Query 001048
Match_columns 1174
No_of_seqs 660 out of 4393
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 08:21:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 2.2E-61 7.4E-66 642.1 35.5 217 572-813 1075-1301(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 8.4E-56 2.9E-60 587.1 42.9 217 572-813 1029-1255(1284)
3 3bk7_A ABC transporter ATP-bin 100.0 3E-46 1E-50 456.9 30.4 204 572-814 356-561 (607)
4 3ozx_A RNAse L inhibitor; ATP 100.0 9.6E-46 3.3E-50 446.7 28.5 216 573-825 269-486 (538)
5 1yqt_A RNAse L inhibitor; ATP- 100.0 1.2E-45 4E-50 447.7 28.9 203 573-814 287-491 (538)
6 3j16_B RLI1P; ribosome recycli 100.0 3.6E-45 1.2E-49 446.1 29.0 201 600-825 361-568 (608)
7 3tui_C Methionine import ATP-b 100.0 3E-44 1E-48 407.8 25.8 220 573-813 24-250 (366)
8 3tif_A Uncharacterized ABC tra 100.0 1E-43 3.6E-48 385.8 27.0 221 574-813 2-231 (235)
9 3rlf_A Maltose/maltodextrin im 100.0 6.9E-44 2.4E-48 407.7 25.5 215 574-813 4-220 (381)
10 3fvq_A Fe(3+) IONS import ATP- 100.0 5.2E-44 1.8E-48 406.2 22.8 216 573-813 4-225 (359)
11 2iw3_A Elongation factor 3A; a 100.0 9.1E-44 3.1E-48 446.7 27.1 207 573-810 671-981 (986)
12 3ux8_A Excinuclease ABC, A sub 100.0 2.5E-43 8.5E-48 442.0 30.8 195 599-812 335-636 (670)
13 3gfo_A Cobalt import ATP-bindi 100.0 8.7E-44 3E-48 393.6 23.0 217 573-813 7-230 (275)
14 2pcj_A ABC transporter, lipopr 100.0 2.9E-43 1E-47 379.7 25.9 213 573-811 4-223 (224)
15 2olj_A Amino acid ABC transpor 100.0 2.2E-43 7.5E-48 388.2 24.8 215 573-812 24-244 (263)
16 1b0u_A Histidine permease; ABC 100.0 2.9E-43 1E-47 388.4 23.6 215 573-812 6-238 (262)
17 1z47_A CYSA, putative ABC-tran 100.0 5.6E-43 1.9E-47 398.3 25.4 218 572-813 13-232 (355)
18 1vpl_A ABC transporter, ATP-bi 100.0 5.6E-43 1.9E-47 383.8 23.4 215 573-812 15-231 (256)
19 2it1_A 362AA long hypothetical 100.0 9.3E-43 3.2E-47 398.1 24.9 215 574-813 4-220 (362)
20 1g6h_A High-affinity branched- 100.0 6.1E-43 2.1E-47 385.4 21.7 219 573-813 7-239 (257)
21 2yyz_A Sugar ABC transporter, 100.0 7.6E-43 2.6E-47 398.4 23.0 215 574-813 4-220 (359)
22 1g29_1 MALK, maltose transport 100.0 1.7E-42 5.9E-47 398.4 25.7 215 574-813 4-226 (372)
23 1oxx_K GLCV, glucose, ABC tran 100.0 1.1E-42 3.8E-47 397.7 21.3 215 574-813 4-227 (353)
24 4g1u_C Hemin import ATP-bindin 100.0 1.1E-42 3.8E-47 384.0 20.5 214 573-813 11-234 (266)
25 1ji0_A ABC transporter; ATP bi 100.0 1.7E-42 5.6E-47 378.0 21.4 214 573-812 6-224 (240)
26 1v43_A Sugar-binding transport 100.0 1.5E-42 5E-47 397.9 21.6 215 574-813 12-228 (372)
27 3d31_A Sulfate/molybdate ABC t 100.0 4.1E-42 1.4E-46 391.2 21.5 211 574-813 2-214 (348)
28 3nh6_A ATP-binding cassette SU 100.0 4.9E-42 1.7E-46 384.1 19.9 213 572-813 52-274 (306)
29 2onk_A Molybdate/tungstate ABC 100.0 8.8E-42 3E-46 370.9 20.4 209 574-812 2-212 (240)
30 3pih_A Uvrabc system protein A 100.0 7.2E-41 2.5E-45 421.1 30.1 200 599-813 597-899 (916)
31 2d2e_A SUFC protein; ABC-ATPas 100.0 2E-41 6.8E-46 371.8 21.9 217 574-812 4-229 (250)
32 2yz2_A Putative ABC transporte 100.0 1.8E-41 6.2E-46 375.3 20.9 215 574-812 3-223 (266)
33 2r6f_A Excinuclease ABC subuni 100.0 6.2E-41 2.1E-45 416.9 27.8 197 600-812 638-938 (972)
34 2ihy_A ABC transporter, ATP-bi 100.0 1E-41 3.6E-46 378.5 16.5 220 572-813 20-249 (279)
35 2zu0_C Probable ATP-dependent 100.0 1E-40 3.6E-45 369.1 24.4 221 573-812 20-250 (267)
36 2qi9_C Vitamin B12 import ATP- 100.0 8.7E-41 3E-45 364.8 20.2 206 573-813 4-219 (249)
37 2nq2_C Hypothetical ABC transp 100.0 2.6E-40 8.8E-45 362.7 23.5 209 573-813 4-214 (253)
38 1sgw_A Putative ABC transporte 100.0 4.9E-41 1.7E-45 357.9 16.8 201 573-805 10-210 (214)
39 2ygr_A Uvrabc system protein A 100.0 5.9E-40 2E-44 409.8 28.2 198 600-813 656-957 (993)
40 2vf7_A UVRA2, excinuclease ABC 100.0 1.3E-39 4.5E-44 406.5 30.7 197 600-812 511-823 (842)
41 2ff7_A Alpha-hemolysin translo 100.0 1.3E-40 4.5E-45 364.0 18.7 213 572-812 6-228 (247)
42 2ixe_A Antigen peptide transpo 100.0 7.5E-41 2.6E-45 370.8 16.5 214 573-812 16-241 (271)
43 3qf4_A ABC transporter, ATP-bi 100.0 8.3E-39 2.8E-43 393.5 28.2 214 572-813 340-563 (587)
44 1mv5_A LMRA, multidrug resista 100.0 3.7E-40 1.3E-44 360.3 13.8 212 574-813 2-223 (243)
45 3b5x_A Lipid A export ATP-bind 100.0 5E-38 1.7E-42 387.3 33.9 215 572-813 340-564 (582)
46 2ghi_A Transport protein; mult 100.0 5.1E-39 1.7E-43 354.2 19.6 211 573-812 17-238 (260)
47 2pjz_A Hypothetical protein ST 100.0 5.7E-39 2E-43 353.0 19.1 207 574-812 2-211 (263)
48 4a82_A Cystic fibrosis transme 100.0 2.2E-39 7.5E-44 398.7 15.2 214 572-813 338-561 (578)
49 2yl4_A ATP-binding cassette SU 100.0 3E-38 1E-42 390.3 24.6 216 574-813 342-567 (595)
50 3qf4_B Uncharacterized ABC tra 100.0 3.5E-38 1.2E-42 389.1 24.9 213 572-813 353-575 (598)
51 3b60_A Lipid A export ATP-bind 100.0 1.6E-38 5.5E-43 391.7 20.2 214 573-813 341-564 (582)
52 2pze_A Cystic fibrosis transme 100.0 2.7E-38 9.3E-43 342.1 18.5 201 573-812 6-214 (229)
53 2cbz_A Multidrug resistance-as 100.0 3.1E-38 1.1E-42 343.3 17.4 204 574-813 4-214 (237)
54 3gd7_A Fusion complex of cysti 100.0 8.8E-39 3E-43 368.9 13.1 213 572-813 18-239 (390)
55 4f4c_A Multidrug resistance pr 100.0 4.1E-38 1.4E-42 418.8 20.2 216 572-814 414-639 (1321)
56 3g5u_A MCG1178, multidrug resi 100.0 1.1E-35 3.9E-40 394.5 26.2 218 572-814 386-611 (1284)
57 2bbs_A Cystic fibrosis transme 100.0 3.3E-36 1.1E-40 335.6 15.8 197 573-813 40-244 (290)
58 3ux8_A Excinuclease ABC, A sub 100.0 5.5E-31 1.9E-35 330.1 13.6 207 598-813 30-295 (670)
59 3bk7_A ABC transporter ATP-bin 100.0 4.9E-31 1.7E-35 322.5 9.3 180 600-800 106-302 (607)
60 1yqt_A RNAse L inhibitor; ATP- 100.0 7.6E-31 2.6E-35 318.0 8.7 180 600-800 36-232 (538)
61 2iw3_A Elongation factor 3A; a 100.0 1.6E-29 5.6E-34 317.8 20.0 195 573-813 435-632 (986)
62 3ozx_A RNAse L inhibitor; ATP 99.9 1.3E-28 4.4E-33 297.3 7.8 173 609-804 22-214 (538)
63 3j16_B RLI1P; ribosome recycli 99.9 9.6E-28 3.3E-32 292.6 11.1 188 600-807 92-301 (608)
64 2npi_A Protein CLP1; CLP1-PCF1 99.9 9E-28 3.1E-32 284.1 -8.0 197 602-824 128-350 (460)
65 4aby_A DNA repair protein RECN 99.9 9.6E-25 3.3E-29 259.1 16.1 205 599-809 48-381 (415)
66 3b85_A Phosphate starvation-in 99.9 1.6E-26 5.4E-31 245.3 -11.6 146 597-786 11-159 (208)
67 4gp7_A Metallophosphoesterase; 99.9 5.2E-24 1.8E-28 220.0 1.6 142 604-785 1-159 (171)
68 3tui_C Methionine import ATP-b 99.9 8.5E-23 2.9E-27 232.0 10.8 140 5-150 102-252 (366)
69 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 4.7E-22 1.6E-26 230.1 16.6 82 723-807 277-364 (365)
70 1e69_A Chromosome segregation 99.9 2.9E-22 1E-26 228.7 13.1 86 724-812 218-309 (322)
71 3gfo_A Cobalt import ATP-bindi 99.9 2.7E-22 9.3E-27 221.6 9.9 139 5-149 81-231 (275)
72 1tq4_A IIGP1, interferon-induc 99.9 1.3E-24 4.6E-29 252.1 -11.7 171 599-797 36-248 (413)
73 2olj_A Amino acid ABC transpor 99.8 2E-21 6.7E-26 213.5 12.0 137 6-149 98-246 (263)
74 2onk_A Molybdate/tungstate ABC 99.8 1.5E-21 5.1E-26 211.8 10.8 138 6-149 68-214 (240)
75 1b0u_A Histidine permease; ABC 99.8 1.3E-21 4.5E-26 215.5 10.6 137 6-149 91-240 (262)
76 3fvq_A Fe(3+) IONS import ATP- 99.8 2.5E-21 8.7E-26 219.9 12.5 133 12-150 91-227 (359)
77 4g1u_C Hemin import ATP-bindin 99.8 1.9E-21 6.6E-26 214.3 10.4 138 6-149 83-235 (266)
78 3tif_A Uncharacterized ABC tra 99.8 3.5E-21 1.2E-25 208.7 12.0 135 7-148 82-231 (235)
79 1g6h_A High-affinity branched- 99.8 5.3E-21 1.8E-25 210.3 12.3 110 32-148 130-239 (257)
80 2pcj_A ABC transporter, lipopr 99.8 6.9E-21 2.4E-25 204.9 12.9 131 8-146 82-223 (224)
81 3rlf_A Maltose/maltodextrin im 99.8 4.3E-21 1.5E-25 219.5 11.6 134 11-150 85-222 (381)
82 1z47_A CYSA, putative ABC-tran 99.8 7.8E-21 2.7E-25 216.2 13.3 133 12-150 98-234 (355)
83 3nh6_A ATP-binding cassette SU 99.8 5.4E-21 1.8E-25 213.8 11.1 141 4-151 124-277 (306)
84 1oxx_K GLCV, glucose, ABC tran 99.8 7.8E-21 2.7E-25 217.1 12.7 133 12-150 93-229 (353)
85 1ye8_A Protein THEP1, hypothet 99.8 6.6E-22 2.3E-26 204.8 3.4 147 614-808 2-160 (178)
86 2it1_A 362AA long hypothetical 99.8 8.3E-21 2.8E-25 216.9 12.3 133 12-150 86-222 (362)
87 2yyz_A Sugar ABC transporter, 99.8 9.3E-21 3.2E-25 216.2 12.5 133 12-150 86-222 (359)
88 1vpl_A ABC transporter, ATP-bi 99.8 1.2E-20 4.1E-25 206.5 12.7 139 6-151 86-235 (256)
89 1g29_1 MALK, maltose transport 99.8 1.2E-20 4.2E-25 216.7 12.9 132 12-149 92-227 (372)
90 3d31_A Sulfate/molybdate ABC t 99.8 1.5E-20 5.1E-25 213.8 13.2 131 13-149 84-215 (348)
91 2yz2_A Putative ABC transporte 99.8 1E-20 3.5E-25 209.0 11.5 139 6-151 76-227 (266)
92 1v43_A Sugar-binding transport 99.8 1.6E-20 5.6E-25 215.2 12.6 131 13-149 95-229 (372)
93 2ihy_A ABC transporter, ATP-bi 99.8 5.4E-21 1.8E-25 212.1 8.0 136 6-148 95-249 (279)
94 1znw_A Guanylate kinase, GMP k 99.8 4.2E-24 1.4E-28 228.1 -17.1 184 598-803 8-205 (207)
95 1ji0_A ABC transporter; ATP bi 99.8 1.6E-20 5.5E-25 204.3 10.9 135 8-149 81-226 (240)
96 2nq2_C Hypothetical ABC transp 99.8 3.2E-20 1.1E-24 203.1 12.0 128 14-148 79-214 (253)
97 2zu0_C Probable ATP-dependent 99.8 8.9E-20 3E-24 201.5 12.7 120 33-159 140-261 (267)
98 3sop_A Neuronal-specific septi 99.8 4.7E-22 1.6E-26 219.9 -5.7 147 614-785 4-150 (270)
99 2ixe_A Antigen peptide transpo 99.8 4.6E-20 1.6E-24 204.0 9.8 138 6-150 91-244 (271)
100 2qi9_C Vitamin B12 import ATP- 99.8 5.8E-20 2E-24 200.3 9.9 135 6-148 71-219 (249)
101 2pjz_A Hypothetical protein ST 99.8 7.2E-20 2.5E-24 201.0 10.2 134 7-150 73-214 (263)
102 2d2e_A SUFC protein; ABC-ATPas 99.8 9.4E-20 3.2E-24 199.5 10.8 109 33-147 119-229 (250)
103 3b9q_A Chloroplast SRP recepto 99.8 2.8E-21 9.7E-26 216.8 -2.1 154 602-784 90-256 (302)
104 2ff7_A Alpha-hemolysin translo 99.8 6.6E-20 2.3E-24 200.1 8.7 137 6-149 81-230 (247)
105 2v9p_A Replication protein E1; 99.8 2E-23 6.9E-28 232.5 -19.9 158 599-825 113-271 (305)
106 3b60_A Lipid A export ATP-bind 99.8 1.2E-19 4.2E-24 223.4 10.1 141 5-151 414-567 (582)
107 2ghi_A Transport protein; mult 99.8 2.2E-19 7.6E-24 197.5 10.5 138 6-150 91-241 (260)
108 3b5x_A Lipid A export ATP-bind 99.8 1.8E-19 6E-24 222.0 10.5 141 4-150 413-566 (582)
109 2yl4_A ATP-binding cassette SU 99.8 2E-19 7E-24 222.0 10.9 141 5-150 415-569 (595)
110 1mv5_A LMRA, multidrug resista 99.8 1.2E-19 4.3E-24 197.8 7.9 140 5-150 73-225 (243)
111 3qf4_A ABC transporter, ATP-bi 99.8 2.5E-19 8.6E-24 220.2 10.8 141 4-151 413-566 (587)
112 2vf7_A UVRA2, excinuclease ABC 99.8 1.9E-18 6.6E-23 216.1 18.6 109 698-814 357-473 (842)
113 4a82_A Cystic fibrosis transme 99.8 2.1E-19 7.2E-24 220.9 9.7 141 4-151 411-564 (578)
114 2pt7_A CAG-ALFA; ATPase, prote 99.8 3.9E-20 1.3E-24 210.6 2.9 131 600-802 159-290 (330)
115 3gd7_A Fusion complex of cysti 99.8 8.2E-20 2.8E-24 210.7 5.4 139 6-151 92-242 (390)
116 1z6g_A Guanylate kinase; struc 99.8 5.7E-23 2E-27 220.8 -19.6 178 599-797 10-205 (218)
117 3qf4_B Uncharacterized ABC tra 99.8 2.1E-19 7.1E-24 221.6 8.5 141 4-151 425-578 (598)
118 2og2_A Putative signal recogni 99.8 1.6E-20 5.6E-25 214.2 -1.3 153 603-784 148-313 (359)
119 2dpy_A FLII, flagellum-specifi 99.8 2.5E-20 8.7E-25 219.3 -2.9 175 598-811 144-339 (438)
120 2o5v_A DNA replication and rep 99.7 3.6E-18 1.2E-22 195.3 13.3 80 725-813 265-353 (359)
121 3qkt_A DNA double-strand break 99.7 2.9E-17 9.9E-22 188.6 18.2 76 723-800 246-327 (339)
122 3pih_A Uvrabc system protein A 99.7 2.9E-18 9.8E-23 216.3 6.3 163 626-813 382-557 (916)
123 2cbz_A Multidrug resistance-as 99.7 6.7E-18 2.3E-22 183.1 7.9 127 15-149 79-215 (237)
124 1sgw_A Putative ABC transporte 99.7 1E-17 3.5E-22 178.0 8.9 121 7-136 77-207 (214)
125 1cr0_A DNA primase/helicase; R 99.7 1.5E-18 5.1E-23 195.9 2.4 185 599-805 22-237 (296)
126 3aez_A Pantothenate kinase; tr 99.7 9.6E-20 3.3E-24 205.4 -7.9 123 609-758 87-209 (312)
127 4ad8_A DNA repair protein RECN 99.7 1.3E-17 4.3E-22 202.6 8.2 75 724-801 395-472 (517)
128 2pze_A Cystic fibrosis transme 99.7 1.2E-17 4E-22 180.3 7.0 125 17-149 84-216 (229)
129 2r6f_A Excinuclease ABC subuni 99.7 1.1E-16 3.7E-21 200.0 15.2 135 672-814 450-598 (972)
130 2jeo_A Uridine-cytidine kinase 99.7 1.9E-18 6.6E-23 189.2 -1.2 165 597-795 10-174 (245)
131 3thx_A DNA mismatch repair pro 99.7 3.2E-17 1.1E-21 207.9 7.6 150 598-812 648-809 (934)
132 2bbs_A Cystic fibrosis transme 99.7 4.6E-17 1.6E-21 181.1 6.5 125 17-150 114-246 (290)
133 1tf7_A KAIC; homohexamer, hexa 99.7 1E-16 3.5E-21 195.0 9.5 156 606-804 275-444 (525)
134 2obl_A ESCN; ATPase, hydrolase 99.7 9.4E-18 3.2E-22 191.6 0.1 176 598-811 58-250 (347)
135 1tf7_A KAIC; homohexamer, hexa 99.6 3.4E-19 1.2E-23 216.8 -12.6 168 598-801 24-209 (525)
136 2eyu_A Twitching motility prot 99.6 4.4E-17 1.5E-21 179.1 5.1 131 600-800 15-146 (261)
137 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 2.5E-16 8.7E-21 156.8 10.0 76 723-800 55-136 (148)
138 2o8b_B DNA mismatch repair pro 99.6 2.8E-17 9.7E-22 211.2 3.2 158 598-811 768-937 (1022)
139 2ygr_A Uvrabc system protein A 99.6 1.9E-16 6.4E-21 198.6 10.1 135 671-813 466-614 (993)
140 2ehv_A Hypothetical protein PH 99.6 2.1E-17 7.1E-22 181.6 -1.9 169 601-800 18-206 (251)
141 3thx_B DNA mismatch repair pro 99.6 4.2E-17 1.4E-21 206.1 -0.6 145 598-796 659-805 (918)
142 1rj9_A FTSY, signal recognitio 99.6 3.7E-17 1.3E-21 183.3 -1.5 148 611-785 101-258 (304)
143 2qnr_A Septin-2, protein NEDD5 99.6 8E-18 2.7E-22 189.4 -7.9 157 597-786 9-168 (301)
144 3asz_A Uridine kinase; cytidin 99.6 2.6E-18 9.1E-23 183.7 -11.6 145 609-785 3-161 (211)
145 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 1.6E-15 5.6E-20 151.0 7.3 76 58-136 55-136 (148)
146 3szr_A Interferon-induced GTP- 99.6 1.1E-16 3.9E-21 196.8 -1.7 167 606-811 42-232 (608)
147 1ewq_A DNA mismatch repair pro 99.6 3.2E-16 1.1E-20 195.5 2.0 133 598-792 565-703 (765)
148 4a74_A DNA repair and recombin 99.6 1.6E-16 5.5E-21 172.1 -0.6 151 607-801 20-199 (231)
149 1pzn_A RAD51, DNA repair and r 99.6 1.2E-16 4.3E-21 183.3 -3.6 166 600-810 118-309 (349)
150 1wb9_A DNA mismatch repair pro 99.5 2.8E-15 9.6E-20 188.2 5.4 157 598-810 594-752 (800)
151 3jvv_A Twitching mobility prot 99.5 4.8E-15 1.6E-19 169.7 5.4 127 608-801 119-245 (356)
152 1nlf_A Regulatory protein REPA 99.5 2.1E-14 7.3E-19 160.3 10.4 151 608-786 26-182 (279)
153 2i3b_A HCR-ntpase, human cance 99.5 9.5E-17 3.2E-21 167.4 -8.4 158 612-810 1-170 (189)
154 3qf7_A RAD50; ABC-ATPase, ATPa 99.5 1.5E-14 5.2E-19 167.1 6.3 81 59-142 278-364 (365)
155 2qag_C Septin-7; cell cycle, c 99.5 2.1E-15 7.2E-20 175.8 -1.2 152 598-786 23-178 (418)
156 1pui_A ENGB, probable GTP-bind 99.5 9.8E-16 3.3E-20 163.3 -3.7 180 574-777 4-202 (210)
157 2w0m_A SSO2452; RECA, SSPF, un 99.5 6.5E-15 2.2E-19 159.6 2.2 167 599-801 9-191 (235)
158 2qag_B Septin-6, protein NEDD5 99.4 1.3E-14 4.5E-19 167.9 -1.3 173 599-784 28-218 (427)
159 3kta_B Chromosome segregation 99.4 3.4E-13 1.2E-17 137.8 9.1 74 724-800 63-140 (173)
160 4aby_A DNA repair protein RECN 99.4 3.1E-13 1.1E-17 159.9 8.3 80 61-144 296-381 (415)
161 1s96_A Guanylate kinase, GMP k 99.4 1.2E-14 4E-19 155.4 -5.0 126 608-786 12-141 (219)
162 2bdt_A BH3686; alpha-beta prot 99.4 1.1E-15 3.9E-20 160.2 -13.8 167 612-812 2-180 (189)
163 2cvh_A DNA repair and recombin 99.3 4.4E-13 1.5E-17 143.8 6.0 155 599-802 6-185 (220)
164 2ewv_A Twitching motility prot 99.3 2.9E-13 1E-17 156.5 4.1 131 600-800 126-257 (372)
165 3kta_B Chromosome segregation 99.3 1.4E-12 4.7E-17 133.3 8.2 74 59-136 63-140 (173)
166 1zp6_A Hypothetical protein AT 99.3 6.7E-15 2.3E-19 154.5 -9.6 142 608-771 5-147 (191)
167 1nij_A Hypothetical protein YJ 99.3 5.5E-16 1.9E-20 176.1 -19.5 156 613-786 5-190 (318)
168 2gza_A Type IV secretion syste 99.3 4E-13 1.4E-17 155.0 3.6 137 601-802 164-302 (361)
169 1lw7_A Transcriptional regulat 99.3 5.3E-15 1.8E-19 171.7 -13.8 166 601-799 157-341 (365)
170 2bbw_A Adenylate kinase 4, AK4 99.3 1.5E-14 5E-19 158.5 -9.9 146 611-774 26-199 (246)
171 2npi_A Protein CLP1; CLP1-PCF1 99.3 2.1E-13 7.2E-18 161.3 -1.5 103 34-149 216-336 (460)
172 2yhs_A FTSY, cell division pro 99.3 2E-13 6.7E-18 159.8 -1.8 153 602-783 283-447 (503)
173 2o5v_A DNA replication and rep 99.3 1.7E-12 5.7E-17 148.4 5.8 81 60-149 265-354 (359)
174 1e69_A Chromosome segregation 99.3 3.6E-12 1.2E-16 145.1 8.5 86 59-148 218-310 (322)
175 2f1r_A Molybdopterin-guanine d 99.3 2.4E-14 8.3E-19 146.4 -8.8 138 613-775 3-163 (171)
176 2rcn_A Probable GTPase ENGC; Y 99.3 1.9E-12 6.5E-17 147.0 5.7 122 602-740 206-328 (358)
177 1htw_A HI0065; nucleotide-bind 99.2 3E-13 1E-17 136.5 -3.2 80 597-682 18-97 (158)
178 3auy_A DNA double-strand break 99.2 1.8E-11 6.1E-16 142.1 11.1 78 724-804 279-363 (371)
179 4ad8_A DNA repair protein RECN 99.2 9.7E-12 3.3E-16 150.9 8.5 77 59-139 395-474 (517)
180 2qm8_A GTPase/ATPase; G protei 99.2 4.5E-14 1.5E-18 161.2 -11.6 164 598-773 41-260 (337)
181 3e70_C DPA, signal recognition 99.2 1.1E-12 3.7E-17 148.4 -0.5 143 609-784 126-278 (328)
182 3qkt_A DNA double-strand break 99.2 8E-12 2.7E-16 143.2 6.4 75 59-136 247-327 (339)
183 2kjq_A DNAA-related protein; s 99.2 1.2E-11 3.9E-16 123.9 5.6 44 741-785 81-125 (149)
184 1n0w_A DNA repair protein RAD5 99.2 1.9E-11 6.6E-16 133.0 6.9 136 607-786 19-175 (243)
185 1udx_A The GTP-binding protein 99.2 1.6E-12 5.5E-17 151.4 -2.8 173 602-799 147-322 (416)
186 1odf_A YGR205W, hypothetical 3 99.1 2.1E-12 7.1E-17 143.9 -2.4 134 610-760 29-169 (290)
187 3ec2_A DNA replication protein 99.1 3.6E-11 1.2E-15 124.6 6.8 47 741-787 98-145 (180)
188 3auy_A DNA double-strand break 99.1 6.6E-11 2.2E-15 137.4 8.4 100 34-137 243-360 (371)
189 1ye8_A Protein THEP1, hypothet 99.1 5.2E-11 1.8E-15 122.9 6.4 76 59-142 75-159 (178)
190 1w1w_A Structural maintenance 99.1 7.4E-11 2.5E-15 139.9 8.5 75 725-801 333-411 (430)
191 1p9r_A General secretion pathw 99.1 2.9E-13 9.8E-18 158.0 -13.5 137 595-748 152-314 (418)
192 2oap_1 GSPE-2, type II secreti 99.1 3.7E-14 1.3E-18 170.0 -21.7 172 599-786 247-451 (511)
193 2yv5_A YJEQ protein; hydrolase 99.0 8.1E-12 2.8E-16 140.5 -2.8 123 608-739 161-301 (302)
194 3c8u_A Fructokinase; YP_612366 99.0 1.9E-12 6.5E-17 137.7 -9.5 120 609-753 19-140 (208)
195 3lda_A DNA repair protein RAD5 99.0 1E-10 3.5E-15 135.6 3.8 134 607-784 173-327 (400)
196 1sxj_E Activator 1 40 kDa subu 99.0 2.3E-10 8E-15 132.1 6.0 163 615-823 39-203 (354)
197 1w1w_A Structural maintenance 99.0 4.6E-10 1.6E-14 133.0 7.3 75 60-137 333-411 (430)
198 3b85_A Phosphate starvation-in 98.9 1.9E-10 6.5E-15 121.6 2.7 52 64-122 108-159 (208)
199 4gp7_A Metallophosphoesterase; 98.9 1.2E-10 4.2E-15 119.5 -0.2 59 61-120 84-158 (171)
200 1in4_A RUVB, holliday junction 98.9 1.6E-11 5.5E-16 140.5 -9.1 153 598-774 30-195 (334)
201 2x8a_A Nuclear valosin-contain 98.9 1.5E-12 5.2E-17 144.4 -18.3 128 598-753 32-163 (274)
202 1t9h_A YLOQ, probable GTPase E 98.8 1.8E-10 6.3E-15 128.4 -1.7 119 607-733 168-303 (307)
203 1lvg_A Guanylate kinase, GMP k 98.8 2E-13 7E-18 143.9 -25.0 55 736-799 116-171 (198)
204 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 5.1E-12 1.8E-16 145.6 -15.8 171 608-813 16-210 (392)
205 2v9p_A Replication protein E1; 98.8 3.2E-10 1.1E-14 126.2 -2.0 88 35-155 183-270 (305)
206 1u0l_A Probable GTPase ENGC; p 98.8 4.7E-10 1.6E-14 126.1 -1.8 101 608-717 165-288 (301)
207 1sq5_A Pantothenate kinase; P- 98.8 1.6E-10 5.4E-15 130.5 -6.1 129 600-758 49-199 (308)
208 1tq4_A IIGP1, interferon-induc 98.7 1.3E-09 4.3E-14 126.6 0.7 99 34-139 135-255 (413)
209 1vma_A Cell division protein F 98.7 3.1E-09 1.1E-13 118.9 3.2 113 605-772 97-212 (306)
210 2ius_A DNA translocase FTSK; n 98.7 3.2E-10 1.1E-14 134.5 -6.2 176 604-799 159-361 (512)
211 2dr3_A UPF0273 protein PH0284; 98.7 1.5E-09 5.2E-14 118.2 -1.7 60 742-801 127-196 (247)
212 1ls1_A Signal recognition part 98.7 3.2E-08 1.1E-12 110.6 8.7 127 603-781 91-218 (295)
213 2r6a_A DNAB helicase, replicat 98.6 1E-08 3.5E-13 122.2 3.9 178 599-801 190-398 (454)
214 3lnc_A Guanylate kinase, GMP k 98.6 4E-11 1.4E-15 129.7 -16.0 184 599-797 14-206 (231)
215 1iy2_A ATP-dependent metallopr 98.6 4.9E-11 1.7E-15 132.9 -17.7 124 599-746 62-190 (278)
216 1ixz_A ATP-dependent metallopr 98.5 7.3E-11 2.5E-15 129.6 -17.3 128 599-752 38-170 (254)
217 1oix_A RAS-related protein RAB 98.5 1.4E-08 4.7E-13 106.1 0.5 38 731-770 151-188 (191)
218 2zr9_A Protein RECA, recombina 98.5 8.9E-08 3E-12 109.4 7.0 78 732-810 126-237 (349)
219 3thx_A DNA mismatch repair pro 98.5 9E-08 3.1E-12 121.7 7.5 90 57-148 718-810 (934)
220 3euj_A Chromosome partition pr 98.5 1.1E-08 3.9E-13 120.4 -0.8 52 599-653 17-68 (483)
221 3tr0_A Guanylate kinase, GMP k 98.5 7.2E-09 2.5E-13 109.5 -3.5 65 606-676 1-68 (205)
222 2px0_A Flagellar biosynthesis 98.5 1E-07 3.5E-12 106.4 5.5 141 610-808 103-247 (296)
223 3k1j_A LON protease, ATP-depen 98.4 3.7E-09 1.3E-13 130.6 -7.1 160 598-770 46-227 (604)
224 2pt7_A CAG-ALFA; ATPase, prote 98.4 9.5E-08 3.3E-12 108.4 4.8 69 63-141 225-293 (330)
225 1cr0_A DNA primase/helicase; R 98.4 3.5E-07 1.2E-11 102.5 7.3 79 61-140 130-237 (296)
226 2ce7_A Cell division protein F 98.2 9.9E-07 3.4E-11 104.4 6.7 59 728-786 93-165 (476)
227 2f9l_A RAB11B, member RAS onco 98.2 1.1E-06 3.6E-11 92.2 4.7 37 734-772 130-166 (199)
228 3hr8_A Protein RECA; alpha and 98.2 5.4E-07 1.8E-11 102.5 2.5 30 607-636 56-85 (356)
229 3thx_B DNA mismatch repair pro 98.1 5.1E-07 1.8E-11 114.5 1.9 81 59-142 734-816 (918)
230 2qtf_A Protein HFLX, GTP-bindi 98.1 1.9E-06 6.4E-11 99.0 6.3 148 614-773 181-353 (364)
231 1qhl_A Protein (cell division 98.1 5.9E-08 2E-12 103.4 -6.1 59 606-667 22-91 (227)
232 1nlf_A Regulatory protein REPA 98.1 2.8E-06 9.4E-11 94.3 6.2 80 35-122 98-182 (279)
233 4eun_A Thermoresistant glucoki 98.0 1.4E-07 4.8E-12 99.2 -4.8 41 606-652 23-63 (200)
234 2xau_A PRE-mRNA-splicing facto 98.0 7.3E-06 2.5E-10 103.5 9.0 78 725-803 190-269 (773)
235 1znw_A Guanylate kinase, GMP k 98.0 2.6E-07 8.7E-12 97.8 -4.7 80 40-136 119-202 (207)
236 2o8b_B DNA mismatch repair pro 98.0 5.1E-06 1.7E-10 107.1 6.2 83 61-146 852-937 (1022)
237 2w0m_A SSO2452; RECA, SSPF, un 97.9 5.4E-06 1.8E-10 88.9 5.4 79 61-139 104-193 (235)
238 4a1f_A DNAB helicase, replicat 97.9 4.2E-06 1.4E-10 94.4 4.4 129 600-783 34-164 (338)
239 2cvh_A DNA repair and recombin 97.9 1E-05 3.6E-10 85.9 7.2 78 61-138 85-185 (220)
240 2e87_A Hypothetical protein PH 97.9 1.8E-05 6E-10 91.1 9.5 60 725-786 231-293 (357)
241 3sop_A Neuronal-specific septi 97.9 1.9E-06 6.6E-11 94.7 0.5 60 46-119 89-148 (270)
242 1z6g_A Guanylate kinase; struc 97.9 3.4E-07 1.2E-11 97.7 -5.4 66 34-108 105-175 (218)
243 2dhr_A FTSH; AAA+ protein, hex 97.9 9.1E-08 3.1E-12 113.9 -11.0 129 599-753 53-186 (499)
244 3aez_A Pantothenate kinase; tr 97.9 1.8E-06 6E-11 97.0 -0.2 55 33-93 155-209 (312)
245 3nwj_A ATSK2; P loop, shikimat 97.9 1.6E-06 5.4E-11 94.0 -1.0 52 573-636 17-72 (250)
246 2j41_A Guanylate kinase; GMP, 97.8 6.9E-06 2.4E-10 86.4 2.3 30 608-637 2-31 (207)
247 3b9q_A Chloroplast SRP recepto 97.8 9.9E-06 3.4E-10 90.5 3.7 87 39-140 188-284 (302)
248 3kta_A Chromosome segregation 97.8 7E-06 2.4E-10 84.6 2.1 37 600-637 13-51 (182)
249 1zu4_A FTSY; GTPase, signal re 97.7 4E-06 1.4E-10 94.4 -0.1 49 602-652 95-143 (320)
250 4e22_A Cytidylate kinase; P-lo 97.7 2E-06 6.7E-11 93.9 -2.7 63 601-668 19-96 (252)
251 3vaa_A Shikimate kinase, SK; s 97.7 1.1E-05 3.8E-10 84.5 3.0 39 598-636 11-49 (199)
252 1pzn_A RAD51, DNA repair and r 97.7 1.8E-05 6.3E-10 90.3 4.5 110 34-146 180-310 (349)
253 2dy1_A Elongation factor G; tr 97.7 8E-06 2.7E-10 101.4 1.6 133 606-787 3-138 (665)
254 3t34_A Dynamin-related protein 97.7 6.9E-05 2.4E-09 86.2 8.7 57 726-783 155-212 (360)
255 2dpy_A FLII, flagellum-specifi 97.6 3.3E-06 1.1E-10 99.2 -3.2 78 59-149 257-342 (438)
256 3asz_A Uridine kinase; cytidin 97.6 1.3E-06 4.3E-11 92.6 -6.3 82 34-120 68-160 (211)
257 2i3b_A HCR-ntpase, human cance 97.6 1.4E-05 4.7E-10 82.9 1.7 85 52-144 76-169 (189)
258 2og2_A Putative signal recogni 97.5 4.1E-05 1.4E-09 87.2 4.4 66 39-119 245-312 (359)
259 1jjv_A Dephospho-COA kinase; P 97.5 9.2E-06 3.2E-10 85.5 -0.9 71 726-800 60-131 (206)
260 1fnn_A CDC6P, cell division co 97.5 0.00015 5.3E-09 84.0 9.2 43 742-785 124-169 (389)
261 3a00_A Guanylate kinase, GMP k 97.5 2.2E-05 7.5E-10 81.3 1.8 26 612-637 1-26 (186)
262 1wb9_A DNA mismatch repair pro 97.5 7.6E-05 2.6E-09 93.9 6.6 81 61-144 670-751 (800)
263 2vp4_A Deoxynucleoside kinase; 97.5 1.4E-05 4.8E-10 85.8 -0.1 40 607-652 15-54 (230)
264 3uie_A Adenylyl-sulfate kinase 97.5 1.9E-05 6.4E-10 82.8 0.8 51 599-652 12-64 (200)
265 1kgd_A CASK, peripheral plasma 97.5 4E-05 1.4E-09 78.8 3.0 36 611-647 4-39 (180)
266 3b9p_A CG5977-PA, isoform A; A 97.5 0.00039 1.3E-08 77.4 11.3 59 727-785 97-169 (297)
267 2obl_A ESCN; ATPase, hydrolase 97.5 6.6E-06 2.3E-10 93.6 -3.4 78 59-149 170-253 (347)
268 2ehv_A Hypothetical protein PH 97.4 7.3E-05 2.5E-09 81.0 4.8 64 72-136 129-206 (251)
269 1ega_A Protein (GTP-binding pr 97.4 0.00024 8.4E-09 79.3 8.8 63 726-796 101-169 (301)
270 1ewq_A DNA mismatch repair pro 97.4 5.9E-05 2E-09 94.3 3.8 62 57-122 632-699 (765)
271 1svm_A Large T antigen; AAA+ f 97.4 2.7E-05 9.1E-10 89.4 0.5 143 599-754 156-312 (377)
272 2eyu_A Twitching motility prot 97.3 0.00016 5.4E-09 79.0 5.9 62 66-137 86-147 (261)
273 4a74_A DNA repair and recombin 97.3 7.6E-05 2.6E-09 79.7 3.3 104 34-139 74-201 (231)
274 3bh0_A DNAB-like replicative h 97.3 0.00018 6.2E-09 81.0 5.7 132 599-783 55-189 (315)
275 3tau_A Guanylate kinase, GMP k 97.3 0.0001 3.5E-09 77.7 3.5 28 610-637 6-33 (208)
276 1v5w_A DMC1, meiotic recombina 97.3 0.0013 4.5E-08 74.8 12.7 140 607-785 117-274 (343)
277 2z4s_A Chromosomal replication 97.2 5.5E-05 1.9E-09 89.3 0.7 72 742-813 193-265 (440)
278 1pui_A ENGB, probable GTP-bind 97.2 0.00015 5.2E-09 76.1 3.6 73 36-114 129-203 (210)
279 3tqc_A Pantothenate kinase; bi 97.2 2.3E-05 7.9E-10 87.8 -3.0 40 598-637 72-117 (321)
280 3kl4_A SRP54, signal recogniti 97.2 0.00053 1.8E-08 79.8 8.2 27 611-637 96-122 (433)
281 2qt1_A Nicotinamide riboside k 97.1 0.0002 6.7E-09 75.3 3.8 29 608-636 17-45 (207)
282 2z43_A DNA repair and recombin 97.1 0.00098 3.4E-08 75.3 9.8 145 601-784 95-257 (324)
283 3ney_A 55 kDa erythrocyte memb 97.1 0.00016 5.5E-09 74.9 2.6 29 609-637 16-44 (197)
284 1rz3_A Hypothetical protein rb 97.1 6.2E-05 2.1E-09 78.9 -0.9 42 608-651 18-59 (201)
285 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00033 1.1E-08 69.4 3.9 30 603-633 15-44 (149)
286 1knq_A Gluconate kinase; ALFA/ 97.0 0.00027 9.3E-09 72.0 2.9 36 610-651 6-41 (175)
287 2ffh_A Protein (FFH); SRP54, s 97.0 0.00038 1.3E-08 80.9 4.4 46 603-652 91-136 (425)
288 3jvv_A Twitching mobility prot 97.0 0.00056 1.9E-08 78.0 5.6 59 70-138 188-246 (356)
289 1ypw_A Transitional endoplasmi 96.9 0.00053 1.8E-08 87.0 5.8 31 607-637 233-263 (806)
290 2qby_A CDC6 homolog 1, cell di 96.9 0.0002 6.9E-09 82.8 1.1 27 610-636 43-69 (386)
291 2qnr_A Septin-2, protein NEDD5 96.9 0.00021 7.1E-09 79.9 1.1 53 59-119 112-165 (301)
292 1kag_A SKI, shikimate kinase I 96.9 0.00033 1.1E-08 71.1 2.4 27 611-637 3-29 (173)
293 3cr8_A Sulfate adenylyltranfer 96.8 0.00013 4.5E-09 87.8 -1.0 43 607-651 364-408 (552)
294 3ice_A Transcription terminati 96.8 0.0002 6.9E-09 80.7 0.5 51 573-635 133-197 (422)
295 3cf0_A Transitional endoplasmi 96.7 0.00065 2.2E-08 75.9 3.6 30 607-636 44-73 (301)
296 3llm_A ATP-dependent RNA helic 96.7 0.00058 2E-08 73.3 2.6 65 727-793 162-227 (235)
297 3m6a_A ATP-dependent protease 96.6 0.00044 1.5E-08 83.8 1.4 49 599-650 96-144 (543)
298 2gj8_A MNME, tRNA modification 96.6 0.0023 7.9E-08 64.8 6.1 27 610-636 2-28 (172)
299 3lxx_A GTPase IMAP family memb 96.5 0.012 4E-07 63.1 11.8 42 742-783 111-154 (239)
300 2f1r_A Molybdopterin-guanine d 96.5 0.00029 1E-08 71.5 -0.9 40 35-81 84-124 (171)
301 4eaq_A DTMP kinase, thymidylat 96.5 0.0011 3.9E-08 70.7 3.4 37 601-637 12-51 (229)
302 2p67_A LAO/AO transport system 96.5 0.00057 2E-08 77.8 0.8 39 598-636 42-80 (341)
303 3ec2_A DNA replication protein 96.5 0.0029 9.8E-08 64.6 6.0 51 73-124 95-146 (180)
304 1mky_A Probable GTP-binding pr 96.4 0.0021 7E-08 75.9 5.4 69 614-682 182-263 (439)
305 1m2o_B GTP-binding protein SAR 96.4 0.0026 9.1E-08 65.5 5.4 49 600-649 12-66 (190)
306 3qks_A DNA double-strand break 96.4 0.0017 5.8E-08 67.9 3.9 29 604-633 16-44 (203)
307 2jeo_A Uridine-cytidine kinase 96.4 0.001 3.4E-08 71.9 1.9 65 37-120 100-164 (245)
308 2pez_A Bifunctional 3'-phospho 96.3 0.0017 5.8E-08 66.3 3.2 27 610-636 3-29 (179)
309 1f6b_A SAR1; gtpases, N-termin 96.3 0.0011 3.9E-08 68.8 1.8 36 599-635 13-48 (198)
310 3h4m_A Proteasome-activating n 96.2 0.0044 1.5E-07 68.3 6.4 28 609-636 48-75 (285)
311 1cke_A CK, MSSA, protein (cyti 96.2 0.0018 6.2E-08 68.8 3.0 56 612-667 5-73 (227)
312 1l8q_A Chromosomal replication 96.2 0.0072 2.5E-07 68.1 8.2 45 741-785 96-141 (324)
313 1y63_A LMAJ004144AAA protein; 96.2 0.0019 6.5E-08 66.4 3.0 32 604-635 2-33 (184)
314 1odf_A YGR205W, hypothetical 3 96.2 0.0007 2.4E-08 75.0 -0.3 58 35-95 106-169 (290)
315 1n0w_A DNA repair protein RAD5 96.2 0.0046 1.6E-07 66.2 6.1 79 61-139 99-210 (243)
316 2www_A Methylmalonic aciduria 96.2 0.00078 2.7E-08 76.9 -0.1 39 610-650 72-110 (349)
317 1u94_A RECA protein, recombina 96.2 0.056 1.9E-06 61.3 15.1 35 600-634 49-85 (356)
318 2qor_A Guanylate kinase; phosp 96.1 0.002 7E-08 67.3 2.8 29 608-636 8-36 (204)
319 2qag_A Septin-2, protein NEDD5 96.1 0.00072 2.4E-08 77.5 -0.9 33 598-636 29-61 (361)
320 2bdt_A BH3686; alpha-beta prot 96.1 0.0004 1.4E-08 71.8 -2.9 80 62-148 96-181 (189)
321 2q6t_A DNAB replication FORK h 96.0 0.016 5.4E-07 68.3 10.2 130 600-783 188-318 (444)
322 3szr_A Interferon-induced GTP- 96.0 0.0012 4.2E-08 80.9 0.5 89 64-152 132-238 (608)
323 1m7g_A Adenylylsulfate kinase; 96.0 0.0012 4.1E-08 69.5 -0.0 40 608-649 21-62 (211)
324 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0011 3.7E-08 74.6 -0.5 38 599-636 9-48 (359)
325 3d8b_A Fidgetin-like protein 1 95.8 0.019 6.6E-07 65.5 9.4 27 610-636 115-141 (357)
326 2wji_A Ferrous iron transport 95.8 0.0092 3.2E-07 59.7 5.8 23 614-636 5-27 (165)
327 2v1u_A Cell division control p 95.7 0.011 3.9E-07 67.9 6.8 27 610-636 42-68 (387)
328 2if2_A Dephospho-COA kinase; a 95.7 0.0039 1.3E-07 65.0 2.6 21 614-634 3-23 (204)
329 2wjg_A FEOB, ferrous iron tran 95.7 0.011 3.7E-07 60.4 5.8 22 614-635 9-30 (188)
330 1np6_A Molybdopterin-guanine d 95.5 0.0061 2.1E-07 61.9 3.2 38 613-650 7-45 (174)
331 2ohf_A Protein OLA1, GTP-bindi 95.5 0.0059 2E-07 70.0 3.3 45 606-650 16-69 (396)
332 2yvu_A Probable adenylyl-sulfa 95.5 0.0063 2.1E-07 62.4 3.1 28 609-636 10-37 (186)
333 1lw7_A Transcriptional regulat 95.4 0.003 1E-07 72.6 0.6 83 60-146 258-350 (365)
334 3cm0_A Adenylate kinase; ATP-b 95.4 0.0069 2.3E-07 62.0 3.2 25 610-634 2-26 (186)
335 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.066 2.3E-06 60.1 11.6 28 609-636 42-69 (322)
336 1sxj_C Activator 1 40 kDa subu 95.4 0.0023 7.7E-08 72.8 -0.8 39 598-636 30-70 (340)
337 3t61_A Gluconokinase; PSI-biol 95.3 0.006 2.1E-07 63.5 2.3 25 612-636 18-42 (202)
338 1j8m_F SRP54, signal recogniti 95.3 0.0022 7.4E-08 71.3 -1.3 46 603-651 89-135 (297)
339 2b8t_A Thymidine kinase; deoxy 95.2 0.027 9.1E-07 59.5 6.9 53 743-800 89-150 (223)
340 1qhx_A CPT, protein (chloramph 95.2 0.0097 3.3E-07 60.3 3.4 26 612-637 3-28 (178)
341 3kb2_A SPBC2 prophage-derived 95.1 0.0099 3.4E-07 59.8 3.1 23 614-636 3-25 (173)
342 1lv7_A FTSH; alpha/beta domain 95.0 0.0078 2.7E-07 65.3 2.4 34 601-636 36-69 (257)
343 2bbw_A Adenylate kinase 4, AK4 95.0 0.0057 2E-07 65.9 1.0 41 61-108 153-198 (246)
344 3r20_A Cytidylate kinase; stru 94.9 0.011 3.8E-07 62.8 3.2 24 612-635 9-32 (233)
345 2zej_A Dardarin, leucine-rich 94.9 0.011 3.7E-07 60.3 3.1 22 614-635 4-25 (184)
346 1q3t_A Cytidylate kinase; nucl 94.9 0.01 3.5E-07 63.4 3.0 27 609-635 13-39 (236)
347 2p5t_B PEZT; postsegregational 94.9 0.0078 2.7E-07 65.2 1.9 46 601-651 22-67 (253)
348 2ewv_A Twitching motility prot 94.9 0.02 7E-07 65.6 5.4 60 68-137 199-258 (372)
349 2kjq_A DNAA-related protein; s 94.9 0.028 9.6E-07 55.4 5.6 50 74-125 79-129 (149)
350 1ex7_A Guanylate kinase; subst 94.8 0.013 4.3E-07 60.1 2.9 23 614-636 3-25 (186)
351 2rhm_A Putative kinase; P-loop 94.7 0.014 4.6E-07 60.0 3.0 26 610-635 3-28 (193)
352 1kht_A Adenylate kinase; phosp 94.7 0.015 5E-07 59.7 3.3 24 612-635 3-26 (192)
353 2ze6_A Isopentenyl transferase 94.5 0.015 5.2E-07 62.9 3.0 24 613-636 2-25 (253)
354 3trf_A Shikimate kinase, SK; a 94.4 0.018 6.3E-07 58.7 3.2 25 611-635 4-28 (185)
355 2qag_C Septin-7; cell cycle, c 94.4 0.012 4.2E-07 68.2 2.0 54 60-119 118-175 (418)
356 3lw7_A Adenylate kinase relate 94.3 0.019 6.5E-07 57.6 3.1 19 614-632 3-21 (179)
357 1vht_A Dephospho-COA kinase; s 94.2 0.022 7.7E-07 59.9 3.5 24 611-634 3-26 (218)
358 3iij_A Coilin-interacting nucl 94.2 0.019 6.4E-07 58.4 2.7 25 610-634 9-33 (180)
359 2v54_A DTMP kinase, thymidylat 94.1 0.024 8.1E-07 58.8 3.4 26 611-636 3-28 (204)
360 2jaq_A Deoxyguanosine kinase; 94.1 0.023 7.7E-07 58.9 3.2 23 614-636 2-24 (205)
361 1gvn_B Zeta; postsegregational 94.1 0.022 7.7E-07 62.8 3.2 27 610-636 31-57 (287)
362 2plr_A DTMP kinase, probable t 94.1 0.026 8.8E-07 58.9 3.6 26 611-636 3-28 (213)
363 2r6a_A DNAB helicase, replicat 94.1 0.074 2.5E-06 62.8 7.9 79 60-140 295-401 (454)
364 2wwf_A Thymidilate kinase, put 94.0 0.026 8.8E-07 58.9 3.2 26 610-635 8-33 (212)
365 1ly1_A Polynucleotide kinase; 94.0 0.027 9.3E-07 56.9 3.3 22 613-634 3-24 (181)
366 1xjc_A MOBB protein homolog; s 93.9 0.025 8.4E-07 56.9 2.8 23 613-635 5-27 (169)
367 1via_A Shikimate kinase; struc 93.9 0.026 8.7E-07 57.1 2.9 23 614-636 6-28 (175)
368 1q57_A DNA primase/helicase; d 93.9 0.24 8.1E-06 59.2 11.9 34 601-634 231-264 (503)
369 2c95_A Adenylate kinase 1; tra 93.9 0.026 8.7E-07 58.1 2.9 26 610-635 7-32 (196)
370 3lda_A DNA repair protein RAD5 93.8 0.04 1.4E-06 63.5 4.8 101 35-139 228-364 (400)
371 1sxj_E Activator 1 40 kDa subu 93.8 0.083 2.8E-06 59.9 7.3 64 75-147 131-194 (354)
372 3k53_A Ferrous iron transport 93.7 0.025 8.7E-07 61.8 2.8 23 614-636 5-27 (271)
373 2bwj_A Adenylate kinase 5; pho 93.7 0.014 4.9E-07 60.2 0.6 27 609-635 9-35 (199)
374 1nn5_A Similar to deoxythymidy 93.7 0.03 1E-06 58.5 3.1 26 610-635 7-32 (215)
375 1uf9_A TT1252 protein; P-loop, 93.6 0.032 1.1E-06 57.7 3.3 24 612-635 8-31 (203)
376 1gtv_A TMK, thymidylate kinase 93.6 0.015 5E-07 60.9 0.6 24 614-637 2-25 (214)
377 1tev_A UMP-CMP kinase; ploop, 93.5 0.037 1.3E-06 56.7 3.4 23 612-634 3-25 (196)
378 1ko7_A HPR kinase/phosphatase; 93.5 0.041 1.4E-06 60.9 3.9 36 599-635 132-167 (314)
379 1nks_A Adenylate kinase; therm 93.5 0.033 1.1E-06 57.0 2.9 23 614-636 3-25 (194)
380 3cmw_A Protein RECA, recombina 93.5 0.15 5.1E-06 68.5 9.8 28 608-635 728-755 (1706)
381 1aky_A Adenylate kinase; ATP:A 93.3 0.04 1.4E-06 58.0 3.4 26 610-635 2-27 (220)
382 3bgw_A DNAB-like replicative h 93.2 0.046 1.6E-06 64.2 4.0 35 600-634 185-219 (444)
383 2vli_A Antibiotic resistance p 93.2 0.032 1.1E-06 56.6 2.3 25 611-635 4-28 (183)
384 3ihw_A Centg3; RAS, centaurin, 93.1 0.058 2E-06 54.9 4.1 21 614-634 22-42 (184)
385 3vfd_A Spastin; ATPase, microt 93.1 0.24 8.2E-06 57.1 9.8 27 610-636 146-172 (389)
386 3q72_A GTP-binding protein RAD 93.1 0.039 1.3E-06 54.7 2.7 23 614-636 4-26 (166)
387 3cbq_A GTP-binding protein REM 93.0 0.096 3.3E-06 53.9 5.7 21 614-634 25-45 (195)
388 2ged_A SR-beta, signal recogni 93.0 0.039 1.3E-06 56.4 2.6 23 614-636 50-72 (193)
389 3b1v_A Ferrous iron uptake tra 93.0 0.046 1.6E-06 59.7 3.3 23 614-636 5-27 (272)
390 2z0h_A DTMP kinase, thymidylat 93.0 0.046 1.6E-06 56.2 3.1 23 614-636 2-24 (197)
391 2nzj_A GTP-binding protein REM 92.9 0.046 1.6E-06 54.6 3.0 23 614-636 6-28 (175)
392 1zd8_A GTP:AMP phosphotransfer 92.9 0.046 1.6E-06 57.9 3.1 26 610-635 5-30 (227)
393 2erx_A GTP-binding protein DI- 92.8 0.049 1.7E-06 54.2 3.0 22 614-635 5-26 (172)
394 1z2a_A RAS-related protein RAB 92.8 0.042 1.4E-06 54.5 2.5 22 614-635 7-28 (168)
395 1fzq_A ADP-ribosylation factor 92.8 0.045 1.5E-06 55.6 2.7 23 614-636 18-40 (181)
396 2cdn_A Adenylate kinase; phosp 92.7 0.056 1.9E-06 56.0 3.4 25 611-635 19-43 (201)
397 1jal_A YCHF protein; nucleotid 92.7 0.047 1.6E-06 61.9 3.0 24 612-635 2-25 (363)
