGQVESTSTPREL 227 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999987568999998888653 4 57999999999999999987654
No 456
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.78 E-value=2.5e-19 Score=227.74 Aligned_cols=140 Identities=19% Similarity=0.182 Sum_probs=113.0
Q ss_pred ccchhhhcCCCCCccHH------HHHHHhhhccchhhhHHHHHHHHhCCcc-------cccccccCCCcccCCccccchh
Q 001048 3 VIKLEKLAGIFPDPDVD------AYMKAISAEGLENSLQTDYILKILGLDI-------CADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 3 ~~~~~~~~~~~~~~~v~------~~~~~~~~~~~e~~~~v~~vl~~lgL~~-------~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
.+..|+..|++||+... +.+.... ....++++.+.++..||.+ ..||.+|+. ++.||||||||+
T Consensus 548 ~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~--~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~-G~~LSGGQrQRi 624 (710)
T TIGR03796 548 REVLANSVAMVDQDIFLFEGTVRDNLTLWD--PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEG-GANLSGGQRQRL 624 (710)
T ss_pred HHHHHhheeEEecCChhhhccHHHHhhCCC--CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccC-CCCCCHHHHHHH
Confidence 34578999999996544 4443221 1223445777888877654 568999974 456999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||+|+++|+||+||||||+||+.++..+.+.|++ .++|+|+..| +.++++.+|+|++|++|+++++|++++.
T Consensus 625 aLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitH--rl~~i~~~D~Iivl~~G~i~~~G~~~~L 698 (710)
T TIGR03796 625 EIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAH--RLSTIRDCDEIIVLERGKVVQRGTHEEL 698 (710)
T ss_pred HHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEec--CHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 999999999999999999999999999999999986 3678887655 5578899999999999999999999876
Q ss_pred HH
Q 001048 150 CK 151 (1174)
Q Consensus 150 ~~ 151 (1174)
.+
T Consensus 699 l~ 700 (710)
T TIGR03796 699 WA 700 (710)
T ss_pred HH
Confidence 54
No 457
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=5.1e-19 Score=194.42 Aligned_cols=110 Identities=24% Similarity=0.377 Sum_probs=99.1
Q ss_pred hhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCC
Q 001048 33 SLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDA 112 (1174)
Q Consensus 33 ~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~ 112 (1174)
.++++++++.+||.+..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..|+
T Consensus 114 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 188 (239)
T cd03296 114 RAKVHELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188 (239)
T ss_pred HHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC
Confidence 45678999999999888888865 9999999999999999999999999999999999999999999999865588
Q ss_pred EEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 113 TALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 113 tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
|+|++.|++ .++.+.+|++++|.+|++++.|++++
T Consensus 189 tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (239)
T cd03296 189 TTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDE 223 (239)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHH
Confidence 999888876 46778899999999999999998654
No 458
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.78 E-value=4.8e-19 Score=201.07 Aligned_cols=138 Identities=23% Similarity=0.285 Sum_probs=113.1
Q ss_pred hhhhcCCCCCc-------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHH
Q 001048 6 LEKLAGIFPDP-------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGEL 74 (1174)
Q Consensus 6 ~~~~~~~~~~~-------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~a 74 (1174)
.|+..|++||. ++.+.+.... ....+..++++++++.+||.+..|+.+++ |||||||||+||++
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~-----LSgG~~qrv~la~a 149 (303)
T TIGR01288 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVAL-----LSGGMKRRLTLARA 149 (303)
T ss_pred HhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhh-----CCHHHHHHHHHHHH
Confidence 35667776663 4555554211 11223345678899999999999999866 99999999999999
Q ss_pred HhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 75 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 75 Lv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|+|++.|.+. ++.+.+|+|++|.+|++++.|++++..
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 223 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALI 223 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999976 5889999877664 777889999999999999999987654
No 459
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=4.2e-19 Score=191.57 Aligned_cols=107 Identities=24% Similarity=0.347 Sum_probs=96.0
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||.+..|+.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++..|
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 181 (213)
T cd03259 107 IRARVRELLELVGLEGLLNRYPHE-----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELG 181 (213)
T ss_pred HHHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 345688999999999988888865 999999999999999999999999999999999999999999999986558
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeC
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G 144 (1174)
+|+|++.|.+. .+.+.+|++++|.+|++++.|
T Consensus 182 ~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 182 ITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 89998777554 677889999999999999876
No 460
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=3.3e-19 Score=193.33 Aligned_cols=111 Identities=28% Similarity=0.408 Sum_probs=98.9
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||++..|+.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+
T Consensus 108 ~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 182 (220)
T cd03265 108 RRERIDELLDFVGLLEAADRLVKT-----YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG 182 (220)
T ss_pred HHHHHHHHHHHcCCHHHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcC
Confidence 345689999999999988998866 999999999999999999999999999999999999999999999986557
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+|+|++.|.+. ++.+.+|++++|.+|++++.|++++
T Consensus 183 ~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 183 MTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHH
Confidence 88888766544 6778899999999999999997643
No 461
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.78 E-value=3.5e-19 Score=225.62 Aligned_cols=142 Identities=20% Similarity=0.312 Sum_probs=114.2
Q ss_pred ccchhhhcCCCCCccHH------HHHHHhhhccchhhhHHHHHHHHhCCc-------ccccccccCCCcccCCccccchh
Q 001048 3 VIKLEKLAGIFPDPDVD------AYMKAISAEGLENSLQTDYILKILGLD-------ICADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 3 ~~~~~~~~~~~~~~~v~------~~~~~~~~~~~e~~~~v~~vl~~lgL~-------~~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
....|+..|++||+... +.+..... .-.++++.+.++..||. +..||.+|+. +..||||||||+
T Consensus 534 ~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~-G~~LSgGQrQRl 610 (694)
T TIGR03375 534 PADLRRNIGYVPQDPRLFYGTLRDNIALGAP--YADDEEILRAAELAGVTEFVRRHPDGLDMQIGER-GRSLSGGQRQAV 610 (694)
T ss_pred HHHHHhccEEECCChhhhhhhHHHHHhCCCC--CCCHHHHHHHHHHcChHHHHHhCcccccceecCC-CCCCCHHHHHHH
Confidence 34578899999997554 45542211 12234567777777764 4579999983 455999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||+|+++|+||+||||||+||+.++..+++.|+++. .++|+|+..|++ ++.+.+|+|++|++|+++++|+|++.
T Consensus 611 alARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl--~~~~~~D~iivl~~G~i~e~G~~~eL 686 (694)
T TIGR03375 611 ALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRT--SLLDLVDRIIVMDNGRIVADGPKDQV 686 (694)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCH--HHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999976 367888766655 68899999999999999999999876
Q ss_pred HH
Q 001048 150 CK 151 (1174)
Q Consensus 150 ~~ 151 (1174)
.+
T Consensus 687 l~ 688 (694)
T TIGR03375 687 LE 688 (694)
T ss_pred HH
Confidence 54
No 462
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.78 E-value=4.6e-19 Score=193.28 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=106.3
Q ss_pred CCCccHHHHHHHhh------hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeC
Q 001048 13 FPDPDVDAYMKAIS------AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDE 86 (1174)
Q Consensus 13 ~~~~~v~~~~~~~~------~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDE 86 (1174)
.++.++.+.+.... ..+.+..++++++++.+||++..++.+++ ||||||||++||++|+.+|++|+|||
T Consensus 66 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDE 140 (230)
T TIGR01184 66 LPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLLDE 140 (230)
T ss_pred CCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 34446666554321 11223345678999999999988888765 99999999999999999999999999
Q ss_pred CCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcc
Q 001048 87 ISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLS 147 (1174)
Q Consensus 87 PTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~ 147 (1174)
||+|||+.++..+.+.|+++++..|+|+|++.|.+. ++.+.+|++++|.+|++++.|+..
T Consensus 141 Pt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 141 PFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCce
Confidence 999999999999999999988656889998877654 677889999999999999999753
No 463
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.78 E-value=5.6e-19 Score=201.92 Aligned_cols=131 Identities=23% Similarity=0.245 Sum_probs=109.4
Q ss_pred CCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCC
Q 001048 13 FPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEIS 88 (1174)
Q Consensus 13 ~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPT 88 (1174)
.|+.++.+.+.... ..+.+..++++++++.+||++..|..+.+ |||||||||+||++|+.+|++|+|||||
T Consensus 54 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qRvalaraL~~~p~lllLDEP~ 128 (325)
T TIGR01187 54 FPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQ-----LSGGQQQRVALARALVFKPKILLLDEPL 128 (325)
T ss_pred cCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 34446666655321 12233445789999999999988888755 9999999999999999999999999999
Q ss_pred CCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 89 NGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 89 SGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||+.++..+.+.|+++.+..|+|+|++.|.+ .++.+++|+|++|.+|++++.|++++.
T Consensus 129 s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~ 188 (325)
T TIGR01187 129 SALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEI 188 (325)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999876688999887765 478899999999999999999987654
No 464
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.78 E-value=4.6e-19 Score=220.78 Aligned_cols=140 Identities=20% Similarity=0.162 Sum_probs=114.8
Q ss_pred ccchhhhcCCCCCccHH------HHHHHhhhccchhhhHHHHHHHHhCCcc-------cccccccCCCcccCCccccchh
Q 001048 3 VIKLEKLAGIFPDPDVD------AYMKAISAEGLENSLQTDYILKILGLDI-------CADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 3 ~~~~~~~~~~~~~~~v~------~~~~~~~~~~~e~~~~v~~vl~~lgL~~-------~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
.+..|+..+++||+..+ +.+..- +...+++++++++..||.+ ..||.+|+ .+..||||||||+
T Consensus 410 ~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~---~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRi 485 (592)
T PRK10790 410 HSVLRQGVAMVQQDPVVLADTFLANVTLG---RDISEEQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLL 485 (592)
T ss_pred HHHHHhheEEEccCCccccchHHHHHHhC---CCCCHHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHH
Confidence 34668889999996544 444432 2223446888999998664 56899998 3445999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||+|+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|+..|+| ++.+.+|+|++|++|++++.|++++.
T Consensus 486 alARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G~~~~L 561 (592)
T PRK10790 486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTILVLHRGQAVEQGTHQQL 561 (592)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998753 67888776766 77889999999999999999999766
Q ss_pred H
Q 001048 150 C 150 (1174)
Q Consensus 150 ~ 150 (1174)
.
T Consensus 562 ~ 562 (592)
T PRK10790 562 L 562 (592)
T ss_pred H
Confidence 4
No 465
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=4.2e-19 Score=202.52 Aligned_cols=116 Identities=19% Similarity=0.213 Sum_probs=99.7
Q ss_pred cchhhhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHh
Q 001048 29 GLENSLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLV 107 (1174)
Q Consensus 29 ~~e~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la 107 (1174)
+.+..+++.++|+.+||. +..|..+++ |||||||||+||+||+.+|++|++||||+|||..++..|++.|+++.
T Consensus 127 ~~~~~~~~~~~l~~~gL~~~~~~~~p~~-----LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~ 201 (327)
T PRK11308 127 AAERREKALAMMAKVGLRPEHYDRYPHM-----FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQ 201 (327)
T ss_pred HHHHHHHHHHHHHHCCCChHHhcCCCcc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 344556789999999996 466777654 99999999999999999999999999999999999999999999998
Q ss_pred HhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 108 HITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 108 ~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
+..|.|+|+..|. ...+.+.+|+|++|++|++++.|+.++..