398 3lxw_A GTPase IMAP family memb 92.7 0.049 1.7E-06 58.6 3.0 23 614-636 23-45 (247)
399 3q85_A GTP-binding protein REM 92.7 0.052 1.8E-06 54.0 3.0 21 615-635 5-25 (169)
400 3tw8_B RAS-related protein RAB 92.7 0.051 1.8E-06 54.6 3.0 22 614-635 11-32 (181)
401 3ake_A Cytidylate kinase; CMP 92.6 0.048 1.7E-06 56.6 2.8 22 614-635 4-25 (208)
402 2dyk_A GTP-binding protein; GT 92.6 0.048 1.6E-06 53.6 2.6 23 614-636 3-25 (161)
403 1kao_A RAP2A; GTP-binding prot 92.6 0.049 1.7E-06 53.8 2.6 22 614-635 5-26 (167)
404 3fb4_A Adenylate kinase; psych 92.5 0.056 1.9E-06 56.6 3.1 21 614-634 2-22 (216)
405 1zuh_A Shikimate kinase; alpha 92.5 0.059 2E-06 53.9 3.2 23 613-635 8-30 (168)
406 2qmh_A HPR kinase/phosphorylas 92.5 0.095 3.2E-06 53.7 4.6 35 600-635 23-57 (205)
407 2dr3_A UPF0273 protein PH0284; 92.5 0.19 6.4E-06 53.5 7.3 67 71-137 119-196 (247)
408 1u8z_A RAS-related protein RAL 92.5 0.049 1.7E-06 53.8 2.5 22 614-635 6-27 (168)
409 3a4m_A L-seryl-tRNA(SEC) kinas 92.5 0.063 2.2E-06 58.2 3.6 25 611-635 3-27 (260)
410 2ce2_X GTPase HRAS; signaling 92.5 0.046 1.6E-06 53.8 2.3 22 614-635 5-26 (166)
411 1zak_A Adenylate kinase; ATP:A 92.5 0.048 1.6E-06 57.5 2.5 25 611-635 4-28 (222)
412 1rj9_A FTSY, signal recognitio 92.4 0.026 8.9E-07 62.7 0.3 55 61-120 203-257 (304)
413 1ukz_A Uridylate kinase; trans 92.4 0.062 2.1E-06 55.6 3.3 24 612-635 15-38 (203)
414 1z0j_A RAB-22, RAS-related pro 92.4 0.052 1.8E-06 53.9 2.6 23 614-636 8-30 (170)
415 2pbr_A DTMP kinase, thymidylat 92.4 0.061 2.1E-06 55.0 3.1 22 614-635 2-23 (195)
416 1z08_A RAS-related protein RAB 92.4 0.053 1.8E-06 53.9 2.6 22 614-635 8-29 (170)
417 1e6c_A Shikimate kinase; phosp 92.4 0.054 1.8E-06 54.4 2.6 22 614-635 4-25 (173)
418 1svi_A GTP-binding protein YSX 92.4 0.052 1.8E-06 55.5 2.5 23 614-636 25-47 (195)
419 2ius_A DNA translocase FTSK; n 92.3 0.044 1.5E-06 65.0 2.2 83 37-124 247-345 (512)
420 2lkc_A Translation initiation 92.3 0.071 2.4E-06 53.4 3.5 24 612-635 8-31 (178)
421 1wms_A RAB-9, RAB9, RAS-relate 92.3 0.055 1.9E-06 54.2 2.6 23 614-636 9-31 (177)
422 1ek0_A Protein (GTP-binding pr 92.3 0.054 1.9E-06 53.7 2.5 23 614-636 5-27 (170)
423 1c1y_A RAS-related protein RAP 92.3 0.055 1.9E-06 53.5 2.5 22 614-635 5-26 (167)
424 1g16_A RAS-related protein SEC 92.3 0.051 1.7E-06 53.9 2.3 23 614-636 5-27 (170)
425 2pt5_A Shikimate kinase, SK; a 92.2 0.067 2.3E-06 53.4 3.2 22 614-635 2-23 (168)
426 3dl0_A Adenylate kinase; phosp 92.2 0.065 2.2E-06 56.1 3.1 22 614-635 2-23 (216)
427 1ky3_A GTP-binding protein YPT 92.2 0.057 1.9E-06 54.3 2.6 23 614-636 10-32 (182)
428 3tlx_A Adenylate kinase 2; str 92.2 0.071 2.4E-06 57.1 3.5 24 611-634 28-51 (243)
429 1udx_A The GTP-binding protein 92.2 0.054 1.9E-06 62.8 2.6 71 59-134 251-321 (416)
430 3pqc_A Probable GTP-binding pr 92.2 0.057 2E-06 55.0 2.5 23 614-636 25-47 (195)
431 2iyv_A Shikimate kinase, SK; t 92.1 0.055 1.9E-06 55.0 2.4 23 613-635 3-25 (184)
432 1qf9_A UMP/CMP kinase, protein 92.1 0.07 2.4E-06 54.5 3.2 23 612-634 6-28 (194)
433 1wf3_A GTP-binding protein; GT 92.1 0.068 2.3E-06 59.3 3.2 26 610-636 6-31 (301)
434 1moz_A ARL1, ADP-ribosylation 92.1 0.051 1.7E-06 54.9 2.0 22 613-634 19-40 (183)
435 2grj_A Dephospho-COA kinase; T 92.1 0.071 2.4E-06 54.9 3.1 23 612-634 12-34 (192)
436 2fn4_A P23, RAS-related protei 92.0 0.057 2E-06 54.2 2.4 22 614-635 11-32 (181)
437 2cxx_A Probable GTP-binding pr 92.0 0.061 2.1E-06 54.6 2.6 22 615-636 4-25 (190)
438 3t5d_A Septin-7; GTP-binding p 92.0 0.062 2.1E-06 58.7 2.8 22 614-635 10-31 (274)
439 3a8t_A Adenylate isopentenyltr 92.0 0.12 4E-06 57.8 4.9 27 611-637 39-65 (339)
440 3iby_A Ferrous iron transport 92.0 0.064 2.2E-06 58.0 2.8 23 614-636 3-25 (256)
441 2hxs_A RAB-26, RAS-related pro 91.9 0.072 2.5E-06 53.4 2.9 22 614-635 8-29 (178)
442 1r2q_A RAS-related protein RAB 91.9 0.065 2.2E-06 53.1 2.5 22 614-635 8-29 (170)
443 4ag6_A VIRB4 ATPase, type IV s 91.8 0.055 1.9E-06 62.6 2.2 44 743-786 262-308 (392)
444 4dsu_A GTPase KRAS, isoform 2B 91.8 0.067 2.3E-06 54.2 2.6 22 614-635 6-27 (189)
445 2oil_A CATX-8, RAS-related pro 91.8 0.066 2.3E-06 54.7 2.5 22 614-635 27-48 (193)
446 3iev_A GTP-binding protein ERA 91.8 0.077 2.6E-06 59.1 3.2 23 614-636 12-34 (308)
447 1upt_A ARL1, ADP-ribosylation 91.8 0.068 2.3E-06 53.1 2.5 22 614-635 9-30 (171)
448 1r8s_A ADP-ribosylation factor 91.7 0.07 2.4E-06 52.7 2.5 21 615-635 3-23 (164)
449 3clv_A RAB5 protein, putative; 91.7 0.07 2.4E-06 54.7 2.6 22 614-635 9-30 (208)
450 3v9p_A DTMP kinase, thymidylat 91.7 0.072 2.4E-06 56.4 2.6 28 609-636 22-49 (227)
451 3bc1_A RAS-related protein RAB 91.6 0.071 2.4E-06 54.2 2.5 22 614-635 13-34 (195)
452 2dby_A GTP-binding protein; GD 91.6 0.067 2.3E-06 61.0 2.5 21 615-635 4-24 (368)
453 3bos_A Putative DNA replicatio 91.6 0.087 3E-06 55.8 3.3 44 742-785 103-148 (242)
454 1a7j_A Phosphoribulokinase; tr 91.6 0.053 1.8E-06 59.8 1.6 23 612-634 5-27 (290)
455 1uj2_A Uridine-cytidine kinase 91.5 0.085 2.9E-06 56.8 3.1 23 613-635 23-45 (252)
456 4edh_A DTMP kinase, thymidylat 91.5 0.099 3.4E-06 54.7 3.5 27 610-636 4-30 (213)
457 2g6b_A RAS-related protein RAB 91.5 0.076 2.6E-06 53.3 2.5 23 614-636 12-34 (180)
458 2y8e_A RAB-protein 6, GH09086P 91.4 0.072 2.4E-06 53.4 2.3 22 614-635 16-37 (179)
459 3be4_A Adenylate kinase; malar 91.4 0.085 2.9E-06 55.4 2.9 25 611-635 4-28 (217)
460 3t1o_A Gliding protein MGLA; G 91.4 0.086 2.9E-06 53.8 2.9 24 614-637 16-39 (198)
461 2r8r_A Sensor protein; KDPD, P 91.4 0.056 1.9E-06 56.7 1.5 45 740-784 81-126 (228)
462 1ksh_A ARF-like protein 2; sma 91.4 0.089 3E-06 53.3 3.0 25 612-636 18-42 (186)
463 3con_A GTPase NRAS; structural 91.4 0.078 2.7E-06 53.9 2.5 22 614-635 23-44 (190)
464 3a1s_A Iron(II) transport prot 91.4 0.088 3E-06 57.0 3.0 23 614-636 7-29 (258)
465 1z0f_A RAB14, member RAS oncog 91.4 0.079 2.7E-06 53.0 2.5 23 614-636 17-39 (179)
466 2a9k_A RAS-related protein RAL 91.3 0.079 2.7E-06 53.5 2.5 22 614-635 20-41 (187)
467 2xb4_A Adenylate kinase; ATP-b 91.3 0.095 3.2E-06 55.3 3.2 21 614-634 2-22 (223)
468 3umf_A Adenylate kinase; rossm 91.3 0.086 2.9E-06 55.3 2.8 26 610-635 27-52 (217)
469 2efe_B Small GTP-binding prote 91.3 0.082 2.8E-06 53.1 2.6 22 614-635 14-35 (181)
470 2xtp_A GTPase IMAP family memb 91.2 0.085 2.9E-06 57.0 2.8 23 614-636 24-46 (260)
471 1nrj_B SR-beta, signal recogni 91.2 0.082 2.8E-06 55.2 2.5 23 614-636 14-36 (218)
472 2orv_A Thymidine kinase; TP4A 91.2 0.4 1.4E-05 50.3 7.6 52 742-799 89-149 (234)
473 2j9r_A Thymidine kinase; TK1, 91.2 0.39 1.3E-05 49.8 7.5 53 743-800 101-162 (214)
474 2il1_A RAB12; G-protein, GDP, 91.2 0.094 3.2E-06 53.6 2.9 23 614-636 28-50 (192)
475 3i8s_A Ferrous iron transport 91.2 0.088 3E-06 57.6 2.8 23 614-636 5-27 (274)
476 2f6r_A COA synthase, bifunctio 91.2 0.091 3.1E-06 57.7 2.9 21 613-633 76-96 (281)
477 2gf9_A RAS-related protein RAB 91.1 0.086 3E-06 53.7 2.5 23 614-636 24-46 (189)
478 2bme_A RAB4A, RAS-related prot 91.1 0.081 2.8E-06 53.5 2.3 22 614-635 12-33 (186)
479 2h57_A ADP-ribosylation factor 91.1 0.088 3E-06 53.6 2.5 23 614-636 23-45 (190)
480 2bov_A RAla, RAS-related prote 91.0 0.089 3E-06 54.2 2.5 22 614-635 16-37 (206)
481 1vg8_A RAS-related protein RAB 91.0 0.09 3.1E-06 54.3 2.6 23 614-636 10-32 (207)
482 2fg5_A RAB-22B, RAS-related pr 91.0 0.086 2.9E-06 53.9 2.4 23 614-636 25-47 (192)
483 2f7s_A C25KG, RAS-related prot 90.9 0.19 6.7E-06 52.2 5.2 23 614-636 27-49 (217)
484 1m7b_A RND3/RHOE small GTP-bin 90.9 0.086 2.9E-06 53.5 2.3 22 614-635 9-30 (184)
485 1zbd_A Rabphilin-3A; G protein 90.9 0.1 3.6E-06 53.7 3.0 23 614-636 10-32 (203)
486 4fcw_A Chaperone protein CLPB; 90.9 0.1 3.5E-06 58.0 3.1 26 611-636 46-71 (311)
487 2cjw_A GTP-binding protein GEM 90.9 0.093 3.2E-06 53.8 2.5 21 614-634 8-28 (192)
488 3tkl_A RAS-related protein RAB 90.9 0.093 3.2E-06 53.6 2.5 22 614-635 18-39 (196)
489 2gf0_A GTP-binding protein DI- 90.9 0.088 3E-06 53.9 2.4 22 614-635 10-31 (199)
490 1jbk_A CLPB protein; beta barr 90.9 0.12 4E-06 52.3 3.3 27 610-636 41-67 (195)
491 3bwd_D RAC-like GTP-binding pr 90.9 0.11 3.7E-06 52.2 3.0 23 614-636 10-32 (182)
492 3kkq_A RAS-related protein M-R 90.8 0.095 3.3E-06 52.9 2.5 22 614-635 20-41 (183)
493 2qu8_A Putative nucleolar GTP- 90.8 0.11 3.7E-06 54.9 3.0 23 614-636 31-53 (228)
494 3lv8_A DTMP kinase, thymidylat 90.8 0.11 3.8E-06 55.2 3.1 26 611-636 26-51 (236)
495 3exa_A TRNA delta(2)-isopenten 90.7 0.13 4.4E-06 56.7 3.5 26 612-637 3-28 (322)
496 2o52_A RAS-related protein RAB 90.7 0.11 3.6E-06 53.7 2.8 22 614-635 27-48 (200)
497 2w58_A DNAI, primosome compone 90.7 0.13 4.3E-06 53.2 3.3 23 613-635 55-77 (202)
498 1z06_A RAS-related protein RAB 90.7 0.1 3.5E-06 53.1 2.6 22 614-635 22-43 (189)
499 1mh1_A RAC1; GTP-binding, GTPa 90.7 0.1 3.4E-06 52.7 2.5 22 614-635 7-28 (186)
500 1e4v_A Adenylate kinase; trans 90.7 0.11 3.8E-06 54.3 2.9 21 614-634 2-22 (214)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.2e-61 Score=642.12 Aligned_cols=217 Identities=26% Similarity=0.369 Sum_probs=181.7
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++|+||+|.++. .++.++|+|+||+|+|||.+||+||||||||||+++|.|.++ |.+|+|.+||.+
T Consensus 1075 g~I~f~nVsf~Y~~----------~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~d 1142 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPE----------RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSE 1142 (1321)
T ss_dssp CCEEEEEEEECCTT----------SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEE
T ss_pred CeEEEEEEEEeCCC----------CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEE
Confidence 36999999996531 124579999999999999999999999999999999999987 568999999999
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~ 721 (1174)
+.. ..+|+.++||||++.+| +.|++|||.|+.. +.+.+. +.+.++++..+ |++..||.+|+.
T Consensus 1143 i~~i~~~~lR~~i~~V~Qdp~LF-~gTIreNI~~gld---~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~ 1214 (1321)
T 4f4c_A 1143 IKTLNPEHTRSQIAIVSQEPTLF-DCSIAENIIYGLD---PSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDR 1214 (1321)
T ss_dssp TTTBCHHHHHTTEEEECSSCCCC-SEEHHHHHSSSSC---TTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTT
T ss_pred hhhCCHHHHHhheEEECCCCEee-CccHHHHHhccCC---CCCCCH----HHHHHHHHHhCChHHHHcCcCCCCCEecCC
Confidence 865 35788899999999876 5699999987631 222333 33455555554 456689999987
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|. +||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +|+|+|+|+|+++. ...+|++++|.
T Consensus 1215 G~-~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld- 1289 (1321)
T 4f4c_A 1215 GT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVS- 1289 (1321)
T ss_dssp SC-SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEES-
T ss_pred Cc-ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEE-
Confidence 75 599999999999999999999999999999999999999999999865 48999999999863 56789999986
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|+++++|++++
T Consensus 1290 ~G~IvE~Gth~e 1301 (1321)
T 4f4c_A 1290 NGTIIEKGTHTQ 1301 (1321)
T ss_dssp SSSEEEEECHHH
T ss_pred CCEEEEECCHHH
Confidence 599999999854
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=8.4e-56 Score=587.11 Aligned_cols=217 Identities=25% Similarity=0.370 Sum_probs=175.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++||++.++. .++.++|+|+||+|++||++||+||||||||||+++|+|..+ |.+|+|.+||++
T Consensus 1029 g~i~~~~v~~~y~~----------~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPT----------RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSC----------GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSC
T ss_pred CcEEEEEEEEECCC----------CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEE
Confidence 35999999985421 123479999999999999999999999999999999999987 569999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHc-------CCCCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTI-------ELDGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~~~~~ 721 (1174)
+.. ...++.++||+|++.++ +.||+||+.++... ...+.++ +.+.++.. .+.+..|+.+|+.
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred cccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCC---CCCCHHH----HHHHHHHhCcHHHHHhCccccccccCCC
Confidence 754 23567899999998765 57999999875321 1122222 22222222 3455678889876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+. .|||||||||+|||||+++|+||+|||||||||+.+++.+.+.|+++. +|+|+|+++||++ .+ ..+|+++++.
T Consensus 1169 G~-~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~-~i-~~~dri~vl~- 1243 (1284)
T 3g5u_A 1169 GT-QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLS-TI-QNADLIVVIQ- 1243 (1284)
T ss_dssp SC-SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTT-GG-GSCSEEEEEE-
T ss_pred CC-ccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHH-HH-HcCCEEEEEE-
Confidence 54 699999999999999999999999999999999999999999998854 5899999999987 34 5689988886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 1244 ~G~i~~~g~~~~ 1255 (1284)
T 3g5u_A 1244 NGKVKEHGTHQQ 1255 (1284)
T ss_dssp TBEEEEEECHHH
T ss_pred CCEEEEECCHHH
Confidence 599999999754
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3e-46 Score=456.86 Aligned_cols=204 Identities=24% Similarity=0.262 Sum_probs=168.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+ ++ ..|+++||++++||+++|+||||||||||+|+|+|..+ |.+|+|.+
T Consensus 356 ~~l~~~~l~~~~-------------~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~---- 415 (607)
T 3bk7_A 356 TLVEYPRLVKDY-------------GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW---- 415 (607)
T ss_dssp EEEEECCEEEEC-------------SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC----
T ss_pred eEEEEeceEEEe-------------cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE----
Confidence 358888887643 12 36899999999999999999999999999999999887 45788865
Q ss_pred CCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 652 KVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 652 ~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
.+.++|++|+....+.+||.|++....... ....++++++++.+++.+..++.++ .||||||
T Consensus 416 ------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~ 477 (607)
T 3bk7_A 416 ------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGEL 477 (607)
T ss_dssp ------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHH
T ss_pred ------eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCChh-----hCCHHHH
Confidence 235899999987778899999887641110 0113557889999999888887764 6999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec-CcEEEEEc
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN-GGRIIYFG 809 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~v~~G 809 (1174)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||++ .+...+|+++++.+ .|+++..|
T Consensus 478 QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g 556 (607)
T 3bk7_A 478 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRAL 556 (607)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEEC
T ss_pred HHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecC
Confidence 999999999999999999999999999999999999999974 5999999999975 56667899888862 27888899
Q ss_pred CCCcc
Q 001048 810 PLGQH 814 (1174)
Q Consensus 810 ~~~~~ 814 (1174)
++++.
T Consensus 557 ~p~~~ 561 (607)
T 3bk7_A 557 PPMGM 561 (607)
T ss_dssp CCEEH
T ss_pred CHHHH
Confidence 98654
No 4
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=9.6e-46 Score=446.73 Aligned_cols=216 Identities=21% Similarity=0.225 Sum_probs=170.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|++..+. ...|+++|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~--------------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG--------------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET--------------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC--
T ss_pred eEEEcceEEEEC--------------CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCe--
Confidence 577788776431 135777899999999999999999999999999999887 56899987643
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
.++|++|+....+.+||+||+.+..... .. ...+.++++++.+++.+..++.++ .|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASKDA----LS--TSSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCSST----TC--TTSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHH
T ss_pred -------eeEeechhcccccCCCHHHHHHHhhhhc----cc--hhHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHH
Confidence 4699999876667899999998742111 11 112346788899999888777654 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec-CcEEEEEcC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN-GGRIIYFGP 810 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~v~~G~ 810 (1174)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||++ .+...+|+++++.. .|+....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCC
Confidence 99999999999999999999999999999999999999975 5999999999975 56677899988863 245666666
Q ss_pred CCccchhhhhhhhhC
Q 001048 811 LGQHSCKVIEYFECI 825 (1174)
Q Consensus 811 ~~~~~~~~~~~f~~~ 825 (1174)
+.........|+..+
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhc
Confidence 654333344555443
No 5
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-45 Score=447.72 Aligned_cols=203 Identities=25% Similarity=0.277 Sum_probs=166.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. + ..|+++||++++||++||+||||||||||+|+|+|..+ +.+|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC-----
T ss_pred EEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE-----
Confidence 578888876431 1 36889999999999999999999999999999999887 45788875
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
...++|++|+....+.+||.|++........ ...++++++++.+++.+..++.++ .|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREVN-----ELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHH
Confidence 2358999999877788999998865311110 012457788999999877777654 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec-CcEEEEEcC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN-GGRIIYFGP 810 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~v~~G~ 810 (1174)
||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||++ .+...+|+++++.+ .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 99999999999999999999999999999999999999974 5999999999975 56677899988863 278888999
Q ss_pred CCcc
Q 001048 811 LGQH 814 (1174)
Q Consensus 811 ~~~~ 814 (1174)
+++.
T Consensus 488 ~~~~ 491 (538)
T 1yqt_A 488 PMGM 491 (538)
T ss_dssp CEEH
T ss_pred HHHH
Confidence 8653
No 6
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-45 Score=446.07 Aligned_cols=201 Identities=19% Similarity=0.215 Sum_probs=160.9
Q ss_pred cccccceeEEeCC-----eEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCC
Q 001048 600 QLLSDITGTFRPG-----ILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNI 674 (1174)
Q Consensus 600 ~iL~~vs~~i~~G-----e~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~l 674 (1174)
.+++|+||++++| |+++|+||||||||||+++|+|..+ |.+|+. .. +..++|++|+....+..
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCcC------cc----CCcEEEecccccccCCc
Confidence 5788999999988 7899999999999999999999887 346641 11 23589999987766778
Q ss_pred CHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCC
Q 001048 675 TVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 754 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 754 (1174)
||+|++... .+. ... ..+.++++++.+++.+..++.++ .|||||||||+|||||+.+|++|||||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--ccc---cHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987542 111 111 12456788999999988887754 699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEec-CcEEEEEcCCCccchhhhhhhhhC
Q 001048 755 GLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKN-GGRIIYFGPLGQHSCKVIEYFECI 825 (1174)
Q Consensus 755 gLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~v~~G~~~~~~~~~~~~f~~~ 825 (1174)
|||+.++..+.++|+++++ .|+|||++|||++ .+...+|+++++.. .|+++..|++++.......+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhc
Confidence 9999999999999999864 5999999999975 56677899888864 289999999976543333444443
No 7
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3e-44 Score=407.85 Aligned_cols=220 Identities=21% Similarity=0.304 Sum_probs=190.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+... .+++++|+||||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 48999999876421 123579999999999999999999999999999999999987 5699999999987
Q ss_pred Ccc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 001048 653 VQH------TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726 (1174)
Q Consensus 653 ~~~------~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 726 (1174)
... ..++.+|||+|++.+++.+||+||+.++...+ ..++++.+++++++++.+||.+..++..+ +|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTT-----TS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hC
Confidence 532 13567999999999999999999999987654 34566677889999999999988877653 69
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||||+|||||+.+|++|||||||||||+.++..++++|++++++ |+|||++||+++ .+.+.+|++++|. +|++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~-~G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999765 999999999875 5667789888886 5999
Q ss_pred EEEcCCCc
Q 001048 806 IYFGPLGQ 813 (1174)
Q Consensus 806 v~~G~~~~ 813 (1174)
++.|++++
T Consensus 243 v~~g~~~e 250 (366)
T 3tui_C 243 IEQDTVSE 250 (366)
T ss_dssp EECCBHHH
T ss_pred EEEcCHHH
Confidence 99999754
No 8
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1e-43 Score=385.85 Aligned_cols=221 Identities=23% Similarity=0.347 Sum_probs=185.0
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+... ..++.+|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 6788998866421 113479999999999999999999999999999999999987 56999999999875
Q ss_pred ccc-------ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCC
Q 001048 654 QHT-------FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNG 725 (1174)
Q Consensus 654 ~~~-------~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~ 725 (1174)
... .++.+|||+|++.+++.+||+||+.++...+........+..+++.++++.+++.+. .+..+ .+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCCh-----hh
Confidence 321 134599999999999999999999998654422234456667788899999999764 36554 46
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ ++.+.+|+++++. +|+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~--~~~~~~d~i~~l~-~G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLK-DGE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH--HHHTTSSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH--HHHHhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999765 99999999986 4567788888886 599
Q ss_pred EEEEcCCCc
Q 001048 805 IIYFGPLGQ 813 (1174)
Q Consensus 805 ~v~~G~~~~ 813 (1174)
+++.+++++
T Consensus 223 i~~~~~~~~ 231 (235)
T 3tif_A 223 VEREEKLRG 231 (235)
T ss_dssp EEEEEECC-
T ss_pred EEEEcChhh
Confidence 999998753
No 9
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=6.9e-44 Score=407.72 Aligned_cols=215 Identities=27% Similarity=0.402 Sum_probs=191.0
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+||||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~ 68 (381)
T 3rlf_A 4 VQLQNVTKAW-------------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 68 (381)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECC
Confidence 7889998854 24679999999999999999999999999999999999987 56999999999875
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 654 QH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 654 ~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
.. ..++.+|||+|++.++|.+||+||+.|+...+ ..++++.+++++++++.++|.+..++... +|||||||
T Consensus 69 ~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~-----~LSGGqrQ 140 (381)
T 3rlf_A 69 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQ 140 (381)
T ss_dssp TCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGG-----GSCHHHHH
T ss_pred CCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----HCCHHHHH
Confidence 42 33467999999999999999999999987654 34566777889999999999988887754 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++..|++
T Consensus 141 RVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~-~G~i~~~g~~ 218 (381)
T 3rlf_A 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGKP 218 (381)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEEeCH
Confidence 999999999999999999999999999999999999999765 999999999975 6778889999887 5999999998
Q ss_pred Cc
Q 001048 812 GQ 813 (1174)
Q Consensus 812 ~~ 813 (1174)
++
T Consensus 219 ~~ 220 (381)
T 3rlf_A 219 LE 220 (381)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 10
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.2e-44 Score=406.16 Aligned_cols=216 Identities=24% Similarity=0.377 Sum_probs=187.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++.+|+||||+|++||+++|+||||||||||||+|+|..+ |.+|+|.++|+++
T Consensus 4 ~l~i~~ls~~y-------------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSF-------------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 37889998854 24679999999999999999999999999999999999987 5699999999986
Q ss_pred ----Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCC
Q 001048 653 ----VQ-HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 653 ----~~-~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 727 (1174)
.. ...++.+|||+|++.++|++||+||+.|+...+ ...+++.+++++++++.++|.+..|+..+ +||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPH-----ELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGG-----GSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChh-----hCC
Confidence 22 234567999999999999999999999975433 23445667789999999999998888754 699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
|||||||+|||||+.+|++|||||||||||+..+..+.+.|+++. +.|+|+|++|||++ ++...+|++++|. +|+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~-~G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMK-QGRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEE-TTEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEE-CCEEE
Confidence 999999999999999999999999999999999999999888875 45999999999975 6777889998887 59999
Q ss_pred EEcCCCc
Q 001048 807 YFGPLGQ 813 (1174)
Q Consensus 807 ~~G~~~~ 813 (1174)
..|++++
T Consensus 219 ~~g~~~e 225 (359)
T 3fvq_A 219 QTASPHE 225 (359)
T ss_dssp EEECHHH
T ss_pred EEeCHHH
Confidence 9999865
No 11
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=9.1e-44 Score=446.73 Aligned_cols=207 Identities=23% Similarity=0.292 Sum_probs=154.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ ...++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.
T Consensus 671 mL~v~nLs~~Y-----------~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~~-- 735 (986)
T 2iw3_A 671 IVKVTNMEFQY-----------PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHEN-- 735 (986)
T ss_dssp EEEEEEEEECC-----------TTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECTT--
T ss_pred eEEEEeeEEEe-----------CCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEcCc--
Confidence 48899998743 1123579999999999999999999999999999999999887 56999999862
Q ss_pred CcccccceEEEEccCCCC----CCCCCHHHHHHHHHhhcc------------C---------------------------
Q 001048 653 VQHTFARISGYCEQNDIH----SPNITVEESIVFSAWLRL------------S--------------------------- 689 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~----~~~lTv~e~l~~~~~~~~------------~--------------------------- 689 (1174)
..++|++|++.. ....|++|++.+...... .
T Consensus 736 ------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~ 809 (986)
T 2iw3_A 736 ------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRR 809 (986)
T ss_dssp ------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEE
T ss_pred ------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhh
Confidence 136888886421 124577777765311000 0
Q ss_pred -------------------------CCC--------C--------------------------HHHHHHHHHHHHHHcCC
Q 001048 690 -------------------------TQI--------D--------------------------SKTKAEFVNEVLQTIEL 710 (1174)
Q Consensus 690 -------------------------~~~--------~--------------------------~~~~~~~~~~~l~~l~l 710 (1174)
... . .....++++++++.+||
T Consensus 810 ~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL 889 (986)
T 2iw3_A 810 KFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGL 889 (986)
T ss_dssp EETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred hhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCC
Confidence 000 0 00013457889999999
Q ss_pred CC-c-ccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHH
Q 001048 711 DG-I-KDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSID 788 (1174)
Q Consensus 711 ~~-~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~ 788 (1174)
.+ . .+..+ ++|||||||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++ |.|||++||+++ .
T Consensus 890 ~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~ 960 (986)
T 2iw3_A 890 DPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-F 960 (986)
T ss_dssp CHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-H
T ss_pred CchhhcCCCc-----cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-H
Confidence 74 2 35544 369999999999999999999999999999999999999999888764 679999999864 3
Q ss_pred HHHHhcceeEEecCcEEEEEcC
Q 001048 789 IFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 789 ~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
+.+.+|+++++. +|+++..|+
T Consensus 961 v~~l~DrVivL~-~G~Iv~~G~ 981 (986)
T 2iw3_A 961 TKNLTEEVWAVK-DGRMTPSGH 981 (986)
T ss_dssp HTTTCCEEECCB-TTBCCC---
T ss_pred HHHhCCEEEEEE-CCEEEEeCC
Confidence 445678888776 589887775
No 12
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.5e-43 Score=442.02 Aligned_cols=195 Identities=25% Similarity=0.350 Sum_probs=144.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHh----------------------CCCCCCeEEEEEEECCeeCCccc
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS----------------------GRKTGGIIEGDIRIGGYPKVQHT 656 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~----------------------g~~~~~~~~G~i~~~g~~~~~~~ 656 (1174)
+.+|+||||+|++||++||+||||||||||+++|. |.. ...|.|.++|.++....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~---~~~~~i~~~~~~~~~~~ 411 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE---HLDKVIDIDQSPIGRTP 411 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG---GCSEEEECCSSCSCSST
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc---ccCceeEeccccCCCCC
Confidence 46899999999999999999999999999998764 111 12367888877653210
Q ss_pred cc--------------------------------------------ceEEEEccCCCCC---------------------
Q 001048 657 FA--------------------------------------------RISGYCEQNDIHS--------------------- 671 (1174)
Q Consensus 657 ~~--------------------------------------------~~~~~v~Q~~~~~--------------------- 671 (1174)
.. +..|++.|+..++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (670)
T 3ux8_A 412 RSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLE 491 (670)
T ss_dssp TCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHT
T ss_pred CcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhh
Confidence 00 0113333332222
Q ss_pred -----------CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHH
Q 001048 672 -----------PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQRKRLTIAVE 739 (1174)
Q Consensus 672 -----------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~a 739 (1174)
..+||+||+.+.... ...+++.+.++.+++.. ..+... .+|||||||||+||||
T Consensus 492 ~~~~~~~~~~~~~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iAra 557 (670)
T 3ux8_A 492 VTYKGKNIAEVLDMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAE 557 (670)
T ss_dssp CCBTTBCHHHHHTSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHH
T ss_pred eeecCCCHHHHhhCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccCCc-----hhCCHHHHHHHHHHHH
Confidence 247999999874311 12234567788888864 234443 4699999999999999
Q ss_pred hhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCC
Q 001048 740 LVANP---SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPL 811 (1174)
Q Consensus 740 l~~~p---~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~ 811 (1174)
|+.+| ++|||||||+|||+.++..++++|++++++|+|||++||+++ ....+|++++|. ++|++++.|++
T Consensus 558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~i~~l~~~~g~~~G~i~~~g~~ 635 (670)
T 3ux8_A 558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 635 (670)
T ss_dssp HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEECH
T ss_pred HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--HHHhCCEEEEecCCcCCCCCEEEEecCH
Confidence 99887 599999999999999999999999999888999999999864 457789888883 46999999997
Q ss_pred C
Q 001048 812 G 812 (1174)
Q Consensus 812 ~ 812 (1174)
+
T Consensus 636 ~ 636 (670)
T 3ux8_A 636 E 636 (670)
T ss_dssp H
T ss_pred H
Confidence 4
No 13
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=8.7e-44 Score=393.57 Aligned_cols=217 Identities=26% Similarity=0.367 Sum_probs=186.4
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. +++.+|+||||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 589999998541 12459999999999999999999999999999999999887 5699999999987
Q ss_pred Cc-----ccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 001048 653 VQ-----HTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726 (1174)
Q Consensus 653 ~~-----~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 726 (1174)
.. ...++.+|||+|++ ..++.+||+||+.++.... ..+.++..++++++++.++|.+..++.++ +|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTH-----CL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGG-----GS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----cC
Confidence 31 12456799999986 3445799999999986543 34566667889999999999988887754 69
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||+++ .+.+.+|++++|. +|++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~-~G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMK-EGRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEE-TTEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEE
Confidence 9999999999999999999999999999999999999999999997 56999999999987 5667789998886 5999
Q ss_pred EEEcCCCc
Q 001048 806 IYFGPLGQ 813 (1174)
Q Consensus 806 v~~G~~~~ 813 (1174)
++.|++++
T Consensus 223 ~~~g~~~~ 230 (275)
T 3gfo_A 223 ILQGNPKE 230 (275)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99999754
No 14
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.9e-43 Score=379.72 Aligned_cols=213 Identities=23% Similarity=0.316 Sum_probs=182.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 4 ~l~~~~l~~~y-------------~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVI-------------RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEE-------------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 37889998854 23579999999999999999999999999999999999987 5699999999987
Q ss_pred Cccc------cc-ceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 653 VQHT------FA-RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 653 ~~~~------~~-~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
.... .+ +.++||+|++.+++.+||+||+.++...+ .....+..++++++++.+++.+..++.++ +
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 140 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPY-----E 140 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----G
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----h
Confidence 4321 12 56999999999999999999999976543 22344556778999999999988877654 6
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ..+.+|+++++. +|++
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~v~~l~-~G~i 217 (224)
T 2pcj_A 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE--LAELTHRTLEMK-DGKV 217 (224)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--HHTTSSEEEEEE-TTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH--HHHhCCEEEEEE-CCEE
Confidence 9999999999999999999999999999999999999999999999877999999999864 347788888886 5999
Q ss_pred EEEcCC
Q 001048 806 IYFGPL 811 (1174)
Q Consensus 806 v~~G~~ 811 (1174)
++.|+.