T Consensus 202 ~~~g~til~iTHd-l~~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 202 QELGLSYVFISHD-LSVVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred HHcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 7668888876553 44556789999999999999999976553
No 466
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.78 E-value=5.4e-19 Score=194.91 Aligned_cols=111 Identities=24% Similarity=0.324 Sum_probs=98.9
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||.+..|..+++ |||||||||+||++|+.+|+||+|||||+|||+.++..+.+.|+++++..+
T Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 196 (243)
T TIGR02315 122 DKERALSALERVGLADKAYQRADQ-----LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDG 196 (243)
T ss_pred HHHHHHHHHHHcCcHhhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 345688999999999888887755 999999999999999999999999999999999999999999999876557
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+|+|++.|++. .+.+.+|++++|.+|++++.|++++
T Consensus 197 ~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (243)
T TIGR02315 197 ITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSE 232 (243)
T ss_pred CEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHH
Confidence 89998877665 5678899999999999999998653
No 467
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.78 E-value=3.9e-19 Score=206.36 Aligned_cols=138 Identities=20% Similarity=0.324 Sum_probs=112.3
Q ss_pred chhhhcCCCCCc-------cHHHHHHHhh------hc--cchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchh
Q 001048 5 KLEKLAGIFPDP-------DVDAYMKAIS------AE--GLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 5 ~~~~~~~~~~~~-------~v~~~~~~~~------~~--~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
+.++.+|++||. ++.+.+.... .. ..+..++++++++.+||.+..|..+++ |||||||||
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~-----LSgGerQRv 148 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTS-----LSGGERQRV 148 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHH
Confidence 445667887773 3444443211 01 233445789999999999999998865 999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+||++|+.+|+||+|||||+|||+.+..++++.|+++++ .++|+|++.|. ..++.+.+|++++|++|++++.|++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHd-l~~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHD-LDLAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECC-HHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999986 58899998765 4467789999999999999999987643
No 468
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.7e-19 Score=203.04 Aligned_cols=115 Identities=20% Similarity=0.231 Sum_probs=98.9
Q ss_pred chhhhHHHHHHHHhCCcc---cccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHH
Q 001048 30 LENSLQTDYILKILGLDI---CADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHL 106 (1174)
Q Consensus 30 ~e~~~~v~~vl~~lgL~~---~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~l 106 (1174)
.+..++++++|+.+||.+ ..|... +.|||||||||+||++|+.+|++|++||||||||..++.++++.|+++
T Consensus 125 ~~~~~~~~~~L~~~gL~~~~~~l~~~p-----~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l 199 (326)
T PRK11022 125 KTRRQRAIDLLNQVGIPDPASRLDVYP-----HQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLEL 199 (326)
T ss_pred HHHHHHHHHHHHHCCCCChHHHHhCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 445567899999999975 345544 449999999999999999999999999999999999999999999999
Q ss_pred hHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 107 VHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 107 a~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
.+..|.|+|+..|... .+.+.+|+|++|.+|++++.|+.++..
T Consensus 200 ~~~~g~til~iTHdl~-~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 200 QQKENMALVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred HHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 8767889998766544 566789999999999999999976553
No 469
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=6.6e-19 Score=204.37 Aligned_cols=136 Identities=19% Similarity=0.173 Sum_probs=112.1
Q ss_pred hhcCCCCC-------ccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHh
Q 001048 8 KLAGIFPD-------PDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIV 76 (1174)
Q Consensus 8 ~~~~~~~~-------~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv 76 (1174)
+..|+++| .++.+.+.... ..+.+..++++++++.+||.+..|..+.+ |||||||||+||++|+
T Consensus 106 ~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~-----LSgGq~QRv~LArAL~ 180 (400)
T PRK10070 106 KKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDE-----LSGGMRQRVGLARALA 180 (400)
T ss_pred CCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCccc-----CCHHHHHHHHHHHHHh
Confidence 34665554 46666554321 12234456789999999999988888865 9999999999999999
Q ss_pred cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 77 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 77 ~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
.+|+||+|||||+|||+.++..+++.|+++.+..++|+|++.|.+ .++.+++|+|++|.+|++++.|++++.
T Consensus 181 ~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l 252 (400)
T PRK10070 181 INPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEI 252 (400)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHH
Confidence 999999999999999999999999999999765688999887765 467889999999999999999987654
No 470
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.78 E-value=6.1e-19 Score=193.60 Aligned_cols=110 Identities=23% Similarity=0.375 Sum_probs=98.8
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..+.++++++.+||++..|+.+++ |||||||||+||++|+.+|++|+|||||+|||..++..+++.|+++++ .|
T Consensus 120 ~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ 193 (236)
T cd03219 120 ARERAEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RG 193 (236)
T ss_pred HHHHHHHHHHHcCccchhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC
Confidence 345689999999999888888765 999999999999999999999999999999999999999999999876 58
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+|+|++.|.+. ++.+.+|++++|.+|++++.|++++
T Consensus 194 ~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (236)
T cd03219 194 ITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDE 229 (236)
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHH
Confidence 89998877655 6778899999999999999998754
No 471
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=8e-19 Score=196.77 Aligned_cols=112 Identities=27% Similarity=0.386 Sum_probs=100.9
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..|
T Consensus 114 ~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g 188 (277)
T PRK13652 114 VAHRVSSALHMLGLEELRDRVPHH-----LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYG 188 (277)
T ss_pred HHHHHHHHHHHCCChhHhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 345689999999999988998865 999999999999999999999999999999999999999999999986558
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|+|++.|++. ++.+.+|++++|.+|++++.|++++.
T Consensus 189 ~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~~ 225 (277)
T PRK13652 189 MTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEEI 225 (277)
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHHH
Confidence 89998877655 67789999999999999999988665
No 472
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.77 E-value=7.3e-19 Score=190.62 Aligned_cols=118 Identities=21% Similarity=0.289 Sum_probs=100.8
Q ss_pred cchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhH
Q 001048 29 GLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVH 108 (1174)
Q Consensus 29 ~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~ 108 (1174)
++|..+++.++|+.+||.+... +-+.+...|||||||||.||.||..+|++|+.||||||||.....+|++.|+++.+
T Consensus 124 ~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~ 201 (316)
T COG0444 124 KKEAKERAIELLELVGIPDPER--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR 201 (316)
T ss_pred hHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4555667889999999997532 22335677999999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 109 ITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 109 ~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+.|.++|+ |.|--.-+.+++|||+||..|++||.|+.++.
T Consensus 202 e~~~aiil-ITHDl~vva~~aDri~VMYaG~iVE~g~~~~i 241 (316)
T COG0444 202 EKGTALIL-ITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI 241 (316)
T ss_pred hcCCEEEE-EeCCHHHHHHhcceEEEEECcEEEEeCCHHHH
Confidence 77888776 44556668899999999999999999997643
No 473
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=8.5e-19 Score=202.47 Aligned_cols=136 Identities=24% Similarity=0.357 Sum_probs=112.1
Q ss_pred hhhcCCCCC-------ccHHHHHHHhhhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCC
Q 001048 7 EKLAGIFPD-------PDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPT 79 (1174)
Q Consensus 7 ~~~~~~~~~-------~~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P 79 (1174)
++..|+++| .++.+.+.... +.+..++++++++.+||++..|..+++ |||||||||+||++|+.+|
T Consensus 75 ~~~i~~v~q~~~l~~~~tv~enl~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qRvalaraL~~~p 147 (352)
T PRK11144 75 KRRIGYVFQDARLFPHYKVRGNLRYGM--AKSMVAQFDKIVALLGIEPLLDRYPGS-----LSGGEKQRVAIGRALLTAP 147 (352)
T ss_pred hCCEEEEcCCcccCCCCcHHHHHHhhh--hhhhHHHHHHHHHHcCCchhhhCCccc-----CCHHHHHHHHHHHHHHcCC
Confidence 445555544 45655554221 122345689999999999988988865 9999999999999999999
Q ss_pred cEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 80 RALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 80 ~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
++|+|||||||||+.++..+++.|+++.+..++|+|++.|.+ .++.+++|++++|.+|+++..|++++..
T Consensus 148 ~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 148 ELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 999999999999999999999999999876688998887766 4788999999999999999999886553
No 474
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.77 E-value=7.5e-19 Score=189.71 Aligned_cols=107 Identities=24% Similarity=0.362 Sum_probs=97.1
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||.+..|..+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++..+
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 181 (213)
T cd03301 107 IDERVREVAELLQIEHLLDRKPKQ-----LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLG 181 (213)
T ss_pred HHHHHHHHHHHcCCHHHHhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 345688999999999988998866 999999999999999999999999999999999999999999999987568
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeC
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G 144 (1174)
+|+|++.|++. ++.+.+|+|++|.+|+++++|
T Consensus 182 ~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 182 TTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 89999888763 667889999999999999887
No 475
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=8.3e-19 Score=190.23 Aligned_cols=110 Identities=23% Similarity=0.300 Sum_probs=98.3
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||.+..+..+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+..+
T Consensus 108 ~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~ 182 (220)
T cd03293 108 ARERAEELLELVGLSGFENAYPHQ-----LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETG 182 (220)
T ss_pred HHHHHHHHHHHcCChhhhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 345689999999999888888865 999999999999999999999999999999999999999999999876568
Q ss_pred CEEEEEecCCChhHHhhhhheeeec--CCcEEEeCCcc
Q 001048 112 ATALISLLQPAPETFDLFDDVILMA--EGKIVYHGPLS 147 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~--~G~vvy~G~~~ 147 (1174)
+|+|++.|++. ++.+.+|++++|. +|++++.++++
T Consensus 183 ~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 183 KTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 89998877664 6678899999999 79999998764
No 476
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.77 E-value=8.3e-19 Score=202.02 Aligned_cols=132 Identities=23% Similarity=0.273 Sum_probs=111.3
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.++.+.+.... ..+.+..++++++++.+||++..|..+++ |||||||||+||++|+.+|+||+||||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~-----LSgGq~QRV~LARALa~~P~ILLlDEP 191 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGE-----LSGGMQQRVGLARAFAMDADILLMDEP 191 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 344456776665321 12344556789999999999999998866 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|||||+.++..+++.|+++.+..++|+|+..|.+. ++.+++|+|++|.+|+++..|++++.
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei 252 (382)
T TIGR03415 192 FSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEI 252 (382)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999998766889998777654 67899999999999999999997654
No 477
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.77 E-value=1.2e-18 Score=189.70 Aligned_cols=104 Identities=31% Similarity=0.608 Sum_probs=96.1
Q ss_pred HHHH-HHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCE
Q 001048 35 QTDY-ILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDAT 113 (1174)
Q Consensus 35 ~v~~-vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~t 113 (1174)
++++ +++.+++.+..|+.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .++|
T Consensus 122 ~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~t 195 (226)
T cd03234 122 RVEDVLLRDLALTRIGGNLVKG-----ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRI 195 (226)
T ss_pred HHHHHHHHhhcchhhhcccccC-----cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCE
Confidence 4555 89999999888887765 999999999999999999999999999999999999999999999875 4789
Q ss_pred EEEEecCCChhHHhhhhheeeecCCcEEEeC
Q 001048 114 ALISLLQPAPETFDLFDDVILMAEGKIVYHG 144 (1174)
Q Consensus 114 vI~sihQps~~i~~lfD~IivL~~G~vvy~G 144 (1174)
+|++.|++..++.+.+|++++|.+|+++++|
T Consensus 196 iii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 196 VILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred EEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999989999999999999999999876
No 478
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=9.6e-19 Score=191.59 Aligned_cols=136 Identities=22% Similarity=0.292 Sum_probs=110.3
Q ss_pred hhhcCCCCCc-------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHH
Q 001048 7 EKLAGIFPDP-------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELI 75 (1174)
Q Consensus 7 ~~~~~~~~~~-------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aL 75 (1174)
++..|++||. ++.+.+.... ....+..+.++++++.+||.+..|..+.+ |||||||||+||++|
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al 155 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQ-----LSGGQKQRVGIARAL 155 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhh-----CCHHHHHHHHHHHHH
Confidence 5566766663 4444443211 11222345688999999999888887754 999999999999999
Q ss_pred hcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 76 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 76 v~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+.+|++|+|||||+|||+.++..+.+.|+++++..|+|+|++.|++ .++.+.+|++++|.+|++++.|+.++
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (233)
T cd03258 156 ANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEE 227 (233)
T ss_pred hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999998875688999988865 46778899999999999999998654
No 479
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.77 E-value=7.2e-19 Score=218.95 Aligned_cols=141 Identities=18% Similarity=0.262 Sum_probs=113.0
Q ss_pred cchhhhcCCCCCcc------HHHHHHHhhhccchhhhHHHHHHHHhCCc-------ccccccccCCCcccCCccccchhH
Q 001048 4 IKLEKLAGIFPDPD------VDAYMKAISAEGLENSLQTDYILKILGLD-------ICADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 4 ~~~~~~~~~~~~~~------v~~~~~~~~~~~~e~~~~v~~vl~~lgL~-------~~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
+..|+..+.+||+. +.+.+..... +.-.++++++.++..||. +..||.+|+. ++.||||||||++
T Consensus 413 ~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSGGqrQRi~ 490 (582)
T PRK11176 413 ASLRNQVALVSQNVHLFNDTIANNIAYART-EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSGGQRQRIA 490 (582)
T ss_pred HHHHhhceEEccCceeecchHHHHHhcCCC-CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCHHHHHHHH
Confidence 45678889999864 4455542211 112344678888888744 4569999984 4559999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||+|+++|+||+||||||+||+.++..+.+.|+++. .++|+|+..|.+ ++.+.||+|++|++|++++.|++++..