T Consensus 218 ~~~g~~ 223 (224)
T 2pcj_A 218 VGEITR 223 (224)
T ss_dssp EEEEEC
T ss_pred EEEeee
Confidence 999874
No 15
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.2e-43 Score=388.20 Aligned_cols=215 Identities=27% Similarity=0.365 Sum_probs=184.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+||||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 24 ~l~i~~l~~~y-------------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSF-------------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEES
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 38999999864 23579999999999999999999999999999999999987 5699999999987
Q ss_pred C--c---ccccceEEEEccCCCCCCCCCHHHHHHHHH-hhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 001048 653 V--Q---HTFARISGYCEQNDIHSPNITVEESIVFSA-WLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726 (1174)
Q Consensus 653 ~--~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 726 (1174)
. . ...++.+|||+|++.+++.+||+||+.++. ... .....+..++++++++.++|.+..++.++ +|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPD-----SL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChh-----hC
Confidence 3 1 123456999999999999999999999964 322 23344556778999999999888777654 69
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++. +|+++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~-~G~i~ 238 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMD-GGYII 238 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE-TTEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 999999999999999999999999999999999999999999999877999999999874 4566788888886 59999
Q ss_pred EEcCCC
Q 001048 807 YFGPLG 812 (1174)
Q Consensus 807 ~~G~~~ 812 (1174)
+.|+++
T Consensus 239 ~~g~~~ 244 (263)
T 2olj_A 239 EEGKPE 244 (263)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999864
No 16
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-43 Score=388.43 Aligned_cols=215 Identities=22% Similarity=0.281 Sum_probs=184.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+||||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 6 ~l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEeeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 38899998854 23579999999999999999999999999999999999987 5699999999987
Q ss_pred Cc----------------ccccceEEEEccCCCCCCCCCHHHHHHHHH-hhccCCCCCHHHHHHHHHHHHHHcCCCCc-c
Q 001048 653 VQ----------------HTFARISGYCEQNDIHSPNITVEESIVFSA-WLRLSTQIDSKTKAEFVNEVLQTIELDGI-K 714 (1174)
Q Consensus 653 ~~----------------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~ 714 (1174)
.. ...++.+|||+|++.+++.+||+||+.++. ..+ .....+..++++++++.++|.+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhh
Confidence 41 123456999999999999999999999864 322 23344556778999999999887 7
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhc
Q 001048 715 DSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD 794 (1174)
Q Consensus 715 ~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d 794 (1174)
++.++ +|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|
T Consensus 148 ~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d 221 (262)
T 1b0u_A 148 GKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 221 (262)
T ss_dssp TSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCS
T ss_pred cCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCC
Confidence 77654 69999999999999999999999999999999999999999999999877999999999874 4566789
Q ss_pred ceeEEecCcEEEEEcCCC
Q 001048 795 DLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 795 ~~~~l~~~G~~v~~G~~~ 812 (1174)
+++++. +|++++.|+++
T Consensus 222 ~v~~l~-~G~i~~~g~~~ 238 (262)
T 1b0u_A 222 HVIFLH-QGKIEEEGDPE 238 (262)
T ss_dssp EEEEEE-TTEEEEEECHH
T ss_pred EEEEEE-CCEEEEeCCHH
Confidence 888886 59999999863
No 17
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5.6e-43 Score=398.25 Aligned_cols=218 Identities=23% Similarity=0.393 Sum_probs=189.5
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+ . +++++|+|+||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|++
T Consensus 13 ~~l~~~~l~~~y-----------~-g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 78 (355)
T 1z47_A 13 MTIEFVGVEKIY-----------P-GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKR 78 (355)
T ss_dssp EEEEEEEEEECC-----------T-TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred ceEEEEEEEEEE-----------c-CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEE
Confidence 358899998742 1 24579999999999999999999999999999999999987 569999999998
Q ss_pred CCcc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 652 KVQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 652 ~~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
+... ..++.+|||+|+..+++.+||+||+.|+...+ ..++++.+++++++++.++|.+..|+..+ +|||||
T Consensus 79 i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq 150 (355)
T 1z47_A 79 VTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPH-----ELSGGQ 150 (355)
T ss_dssp CTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHH
T ss_pred CCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHH
Confidence 7532 34567999999999999999999999987543 23455667789999999999988887754 699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 809 (1174)
||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++..|
T Consensus 151 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~-~G~i~~~g 228 (355)
T 1z47_A 151 QQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLH-EGNVEQFG 228 (355)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEE-TTEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEc
Confidence 99999999999999999999999999999999999999999765 999999999875 5677889988886 59999999
Q ss_pred CCCc
Q 001048 810 PLGQ 813 (1174)
Q Consensus 810 ~~~~ 813 (1174)
++++
T Consensus 229 ~~~~ 232 (355)
T 1z47_A 229 TPEE 232 (355)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 9754
No 18
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.6e-43 Score=383.78 Aligned_cols=215 Identities=26% Similarity=0.346 Sum_probs=184.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 15 ~l~i~~l~~~y-------------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEE-------------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 48899999854 23579999999999999999999999999999999999987 5699999999987
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH
Q 001048 653 VQ--HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~--~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 730 (1174)
.. ...++.+|||+|++.+++.+||+||+.++.... .....+..++++++++.++|.+..++.++ .|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHH
Confidence 43 224567999999999999999999999976443 22334445678899999999888777654 699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|+++++. +|++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~-~G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIH-NGTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEE-CCEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999864 4455688888886 599999998
Q ss_pred CC
Q 001048 811 LG 812 (1174)
Q Consensus 811 ~~ 812 (1174)
++
T Consensus 230 ~~ 231 (256)
T 1vpl_A 230 VE 231 (256)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 19
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=9.3e-43 Score=398.06 Aligned_cols=215 Identities=27% Similarity=0.376 Sum_probs=187.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++++|+|+||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKF-------------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEES-------------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 7888888743 24579999999999999999999999999999999999987 56999999999875
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 654 QH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 654 ~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
.. ..++.+|||+|+..+++++||+||+.|+...+ ...+++.+++++++++.++|.+..++..+ +|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPW-----QLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChh-----hCCHHHHH
Confidence 32 23467999999999999999999999986543 23455566789999999999988887754 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~-~G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIR-EGEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 999999999999999999999999999999999999999765 999999999875 5677889998886 5999999997
Q ss_pred Cc
Q 001048 812 GQ 813 (1174)
Q Consensus 812 ~~ 813 (1174)
++
T Consensus 219 ~~ 220 (362)
T 2it1_A 219 DE 220 (362)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 20
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=6.1e-43 Score=385.43 Aligned_cols=219 Identities=23% Similarity=0.297 Sum_probs=184.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+||||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 7 ~l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEeeeEEEE-------------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 48899999854 23579999999999999999999999999999999999987 5699999999987
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhh-ccCC---------CCCHHHHHHHHHHHHHHcCCCCcccccc
Q 001048 653 VQH----TFARISGYCEQNDIHSPNITVEESIVFSAWL-RLST---------QIDSKTKAEFVNEVLQTIELDGIKDSLV 718 (1174)
Q Consensus 653 ~~~----~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~-~~~~---------~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 718 (1174)
... ..++.+|||+|++.+++.+||+||+.++... .... .....+..++++++++.+++.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 432 1245699999999888999999999986432 1000 0122344567889999999988887775
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeE
Q 001048 719 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVL 798 (1174)
Q Consensus 719 ~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 798 (1174)
+ +|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++
T Consensus 152 ~-----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 4 69999999999999999999999999999999999999999999999877999999999986 56677899888
Q ss_pred EecCcEEEEEcCCCc
Q 001048 799 MKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 799 l~~~G~~v~~G~~~~ 813 (1174)
+. +|++++.|++++
T Consensus 226 l~-~G~i~~~g~~~~ 239 (257)
T 1g6h_A 226 MF-NGQIIAEGRGEE 239 (257)
T ss_dssp EE-TTEEEEEEESHH
T ss_pred EE-CCEEEEEeCHHH
Confidence 86 599999998743
No 21
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=7.6e-43 Score=398.37 Aligned_cols=215 Identities=25% Similarity=0.384 Sum_probs=186.0
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++++|+|+||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYF-------------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence 7888988754 23579999999999999999999999999999999999987 56999999999875
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 654 QH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 654 ~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
.. ..++.+|||+|+..+++++||+||+.|+...+ ..++.+.+++++++++.++|.+..++..+ +|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPT-----QLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHH
Confidence 42 23567999999999999999999999975432 22334445678999999999988887754 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~-~G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFN-QGKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999999999999999765 999999999875 5667889988886 5999999997
Q ss_pred Cc
Q 001048 812 GQ 813 (1174)
Q Consensus 812 ~~ 813 (1174)
++
T Consensus 219 ~~ 220 (359)
T 2yyz_A 219 DE 220 (359)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 22
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.7e-42 Score=398.40 Aligned_cols=215 Identities=24% Similarity=0.351 Sum_probs=187.6
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++++|+|+||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVF-------------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEeEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECc
Confidence 7888998754 23579999999999999999999999999999999999987 56999999998864
Q ss_pred c-------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCC
Q 001048 654 Q-------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGL 726 (1174)
Q Consensus 654 ~-------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 726 (1174)
. ...++.+|||+|+..+++++||+||+.|+...+ .....+.+++++++++.++|.+..++..+ +|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----EL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----GS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcc-----cC
Confidence 3 123467999999999999999999999987543 23455566789999999999988887754 69
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|++
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~-~G~i 218 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMN-RGVL 218 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEe-CCEE
Confidence 999999999999999999999999999999999999999999999765 999999999975 5677889988886 5999
Q ss_pred EEEcCCCc
Q 001048 806 IYFGPLGQ 813 (1174)
Q Consensus 806 v~~G~~~~ 813 (1174)
+..|++++
T Consensus 219 ~~~g~~~~ 226 (372)
T 1g29_1 219 QQVGSPDE 226 (372)
T ss_dssp EEEECHHH
T ss_pred EEeCCHHH
Confidence 99999754
No 23
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.1e-42 Score=397.71 Aligned_cols=215 Identities=26% Similarity=0.381 Sum_probs=186.9
Q ss_pred EEEeceEEEEeeCCccccccccccccc--ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQ--LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
++++|+++.+ ++++ +|+|+||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|++
T Consensus 4 l~i~~l~~~y-------------~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVF-------------KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEE-------------GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred EEEEeEEEEE-------------CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 7888988754 2346 9999999999999999999999999999999999987 569999999988
Q ss_pred CCc------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCC
Q 001048 652 KVQ------HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNG 725 (1174)
Q Consensus 652 ~~~------~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 725 (1174)
+.. ...++.+|||+|+..+++++||+||+.|+...+ ....++.+++++++++.++|.+..++..+ +
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~-----~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----E 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----G
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----h
Confidence 643 234567999999999999999999999975432 23455667789999999999988887754 6
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~-~G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLV-KGK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999764 999999999975 5677889988886 599
Q ss_pred EEEEcCCCc
Q 001048 805 IIYFGPLGQ 813 (1174)
Q Consensus 805 ~v~~G~~~~ 813 (1174)
++..|++++
T Consensus 219 i~~~g~~~~ 227 (353)
T 1oxx_K 219 LVQVGKPED 227 (353)
T ss_dssp EEEEECHHH
T ss_pred EEEEcCHHH
Confidence 999999754
No 24
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.1e-42 Score=384.00 Aligned_cols=214 Identities=22% Similarity=0.330 Sum_probs=184.3
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~-------------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHV-------------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEET
T ss_pred eEEEEeEEEEe-------------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 58899999854 24679999999999999999999999999999999999887 4589999999987
Q ss_pred Ccc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 653 VQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
... ..++.++|++|++.+++.+||+||+.++.... ...+.+++++++++.+++.+..++.++ +||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYR-----VLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 542 24566899999998888999999999875432 122345678899999999988887654 69999
Q ss_pred HHHHHHHHHHhhc------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 730 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 730 qrqRv~ia~al~~------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
|||||+|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ .+...+|++++|. +
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~-~ 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLA-Q 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEE-T
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEE-C
Confidence 9999999999999 99999999999999999999999999999765 579999999875 5666789888886 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|++++
T Consensus 224 G~i~~~g~~~~ 234 (266)
T 4g1u_C 224 GKLVACGTPEE 234 (266)
T ss_dssp TEEEEEECHHH
T ss_pred CEEEEEcCHHH
Confidence 99999999865
No 25
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-42 Score=377.95 Aligned_cols=214 Identities=20% Similarity=0.311 Sum_probs=180.7
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 6 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEE-------------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 48899998854 23579999999999999999999999999999999999987 5699999999987
Q ss_pred Cccc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-CCCcccccccCCCCCCCC
Q 001048 653 VQHT----FARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-LDGIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 653 ~~~~----~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~LS 727 (1174)
.... .++.+||++|++.+++.+||+||+.++.... ....+..+.++++++.++ +.+..++.+ .+||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCC
Confidence 5321 2345999999999999999999999863211 122334566788999994 877766654 3699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|++++
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~-~G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLE-TGQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEE-TTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999864 5667889988886 599999
Q ss_pred EcCCC
Q 001048 808 FGPLG 812 (1174)
Q Consensus 808 ~G~~~ 812 (1174)
.|+++
T Consensus 220 ~g~~~ 224 (240)
T 1ji0_A 220 EGKAS 224 (240)
T ss_dssp EEEHH
T ss_pred EcCHH
Confidence 99864
No 26
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.5e-42 Score=397.88 Aligned_cols=215 Identities=23% Similarity=0.360 Sum_probs=181.2
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++.+|+|+||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|+++.
T Consensus 12 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence 8899998854 23579999999999999999999999999999999999987 56999999999875
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 654 QH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 654 ~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
.. ..++.+|||+|+..+++++||+||+.|+...+ ...+++.+++++++++.++|.+..++..+ +|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPA-----QLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHH
Confidence 32 23567999999999999999999999875332 23455566789999999999988887754 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++..|++
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~-~G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMN-RGQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999999999999999765 999999999875 5667889988886 5999999997
Q ss_pred Cc
Q 001048 812 GQ 813 (1174)
Q Consensus 812 ~~ 813 (1174)
++
T Consensus 227 ~~ 228 (372)
T 1v43_A 227 TE 228 (372)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 27
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=4.1e-42 Score=391.22 Aligned_cols=211 Identities=21% Similarity=0.328 Sum_probs=182.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ +++ +|+|+||++++||+++|+||||||||||||+|+|..+ |.+|+|.++|+++.
T Consensus 2 l~~~~l~~~y-------------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKW-------------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEEC-------------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 5678887743 235 9999999999999999999999999999999999987 56999999999875
Q ss_pred c-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 654 Q-HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 654 ~-~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
. ...++.+|||+|+..+++++||+||+.|+...+.. .+. ++++++++.++|.+..|+..+ +|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~~-----~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNPL-----TLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCGG-----GSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCChh-----hCCHHHHH
Confidence 3 22356799999999999999999999998754321 111 678899999999998888754 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++..|++
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~-~G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVM-DGKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEES-SSCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 999999999999999999999999999999999999999764 999999999874 5677889888886 5999999997
Q ss_pred Cc
Q 001048 812 GQ 813 (1174)
Q Consensus 812 ~~ 813 (1174)
++
T Consensus 213 ~~ 214 (348)
T 3d31_A 213 EE 214 (348)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.9e-42 Score=384.10 Aligned_cols=213 Identities=27% Similarity=0.368 Sum_probs=175.0
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++||++.+. +++.+|+||||+|++||++||+||||||||||+|+|+|..+ |.+|+|.++|++
T Consensus 52 ~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~ 117 (306)
T 3nh6_A 52 GRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQD 117 (306)
T ss_dssp CCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEE
Confidence 3599999998642 23579999999999999999999999999999999999987 569999999998
Q ss_pred CCcc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------CcccccccCC
Q 001048 652 KVQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-------GIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 721 (1174)
+... .+++.+|||+|++.++ ..||+|||.++... ... +.++++++.+++. +..++.++..
T Consensus 118 i~~~~~~~~r~~i~~v~Q~~~lf-~~Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 187 (306)
T 3nh6_A 118 ISQVTQASLRSHIGVVPQDTVLF-NDTIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGER 187 (306)
T ss_dssp TTSBCHHHHHHTEEEECSSCCCC-SEEHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTT
T ss_pred cccCCHHHHhcceEEEecCCccC-cccHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcCC
Confidence 7542 3567799999998877 56999999986321 122 2234444444443 3456777765
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+ .+|||||||||+|||||+.+|+||||||||||||+.++..|++.|+++.+ ++|+|++||+++ ....+|++++|.
T Consensus 188 g-~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~aD~i~vl~- 262 (306)
T 3nh6_A 188 G-LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS--TVVNADQILVIK- 262 (306)
T ss_dssp S-BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH--HHHTCSEEEEEE-
T ss_pred c-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH--HHHcCCEEEEEE-
Confidence 5 46999999999999999999999999999999999999999999999864 799999999874 445689998887
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 263 ~G~iv~~G~~~e 274 (306)
T 3nh6_A 263 DGCIVERGRHEA 274 (306)
T ss_dssp TTEEEEEECHHH
T ss_pred CCEEEEECCHHH
Confidence 599999999753
No 29
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=8.8e-42 Score=370.93 Aligned_cols=209 Identities=20% Similarity=0.314 Sum_probs=177.5
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ ++ +|+|+||++++ |+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 2 l~~~~l~~~y-------------~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRL-------------GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEE-------------TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEe-------------CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5678888754 12 49999999999 9999999999999999999999987 56999999999874
Q ss_pred c-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 654 Q-HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 654 ~-~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
. ...++.+|||+|++.+++.+||+||+.++...+ .....+++++++++.+++.+..++.++ +|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHH
Confidence 3 234567899999999999999999998864221 112235678899999999888777654 69999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++...+|+++++. +|++++.|++
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~-~G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVML-NGRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 999999999999999999999999999999999999999754 999999999864 5667789888886 5999999986
Q ss_pred C
Q 001048 812 G 812 (1174)
Q Consensus 812 ~ 812 (1174)
+
T Consensus 212 ~ 212 (240)
T 2onk_A 212 K 212 (240)
T ss_dssp H
T ss_pred H
Confidence 3
No 30
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.2e-41 Score=421.14 Aligned_cols=200 Identities=27% Similarity=0.430 Sum_probs=148.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHH---------HHHhCCCC-C---CeEEE------EEEECCeeCCccc---
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLM---------DVLSGRKT-G---GIIEG------DIRIGGYPKVQHT--- 656 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl---------~~l~g~~~-~---~~~~G------~i~~~g~~~~~~~--- 656 (1174)
...|+|||++|++||+++|+||||||||||+ +.+.|... . .+..| .+.+++.++....
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3579999999999999999999999999997 34444221 0 12233 3555554432100
Q ss_pred -----------------------------------------ccceEEEEccCCCCCC-----------------------
Q 001048 657 -----------------------------------------FARISGYCEQNDIHSP----------------------- 672 (1174)
Q Consensus 657 -----------------------------------------~~~~~~~v~Q~~~~~~----------------------- 672 (1174)
..+..|++.|+..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0012367777665554
Q ss_pred ---------CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcC
Q 001048 673 ---------NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVAN 743 (1174)
Q Consensus 673 ---------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~ 743 (1174)
.+||.|++.|... ....+++.++++.+||... ..+.+ ..+|||||||||+|||||+++
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~---------~~~~~~~~~~L~~vGL~~~---~lgq~-~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKN---------IPSIKRTLQVLHDVGLGYV---KLGQP-ATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTT---------CHHHHHHHHHHHHTTGGGS---BTTCC-STTCCHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHhhCCHHHHHHHHhc---------chhHHHHHHHHHHcCCchh---hccCC-ccCCCHHHHHHHHHHHHHhhC
Confidence 3688888877431 1223456788999998642 22222 246999999999999999987
Q ss_pred C---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCCCc
Q 001048 744 P---SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPLGQ 813 (1174)
Q Consensus 744 p---~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~~ 813 (1174)
| +||||||||+|||+.++..+++.|++++++|.|||+|+|++ ++...+|++++|. ++|++++.|++++
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpee 899 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPEE 899 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH--HHHHhCCEEEEecCCCCCCCCEEEEEcCHHH
Confidence 5 79999999999999999999999999988899999999986 4566789998883 5799999999854
No 31
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2e-41 Score=371.78 Aligned_cols=217 Identities=23% Similarity=0.285 Sum_probs=174.5
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCC--CCCCeEEEEEEECCee
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR--KTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~--~~~~~~~G~i~~~g~~ 651 (1174)
++++|+++.+ +++++|+|+||++++||+++|+||||||||||+|+|+|. .+ |.+|+|.++|++
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~ 68 (250)
T 2d2e_A 4 LEIRDLWASI-------------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGEN 68 (250)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEE
T ss_pred EEEEeEEEEE-------------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEE
Confidence 7889998854 235799999999999999999999999999999999997 44 679999999998
Q ss_pred CCccc---c-cceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-CCcccccccCCCCCC-
Q 001048 652 KVQHT---F-ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-DGIKDSLVGLPGVNG- 725 (1174)
Q Consensus 652 ~~~~~---~-~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-~~~~~~~~~~~~~~~- 725 (1174)
+.... . ++.++|++|++.+++.+||+||+.++............+..++++++++.+++ .+..++.++ .
T Consensus 69 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~ 143 (250)
T 2d2e_A 69 ILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN-----EG 143 (250)
T ss_dssp CTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT-----CC
T ss_pred CCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cC
Confidence 74321 1 33489999999999999999999987532111112233445678899999999 477777653 5
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHH-hcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEA-FDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~~G~ 804 (1174)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|+++++. +|+
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~-~G~ 221 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMM-DGR 221 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999767999999999975 34444 48888886 599
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 222 i~~~g~~~ 229 (250)
T 2d2e_A 222 VVATGGPE 229 (250)
T ss_dssp EEEEESHH
T ss_pred EEEEeCHH
Confidence 99999864
No 32
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-41 Score=375.30 Aligned_cols=215 Identities=22% Similarity=0.324 Sum_probs=180.0
Q ss_pred EEEeceEEEEeeCCccccccccccc---ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTR---LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
++++|+++.+.. ++ +++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+
T Consensus 3 l~~~~l~~~y~~-----------~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~ 69 (266)
T 2yz2_A 3 IEVVNVSHIFHR-----------GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGE 69 (266)
T ss_dssp EEEEEEEEEEST-----------TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred EEEEEEEEEecC-----------CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCE
Confidence 678899886520 12 479999999999999999999999999999999999987 56999999999
Q ss_pred eCCcccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC--CcccccccCCCCCCCC
Q 001048 651 PKVQHTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD--GIKDSLVGLPGVNGLS 727 (1174)
Q Consensus 651 ~~~~~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~~~~~~~~LS 727 (1174)
++.....++.+|||+|++ ..++.+||+||+.++.... ....+..++++++++.++|. +..++.++ +||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----~LS 140 (266)
T 2yz2_A 70 RKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVPF-----FLS 140 (266)
T ss_dssp ECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCGG-----GSC
T ss_pred ECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCChh-----hCC
Confidence 875333456799999985 4567899999999864321 11122245678899999998 77777653 699
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|+++++. +|++++
T Consensus 141 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~-~G~i~~ 218 (266)
T 2yz2_A 141 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLE-KGKKVF 218 (266)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEE-TTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 4556788888886 599999
Q ss_pred EcCCC
Q 001048 808 FGPLG 812 (1174)
Q Consensus 808 ~G~~~ 812 (1174)
.|+++
T Consensus 219 ~g~~~ 223 (266)
T 2yz2_A 219 DGTRM 223 (266)
T ss_dssp EEEHH
T ss_pred eCCHH
Confidence 99863
No 33
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=6.2e-41 Score=416.90 Aligned_cols=197 Identities=27% Similarity=0.411 Sum_probs=149.2
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHh-C----C-----CCCC---eEEE------EEEECCeeCCccc----
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS-G----R-----KTGG---IIEG------DIRIGGYPKVQHT---- 656 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~-g----~-----~~~~---~~~G------~i~~~g~~~~~~~---- 656 (1174)
..|+|||++|++||+++|+|+||||||||+++|. | . ..++ ...| .|.++|.++....
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccc
Confidence 4799999999999999999999999999999864 2 1 1111 2334 5888887753110
Q ss_pred ------------------ccceEEEEccCCCCC----------------------C------------------------
Q 001048 657 ------------------FARISGYCEQNDIHS----------------------P------------------------ 672 (1174)
Q Consensus 657 ------------------~~~~~~~v~Q~~~~~----------------------~------------------------ 672 (1174)
..+.+||++|...+. +
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhcc
Confidence 012347777743221 1
Q ss_pred --------CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHHhhcC
Q 001048 673 --------NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQRKRLTIAVELVAN 743 (1174)
Q Consensus 673 --------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~ 743 (1174)
.+||.|++.|... . . ..+++.++++.++|.. ..+..+ ..|||||||||+||++|+.+
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~ 863 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRR 863 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHhhhcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcC
Confidence 3578888776321 1 1 1234567899999976 455554 36999999999999999987
Q ss_pred C---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCCC
Q 001048 744 P---SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPLG 812 (1174)
Q Consensus 744 p---~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~ 812 (1174)
| ++|||||||+|||+.++..+++.|++++++|.|||+++|+++ ....+|++++|. ++|++++.|+++
T Consensus 864 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~~ 938 (972)
T 2r6f_A 864 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTPE 938 (972)
T ss_dssp CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCHH
Confidence 5 999999999999999999999999999888999999999864 456789988884 479999999864
No 34
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1e-41 Score=378.53 Aligned_cols=220 Identities=21% Similarity=0.357 Sum_probs=179.9
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+ +++++|+||||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++
T Consensus 20 ~~l~~~~l~~~y-------------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~ 84 (279)
T 2ihy_A 20 MLIQLDQIGRMK-------------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKM 84 (279)
T ss_dssp EEEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBC
T ss_pred ceEEEEeEEEEE-------------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEE
Confidence 358999999854 23579999999999999999999999999999999999987 569999999987
Q ss_pred CC--c---ccccceEEEEccCCCCC--CCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCC
Q 001048 652 KV--Q---HTFARISGYCEQNDIHS--PNITVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 652 ~~--~---~~~~~~~~~v~Q~~~~~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
+. . ...++.+|||+|++.+. +.+||+||+.++...... ......+..++++++++.+++.+..++.++
T Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---- 160 (279)
T 2ihy_A 85 PGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG---- 160 (279)
T ss_dssp CC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG----
T ss_pred cccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh----
Confidence 64 2 22456799999986543 356999999875311000 011123345678899999999888777654
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE--EEEecCCCHHHHHHhcceeEEec
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTV--VCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv--i~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++||+++ ++.+.+|+++++.
T Consensus 161 -~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~- 237 (279)
T 2ihy_A 161 -YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLK- 237 (279)
T ss_dssp -GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEE-
T ss_pred -hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEE-
Confidence 699999999999999999999999999999999999999999999997669999 99999975 4557789888886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 238 ~G~i~~~g~~~~ 249 (279)
T 2ihy_A 238 DGQSIQQGAVED 249 (279)
T ss_dssp TTEEEEEEEHHH
T ss_pred CCEEEEECCHHH
Confidence 599999998754
No 35
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1e-40 Score=369.12 Aligned_cols=221 Identities=22% Similarity=0.292 Sum_probs=180.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +++++|+|+||+|++||+++|+||||||||||+|+|+|.....|.+|+|.++|+++
T Consensus 20 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSV-------------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 58999999854 23579999999999999999999999999999999999842226799999999986
Q ss_pred Cccc---c-cceEEEEccCCCCCCCCCHHHHHHHHHh-hc---cCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCC
Q 001048 653 VQHT---F-ARISGYCEQNDIHSPNITVEESIVFSAW-LR---LSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGV 723 (1174)
Q Consensus 653 ~~~~---~-~~~~~~v~Q~~~~~~~lTv~e~l~~~~~-~~---~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 723 (1174)
.... . ++.++||+|++.+++.+||.||+.+... .+ .....+..+..++++++++.+++. +..++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 4321 1 2348999999999999999999987542 11 111223444456788999999996 46666543
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHH-hcceeEEecC
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEA-FDDLVLMKNG 802 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~~ 802 (1174)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+... +|+++++. +
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~-~ 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLY-Q 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEE-T
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEE-C
Confidence 149999999999999999999999999999999999999999999998767999999999975 33343 68888886 5
Q ss_pred cEEEEEcCCC
Q 001048 803 GRIIYFGPLG 812 (1174)
Q Consensus 803 G~~v~~G~~~ 812 (1174)
|++++.|+++
T Consensus 241 G~i~~~g~~~ 250 (267)
T 2zu0_C 241 GRIVKSGDFT 250 (267)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEEcCHH
Confidence 9999999975
No 36
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=8.7e-41 Score=364.85 Aligned_cols=206 Identities=22% Similarity=0.368 Sum_probs=176.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++ . ++|+|+||++++||+++|+||||||||||+|+|+|..+ +. |+|.++|+++
T Consensus 4 ~l~~~~l~~----------------~-~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~ 63 (249)
T 2qi9_C 4 VMQLQDVAE----------------S-TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPL 63 (249)
T ss_dssp EEEEEEEEE----------------T-TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEG
T ss_pred EEEEEceEE----------------E-EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEEC
Confidence 377888876 1 68999999999999999999999999999999999987 57 9999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 729 (1174)
.. ...++.++|++|++.+++.+||+||+.++.. . ... .++++++++.+++.+..++.+ .+||||
T Consensus 64 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 130 (249)
T 2qi9_C 64 EAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRST-----NQLSGG 130 (249)
T ss_dssp GGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHH
T ss_pred CcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCCh-----hhCCHH
Confidence 43 2345679999999988889999999987521 1 111 456788999999988877765 369999
Q ss_pred HHHHHHHHHHhhcCCc-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 730 QRKRLTIAVELVANPS-------IIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~-------illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
|||||+|||||+.+|+ +|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|+++++. +
T Consensus 131 q~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~-~ 208 (249)
T 2qi9_C 131 EWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLK-G 208 (249)
T ss_dssp HHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE-T
T ss_pred HHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 9999999999999999 99999999999999999999999999877999999999864 4557788888886 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|++++
T Consensus 209 G~i~~~g~~~~ 219 (249)
T 2qi9_C 209 GKMLASGRREE 219 (249)
T ss_dssp TEEEEEEEHHH
T ss_pred CEEEEeCCHHH
Confidence 99999998754
No 37
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.6e-40 Score=362.67 Aligned_cols=209 Identities=23% Similarity=0.366 Sum_probs=174.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+. .++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.
T Consensus 4 ~l~i~~l~~~y~------------~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~------ 63 (253)
T 2nq2_C 4 ALSVENLGFYYQ------------AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE------ 63 (253)
T ss_dssp EEEEEEEEEEET------------TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE------
T ss_pred eEEEeeEEEEeC------------CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE------
Confidence 378899988541 03579999999999999999999999999999999999987 5699998
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLST-QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 731 (1174)
.++.++||+|++.+++.+||+||+.++....... .....+..++++++++.+++.+..++.++ +||||||
T Consensus 64 ----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~ 134 (253)
T 2nq2_C 64 ----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT-----SLSGGQR 134 (253)
T ss_dssp ----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHH
T ss_pred ----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh-----hCCHHHH
Confidence 2356899999998888999999999864321110 01123345678899999999888777654 6999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++++. +|+ ++.|+
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~-~G~-~~~g~ 211 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLN-KQN-FKFGE 211 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEE-TTE-EEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEe-CCe-EecCC
Confidence 9999999999999999999999999999999999999999876 999999999874 4557889988887 589 99998
Q ss_pred CCc
Q 001048 811 LGQ 813 (1174)
Q Consensus 811 ~~~ 813 (1174)
+++
T Consensus 212 ~~~ 214 (253)
T 2nq2_C 212 TRN 214 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 38
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=4.9e-41 Score=357.86 Aligned_cols=201 Identities=20% Similarity=0.302 Sum_probs=167.8
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ ++ ++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++
T Consensus 10 ~l~~~~ls~~y-------------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGY-------------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEES-------------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEe-------------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEh
Confidence 58899998742 24 79999999999999999999999999999999999987 5699999999987
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHH
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRK 732 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 732 (1174)
. ..++.++||+|++.+++.+||+||+.++...+.. . .+ .++++++++.+++.+. +..+ .+|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K---VN-KNEIMDALESVEVLDL-KKKL-----GELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHH
Confidence 5 3567799999999999999999999987644211 1 11 3567889999999876 6554 469999999
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 001048 733 RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 733 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 805 (1174)
||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|++ ++. +|+|
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v-~~~-~~~~ 210 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENL-HKY-STKI 210 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEG-GGG-BC--
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEE-EEe-CCcc
Confidence 999999999999999999999999999999999999999867899999999986 444444554 444 3665
No 39
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=5.9e-40 Score=409.83 Aligned_cols=198 Identities=26% Similarity=0.394 Sum_probs=145.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHh-C----CC-----CCCe---EEE------EEEECCeeCCccc----
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS-G----RK-----TGGI---IEG------DIRIGGYPKVQHT---- 656 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~-g----~~-----~~~~---~~G------~i~~~g~~~~~~~---- 656 (1174)
.+|+|||++|++||+++|+|+||||||||+++|. | .. .++. ..| .|.+++.++....
T Consensus 656 ~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~p 735 (993)
T 2ygr_A 656 HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNP 735 (993)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCH
T ss_pred ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccch
Confidence 4799999999999999999999999999999863 2 11 1111 123 3566666542100
Q ss_pred ------------------ccceEEEEccCCCCC----------------------C------------------------
Q 001048 657 ------------------FARISGYCEQNDIHS----------------------P------------------------ 672 (1174)
Q Consensus 657 ------------------~~~~~~~v~Q~~~~~----------------------~------------------------ 672 (1174)
..+..||++|...+. +
T Consensus 736 aty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 815 (993)
T 2ygr_A 736 ATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYK 815 (993)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhcc
Confidence 012346766643221 1
Q ss_pred --------CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHHhhcC
Q 001048 673 --------NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQRKRLTIAVELVAN 743 (1174)
Q Consensus 673 --------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~ 743 (1174)
.+||.|++.|... . . ..+++.++++.++|.. ..+..+ ..|||||||||+||++|+.+
T Consensus 816 g~si~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~lgL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~ 881 (993)
T 2ygr_A 816 GKTVSEVLDMSIEEAAEFFEP------I-A--GVHRYLRTLVDVGLGYVRLGQPA-----PTLSGGEAQRVKLASELQKR 881 (993)
T ss_dssp TBCHHHHHSSBHHHHHHHSTT------C-H--HHHHHHHHHHHTTGGGSBTTCCG-----GGSCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHHhhccHHHHHHHhhc------c-h--HHHHHHHHHHHcCCCcccccCcc-----ccCCHHHHHHHHHHHHHHhC
Confidence 3577777765321 1 1 1234567899999876 344443 46999999999999999986
Q ss_pred C---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCCCc
Q 001048 744 P---SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPLGQ 813 (1174)
Q Consensus 744 p---~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~~ 813 (1174)
| ++|||||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|++++|. ++|++++.|++++
T Consensus 882 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gg~~~G~Iv~~G~~~e 957 (993)
T 2ygr_A 882 STGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD--VIKTSDWIIDLGPEGGAGGGTVVAQGTPED 957 (993)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSTTSCSEEEEEECHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCcCCCCCEEEEecCHHH
Confidence 5 999999999999999999999999999888999999999864 457789998884 4799999998743
No 40
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=1.3e-39 Score=406.52 Aligned_cols=197 Identities=25% Similarity=0.384 Sum_probs=144.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHH-HhCCC-------CC----------------CeEEE-------EEEEC
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDV-LSGRK-------TG----------------GIIEG-------DIRIG 648 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~-l~g~~-------~~----------------~~~~G-------~i~~~ 648 (1174)
.+|+|||++|++||++||+|+||||||||+++ |+|.. .+ .+.+| .|.++
T Consensus 511 ~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vd 590 (842)
T 2vf7_A 511 NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVD 590 (842)
T ss_dssp TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEEC
T ss_pred cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEEC
Confidence 36999999999999999999999999999996 76421 11 13577 78999
Q ss_pred CeeCCcccc-------------c---------ceEEEEcc----------------------CCCCC-------------
Q 001048 649 GYPKVQHTF-------------A---------RISGYCEQ----------------------NDIHS------------- 671 (1174)
Q Consensus 649 g~~~~~~~~-------------~---------~~~~~v~Q----------------------~~~~~------------- 671 (1174)
|.++..... + +..||.++ +-.++
T Consensus 591 q~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~ 670 (842)
T 2vf7_A 591 QKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGT 670 (842)
T ss_dssp SSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTC
T ss_pred CeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCc
Confidence 877532110 0 11122211 11111
Q ss_pred -----------CC--------CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHH
Q 001048 672 -----------PN--------ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 672 -----------~~--------lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqr 731 (1174)
.. +|+.|++.|.. . ....+++.++++.++|... .+..+ ..||||||
T Consensus 671 r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~---~~~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGek 736 (842)
T 2vf7_A 671 RYNAETLEVEYRGKNIADVLALTVDEAHDFFA------D---ESAIFRALDTLREVGLGYLRLGQPA-----TELSGGEA 736 (842)
T ss_dssp CBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------T---SHHHHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHH
T ss_pred ccchhhHhhhhcCCCHHHHHhccHHHHHHHhh------c---chHHHHHHHHHHHcCCCcccccCCc-----ccCCHHHH
Confidence 12 34555544321 1 1123467889999999763 34443 46999999
Q ss_pred HHHHHHHHhhcC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCc
Q 001048 732 KRLTIAVELVAN---PSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGG 803 (1174)
Q Consensus 732 qRv~ia~al~~~---p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G 803 (1174)
|||+||++|+++ |+||||||||+|||+.+...+.+.|++++++|.|||+++|+++ ..+.+|++++|. ++|
T Consensus 737 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~--~i~~aDrii~L~p~~g~~~G 814 (842)
T 2vf7_A 737 QRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ--VVAASDWVLDIGPGAGEDGG 814 (842)
T ss_dssp HHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCC
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCCCCCCC
Confidence 999999999996 6999999999999999999999999999888999999999864 447789888884 479
Q ss_pred EEEEEcCCC
Q 001048 804 RIIYFGPLG 812 (1174)
Q Consensus 804 ~~v~~G~~~ 812 (1174)
++++.|+++
T Consensus 815 ~Iv~~g~~~ 823 (842)
T 2vf7_A 815 RLVAQGTPA 823 (842)
T ss_dssp SEEEEECHH
T ss_pred EEEEEcCHH
Confidence 999999874
No 41
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.3e-40 Score=363.99 Aligned_cols=213 Identities=26% Similarity=0.392 Sum_probs=173.0
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+. .+++.+|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++
T Consensus 6 ~~~~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CceeEEEEEEEeC-----------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 4689999998531 123579999999999999999999999999999999999987 569999999998
Q ss_pred CCcc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccc-------cccCC
Q 001048 652 KVQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDS-------LVGLP 721 (1174)
Q Consensus 652 ~~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~ 721 (1174)
+... .+++.++||+|++.+++ .||+||+.++.. ... .++++++++.+++.+..++ .++.+
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~ 142 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTT
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCC
Confidence 7532 24567999999988875 699999987521 112 2345667777777654332 23332
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
...|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++ . .+.+|++++|.
T Consensus 143 -~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~-~~~~d~v~~l~- 217 (247)
T 2ff7_A 143 -GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-T-VKNADRIIVME- 217 (247)
T ss_dssp -TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-G-GTTSSEEEEEE-
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-H-HHhCCEEEEEE-
Confidence 35799999999999999999999999999999999999999999999995 5999999999975 3 35688888886
Q ss_pred CcEEEEEcCCC
Q 001048 802 GGRIIYFGPLG 812 (1174)
Q Consensus 802 ~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 218 ~G~i~~~g~~~ 228 (247)
T 2ff7_A 218 KGKIVEQGKHK 228 (247)
T ss_dssp TTEEEEEECHH
T ss_pred CCEEEEECCHH
Confidence 59999999863
No 42
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=7.5e-41 Score=370.78 Aligned_cols=214 Identities=25% Similarity=0.321 Sum_probs=172.1
Q ss_pred EEEEeceEEEEeeCCccccccccc-ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQ-TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
.++++||++.+. . +++++|+||||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|++
T Consensus 16 ~l~~~~l~~~y~-----------~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~ 82 (271)
T 2ixe_A 16 LVKFQDVSFAYP-----------NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEP 82 (271)
T ss_dssp CEEEEEEEECCT-----------TCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred eEEEEEEEEEeC-----------CCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEE
Confidence 489999998431 1 12579999999999999999999999999999999999987 569999999998
Q ss_pred CCcc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHH-----HHHHHHHHHHHc--CCCCcccccccCC
Q 001048 652 KVQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKT-----KAEFVNEVLQTI--ELDGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~l--~l~~~~~~~~~~~ 721 (1174)
+... .+++.++||+|++.+++ .||+||+.++.... . ...+ ....++++++.+ |+.+..+...
T Consensus 83 i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~--- 154 (271)
T 2ixe_A 83 LVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT---P-TMEEITAVAMESGAHDFISGFPQGYDTEVGETG--- 154 (271)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC---C-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG---
T ss_pred cccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC---C-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc---
Confidence 7432 23567999999988876 59999998863211 1 1011 122345667777 5665555543
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||+++ ....+|++++|.
T Consensus 155 --~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~ 230 (271)
T 2ixe_A 155 --NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLK 230 (271)
T ss_dssp --TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEE
T ss_pred --CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999864 4899999999864 445688888886
Q ss_pred cCcEEEEEcCCC
Q 001048 801 NGGRIIYFGPLG 812 (1174)
Q Consensus 801 ~~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 231 -~G~i~~~g~~~ 241 (271)
T 2ixe_A 231 -EGSVCEQGTHL 241 (271)
T ss_dssp -TTEEEEEECHH
T ss_pred -CCEEEEECCHH
Confidence 59999999864
No 43
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.3e-39 Score=393.47 Aligned_cols=214 Identities=21% Similarity=0.323 Sum_probs=175.3
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+ +.+++++|+|+|+++++||++||+||||||||||+|+|+|..+ |.+|+|.+||++
T Consensus 340 ~~i~~~~v~~~y-----------~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRY-----------FENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECS-----------SSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSB
T ss_pred CcEEEEEEEEEc-----------CCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEE
Confidence 359999999854 2234679999999999999999999999999999999999987 569999999998
Q ss_pred CCcc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCC
Q 001048 652 KVQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~ 721 (1174)
+... ..++.++||+|++.+++ .||+||+.++.. ..+.++ +.+.++..+ +.+..|+.+++.
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~~ 476 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFS-GTIKENLKWGRE-----DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVERG 476 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCS-EEHHHHHTTTCS-----SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEECSS
T ss_pred cccCCHHHHHhheEEECCCCcCcC-ccHHHHHhccCC-----CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhcCC
Confidence 7542 35678999999998875 599999987531 122222 223333333 344567888876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+ .+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +|+|+|++||+++ ....+|+++++.
T Consensus 477 ~-~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~- 551 (587)
T 3qf4_A 477 G-RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLH- 551 (587)
T ss_dssp S-CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEE-
T ss_pred C-CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEE-
Confidence 5 4699999999999999999999999999999999999999999999975 4899999999874 456889998886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 552 ~G~i~~~g~~~e 563 (587)
T 3qf4_A 552 EGKVAGFGTHKE 563 (587)
T ss_dssp TTEEEEEECHHH
T ss_pred CCEEEEECCHHH
Confidence 599999999854
No 44
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.7e-40 Score=360.35 Aligned_cols=212 Identities=25% Similarity=0.383 Sum_probs=173.4
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+ . +++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|+++.
T Consensus 2 l~~~~l~~~y-----------~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAY-----------D-DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECS-----------S-SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEEe-----------C-CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence 5778888742 1 23579999999999999999999999999999999999987 56899999999874
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCccccc-------ccCCCC
Q 001048 654 Q---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSL-------VGLPGV 723 (1174)
Q Consensus 654 ~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------~~~~~~ 723 (1174)
. ...++.++||+|++.+++ .||+||+.++.. + ... .++++++++.+++.+..+.. ++.+ .
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~-~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccC-c
Confidence 3 234567999999988876 599999987521 1 111 23467788888887765543 2222 3
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
..|||||||||+|||||+++|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++ ....+|+++++. +|
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~-~G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIE-KG 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEE-TT
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEE-CC
Confidence 5799999999999999999999999999999999999999999999987 6999999999864 446689888886 59
Q ss_pred EEEEEcCCCc
Q 001048 804 RIIYFGPLGQ 813 (1174)
Q Consensus 804 ~~v~~G~~~~ 813 (1174)
++++.|++++
T Consensus 214 ~i~~~g~~~~ 223 (243)
T 1mv5_A 214 QITGSGKHNE 223 (243)
T ss_dssp EECCCSCHHH
T ss_pred EEEEeCCHHH
Confidence 9999888643
No 45
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=5e-38 Score=387.26 Aligned_cols=215 Identities=24% Similarity=0.340 Sum_probs=178.0
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.++ .+++++|+|+|+++++||+++|+||||||||||+|+|+|..+ |.+|+|.+||++
T Consensus 340 ~~i~~~~v~~~y~-----------~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQ-----------GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcC-----------CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEE
Confidence 3599999998652 112579999999999999999999999999999999999987 568999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-------cccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-------IKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 721 (1174)
+.. ..+++.++||+|++.+++ .||+||+.++.. + ..+ +++++++++.+++.+ ..|+.+|+.
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~ 477 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN 477 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC
Confidence 643 345678999999998876 599999998631 1 112 234666777776653 356777765
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+ .+||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++.+ |+|+|++||+++ ..+.+|+++++.
T Consensus 478 ~-~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~- 552 (582)
T 3b5x_A 478 G-TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVD- 552 (582)
T ss_pred C-CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEE-
Confidence 4 46999999999999999999999999999999999999999999999865 999999999975 456789998886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 553 ~G~i~~~g~~~~ 564 (582)
T 3b5x_A 553 EGEIIERGRHAD 564 (582)
T ss_pred CCEEEEECCHHH
Confidence 599999999753
No 46
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=5.1e-39 Score=354.19 Aligned_cols=211 Identities=27% Similarity=0.401 Sum_probs=169.7
Q ss_pred EEEEeceEEEEeeCCcccccccccc-cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQT-RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
.++++|+++.+. .. .+++|+|+||++++||+++|+||||||||||+|+|+|..+ + +|+|.++|++
T Consensus 17 ~l~i~~l~~~y~-----------~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~ 82 (260)
T 2ghi_A 17 NIEFSDVNFSYP-----------KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKN 82 (260)
T ss_dssp CEEEEEEEECCT-----------TCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEE
T ss_pred eEEEEEEEEEeC-----------CCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEE
Confidence 489999998431 11 2469999999999999999999999999999999999876 4 7999999998
Q ss_pred CCcc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------CcccccccCC
Q 001048 652 KVQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-------GIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 721 (1174)
+... ..++.++||+|++.+++ .||+||+.++.. ... .+.+.++++.+++. +..|+.++..
T Consensus 83 i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~ 152 (260)
T 2ghi_A 83 VNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNK 152 (260)
T ss_dssp GGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSS
T ss_pred hhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCC
Confidence 7432 24567999999998875 699999987521 111 12345566666553 3344545443
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ |+|||++||+++ . .+.+|+++++.
T Consensus 153 -~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~-~-~~~~d~i~~l~- 227 (260)
T 2ghi_A 153 -GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLS-T-ISSAESIILLN- 227 (260)
T ss_dssp -SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-G-STTCSEEEEEE-
T ss_pred -cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-H-HHhCCEEEEEE-
Confidence 357999999999999999999999999999999999999999999999865 899999999975 3 35688888886
Q ss_pred CcEEEEEcCCC
Q 001048 802 GGRIIYFGPLG 812 (1174)
Q Consensus 802 ~G~~v~~G~~~ 812 (1174)
+|++++.|+++
T Consensus 228 ~G~i~~~g~~~ 238 (260)
T 2ghi_A 228 KGKIVEKGTHK 238 (260)
T ss_dssp TTEEEEEECHH
T ss_pred CCEEEEECCHH
Confidence 59999999864
No 47
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.7e-39 Score=353.03 Aligned_cols=207 Identities=19% Similarity=0.211 Sum_probs=171.5
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+... ...+++|+|+||+++ ||+++|+||||||||||+|+|+|.. + .+|+|.++|+++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECc
Confidence 5778888765210 011579999999999 9999999999999999999999987 4 4899999998864
Q ss_pred cccccceEE-EEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHHH
Q 001048 654 QHTFARISG-YCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLSTEQR 731 (1174)
Q Consensus 654 ~~~~~~~~~-~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqr 731 (1174)
....++.++ |++|++.+ .+||+||+.++.... .. ..++++++++.+++. +..++..+ +||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKLY-----KLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBGG-----GSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCChh-----hCCHHHH
Confidence 321255789 99999876 899999999876432 11 134578899999998 77776653 6999999
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhc-ceeEEecCcEEEEEcC
Q 001048 732 KRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD-DLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 732 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d-~~~~l~~~G~~v~~G~ 810 (1174)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |||++||+++ .+.+.+| +++++. +|++++.|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~-~G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLV-GNRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEE-CCEEEEecC
Confidence 999999999999999999999999999999999999998753 9999999975 4556788 888886 599999998
Q ss_pred CC
Q 001048 811 LG 812 (1174)
Q Consensus 811 ~~ 812 (1174)
++
T Consensus 210 ~~ 211 (263)
T 2pjz_A 210 VS 211 (263)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 48
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.2e-39 Score=398.67 Aligned_cols=214 Identities=27% Similarity=0.397 Sum_probs=175.8
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.+ +.+++++|+|+|+++++||++||+||||||||||+|+|+|..+ |.+|+|.+||++
T Consensus 338 ~~i~~~~v~~~y-----------~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQY-----------NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECS-----------CSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEEc-----------CCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 359999999854 2234579999999999999999999999999999999999987 569999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~ 721 (1174)
+.. ...++.++||+|++.+++. ||+||+.++.. ..+. +.+.+.++..++ .+..|+.+|+.
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~ 474 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGER 474 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred hhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccC
Confidence 754 2356779999999988765 99999987521 1122 223344444443 44567888876
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+. +||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++. +++|+|++||+++ . .+.+|+++++.
T Consensus 475 g~-~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~-~~~~d~i~~l~- 549 (578)
T 4a82_A 475 GV-KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS-T-ITHADKIVVIE- 549 (578)
T ss_dssp GT-TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG-G-TTTCSEEEEEE-
T ss_pred CC-cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-H-HHcCCEEEEEE-
Confidence 54 699999999999999999999999999999999999999999999885 4799999999986 3 45689998887
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 550 ~G~i~~~g~~~e 561 (578)
T 4a82_A 550 NGHIVETGTHRE 561 (578)
T ss_dssp TTEEEEEECHHH
T ss_pred CCEEEEECCHHH
Confidence 599999999754
No 49
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3e-38 Score=390.29 Aligned_cols=216 Identities=26% Similarity=0.387 Sum_probs=178.8
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.++. .+++++|+|+|+++++||++||+||||||||||+|+|+|..+ |.+|+|.+||+++.
T Consensus 342 i~~~~v~~~y~~----------~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 342 LEFKNVHFAYPA----------RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGHDIR 409 (595)
T ss_dssp EEEEEEEEECSS----------CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred EEEEEEEEEeCC----------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCEEhh
Confidence 899999986521 112469999999999999999999999999999999999987 56999999999875
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-------CcccccccCCCC
Q 001048 654 Q---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-------GIKDSLVGLPGV 723 (1174)
Q Consensus 654 ~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~~ 723 (1174)
. ..+++.++||+|++.+++ .||+||+.++.... ...+ +++++++++.+++. +..|+.+|+.+
T Consensus 410 ~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~- 481 (595)
T 2yl4_A 410 QLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKG- 481 (595)
T ss_dssp TBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSS-
T ss_pred hCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccCCC-
Confidence 4 234667999999998876 59999999863210 0112 24466777777653 44678887765
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
.+||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++.+ |+|+|++||+++ ..+.+|+++++. +|
T Consensus 482 ~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~-~G 557 (595)
T 2yl4_A 482 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS--TIKNANMVAVLD-QG 557 (595)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH--HHHHSSEEEEEE-TT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHcCCEEEEEE-CC
Confidence 46999999999999999999999999999999999999999999999876 899999999874 456789988886 59
Q ss_pred EEEEEcCCCc
Q 001048 804 RIIYFGPLGQ 813 (1174)
Q Consensus 804 ~~v~~G~~~~ 813 (1174)
++++.|++++
T Consensus 558 ~i~~~g~~~~ 567 (595)
T 2yl4_A 558 KITEYGKHEE 567 (595)
T ss_dssp EEEEEECSCC
T ss_pred EEEEECCHHH
Confidence 9999999865
No 50
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-38 Score=389.11 Aligned_cols=213 Identities=24% Similarity=0.389 Sum_probs=173.4
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.++ +++++|+|+|+++++||++||+||||||||||+|+|+|..+ |.+|+|.+||++
T Consensus 353 ~~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEE
Confidence 3599999998431 23579999999999999999999999999999999999987 569999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC-------CCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL-------DGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~ 721 (1174)
+.. ..+++.++||+|++.+++ .||+||+.++.. ..+.+ .++++++..++ .+..|+.+|+.
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~ 488 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTDN 488 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHHH
T ss_pred hhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCCHH----HHHHHHHHhCCHHHHHhccccccchhcCC
Confidence 754 235678999999998775 699999987521 11111 23333333333 34456777655
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+ .+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +|+|+|++||+++ . .+.+|+++++.
T Consensus 489 g-~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~-~~~~d~i~~l~- 563 (598)
T 3qf4_B 489 G-EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLN-T-IKNADLIIVLR- 563 (598)
T ss_dssp H-TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTT-H-HHHCSEEEEEC-
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-H-HHcCCEEEEEE-
Confidence 4 3699999999999999999999999999999999999999999999986 5999999999987 3 45689998886
Q ss_pred CcEEEEEcCCCc
Q 001048 802 GGRIIYFGPLGQ 813 (1174)
Q Consensus 802 ~G~~v~~G~~~~ 813 (1174)
+|++++.|++++
T Consensus 564 ~G~i~~~g~~~~ 575 (598)
T 3qf4_B 564 DGEIVEMGKHDE 575 (598)
T ss_dssp SSSEEECSCHHH
T ss_pred CCEEEEECCHHH
Confidence 599999999754
No 51
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.6e-38 Score=391.67 Aligned_cols=214 Identities=25% Similarity=0.344 Sum_probs=177.5
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ +.+++++|+|+|+++++||++||+||||||||||+|+|+|..+ |.+|+|.+||+++
T Consensus 341 ~i~~~~v~~~y-----------~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~ 407 (582)
T 3b60_A 341 DLEFRNVTFTY-----------PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDL 407 (582)
T ss_dssp CEEEEEEEECS-----------SSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEET
T ss_pred cEEEEEEEEEc-----------CCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEc
Confidence 48999999843 2112579999999999999999999999999999999999987 5699999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-------cccccccCCC
Q 001048 653 VQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-------IKDSLVGLPG 722 (1174)
Q Consensus 653 ~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 722 (1174)
.. ..+++.++||+|++.+++ .||+||+.++.. + ..+ +++++++++.+++.+ ..|+.+|+.+
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~ 478 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFN-DTVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENG 478 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTS
T ss_pred cccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCCC
Confidence 54 234567999999998876 599999988531 1 122 234666777776643 4577777665
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
.+||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++.+ |+|+|++||+++ . .+.+|+++++. +
T Consensus 479 -~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~-~~~~d~i~~l~-~ 553 (582)
T 3b60_A 479 -VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS-T-IEQADEIVVVE-D 553 (582)
T ss_dssp -CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG-G-TTTCSEEEEEE-T
T ss_pred -CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH-H-HHhCCEEEEEE-C
Confidence 46999999999999999999999999999999999999999999999865 999999999986 3 45789988886 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|++++.|++++
T Consensus 554 G~i~~~g~~~~ 564 (582)
T 3b60_A 554 GIIVERGTHSE 564 (582)
T ss_dssp TEEEEEECHHH
T ss_pred CEEEEecCHHH
Confidence 99999999753
No 52
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.7e-38 Score=342.11 Aligned_cols=201 Identities=23% Similarity=0.400 Sum_probs=159.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++.+ ..+++++|+|+||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|
T Consensus 6 ~l~~~~l~~~y-----------~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFW-----------EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECS-----------STTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---
T ss_pred eEEEEEEEEEe-----------CCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---
Confidence 58899998743 2224679999999999999999999999999999999999987 5699999998
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCC-------cccccccCCCCCC
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDG-------IKDSLVGLPGVNG 725 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~~ 725 (1174)
.++|++|++.+++. ||+||+.++.. .... ..++.++.+++.+ ..++.++.+ ...
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 37999999988775 99999987521 1111 1223344444432 223334433 357
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA-VKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++. ++++. +|+|||++||+++ ....+|+++++. +|+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~-~G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILH-EGS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHCSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH--HHHhCCEEEEEE-CCE
Confidence 999999999999999999999999999999999999999997 45554 4899999999864 345688888886 599
Q ss_pred EEEEcCCC
Q 001048 805 IIYFGPLG 812 (1174)
Q Consensus 805 ~v~~G~~~ 812 (1174)
+++.|+++
T Consensus 207 i~~~g~~~ 214 (229)
T 2pze_A 207 SYFYGTFS 214 (229)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99999864
No 53
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.1e-38 Score=343.28 Aligned_cols=204 Identities=25% Similarity=0.390 Sum_probs=158.2
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
++++|+++.+. ..++++|+|+||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|
T Consensus 4 l~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWA-----------RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESC-----------TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeC-----------CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 78899988531 113579999999999999999999999999999999999987 6799999998
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHH---HHHHcCCCC-cccccccCCCCCCCCHH
Q 001048 654 QHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNE---VLQTIELDG-IKDSLVGLPGVNGLSTE 729 (1174)
Q Consensus 654 ~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~l~l~~-~~~~~~~~~~~~~LSgG 729 (1174)
.++||+|++. ++.+||+||+.++... ..+ ..+.+.+ +.+.+++.+ ..++..+.+ +.+||||
T Consensus 67 ------~i~~v~Q~~~-~~~~tv~enl~~~~~~------~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~LSgG 131 (237)
T 2cbz_A 67 ------SVAYVPQQAW-IQNDSLRENILFGCQL------EEP-YYRSVIQACALLPDLEILPSGDRTEIGEK-GVNLSGG 131 (237)
T ss_dssp ------CEEEECSSCC-CCSEEHHHHHHTTSCC------CTT-HHHHHHHHTTCHHHHTTSTTGGGSEESTT-SBCCCHH
T ss_pred ------EEEEEcCCCc-CCCcCHHHHhhCcccc------CHH-HHHHHHHHHhhHHHHHhccccccccccCC-CCCCCHH
Confidence 2799999976 4689999999875321 111 1111111 122233221 122233332 3579999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 001048 730 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK---NVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII 806 (1174)
Q Consensus 730 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~---~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v 806 (1174)
|||||+|||||+.+|++|+|||||+|||+.++..+++.|+ ++. +|+|||++||+++. + ..+|+++++. +|+++
T Consensus 132 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~-~G~i~ 207 (237)
T 2cbz_A 132 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMS-GGKIS 207 (237)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEE-TTEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEe-CCEEE
Confidence 9999999999999999999999999999999999999995 443 48999999999863 3 5688888886 59999
Q ss_pred EEcCCCc
Q 001048 807 YFGPLGQ 813 (1174)
Q Consensus 807 ~~G~~~~ 813 (1174)
+.|++++
T Consensus 208 ~~g~~~~ 214 (237)
T 2cbz_A 208 EMGSYQE 214 (237)
T ss_dssp EEECHHH
T ss_pred EeCCHHH
Confidence 9998643
No 54
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.8e-39 Score=368.85 Aligned_cols=213 Identities=19% Similarity=0.283 Sum_probs=175.1
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++||++.+. .+++.+|+||||+|++||+++|+||||||||||||+|+|..+ .+|+|.++|++
T Consensus 18 ~~i~~~~l~~~y~-----------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~ 83 (390)
T 3gd7_A 18 GQMTVKDLTAKYT-----------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVS 83 (390)
T ss_dssp CCEEEEEEEEESS-----------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCB
T ss_pred CeEEEEEEEEEec-----------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEE
Confidence 3589999998542 234679999999999999999999999999999999999874 58999999998
Q ss_pred CCcc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccC------CC
Q 001048 652 KVQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGL------PG 722 (1174)
Q Consensus 652 ~~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~------~~ 722 (1174)
+... ..++.+|||+|++.+++ +||+||+.+.. ... .++++++++.++|.+..++.... ..
T Consensus 84 i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~ 152 (390)
T 3gd7_A 84 WDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152 (390)
T ss_dssp TTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTT
T ss_pred CCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccc
Confidence 7542 24577999999998886 69999996321 111 34577889999998766655321 11
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 723 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..+|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++. +++|+|++||+++ ....+|++++|. +
T Consensus 153 g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~-~ 228 (390)
T 3gd7_A 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIE-E 228 (390)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEE-T
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEE-C
Confidence 13499999999999999999999999999999999999999999999864 4899999999964 456688888886 5
Q ss_pred cEEEEEcCCCc
Q 001048 803 GRIIYFGPLGQ 813 (1174)
Q Consensus 803 G~~v~~G~~~~ 813 (1174)
|+++..|++++
T Consensus 229 G~i~~~g~~~e 239 (390)
T 3gd7_A 229 NKVRQYDSILE 239 (390)
T ss_dssp TEEEEESSHHH
T ss_pred CEEEEECCHHH
Confidence 99999999865
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.1e-38 Score=418.84 Aligned_cols=216 Identities=27% Similarity=0.382 Sum_probs=182.4
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++|+||+|.++. .+++++|+|+|++|++||.+||+||||||||||+++|.|.++ |.+|+|.+||.+
T Consensus 414 g~I~~~nvsF~Y~~----------~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~ 481 (1321)
T 4f4c_A 414 GDITVENVHFTYPS----------RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVD 481 (1321)
T ss_dssp CCEEEEEEEECCSS----------STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CcEEEEEeeeeCCC----------CCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc--cccCcccCCCcc
Confidence 35999999996532 134689999999999999999999999999999999999987 679999999999
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcC-------CCCcccccccCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIE-------LDGIKDSLVGLP 721 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~ 721 (1174)
+.+ ..+|+.++||+|++.++ +.||+|||.|+.. ..+. +++.++++..+ |++..||.+|+.
T Consensus 482 i~~~~~~~lr~~i~~v~Q~~~Lf-~~TI~eNI~~g~~-----~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~ 551 (1321)
T 4f4c_A 482 VRDINLEFLRKNVAVVSQEPALF-NCTIEENISLGKE-----GITR----EEMVAACKMANAEKFIKTLPNGYNTLVGDR 551 (1321)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCC-SEEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSS
T ss_pred chhccHHHHhhcccccCCcceee-CCchhHHHhhhcc-----cchH----HHHHHHHHHccchhHHHcCCCCCccEecCC
Confidence 765 34677899999998775 5799999998731 2222 23444444443 456789999998
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 722 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 722 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
|. .||||||||++||||++++|+||+||||||+||+.+++.+.+.|+++.+ |+|+|+++|+++ ....+|++++|.
T Consensus 552 G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl~- 626 (1321)
T 4f4c_A 552 GT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLS--TIRNADLIISCK- 626 (1321)
T ss_dssp SC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEEE-
T ss_pred CC-CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHH--HHHhCCEEEEee-
Confidence 76 5999999999999999999999999999999999999999999999864 899999999986 467899999986
Q ss_pred CcEEEEEcCCCcc
Q 001048 802 GGRIIYFGPLGQH 814 (1174)
Q Consensus 802 ~G~~v~~G~~~~~ 814 (1174)
+|++++.|+.++.
T Consensus 627 ~G~ive~Gth~eL 639 (1321)
T 4f4c_A 627 NGQVVEVGDHRAL 639 (1321)
T ss_dssp TTEEEEEECHHHH
T ss_pred CCeeeccCCHHHH
Confidence 5999999998653
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.1e-35 Score=394.50 Aligned_cols=218 Identities=27% Similarity=0.389 Sum_probs=176.1
Q ss_pred cEEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 572 LTVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++++|+++.++. .+++++|+|+||++++||++||+||||||||||+++|+|..+ |.+|+|.+||++
T Consensus 386 g~i~~~~v~~~y~~----------~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g~~ 453 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPS----------RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD--PLDGMVSIDGQD 453 (1284)
T ss_dssp CCEEEEEEEECCSS----------TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEEcCC----------CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEE
Confidence 35999999985421 123579999999999999999999999999999999999987 569999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHH-----HHHHHHcCCCCcccccccCCCC
Q 001048 652 KVQ---HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFV-----NEVLQTIELDGIKDSLVGLPGV 723 (1174)
Q Consensus 652 ~~~---~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~l~l~~~~~~~~~~~~~ 723 (1174)
+.. ...++.+|||+|++.+++ .||+||+.++.. ..+.++..+.. ++.++ .+.+..|+.+|+.+.
T Consensus 454 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~t~~~~~g~ 525 (1284)
T 3g5u_A 454 IRTINVRYLREIIGVVSQEPVLFA-TTIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIM--KLPHQFDTLVGERGA 525 (1284)
T ss_dssp GGGSCHHHHHHHEEEECSSCCCCS-SCHHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHH--HSTTGGGCCCSSSSC
T ss_pred HHhCCHHHHHhheEEEcCCCccCC-ccHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHH--hccccccccccCCCC
Confidence 754 345677999999998875 499999998732 12222222111 22232 244567888887664
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 724 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
+||||||||++|||||+++|+||+||||||+||+.+++.+.+.++++. +|+|+|+++|+++ ....+|+++++. +|
T Consensus 526 -~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~i~~~d~i~vl~-~G 600 (1284)
T 3g5u_A 526 -QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS--TVRNADVIAGFD-GG 600 (1284)
T ss_dssp -SSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH--HHTTCSEEEECS-SS
T ss_pred -ccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEEE-CC
Confidence 699999999999999999999999999999999999999999998875 4999999999874 456688888886 69
Q ss_pred EEEEEcCCCcc
Q 001048 804 RIIYFGPLGQH 814 (1174)
Q Consensus 804 ~~v~~G~~~~~ 814 (1174)
++++.|++++.
T Consensus 601 ~i~~~g~~~~l 611 (1284)
T 3g5u_A 601 VIVEQGNHDEL 611 (1284)
T ss_dssp CCCCEECHHHH
T ss_pred EEEEECCHHHH
Confidence 99999998653
No 57
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.3e-36 Score=335.57 Aligned_cols=197 Identities=22% Similarity=0.402 Sum_probs=148.1
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.++++|+++. .+++|+|+||+|++||+++|+||||||||||+|+|+|..+ |.+|+|.++|
T Consensus 40 ~l~~~~l~~~---------------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLL---------------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp -------------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEc---------------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 4788888762 2469999999999999999999999999999999999987 6799999988
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCc-------ccccccCCCCCC
Q 001048 653 VQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGI-------KDSLVGLPGVNG 725 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~~~~ 725 (1174)
.++|++|++.+++ .||+||+. +. . .... .+++.++.+++.+. .++.++.. ...
T Consensus 100 -------~i~~v~Q~~~l~~-~tv~enl~-~~--~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMP-GTIKENII-GV--S----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 159 (290)
T ss_dssp -------CEEEECSSCCCCS-SBHHHHHH-TT--C----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCc-ccHHHHhh-Cc--c----cchH----HHHHHHHHhChHHHHHhccccccchhcCc-cCc
Confidence 3799999988877 49999997 32 1 1111 12334444444322 23333332 347
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAV-KNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l-~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.+ +++. +|+|||++||+++ ....+|+++++. +|+
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~-~G~ 235 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILH-EGS 235 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEE-CCe
Confidence 9999999999999999999999999999999999999999974 5554 4899999999864 446689988886 599
Q ss_pred EEEEcCCCc
Q 001048 805 IIYFGPLGQ 813 (1174)
Q Consensus 805 ~v~~G~~~~ 813 (1174)
+++.|++++
T Consensus 236 i~~~g~~~~ 244 (290)
T 2bbs_A 236 SYFYGTFSE 244 (290)
T ss_dssp EEEEECHHH
T ss_pred EEEeCCHHH
Confidence 999998754
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=5.5e-31 Score=330.14 Aligned_cols=207 Identities=23% Similarity=0.337 Sum_probs=135.9
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHH---------------------HHHhCCCCCC--e---EEEEEEECCee
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLM---------------------DVLSGRKTGG--I---IEGDIRIGGYP 651 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl---------------------~~l~g~~~~~--~---~~G~i~~~g~~ 651 (1174)
++.+|+||||+|++||+++|+||||||||||+ +++.|...++ . ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45799999999999999999999999999997 6776654421 1 14567777765
Q ss_pred CCcccccceEEEEccCCC-------------------CCCCCCHHHHHHHHHhhccCCCCCHHHHH------HHHHHHHH
Q 001048 652 KVQHTFARISGYCEQNDI-------------------HSPNITVEESIVFSAWLRLSTQIDSKTKA------EFVNEVLQ 706 (1174)
Q Consensus 652 ~~~~~~~~~~~~v~Q~~~-------------------~~~~lTv~e~l~~~~~~~~~~~~~~~~~~------~~~~~~l~ 706 (1174)
... ..++.+++|+|... .++.+||+||+.+...+..... ...... ....++++
T Consensus 110 ~~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 110 TSR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHH
T ss_pred hhc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHH
Confidence 432 12233455555432 2357899999987533221110 000000 01123578
Q ss_pred HcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhhcCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec
Q 001048 707 TIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH 783 (1174)
Q Consensus 707 ~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~--illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H 783 (1174)
.+||.+. .|+.++ +|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||+|||
T Consensus 188 ~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtH 262 (670)
T 3ux8_A 188 NVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262 (670)
T ss_dssp HTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HcCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 8898764 466654 699999999999999999998 99999999999999999999999999888999999999
Q ss_pred CCCHHHHHHhcceeEEe-----cCcEEEEEcCCCc
Q 001048 784 QPSIDIFEAFDDLVLMK-----NGGRIIYFGPLGQ 813 (1174)
Q Consensus 784 ~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~~ 813 (1174)
++ +....+|++++|. ++|++++.|++++
T Consensus 263 d~--~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~ 295 (670)
T 3ux8_A 263 DE--DTMLAADYLIDIGPGAGIHGGEVVAAGTPEE 295 (670)
T ss_dssp CH--HHHHHCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred CH--HHHhhCCEEEEecccccccCCEEEEecCHHH
Confidence 86 4566789988882 4699999999864
No 59
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=4.9e-31 Score=322.47 Aligned_cols=180 Identities=22% Similarity=0.259 Sum_probs=144.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEE---------EECCeeCCcc-----cccceEEEEc
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDI---------RIGGYPKVQH-----TFARISGYCE 665 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i---------~~~g~~~~~~-----~~~~~~~~v~ 665 (1174)
.+|+|+| ++++||+++|+||||||||||||+|+|..+ |.+|++ .++|.++... ..+..+++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~--p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~ 182 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI--PNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKP 182 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC--CCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC--CCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEee
Confidence 4899999 999999999999999999999999999876 346764 3456543210 1123468888
Q ss_pred cCCCCCC---CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhc
Q 001048 666 QNDIHSP---NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA 742 (1174)
Q Consensus 666 Q~~~~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~ 742 (1174)
|.....+ ..||.||+... .. .++++++++.+||.+..|+.++ +|||||||||+|||||+.
T Consensus 183 q~~~~~~~~~~~tv~e~l~~~-------~~-----~~~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~~ 245 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELLKKV-------DE-----VGKFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALLR 245 (607)
T ss_dssp SCGGGGGGTCCSBHHHHHHHT-------CC-----SSCHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHHS
T ss_pred chhhhchhhccccHHHHhhhh-------HH-----HHHHHHHHHHcCCCchhCCChh-----hCCHHHHHHHHHHHHHhc
Confidence 8643222 24999998531 10 1346789999999988887764 699999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 743 NPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 743 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|+++++.
T Consensus 246 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~ 302 (607)
T 3bk7_A 246 KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVY 302 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEEC
Confidence 99999999999999999999999999999877999999999864 4556778888875
No 60
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=7.6e-31 Score=317.98 Aligned_cols=180 Identities=22% Similarity=0.278 Sum_probs=144.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEE---------EECCeeCCc-----ccccceEEEEc
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDI---------RIGGYPKVQ-----HTFARISGYCE 665 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i---------~~~g~~~~~-----~~~~~~~~~v~ 665 (1174)
.+|+|+| +|++||+++|+||||||||||+|+|+|..+ |.+|++ .++|.+... ...+..+++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~--p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 112 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI--PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKP 112 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEEC
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhh
Confidence 4899999 999999999999999999999999999876 346764 345654321 01123468898
Q ss_pred cCCCCCC---CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhc
Q 001048 666 QNDIHSP---NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA 742 (1174)
Q Consensus 666 Q~~~~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~ 742 (1174)
|+....+ ..|+.|++... . ..++++++++.+|+.+..++.++ +|||||||||+|||||+.
T Consensus 113 q~~~~~~~~~~~~v~e~~~~~---~---------~~~~~~~~l~~lgl~~~~~~~~~-----~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 113 QYVDLIPKAVKGKVIELLKKA---D---------ETGKLEEVVKALELENVLEREIQ-----HLSGGELQRVAIAAALLR 175 (538)
T ss_dssp SCGGGSGGGCCSBHHHHHHHH---C---------SSSCHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHS
T ss_pred hhhhhcchhhhccHHHHHhhh---h---------HHHHHHHHHHHcCCChhhhCChh-----hCCHHHHHHHHHHHHHhc
Confidence 8744333 24899987531 0 01346789999999888777764 699999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 743 NPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 743 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
+|++|||||||++||+.++..+.+.|++++++|.|||++||+++ .+...+|+++++.
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl~ 232 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVVY 232 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEc
Confidence 99999999999999999999999999999878999999999865 5666788888885
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=1.6e-29 Score=317.79 Aligned_cols=195 Identities=18% Similarity=0.267 Sum_probs=156.2
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.+...|+++.+ +++.+|+|+||++++||+++|+||||||||||||+|+| |+| +|.+.
T Consensus 435 ~L~~~~ls~~y-------------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAY-------------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEE-------------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 45566777653 24579999999999999999999999999999999995 222 44432
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-CcccccccCCCCCCCCHHH
Q 001048 653 VQHTFARISGYCEQND-IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSLVGLPGVNGLSTEQ 730 (1174)
Q Consensus 653 ~~~~~~~~~~~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGq 730 (1174)
.. ...++|++|+. .+++.+||.||+.+ .. . .. .++++++++.+|+. +..++.++ +|||||
T Consensus 492 ~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~--~-~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGq 553 (986)
T 2iw3_A 492 QE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SG--V-GT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGW 553 (986)
T ss_dssp TT---TSCEEETTCCCCCCCTTSBHHHHHHT--TC--S-SC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHH
T ss_pred cc---ceeEEEEcccccccccCCcHHHHHHH--hh--c-CH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHHH
Confidence 11 12368999874 67789999999975 11 1 11 45688899999995 56666654 699999
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEE-EEc
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRII-YFG 809 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v-~~G 809 (1174)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|++ .|+|+|++||+++ .+.+.+|+++++. +|+++ +.|
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~-~G~iv~~~G 628 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYE-GLKLRKYKG 628 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEE-TTEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEE-CCeeecCCC
Confidence 9999999999999999999999999999999999999988 5899999999864 5667788888886 58986 688
Q ss_pred CCCc
Q 001048 810 PLGQ 813 (1174)
Q Consensus 810 ~~~~ 813 (1174)
+.++
T Consensus 629 ~~~e 632 (986)
T 2iw3_A 629 NFTE 632 (986)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8643
No 62
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.95 E-value=1.3e-28 Score=297.32 Aligned_cols=173 Identities=20% Similarity=0.222 Sum_probs=132.3
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEE-----------EECCeeCCcc-----cccceEEEEccC----C
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDI-----------RIGGYPKVQH-----TFARISGYCEQN----D 668 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i-----------~~~g~~~~~~-----~~~~~~~~v~Q~----~ 668 (1174)
+++||++||+||||||||||+|+|+|..+ |.+|+| .++|.++... .....+....|. +
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~--p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEII--PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSC--CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 46999999999999999999999999877 457877 5666554210 001122333333 2
Q ss_pred CCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 001048 669 IHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 669 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ill 748 (1174)
.+ ...|++|++.-. . ..++++++++.+++.+..|+.++ .|||||||||+|||||+.+|++|+
T Consensus 100 ~~-~~~~v~~~l~~~---~---------~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~ill 161 (538)
T 3ozx_A 100 KF-LKGTVNEILTKI---D---------ERGKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYI 161 (538)
T ss_dssp TT-CCSBHHHHHHHH---C---------CSSCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hh-ccCcHHHHhhcc---h---------hHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEE
Confidence 22 335888866421 0 11246788999999988888764 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 804 (1174)
|||||++||+.++..+.+.|+++++ |+|||+++|+++ .+...+|+++++. +|.
T Consensus 162 lDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~-~~~ 214 (538)
T 3ozx_A 162 FDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIY-GES 214 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEE-EET
T ss_pred EECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEec-CCc
Confidence 9999999999999999999999976 999999999975 5666777777775 443
No 63
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.6e-28 Score=292.65 Aligned_cols=188 Identities=21% Similarity=0.318 Sum_probs=138.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEE-----------ECCeeCCc---ccccce--EEE
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR-----------IGGYPKVQ---HTFARI--SGY 663 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~---~~~~~~--~~~ 663 (1174)
..|++++ .+++||+++|+||||||||||||+|+|..+ |.+|+|. +.|.+... ....+. ..+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~--P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 168 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK--PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAII 168 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC--CCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhh
Confidence 4677777 689999999999999999999999999887 4567762 23322110 000111 123
Q ss_pred EccCCCC------CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHH
Q 001048 664 CEQNDIH------SPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIA 737 (1174)
Q Consensus 664 v~Q~~~~------~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia 737 (1174)
.+|.... -+..++.+++.... . ...++++++++.+++.+..|+.++ +|||||||||+||
T Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGe~Qrv~iA 233 (608)
T 3j16_B 169 KPQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRDIE-----KLSGGELQRFAIG 233 (608)
T ss_dssp ECCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSCTT-----TCCHHHHHHHHHH
T ss_pred chhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCChH-----HCCHHHHHHHHHH
Confidence 3332111 11235666554310 1 113457889999999988888764 6999999999999
Q ss_pred HHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 001048 738 VELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIY 807 (1174)
Q Consensus 738 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~ 807 (1174)
|||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+...+|+++++. +|..++
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~-~~~~~~ 301 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIY-GVPSVY 301 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEE-SCTTTE
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCcccc
Confidence 9999999999999999999999999999999999888999999999975 5667788888885 455444
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.92 E-value=9e-28 Score=284.15 Aligned_cols=197 Identities=15% Similarity=0.091 Sum_probs=148.0
Q ss_pred cccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEE-E-EEECCeeCCcccccceEEEEccCCC---CCCCCCH
Q 001048 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEG-D-IRIGGYPKVQHTFARISGYCEQNDI---HSPNITV 676 (1174)
Q Consensus 602 L~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G-~-i~~~g~~~~~~~~~~~~~~v~Q~~~---~~~~lTv 676 (1174)
+.++|+++++||+++|+||||||||||+|+|+|... +.+| + |.+||. .++.++|++|+.. +.+.+||
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 347999999999999999999999999999999886 5689 8 999982 2456899999874 4456899
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHH--hhcCCcE----EEEe
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVE--LVANPSI----IFMD 750 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~a--l~~~p~i----lllD 750 (1174)
+||+ |+....... . ..+++.++++.+|+.+..+ ..+|||||||||+|||+ |+.+|++ ||||
T Consensus 200 ~eni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLD 266 (460)
T 2npi_A 200 QLPT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVD 266 (460)
T ss_dssp TCTT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEE
T ss_pred hhhh-cccccccCc--c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEe
Confidence 9998 653321110 0 1123455677778776554 23699999999999999 9999999 9999
Q ss_pred C-CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC--H---HHHHHhcc-----eeEEecCcEEEEEcCCCccc----
Q 001048 751 E-PTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPS--I---DIFEAFDD-----LVLMKNGGRIIYFGPLGQHS---- 815 (1174)
Q Consensus 751 E-PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~--~---~~~~~~d~-----~~~l~~~G~~v~~G~~~~~~---- 815 (1174)
| ||++||+. ...+.+++++ .|+|+|+++|+.+ . ...+.+|+ +++|.++|+++ .|++++..
T Consensus 267 EpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~ 341 (460)
T 2npi_A 267 TPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQR 341 (460)
T ss_dssp CCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHH
T ss_pred CCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhH
Confidence 9 99999999 5445544443 3789999999976 2 34467788 88886368898 88875431
Q ss_pred hhhhhhhhh
Q 001048 816 CKVIEYFEC 824 (1174)
Q Consensus 816 ~~~~~~f~~ 824 (1174)
..+.+||..
T Consensus 342 ~~i~~~f~g 350 (460)
T 2npi_A 342 TSIREYFYG 350 (460)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhCC
Confidence 234566643
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=9.6e-25 Score=259.11 Aligned_cols=205 Identities=17% Similarity=0.194 Sum_probs=142.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCC------------------------------------CeEE
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG------------------------------------GIIE 642 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~------------------------------------~~~~ 642 (1174)
..+++++|+++.+| +++|+|||||||||||++|.+...+ .+.+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35789999999999 9999999999999999999664321 0126
Q ss_pred EEEEECCeeCCccc---c-cceEEEEccCCCCCCCCCHHHHHHHHHhhcc-----------------------CCCCC--
Q 001048 643 GDIRIGGYPKVQHT---F-ARISGYCEQNDIHSPNITVEESIVFSAWLRL-----------------------STQID-- 693 (1174)
Q Consensus 643 G~i~~~g~~~~~~~---~-~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~-----------------------~~~~~-- 693 (1174)
|++.+||++..... . +..+++++|++.++. .+..+...|...... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 88999999875421 2 234799999876654 355555444221100 00000
Q ss_pred --------------------------------HHHHHHHHHHHHHHcCCCCcc----------------cc---cccCC-
Q 001048 694 --------------------------------SKTKAEFVNEVLQTIELDGIK----------------DS---LVGLP- 721 (1174)
Q Consensus 694 --------------------------------~~~~~~~~~~~l~~l~l~~~~----------------~~---~~~~~- 721 (1174)
.....+.+++.++.+++.+.. +. .+...
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 000112344555556554310 00 11110
Q ss_pred -----CCCC-CCHHHHHHHHHHHHhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHh
Q 001048 722 -----GVNG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAF 793 (1174)
Q Consensus 722 -----~~~~-LSgGqrqRv~ia~al~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~ 793 (1174)
..+. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||+|||++ ++.+.+
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhc
Confidence 0111 6999999999999999999 9999999999999999999999999998 599999999986 567788
Q ss_pred cceeEE----ecCcEEEEEc
Q 001048 794 DDLVLM----KNGGRIIYFG 809 (1174)
Q Consensus 794 d~~~~l----~~~G~~v~~G 809 (1174)
|+++++ . +|+++...
T Consensus 363 d~i~~l~k~~~-~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVE-DGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEE-TTEEEEEE
T ss_pred CeEEEEEEecc-CCceEEEE
Confidence 988888 5 47877553
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.89 E-value=1.6e-26 Score=245.29 Aligned_cols=146 Identities=14% Similarity=0.169 Sum_probs=100.8
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+++.+|+|+ ++||+++|+||||||||||+++|+|. + |.+|+|............++.+||++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 346799996 89999999999999999999999998 6 45677632111111123456789999975
Q ss_pred HHHH-HHHHhh--ccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 677 EESI-VFSAWL--RLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 677 ~e~l-~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
+||+ .+.... ....... .++++++++. + + ||||||+|||||+.+|++|||||||
T Consensus 76 ~enl~~~~~~~~~~~~~~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEPt 132 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDMVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEAQ 132 (208)
T ss_dssp ----CTTTHHHHHHHTTTSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSGG
T ss_pred HHHHHHHHHHHHHHHHHhcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCCc
Confidence 4555 231100 0000001 1234455543 2 2 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 754 SGLDARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
+| ++..+.+.|+++ ++|+||| +||+++
T Consensus 133 s~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 133 NT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred cc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 99 888999999988 6689999 999864
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.88 E-value=5.2e-24 Score=219.97 Aligned_cols=142 Identities=16% Similarity=0.212 Sum_probs=99.4
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCC-CCCCHHHHHHH
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHS-PNITVEESIVF 682 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~-~~lTv~e~l~~ 682 (1174)
||||++++||+++|+||||||||||+|++.+... . +++. ...|+++|++... ...++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--~------~~~d--------~~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--V------ISSD--------FCRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--E------EEHH--------HHHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--E------EccH--------HHHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999764221 1 1110 1126677764211 0011111111
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHH---
Q 001048 683 SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 759 (1174)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~--- 759 (1174)
......+ ..+.....|.. ...|||||||++|||+++.+|++|+|||||++||+.
T Consensus 64 ----------------~~~~~~~-~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YIVSKRL-QLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HHHHHHH-HTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HHHHHHH-hCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 1111222 23443333322 237999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHHcCCEEEEEecCC
Q 001048 760 -------------AAATVMRAVKNVVETGRTVVCTIHQP 785 (1174)
Q Consensus 760 -------------~~~~i~~~l~~l~~~g~tvi~~~H~~ 785 (1174)
....+.+.|++++++|.|+|++||++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~ 159 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP 159 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH
Confidence 55888999998887799999999985
No 68
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.87 E-value=8.5e-23 Score=231.97 Aligned_cols=140 Identities=21% Similarity=0.275 Sum_probs=116.9
Q ss_pred chhhhcCCCCC-------ccHHHHHHHh----hhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 5 KLEKLAGIFPD-------PDVDAYMKAI----SAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 5 ~~~~~~~~~~~-------~~v~~~~~~~----~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
+.|+..|..+| .+|.+.+... ...+.+..++++++|+.+||.+.+|..+++ |||||||||+|||
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~-----LSGGqkQRVaIAr 176 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIAR 176 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTT-----SCHHHHHHHHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHH
Confidence 34666777666 3566555422 123455567899999999999999998876 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
||+.+|+||+|||||||||+.++..+++.|+++.+..|.|+|+..|.. ..+.+++|||++|.+|++++.|++++..
T Consensus 177 AL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 177 ALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp HTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999877799999877644 4667889999999999999999987653
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.87 E-value=4.7e-22 Score=230.09 Aligned_cols=82 Identities=24% Similarity=0.441 Sum_probs=73.7
Q ss_pred CCCCCHHHHHHHHHHHHhh------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcce
Q 001048 723 VNGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia~al~------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~--~~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR--EFSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH--HHHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch--HHHHhCCEE
Confidence 3469999999999999999 79999999999999999999999999999987899999999986 456778999
Q ss_pred eEEecCcEEEE
Q 001048 797 VLMKNGGRIIY 807 (1174)
Q Consensus 797 ~~l~~~G~~v~ 807 (1174)
+++. +|+++.
T Consensus 355 ~~l~-~G~i~~ 364 (365)
T 3qf7_A 355 LRIT-GGVVVN 364 (365)
T ss_dssp EEEE-TTEEC-
T ss_pred EEEE-CCEEEe
Confidence 8886 588864
No 70
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.87 E-value=2.9e-22 Score=228.66 Aligned_cols=86 Identities=24% Similarity=0.218 Sum_probs=72.1
Q ss_pred CCCCHHHHHHHHHHHHhh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcce--e
Q 001048 724 NGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL--V 797 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~--~ 797 (1174)
..||||||||++||++|+ .+|++|+|||||++||+..+..+.+.|++++ +|.|+|++||++ ++.+.+|++ +
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~~v 294 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLHGV 294 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEEEE
Confidence 469999999999999997 6889999999999999999999999999985 489999999996 456778865 6
Q ss_pred EEecCcEEEEEcCCC
Q 001048 798 LMKNGGRIIYFGPLG 812 (1174)
Q Consensus 798 ~l~~~G~~v~~G~~~ 812 (1174)
++.+|...+.....+
T Consensus 295 ~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 295 TMVNGVSAIVPVEVE 309 (322)
T ss_dssp EESSSCEEEEECCC-
T ss_pred EEeCCEEEEEEEEcc
Confidence 776655666555543
No 71
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.86 E-value=2.7e-22 Score=221.58 Aligned_cols=139 Identities=24% Similarity=0.253 Sum_probs=115.3
Q ss_pred chhhhcCCCCCc--------cHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHH
Q 001048 5 KLEKLAGIFPDP--------DVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 5 ~~~~~~~~~~~~--------~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
+.|+..|+.||. +|.+.+.... ..+.+..++++++++.+||++.+|..+++ |||||||||+||
T Consensus 81 ~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgGqkQRv~iA 155 (275)
T 3gfo_A 81 KLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHC-----LSFGQKKRVAIA 155 (275)
T ss_dssp HHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHH
T ss_pred HHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCccc-----CCHHHHHHHHHH
Confidence 456778887773 3555444221 22344556799999999999999998866 999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
++|+.+|+||+|||||||||+.++..+++.|+++++..|+|+|++.|.+. .+.+++|+|++|.+|++++.|++++.
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~ 231 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEV 231 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999997334899998877654 56688999999999999999998764
No 72
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.85 E-value=1.3e-24 Score=252.14 Aligned_cols=171 Identities=16% Similarity=0.195 Sum_probs=135.3
Q ss_pred ccccccceeEEeCCe--------------------EEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccccc
Q 001048 599 LQLLSDITGTFRPGI--------------------LTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFA 658 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge--------------------~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~ 658 (1174)
+.+|++||+++++|| ++||+||||||||||+|+|+|..+ +.+|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC--------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc----e
Confidence 468999999999999 999999999999999999999876 45799999887643 1
Q ss_pred ceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH--HHHHHHH
Q 001048 659 RISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE--QRKRLTI 736 (1174)
Q Consensus 659 ~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG--qrqRv~i 736 (1174)
.++++|++ .++.+|+.||+.++. . .+.+++.++.+++.+.. ... .|||| ||||+.|
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~-~~~------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYD-FFI------IISATRFKKNDIDI 167 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCS-EEE------EEESSCCCHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccC-CeE------EeCCCCccHHHHHH
Confidence 17899975 567889999875531 1 12367788888887653 222 28999 9999999
Q ss_pred HHHhhc----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HcC----CEEEEEecCCCH-HHHHHhcce
Q 001048 737 AVELVA----------NPSIIFMDEPTSGLDARAAATVMRAVKNVV-----ETG----RTVVCTIHQPSI-DIFEAFDDL 796 (1174)
Q Consensus 737 a~al~~----------~p~illlDEPtsgLD~~~~~~i~~~l~~l~-----~~g----~tvi~~~H~~~~-~~~~~~d~~ 796 (1174)
|++|+. +|++++|||||+|||+.++.++++.|+++. +.| .++++++|+.+. ++-+.+|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999984 322 678899998752 255566655
Q ss_pred e
Q 001048 797 V 797 (1174)
Q Consensus 797 ~ 797 (1174)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 4
No 73
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.85 E-value=2e-21 Score=213.50 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=112.9
Q ss_pred hhhhcCCCCC-------ccHHHHHHHhh-----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHH
Q 001048 6 LEKLAGIFPD-------PDVDAYMKAIS-----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 6 ~~~~~~~~~~-------~~v~~~~~~~~-----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~ 73 (1174)
.|+..|+.|| .+|.+.+.... ..+.+..++++++++.+||.+..|..+++ |||||||||+||+
T Consensus 98 ~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgGqkQRv~lAr 172 (263)
T 2olj_A 98 VREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDS-----LSGGQAQRVAIAR 172 (263)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHH
T ss_pred HhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhh-----CCHHHHHHHHHHH
Confidence 3556777666 36666665421 12233456789999999999999988866 9999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|+.+|++|+|||||+|||+.++..+++.|+++++. |+|+|++.|.+ ..+.+.+|+|++|.+|++++.|++++.
T Consensus 173 aL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
T 2olj_A 173 ALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDL 246 (263)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999765 88999987754 456678999999999999999987654
No 74
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.85 E-value=1.5e-21 Score=211.84 Aligned_cols=138 Identities=22% Similarity=0.237 Sum_probs=112.9
Q ss_pred hhhhcCCCCCc-------cHHHHHHHhhh-cc-chhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHh
Q 001048 6 LEKLAGIFPDP-------DVDAYMKAISA-EG-LENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIV 76 (1174)
Q Consensus 6 ~~~~~~~~~~~-------~v~~~~~~~~~-~~-~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv 76 (1174)
.|+..|+.||. ++.+.+..... .+ .+..++++++++.+||.+..|..+++ |||||||||+||++|+
T Consensus 68 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 68 ERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----LSGGERQRVALARALV 142 (240)
T ss_dssp TTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGG-----SCHHHHHHHHHHHHHT
T ss_pred hhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhh-----CCHHHHHHHHHHHHHH
Confidence 34567777763 56666653211 11 12245789999999999999998866 9999999999999999
Q ss_pred cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 77 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 77 ~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
.+|++|+|||||+|||+.++..+++.|+++++..|+|+|++.|.+ .++.+.+|++++|.+|++++.|++++.