T Consensus 491 LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELL 566 (582)
T ss_pred HHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999875 367888766655 789999999999999999999987654
No 480
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=9.9e-19 Score=196.52 Aligned_cols=176 Identities=22% Similarity=0.292 Sum_probs=118.7
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccC-CCCCCCCC
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQN-DIHSPNIT 675 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~-~~~~~~lT 675 (1174)
+.+.+|++-++++..|.-++|+|+||+|||||||+|+. |+|. +.+..+ ..+. -+++-. +.+..+ |
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v~--~f~veq-E~~g--~~t~~~~~~l~~D-~ 156 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQVS--GFHVEQ-EVRG--DDTEALQSVLESD-T 156 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCcC--ccCchh-heec--cchHHHhhhhhcc-H
Confidence 45789999999999999999999999999999999985 2222 222111 0110 122211 122223 3
Q ss_pred HHHHHHHHHhhccCCCCCHH-HHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 676 VEESIVFSAWLRLSTQIDSK-TKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
.++.+...- ..+... +..+...++|..+|...- .... .++||||=|-|+++||||..+|+||+|||||
T Consensus 157 ~~~dfl~~e-----~~l~~~~~l~ei~~~~L~glGFt~emq~~p-----t~slSGGWrMrlaLARAlf~~pDlLLLDEPT 226 (582)
T KOG0062|consen 157 ERLDFLAEE-----KELLAGLTLEEIYDKILAGLGFTPEMQLQP-----TKSLSGGWRMRLALARALFAKPDLLLLDEPT 226 (582)
T ss_pred HHHHHHHhh-----hhhhccchHHHHHHHHHHhCCCCHHHHhcc-----ccccCcchhhHHHHHHHHhcCCCEEeecCCc
Confidence 333332210 011111 334445558888887532 2222 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 754 SGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+.||..+..-+.+.|+.+ +.|+|+++||-+ -+-+.+.++|-+.
T Consensus 227 NhLDv~av~WLe~yL~t~---~~T~liVSHDr~-FLn~V~tdIIH~~ 269 (582)
T KOG0062|consen 227 NHLDVVAVAWLENYLQTW---KITSLIVSHDRN-FLNTVCTDIIHLE 269 (582)
T ss_pred ccchhHHHHHHHHHHhhC---CceEEEEeccHH-HHHHHHHHHHHHh
Confidence 999999999988888765 489999999843 3445566666664
No 481
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.77 E-value=9.9e-19 Score=191.40 Aligned_cols=134 Identities=20% Similarity=0.296 Sum_probs=109.8
Q ss_pred hhcCCCCCc-------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHh
Q 001048 8 KLAGIFPDP-------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIV 76 (1174)
Q Consensus 8 ~~~~~~~~~-------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv 76 (1174)
+..|++||. ++.+.+.... ....+..++++++++.+||.+..++.+++ |||||||||+||++|+
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~ 149 (232)
T cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASS-----LSGGERRRVEIARALA 149 (232)
T ss_pred ccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHHh
Confidence 446776663 4445443211 11223345678999999999988888865 9999999999999999
Q ss_pred cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 77 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 77 ~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
.+|++|+|||||+|||+.++..+.+.|+++++ .++|+|++.|.+. ++.+.+|++++|.+|++++.|+.++
T Consensus 150 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 219 (232)
T cd03218 150 TNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEE 219 (232)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHH
Confidence 99999999999999999999999999999875 5789988877655 8889999999999999999998654
No 482
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=1.2e-18 Score=180.66 Aligned_cols=134 Identities=22% Similarity=0.337 Sum_probs=117.1
Q ss_pred CCCCCccHHHHHHHhhh----------------ccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHH
Q 001048 11 GIFPDPDVDAYMKAISA----------------EGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGEL 74 (1174)
Q Consensus 11 ~~~~~~~v~~~~~~~~~----------------~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~a 74 (1174)
-++|+.+|++.+..... ++.|-.++..++|+.+||.+.+|+..|+ ||+||+||+-||+|
T Consensus 89 rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~-----LsyG~qR~LEIArA 163 (250)
T COG0411 89 RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARA 163 (250)
T ss_pred cccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhc-----CChhHhHHHHHHHH
Confidence 35778888876554321 3455566789999999999999999998 99999999999999
Q ss_pred HhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 75 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 75 Lv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|.++|++|+||||.+||.+.-..++.+.++++.+..|.|+++ |-|-..-+..++|||+||+.|+++..|+++++.
T Consensus 164 La~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~till-IEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 164 LATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILL-IEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred HhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEE-EEeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence 999999999999999999999999999999999766777776 678899999999999999999999999987554
No 483
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.1e-18 Score=195.15 Aligned_cols=137 Identities=21% Similarity=0.304 Sum_probs=109.6
Q ss_pred hhhhcCCCCCcc--------HHHHHHHh-h---hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 6 LEKLAGIFPDPD--------VDAYMKAI-S---AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 6 ~~~~~~~~~~~~--------v~~~~~~~-~---~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
.|+..|++||.. +.+.+... . ....+..++++++++.+||.+..|+.+++ ||||||||++||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~lar 149 (271)
T PRK13638 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQC-----LSHGQKKRVAIAG 149 (271)
T ss_pred HHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchh-----CCHHHHHHHHHHH
Confidence 456678877742 22333221 1 11223345678899999999988888765 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|+.+|+||+|||||+|||+.++..+.+.|+++++ .|+|+|++.|.+. .+.+.+|++++|.+|++++.|++++.
T Consensus 150 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (271)
T PRK13638 150 ALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPGEV 223 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999875 4789888776554 56688999999999999999987653
No 484
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.77 E-value=6.9e-19 Score=188.66 Aligned_cols=101 Identities=26% Similarity=0.347 Sum_probs=91.5
Q ss_pred hHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCE
Q 001048 34 LQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDAT 113 (1174)
Q Consensus 34 ~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~t 113 (1174)
++++++++.+||.+..|+.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~t 178 (205)
T cd03226 105 EQAETVLKDLDLYALKERHPLS-----LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKA 178 (205)
T ss_pred HHHHHHHHHcCCchhcCCCchh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCE
Confidence 4689999999999988988865 999999999999999999999999999999999999999999999875 4889
Q ss_pred EEEEecCCChhHHhhhhheeeecCCcEE
Q 001048 114 ALISLLQPAPETFDLFDDVILMAEGKIV 141 (1174)
Q Consensus 114 vI~sihQps~~i~~lfD~IivL~~G~vv 141 (1174)
+|++.|.+. ++.+.+|++++|.+|++|
T Consensus 179 ii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 179 VIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 998877665 466789999999999975
No 485
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.77 E-value=1.1e-18 Score=201.78 Aligned_cols=137 Identities=23% Similarity=0.401 Sum_probs=112.0
Q ss_pred hhhcCCCCC-------ccHHHHHHHhh--hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhc
Q 001048 7 EKLAGIFPD-------PDVDAYMKAIS--AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVG 77 (1174)
Q Consensus 7 ~~~~~~~~~-------~~v~~~~~~~~--~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~ 77 (1174)
|+..|+++| .++.+.+.... ....+..++++++++.+||.+..|..+++ |||||||||+||++|+.
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLS 148 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHHc
Confidence 445565554 45655554211 11233345689999999999989988865 99999999999999999
Q ss_pred CCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 78 PTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 78 ~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|++|+|||||+|||+.++..+++.|+++++..|+|+|++.|.+. ++.+++|+|++|.+|++++.|++++.
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 999999999999999999999999999998766889998877664 67788999999999999999987654
No 486
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.77 E-value=1e-18 Score=187.94 Aligned_cols=132 Identities=23% Similarity=0.289 Sum_probs=106.1
Q ss_pred hhhhcCCCCCc-------cHHHHHHHhhhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcC
Q 001048 6 LEKLAGIFPDP-------DVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGP 78 (1174)
Q Consensus 6 ~~~~~~~~~~~-------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~ 78 (1174)
.++..+++||. ++.+.+...........++++++++.+||.+..|+.+++ |||||||||+||++|+.+
T Consensus 70 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 70 ALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKG-----FSLGMKQRLGIALALLGN 144 (208)
T ss_pred HHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhh-----CCHHHHHHHHHHHHHhcC
Confidence 34556776663 444444332211111345688999999999988888765 999999999999999999
Q ss_pred CcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeC
Q 001048 79 TRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHG 144 (1174)
Q Consensus 79 P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G 144 (1174)
|++|+|||||+|||+.+...+.+.|+++++ .++|+|++.|++. .+.+.+|++++|.+|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999876 5889998877554 566789999999999999876
No 487
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.77 E-value=7.4e-19 Score=223.21 Aligned_cols=142 Identities=20% Similarity=0.241 Sum_probs=112.6
Q ss_pred ccchhhhcCCCCCccHH------HHHHHhhhccchhhhHHHHHHHHhCCc-------ccccccccCCCcccCCccccchh
Q 001048 3 VIKLEKLAGIFPDPDVD------AYMKAISAEGLENSLQTDYILKILGLD-------ICADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 3 ~~~~~~~~~~~~~~~v~------~~~~~~~~~~~e~~~~v~~vl~~lgL~-------~~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
....|+..|++||+..+ +.++.-.. ....++++.+.++..|+. +..||.||+ .+..||||||||+
T Consensus 543 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRi 620 (708)
T TIGR01193 543 RHTLRQFINYLPQEPYIFSGSILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRI 620 (708)
T ss_pred HHHHHHheEEEecCceehhHHHHHHHhccCC-CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHH
Confidence 34678899999997554 44442211 112234567778877764 456999998 3456999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||||+++|+||+||||||+||+.++..+++.|+++ .++|+|+..|. .++.+.+|+|++|++|++++.|++++.