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999765588999887754 456788999999999999999987654
No 75
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.85 E-value=1.3e-21 Score=215.45 Aligned_cols=137 Identities=17% Similarity=0.180 Sum_probs=112.9
Q ss_pred hhhhcCCCCC-------ccHHHHHHHhh-----hccchhhhHHHHHHHHhCCccc-ccccccCCCcccCCccccchhHHH
Q 001048 6 LEKLAGIFPD-------PDVDAYMKAIS-----AEGLENSLQTDYILKILGLDIC-ADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 6 ~~~~~~~~~~-------~~v~~~~~~~~-----~~~~e~~~~v~~vl~~lgL~~~-~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
.|+..|+.|| .+|.+.+.... ..+.+..++++++++.+||.+. .|..+++ |||||||||+||
T Consensus 91 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-----LSgGq~qRv~lA 165 (262)
T 1b0u_A 91 LRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH-----LSGGQQQRVSIA 165 (262)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGG-----SCHHHHHHHHHH
T ss_pred HhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCccc-----CCHHHHHHHHHH
Confidence 4566777666 36666665421 1123345678999999999998 8988866 999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
++|+.+|+||+|||||||||+.++..+++.|+++++. |+|+|++.|.+ ..+.+.+|+|++|.+|++++.|++++.
T Consensus 166 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 240 (262)
T 1b0u_A 166 RALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQV 240 (262)
T ss_dssp HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999764 88999887754 456678999999999999999987644
No 76
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.84 E-value=2.5e-21 Score=219.95 Aligned_cols=133 Identities=17% Similarity=0.237 Sum_probs=112.5
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+.... ..+.+..++++++++.+||++..|..+++ |||||||||+|||||+.+|+||+||||
T Consensus 91 l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~-----LSGGq~QRValArAL~~~P~lLLLDEP 165 (359)
T 3fvq_A 91 LFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHE-----LSGGQQQRAALARALAPDPELILLDEP 165 (359)
T ss_dssp CCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 344567777665321 22445567899999999999999998866 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+.++.++++.|+++.+..|.|+|+..|. ..++.+++|||++|++|+++..|++++..
T Consensus 166 ts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd-~~ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 166 FSALDEQLRRQIREDMIAALRANGKSAVFVSHD-REEALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCC-HHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 999999999999999988876678999987664 45788999999999999999999986653
No 77
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.84 E-value=1.9e-21 Score=214.28 Aligned_cols=138 Identities=19% Similarity=0.232 Sum_probs=112.8
Q ss_pred hhhhcCCCCC-------ccHHHHHHHhhh--ccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHh
Q 001048 6 LEKLAGIFPD-------PDVDAYMKAISA--EGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIV 76 (1174)
Q Consensus 6 ~~~~~~~~~~-------~~v~~~~~~~~~--~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv 76 (1174)
.++..|+.+| .+|.+.+..... ...+..++++++++.+||.+..|..+++ |||||||||+||++|+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 83 LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRV-----LSGGEQQRVQLARVLA 157 (266)
T ss_dssp HHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGG-----CCHHHHHHHHHHHHHH
T ss_pred HhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCccc-----CCHHHHHHHHHHHHHh
Confidence 3455565555 456666653221 2334456789999999999999998865 9999999999999999
Q ss_pred c------CCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 77 G------PTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 77 ~------~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
. +|++|+|||||||||+.++..+++.|+++++..++|+|++.|. ...+.+.+|+|++|.+|++++.|++++.
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd-l~~~~~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD-LNLAALYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC-HHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC-HHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9 9999999999999999999999999999987666788887664 3456678999999999999999997643
No 78
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.84 E-value=3.5e-21 Score=208.68 Aligned_cols=135 Identities=19% Similarity=0.200 Sum_probs=110.4
Q ss_pred hhhcCCCCC-------ccHHHHHHHhh-------hccchhhhHHHHHHHHhCCccc-ccccccCCCcccCCccccchhHH
Q 001048 7 EKLAGIFPD-------PDVDAYMKAIS-------AEGLENSLQTDYILKILGLDIC-ADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 7 ~~~~~~~~~-------~~v~~~~~~~~-------~~~~e~~~~v~~vl~~lgL~~~-~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
|+..|+.|| .+|.+.+.... ..+.+..++++++++.+||.+. .|..+++ |||||||||+|
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~QRv~i 156 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ-----LSGGQQQRVAI 156 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGG-----SCHHHHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhh-----CCHHHHHHHHH
Confidence 345777666 35666554311 1234445678899999999885 4877755 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
|++|+.+|+||+|||||||||+.++..+++.|+++++..|+|+|++.|.+. +.+.+|+|++|.+|++++.|+.++
T Consensus 157 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 157 ARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999998666899999888764 568999999999999999998654
No 79
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.84 E-value=5.3e-21 Score=210.31 Aligned_cols=110 Identities=24% Similarity=0.287 Sum_probs=100.2
Q ss_pred hhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 32 NSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 32 ~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
..++++++++.+||++..|..+++ |||||||||+||++|+.+|+||+|||||||||+.++..+++.|+++++. |
T Consensus 130 ~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g 203 (257)
T 1g6h_A 130 MVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-G 203 (257)
T ss_dssp HHHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHcCCchhhCCCchh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-C
Confidence 345789999999999999998866 9999999999999999999999999999999999999999999999764 8
Q ss_pred CEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 112 ATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
+|+|++.|.+. ++.+.+|+|++|.+|++++.|++++
T Consensus 204 ~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 204 ITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp CEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHH
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEECCEEEEEeCHHH
Confidence 89999887664 5678899999999999999998765
No 80
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.84 E-value=6.9e-21 Score=204.94 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=109.0
Q ss_pred hhcCCCCC-------ccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHh
Q 001048 8 KLAGIFPD-------PDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIV 76 (1174)
Q Consensus 8 ~~~~~~~~-------~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv 76 (1174)
+..|+.|| .++.+.+.... ..+.+..++++++++.+||.+..|..+++ |||||||||+||++|+
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~laral~ 156 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYE-----LSGGEQQRVAIARALA 156 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGG-----SCHHHHHHHHHHHHTT
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHHH
Confidence 55666665 45666654321 11233456789999999999999998866 9999999999999999
Q ss_pred cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCc
Q 001048 77 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPL 146 (1174)
Q Consensus 77 ~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~ 146 (1174)
.+|++|+|||||+|||+.++..+++.|+++++. |+|+|++.|.+. . .+.+|++++|.+|+++++|+.
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~-~-~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERE-L-AELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH-H-HTTSSEEEEEETTEEEEEEEC
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHH-H-HHhCCEEEEEECCEEEEEeee
Confidence 999999999999999999999999999999865 899999888754 3 489999999999999999963
No 81
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.84 E-value=4.3e-21 Score=219.51 Aligned_cols=134 Identities=19% Similarity=0.268 Sum_probs=113.9
Q ss_pred CCCCCccHHHHHHHh----hhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeC
Q 001048 11 GIFPDPDVDAYMKAI----SAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDE 86 (1174)
Q Consensus 11 ~~~~~~~v~~~~~~~----~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDE 86 (1174)
.+.|+.+|.+.+... ...+.+.+++++++++.+||++..|..+++ |||||||||+|||||+.+|+||+|||
T Consensus 85 ~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~-----LSGGqrQRVaiArAL~~~P~lLLLDE 159 (381)
T 3rlf_A 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDE 159 (381)
T ss_dssp CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGG-----SCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhH-----CCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 345666777665432 223455567899999999999999998865 99999999999999999999999999
Q ss_pred CCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 87 ISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 87 PTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
||||||+.++.++++.|+++.+..|.|+|+..| -..++.+++|||++|.+|+++..|++++..
T Consensus 160 Pts~LD~~~~~~l~~~l~~l~~~~g~tii~vTH-d~~ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS-CHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEEC-CHHHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 999999999999999999998766899998765 445788999999999999999999986553
No 82
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.83 E-value=7.8e-21 Score=216.20 Aligned_cols=133 Identities=17% Similarity=0.281 Sum_probs=112.5
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+.... ..+.+.+++++++++.+||++..|..+++ |||||||||+|||+|+.+|+||+||||
T Consensus 98 l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP 172 (355)
T 1z47_A 98 LFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHE-----LSGGQQQRVALARALAPRPQVLLFDEP 172 (355)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 455567777665321 12344566899999999999999998865 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+.++..+++.|+++.+..|.|+|++.|. ..++.+++|+|++|.+|+++..|++++..
T Consensus 173 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 173 FAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD-QEEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp TCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC-HHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999987668899987765 35677899999999999999999987653
No 83
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.83 E-value=5.4e-21 Score=213.85 Aligned_cols=141 Identities=19% Similarity=0.273 Sum_probs=111.7
Q ss_pred cchhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCcc-------cccccccCCCcccCCccccchhH
Q 001048 4 IKLEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLDI-------CADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 4 ~~~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~-------~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
.+.|+..|++||. +|.+.+...... ...+++++.++..+|.+ ..||.+|+ .+..|||||||||+
T Consensus 124 ~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~--~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSGGqrQRva 200 (306)
T 3nh6_A 124 ASLRSHIGVVPQDTVLFNDTIADNIRYGRVT--AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSGGEKQRVA 200 (306)
T ss_dssp HHHHHTEEEECSSCCCCSEEHHHHHHTTSTT--CCHHHHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCHHHHHHHH
T ss_pred HHHhcceEEEecCCccCcccHHHHHHhhccc--CCHHHHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCHHHHHHHH
Confidence 3467788888884 455665432211 12335677888888765 45788886 34459999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+.+|+||+|||||||||+.++..|++.|+++.+ ++|+|+..| +.+++..+|+|++|.+|+++++|++++..
T Consensus 201 iARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH--~l~~~~~aD~i~vl~~G~iv~~G~~~el~ 276 (306)
T 3nh6_A 201 IARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAH--RLSTVVNADQILVIKDGCIVERGRHEALL 276 (306)
T ss_dssp HHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECC--SHHHHHTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEc--ChHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999863 678887654 56667779999999999999999987665
Q ss_pred H
Q 001048 151 K 151 (1174)
Q Consensus 151 ~ 151 (1174)
.
T Consensus 277 ~ 277 (306)
T 3nh6_A 277 S 277 (306)
T ss_dssp H
T ss_pred h
Confidence 4
No 84
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.83 E-value=7.8e-21 Score=217.12 Aligned_cols=133 Identities=20% Similarity=0.261 Sum_probs=112.8
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+.... ..+.+..++++++++.+||++..|..+++ |||||||||+|||+|+.+|+||+||||
T Consensus 93 l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~-----LSGGq~QRvalAraL~~~P~lLLLDEP 167 (353)
T 1oxx_K 93 LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE-----LSGAQQQRVALARALVKDPSLLLLDEP 167 (353)
T ss_dssp CCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 445567877775422 12344456899999999999999998865 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+.++..+++.|+++.+..|.|+|++.|.+ .++.+++|+|++|.+|+++..|++++..
T Consensus 168 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 168 FSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp TTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999766688999887754 5678899999999999999999986653
No 85
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.83 E-value=6.6e-22 Score=204.79 Aligned_cols=147 Identities=18% Similarity=0.146 Sum_probs=97.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFARISGYCEQNDIHSPNITVEESIVFSAWLRLST 690 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~ 690 (1174)
.++|+||||||||||+++|+|... |.++|.+.... ..++.+||++|+. ++.+++ + + +..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~--~~~- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-S--SKF- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-E--ETT-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-H--hhc-
Confidence 589999999999999999999764 22333322111 2345689999975 222332 1 0 000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHH-----hhcCCcEEEEeC--CCCCCCHHHHHH
Q 001048 691 QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAT 763 (1174)
Q Consensus 691 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~a-----l~~~p~illlDE--PtsgLD~~~~~~ 763 (1174)
. .-.+..+... ..||||||||++||++ |+.+|++++||| ||++||+.....
T Consensus 64 -~----------------~~~~~~~~~~-----~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 64 -F----------------TSKKLVGSYG-----VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp -C----------------CCSSEETTEE-----ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred -C----------------Cccccccccc-----cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 0 0001222222 3699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecC--CCHHHHHHhcceeEEecCcEEEEE
Q 001048 764 VMRAVKNVVETGRTVVCTIHQ--PSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 764 i~~~l~~l~~~g~tvi~~~H~--~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
+.+.+++ .+.|+|+++|+ ....+...+|+ .+|++++.
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r-----~~~~i~~~ 160 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL-----PGAVLIEL 160 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC-----TTCEEEEC
T ss_pred HHHHHhc---CCCeEEEEEccCCCchHHHHHHhc-----CCcEEEEe
Confidence 9888865 47789999972 12233344454 45777763
No 86
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.83 E-value=8.3e-21 Score=216.86 Aligned_cols=133 Identities=21% Similarity=0.271 Sum_probs=112.0
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+.... ..+.+..++++++++.+||++..|..+++ |||||||||+|||+|+.+|+||+||||
T Consensus 86 l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP 160 (362)
T 2it1_A 86 LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ-----LSGGQQQRVAIARALVKEPEVLLLDEP 160 (362)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESG
T ss_pred cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 345557777665321 22344556899999999999999988865 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+.++..+++.|+++.+..|.|+|++.|.. .++.+++|+|++|.+|+++..|++++..
T Consensus 161 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 161 LSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999766688999877654 5778899999999999999999886543
No 87
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.83 E-value=9.3e-21 Score=216.17 Aligned_cols=133 Identities=20% Similarity=0.243 Sum_probs=112.2
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+.... ..+.+.+++++++++.+||++..|..+++ |||||||||+|||+|+.+|++|+||||
T Consensus 86 l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~-----LSgGq~QRvalArAL~~~P~lLLLDEP 160 (359)
T 2yyz_A 86 LYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQ-----LSGGQQQRVALARALVKQPKVLLFDEP 160 (359)
T ss_dssp CCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 344457777776422 12344456899999999999999998865 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+.++..+++.|+++.+..|.|+|++.|.. .++.+++|+|++|++|+++..|++++..
T Consensus 161 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 161 LSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999766688999887754 5677899999999999999999986543
No 88
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.83 E-value=1.2e-20 Score=206.54 Aligned_cols=139 Identities=22% Similarity=0.260 Sum_probs=112.8
Q ss_pred hhhhcCCCCC-------ccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHH
Q 001048 6 LEKLAGIFPD-------PDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGEL 74 (1174)
Q Consensus 6 ~~~~~~~~~~-------~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~a 74 (1174)
.|+..|++|| .++.+.+.... ....+..++++++++.+||.+..|..+++ |||||||||+||++
T Consensus 86 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qRv~lAra 160 (256)
T 1vpl_A 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVST-----YSKGMVRKLLIARA 160 (256)
T ss_dssp HHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGG-----CCHHHHHHHHHHHH
T ss_pred HhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhh-----CCHHHHHHHHHHHH
Confidence 3455666666 36666665321 11223345789999999999999998866 99999999999999
Q ss_pred HhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 75 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 75 Lv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
|+.+|+||+|||||||||+.++..+++.|+++++ .|+|+|++.|.+ ..+.+.+|++++|.+|++++.|++++..+
T Consensus 161 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 161 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999975 588999887754 34566799999999999999998765543
No 89
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.83 E-value=1.2e-20 Score=216.73 Aligned_cols=132 Identities=21% Similarity=0.281 Sum_probs=111.6
Q ss_pred CCCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 12 IFPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 12 ~~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
+.|+.+|.+.+.... ..+.+..++++++++.+||++..|..+++ |||||||||+|||+|+.+|+||+||||
T Consensus 92 l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP 166 (372)
T 1g29_1 92 LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQVFLMDEP 166 (372)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEECT
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 345557776665321 22344556899999999999999998865 999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 88 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|||||+.++..+++.|+++.+..|.|+|+..|.. .++.+++|+|++|.+|+++..|++++.
T Consensus 167 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 167 LSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999766688999887754 567889999999999999999987654
No 90
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.83 E-value=1.5e-20 Score=213.84 Aligned_cols=131 Identities=19% Similarity=0.222 Sum_probs=109.6
Q ss_pred CCCccHHHHHHHhh-hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCc
Q 001048 13 FPDPDVDAYMKAIS-AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGL 91 (1174)
Q Consensus 13 ~~~~~v~~~~~~~~-~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGL 91 (1174)
.|+.+|.+.+.... ..+..+.++++++++.+||++..|..+++ |||||||||+|||+|+.+|++|+||||||||
T Consensus 84 ~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~-----LSgGq~QRvalAraL~~~P~lLLLDEP~s~L 158 (348)
T 3d31_A 84 FPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLT-----LSGGEQQRVALARALVTNPKILLLDEPLSAL 158 (348)
T ss_dssp CTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGG-----SCHHHHHHHHHHHHTTSCCSEEEEESSSTTS
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 44457777665321 11111126799999999999999998865 9999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 92 DSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 92 DS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|+.++..+++.|+++.+..|.|+|++.|.+ .++.+++|+|++|.+|+++..|++++.
T Consensus 159 D~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~ 215 (348)
T 3d31_A 159 DPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEI 215 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999876788999887754 567889999999999999999998654
No 91
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.83 E-value=1e-20 Score=209.03 Aligned_cols=139 Identities=19% Similarity=0.247 Sum_probs=113.8
Q ss_pred hhhhcCCCCCc--------cHHHHHHHhh---hccchhhhHHHHHHHHhCCc--ccccccccCCCcccCCccccchhHHH
Q 001048 6 LEKLAGIFPDP--------DVDAYMKAIS---AEGLENSLQTDYILKILGLD--ICADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 6 ~~~~~~~~~~~--------~v~~~~~~~~---~~~~e~~~~v~~vl~~lgL~--~~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
.|+..|+.||. ++.+.+.... ..+.+..++++++++.+||. +..|..+++ |||||||||+||
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~-----LSgGq~qRv~lA 150 (266)
T 2yz2_A 76 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFF-----LSGGEKRRVAIA 150 (266)
T ss_dssp HGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGG-----SCHHHHHHHHHH
T ss_pred hhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhh-----CCHHHHHHHHHH
Confidence 35566776663 4556665422 12233345789999999999 888988865 999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
++|+.+|+||+|||||||||+.++..+++.|+++++. |+|+|++.|.+. .+.+.+|++++|.+|++++.|++++...
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999765 889999888764 4567899999999999999998876543
No 92
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.82 E-value=1.6e-20 Score=215.21 Aligned_cols=131 Identities=19% Similarity=0.249 Sum_probs=109.8
Q ss_pred CCCccHHHHHHHhh----hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCC
Q 001048 13 FPDPDVDAYMKAIS----AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEIS 88 (1174)
Q Consensus 13 ~~~~~v~~~~~~~~----~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPT 88 (1174)
.|+.+|.+.+.... ..+.+..++++++++.+||++..|..+++ |||||||||+|||+|+.+|+||+|||||
T Consensus 95 ~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP~ 169 (372)
T 1v43_A 95 WPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDEPL 169 (372)
T ss_dssp --CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTT-----CCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 34456766665321 12344456799999999999999998866 9999999999999999999999999999
Q ss_pred CCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 89 NGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 89 SGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
||||+.++..+++.|+++.+..|.|+|++.|.. .++.+++|+|++|.+|+++..|++++.
T Consensus 170 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l 229 (372)
T 1v43_A 170 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEV 229 (372)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999876688999877653 567789999999999999999987654
No 93
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.82 E-value=5.4e-21 Score=212.07 Aligned_cols=136 Identities=21% Similarity=0.303 Sum_probs=111.0
Q ss_pred hhhhcCCCCCc---------cHHHHHHHhh--------hccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccch
Q 001048 6 LEKLAGIFPDP---------DVDAYMKAIS--------AEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKR 68 (1174)
Q Consensus 6 ~~~~~~~~~~~---------~v~~~~~~~~--------~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkR 68 (1174)
.|+..|+.||. +|.+.+.... ....+..++++++++.+||.+..|..+++ ||||||||
T Consensus 95 ~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGqkqR 169 (279)
T 2ihy_A 95 VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGY-----LSTGEKQR 169 (279)
T ss_dssp HHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHH
T ss_pred HcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHH
Confidence 34556766652 5666654311 01223345789999999999999998876 99999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEE--EEEecCCChhHHhhhhheeeecCCcEEEeCCc
Q 001048 69 LTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATA--LISLLQPAPETFDLFDDVILMAEGKIVYHGPL 146 (1174)
Q Consensus 69 vSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tv--I~sihQps~~i~~lfD~IivL~~G~vvy~G~~ 146 (1174)
|+||++|+.+|++|+|||||+|||+.++..+++.|+++++. |+|+ |++.|.+ .++.+.+|+|++|.+|++++.|++
T Consensus 170 v~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 247 (279)
T 2ihy_A 170 VMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQGAV 247 (279)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEEEH
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999765 7888 8877765 356688999999999999999986
Q ss_pred ch
Q 001048 147 SY 148 (1174)
Q Consensus 147 ~~ 148 (1174)
++
T Consensus 248 ~~ 249 (279)
T 2ihy_A 248 ED 249 (279)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 94
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.82 E-value=4.2e-24 Score=228.09 Aligned_cols=184 Identities=11% Similarity=0.026 Sum_probs=114.9
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
...+++| .++++||+++|+||||||||||+|+|+|..+ ...+.+.+.+.+.. ...++.++|++|++..++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhc
Confidence 3567888 6999999999999999999999999999765 22333333232211 12245679999988777777777
Q ss_pred HHHHHHHhhcc---CCCCCHHHHHHHHHHH------HHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 001048 678 ESIVFSAWLRL---STQIDSKTKAEFVNEV------LQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 678 e~l~~~~~~~~---~~~~~~~~~~~~~~~~------l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ill 748 (1174)
|++........ ....+.++.++++++. ++.+|+.+..+... +.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHH
Confidence 76532110000 0012233334444443 33333333333322 2355 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 001048 749 MDEPTSGL----DARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGG 803 (1174)
Q Consensus 749 lDEPtsgL----D~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 803 (1174)
|||||+|+ |+..+..+.+.++++.+ .|.|+|+++|+++ ++...+|+++++.+.|
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 99999998 78899999999999975 4899999999985 6778899999885544
No 95
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.82 E-value=1.6e-20 Score=204.31 Aligned_cols=135 Identities=18% Similarity=0.254 Sum_probs=110.7
Q ss_pred hhcCCCCC-------ccHHHHHHHhh---hccchhhhHHHHHHHHhC-CcccccccccCCCcccCCccccchhHHHHHHh
Q 001048 8 KLAGIFPD-------PDVDAYMKAIS---AEGLENSLQTDYILKILG-LDICADTMVGDPMRRGVSGGQKKRLTTGELIV 76 (1174)
Q Consensus 8 ~~~~~~~~-------~~v~~~~~~~~---~~~~e~~~~v~~vl~~lg-L~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv 76 (1174)
+..|+.|| .++.+.+.... ....+..++++++++.++ |.+..|..+++ |||||||||+||++|+
T Consensus 81 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~-----LSgGq~qrv~lAraL~ 155 (240)
T 1ji0_A 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALM 155 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSS-----SCHHHHHHHHHHHHHT
T ss_pred CCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhh-----CCHHHHHHHHHHHHHH
Confidence 34666666 36777765432 122333456889999995 99988888766 9999999999999999
Q ss_pred cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 77 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 77 ~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
.+|+||+|||||+|||+.++..+++.|+++++ .|+|+|++.|.+ .++.+.+|++++|.+|++++.|++++.
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 226 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999976 588999887754 356788999999999999999987543
No 96
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.81 E-value=3.2e-20 Score=203.14 Aligned_cols=128 Identities=17% Similarity=0.199 Sum_probs=106.2
Q ss_pred CCccHHHHHHHhhh--------ccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeee
Q 001048 14 PDPDVDAYMKAISA--------EGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMD 85 (1174)
Q Consensus 14 ~~~~v~~~~~~~~~--------~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LD 85 (1174)
++.++.+.+..... ...+..++++++++.+||.+..|..+++ |||||||||+||++|+.+|+||+||
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lAraL~~~p~lllLD 153 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLILIARAIASECKLILLD 153 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHHHHHHTTCSEEEES
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 34567676654321 1223345789999999999999988765 9999999999999999999999999
Q ss_pred CCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 86 EISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 86 EPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
|||||||+.++..+++.|+++++..|+|+|++.|.+ ..+.+.+|++++|.+|+ ++.|++++
T Consensus 154 EPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~ 214 (253)
T 2nq2_C 154 EPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRN 214 (253)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHH
Confidence 999999999999999999999765588999887754 35668899999999999 99998654
No 97
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.80 E-value=8.9e-20 Score=201.45 Aligned_cols=120 Identities=21% Similarity=0.204 Sum_probs=100.7
Q ss_pred hhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 33 SLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 33 ~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
.++++++++.+||. +..|..++. .|||||||||+||++|+.+|+||+|||||||||+.++..+++.|+++++ .|
T Consensus 140 ~~~~~~~l~~~gl~~~~~~~~~~~----~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g 214 (267)
T 2zu0_C 140 QDLMEEKIALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GK 214 (267)
T ss_dssp HHHHHHHHHHTTCCTTTTTSBTTT----TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SS
T ss_pred HHHHHHHHHHcCCChhHhcCCccc----CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Confidence 45789999999996 577877642 3999999999999999999999999999999999999999999999864 48
Q ss_pred CEEEEEecCCChhHHhh-hhheeeecCCcEEEeCCcchHHHHHhhCCCC
Q 001048 112 ATALISLLQPAPETFDL-FDDVILMAEGKIVYHGPLSYSCKFFEGCGFR 159 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~l-fD~IivL~~G~vvy~G~~~~~~~yf~~~G~~ 159 (1174)
+|+|++.|.+. .+... +|++++|.+|++++.|++++... .+..||.
T Consensus 215 ~tviivtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 215 RSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp CEEEEECSSGG-GGGTSCCSEEEEEETTEEEEEECTTHHHH-HHTTTCT
T ss_pred CEEEEEeeCHH-HHHhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcchh
Confidence 89999888754 34444 89999999999999999876543 3445443
No 98
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.80 E-value=4.7e-22 Score=219.91 Aligned_cols=147 Identities=14% Similarity=0.133 Sum_probs=97.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQID 693 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 693 (1174)
.++|+||||||||||+|+|+|... +.+|+|.++|+++.....++.++|++|++.+++.+||.||+.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 479999999999999999999876 5689999999887554556789999999999999999999998754321 111
Q ss_pred HHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001048 694 SKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVE 773 (1174)
Q Consensus 694 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 773 (1174)
. +.+.+.++ ....+... ..||||||||++|||+++. +++|||||.|||+.. .+.++++.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 12223322 22334443 2599999999999999886 999999999999987 456666665
Q ss_pred cCCEEEEEecCC
Q 001048 774 TGRTVVCTIHQP 785 (1174)
Q Consensus 774 ~g~tvi~~~H~~ 785 (1174)
. .++|+++|..
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999964
No 99
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.80 E-value=4.6e-20 Score=204.01 Aligned_cols=138 Identities=14% Similarity=0.192 Sum_probs=107.1
Q ss_pred hhhhcCCCCCc------cHHHHHHHhhhc--c-ch-----hhhHHHHHHHHh--CCcccccccccCCCcccCCccccchh
Q 001048 6 LEKLAGIFPDP------DVDAYMKAISAE--G-LE-----NSLQTDYILKIL--GLDICADTMVGDPMRRGVSGGQKKRL 69 (1174)
Q Consensus 6 ~~~~~~~~~~~------~v~~~~~~~~~~--~-~e-----~~~~v~~vl~~l--gL~~~~dT~VG~~~~rGLSGGqKkRv 69 (1174)
.|+..|++||. +|.+.+...... . .+ ....++++++.+ ||.+..+..+++ |||||||||
T Consensus 91 ~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~-----LSgGq~QRv 165 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ-----LSGGQRQAV 165 (271)
T ss_dssp HHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTT-----SCHHHHHHH
T ss_pred HhccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCC-----CCHHHHHHH
Confidence 45667777773 566666532111 1 11 112346677777 787777777655 999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
+|||+|+.+|+||+|||||||||+.++..+++.|+++++..|+|+|++.|.+. ..+.+|+|++|.+|++++.|++++.
T Consensus 166 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~G~i~~~g~~~~l 243 (271)
T 2ixe_A 166 ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKEGSVCEQGTHLQL 243 (271)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999986545889999887654 4456999999999999999987655
Q ss_pred H
Q 001048 150 C 150 (1174)
Q Consensus 150 ~ 150 (1174)
.
T Consensus 244 ~ 244 (271)
T 2ixe_A 244 M 244 (271)
T ss_dssp H
T ss_pred H
Confidence 3
No 100
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.80 E-value=5.8e-20 Score=200.28 Aligned_cols=135 Identities=19% Similarity=0.196 Sum_probs=110.1
Q ss_pred hhhhcCCCCC-------ccHHHHHHHhhhccchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcC
Q 001048 6 LEKLAGIFPD-------PDVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGP 78 (1174)
Q Consensus 6 ~~~~~~~~~~-------~~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~ 78 (1174)
.|+..|+.|| .++.+.+......... .++++++++.+||++..|..+++ |||||||||+||++|+.+
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTR-TELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTC-HHHHHHHHHHTTCGGGTTSBGGG-----CCHHHHHHHHHHHHHHHH
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhhccCCc-HHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHHcC
Confidence 4455666665 3566666532211111 45789999999999998888765 999999999999999999
Q ss_pred Cc-------EeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcch
Q 001048 79 TR-------ALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSY 148 (1174)
Q Consensus 79 P~-------IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~ 148 (1174)
|+ +|+|||||+|||+.++..+++.|+++++. |+|+|++.|.+ ..+.+.+|++++|.+|++++.|++++
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 219 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREE 219 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99 99999999999999999999999999764 88999887654 35568899999999999999998653
No 101
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.80 E-value=7.2e-20 Score=201.03 Aligned_cols=134 Identities=12% Similarity=0.024 Sum_probs=108.4
Q ss_pred hhhcC-CCCCc-----cHHHHHHHhhhccchhhhHHHHHHHHhCCc-ccccccccCCCcccCCccccchhHHHHHHhcCC
Q 001048 7 EKLAG-IFPDP-----DVDAYMKAISAEGLENSLQTDYILKILGLD-ICADTMVGDPMRRGVSGGQKKRLTTGELIVGPT 79 (1174)
Q Consensus 7 ~~~~~-~~~~~-----~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P 79 (1174)
|+..| ++||. ++.+.+.....-..+..++++++++.+||. +..|..+++ |||||||||+||++|+.+|
T Consensus 73 ~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----LSgGqkqRv~lAraL~~~p 147 (263)
T 2pjz_A 73 YIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYK-----LSAGQSVLVRTSLALASQP 147 (263)
T ss_dssp CTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGG-----SCHHHHHHHHHHHHHHTCC
T ss_pred hhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhh-----CCHHHHHHHHHHHHHHhCC
Confidence 45567 77764 566665532211122345789999999999 888888765 9999999999999999999
Q ss_pred cEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhh-heeeecCCcEEEeCCcchHH
Q 001048 80 RALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFD-DVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 80 ~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD-~IivL~~G~vvy~G~~~~~~ 150 (1174)
++|+|||||+|||+.++..+++.|+++++ |+|++.|.+ ..+.+.+| ++++|.+|++++.|++++..
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~L~~~~~----tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 148 EIVGLDEPFENVDAARRHVISRYIKEYGK----EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHSCS----EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHhcC----cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999998642 888877765 45667899 99999999999999876543
No 102
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.79 E-value=9.4e-20 Score=199.52 Aligned_cols=109 Identities=22% Similarity=0.248 Sum_probs=92.2
Q ss_pred hhHHHHHHHHhCC-cccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCC
Q 001048 33 SLQTDYILKILGL-DICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 111 (1174)
Q Consensus 33 ~~~v~~vl~~lgL-~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~ 111 (1174)
.++++++++.+|| .+..|..+++ +|||||||||+||++|+.+|+||+|||||||||+.++..+++.|+++++ .|
T Consensus 119 ~~~~~~~l~~~gl~~~~~~~~~~~----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g 193 (250)
T 2d2e_A 119 WTKVKKALELLDWDESYLSRYLNE----GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PN 193 (250)
T ss_dssp HHHHHHHHHHHTCCGGGGGSBTTC----C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TT
T ss_pred HHHHHHHHHHcCCChhHhcCCccc----CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cC
Confidence 4578999999999 5888887753 3999999999999999999999999999999999999999999999865 58
Q ss_pred CEEEEEecCCChhHHhh-hhheeeecCCcEEEeCCcc
Q 001048 112 ATALISLLQPAPETFDL-FDDVILMAEGKIVYHGPLS 147 (1174)
Q Consensus 112 ~tvI~sihQps~~i~~l-fD~IivL~~G~vvy~G~~~ 147 (1174)
+|+|++.|.+. .+... +|++++|.+|++++.|+++
T Consensus 194 ~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 194 FGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp CEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHH
T ss_pred CEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHH
Confidence 89999888754 44455 5999999999999999875
No 103
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.79 E-value=2.8e-21 Score=216.83 Aligned_cols=154 Identities=15% Similarity=0.143 Sum_probs=120.5
Q ss_pred cccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------cc--cceEEEEccCCC-CC
Q 001048 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-------TF--ARISGYCEQNDI-HS 671 (1174)
Q Consensus 602 L~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~Q~~~-~~ 671 (1174)
++++|+++++|++++|+||||||||||++.|+|... +.+|+|.++|.+.... .+ ++.++|++|++. ++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 467899999999999999999999999999999866 3469999999876431 12 235899999988 88
Q ss_pred CCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCc--EEEE
Q 001048 672 PNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFM 749 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~--illl 749 (1174)
+.+|++||+.++... ..+ ..+++.+|+.+..+..++ +|| |||++|||+|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~----~~d--------~~lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEE----GYD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHT----TCS--------EEEECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHc----CCc--------chHHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEEE
Confidence 889999999886421 110 134566777766666553 599 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecC
Q 001048 750 DEPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQ 784 (1174)
Q Consensus 750 DEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~ 784 (1174)
| ||+|||+..+ ++++.+ .|.|+|++||.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKL 256 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECC
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCC
Confidence 9 9999999855 345543 48999999994
No 104
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.79 E-value=6.6e-20 Score=200.06 Aligned_cols=137 Identities=23% Similarity=0.341 Sum_probs=107.8
Q ss_pred hhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCcccccc-------cccCCCcccCCccccchhHHH
Q 001048 6 LEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLDICADT-------MVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 6 ~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~~~dT-------~VG~~~~rGLSGGqKkRvSIA 72 (1174)
.|+..|+.||. ++.+.+.... . ....++++++++.+||.+..+. .++. ..+.|||||||||+||
T Consensus 81 ~~~~i~~v~Q~~~l~~~tv~enl~~~~-~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSgGq~qRv~iA 157 (247)
T 2ff7_A 81 LRRQVGVVLQDNVLLNRSIIDNISLAN-P-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIA 157 (247)
T ss_dssp HHHHEEEECSSCCCTTSBHHHHHTTTC-T-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCST-TTTCCCHHHHHHHHHH
T ss_pred HHhcEEEEeCCCccccccHHHHHhccC-C-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhC-CCCCCCHHHHHHHHHH
Confidence 45667877773 5556554321 1 1223467889999999876543 3443 2456999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
++|+.+|+||+|||||||||+.++..+++.|+++. .|+|+|++.|.+. ..+.+|+|++|.+|++++.|++++.
T Consensus 158 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tviivtH~~~--~~~~~d~v~~l~~G~i~~~g~~~~l 230 (247)
T 2ff7_A 158 RALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKEL 230 (247)
T ss_dssp HHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSGG--GGTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999984 4889999888765 3456999999999999999987654
No 105
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.79 E-value=2e-23 Score=232.51 Aligned_cols=158 Identities=14% Similarity=0.163 Sum_probs=116.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
+.+|+|+|++|++||+++|+||||||||||+++|+|.. +|+| ++|++|++.++. .|++|
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I---------------~~~v~q~~~lf~-~ti~~ 171 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV---------------LSFANHKSHFWL-ASLAD 171 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE---------------ECGGGTTSGGGG-GGGTT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE---------------EEEecCcccccc-ccHHH
Confidence 46999999999999999999999999999999999976 3666 246778776654 58886
Q ss_pred -HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCC
Q 001048 679 -SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757 (1174)
Q Consensus 679 -~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD 757 (1174)
|+.+.. ..+. .+.+.++.+ |.+..| | ..|||||||| ||||+++|+||| ||+||
T Consensus 172 ~ni~~~~------~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD 225 (305)
T 2v9p_A 172 TRAALVD------DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNID 225 (305)
T ss_dssp CSCEEEE------EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSC
T ss_pred HhhccCc------cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCC
Confidence 776531 1111 234555553 444444 2 3699999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCccchhhhhhhhhC
Q 001048 758 ARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFECI 825 (1174)
Q Consensus 758 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~~~ 825 (1174)
+.++..+.. .+|+++ ..+.+|++ ++. +|++++.|++++ +..+|..+
T Consensus 226 ~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~-~G~iv~~g~~~e----l~~~y~~l 271 (305)
T 2v9p_A 226 VQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDE-SGEQPFNITDAD----WKSFFVRL 271 (305)
T ss_dssp STTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCHHH----HHHHHHHS
T ss_pred HHHHHHHHH--------------HhCCHH--HHHhCCEE-EEe-CCEEEEeCCHHH----HHHHHHHH
Confidence 999988862 188764 35678888 765 699999999743 34555554
No 106
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.78 E-value=1.2e-19 Score=223.38 Aligned_cols=141 Identities=21% Similarity=0.276 Sum_probs=114.0
Q ss_pred chhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCcc-------cccccccCCCcccCCccccchhHH
Q 001048 5 KLEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLDI-------CADTMVGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 5 ~~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~-------~~dT~VG~~~~rGLSGGqKkRvSI 71 (1174)
+.|+..|+.||+ ++.+.+...... ...+++++++++..||.+ ..||.+|+. +..||||||||++|
T Consensus 414 ~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~-~~~LSgGq~qrl~i 491 (582)
T 3b60_A 414 SLRNQVALVSQNVHLFNDTVANNIAYARTE-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN-GVLLSGGQRQRIAI 491 (582)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHHTTTTS-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-SCSSCHHHHHHHHH
T ss_pred HHHhhCeEEccCCcCCCCCHHHHHhccCCC-CCCHHHHHHHHHHcCCHHHHHhccccccccccCC-CCCCCHHHHHHHHH
Confidence 456778888874 566666532211 123456888999999875 468889873 45699999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
||+|+++|+||+|||||||||+.++..+++.|+++.+ |+|+|+..|++ ++.+.+|+|++|++|+++++|++++..+
T Consensus 492 Aral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~--~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 492 ARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCG--GGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccH--HHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999999863 88999887765 4567899999999999999999876543
No 107
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.78 E-value=2.2e-19 Score=197.45 Aligned_cols=138 Identities=21% Similarity=0.295 Sum_probs=107.3
Q ss_pred hhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCcc-------cccccccCCCcccCCccccchhHHH
Q 001048 6 LEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLDI-------CADTMVGDPMRRGVSGGQKKRLTTG 72 (1174)
Q Consensus 6 ~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~-------~~dT~VG~~~~rGLSGGqKkRvSIA 72 (1174)
.|+..|+.||. ++.+.+...... ...++++++++.+||.+ ..||.++. ....|||||||||+||
T Consensus 91 ~~~~i~~v~Q~~~l~~~tv~enl~~~~~~--~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSgGqkqRv~lA 167 (260)
T 2ghi_A 91 IRSIIGIVPQDTILFNETIKYNILYGKLD--ATDEEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSGGERQRIAIA 167 (260)
T ss_dssp HHTTEEEECSSCCCCSEEHHHHHHTTCTT--CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCHHHHHHHHHH
T ss_pred HhccEEEEcCCCcccccCHHHHHhccCCC--CCHHHHHHHHHHhCCHHHHHhccccccccccC-CcCcCCHHHHHHHHHH
Confidence 45667777763 566666532211 12235677788777654 35666664 3456999999999999
Q ss_pred HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 73 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
++|+.+|+||+|||||||||+.++..+++.|+++.+ ++|+|++.|.+.. .+.+|+|++|.+|++++.|++++..
T Consensus 168 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tviivtH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 168 RCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHRLST--ISSAESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp HHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEEECSSGGG--STTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHH--HHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999853 7899998887653 4569999999999999999876543
No 108
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.78 E-value=1.8e-19 Score=221.98 Aligned_cols=141 Identities=18% Similarity=0.277 Sum_probs=112.3
Q ss_pred cchhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCcc-------cccccccCCCcccCCccccchhH
Q 001048 4 IKLEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLDI-------CADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 4 ~~~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~-------~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
.+.|+..|+.||+ ++.+.+...... ...+++++++++..||.+ ..||.+|+. +..||||||||++
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~-~~~LSgGq~qr~~ 490 (582)
T 3b5x_A 413 TNLRRHFALVSQNVHLFNDTIANNIAYAAEG-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGEN-GTSLSGGQRQRVA 490 (582)
T ss_pred HHHhcCeEEEcCCCccccccHHHHHhccCCC-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCC-CCcCCHHHHHHHH
Confidence 3456778888884 344555432101 123456888999998875 457888873 4559999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||+|+++|+||+|||||||||+.++..+++.|+++.+ |+|+|+..|++ ++.+.+|+|++|++|++++.|++++..
T Consensus 491 iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~--~~~~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 491 IARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAHRL--STIEQADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCH--HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999853 78998877765 566789999999999999999987654
No 109
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.78 E-value=2e-19 Score=221.99 Aligned_cols=141 Identities=18% Similarity=0.251 Sum_probs=112.4
Q ss_pred chhhhcCCCCCc------cHHHHHHHhhhc-cchhhhHHHHHHHHhCCcc-------cccccccCCCcccCCccccchhH
Q 001048 5 KLEKLAGIFPDP------DVDAYMKAISAE-GLENSLQTDYILKILGLDI-------CADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 5 ~~~~~~~~~~~~------~v~~~~~~~~~~-~~e~~~~v~~vl~~lgL~~-------~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
+.|+..|+.||+ ++.+.+...... +...+++++++++..||.+ ..||.+|+. +..|||||||||+
T Consensus 415 ~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~-~~~LSgGq~qrv~ 493 (595)
T 2yl4_A 415 WLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEK-GVLLSGGQKQRIA 493 (595)
T ss_dssp HHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS-SCCCCHHHHHHHH
T ss_pred HHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCC-CCcCCHHHHHHHH
Confidence 456778888773 566666542211 1123456888999998754 468999873 4559999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||+|+++|+||+|||||||||+.++..+++.|+++.+ ++|+|+..|.+ ++.+.+|+|++|++|++++.|++++..
T Consensus 494 iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~--~~~~~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 494 IARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRL--STIKNANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp HHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCH--HHHHHSSEEEEEETTEEEEEECSCC--
T ss_pred HHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCH--HHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999864 78999877654 566789999999999999999987653
No 110
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.78 E-value=1.2e-19 Score=197.77 Aligned_cols=140 Identities=19% Similarity=0.241 Sum_probs=109.3
Q ss_pred chhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCccccccc-------ccCCCcccCCccccchhHH
Q 001048 5 KLEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLDICADTM-------VGDPMRRGVSGGQKKRLTT 71 (1174)
Q Consensus 5 ~~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~~~dT~-------VG~~~~rGLSGGqKkRvSI 71 (1174)
+.|+..|+.||. ++.+.+..... .....++++++++.+||.+..+.. ++. ....|||||||||+|
T Consensus 73 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSgGq~qrv~l 150 (243)
T 1mv5_A 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLE-GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE-RGVKISGGQRQRLAI 150 (243)
T ss_dssp CCTTTCCEECCSSCCCCEEHHHHTTSCTT-SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TSBCCCHHHHHHHHH
T ss_pred HHHhhEEEEcCCCccccccHHHHHhhhcc-CCCCHHHHHHHHHHhChHHHHHhCccchhchhcc-CcCcCCHHHHHHHHH
Confidence 345667887774 45555532211 112234688999999998876543 333 245699999999999
Q ss_pred HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 72 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|++|+.+|++|+|||||||||+.++..+++.|++++ .|+|+|++.|.+. ..+.+|+|++|.+|++++.|++++..
T Consensus 151 Aral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~--~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 151 ARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLS--TIVDADKIYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp HHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSHH--HHHHCSEEEEEETTEECCCSCHHHHH
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCChH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999986 3889999888754 44679999999999999999876543
No 111
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.78 E-value=2.5e-19 Score=220.22 Aligned_cols=141 Identities=23% Similarity=0.242 Sum_probs=109.9
Q ss_pred cchhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCc-------ccccccccCCCcccCCccccchhH
Q 001048 4 IKLEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLD-------ICADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 4 ~~~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~-------~~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
.+.|+..|++||+ ++.+.+..... ...++++.+.++..++. +..||.+|+ .+..||||||||++
T Consensus 413 ~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~ 489 (587)
T 3qf4_A 413 KDLRGHISAVPQETVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLS 489 (587)
T ss_dssp HHHHHHEEEECSSCCCCSEEHHHHHTTTCS--SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHH
T ss_pred HHHHhheEEECCCCcCcCccHHHHHhccCC--CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHH
Confidence 3457788888884 45555542211 11223455566665554 467889987 34459999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+++|+||+|||||||||+.++..+++.|+++. .|+|+|+..|.+ ++.+.+|+|++|++|+++++|++++..