T Consensus 621 alARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr--~~~~~~~D~i~~l~~G~i~~~G~~~~L 695 (708)
T TIGR01193 621 ALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHR--LSVAKQSDKIIVLDHGKIIEQGSHDEL 695 (708)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecc--hHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999974 36788875554 468899999999999999999999766
Q ss_pred HH
Q 001048 150 CK 151 (1174)
Q Consensus 150 ~~ 151 (1174)
.+
T Consensus 696 ~~ 697 (708)
T TIGR01193 696 LD 697 (708)
T ss_pred Hh
Confidence 53
No 488
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.3e-18 Score=191.68 Aligned_cols=136 Identities=25% Similarity=0.312 Sum_probs=109.3
Q ss_pred hhhcCCCCC-------ccHHHHHHHhh-h---ccchhhhHHHHHHHHhCCcc--cccccccCCCcccCCccccchhHHHH
Q 001048 7 EKLAGIFPD-------PDVDAYMKAIS-A---EGLENSLQTDYILKILGLDI--CADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 7 ~~~~~~~~~-------~~v~~~~~~~~-~---~~~e~~~~v~~vl~~lgL~~--~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
++..|++|| .++.+.+.... . ...+..++++++++.+||.+ ..|+.+.+ |||||||||+||+
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-----LS~G~~qrv~lar 148 (242)
T cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHE-----LSGGQQQRVGVAR 148 (242)
T ss_pred hcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhh-----CCHHHHHHHHHHH
Confidence 445666666 34545554321 1 12233456889999999996 66776654 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+|+.+|++|+|||||+|||+.++..+.+.|+++++..|+|+|++.|++. ++.+.+|+|++|.+|++++.|++++
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 222 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDE 222 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999998655889998888764 6678899999999999999998654
No 489
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.2e-18 Score=194.33 Aligned_cols=111 Identities=23% Similarity=0.284 Sum_probs=99.5
Q ss_pred hhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCC
Q 001048 33 SLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDA 112 (1174)
Q Consensus 33 ~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~ 112 (1174)
.+.++++++.+||.+..|+.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~ 195 (265)
T PRK10253 121 EEAVTKAMQATGITHLADQSVDT-----LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGY 195 (265)
T ss_pred HHHHHHHHHHcCCHHHhcCCccc-----CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCC
Confidence 34678999999999888888765 9999999999999999999999999999999999999999999999865578
Q ss_pred EEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 113 TALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 113 tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|+|++.|++. ++.+.+|++++|.+|++++.|++++.
T Consensus 196 tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 196 TLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8988776555 78899999999999999999987543
No 490
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.76 E-value=1.1e-18 Score=189.42 Aligned_cols=134 Identities=22% Similarity=0.351 Sum_probs=108.3
Q ss_pred hhhcCCCCC-------ccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHH
Q 001048 7 EKLAGIFPD-------PDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELI 75 (1174)
Q Consensus 7 ~~~~~~~~~-------~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aL 75 (1174)
++..|+++| .++.+.+.... ....+..++++++++.+||.+..++.+++ ||||||||++||++|
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al 148 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIAL 148 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhh-----CCHHHHHHHHHHHHH
Confidence 445666655 34545544221 11223345688999999999988988865 999999999999999
Q ss_pred hcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 76 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 76 v~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++.|++. .+.+.+|++++|.+|++++.|++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHH
Confidence 999999999999999999999999999999874 478888877665 5667899999999999999998653
No 491
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.76 E-value=1.4e-18 Score=198.23 Aligned_cols=115 Identities=20% Similarity=0.215 Sum_probs=99.1
Q ss_pred cchhhhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHh
Q 001048 29 GLENSLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLV 107 (1174)
Q Consensus 29 ~~e~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la 107 (1174)
+.+..++++++|+.+||. +..|+..++ |||||||||+||++|+.+|++|++||||||||..++.++++.|+++.
T Consensus 134 ~~~~~~~~~~~l~~vgl~~~~~~~~p~~-----LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~ 208 (331)
T PRK15079 134 RQEVKDRVKAMMLKVGLLPNLINRYPHE-----FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ 208 (331)
T ss_pred HHHHHHHHHHHHHHcCCChHHhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 344566788999999994 566776654 99999999999999999999999999999999999999999999998
Q ss_pred HhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 108 HITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 108 ~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+..|.|+|+..|. ...+.+.+|+|++|.+|++++.|+.++.
T Consensus 209 ~~~~~til~iTHd-l~~~~~~~dri~vl~~G~ive~g~~~~i 249 (331)
T PRK15079 209 REMGLSLIFIAHD-LAVVKHISDRVLVMYLGHAVELGTYDEV 249 (331)
T ss_pred HHcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 7668888886653 4466678999999999999999987654
No 492
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=9.1e-19 Score=197.71 Aligned_cols=111 Identities=23% Similarity=0.317 Sum_probs=98.1
Q ss_pred hhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 33 SLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 33 ~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
.++++++++.+||. +..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++..+
T Consensus 127 ~~~~~~ll~~~~L~~~~~~~~~~~-----LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~ 201 (289)
T PRK13645 127 YKKVPELLKLVQLPEDYVKRSPFE-----LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYK 201 (289)
T ss_pred HHHHHHHHHHcCCChhHhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 34678899999994 677777755 999999999999999999999999999999999999999999999876558
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|+|++.|.+. ++.+.+|++++|.+|++++.|++++.
T Consensus 202 ~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 202 KRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 89998877655 67789999999999999999987544
No 493
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.76 E-value=1.8e-18 Score=197.65 Aligned_cols=118 Identities=17% Similarity=0.221 Sum_probs=99.2
Q ss_pred chhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHh
Q 001048 30 LENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 109 (1174)
Q Consensus 30 ~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~ 109 (1174)
.+..+++.++|+.+||.+..++ .+ .+.+.|||||||||+||++|+.+|++|++||||||||..++..+++.|+++.+.
T Consensus 133 ~~~~~~~~~~L~~vgL~~~~~~-~~-~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~ 210 (330)
T PRK09473 133 AEAFEESVRMLDAVKMPEARKR-MK-MYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE 210 (330)
T ss_pred HHHHHHHHHHHHHcCCCChHHH-hc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH
Confidence 3444578899999999864332 22 244669999999999999999999999999999999999999999999999876
Q ss_pred CCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 110 TDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 110 ~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
.|.|+|+..|... .+.+.+|+|++|++|++++.|+.++..
T Consensus 211 ~g~til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 211 FNTAIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred cCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 6889998766554 566789999999999999999976553
No 494
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.6e-18 Score=189.55 Aligned_cols=111 Identities=19% Similarity=0.361 Sum_probs=99.8
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||++..|+.+++ ||||||||++||++++.+|++++|||||+|||..++..+.+.|+++++..|
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~ 180 (232)
T PRK10771 106 QREKLHAIARQMGIEDLLARLPGQ-----LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQ 180 (232)
T ss_pred HHHHHHHHHHHcCcHHHHhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 345689999999999989998865 999999999999999999999999999999999999999999999876558
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+|+|++.|++. ++.+.+|++++|.+|++++.|+.++
T Consensus 181 ~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~ 216 (232)
T PRK10771 181 LTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDE 216 (232)
T ss_pred CEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 89998877655 6678899999999999999998653
No 495
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.9e-18 Score=193.57 Aligned_cols=137 Identities=25% Similarity=0.282 Sum_probs=111.1
Q ss_pred hhhhcCCCCCc--------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 6 LEKLAGIFPDP--------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 6 ~~~~~~~~~~~--------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
+++..|++||+ ++.+.+.... ..+.+..+++.++++.+||++..|+.+++ ||||||||++||+
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LS~Gq~qrv~lar 150 (275)
T PRK13639 76 VRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHH-----LSGGQKKRVAIAG 150 (275)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhh-----CCHHHHHHHHHHH
Confidence 45667777775 2333333111 11223345688999999999988998866 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|+|++.|.+ ..+.+.+|++++|.+|++++.|++++.
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEV 224 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999976 488999887754 366678999999999999999998764
No 496
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.76 E-value=1.9e-18 Score=193.01 Aligned_cols=111 Identities=24% Similarity=0.295 Sum_probs=99.3
Q ss_pred hhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCC
Q 001048 33 SLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDA 112 (1174)
Q Consensus 33 ~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~ 112 (1174)
..+++++++.+||.+..|..+++ |||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++..|+
T Consensus 121 ~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~ 195 (269)
T PRK11831 121 HSTVMMKLEAVGLRGAAKLMPSE-----LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGV 195 (269)
T ss_pred HHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCc
Confidence 34678899999999989998866 9999999999999999999999999999999999999999999999765578
Q ss_pred EEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 113 TALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 113 tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|+|++.|.+ .++.+.+|++++|.+|++++.|++++.
T Consensus 196 tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 196 TCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred EEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 999887754 467788999999999999999987543
No 497
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.76 E-value=2.3e-18 Score=187.76 Aligned_cols=181 Identities=25% Similarity=0.357 Sum_probs=134.7
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC------CCeEEEEEEECCeeCCcccccceEEEEccCC-CC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT------GGIIEGDIRIGGYPKVQHTFARISGYCEQND-IH 670 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~------~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~-~~ 670 (1174)
...+|+|+|++++||++++|+|+|||||||+|++|.|... +.|.+|.|.+--.. ..+.+|-+. .-
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~ 466 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEPE 466 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCcccccc
Confidence 4579999999999999999999999999999999999432 23667877663211 223444332 22
Q ss_pred CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEe
Q 001048 671 SPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 750 (1174)
Q Consensus 671 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlD 750 (1174)
+..-|+.|++.- ...+ .....+++...|+.+..-.. ...+.||-|||.|..||.++...|.+++.|
T Consensus 467 f~~~tilehl~s-----~tGD------~~~AveILnraGlsDAvlyR---r~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 467 FGEVTILEHLRS-----KTGD------LNAAVEILNRAGLSDAVLYR---RKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cCchhHHHHHhh-----ccCc------hhHHHHHHHhhccchhhhhh---ccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 335577776531 1111 12245788888887542111 123579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHh--cceeEEecC
Q 001048 751 EPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAF--DDLVLMKNG 802 (1174)
Q Consensus 751 EPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~--d~~~~l~~~ 802 (1174)
|-.|.||+.++..+.+-|.+++++ |.|++++||+| ++.++. |.++++..|
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrp--Ev~~AL~PD~li~vgYg 585 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRP--EVGNALRPDTLILVGYG 585 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH--HHHhccCCceeEEeecc
Confidence 999999999999999999999865 99999999987 456655 777777653
No 498
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.76 E-value=2.1e-18 Score=189.17 Aligned_cols=111 Identities=21% Similarity=0.328 Sum_probs=98.6
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..+.++++++.+||.+..|+.+++ ||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++++..|
T Consensus 109 ~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 183 (236)
T TIGR03864 109 ARERIAALLARLGLAERADDKVRE-----LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQG 183 (236)
T ss_pred HHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence 345688999999999888888865 999999999999999999999999999999999999999999999986568
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|+|++.|.+..- ..+|++++|.+|++++.|++++.
T Consensus 184 ~tiii~sH~~~~~--~~~d~i~~l~~G~i~~~~~~~~~ 219 (236)
T TIGR03864 184 LSVLWATHLVDEI--EADDRLVVLHRGRVLADGAAAEL 219 (236)
T ss_pred CEEEEEecChhhH--hhCCEEEEEeCCeEEEeCCHHHH
Confidence 8999888877654 35999999999999999987543
No 499
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.76 E-value=7.5e-18 Score=175.01 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHhh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 726 LSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
||||||||++|||+++ .+|+++++|||+++||+..+..+.+.|++++++|.|+|+++|++ +..+.+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~--~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK--EMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH--HHHhhCCeEEEEEE
Confidence 9999999999999996 69999999999999999999999999999987789999999986 45678999998876
Q ss_pred Cc
Q 001048 802 GG 803 (1174)
Q Consensus 802 ~G 803 (1174)
.|
T Consensus 173 ~~ 174 (178)
T cd03239 173 VH 174 (178)
T ss_pred eC
Confidence 43
No 500
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.1e-18 Score=192.84 Aligned_cols=123 Identities=19% Similarity=0.252 Sum_probs=104.0
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||.+..|+.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++..|
T Consensus 119 ~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~ 193 (269)
T PRK13648 119 MHRRVSEALKQVDMLERADYEPNA-----LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHN 193 (269)
T ss_pred HHHHHHHHHHHcCCchhhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 345688999999999888887755 999999999999999999999999999999999999999999999876558
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH---HHHHhhCCCCCC
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS---CKFFEGCGFRCP 161 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~---~~yf~~~G~~~p 161 (1174)
+|+|++.|++.. +. .+|+|++|++|++++.|++++. ...+..+|+++|
T Consensus 194 ~tiiivtH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 194 ITIISITHDLSE-AM-EADHVIVMNKGTVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred CEEEEEecCchH-Hh-cCCEEEEEECCEEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 899998888754 44 4999999999999999987654 234444555544
Done!