T Consensus 490 lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l--~~~~~~d~i~vl~~G~i~~~g~~~el~ 565 (587)
T 3qf4_A 490 IARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKI--PTALLADKILVLHEGKVAGFGTHKELL 565 (587)
T ss_dssp HHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCH--HHHTTSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCh--HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999975 478999876654 567899999999999999999998765
Q ss_pred H
Q 001048 151 K 151 (1174)
Q Consensus 151 ~ 151 (1174)
+
T Consensus 566 ~ 566 (587)
T 3qf4_A 566 E 566 (587)
T ss_dssp H
T ss_pred h
Confidence 4
No 112
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.77 E-value=1.9e-18 Score=216.09 Aligned_cols=109 Identities=28% Similarity=0.433 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 001048 698 AEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAATVMRAVKNVVET 774 (1174)
Q Consensus 698 ~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 774 (1174)
.++++ .++.+||.+. .++.+. .|||||||||+||++|..+| ++|+|||||+|||+.....+.++|++|++.
T Consensus 357 ~~rl~-~L~~vGL~~l~l~r~~~-----tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~ 430 (842)
T 2vf7_A 357 VKRLD-VLLHLGLGYLGLDRSTP-----TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG 430 (842)
T ss_dssp HHHHH-HHHHTTCTTSBTTCBGG-----GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT
T ss_pred HHHHH-HHHhCCCCcCCccCCcC-----cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc
Confidence 34444 5778899765 566553 69999999999999999999 599999999999999999999999999888
Q ss_pred CCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCCCcc
Q 001048 775 GRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPLGQH 814 (1174)
Q Consensus 775 g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~~~ 814 (1174)
|.|||+++|++ ++.+.+|+++.|. ++|++++.|++++.
T Consensus 431 G~TVIvVeHdl--~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 431 GNSLFVVEHDL--DVIRRADWLVDVGPEAGEKGGEILYSGPPEGL 473 (842)
T ss_dssp TCEEEEECCCH--HHHTTCSEEEEECSSSGGGCCSEEEEECGGGG
T ss_pred CCEEEEEcCCH--HHHHhCCEEEEeCCCcccCCCEEEEecCHHHH
Confidence 99999999986 4667889999884 57999999998764
No 113
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.77 E-value=2.1e-19 Score=220.91 Aligned_cols=141 Identities=23% Similarity=0.261 Sum_probs=110.9
Q ss_pred cchhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCc-------ccccccccCCCcccCCccccchhH
Q 001048 4 IKLEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLD-------ICADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 4 ~~~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~-------~~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
.+.|+..|++||+ ++.+.+..-.. ...++++.+.++..++. +..||.+|+ .+..|||||||||+
T Consensus 411 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~ 487 (578)
T 4a82_A 411 GSLRNQIGLVQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLS 487 (578)
T ss_dssp HHHHHTEEEECSSCCCCSSBHHHHHGGGCS--SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHH
T ss_pred HHHhhheEEEeCCCccCcccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHH
Confidence 3457788888884 55565543211 12234566777777664 467899987 33459999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+++|+||+|||||||||+.++..+++.|+++. .++|+|+..|.++ +.+.+|+|++|++|+++++|++++..
T Consensus 488 lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~--~~~~~d~i~~l~~G~i~~~g~~~el~ 563 (578)
T 4a82_A 488 IARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLS--TITHADKIVVIENGHIVETGTHRELI 563 (578)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGG--GTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH--HHHcCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999885 3688888766554 56789999999999999999987665
Q ss_pred H
Q 001048 151 K 151 (1174)
Q Consensus 151 ~ 151 (1174)
+
T Consensus 564 ~ 564 (578)
T 4a82_A 564 A 564 (578)
T ss_dssp H
T ss_pred h
Confidence 3
No 114
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.77 E-value=3.9e-20 Score=210.61 Aligned_cols=131 Identities=21% Similarity=0.169 Sum_probs=104.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHH
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
.+++++|+.+++|++++|+||||||||||+|+|+|..++ .+|.|.++|.+.... ..++.+++++
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe-------------
Confidence 389999999999999999999999999999999998773 579999998642111 1222333332
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
+ |||+||++||+||..+|++|+|||||+.
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~--- 252 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS--- 252 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST---
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH---
Confidence 0 7999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 759 RAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
++.+.|+.+...+.|+|+|+|+++ ..+.+|+++.+.++
T Consensus 253 ----e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 253 ----EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp ----HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence 356777777654458999999976 57788999988753
No 115
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.77 E-value=8.2e-20 Score=210.71 Aligned_cols=139 Identities=18% Similarity=0.215 Sum_probs=109.7
Q ss_pred hhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCcccccccccC------CCcccCCccccchhHHHH
Q 001048 6 LEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLDICADTMVGD------PMRRGVSGGQKKRLTTGE 73 (1174)
Q Consensus 6 ~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~~~dT~VG~------~~~rGLSGGqKkRvSIA~ 73 (1174)
.|+..|+.+|. +|.+.+. .......++++++++.+||.+..+...+. +..+.|||||||||+|||
T Consensus 92 ~rr~ig~v~Q~~~lf~~tv~enl~---~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalAR 168 (390)
T 3gd7_A 92 WRKAFGVIPQKVFIFSGTFRKNLD---PNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLAR 168 (390)
T ss_dssp HHHTEEEESCCCCCCSEEHHHHHC---TTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHH
T ss_pred HhCCEEEEcCCcccCccCHHHHhh---hccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHH
Confidence 46777877773 4555543 12233455789999999998876655432 123349999999999999
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCK 151 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~ 151 (1174)
||+.+|+||+|||||||||+.++..+++.|+++. .++|+|++.|+. +...++|||++|++|++++.|++++...
T Consensus 169 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 169 SVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp HHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999864 467888877764 5667899999999999999999876543
No 116
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.77 E-value=5.7e-23 Score=220.84 Aligned_cols=178 Identities=8% Similarity=0.006 Sum_probs=111.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc----cccceEEEEccCCCCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQNDIHSPNI 674 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~Q~~~~~~~l 674 (1174)
..-|+||||++++|++++|+||||||||||+++|+|..+ |+|.+ |.+.... ..++.++|++|++..++.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 357999999999999999999999999999999999762 77888 6654221 1235678999986554433
Q ss_pred CH-HHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHH-----HHHhhcCCcEE
Q 001048 675 TV-EESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTI-----AVELVANPSII 747 (1174)
Q Consensus 675 Tv-~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~i-----a~al~~~p~il 747 (1174)
+. .+++.+. ..... ...+ .+.++++++...+ .... ..+|||||||++| +++++.+|+++
T Consensus 84 ~~~~~~l~~~-~~~~~~~g~~----~~~i~~~l~~~~~-----~il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 84 LKNEDFLEYD-NYANNFYGTL----KSEYDKAKEQNKI-----CLFE----MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp HHTTCEEEEE-EETTEEEEEE----HHHHHHHHHTTCE-----EEEE----ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred hhccchhhhh-hcccccCCCc----HHHHHHHHhCCCc-----EEEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 20 1111100 00000 0011 1235666664332 1221 2599999999999 89999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-------cCCEEEEEecCCCHHHHHHhccee
Q 001048 748 FMDEPTSGLDARAAATVMRAVKNVVE-------TGRTVVCTIHQPSIDIFEAFDDLV 797 (1174)
Q Consensus 748 llDEPtsgLD~~~~~~i~~~l~~l~~-------~g~tvi~~~H~~~~~~~~~~d~~~ 797 (1174)
+|||||+++|..+...+.+.|+++.+ .+.+.|+++|+++ +.+..+++++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii 205 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHH
Confidence 99999999999999999998887643 3456677777654 4555555544
No 117
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.77 E-value=2.1e-19 Score=221.65 Aligned_cols=141 Identities=21% Similarity=0.220 Sum_probs=110.5
Q ss_pred cchhhhcCCCCCc------cHHHHHHHhhhccchhhhHHHHHHHHhCCc-------ccccccccCCCcccCCccccchhH
Q 001048 4 IKLEKLAGIFPDP------DVDAYMKAISAEGLENSLQTDYILKILGLD-------ICADTMVGDPMRRGVSGGQKKRLT 70 (1174)
Q Consensus 4 ~~~~~~~~~~~~~------~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~-------~~~dT~VG~~~~rGLSGGqKkRvS 70 (1174)
.+.|+..|++||+ ++.+.+..... ...++++++.++..++. +..||.+|+ .+..|||||||||+
T Consensus 425 ~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qrv~ 501 (598)
T 3qf4_B 425 SSLRSSIGIVLQDTILFSTTVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQLLA 501 (598)
T ss_dssp HHHHHHEEEECTTCCCCSSBHHHHHHSSST--TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHHHH
T ss_pred HHHHhceEEEeCCCccccccHHHHHhcCCC--CCCHHHHHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHHHH
Confidence 3457788888884 45566643211 11223466677666654 356788876 23459999999999
Q ss_pred HHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 71 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 71 IA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||||+++|+||+|||||||||+.++..+++.|+++. .|+|+|+..|+++ +.+.+|+|++|++|+++++|++++..
T Consensus 502 iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 577 (598)
T 3qf4_B 502 ITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLN--TIKNADLIIVLRDGEIVEMGKHDELI 577 (598)
T ss_dssp HHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTT--HHHHCSEEEEECSSSEEECSCHHHHH
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH--HHHcCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999985 4889998877665 56779999999999999999987655
Q ss_pred H
Q 001048 151 K 151 (1174)
Q Consensus 151 ~ 151 (1174)
+
T Consensus 578 ~ 578 (598)
T 3qf4_B 578 Q 578 (598)
T ss_dssp H
T ss_pred h
Confidence 3
No 118
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.77 E-value=1.6e-20 Score=214.19 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=121.2
Q ss_pred ccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------cc--cceEEEEccCCC-CCC
Q 001048 603 SDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-------TF--ARISGYCEQNDI-HSP 672 (1174)
Q Consensus 603 ~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~Q~~~-~~~ 672 (1174)
+++|+++++|++++|+||||||||||++.|+|..+ +.+|+|.++|.+.... .+ ++.++|++|++. +.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46888999999999999999999999999999866 3469999999876431 11 345899999988 888
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCc--EEEEe
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMD 750 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~--illlD 750 (1174)
..|++||+.++... ..+ ..+++.+|+.+..+..++ +|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~----~~d--------~~lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEE----GYD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHT----TCS--------EEEEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhC----CCH--------HHHHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 89999999886421 111 124566777766666553 599 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecC
Q 001048 751 EPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIHQ 784 (1174)
Q Consensus 751 EPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~ 784 (1174)
||+|||+.++. +++.+ .|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999998653 44443 48999999994
No 119
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.75 E-value=2.5e-20 Score=219.31 Aligned_cols=175 Identities=17% Similarity=0.101 Sum_probs=137.2
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe---eCCc--------ccccceEEEEcc
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY---PKVQ--------HTFARISGYCEQ 666 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~--------~~~~~~~~~v~Q 666 (1174)
+..+|+++ +++.+||+++|+||||||||||+++|+|..+ +..|.|.++|+ +... ...++.++|++|
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 35799999 9999999999999999999999999999876 45899999998 3322 124567899999
Q ss_pred C-CCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCc
Q 001048 667 N-DIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPS 745 (1174)
Q Consensus 667 ~-~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~ 745 (1174)
+ +..++.+|+.+|+.+.+...... . +++ ....|. ...+|+|| |||+|| +.+|+
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~~~-------~---~~v------~~~ld~------l~~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFRDR-------G---QHV------LLIMDS------LTRYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTT-------T---CEE------EEEEEC------HHHHHHHH-HHHHHH---TTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhC-------C---CCH------HHHHHh------HHHHHHHH-HHHHHH---hCCCc
Confidence 5 55567889999998765432100 0 000 011122 23599999 999999 88998
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH---c-CC-----EEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 746 IIFMDEPTSGLDARAAATVMRAVKNVVE---T-GR-----TVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 746 illlDEPtsgLD~~~~~~i~~~l~~l~~---~-g~-----tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
+ |+|||+.+...+.++++++.+ + |+ ||++++||++ ...+|+++.+. +|+++..|++
T Consensus 275 ~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~-dG~Ivl~~~~ 339 (438)
T 2dpy_A 275 A------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAIL-DGHIVLSRRL 339 (438)
T ss_dssp C------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHS-SEEEEECHHH
T ss_pred c------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEe-CcEEEEeCCH
Confidence 8 999999999999999999866 3 64 9999999986 46678888887 5999998875
No 120
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.75 E-value=3.6e-18 Score=195.34 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHhh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcc
Q 001048 725 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDD 795 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 795 (1174)
.||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. + . .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 59999999999999999 8999999999999999999999999998863 799999994 4 2 6788
Q ss_pred eeEEecCcEEEEEcCCCc
Q 001048 796 LVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 796 ~~~l~~~G~~v~~G~~~~ 813 (1174)
++.+. +|+++..|++++
T Consensus 337 i~~l~-~G~i~~~g~~~~ 353 (359)
T 2o5v_A 337 TLRAQ-AGRFTPVADEEM 353 (359)
T ss_dssp EEEEE-TTEEEECCCTTT
T ss_pred EEEEE-CCEEEecCCHHH
Confidence 88876 599999999854
No 121
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.73 E-value=2.9e-17 Score=188.56 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=68.3
Q ss_pred CCCCCHHHHH------HHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcce
Q 001048 723 VNGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 723 ~~~LSgGqrq------Rv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+.+.|+++.++|.|||++||++ ++.+.+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEE
Confidence 3569999999 67888899999999999999999999999999999999877789999999985 567888998
Q ss_pred eEEe
Q 001048 797 VLMK 800 (1174)
Q Consensus 797 ~~l~ 800 (1174)
+.+.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 122
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.71 E-value=2.9e-18 Score=216.29 Aligned_cols=163 Identities=21% Similarity=0.351 Sum_probs=122.2
Q ss_pred HHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCC-C-H---HHHHHH
Q 001048 626 TTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQI-D-S---KTKAEF 700 (1174)
Q Consensus 626 STLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~-~-~---~~~~~~ 700 (1174)
+|...|..++.. +..|+|.++|+++.. +..+|+.|++.|...+...... . . ....+.
T Consensus 382 ~~C~~C~g~rl~--~~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (916)
T 3pih_A 382 RTCSVCGGRRLN--REALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEK 443 (916)
T ss_dssp EECTTTCSCCBC--TTGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHH
T ss_pred ccchhcccccCC--hHhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHH
Confidence 445555555665 447899999987532 2346888888875443222110 0 0 011123
Q ss_pred HHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhhcCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 001048 701 VNEVLQTIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAATVMRAVKNVVETGRT 777 (1174)
Q Consensus 701 ~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~--illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 777 (1174)
..+.+..+||.+. .|+.++ +|||||||||+|||+|+++|+ +|+|||||+|||+.....+++.|++++++|.|
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~-----~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~T 518 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSAT-----TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNT 518 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGG-----GCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCE
T ss_pred HHHHHHHcCCccccccCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCE
Confidence 4467778898764 455543 699999999999999999887 99999999999999999999999999888999
Q ss_pred EEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCCCc
Q 001048 778 VVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPLGQ 813 (1174)
Q Consensus 778 vi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~~ 813 (1174)
||+++|++ +....+|+++.|. ++|++++.|++++
T Consensus 519 vivVtHd~--~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e 557 (916)
T 3pih_A 519 VIVVEHDE--EVIRNADHIIDIGPGGGTNGGRVVFQGTVDE 557 (916)
T ss_dssp EEEECCCH--HHHHTCSEEEEEESSSGGGCSEEEEEECHHH
T ss_pred EEEEeCCH--HHHHhCCEEEEEcCCcccCCCEEEEeechhh
Confidence 99999985 5567789998882 5799999999865
No 123
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.71 E-value=6.7e-18 Score=183.10 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=94.5
Q ss_pred CccHHHHHHHhhhccchhhhHHHHHHHHhCCcc-------cccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCC
Q 001048 15 DPDVDAYMKAISAEGLENSLQTDYILKILGLDI-------CADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 87 (1174)
Q Consensus 15 ~~~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~-------~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEP 87 (1174)
..++.+.+........ +..+++++.+++.+ ..+|.++. ....|||||||||+||++|+.+|+||+||||
T Consensus 79 ~~tv~enl~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEP 154 (237)
T 2cbz_A 79 NDSLRENILFGCQLEE---PYYRSVIQACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDP 154 (237)
T ss_dssp SEEHHHHHHTTSCCCT---THHHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred CcCHHHHhhCccccCH---HHHHHHHHHHhhHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 3466666653221111 23445555555432 12344543 3456999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHH---HHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 88 SNGLDSSTTFQIVSFLK---HLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 88 TSGLDS~sa~~v~~~L~---~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|||||+.++..+++.|+ ++. .|+|+|++.|.+.. .+.+|++++|.+|++++.|++++.
T Consensus 155 ts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~--~~~~d~v~~l~~G~i~~~g~~~~~ 215 (237)
T 2cbz_A 155 LSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMSY--LPQVDVIIVMSGGKISEMGSYQEL 215 (237)
T ss_dssp TTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTT--GGGSSEEEEEETTEEEEEECHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChHH--HHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999995 333 37899999888764 357999999999999999987654
No 124
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.71 E-value=1e-17 Score=178.00 Aligned_cols=121 Identities=12% Similarity=0.202 Sum_probs=95.9
Q ss_pred hhhcCCCCC-------ccHHHHHHHhh-hc--cchhhhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHh
Q 001048 7 EKLAGIFPD-------PDVDAYMKAIS-AE--GLENSLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIV 76 (1174)
Q Consensus 7 ~~~~~~~~~-------~~v~~~~~~~~-~~--~~e~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv 76 (1174)
|+..|+.|| .++.+.+.... .. +.+ .++++++++.+||++. +..+++ |||||||||+||++|+
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~-~~~~~~~l~~~gl~~~-~~~~~~-----LSgGqkqrv~laraL~ 149 (214)
T 1sgw_A 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN-KNEIMDALESVEVLDL-KKKLGE-----LSQGTIRRVQLASTLL 149 (214)
T ss_dssp GGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC-HHHHHHHHHHTTCCCT-TSBGGG-----SCHHHHHHHHHHHHTT
T ss_pred cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchH-HHHHHHHHHHcCCCcC-CCChhh-----CCHHHHHHHHHHHHHH
Confidence 455566555 46666665321 11 222 4578999999999987 777654 9999999999999999
Q ss_pred cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeec
Q 001048 77 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMA 136 (1174)
Q Consensus 77 ~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~ 136 (1174)
.+|++|+|||||+|||+.++..+++.|+++++. |+|+|++.|.+. .+...+|+|++++
T Consensus 150 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL-SYCDVNENLHKYS 207 (214)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC-TTSSEEEEGGGGB
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEeC
Confidence 999999999999999999999999999998754 789999888765 4667788877653
No 125
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.71 E-value=1.5e-18 Score=195.90 Aligned_cols=185 Identities=14% Similarity=0.144 Sum_probs=116.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEE-EEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEG-DIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
..+|+++++.+++|++++|+||||||||||++.|+|... +.+| .|.+.+.+.......+.+..+.|+.. +++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhc
Confidence 468999999999999999999999999999999999654 2235 56543333222222222233333321 2333
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH-HHHHHHHHHhhcCCcEEEEeCCCC--
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS-- 754 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq-rqRv~ia~al~~~p~illlDEPts-- 754 (1174)
+++..+. + +.++..+.++++++..++. ..+. ...+|.+| +||+. |+++..+|+++++||||+
T Consensus 96 ~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 4444321 1 1122233344444322221 1111 12489998 66776 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHHc-CCEEEEEecCCC-H--------------------HHHHHhcceeEEecCcEE
Q 001048 755 -G---LDA-RAAATVMRAVKNVVET-GRTVVCTIHQPS-I--------------------DIFEAFDDLVLMKNGGRI 805 (1174)
Q Consensus 755 -g---LD~-~~~~~i~~~l~~l~~~-g~tvi~~~H~~~-~--------------------~~~~~~d~~~~l~~~G~~ 805 (1174)
+ +|. .....+.+.|++++++ |.|||+++|+.. . .+.+.+|++++|.+ |+.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~-~~~ 237 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER-NQQ 237 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEE-C--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEec-Ccc
Confidence 5 455 6678899999999865 999999999952 1 45667898888875 553
No 126
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.70 E-value=9.6e-20 Score=205.38 Aligned_cols=123 Identities=11% Similarity=0.076 Sum_probs=95.7
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhcc
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRL 688 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~ 688 (1174)
+++|+++||+||||||||||+++|+|..++ . +|. +.+++|+|++.+++. |++||+.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~--- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--W------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR--- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--S------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC---
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--c------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh---
Confidence 899999999999999999999999997653 1 221 357999999988887 99999864211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 689 STQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 689 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
.+.......+.+.++++.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||++.+|+
T Consensus 147 -~g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 147 -KGFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp -TTSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred -cCCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 11122223455677888887 44444444 26999999999999999999999999999999986
No 127
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.69 E-value=1.3e-17 Score=202.62 Aligned_cols=75 Identities=20% Similarity=0.293 Sum_probs=69.2
Q ss_pred CCC-CHHHHHHHHHHHHhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 724 NGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 724 ~~L-SgGqrqRv~ia~al~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||++||++ ++...+|+++++.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~--~~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLA--QIAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCH--HHHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHHhCCEEEEEe
Confidence 457 999999999999999999 99999999999999999999999999987 89999999986 5667799999986
Q ss_pred c
Q 001048 801 N 801 (1174)
Q Consensus 801 ~ 801 (1174)
+
T Consensus 472 ~ 472 (517)
T 4ad8_A 472 K 472 (517)
T ss_dssp C
T ss_pred c
Confidence 4
No 128
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.69 E-value=1.2e-17 Score=180.34 Aligned_cols=125 Identities=16% Similarity=0.202 Sum_probs=94.1
Q ss_pred cHHHHHHHhhhccchhhhHHHHHHHHhCCcccc-------cccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCC
Q 001048 17 DVDAYMKAISAEGLENSLQTDYILKILGLDICA-------DTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISN 89 (1174)
Q Consensus 17 ~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~~~-------dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTS 89 (1174)
++.+.+..... .. ...++++++.++|.+.. +|.++. ....|||||||||+||++|+.+|++|+||||||
T Consensus 84 tv~enl~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqrv~lAral~~~p~lllLDEPts 159 (229)
T 2pze_A 84 TIKENIIFGVS-YD--EYRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFG 159 (229)
T ss_dssp CHHHHHHTTSC-CC--HHHHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred CHHHHhhccCC-cC--hHHHHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 67776653211 11 12345566666665433 344543 235699999999999999999999999999999
Q ss_pred CcChHHHHHHHHH-HHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchH
Q 001048 90 GLDSSTTFQIVSF-LKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 90 GLDS~sa~~v~~~-L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~ 149 (1174)
|||+.++..+++. ++++. .++|+|++.|.+. ..+.+|++++|.+|++++.|++++.
T Consensus 160 ~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~--~~~~~d~v~~l~~G~i~~~g~~~~~ 216 (229)
T 2pze_A 160 YLDVLTEKEIFESCVCKLM--ANKTRILVTSKME--HLKKADKILILHEGSSYFYGTFSEL 216 (229)
T ss_dssp TSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHH--HHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChH--HHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999997 45553 3789999888753 3456999999999999999987654
No 129
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.68 E-value=1.1e-16 Score=199.96 Aligned_cols=135 Identities=24% Similarity=0.398 Sum_probs=108.9
Q ss_pred CCCCHHHHHHHHHhhccCCC---CCH---HHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhhcCC
Q 001048 672 PNITVEESIVFSAWLRLSTQ---IDS---KTKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELVANP 744 (1174)
Q Consensus 672 ~~lTv~e~l~~~~~~~~~~~---~~~---~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p 744 (1174)
..+||.|++.|...+.++.. +.. ++..+++ +.++.+||... .|+.++ +|||||||||+||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhCC
Confidence 46899999999766543210 000 2233444 35788999865 566654 69999999999999999985
Q ss_pred --cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCCCcc
Q 001048 745 --SIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPLGQH 814 (1174)
Q Consensus 745 --~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~~~ 814 (1174)
++|+|||||+|||+.....+++.|++|++.|.|||+++|++ +....+|++++|. ++|++++.|++++.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl--~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~ 598 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE--DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEV 598 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH--HHHHSCSEEEEECSSSGGGCCSEEEEECTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH--HHHHhCCEEEEeCCCccCCCCEEEEecCHHHH
Confidence 89999999999999999999999999988899999999986 4567889999983 58999999998764
No 130
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.68 E-value=1.9e-18 Score=189.25 Aligned_cols=165 Identities=10% Similarity=0.020 Sum_probs=103.0
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+++++|+|+||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 3568999999999999999999999999999999999854 222222 2356789999985 6678999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 756 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 756 (1174)
.|++.+....... ........+.+.+.++.+ .+..+..+ ..+|+||+||+++ ++++.+|+++++|||....
T Consensus 76 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 9998775322110 001111122334444433 23344443 3699999999988 6889999999999998888
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcc
Q 001048 757 DARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDD 795 (1174)
Q Consensus 757 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 795 (1174)
|.. +.++ .+.+|++++|+. ..+.+...+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~~-~~~~r~~~r 174 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDSD-VRLSRRVLR 174 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCHH-HHHHHHHHH
T ss_pred cHH--------HHHh--cCeEEEEECCHH-HHHHHHHHH
Confidence 764 2222 378999999962 234444443
No 131
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.67 E-value=3.2e-17 Score=207.90 Aligned_cols=150 Identities=17% Similarity=0.157 Sum_probs=109.4
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHH--------hCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVL--------SGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDI 669 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l--------~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~ 669 (1174)
++.+++|+++++++|++++|+||||||||||||++ .|..- |..+.. ++.+ +.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~v--pa~~~~---------------~~~~---d~ 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV--PCESAE---------------VSIV---DC 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCB--SEEEEE---------------EECC---SE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcc--cccccc---------------chHH---HH
Confidence 45799999999999999999999999999999999 44322 111110 0100 00
Q ss_pred CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHh--hcCCcEE
Q 001048 670 HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVEL--VANPSII 747 (1174)
Q Consensus 670 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al--~~~p~il 747 (1174)
++..+|+. |... +++|+|++++..+|+++ +++|+++
T Consensus 708 ----------------------------------i~~~ig~~---d~l~-----~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 708 ----------------------------------ILARVGAG---DSQL-----KGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp ----------------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred ----------------------------------HHHhcCch---hhHH-----HhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 01111111 1111 25888888888888888 9999999
Q ss_pred EEeCCCCCCCHHHHHHH-HHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 748 FMDEPTSGLDARAAATV-MRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 748 llDEPtsgLD~~~~~~i-~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
||||||+|+|+.....+ ...++.+++ .|.|+|++||+. ++.+.+|++..+.+ |++...++.+
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~~ 809 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTEE 809 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEETT
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecCC
Confidence 99999999999999888 667778876 499999999984 56788899888875 8999988764
No 132
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.66 E-value=4.6e-17 Score=181.15 Aligned_cols=125 Identities=17% Similarity=0.203 Sum_probs=93.3
Q ss_pred cHHHHHHHhhhccchhhhHHHHHHHHhCCcccc-------cccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCC
Q 001048 17 DVDAYMKAISAEGLENSLQTDYILKILGLDICA-------DTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISN 89 (1174)
Q Consensus 17 ~v~~~~~~~~~~~~e~~~~v~~vl~~lgL~~~~-------dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTS 89 (1174)
++.+.+. . .... ...++++++.++|.+.. +|.++. ....|||||||||+||++|+.+|++|+||||||
T Consensus 114 tv~enl~-~-~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts 188 (290)
T 2bbs_A 114 TIKENII-G-VSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFG 188 (290)
T ss_dssp BHHHHHH-T-TCCC--HHHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred cHHHHhh-C-cccc--hHHHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcc
Confidence 6777765 2 1111 12345566777765432 344543 234599999999999999999999999999999
Q ss_pred CcChHHHHHHHHHH-HHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcchHH
Q 001048 90 GLDSSTTFQIVSFL-KHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSC 150 (1174)
Q Consensus 90 GLDS~sa~~v~~~L-~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~ 150 (1174)
|||+.++..+++.+ +++. .|+|+|++.|.+ +..+.+|++++|.+|++++.|++++..
T Consensus 189 ~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~--~~~~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 189 YLDVLTEKEIFESCVCKLM--ANKTRILVTSKM--EHLKKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp TCCHHHHHHHHHHCCCCCT--TTSEEEEECCCH--HHHHHSSEEEEEETTEEEEEECHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhh--CCCEEEEEecCH--HHHHcCCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999974 5553 378999988875 344679999999999999999986653
No 133
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.65 E-value=1e-16 Score=195.03 Aligned_cols=156 Identities=16% Similarity=0.133 Sum_probs=114.7
Q ss_pred eeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHh
Q 001048 606 TGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAW 685 (1174)
Q Consensus 606 s~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~ 685 (1174)
++.+++|++++|+||||||||||+++++|...+ .|+ +.+.+++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 449999999999999999999999999996542 121 12456666531 12333321
Q ss_pred hccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHH-----H
Q 001048 686 LRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 760 (1174)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~-----~ 760 (1174)
+. ..+. ++ +...|+.+..+.. +..|||||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~--g~~~-------~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SW--GMDF-------EE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TT--SCCH-------HH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -Hc--CCCH-------HH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 11 1221 12 2234555444443 2469999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecCCC---------HHHHHHhcceeEEecCcE
Q 001048 761 AATVMRAVKNVVETGRTVVCTIHQPS---------IDIFEAFDDLVLMKNGGR 804 (1174)
Q Consensus 761 ~~~i~~~l~~l~~~g~tvi~~~H~~~---------~~~~~~~d~~~~l~~~G~ 804 (1174)
+..+.++++.+++.|.|+|+++|+.. ..+...+|++++|.+ |+
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~-ge 444 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY-VE 444 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE-EE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEE-EE
Confidence 99999999999888999999999971 245567888888864 55
No 134
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.65 E-value=9.4e-18 Score=191.62 Aligned_cols=176 Identities=15% Similarity=0.179 Sum_probs=124.1
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc----------ccccceEEEEccC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ----------HTFARISGYCEQN 667 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----------~~~~~~~~~v~Q~ 667 (1174)
+..+|+++ ++|.+||+++|+||||||||||+++|+|..+ +..|.|.+.|++..+ ..+++.+.++.|.
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 35799999 9999999999999999999999999999877 458999998865211 1134557788875
Q ss_pred CCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEE
Q 001048 668 DIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSII 747 (1174)
Q Consensus 668 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~il 747 (1174)
+. ...+.+..... .....+.....+ .|...-...+..||+|| ||+++| +.+|++
T Consensus 135 ~~-----~~~~r~~~~~~------------~~~~ae~~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~- 188 (347)
T 2obl_A 135 DR-----PALERMKAAFT------------ATTIAEYFRDQG----KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV- 188 (347)
T ss_dssp TS-----CHHHHHHHHHH------------HHHHHHHHHTTT----CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC-
T ss_pred CC-----CHHHHHHHHHH------------HHHHHHHHHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc-
Confidence 42 23333221100 000111111111 11110001124699999 899999 688887
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH--cCC-----EEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 001048 748 FMDEPTSGLDARAAATVMRAVKNVVE--TGR-----TVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 748 llDEPtsgLD~~~~~~i~~~l~~l~~--~g~-----tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 811 (1174)
|+|||+.....+.++++++.+ +|. ||++++|+.+ ...+|+++.+. +|+++..|++
T Consensus 189 -----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~-dG~Ivl~~~l 250 (347)
T 2obl_A 189 -----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSIL-DGHIVLTREL 250 (347)
T ss_dssp -----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHC-SEEEEBCHHH
T ss_pred -----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEee-CcEEEEeCCH
Confidence 999999999999999999874 477 9999999986 35678888887 5999998875
No 135
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.65 E-value=3.4e-19 Score=216.81 Aligned_cols=168 Identities=20% Similarity=0.184 Sum_probs=114.1
Q ss_pred ccccccccee-EEeCCeEEEEecCCCCCHHHHHHH--HhCCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCC
Q 001048 598 RLQLLSDITG-TFRPGILTALMGVSGAGKTTLMDV--LSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSP 672 (1174)
Q Consensus 598 ~~~iL~~vs~-~i~~Ge~~~l~G~sGsGKSTLl~~--l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~Q~~~~~~ 672 (1174)
+.++|+++|+ .+++||+++|+||||||||||+++ ++|..+ +.+|.|+++|++... ...++.+||++|++...+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~--~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE--FDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 4679999999 999999999999999999999999 688765 347999999987322 122345789998743211
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCC
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 752 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 752 (1174)
|+.+ .... . .. ...++++.+++.+..+... +.|||| +|++++||||
T Consensus 102 ------~l~~---~~~~-~-~~-----~~~~~l~~~~l~~~~~~~~-----~~LS~g-------------~~~~lilDe~ 147 (525)
T 1tf7_A 102 ------KLFI---LDAS-P-DP-----EGQEVVGGFDLSALIERIN-----YAIQKY-------------RARRVSIDSV 147 (525)
T ss_dssp ------SEEE---EECC-C-CS-----SCCSCCSSHHHHHHHHHHH-----HHHHHH-------------TCSEEEEECS
T ss_pred ------cEEE---EecC-c-cc-----chhhhhcccCHHHHHHHHH-----HHHHHc-------------CCCEEEECCH
Confidence 1100 0000 0 00 0001111222222222221 134554 5889999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHH--------HHHHhcceeEEec
Q 001048 753 TS-----GLDARAAATVMRAVKNVVETGRTVVCTIHQPSID--------IFEAFDDLVLMKN 801 (1174)
Q Consensus 753 ts-----gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~--------~~~~~d~~~~l~~ 801 (1174)
|+ +||+..+..+.++++++++.|+|||+++|+++.. ....+|++++|.+
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 98 4699999999999999988899999999998631 2344899998875
No 136
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.65 E-value=4.4e-17 Score=179.08 Aligned_cols=131 Identities=19% Similarity=0.262 Sum_probs=96.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeE-EEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII-EGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~-~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
++|+++| +++|++++|+||||||||||+++|+|..+ +. +|+|.++|.++. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~---------~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE---------YVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC---------SCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce---------eecCCccee-------
Confidence 5899999 99999999999999999999999999765 44 799999887642 223321100
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
.. . +.+++.. ..+ |++||++|..+|+++++|||| |+
T Consensus 75 -------v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~ 110 (261)
T 2eyu_A 75 -------VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DL 110 (261)
T ss_dssp -------EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SH
T ss_pred -------ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CH
Confidence 00 0 0122211 123 899999999999999999999 98
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 759 RAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
.+...+ ++. ++.|.+|++++|+.+ ....+|+++.+.
T Consensus 111 ~~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~ 146 (261)
T 2eyu_A 111 ETVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTS
T ss_pred HHHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhc
Confidence 886544 333 356999999999975 567788887774
No 137
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.65 E-value=2.5e-16 Score=156.82 Aligned_cols=76 Identities=22% Similarity=0.339 Sum_probs=68.8
Q ss_pred CCCCCHHHHHHHHHH------HHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcce
Q 001048 723 VNGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 723 ~~~LSgGqrqRv~ia------~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
+..||||||||++|| |+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 357999999999876 899999999999999999999999999999999877799999999986 456788998
Q ss_pred eEEe
Q 001048 797 VLMK 800 (1174)
Q Consensus 797 ~~l~ 800 (1174)
+++.
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8884
No 138
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.64 E-value=2.8e-17 Score=211.17 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=110.7
Q ss_pred cccccccceeEEeC-------CeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCC
Q 001048 598 RLQLLSDITGTFRP-------GILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIH 670 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~-------Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~ 670 (1174)
++.+++|+++.+++ |++++|+||||||||||||++ |... + .++..+||||+..
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~--~----------------~aqiG~~Vpq~~~- 827 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA--V----------------MAQMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--H----------------HHTTTCCEESSEE-
T ss_pred CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--H----------------HhheeEEeccCcC-
Confidence 35799999999987 999999999999999999999 8654 1 1122239999752
Q ss_pred CCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEe
Q 001048 671 SPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 750 (1174)
Q Consensus 671 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlD 750 (1174)
.+||.|++.. + +|+.+..+. +...+|+|+++ +++|++++++|+++|||
T Consensus 828 --~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 828 --RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVD 875 (1022)
T ss_dssp --EECCCSBEEE----E--------------------CC--------------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred --CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 4566655410 1 111111111 11247777664 99999999999999999
Q ss_pred CCCCCCCHHHH-HHHHHHHHHHHHc-CCEEEEEecCCCHHHHHH-hcceeEEecCcEEE--EEcCC
Q 001048 751 EPTSGLDARAA-ATVMRAVKNVVET-GRTVVCTIHQPSIDIFEA-FDDLVLMKNGGRII--YFGPL 811 (1174)
Q Consensus 751 EPtsgLD~~~~-~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~-~d~~~~l~~~G~~v--~~G~~ 811 (1174)
|||+|+|+... ..+++.|+.++++ |.++|++||++ ++... +|++.++ + |++. +.|++
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~--el~~~~~d~~~v~-~-g~~~~~~~~~~ 937 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH--SLVEDYSQNVAVR-L-GHMACMVENEC 937 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH--HHHHHTSSCSSEE-E-EEEEEC-----
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH--HHHHHhCCcceee-c-CeEEEEEecCc
Confidence 99999999985 5578899999876 99999999985 44544 5655554 3 7887 45554
No 139
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.64 E-value=1.9e-16 Score=198.59 Aligned_cols=135 Identities=21% Similarity=0.352 Sum_probs=106.3
Q ss_pred CCCCCHHHHHHHHHhhccCCCCC------HHHHHHHHHHHHHHcCCCCc-ccccccCCCCCCCCHHHHHHHHHHHHhhcC
Q 001048 671 SPNITVEESIVFSAWLRLSTQID------SKTKAEFVNEVLQTIELDGI-KDSLVGLPGVNGLSTEQRKRLTIAVELVAN 743 (1174)
Q Consensus 671 ~~~lTv~e~l~~~~~~~~~~~~~------~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~al~~~ 743 (1174)
+..+||.|++.|...+.++.... .++..+++ +.++.+||... .|+.++ +|||||||||+||++|..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~-----tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAA-----TLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGG-----GCCHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcc-----cCCHHHHHHHHHHHHHhhC
Confidence 45689999999854332211000 02233444 34788898764 566554 6999999999999999999
Q ss_pred --CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCCCc
Q 001048 744 --PSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK-----NGGRIIYFGPLGQ 813 (1174)
Q Consensus 744 --p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~v~~G~~~~ 813 (1174)
|++|+|||||+|||+.....+.+.|++|++.|.|||+|+|++ +....+|++++|. ++|++++.|++++
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl--~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e 614 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE--DTIEHADWIVDIGPGAGEHGGRIVHSGPYDE 614 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHHTCSEEEEECSSSGGGCCSCCEEECHHH
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH--HHHHhCCEEEEecCccccCCCEEEEeeCHHH
Confidence 489999999999999999999999999988899999999986 4567889999983 5799999999865
No 140
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.62 E-value=2.1e-17 Score=181.58 Aligned_cols=169 Identities=17% Similarity=0.175 Sum_probs=103.2
Q ss_pred ccccc-eeEEeCCeEEEEecCCCCCHHHHHHHHh--CCCCCCeEEEEEEECCeeCCcc--cccceEEEEccCCCCCCCCC
Q 001048 601 LLSDI-TGTFRPGILTALMGVSGAGKTTLMDVLS--GRKTGGIIEGDIRIGGYPKVQH--TFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 601 iL~~v-s~~i~~Ge~~~l~G~sGsGKSTLl~~l~--g~~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~Q~~~~~~~lT 675 (1174)
.|+++ .+.+++||+++|+||||||||||+++|+ |... +..|.+.+++...... ...+.+++++|+....+.++
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA 95 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE
Confidence 44444 2489999999999999999999999999 5522 1245666666442211 11233466666533333344
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
+.++....... .. .+. .... ...+.++..+...+..-..+|+++++||||++
T Consensus 96 ~~~~~~~~~~~----------~~---~~~----------~~~~-----~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ 147 (251)
T 2ehv_A 96 IVDGVSSVVGL----------PS---EEK----------FVLE-----DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSI 147 (251)
T ss_dssp EEC-----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHH
T ss_pred EEEcccccccc----------cc---ccc----------eecc-----CcccHHHHHHHHHHHHHhhCCCEEEEccHHHH
Confidence 43332211000 00 000 0000 11344555544444445689999999999999
Q ss_pred CC-----HHHHHHHHHHHHHHHHcCCEEEEEecCCCHHH---------HHHh-cceeEEe
Q 001048 756 LD-----ARAAATVMRAVKNVVETGRTVVCTIHQPSIDI---------FEAF-DDLVLMK 800 (1174)
Q Consensus 756 LD-----~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~---------~~~~-d~~~~l~ 800 (1174)
|| +..+..+.++++.++++|+|||+++|+++ +. ...+ |+++++.
T Consensus 148 ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 148 ALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 98 67777799999999878999999999976 33 4667 8888885
No 141
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.61 E-value=4.2e-17 Score=206.12 Aligned_cols=145 Identities=12% Similarity=0.120 Sum_probs=98.6
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
++.+++|+|+++++|++++|+||||||||||||++++.... ... |...... ...++.+ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-aq~------g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-AQI------GSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-HHH------TCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-hhc------Cccccch--hhhhhHH---HHHHHhCChH
Confidence 46799999999999999999999999999999999763210 000 1000000 0011111 1111111111
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCC
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD 757 (1174)
+++ +. +...+|+|++|++.|+++ +++|+++||||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 11 113589999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHH-cCCEEEEEecCCCHHHHHHhcce
Q 001048 758 ARAAATVM-RAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 758 ~~~~~~i~-~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
+.....+. ..++.+++ .|.|+|++||++ ++.+.+|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 99999987 77777865 599999999985 455666654
No 142
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.60 E-value=3.7e-17 Score=183.33 Aligned_cols=148 Identities=16% Similarity=0.111 Sum_probs=104.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc-------c--cceEEEEccCCCCCCCCCHHHHHH
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT-------F--ARISGYCEQNDIHSPNITVEESIV 681 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~-------~--~~~~~~v~Q~~~~~~~lTv~e~l~ 681 (1174)
+|++++|+||||||||||+++|+|..++ .+|+|.++|.+..... + ++.++|++|++...|..|++||+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 6999999999999999999999998763 4799999998764211 1 235799999988888899999998
Q ss_pred HHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHH
Q 001048 682 FSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 761 (1174)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~ 761 (1174)
++..-. .+ ..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~~~----~d--------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARG----YD--------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHT----CS--------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCC----CC--------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 653110 00 012222333222211 2456669999999999999994433 4444444
Q ss_pred HHHHHHHHHHHHc-CCEEEEEecCC
Q 001048 762 ATVMRAVKNVVET-GRTVVCTIHQP 785 (1174)
Q Consensus 762 ~~i~~~l~~l~~~-g~tvi~~~H~~ 785 (1174)
..+++.++++.+. |.|+|++||+.
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCc
Confidence 5566777777654 89999999974
No 143
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.60 E-value=8e-18 Score=189.45 Aligned_cols=157 Identities=13% Similarity=0.029 Sum_probs=86.3
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCC-CCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCC
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR-KTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNIT 675 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~-~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lT 675 (1174)
+++.+++|++|+| +|+||||+|||||++.|.|. .. +.+| +.++|.+.......+.+++++|++.....+|
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 3567999999998 99999999999999999996 44 4578 8888876533222345789999888878899
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCC
Q 001048 676 VEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 755 (1174)
Q Consensus 676 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 755 (1174)
+.|+..++..... .+.....++.+. +..+..+ +++|||||||+.+||+++ ++++||||++
T Consensus 80 v~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 80 VVDTPGYGDAINC-----RDCFKTIISYID------EQFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp EEEEC----------------CTTHHHHHH------HHHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred hhhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 9999887643210 000011111111 1123333 369999999999999885 9999999984
Q ss_pred -CCHHHHHHHHHHHHHHHHc-CCEEEEEecCCC
Q 001048 756 -LDARAAATVMRAVKNVVET-GRTVVCTIHQPS 786 (1174)
Q Consensus 756 -LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~ 786 (1174)
||+... +.++++.++ +.++|++.||+.
T Consensus 140 ~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 140 GLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 566666543 789999999864
No 144
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.59 E-value=2.6e-18 Score=183.70 Aligned_cols=145 Identities=16% Similarity=0.143 Sum_probs=111.0
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCC--CCCCHHHHHHHHHhh
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHS--PNITVEESIVFSAWL 686 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~--~~lTv~e~l~~~~~~ 686 (1174)
.++|++++|+||||||||||+++|+|... + .++|++|++.++ ..+|++++..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~--~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG--E-------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG--G-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC--C-------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 47899999999999999999999999754 1 368999987665 5679998865421
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHH----HHHHHHHHHhhcCCcEEEEeCCCCC-------
Q 001048 687 RLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 755 (1174)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq----rqRv~ia~al~~~p~illlDEPtsg------- 755 (1174)
..+ .....+.+.+.++.+++.+..+... ..+|+|| +||+++|++++.+|+++++||||++
T Consensus 60 ~~~----~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHP----DAFDLALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSG----GGBCHHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CCh----hhhhHHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111 1112344566777777765544432 3589996 4789999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HHcCCEEEEEecCC
Q 001048 756 LDARAAATVMRAVKNV-VETGRTVVCTIHQP 785 (1174)
Q Consensus 756 LD~~~~~~i~~~l~~l-~~~g~tvi~~~H~~ 785 (1174)
||+.....+.+.+++. .++|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999886 45699999999963
No 145
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.57 E-value=1.6e-15 Score=151.00 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=68.0
Q ss_pred cccCCccccchhHHH------HHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhh
Q 001048 58 RRGVSGGQKKRLTTG------ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDD 131 (1174)
Q Consensus 58 ~rGLSGGqKkRvSIA------~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~ 131 (1174)
...||||||||++|| ++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|+|++.|.+ +..+.+|+
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~--~~~~~~d~ 131 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDE--ELKDAADH 131 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCG--GGGGGCSE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChH--HHHHhCCE
Confidence 345999999999876 899999999999999999999999999999999865 478999888886 57789999
Q ss_pred eeeec
Q 001048 132 VILMA 136 (1174)
Q Consensus 132 IivL~ 136 (1174)
+++|.
T Consensus 132 ii~l~ 136 (148)
T 1f2t_B 132 VIRIS 136 (148)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99994
No 146
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.57 E-value=1.1e-16 Score=196.85 Aligned_cols=167 Identities=15% Similarity=0.178 Sum_probs=109.9
Q ss_pred eeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC------cccccceEEEEccCCCCCCCCCHHHH
Q 001048 606 TGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV------QHTFARISGYCEQNDIHSPNITVEES 679 (1174)
Q Consensus 606 s~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------~~~~~~~~~~v~Q~~~~~~~lTv~e~ 679 (1174)
+++++. +||+|||||||||||++|+|...+ +.+|.|+++|.++. ...+++.++|++|++.+++.+||+||
T Consensus 42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~ 117 (608)
T 3szr_A 42 DLALPA---IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKE 117 (608)
T ss_dssp SCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTT
T ss_pred cccCCe---EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHH
Confidence 355554 999999999999999999998652 25899999998742 12456789999999999999999999
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCC------C
Q 001048 680 IVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP------T 753 (1174)
Q Consensus 680 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP------t 753 (1174)
+.++...... .+ .++| ++++.++.+...+|+++++||| |
T Consensus 118 i~~~~~~~~~---------------------~~-----------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t 162 (608)
T 3szr_A 118 INKAQNAIAG---------------------EG-----------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAV 162 (608)
T ss_dssp HHHHHHHHHC---------------------SS-----------SCCC---SCCEEEEEEESSSCCEEEEECCC------
T ss_pred HHHHHHHhcC---------------------Cc-----------cccc---hHHHHHHhcCCCCCceeEeeCCCcccccc
Confidence 9875322100 00 0011 1222233344568999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHHHc--CCEEEEEecCCC------HHHHHHhc----ceeEEecCcEEEEEcCC
Q 001048 754 SGLDARAAATVMRAVKNVVET--GRTVVCTIHQPS------IDIFEAFD----DLVLMKNGGRIIYFGPL 811 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~------~~~~~~~d----~~~~l~~~G~~v~~G~~ 811 (1174)
+|||+..+..+.++++++.++ +.++++++|+.+ ..+.+..| +.+++...+.++..|+.
T Consensus 163 ~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~ 232 (608)
T 3szr_A 163 GNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTE 232 (608)
T ss_dssp CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccH
Confidence 999999999999999997543 678899999876 22333332 33344344667766664
No 147
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.57 E-value=3.2e-16 Score=195.48 Aligned_cols=133 Identities=19% Similarity=0.145 Sum_probs=97.7
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
++.+++|+|++ |++++|+||||||||||||+|+|.... +..|.+ .. ..+..+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~------vp--a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSF------VP--AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCC------BS--SSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCce------ee--hhccceeeHHH---hhccCCHH
Confidence 35799999999 999999999999999999999995320 112322 11 11234677766 44555655
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHh--hcCCcEEEEeCC---
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVEL--VANPSIIFMDEP--- 752 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al--~~~p~illlDEP--- 752 (1174)
||+. .++|+|+++++.+++++ +++|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 5431 13799999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHHcCCEEEEEecCCCHHHHHH
Q 001048 753 TSGLDARAA-ATVMRAVKNVVETGRTVVCTIHQPSIDIFEA 792 (1174)
Q Consensus 753 tsgLD~~~~-~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~ 792 (1174)
|++||..+. ..+.+.|++ .|.|+|++||+. ++.+.
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~ 703 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTAL 703 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTC
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHh
Confidence 999999875 567777765 589999999974 44443
No 148
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.57 E-value=1.6e-16 Score=172.10 Aligned_cols=151 Identities=17% Similarity=0.127 Sum_probs=91.6
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCe-----EEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHH
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI-----IEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIV 681 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~-----~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~ 681 (1174)
+-+++||+++|+||||||||||+++|+|.....+ ..|.+.+++.+.. ..+.+++++|+..+.+. |+.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999432111 2346666654310 01122333333222221 2333221
Q ss_pred HHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH-HHHHHHHHHHhhc-------CCcEEEEeCCC
Q 001048 682 FSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 753 (1174)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG-qrqRv~ia~al~~-------~p~illlDEPt 753 (1174)
+. ...+++ +++++..+++++. +|+++++||||
T Consensus 96 ~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 10 012333 3333555555555 99999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHH-cCCEEEEEecCCCH---HHHHHhcceeEEec
Q 001048 754 SGLDAR-------A-----AATVMRAVKNVVE-TGRTVVCTIHQPSI---DIFEAFDDLVLMKN 801 (1174)
Q Consensus 754 sgLD~~-------~-----~~~i~~~l~~l~~-~g~tvi~~~H~~~~---~~~~~~d~~~~l~~ 801 (1174)
+++|+. . ...+++.|+++++ .|.|||+++|..+. .+...+|.++.+.+
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~ 199 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRK 199 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEE
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEe
Confidence 999984 2 2367788888765 49999999995431 25566788887765
No 149
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.55 E-value=1.2e-16 Score=183.30 Aligned_cols=166 Identities=20% Similarity=0.154 Sum_probs=101.8
Q ss_pred cccccc-eeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEE----EE-EEECCeeCCcccccceEEEEccCCCCCCC
Q 001048 600 QLLSDI-TGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE----GD-IRIGGYPKVQHTFARISGYCEQNDIHSPN 673 (1174)
Q Consensus 600 ~iL~~v-s~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~----G~-i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~ 673 (1174)
..|+++ ++.+++|++++|+||||||||||++.|++.....+.+ |+ |++++.+.. .++.+++++|...+.+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH
Confidence 445555 6899999999999999999999999999965211222 56 788775431 12334555555433222
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhh-------cCCcE
Q 001048 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELV-------ANPSI 746 (1174)
Q Consensus 674 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~-------~~p~i 746 (1174)
++.||+.+.. . .-|.+|+|++.++++++ .+|++
T Consensus 195 -~v~~ni~~~~------------------------------------~---~~~~~~~~~l~~~~~~~~~lS~G~~~~~l 234 (349)
T 1pzn_A 195 -EVLKHIYVAR------------------------------------A---FNSNHQMLLVQQAEDKIKELLNTDRPVKL 234 (349)
T ss_dssp -HHGGGEEEEE------------------------------------C---CSHHHHHHHHHHHHHHHHHSSSSSSCEEE
T ss_pred -HHhhCEEEEe------------------------------------c---CChHHHHHHHHHHHHHHHHhccccCCCCE
Confidence 3333322110 0 01456777777777777 68999
Q ss_pred EEEeCCCCCCCHHH------------HHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 747 IFMDEPTSGLDARA------------AATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 747 lllDEPtsgLD~~~------------~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
+++||||+++|+.. ...+++.|+++++ .|.|||+++|..+ +.-..+++..... +|+++.++.
T Consensus 235 lIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~~~ 309 (349)
T 1pzn_A 235 LIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAHSA 309 (349)
T ss_dssp EEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTTC
T ss_pred EEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceEeecC
Confidence 99999999999852 3566667777765 4899999999864 3333334444443 577666555
No 150
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.53 E-value=2.8e-15 Score=188.16 Aligned_cols=157 Identities=10% Similarity=0.033 Sum_probs=106.5
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
++.+++|+|++ ++|++++|+||||||||||||+|+|.... ++ .|..+.. ....++++.| ++..+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~----~q---~G~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM----AY---IGSYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH----HT---TTCCBSS--SEEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH----Hh---cCcccch--hcccceeHHH---HHhhCCHH
Confidence 35799999999 99999999999999999999999985310 00 1211111 1123455544 34455555
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCC
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 757 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD 757 (1174)
|++..+ ...+|+|+++ ++.+...+++|+++|||||++|+|
T Consensus 661 d~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCC
Confidence 544211 0135666654 455555789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 758 ARAAATV-MRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 758 ~~~~~~i-~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
+.....+ .+.++.+.+ .|.++|++||+++ +.+.+|++..+.+ |++.+...
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~~~~~ 752 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLDALEH 752 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEEEEEc
Confidence 9887775 778888887 4999999999864 4567787766654 77776544
No 151
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.51 E-value=4.8e-15 Score=169.66 Aligned_cols=127 Identities=21% Similarity=0.239 Sum_probs=85.2
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhc
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLR 687 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~ 687 (1174)
...+|++++|+|||||||||||++|+|..++ ...|.|...+.+.. ...+...+++.|.+.....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~-~~~~~i~t~ed~~e-~~~~~~~~~v~q~~~~~~~-------------- 182 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNN-TKYHHILTIEDPIE-FVHESKKCLVNQREVHRDT-------------- 182 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHH-HCCCEEEEEESSCC-SCCCCSSSEEEEEEBTTTB--------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccC-CCCcEEEEccCcHH-hhhhccccceeeeeecccc--------------
Confidence 6789999999999999999999999997652 11355543332221 1111222333332211111
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHH
Q 001048 688 LSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRA 767 (1174)
Q Consensus 688 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~ 767 (1174)
++-.+ +||++|..+|++|++|||| |..+.. .
T Consensus 183 --------------------------------------~~~~~----~La~aL~~~PdvillDEp~---d~e~~~----~ 213 (356)
T 3jvv_A 183 --------------------------------------LGFSE----ALRSALREDPDIILVGEMR---DLETIR----L 213 (356)
T ss_dssp --------------------------------------SCHHH----HHHHHTTSCCSEEEESCCC---SHHHHH----H
T ss_pred --------------------------------------CCHHH----HHHHHhhhCcCEEecCCCC---CHHHHH----H
Confidence 12221 9999999999999999999 655543 4
Q ss_pred HHHHHHcCCEEEEEecCCCHHHHHHhcceeEEec
Q 001048 768 VKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKN 801 (1174)
Q Consensus 768 l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 801 (1174)
+.++++.|+||++|+|+.+ ..+.+|+++.+..
T Consensus 214 ~~~~~~~G~~vl~t~H~~~--~~~~~dRli~l~~ 245 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTS--AAKTIDRVVDVFP 245 (356)
T ss_dssp HHHHHHTTCEEEEEESCSS--HHHHHHHHHHTSC
T ss_pred HHHHHhcCCEEEEEEccCh--HHHHHHHHhhhcC
Confidence 4445667999999999986 3478899888753
No 152
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.51 E-value=2.1e-14 Score=160.25 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=102.6
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhc
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLR 687 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~ 687 (1174)
.+++|++++|+||||||||||++.+++... .|.+ +.|.+.. ....+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~---~~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGEL---PTGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCC---CCCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccC---CCccEEEEECCCCH---HHHHHHHH---HHH
Confidence 488999999999999999999999998443 2444 2344321 12346787765422 11212211 111
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCC--CCCHHHH---H
Q 001048 688 LSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARAA---A 762 (1174)
Q Consensus 688 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts--gLD~~~~---~ 762 (1174)
..... ...+++++.+++.+..+..+ ..||+||+|++ ++++.+|+++++||||+ ++|.... .
T Consensus 92 --~~~~~----~~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 --AHLSA----EERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp --TTSCH----HHHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --hhcCh----hhhhhccCceEEeecCCCCc-----ccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 11121 23456777887776655433 36999998875 68889999999999999 9998544 7
Q ss_pred HHHHHHHHHHH-cCCEEEEEecCCC
Q 001048 763 TVMRAVKNVVE-TGRTVVCTIHQPS 786 (1174)
Q Consensus 763 ~i~~~l~~l~~-~g~tvi~~~H~~~ 786 (1174)
.+++.|+++++ .|.|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 88888998864 5999999999854
No 153
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.51 E-value=9.5e-17 Score=167.39 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=101.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-HTFARISGYCEQNDIHSPNITVEESIVFSAWLRLST 690 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~ 690 (1174)
||+++|+||||||||||+++|+|..+ . +| |.++|.+... ...++.+||++|+. .. + ++++. .+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g--~-~~~l~---~~~--- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SG--T-RGPLS---RVG--- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEET--TS--C-EEEEE---ECC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEec--cc--c-eehhh---ccc---
Confidence 78999999999999999999999765 2 57 8888876533 23467789999974 11 1 11110 010
Q ss_pred CCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHH-HHHH---HhhcCCcEEEEeC--CCCCCCHHHHHH
Q 001048 691 QIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAT 763 (1174)
Q Consensus 691 ~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv-~ia~---al~~~p~illlDE--PtsgLD~~~~~~ 763 (1174)
++..+ ..+..+|..+ ..+|+|||+++ ++++ |+..+|++|++|| |+..+|......
T Consensus 66 -----------------~~~~~~~~~~~v~~~~-~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 66 -----------------LEPPPGKRECRVGQYV-VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp -----------------CCCCSSSCCEESSSSE-ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred -----------------ccCCccccccccceEE-EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 01111 0122444433 35999999988 4455 6899999999999 898899875554
Q ss_pred HHHHHHHHHHcCCEEEE----EecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 001048 764 VMRAVKNVVETGRTVVC----TIHQPSIDIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 764 i~~~l~~l~~~g~tvi~----~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
+.+++ ++..++|+ ++|+.+. ...|++..+ ++|+++.-.+
T Consensus 128 l~~~l----~~~~~~ilgti~vsh~~~~---~~vd~i~~~-~~~~i~~~~~ 170 (189)
T 2i3b_A 128 VRQTL----STPGTIILGTIPVPKGKPL---ALVEEIRNR-KDVKVFNVTK 170 (189)
T ss_dssp HHHHH----HCSSCCEEEECCCCCSSCC---TTHHHHHTT-CCSEEEECCS
T ss_pred HHHHH----hCCCcEEEEEeecCCCCch---HHHHHHeec-CCcEEEEeCh
Confidence 44444 44555553 2387542 344565555 4688887543
No 154
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.48 E-value=1.5e-14 Score=167.09 Aligned_cols=81 Identities=26% Similarity=0.388 Sum_probs=73.1
Q ss_pred ccCCccccchhHHHHHHh------cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhhe
Q 001048 59 RGVSGGQKKRLTTGELIV------GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDV 132 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~aLv------~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~I 132 (1174)
..|||||||||+||++|+ .+|++|+|||||+|||+.+...+++.|+++.+ .|+|+|+..|.+. ..+.+|++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHH--HHTTCSCE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEE
Confidence 459999999999999999 79999999999999999999999999999975 5889998878663 47889999
Q ss_pred eeecCCcEEE
Q 001048 133 ILMAEGKIVY 142 (1174)
Q Consensus 133 ivL~~G~vvy 142 (1174)
++|.+|+++.
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999875
No 155
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.48 E-value=2.1e-15 Score=175.77 Aligned_cols=152 Identities=14% Similarity=0.095 Sum_probs=91.5
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
++.+++|+||+| +|+||||||||||+|+|+|...+.+..|.+.+++.+ ....+.+++++|++.+.+.+||.
T Consensus 23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv~ 93 (418)
T 2qag_C 23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTIV 93 (418)
T ss_dssp TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCEEEEEECC------CEEEEEE
T ss_pred CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc---ceeeeeEEEEEecCCcccceeee
Confidence 467999999998 999999999999999999976421112222222211 11234579999988888889999
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCc---EEEEeCCC-
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPS---IIFMDEPT- 753 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~---illlDEPt- 753 (1174)
||+.++.... .... ...+.+.+ + ..++.+++||++|||+++.+|+ +|++||||
T Consensus 94 Dt~g~~~~~~------~~~~---~~~i~~~i------~--------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~ 150 (418)
T 2qag_C 94 DTPGFGDAVD------NSNC---WQPVIDYI------D--------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG 150 (418)
T ss_dssp ECC--------------------CHHHHHHH------H--------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C
T ss_pred echhhhhhcc------chhh---HHHHHHHH------H--------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc
Confidence 9988764321 0010 11122111 0 1266778899999999999999 99999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 754 SGLDARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 754 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
.|||+... +.++++.. +.++|+++|..+
T Consensus 151 ~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 151 HGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp CSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred cCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 69998873 44455543 788888888754
No 156
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.48 E-value=9.8e-16 Score=163.33 Aligned_cols=180 Identities=14% Similarity=0.124 Sum_probs=94.6
Q ss_pred EEEeceEEEEeeCCcccccccccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC---CCeEEEEEEECCe
Q 001048 574 VTFEDLRYYVDIPSAMRKNGFNQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIEGDIRIGGY 650 (1174)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~---~~~~~G~i~~~g~ 650 (1174)
++++|+++.+. ..++++ +.+++|+.++|+|+||||||||+|.|+|... ..+..|.+...+.
T Consensus 4 l~~~~~~~~~~--------------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMS--------------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEE--------------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheee--------------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 56777776442 257777 8899999999999999999999999999751 0144565543221
Q ss_pred eC-C-cccccceEEEEccCCCCCCCCC---HHHHHHHHHhh-cc--------CCCCCHHHHHHHHHHHHHHcCCCCc-cc
Q 001048 651 PK-V-QHTFARISGYCEQNDIHSPNIT---VEESIVFSAWL-RL--------STQIDSKTKAEFVNEVLQTIELDGI-KD 715 (1174)
Q Consensus 651 ~~-~-~~~~~~~~~~v~Q~~~~~~~lT---v~e~l~~~~~~-~~--------~~~~~~~~~~~~~~~~l~~l~l~~~-~~ 715 (1174)
-. . ........|+..+ ..+... .+..+...... +. ..........+.+.+.++..++... ..
T Consensus 68 ~~~~~~~~l~Dt~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 144 (210)
T 1pui_A 68 FEVADGKRLVDLPGYGYA---EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 144 (210)
T ss_dssp EEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEecCCEEEEECcCCccc---ccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 00 0 0000000011100 001000 11122211110 00 0000001122234455555565432 12
Q ss_pred ccccCCCCCCCCHHHHHH-HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 001048 716 SLVGLPGVNGLSTEQRKR-LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT 777 (1174)
Q Consensus 716 ~~~~~~~~~~LSgGqrqR-v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 777 (1174)
+++ ..+|+||||| +..+++++.+|+++++|||||++|.....++.+.|.++.++|.|
T Consensus 145 nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 145 TKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp ECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 222 2489999999 89999999999999999999999999999999999988765544
No 157
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.47 E-value=6.5e-15 Score=159.59 Aligned_cols=167 Identities=13% Similarity=0.145 Sum_probs=105.5
Q ss_pred cccccccee-EEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccc---eEEEEccCCCCCCCC
Q 001048 599 LQLLSDITG-TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR---ISGYCEQNDIHSPNI 674 (1174)
Q Consensus 599 ~~iL~~vs~-~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~---~~~~v~Q~~~~~~~l 674 (1174)
.+.|+++.+ .+++|++++|+||||||||||++.|++... +..|.+.+.+.+.......+ ..++.+|+...
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIE---- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBT----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhh----
Confidence 467888886 899999999999999999999999997543 12344544332211100000 01111110000
Q ss_pred CHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCc--EEEEeCC
Q 001048 675 TVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEP 752 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~--illlDEP 752 (1174)
+++ .. ++...+..+ .... ....|.+|.++...+.....+|+ ++++|||
T Consensus 83 ---~~~------~~------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 83 ---KKL------II------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSV 132 (235)
T ss_dssp ---TTE------EE------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred ---CCE------EE------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence 000 00 000000000 0000 12359999998888888888999 9999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHH-cCCEEEEEecCCC-------HHHHHHhcceeEEec
Q 001048 753 TSGL--DARAAATVMRAVKNVVE-TGRTVVCTIHQPS-------IDIFEAFDDLVLMKN 801 (1174)
Q Consensus 753 tsgL--D~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~-------~~~~~~~d~~~~l~~ 801 (1174)
|+++ |+.....+++.|+++++ .|.|||+++|+.+ ..+.+.+|+++++.+
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 9888 99999999999999875 4999999999872 236677888888864
No 158
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.41 E-value=1.3e-14 Score=167.90 Aligned_cols=173 Identities=18% Similarity=0.161 Sum_probs=111.5
Q ss_pred ccccccceeEEeCCeE--EEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 001048 599 LQLLSDITGTFRPGIL--TALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~--~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
.+ |+++|+++++|++ ++|+||||||||||+|+|+|..- .|.-. ... .....++.++|++|++.+++.+||
T Consensus 28 ~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~~--~~~~~~~~i~~v~Q~~~l~~~ltv 99 (427)
T 2qag_B 28 LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPA-THT--QPGVQLQSNTYDLQESNVRLKLTI 99 (427)
T ss_dssp -C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEEEE
T ss_pred ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcC-CCC--CccceEeeEEEEeecCccccccch
Confidence 45 9999999999999 99999999999999999999742 12111 110 111234568999999888888999
Q ss_pred HHHHHHHHhhccCCCCCHH----HHHHHHHHHHHHc-CCC----Cccccc----cc--CCCCCCCCHHHHHHHHHHHHhh
Q 001048 677 EESIVFSAWLRLSTQIDSK----TKAEFVNEVLQTI-ELD----GIKDSL----VG--LPGVNGLSTEQRKRLTIAVELV 741 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~----~~~~~~~~~l~~l-~l~----~~~~~~----~~--~~~~~~LSgGqrqRv~ia~al~ 741 (1174)
.||+.++.... ...... ...+..++.++.. ++. ...|+. +. .+...+|+-.+ +.|+++|.
T Consensus 100 ~D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~ 174 (427)
T 2qag_B 100 VSTVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLD 174 (427)
T ss_dssp EEEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTC
T ss_pred hhhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHh
Confidence 99987653210 000001 1123344555544 433 222332 11 11123577776 78999999
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEecC
Q 001048 742 ANPSIIFMDEPTSGLDARAAATVMRAVKN-VVETGRTVVCTIHQ 784 (1174)
Q Consensus 742 ~~p~illlDEPtsgLD~~~~~~i~~~l~~-l~~~g~tvi~~~H~ 784 (1174)
.+++++++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 99999999999999999999999998886 77779999888864
No 159
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.40 E-value=3.4e-13 Score=137.80 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHhhc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 724 NGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 724 ~~LSgGqrqRv~ia~al~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
..||||||||++||++|+. +|++++|||||+|||+.++..+.+.|+++.+ +.++|++||+. ...+.+|+++.+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~v 139 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIGV 139 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEEE
Confidence 4699999999999999974 4699999999999999999999999999865 57899999974 567788988866
Q ss_pred e
Q 001048 800 K 800 (1174)
Q Consensus 800 ~ 800 (1174)
.
T Consensus 140 ~ 140 (173)
T 3kta_B 140 S 140 (173)
T ss_dssp E
T ss_pred E
Confidence 3
No 160
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.38 E-value=3.1e-13 Score=159.95 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=73.5
Q ss_pred CCccccchhHHHHHHhcCC--cEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeee---
Q 001048 61 VSGGQKKRLTTGELIVGPT--RALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILM--- 135 (1174)
Q Consensus 61 LSGGqKkRvSIA~aLv~~P--~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL--- 135 (1174)
+||||||||+||++|+.+| +||+|||||+|||+.++..+.+.|++++ .|.|||+..|.| ++.+.+|++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~--~~~~~~d~i~~l~k~ 371 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLA--QIAARAHHHYKVEKQ 371 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCH--HHHTTCSEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcH--HHHhhcCeEEEEEEe
Confidence 6999999999999999999 9999999999999999999999999997 378999887875 678999999999
Q ss_pred -cCCcEEEeC
Q 001048 136 -AEGKIVYHG 144 (1174)
Q Consensus 136 -~~G~vvy~G 144 (1174)
.+|+++-..
T Consensus 372 ~~~G~~~~~~ 381 (415)
T 4aby_A 372 VEDGRTVSHV 381 (415)
T ss_dssp EETTEEEEEE
T ss_pred ccCCceEEEE
Confidence 899987654
No 161
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.37 E-value=1.2e-14 Score=155.41 Aligned_cols=126 Identities=17% Similarity=0.131 Sum_probs=85.3
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH----HHHHHHH
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV----EESIVFS 683 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv----~e~l~~~ 683 (1174)
..++|++++|+||||||||||+++|+|..++.+..|.|.+++.+... ..++.++|++|++..++.+|+ .|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 57899999999999999999999999977532368999998876432 223457899986543333322 1111110
Q ss_pred HhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHH
Q 001048 684 AWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAT 763 (1174)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~ 763 (1174)
.... +.| +++ +++++.+++++||| ||+.++..
T Consensus 91 -------------------------------~~~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 91 -------------------------------GNYY------GTS---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp -------------------------------TEEE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred -------------------------------hccC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 0000 112 222 34556668999999 99999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCCC
Q 001048 764 VMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 764 i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
+.+.+. +++||++++|+++
T Consensus 123 i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 123 IRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHCT----TCEEEEEECSSHH
T ss_pred HHHHcc----CCEEEEEECCCHH
Confidence 998876 5899999999753
No 162
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.35 E-value=1.1e-15 Score=160.18 Aligned_cols=167 Identities=16% Similarity=0.147 Sum_probs=108.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQ 691 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~ 691 (1174)
|++++|+||||||||||+++|++. ..|.+.++|.+.... ...++++|.....+..|+++++.+.+......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 72 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLA- 72 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhc-
Confidence 789999999999999999999873 247788888654221 12356666554444567888877653221100
Q ss_pred CCHHHHHHHHHHHHHHcCCCCcccccccC---CCCCCC--CHHHHHHHHHHH------HhhcCCcEEEEeCCCCCCCHHH
Q 001048 692 IDSKTKAEFVNEVLQTIELDGIKDSLVGL---PGVNGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARA 760 (1174)
Q Consensus 692 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~L--SgGqrqRv~ia~------al~~~p~illlDEPtsgLD~~~ 760 (1174)
+.....+...+. ...+.+ |+|++|++.++. +++.+|+...+|| +||+..
T Consensus 73 -----------------~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 73 -----------------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp -----------------TCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred -----------------CCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 000001110000 000124 888888888888 8999999888884 899988
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecC-CCHHHHHHhcceeEEecCcEEEEEcCCC
Q 001048 761 AATVMRAVKNVVETGRTVVCTIHQ-PSIDIFEAFDDLVLMKNGGRIIYFGPLG 812 (1174)
Q Consensus 761 ~~~i~~~l~~l~~~g~tvi~~~H~-~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 812 (1174)
... .+.++.+.+.+.++|.++|+ ++ ++.+.+|+++ ++|+++..|+++
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~~ 180 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAGD 180 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC----
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecCC
Confidence 888 88888876567899999998 65 6777888887 579999999874
No 163
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.35 E-value=4.4e-13 Score=143.82 Aligned_cols=155 Identities=18% Similarity=0.182 Sum_probs=98.6
Q ss_pred ccccccce-eEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 599 LQLLSDIT-GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 599 ~~iL~~vs-~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
.+.|+++. +-+++|++++|+||||||||||++.|++ ..+ .+.++ +..++. .+..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~-----------------i~~~~~----~~~~ 60 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAY-----------------VDTEGG----FSPE 60 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEE-----------------EESSCC----CCHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEE-----------------EECCCC----CCHH
Confidence 35677776 4899999999999999999999999998 221 12233 322221 1111
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH--HHHHHHHHHHhhcC-CcEEEEeCCCC
Q 001048 678 ESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTS 754 (1174)
Q Consensus 678 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG--qrqRv~ia~al~~~-p~illlDEPts 754 (1174)
.+.-.. . ...... +++++.+. +. ..|++ ++++++.+++++.+ |+++++||||+
T Consensus 61 -~~~~~~--~-~~~~~~-------~~~~~~~~--------~~-----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 61 -RLVQMA--E-TRGLNP-------EEALSRFI--------LF-----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp -HHHHHH--H-TTTCCH-------HHHHHHEE--------EE-----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred -HHHHHH--H-hcCCCh-------HHHhhcEE--------EE-----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 111000 0 001111 11222221 11 23444 36788899999986 99999999999
Q ss_pred CCCHHH--------HHHHHHHHHHHHHc-CCEEEEEecCCCH------------HHHHHhcceeEEecC
Q 001048 755 GLDARA--------AATVMRAVKNVVET-GRTVVCTIHQPSI------------DIFEAFDDLVLMKNG 802 (1174)
Q Consensus 755 gLD~~~--------~~~i~~~l~~l~~~-g~tvi~~~H~~~~------------~~~~~~d~~~~l~~~ 802 (1174)
++|+.. ...+++.|++++++ |.|+|+++|.... .+...+|.++++.+.
T Consensus 117 ~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 117 HYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 999743 24566668887754 8999999997541 356678888888754
No 164
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.34 E-value=2.9e-13 Score=156.53 Aligned_cols=131 Identities=20% Similarity=0.267 Sum_probs=96.0
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeE-EEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII-EGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~-~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
.+|++++ +++|++++|+||||||||||+++|+|..+ +. +|+|.+.|.+.. ...++.+++|+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~---------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE-YVFKHKKSIVNQRE---------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCC-SCCCCSSSEEEEEE----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHh-hhhccCceEEEeee----------
Confidence 4677776 89999999999999999999999999765 33 689977665543 23344567777731
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
+++.. ..+ +.+|+++|..+|+++++|||+ |+
T Consensus 191 -----------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~ 221 (372)
T 2ewv_A 191 -----------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DL 221 (372)
T ss_dssp -----------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SH
T ss_pred -----------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CH
Confidence 12210 124 469999999999999999999 77
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 759 RAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
.+.. .+++. +..|.+++.++|..+ ..+.+|+++.+.
T Consensus 222 e~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 222 ETVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 6543 34444 346899999999854 567788876653
No 165
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.33 E-value=1.4e-12 Score=133.33 Aligned_cols=74 Identities=19% Similarity=0.308 Sum_probs=62.8
Q ss_pred ccCCccccchhHHHHHHh----cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheee
Q 001048 59 RGVSGGQKKRLTTGELIV----GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVIL 134 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~aLv----~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~Iiv 134 (1174)
..||||||||++||++++ ++|++++|||||+|||+.++..+.+.|+++++ +.++|+..|+ ..+.+.+|+++.
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~--~~~~~~ad~i~~ 138 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLR--DVMMANADKIIG 138 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSC--HHHHTTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEec--HHHHHhCCEEEE
Confidence 459999999999999996 56799999999999999999999999999864 3456655454 578899999997
Q ss_pred ec
Q 001048 135 MA 136 (1174)
Q Consensus 135 L~ 136 (1174)
+.
T Consensus 139 v~ 140 (173)
T 3kta_B 139 VS 140 (173)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 166
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.33 E-value=6.7e-15 Score=154.45 Aligned_cols=142 Identities=13% Similarity=0.056 Sum_probs=88.3
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHHHHHHHHhh
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEESIVFSAWL 686 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~ 686 (1174)
.+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ..++.++|++|+.. +..||.||+.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 467999999999999999999999999743 58899998764221 11234567777543 457899998765432
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHH
Q 001048 687 RLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMR 766 (1174)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~ 766 (1174)
....... ..++.+++..++....+ .+. ....+|+|++||+.++|++.++|+++ +|+.....+.+
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~--~~~-~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTA--LAR-PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHT--TCS-CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHh--cCC-CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1100000 00000000011111110 011 11359999999999999999999876 68877766666
Q ss_pred HHHHH
Q 001048 767 AVKNV 771 (1174)
Q Consensus 767 ~l~~l 771 (1174)
.++.+
T Consensus 143 ~~~~l 147 (191)
T 1zp6_A 143 QFADL 147 (191)
T ss_dssp HTTCC
T ss_pred HHhcc
Confidence 65544
No 167
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.32 E-value=5.5e-16 Score=176.08 Aligned_cols=156 Identities=13% Similarity=0.089 Sum_probs=101.7
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCCCC------CeEEEEEEECCeeCCcc------------------cccceEEEE---c
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGRKTG------GIIEGDIRIGGYPKVQH------------------TFARISGYC---E 665 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~~~~------~~~~G~i~~~g~~~~~~------------------~~~~~~~~v---~ 665 (1174)
++++|+|+||||||||+|.|.|...+ .+..|+|.+||.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999997521 13579999999875321 122345666 5
Q ss_pred cCCCCCCCCCHHHHHHHHHhhccCCCC--CHH-HHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhc
Q 001048 666 QNDIHSPNITVEESIVFSAWLRLSTQI--DSK-TKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA 742 (1174)
Q Consensus 666 Q~~~~~~~lTv~e~l~~~~~~~~~~~~--~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~ 742 (1174)
|+..+.+..++.||..++......... ... ....+++.++..+++.+..+... ++|+|||||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 766656677888776543100000000 000 00001112233344444443332 489999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 743 NPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 743 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 999 67888888875 5899999999853
No 168
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.32 E-value=4e-13 Score=154.99 Aligned_cols=137 Identities=17% Similarity=0.130 Sum_probs=99.7
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCc-ccccceEEEEc-cCCCCCCCCCHHH
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-HTFARISGYCE-QNDIHSPNITVEE 678 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~-Q~~~~~~~lTv~e 678 (1174)
+++++|+.+++|++++|+||||||||||+|+|+|..++ .+|.|.++|..... ...++.+++++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 44999999999999999999999999999999998873 58999998853211 12456788888 54321
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
+++++..+|..|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012233467777788888999999999986
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecC
Q 001048 759 RAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
..+.+.|+.+.....|++.++|..+ ....+||+..+..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2455667776554567899999864 56778888888653
No 169
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.30 E-value=5.3e-15 Score=171.66 Aligned_cols=166 Identities=9% Similarity=0.019 Sum_probs=98.9
Q ss_pred ccccceeEEeC--CeEEEEecCCCCCHHHHHHHHhCCCCCCeEE----EEEEECCeeCCcccccceEEEEccCCCCCCCC
Q 001048 601 LLSDITGTFRP--GILTALMGVSGAGKTTLMDVLSGRKTGGIIE----GDIRIGGYPKVQHTFARISGYCEQNDIHSPNI 674 (1174)
Q Consensus 601 iL~~vs~~i~~--Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~----G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~l 674 (1174)
+.+.|+++|++ |+.++|+||||||||||+++|+|... +.+ |++.+++... ..+..+...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~-------------~~~~~~~~~ 221 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLG-------------GDEQAMQYS 221 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSS-------------SCTTSSCTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcC-------------CCcccCChh
Confidence 46789999999 99999999999999999999999876 456 5554421100 001011111
Q ss_pred CHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCC--CCcccccccCCCCCCCCHHHHHHHHHHHHhh-cCCcEEEEeC
Q 001048 675 TVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIEL--DGIKDSLVGLPGVNGLSTEQRKRLTIAVELV-ANPSIIFMDE 751 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l--~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~-~~p~illlDE 751 (1174)
.. +++.+...- . ......+.+.+.+ .+..++.. ..+|+|++||..+++++. .+|++++|||
T Consensus 222 ~~-~~I~~~~q~---------~-~~~~~t~~~nl~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~lllLdE 285 (365)
T 1lw7_A 222 DY-PQMALGHQR---------Y-IDYAVRHSHKIAFIDTDFITTQA-----FCIQYEGKAHPFLDSMIKEYPFDVTILLK 285 (365)
T ss_dssp TH-HHHHHHHHH---------H-HHHHHHHCSSEEEESSCHHHHHH-----HHHHHHSCCCHHHHHHHHHSCCSEEEEEE
T ss_pred HH-HHHHHHHHH---------H-HHHHHhccCCEEEEeCCchHHHH-----HHHHHcCCCCHHHHHHHhhcCCCEEEECC
Confidence 22 334332110 0 0000000010000 01111111 136777788888888775 6999999999
Q ss_pred ---CC------CCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 752 ---PT------SGLDARAAATVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 752 ---Pt------sgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
|+ +++|...+..+.+.|+++.+ .|.++++++|. + +....++.+.++
T Consensus 286 ~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i 341 (365)
T 1lw7_A 286 NNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVI 341 (365)
T ss_dssp CCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHH
T ss_pred CCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHH
Confidence 65 58999999999999998764 48999999984 3 444555555554
No 170
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.29 E-value=1.5e-14 Score=158.49 Aligned_cols=146 Identities=12% Similarity=0.189 Sum_probs=98.2
Q ss_pred CCeEEEEecCCCCCHHHHHHHHh---CCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhh-
Q 001048 611 PGILTALMGVSGAGKTTLMDVLS---GRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWL- 686 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~---g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~- 686 (1174)
++++++|+||||||||||+++|+ |... +..|+|.++|.+.. ....+.+++++|+..+.+..|+.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 9765 56788877765422 11223345567777778888999999875321
Q ss_pred -----ccCCCCCHHHHHHHHHHHHHH--cC------------CCCcccccccCCCCCCCCHHHHHHHHHHHHh-hcCCcE
Q 001048 687 -----RLSTQIDSKTKAEFVNEVLQT--IE------------LDGIKDSLVGLPGVNGLSTEQRKRLTIAVEL-VANPSI 746 (1174)
Q Consensus 687 -----~~~~~~~~~~~~~~~~~~l~~--l~------------l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al-~~~p~i 746 (1174)
... ...... +.++.+.+. .+ +....++. +..||| |+ ++| +.+|++
T Consensus 103 ~~~~~il~-g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~ 167 (246)
T 2bbw_A 103 RGQHWLLD-GFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHV 167 (246)
T ss_dssp TTSCEEEE-SCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSS
T ss_pred CCCeEEEE-CCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCcc
Confidence 010 111111 122222211 11 11112222 235898 66 788 999999
Q ss_pred EEEe----CCCCCCCHHHHHHHHHHHHHHHHc
Q 001048 747 IFMD----EPTSGLDARAAATVMRAVKNVVET 774 (1174)
Q Consensus 747 lllD----EPtsgLD~~~~~~i~~~l~~l~~~ 774 (1174)
++|| |||+|||..++..+.+.++++.++
T Consensus 168 lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 168 HGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 9999 999999999999999999988764
No 171
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.28 E-value=2.1e-13 Score=161.30 Aligned_cols=103 Identities=9% Similarity=0.071 Sum_probs=84.1
Q ss_pred hHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHH--HhcCCcE----eeeeC-CCCCcChHHHHHHHHHHHHH
Q 001048 34 LQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGEL--IVGPTRA----LFMDE-ISNGLDSSTTFQIVSFLKHL 106 (1174)
Q Consensus 34 ~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~a--Lv~~P~I----L~LDE-PTSGLDS~sa~~v~~~L~~l 106 (1174)
++++++++.+||++..+ . +.|||||||||+||++ |+.+|+| |+||| ||+|||.. ...+.+.+++
T Consensus 216 ~~~~~ll~~~gl~~~~~--~-----~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~- 286 (460)
T 2npi_A 216 HNKQPMVKNFGLERINE--N-----KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK- 286 (460)
T ss_dssp CCBCCEECCCCSSSGGG--C-----HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCcccc--h-----hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH-
Confidence 34667889999988776 3 4599999999999999 9999999 99999 99999999 4444444443
Q ss_pred hHhCCCEEEEEecCCCh-----hHHhhhhh-----eeeec-CCcEEEeCCcchH
Q 001048 107 VHITDATALISLLQPAP-----ETFDLFDD-----VILMA-EGKIVYHGPLSYS 149 (1174)
Q Consensus 107 a~~~~~tvI~sihQps~-----~i~~lfD~-----IivL~-~G~vvy~G~~~~~ 149 (1174)
.+.|+|+.+|.+.. .+.+++|+ |++|. +|+++ .|++++.
T Consensus 287 ---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 287 ---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp ---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred ---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 46788888899882 45588999 99999 99999 9987543
No 172
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.28 E-value=2e-13 Score=159.76 Aligned_cols=153 Identities=16% Similarity=0.127 Sum_probs=103.9
Q ss_pred cccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------c--ccceEEEEccCCCCCC
Q 001048 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-------T--FARISGYCEQNDIHSP 672 (1174)
Q Consensus 602 L~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~--~~~~~~~v~Q~~~~~~ 672 (1174)
-+++|+++++|++++|+|+||||||||+++|+|... +..|+|.++|.+.... . .++.++|++|+..+.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 468999999999999999999999999999999765 3469999987664321 1 2456899999988888
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhh-cCCc-EEEEe
Q 001048 673 NITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELV-ANPS-IIFMD 750 (1174)
Q Consensus 673 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~-~~p~-illlD 750 (1174)
..|+++|+.++..- ..+ . -+++..|+.+... .+-..-+|++.+++++. ..|. +||..
T Consensus 361 ~~tV~e~l~~a~~~----~~D------v--VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKAR----NID------V--LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHT----TCS------E--EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhc----CCC------E--EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 89999999886421 110 0 0112222211111 12223457888898764 4573 55555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEec
Q 001048 751 EPTSGLDARAAATVMRAVKNVVE-TGRTVVCTIH 783 (1174)
Q Consensus 751 EPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H 783 (1174)
+||+|.|.. +.++.+.+ -|.|.|++||
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 588886554 33444443 3889999999
No 173
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.28 E-value=1.7e-12 Score=148.45 Aligned_cols=81 Identities=12% Similarity=0.124 Sum_probs=71.6
Q ss_pred cCCccccchhHHHHHHh---------cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhh
Q 001048 60 GVSGGQKKRLTTGELIV---------GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFD 130 (1174)
Q Consensus 60 GLSGGqKkRvSIA~aLv---------~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD 130 (1174)
.+|||||||++||++|+ ++|+||+||||||+||+..+..+++.|+++. .|+|++.| +.. .+|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th-~~~----~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTE-LAP----GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESS-CCT----TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEe-ccc----cCC
Confidence 59999999999999999 9999999999999999999999999998753 46776666 433 899
Q ss_pred heeeecCCcEEEeCCcchH
Q 001048 131 DVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 131 ~IivL~~G~vvy~G~~~~~ 149 (1174)
++++|.+|+++..|++++.
T Consensus 336 ~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEEECCCTTTS
T ss_pred EEEEEECCEEEecCCHHHH
Confidence 9999999999999987643
No 174
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.28 E-value=3.6e-12 Score=145.05 Aligned_cols=86 Identities=17% Similarity=0.216 Sum_probs=71.1
Q ss_pred ccCCccccchhHHHHHHh----cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhhe--
Q 001048 59 RGVSGGQKKRLTTGELIV----GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDV-- 132 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~aLv----~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~I-- 132 (1174)
..||||||||++||++|+ .+|+||+|||||++||+.++..+.+.|++++ .+.++|++.|.+ ++.+.+|++
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~--~~~~~~d~~~~ 293 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNK--IVMEAADLLHG 293 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCT--TGGGGCSEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCH--HHHhhCceEEE
Confidence 359999999999999997 7899999999999999999999999999985 367899888874 678899987
Q ss_pred eeecCCc-EEEeCCcch
Q 001048 133 ILMAEGK-IVYHGPLSY 148 (1174)
Q Consensus 133 ivL~~G~-vvy~G~~~~ 148 (1174)
++|.+|+ .+.....++
T Consensus 294 v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEESSSCEEEEECCC--
T ss_pred EEEeCCEEEEEEEEcch
Confidence 7888775 444444443
No 175
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.27 E-value=2.4e-14 Score=146.41 Aligned_cols=138 Identities=13% Similarity=0.235 Sum_probs=85.6
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCCCC-CeEEEEEEECCeeCCc------cccc-ceEE----EEccCCCCCCCCCHHHHH
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGRKTG-GIIEGDIRIGGYPKVQ------HTFA-RISG----YCEQNDIHSPNITVEESI 680 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~~------~~~~-~~~~----~v~Q~~~~~~~lTv~e~l 680 (1174)
++++|+|+||||||||+++|+|.+++ +...|.|.++|.++.. ..++ +.+| +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 58999999999999999999997652 1237999999987321 1233 3455 788876544 110
Q ss_pred HHHHhhccCCCCCHHHHHHHHHHHHHH-cCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEE-------EEeCC
Q 001048 681 VFSAWLRLSTQIDSKTKAEFVNEVLQT-IELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSII-------FMDEP 752 (1174)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~il-------llDEP 752 (1174)
... +....++++++. +. ..|+.+++ +||||||||++|||+++.+|++. .=|.|
T Consensus 77 -----------~~~-~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 -----------VSE-EEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp -----------CCH-HHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred -----------CCh-hhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 001 111134556655 43 36888885 49999999999999999999873 22444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHHcC
Q 001048 753 TSG---LDARAAATVMRAVKNVVETG 775 (1174)
Q Consensus 753 tsg---LD~~~~~~i~~~l~~l~~~g 775 (1174)
..+ +|......+.+.+.+..++|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 23444566777776555544
No 176
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.27 E-value=1.9e-12 Score=147.03 Aligned_cols=122 Identities=17% Similarity=0.134 Sum_probs=85.7
Q ss_pred cccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEEC-CeeCCcccccceEEEEccCCCCCCCCCHHHHH
Q 001048 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIG-GYPKVQHTFARISGYCEQNDIHSPNITVEESI 680 (1174)
Q Consensus 602 L~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~-g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l 680 (1174)
+++++.. .+|++++|+||||||||||+|+|+|.... +.+|+|.++ |.+.. ....+.+++++|+..++++.||+|+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~- 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF- 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTC-
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh-
Confidence 4455553 37999999999999999999999997651 347999887 65542 2334578999999888888899884
Q ss_pred HHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHh
Q 001048 681 VFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVEL 740 (1174)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al 740 (1174)
+ + ...+.++..+.+.++++.+++.+..|.... ++| ||+||++||+++
T Consensus 282 --~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~-----~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 --G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHD-----ADP-GCAIREAVENGA 328 (358)
T ss_dssp --C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSS-----SCT-TCHHHHHHHHTS
T ss_pred --h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCcc-----cCC-HHHHHHHHHhcC
Confidence 1 1 134455556677888999999887777653 699 999999999875
No 177
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.23 E-value=3e-13 Score=136.53 Aligned_cols=80 Identities=21% Similarity=0.140 Sum_probs=65.8
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 001048 597 TRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 597 ~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
+++.+++++|+++++|++++|+||||||||||+|+|+|.. + .+|+|.++|.++......+ .+++|+..++ .+||
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv 91 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLAD 91 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSC
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCc
Confidence 3467999999999999999999999999999999999977 3 4799999998764211111 2789988777 8999
Q ss_pred HHHHHH
Q 001048 677 EESIVF 682 (1174)
Q Consensus 677 ~e~l~~ 682 (1174)
.||+.+
T Consensus 92 ~e~l~~ 97 (158)
T 1htw_A 92 PEELEF 97 (158)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 999965
No 178
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.23 E-value=1.8e-11 Score=142.13 Aligned_cols=78 Identities=24% Similarity=0.351 Sum_probs=67.5
Q ss_pred CCCCHHHHHHH------HHHHHhhcC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcce
Q 001048 724 NGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 724 ~~LSgGqrqRv------~ia~al~~~-p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~ 796 (1174)
..||||||||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. ++.+||++||++. +...+|++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEE
Confidence 46999999988 567899999 99999999999999999999999999874 3579999999963 56778999
Q ss_pred eEEecCcE
Q 001048 797 VLMKNGGR 804 (1174)
Q Consensus 797 ~~l~~~G~ 804 (1174)
+++.++|.
T Consensus 356 ~~l~k~~~ 363 (371)
T 3auy_A 356 INVKKDGN 363 (371)
T ss_dssp EEEEESSS
T ss_pred EEEEecCC
Confidence 99876553
No 179
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.22 E-value=9.7e-12 Score=150.86 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=69.3
Q ss_pred ccC-CccccchhHHHHHHhcCC--cEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeee
Q 001048 59 RGV-SGGQKKRLTTGELIVGPT--RALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILM 135 (1174)
Q Consensus 59 rGL-SGGqKkRvSIA~aLv~~P--~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL 135 (1174)
..| ||||||||+||++|+.+| ++|+|||||+|||..++..|.+.|+++++ |+|||+..|.| ++...+|++++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~--~~~~~~d~~~~~ 470 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA--QIAARAHHHYKV 470 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCH--HHHHHSSEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEEEE
Confidence 346 999999999999999999 99999999999999999999999999985 68999888874 567789999999
Q ss_pred cCCc
Q 001048 136 AEGK 139 (1174)
Q Consensus 136 ~~G~ 139 (1174)
.+|.
T Consensus 471 ~~~~ 474 (517)
T 4ad8_A 471 EKQV 474 (517)
T ss_dssp ECCE
T ss_pred eccc
Confidence 7663
No 180
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.21 E-value=4.5e-14 Score=161.19 Aligned_cols=164 Identities=12% Similarity=0.135 Sum_probs=106.5
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------cccceEEEEccCCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-------TFARISGYCEQNDIH 670 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~Q~~~~ 670 (1174)
.+.+|+++|+++++|++++|+||||||||||+|+|+|... +.+|+|.+.|.+.... ..++.+++++|++.+
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 3579999999999999999999999999999999999765 3468999988775321 234567999998877
Q ss_pred CCCC------------CHHHHHHHHH-------------------hhc---------cCCCCCHHHHH---HHHHHHHHH
Q 001048 671 SPNI------------TVEESIVFSA-------------------WLR---------LSTQIDSKTKA---EFVNEVLQT 707 (1174)
Q Consensus 671 ~~~l------------Tv~e~l~~~~-------------------~~~---------~~~~~~~~~~~---~~~~~~l~~ 707 (1174)
++.. +++|.+.... .+. .... ...+.+ +.+.+....
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~-~~~~~~~i~~~i~~~~~i 197 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG-AGDELQGIKKGIFELADM 197 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC-C------CCTTHHHHCSE
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC-CcccHHHHHHHHhccccE
Confidence 6532 2233321100 000 0000 000000 001111111
Q ss_pred cCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhc------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001048 708 IELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAATVMRAVKNVVE 773 (1174)
Q Consensus 708 l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 773 (1174)
+.+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|......+++.|.++.+
T Consensus 198 vvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 198 IAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 111 112211 113479999999999999987 688886 999999999999999988653
No 181
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.21 E-value=1.1e-12 Score=148.44 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=97.8
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc-------ccc--eEEEEccCCCCCCCCCHHHH
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT-------FAR--ISGYCEQNDIHSPNITVEES 679 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~-------~~~--~~~~v~Q~~~~~~~lTv~e~ 679 (1174)
.++|++++|+||||||||||++.|+|... +..|+|.++|.+..... +++ .+.+++|+..+.|.+||+||
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 47899999999999999999999999765 44799999998864211 122 24599999888899999999
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHH
Q 001048 680 IVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 759 (1174)
Q Consensus 680 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~ 759 (1174)
+.++..... +. .+++..|+.+..+.. .++.-.+++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~--d~----------vliDtaG~~~~~~~l------------~~eL~~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGI--DV----------VLIDTAGRSETNRNL------------MDEMKKIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTC--SE----------EEEEECCSCCTTTCH------------HHHHHHHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccc--hh----------hHHhhccchhHHHHH------------HHHHHHHHHHhcCCCCEEEEecHHH-----
Confidence 987632110 00 012222332222221 1222348899998888889985554
Q ss_pred HHHHHHHHHHHHHH-cCCEEEEEecC
Q 001048 760 AAATVMRAVKNVVE-TGRTVVCTIHQ 784 (1174)
Q Consensus 760 ~~~~i~~~l~~l~~-~g~tvi~~~H~ 784 (1174)
..+++.++.+.+ .+.|+|++||.
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 355566666664 48999999995
No 182
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.20 E-value=8e-12 Score=143.21 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=66.8
Q ss_pred ccCCccccc------hhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhhe
Q 001048 59 RGVSGGQKK------RLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDV 132 (1174)
Q Consensus 59 rGLSGGqKk------RvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~I 132 (1174)
+.||||||| |+++|++|+.+|++|+|||||+|||+.+...+.+.|+++.+ .+.|+|++.|. .++.+.+|++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~--~~~~~~~d~~ 323 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHD--EELKDAADHV 323 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESC--GGGGGGCSEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECh--HHHHHhCCEE
Confidence 459999999 67888999999999999999999999999999999999875 46788888776 4688999999
Q ss_pred eeec
Q 001048 133 ILMA 136 (1174)
Q Consensus 133 ivL~ 136 (1174)
++|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
No 183
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.18 E-value=1.2e-11 Score=123.88 Aligned_cols=44 Identities=9% Similarity=0.158 Sum_probs=37.0
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE-EEEEecCC
Q 001048 741 VANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRT-VVCTIHQP 785 (1174)
Q Consensus 741 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t-vi~~~H~~ 785 (1174)
+.+|++|++|||++ +|...+..+.++++++.++|++ +|+++|.+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 56799999999998 6655588899999998877888 88899964
No 184
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.17 E-value=1.9e-11 Score=133.05 Aligned_cols=136 Identities=18% Similarity=0.260 Sum_probs=75.2
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhC--CCCC---CeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHH
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSG--RKTG---GIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIV 681 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g--~~~~---~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~ 681 (1174)
+-+++|++++|+||||||||||++.|++ ..++ +...|.+++++.+. + ...+-..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~-----------------~----~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT-----------------F----RPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC-----------------C----CHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC-----------------c----CHHHHHH
Confidence 5799999999999999999999999999 3321 01245566655321 0 1111000
Q ss_pred HHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH-HHHHHHhh--cCCcEEEEeCCCCCCCH
Q 001048 682 FSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR-LTIAVELV--ANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR-v~ia~al~--~~p~illlDEPtsgLD~ 758 (1174)
....+ .... +++++.+. +. ...+..+... +.-+.+++ .+|+++++|||++.+|+
T Consensus 78 ~~~~~----g~~~-------~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERY----GLSG-------SDVLDNVA--------YA----RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHT----TCCH-------HHHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHc----CCCH-------HHHhhCeE--------EE----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 11111 1111 11222110 00 1245554332 33333443 58999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHHHc-CCEEEEEecCCC
Q 001048 759 R-------A-----AATVMRAVKNVVET-GRTVVCTIHQPS 786 (1174)
Q Consensus 759 ~-------~-----~~~i~~~l~~l~~~-g~tvi~~~H~~~ 786 (1174)
. . ...+++.|++++++ |.|||+++|...
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 5 3 34566666666654 999999999653
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.15 E-value=1.6e-12 Score=151.42 Aligned_cols=173 Identities=14% Similarity=0.160 Sum_probs=97.5
Q ss_pred cccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHH
Q 001048 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIV 681 (1174)
Q Consensus 602 L~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~ 681 (1174)
-+++++++++|+.++|+|+|||||||||++|+|..+ .+.+.+... ....++++.+++. ..+++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT--l~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT--LSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS--SCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccce--ecceeeEEEecCc--ceEEEEeccc
Confidence 378999999999999999999999999999999642 123332211 1123344444320 0111111100
Q ss_pred HHHhhccCCCCCHHH--HHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHH
Q 001048 682 FSAWLRLSTQIDSKT--KAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 759 (1174)
Q Consensus 682 ~~~~~~~~~~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~ 759 (1174)
+.............. ..++++.++..+++. +.. ...||+||+||+++|++|+.+|.++++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 000000000111110 001122223333332 122 236999999999999999999999999 999998
Q ss_pred HHHHHHHHHHHH-HHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 760 AAATVMRAVKNV-VETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 760 ~~~~i~~~l~~l-~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
.+ ..++.+++. .+.|.+++.+|..-...+.+.++.+.-+
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~ 322 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALHAL 322 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHH
Confidence 77 444545444 3447676665543333566666655433
No 186
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.14 E-value=2.1e-12 Score=143.90 Aligned_cols=134 Identities=12% Similarity=0.063 Sum_probs=85.2
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHh---h
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAW---L 686 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~---~ 686 (1174)
+++.+++|.||||||||||.+.|.+.... .| . . ++.+.+|+|++.+++ .++++|+.++.. +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~-~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G-----G-EKSIGYASIDDFYLT-HEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G-----G-GSCEEEEEGGGGBCC-HHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C-----C-CceEEEeccccccCC-hHHHHHHhccccccch
Confidence 46889999999999999999999987642 11 0 1 334566699887765 588999987631 1
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCC----cccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHH
Q 001048 687 RLSTQIDSKTKAEFVNEVLQTIELDG----IKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 760 (1174)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~ 760 (1174)
....+.......+...+.++.+.... .....+.. ....+||||+||+++|++...+|+|||+||||+++|+..
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~-y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPK-YDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECC-EETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeecc-CccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 00001111111234455666554320 01111111 124699999999999833322999999999999999864
No 187
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.13 E-value=3.6e-11 Score=124.64 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=42.1
Q ss_pred hcCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Q 001048 741 VANPSIIFMDEPTS-GLDARAAATVMRAVKNVVETGRTVVCTIHQPSI 787 (1174)
Q Consensus 741 ~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~ 787 (1174)
+.+|++|+||||++ ++|+..+..+.+++++..++|+++|++||.+..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 45999999999995 999999999999999887789999999998753
No 188
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.11 E-value=6.6e-11 Score=137.37 Aligned_cols=100 Identities=15% Similarity=0.200 Sum_probs=78.3
Q ss_pred hHHHHHHHHhCCccc-------ccccccC----CCcccCCccccchh------HHHHHHhcC-CcEeeeeCCCCCcChHH
Q 001048 34 LQTDYILKILGLDIC-------ADTMVGD----PMRRGVSGGQKKRL------TTGELIVGP-TRALFMDEISNGLDSST 95 (1174)
Q Consensus 34 ~~v~~vl~~lgL~~~-------~dT~VG~----~~~rGLSGGqKkRv------SIA~aLv~~-P~IL~LDEPTSGLDS~s 95 (1174)
+.+++.++.+++.+. .+..+.+ ...+.+|||||||+ ++|++|.++ |++|+|||||+|||+.+
T Consensus 243 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~ 322 (371)
T 3auy_A 243 KYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENR 322 (371)
T ss_dssp HHHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHH
T ss_pred HHHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHH
Confidence 456778888888661 1222222 12345999999988 567899999 99999999999999999
Q ss_pred HHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecC
Q 001048 96 TFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAE 137 (1174)
Q Consensus 96 a~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~ 137 (1174)
+..+.+.|+++.. +.+||++.|.| ++...+|++++|.+
T Consensus 323 ~~~l~~~l~~~~~--~~~vi~~th~~--~~~~~~d~~~~l~k 360 (371)
T 3auy_A 323 RAKLAEIFRKVKS--IPQMIIITHHR--ELEDVADVIINVKK 360 (371)
T ss_dssp HHHHHHHHHHCCS--CSEEEEEESCG--GGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHhcc--CCeEEEEEChH--HHHhhCCEEEEEEe
Confidence 9999999998643 45788888886 46789999999973
No 189
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.11 E-value=5.2e-11 Score=122.86 Aligned_cols=76 Identities=7% Similarity=0.018 Sum_probs=63.5
Q ss_pred ccCCccccchhHHHHH-----HhcCCcEeeeeC--CCCCcChHHHHHHHHHHHHHhHhCCCEEEEEec--CCChhHHhhh
Q 001048 59 RGVSGGQKKRLTTGEL-----IVGPTRALFMDE--ISNGLDSSTTFQIVSFLKHLVHITDATALISLL--QPAPETFDLF 129 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~a-----Lv~~P~IL~LDE--PTSGLDS~sa~~v~~~L~~la~~~~~tvI~sih--Qps~~i~~lf 129 (1174)
..||||||||++||++ |+.+|++|+||| ||++||+.+...+.+.|++ .+.|+|++.| |....+-+.+
T Consensus 75 ~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~ 150 (178)
T 1ye8_A 75 VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIR 150 (178)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHH
T ss_pred cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHH
Confidence 3499999999999996 999999999999 9999999999999888875 4667888888 4555565666
Q ss_pred hheeeecCCcEEE
Q 001048 130 DDVILMAEGKIVY 142 (1174)
Q Consensus 130 D~IivL~~G~vvy 142 (1174)
|+ .+|++++
T Consensus 151 ~r----~~~~i~~ 159 (178)
T 1ye8_A 151 RL----PGAVLIE 159 (178)
T ss_dssp TC----TTCEEEE
T ss_pred hc----CCcEEEE
Confidence 76 5677766
No 190
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.10 E-value=7.4e-11 Score=139.86 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHhh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEe
Q 001048 725 GLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 800 (1174)
.||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|++||++ ...+.+|+++.+.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 49999999999999999 58999999999999999999999999999865588999999984 5677889998886
Q ss_pred c
Q 001048 801 N 801 (1174)
Q Consensus 801 ~ 801 (1174)
.
T Consensus 411 ~ 411 (430)
T 1w1w_A 411 R 411 (430)
T ss_dssp E
T ss_pred E
Confidence 4
No 191
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.08 E-value=2.9e-13 Score=157.99 Aligned_cols=137 Identities=14% Similarity=0.054 Sum_probs=92.1
Q ss_pred ccccccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-------cccceEEEEc--
Q 001048 595 NQTRLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-------TFARISGYCE-- 665 (1174)
Q Consensus 595 ~~~~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~-- 665 (1174)
..+...+|+++ +. ++|++++|+|||||||||||++|+|...+ .+|+|.+.|.++... ...+.+++.+
T Consensus 152 ~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~ 227 (418)
T 1p9r_A 152 TAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFAR 227 (418)
T ss_dssp CHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHH
T ss_pred CHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccccCcCHHH
Confidence 33445688888 53 89999999999999999999999997653 368899888765311 1223344544
Q ss_pred -------cCCCCC--CC----CCHHHHHHHHHhhcc----CCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH
Q 001048 666 -------QNDIHS--PN----ITVEESIVFSAWLRL----STQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST 728 (1174)
Q Consensus 666 -------Q~~~~~--~~----lTv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 728 (1174)
|++..+ .. .|+.+++.++..-.. ....+. .+.++ .+..+++.+.. .. ..|||
T Consensus 228 ~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~---~~~i~-rL~~lgl~~~~--~~-----~~LSg 296 (418)
T 1p9r_A 228 GLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTA---VGAVT-RLRDMGIEPFL--IS-----SSLLG 296 (418)
T ss_dssp HHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSS---HHHHH-HHHHHTCCHHH--HH-----HHEEE
T ss_pred HHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhH---HHHHH-HHHHcCCcHHH--HH-----HHHHH
Confidence 876542 33 589999987642110 011111 12233 45667876542 22 36999
Q ss_pred HHHHHHHHHHHhhcCCcEEE
Q 001048 729 EQRKRLTIAVELVANPSIIF 748 (1174)
Q Consensus 729 GqrqRv~ia~al~~~p~ill 748 (1174)
||+|| |||+|+.+|++..
T Consensus 297 g~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 297 VLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEE--EEEEECTTTCEEE
T ss_pred HHHHH--hhhhhcCCCCccC
Confidence 99999 9999999999875
No 192
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.08 E-value=3.7e-14 Score=169.96 Aligned_cols=172 Identities=11% Similarity=0.057 Sum_probs=102.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
..+++++++.+++|+.++|+|||||||||||++|+|..+ +.+|.|.++|.+.........++++.|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 468999999999999999999999999999999999886 347999998865211112334556655433222234444
Q ss_pred HHHHHHhhccC----CCCCHHHHHH------------------HHHHHHHHcCCCC---------cccccccCCCCCCCC
Q 001048 679 SIVFSAWLRLS----TQIDSKTKAE------------------FVNEVLQTIELDG---------IKDSLVGLPGVNGLS 727 (1174)
Q Consensus 679 ~l~~~~~~~~~----~~~~~~~~~~------------------~~~~~l~~l~l~~---------~~~~~~~~~~~~~LS 727 (1174)
++....+.+.. ......+... .+.++++.+.... ..+..+.. ...+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~--~~~~s 402 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQ--TMWVR 402 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEE--EEEES
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEE--EEEEe
Confidence 44322111000 0111111100 1122233322211 11111110 12479
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE--EecCCC
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVC--TIHQPS 786 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~--~~H~~~ 786 (1174)
||||||++++. + | |+|||+.....+++.|.++.++|+|+++ ++|+++
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ 451 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE 451 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH
Confidence 99999877642 1 7 9999998887777777777666888875 889753
No 193
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.05 E-value=8.1e-12 Score=140.45 Aligned_cols=123 Identities=13% Similarity=0.174 Sum_probs=81.6
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE---CCeeCCccc--cc-ceEEEEccCCCCC-----CCCCH
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI---GGYPKVQHT--FA-RISGYCEQNDIHS-----PNITV 676 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~~--~~-~~~~~v~Q~~~~~-----~~lTv 676 (1174)
.+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|++..... .+ +.+||++|++.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34569999999999999999999999 766 46899999 887764321 11 2479999998653 67899
Q ss_pred HHHH--HHHH----hhccCCCCCHHHHHHHHHHHHHHcCCCC-cccccccCCCCCCCCHHHHHHHHHHHH
Q 001048 677 EESI--VFSA----WLRLSTQIDSKTKAEFVNEVLQTIELDG-IKDSLVGLPGVNGLSTEQRKRLTIAVE 739 (1174)
Q Consensus 677 ~e~l--~~~~----~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~a 739 (1174)
||+ .|+. .++........+...+++++++.++|.+ ..+... +.|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 888 4431 0111110111223356889999999985 556554 3599999999999874
No 194
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.01 E-value=1.9e-12 Score=137.71 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=68.1
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCCCC-CeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhc
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRKTG-GIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLR 687 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~ 687 (1174)
.++|++++|+||||||||||+++|+|...+ ++..|.|.++|..... +..+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~--------------------~~~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDN--------------------RLLEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCH--------------------HHHGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCH--------------------HHHHHhcccccCC
Confidence 578999999999999999999999997652 1234555555443221 1111110000000
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHH-HHhhcCCcEEEEeCCC
Q 001048 688 LSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIA-VELVANPSIIFMDEPT 753 (1174)
Q Consensus 688 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia-~al~~~p~illlDEPt 753 (1174)
.+...+.. ...+.+..+...+..+....+.+. ++|+||+||+++| ++++.++.++++|||.
T Consensus 79 ~~~~~~~~----~~~~~l~~l~~~~~i~~p~~d~~~-~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 79 APETFDFE----GFQRLCHALKHQERVIYPLFDRAR-DIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp SGGGBCHH----HHHHHHHHHHHCSCEEEEEEETTT-TEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CCchhhHH----HHHHHHHHHhcCCceecccCCccc-cCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 00011111 122223322211222223333232 4899999999998 8899999998899984
No 195
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.00 E-value=1e-10 Score=135.60 Aligned_cols=134 Identities=20% Similarity=0.259 Sum_probs=75.8
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHH--hCCCCC---CeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHH
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVL--SGRKTG---GIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIV 681 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l--~g~~~~---~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~ 681 (1174)
+-+++|++++|+||||||||||++.| .+..+. +...+.+++++... + ....-..
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~-----------------~----~~~rl~~ 231 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT-----------------F----RPVRLVS 231 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC-----------------C----CHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc-----------------c----CHHHHHH
Confidence 57999999999999999999999954 454431 11134555555431 0 1110000
Q ss_pred HHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCH-HHHHHHHHHHHhh--cCCcEEEEeCCCCCCCH
Q 001048 682 FSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLST-EQRKRLTIAVELV--ANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg-GqrqRv~ia~al~--~~p~illlDEPtsgLD~ 758 (1174)
....+ .... +.+++.+ .+. +..++ .+.+.+.-+.+++ .+|+++++||||+.+|+
T Consensus 232 ~a~~~----gl~~-------~~vleni--------~~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 232 IAQRF----GLDP-------DDALNNV--------AYA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHT----TCCH-------HHHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHc----CCCh-------HhHhhcE--------EEe----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 11111 0111 0122211 111 01222 2333444344433 47999999999999997
Q ss_pred HHH------------HHHHHHHHHHHHc-CCEEEEEecC
Q 001048 759 RAA------------ATVMRAVKNVVET-GRTVVCTIHQ 784 (1174)
Q Consensus 759 ~~~------------~~i~~~l~~l~~~-g~tvi~~~H~ 784 (1174)
... ..+++.|++++++ |.|||+++|.
T Consensus 289 ~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 289 DFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 543 5678888888765 9999999997
No 196
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=2.3e-10 Score=132.09 Aligned_cols=163 Identities=14% Similarity=0.054 Sum_probs=84.5
Q ss_pred EEEecCCCCCHHHHHHHHhC-CCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCC
Q 001048 615 TALMGVSGAGKTTLMDVLSG-RKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQI 692 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g-~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~ 692 (1174)
+.|.||||+|||||+++|+| ... +..|++.++|.+.... ..+..+++++|.+.+....+ +. + ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~-------~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--DM---G-------NN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--hc---C-------Cc
Confidence 89999999999999999999 444 3468888888764321 12345678888654321111 00 0 00
Q ss_pred CHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001048 693 DSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV 772 (1174)
Q Consensus 693 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~ 772 (1174)
... .+++.++.+......+... .+|| +..+|+++++|||++ ||..++..+.+.|++..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1233333322111111111 2566 788999999999999 99999999999998864
Q ss_pred HcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCccchhhhhhhh
Q 001048 773 ETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQHSCKVIEYFE 823 (1174)
Q Consensus 773 ~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~~~~~~~~~f~ 823 (1174)
.+.++|+++|+++. +.... . .....+...+++. .++.++..
T Consensus 163 -~~~~~Il~t~~~~~-l~~~l-----~-sR~~~~~~~~~~~--~~~~~~l~ 203 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSP-IIAPI-----K-SQCLLIRCPAPSD--SEISTILS 203 (354)
T ss_dssp -TTEEEEEEESCSCS-SCHHH-----H-TTSEEEECCCCCH--HHHHHHHH
T ss_pred -CCCEEEEEeCCHHH-HHHHH-----H-hhceEEecCCcCH--HHHHHHHH
Confidence 37899999999762 22221 1 1235566666653 34444444
No 197
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.96 E-value=4.6e-10 Score=133.01 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=66.5
Q ss_pred cCCccccchhHHHHHHh----cCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeee
Q 001048 60 GVSGGQKKRLTTGELIV----GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILM 135 (1174)
Q Consensus 60 GLSGGqKkRvSIA~aLv----~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL 135 (1174)
.||||||||++||++|+ ++|++++|||||++||+.+...+.+.|+++.. .+.++|++.|. ..+.+.+|++++|
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~--~~~~~~~d~~~~~ 409 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALVGV 409 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECC--HHHHHhCCEEEEE
Confidence 39999999999999999 68999999999999999999999999999764 36788887776 5778899999999
Q ss_pred cC
Q 001048 136 AE 137 (1174)
Q Consensus 136 ~~ 137 (1174)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 198
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.94 E-value=1.9e-10 Score=121.59 Aligned_cols=52 Identities=17% Similarity=0.035 Sum_probs=45.9
Q ss_pred cccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCC
Q 001048 64 GQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPA 122 (1174)
Q Consensus 64 GqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps 122 (1174)
||||||+||++|+.+|+||+|||||+| ++..+++.|+++ + .|+|+| +.|.+.
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~~ 159 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDIT 159 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC--
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCHH
Confidence 999999999999999999999999999 889999999987 3 478888 777654
No 199
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.91 E-value=1.2e-10 Score=119.51 Aligned_cols=59 Identities=12% Similarity=-0.042 Sum_probs=53.6
Q ss_pred CCccccchhHHHHHHhcCCcEeeeeCCCCCcChH----------------HHHHHHHHHHHHhHhCCCEEEEEecC
Q 001048 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSS----------------TTFQIVSFLKHLVHITDATALISLLQ 120 (1174)
Q Consensus 61 LSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~----------------sa~~v~~~L~~la~~~~~tvI~sihQ 120 (1174)
.|||||||++||+++..+|++|+|||||+|||+. +...+++.|+++.+. |.|+|++.|.
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~ 158 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNS 158 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECS
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCC
Confidence 6999999999999999999999999999999999 558889999888765 8899988774
No 200
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.88 E-value=1.6e-11 Score=140.51 Aligned_cols=153 Identities=16% Similarity=0.112 Sum_probs=96.2
Q ss_pred cccccccceeEEeCC-------eEEEEecCCCCCHHHHHHHHhCCCCC--CeEEEEEEECCeeCCc---ccccceEEEEc
Q 001048 598 RLQLLSDITGTFRPG-------ILTALMGVSGAGKTTLMDVLSGRKTG--GIIEGDIRIGGYPKVQ---HTFARISGYCE 665 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~G-------e~~~l~G~sGsGKSTLl~~l~g~~~~--~~~~G~i~~~g~~~~~---~~~~~~~~~v~ 665 (1174)
+..+++++++.+++| +.++|.||||+|||||+++|+|.... .+.+|.+..++.++.. ...++.+.+++
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 356899999999887 89999999999999999999996421 1456666655544321 11235689999
Q ss_pred cCCCCCCCCCHHHHHHHHHhhccCCC-CCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCC
Q 001048 666 QNDIHSPNITVEESIVFSAWLRLSTQ-IDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANP 744 (1174)
Q Consensus 666 Q~~~~~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p 744 (1174)
|.+.+.+ ++.|++..........- .......+.++..++.+++.. +++.. ..||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~-----~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRS-----GLLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCG-----GGSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCc-----ccCCHHHHHhcCce-------
Confidence 9877654 78888854332211000 001112233444444445443 34433 36999999998654
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 001048 745 SIIFMDEPTSGLDARAAATVMRAVKNVVET 774 (1174)
Q Consensus 745 ~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 774 (1174)
.+||+.+..++.+.|++.++.
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAASL 195 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHHH
Confidence 788888899999999987653
No 201
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.85 E-value=1.5e-12 Score=144.36 Aligned_cols=128 Identities=15% Similarity=0.137 Sum_probs=86.1
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccceEEEEccCC-CCCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFARISGYCEQND-IHSPN 673 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~Q~~-~~~~~ 673 (1174)
+..+++++++.+++| ++|.||||||||||+++|+|.... |.+.++|.++... ...+.+++++|+. ...|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 456899999999999 999999999999999999997652 6899998765322 1223456777753 34455
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 674 ITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 674 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
+++.|++......+ .. .... .+....+... ..|||||+||+.|++++..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r-----~~----~~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRR-----SD----RETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhccc-----CC----Ccch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 56666654321100 00 0000 0122223332 259999999999999999999986 8875
No 202
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.85 E-value=1.8e-10 Score=128.38 Aligned_cols=119 Identities=19% Similarity=0.224 Sum_probs=67.0
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE---CCeeCCcc-cccce-EEEEccCCCCCC----CCCHH
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI---GGYPKVQH-TFARI-SGYCEQNDIHSP----NITVE 677 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~-~~~~~-~~~v~Q~~~~~~----~lTv~ 677 (1174)
+++.+|++++|+||||+|||||+|+|+|... +.+|+|.+ +|+..+.. ...+. .||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5677999999999999999999999999876 56899998 77765432 11122 699999987755 6899
Q ss_pred HHHH--HHHh------hccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHH
Q 001048 678 ESIV--FSAW------LRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKR 733 (1174)
Q Consensus 678 e~l~--~~~~------~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 733 (1174)
|++. |... ++........+....++++++.++|.+...... ..++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 3311 111110111122345788999999976332221 2477787763
No 203
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.83 E-value=2e-13 Score=143.95 Aligned_cols=55 Identities=11% Similarity=0.232 Sum_probs=40.9
Q ss_pred HHH-HhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEE
Q 001048 736 IAV-ELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLM 799 (1174)
Q Consensus 736 ia~-al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 799 (1174)
.++ +++.+|++++|||+|+++|..+...|.+.|.+..++ +...|.+ ..+|.+++.
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivn 171 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIN 171 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEEC
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEEC
Confidence 456 788889999999999999999999999999887653 2344521 356665544
No 204
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.82 E-value=5.1e-12 Score=145.63 Aligned_cols=171 Identities=10% Similarity=0.083 Sum_probs=114.5
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCC----------CCeEEEEEEECCeeCCc----ccccce---EEEEccCCCC
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKT----------GGIIEGDIRIGGYPKVQ----HTFARI---SGYCEQNDIH 670 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~----------~~~~~G~i~~~g~~~~~----~~~~~~---~~~v~Q~~~~ 670 (1174)
.+++|+.++|+|+||||||||+|+|+|... -.|..|.+.++|..... ...++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999321 12568999998843211 011222 2466677777
Q ss_pred CCCCCHHHHH--HHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCC--cE
Q 001048 671 SPNITVEESI--VFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANP--SI 746 (1174)
Q Consensus 671 ~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p--~i 746 (1174)
....+..|++ .|-..++. ++.++..++..+ |.. +..+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~~-----i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DAE-----IIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TTC-----SSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cce-----eeeecccc------------Ccchhh
Confidence 7777766655 33332221 111122222211 111 12355542 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HHcCCEEEEEecCCCHHHHHHhccee-EEecCc-EEEEEcCCCc
Q 001048 747 IFMDEPTSGLDARAAATVMRAVKNV-VETGRTVVCTIHQPSIDIFEAFDDLV-LMKNGG-RIIYFGPLGQ 813 (1174)
Q Consensus 747 lllDEPtsgLD~~~~~~i~~~l~~l-~~~g~tvi~~~H~~~~~~~~~~d~~~-~l~~~G-~~v~~G~~~~ 813 (1174)
+++|||+.++|+......++.++++ ++.|.|++ +|... ++.+.+|++. +|. +| ++++.|+.++
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~-~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLT-ETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHH-TTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhc-cCCceeecCCCCH
Confidence 9999999999999999999999988 66677764 99864 6778888888 564 68 8888777653
No 205
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.79 E-value=3.2e-10 Score=126.17 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=66.5
Q ss_pred HHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEE
Q 001048 35 QTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATA 114 (1174)
Q Consensus 35 ~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tv 114 (1174)
.+++.++.+ |.+..| | ..|||||||| ||+|+++|+||+ ||+||+.++..++. +
T Consensus 183 ~~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l-------- 235 (305)
T 2v9p_A 183 ACWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L-------- 235 (305)
T ss_dssp HHHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G--------
T ss_pred HHHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H--------
Confidence 345566664 555445 3 4599999999 999999999999 99999999998862 1
Q ss_pred EEEecCCChhHHhhhhheeeecCCcEEEeCCcchHHHHHhh
Q 001048 115 LISLLQPAPETFDLFDDVILMAEGKIVYHGPLSYSCKFFEG 155 (1174)
Q Consensus 115 I~sihQps~~i~~lfD~IivL~~G~vvy~G~~~~~~~yf~~ 155 (1174)
.|+.++++.+|+| +|.+|++++.|++++...+|..
T Consensus 236 -----tH~~~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 236 -----HSRVQTFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp -----TTTEEEEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred -----hCCHHHHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 3445567789999 9999999999999887665544
No 206
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.77 E-value=4.7e-10 Score=126.11 Aligned_cols=101 Identities=15% Similarity=0.233 Sum_probs=65.4
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE---CCeeCCccc--c-cceEEEEccCCC------------
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI---GGYPKVQHT--F-ARISGYCEQNDI------------ 669 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~~--~-~~~~~~v~Q~~~------------ 669 (1174)
++.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|++..... . .+.+|||+|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 456799999999999999999999999877 56899999 888764321 1 134799999874
Q ss_pred ----CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCC-Cccccc
Q 001048 670 ----HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELD-GIKDSL 717 (1174)
Q Consensus 670 ----~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~ 717 (1174)
++|++|+ ||+.|.. .. . ..+...++.++++.++|. +..+..
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~-~----~~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CN-H----VDEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CC-S----SSCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCC-Cc-C----CCCCCcHHHHHHHcCCCCHHHHHHH
Confidence 4788999 9988752 11 1 112235688899999995 555544
No 207
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.76 E-value=1.6e-10 Score=130.52 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=86.7
Q ss_pred cccccceeEE-------------------eCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE---CCeeCCcccc
Q 001048 600 QLLSDITGTF-------------------RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI---GGYPKVQHTF 657 (1174)
Q Consensus 600 ~iL~~vs~~i-------------------~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~~~ 657 (1174)
++++++++.+ ++|+++||+||||||||||+++|+|.....+.+|+|.+ ||..... ..
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~-~~ 127 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPN-QV 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH-HH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcH-HH
Confidence 6889999988 99999999999999999999999996441123789999 8876432 22
Q ss_pred cceEEEEccCCCCCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHH
Q 001048 658 ARISGYCEQNDIHSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIA 737 (1174)
Q Consensus 658 ~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia 737 (1174)
++.++++ |+..+++.+|+.+++.+...++.... ..... ..+ .+.+ +|+..+
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~---------------~i~~P-~~~----------~~~~--~~~~~~ 178 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP---------------NVTAP-VYS----------HLIY--DVIPDG 178 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS---------------CEEEC-CEE----------TTTT--EECTTC
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC---------------ceecc-ccc----------cccc--Cccccc
Confidence 3446788 77777788999999988655432110 00000 111 1111 222222
Q ss_pred HHhhcCCcEEEEeCCCCCCCH
Q 001048 738 VELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 738 ~al~~~p~illlDEPtsgLD~ 758 (1174)
.+.+.+|+++|+|.|....|.
T Consensus 179 ~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 179 DKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp CEEEC-CCEEEEECTTTTCCG
T ss_pred ceecCCCCEEEECchhhCCCc
Confidence 345667899999999988773
No 208
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.74 E-value=1.3e-09 Score=126.58 Aligned_cols=99 Identities=12% Similarity=0.054 Sum_probs=80.5
Q ss_pred hHHHHHHHHhCCcccccccccCCCcccCCcc--ccchhHHHHHHhc----------CCcEeeeeCCCCCcChHHHHHHHH
Q 001048 34 LQTDYILKILGLDICADTMVGDPMRRGVSGG--QKKRLTTGELIVG----------PTRALFMDEISNGLDSSTTFQIVS 101 (1174)
Q Consensus 34 ~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGG--qKkRvSIA~aLv~----------~P~IL~LDEPTSGLDS~sa~~v~~ 101 (1174)
.+++++++.++|.+.. ..+ . |||| ||||+.||++|.. +|++++|||||+|||+.++.++++
T Consensus 135 ~~~~~~L~~~~L~~~~-~~~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~ 207 (413)
T 1tq4_A 135 FPPDTYLEKMKFYEYD-FFI-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQ 207 (413)
T ss_dssp CCHHHHHHHTTGGGCS-EEE-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCccC-CeE-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHH
Confidence 4589999999998763 322 2 9999 9999999999999 999999999999999999999999
Q ss_pred HHHHHhH----hC----CCEEEEEecCCCh-hHHhhhhhee-eecCCc
Q 001048 102 FLKHLVH----IT----DATALISLLQPAP-ETFDLFDDVI-LMAEGK 139 (1174)
Q Consensus 102 ~L~~la~----~~----~~tvI~sihQps~-~i~~lfD~Ii-vL~~G~ 139 (1174)
.++++.. .. .+++++|-|.... .+-+++|+|. .|.+|+
T Consensus 208 ~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 208 DIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 9999852 22 3678788887664 5777888886 565554
No 209
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.73 E-value=3.1e-09 Score=118.89 Aligned_cols=113 Identities=15% Similarity=0.187 Sum_probs=76.0
Q ss_pred ceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHH
Q 001048 605 ITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSA 684 (1174)
Q Consensus 605 vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~ 684 (1174)
+++..++|++++|+|||||||||+++.|++... +..|+|.+.+.+.... ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~-------------------~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA-------------------AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH-------------------HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccccH-------------------HHHHH-----
Confidence 456678999999999999999999999999764 2245666655432100 00111
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHH---HHHHHhhcCCcEEEEeCCCCCCCHHHH
Q 001048 685 WLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 761 (1174)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv---~ia~al~~~p~illlDEPtsgLD~~~~ 761 (1174)
.....+..++... ...|||+.+++ ++++++..+|+++++|||.. ....
T Consensus 151 ----------------L~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 151 ----------------LKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ----------------HHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ----------------HHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 2223344454321 14689999999 99999999999999999974 3344
Q ss_pred HHHHHHHHHHH
Q 001048 762 ATVMRAVKNVV 772 (1174)
Q Consensus 762 ~~i~~~l~~l~ 772 (1174)
..+++.|+++.
T Consensus 202 ~~l~~eL~~l~ 212 (306)
T 1vma_A 202 KNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555543
No 210
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.70 E-value=3.2e-10 Score=134.46 Aligned_cols=176 Identities=12% Similarity=0.110 Sum_probs=102.7
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHhC--CCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCC--CHHHH
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNI--TVEES 679 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g--~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~l--Tv~e~ 679 (1174)
.+++++.++..++|.|++||||||+++.|.. ..... .|++.+.+.+.....+.. ...+|++ +|.++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~--p~~v~l~liDpK~~el~~--------~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ--PEDVRFIMIDPKMLELSV--------YEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC--TTTEEEEEECCSSSGGGG--------GTTCTTBSSSCBCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC--CceEEEEEECCchhhhhh--------hccCCcccceeecC
Confidence 4778888999999999999999999999875 22211 244554444432211110 0011111 12222
Q ss_pred HHHHHh-hccCCCCCHHHHHHHHHHHHHHcCCCCcccc--cccCCCCCCCCHHHHHHH----------HHHHHhhcCCc-
Q 001048 680 IVFSAW-LRLSTQIDSKTKAEFVNEVLQTIELDGIKDS--LVGLPGVNGLSTEQRKRL----------TIAVELVANPS- 745 (1174)
Q Consensus 680 l~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~--~~~~~~~~~LSgGqrqRv----------~ia~al~~~p~- 745 (1174)
...+.. ++ ....+.++| .+.++..|+.+..+. .+. ..+|+||+||. .+++++...|.
T Consensus 229 ~~~a~~~L~----~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~i 299 (512)
T 2ius_A 229 MKDAANALR----WCVNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYI 299 (512)
T ss_dssp HHHHHHHHH----HHHHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEE
T ss_pred HHHHHHHHH----HHHHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcE
Confidence 222111 11 012233344 367888887765432 111 13788887752 35677788998
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHc----CCEEEEEecCCCHH-----HHHHhcceeEE
Q 001048 746 IIFMDEPTSGLDARAAATVMRAVKNVVET----GRTVVCTIHQPSID-----IFEAFDDLVLM 799 (1174)
Q Consensus 746 illlDEPtsgLD~~~~~~i~~~l~~l~~~----g~tvi~~~H~~~~~-----~~~~~d~~~~l 799 (1174)
++++||++.-+|.. ...+.+.|.++++. |.++|++||+|+.+ +...+..++.+
T Consensus 300 vlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 300 VVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp EEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred EEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 79999999988843 34566666666543 77999999999732 44555544444
No 211
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.66 E-value=1.5e-09 Score=118.21 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=42.9
Q ss_pred cCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHH-------HHHHhcceeEEec
Q 001048 742 ANPSIIFMDEPTSGL--DARAAATVMRAVKNVV-ETGRTVVCTIHQPSID-------IFEAFDDLVLMKN 801 (1174)
Q Consensus 742 ~~p~illlDEPtsgL--D~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~-------~~~~~d~~~~l~~ 801 (1174)
.+|+++++|||++.+ |+......+..|.+++ +.|.|||+++|..... +.+.+|.++.+.+
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 6544556666666654 4589999999986521 3466788877753
No 212
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.66 E-value=3.2e-08 Score=110.60 Aligned_cols=127 Identities=14% Similarity=0.067 Sum_probs=84.3
Q ss_pred ccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHH
Q 001048 603 SDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVF 682 (1174)
Q Consensus 603 ~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~ 682 (1174)
++++++ +|++++++|+||+||||++..|++... +..|+|.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~------------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPA------------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHH------------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHh------------------HH-HHH--
Confidence 678888 999999999999999999999999754 22467777655432100 00 100
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCC-CCCCCHHHH
Q 001048 683 SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 761 (1174)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP-tsgLD~~~~ 761 (1174)
..+.+..++..... + .+-...+.+|.+|+++...+++++|+||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01122334432211 0 01344566789999998899999999999 999999888
Q ss_pred HHHHHHHHHHHHcCCEEEEE
Q 001048 762 ATVMRAVKNVVETGRTVVCT 781 (1174)
Q Consensus 762 ~~i~~~l~~l~~~g~tvi~~ 781 (1174)
..+.+..+.+. ...+++++
T Consensus 200 ~~l~~~~~~~~-~~~~~lv~ 218 (295)
T 1ls1_A 200 GELARLKEVLG-PDEVLLVL 218 (295)
T ss_dssp HHHHHHHHHHC-CSEEEEEE
T ss_pred HHHHHHhhhcC-CCEEEEEE
Confidence 88877776653 23344433
No 213
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.63 E-value=1e-08 Score=122.19 Aligned_cols=178 Identities=13% Similarity=0.174 Sum_probs=104.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEE-EEEECCeeCCccccc-ceEEEEccCCCCCCCCCH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEG-DIRIGGYPKVQHTFA-RISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G-~i~~~g~~~~~~~~~-~~~~~v~Q~~~~~~~lTv 676 (1174)
...|+++.+-+++|+++.|.|+||+|||||+..+++.... ..| .|.+.+.+....... +..+... ....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~ 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH
Confidence 4578888888999999999999999999999999874321 012 233322111111000 0000000 0000
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhh--cCCcEEEEeCCCC
Q 001048 677 EESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELV--ANPSIIFMDEPTS 754 (1174)
Q Consensus 677 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~--~~p~illlDEPts 754 (1174)
+. ++. ...... ..+++.+.++.++..+. .+..+ .++|.+|.+ +.++.++ .+|+++++|+++.
T Consensus 261 -~~------l~~-g~l~~~-~~~~~~~a~~~l~~~~l---~i~d~--~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 261 -QN------LRT-GKLTPE-DWGKLTMAMGSLSNAGI---YIDDT--PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp -HH------HHT-SCCCHH-HHHHHHHHHHHHHSSCE---EEECC--TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred -HH------Hhc-CCCCHH-HHHHHHHHHHHHhcCCE---EEECC--CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 00 111 112222 23344555555543332 12111 258999987 5667666 6899999999998
Q ss_pred CCCH--------HHHHHHHHHHHHHHHc-CCEEEEEec---------C--CCH-------HHHHHhcceeEEec
Q 001048 755 GLDA--------RAAATVMRAVKNVVET-GRTVVCTIH---------Q--PSI-------DIFEAFDDLVLMKN 801 (1174)
Q Consensus 755 gLD~--------~~~~~i~~~l~~l~~~-g~tvi~~~H---------~--~~~-------~~~~~~d~~~~l~~ 801 (1174)
..++ .....+.+.|++++++ |.+||+++| + |.. .+...+|.++++.+
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 7742 3346677888888765 999999999 2 431 35567888888865
No 214
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.61 E-value=4e-11 Score=129.68 Aligned_cols=184 Identities=12% Similarity=0.048 Sum_probs=65.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHh-CCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS-GRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 677 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~-g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~ 677 (1174)
.+..+++||++++|++++|+||||||||||+++|+ |..+ +..+.+.+...+..... ....+|.+++...+..+++.
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~--~~~~~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~~ 90 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN--NIVKSVSVTTRAARKGE-KEGKDYYFVDREEFLRLCSN 90 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC------CEEECCCEESSCCCTTC-CBTTTBEECCHHHHHHHHHT
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC--CcccccccCCCCCCccc-cCCCeEEEecHHHhhhhhhc
Confidence 46789999999999999999999999999999999 9764 22222222111111100 11123555543222222222
Q ss_pred HHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHH-HHH-HHhhcCCcEEEEeCCCC
Q 001048 678 ESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRL-TIA-VELVANPSIIFMDEPTS 754 (1174)
Q Consensus 678 e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv-~ia-~al~~~p~illlDEPts 754 (1174)
+++......... ..... +.+++.++. +..-..|... . -...-++++ .-+ ..++..|+...+||+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~----~~i~~~~~~-~~~vild~~~-----~-g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~ 159 (231)
T 3lnc_A 91 GEIIEHAEVFGNFYGVPR----KNLEDNVDK-GVSTLLVIDW-----Q-GAFKFMEMMREHVVSIFIMPPSMEELRRRLC 159 (231)
T ss_dssp TCEEEEEEETTEEEEEEC----TTHHHHHHH-TCEEEEECCH-----H-HHHHHHHHSGGGEEEEEEECSCHHHHHHC--
T ss_pred CceehhhhhccccCCCCH----HHHHHHHHc-CCeEEEEcCH-----H-HHHHHHHhcCCCeEEEEEECCcHHHHHHHHH
Confidence 111100000000 00001 113333332 1111111100 0 011223333 111 23466778888899999
Q ss_pred CCCHHHHHHHHHHHHHHHH-----cCCEEEEEecCCCHHHHHHhccee
Q 001048 755 GLDARAAATVMRAVKNVVE-----TGRTVVCTIHQPSIDIFEAFDDLV 797 (1174)
Q Consensus 755 gLD~~~~~~i~~~l~~l~~-----~g~tvi~~~H~~~~~~~~~~d~~~ 797 (1174)
+.|..+...+.+.|++... +...++++.|+++ +..+..++++
T Consensus 160 ~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e-~~~~~l~~~i 206 (231)
T 3lnc_A 160 GRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIE-ETADRISNIL 206 (231)
T ss_dssp ------------CHHHHHHHHTTGGGSSEEEECSSHH-HHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHH-HHHHHHHHHH
Confidence 9998888888777765432 1345666666543 3444444443
No 215
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.56 E-value=4.9e-11 Score=132.87 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=81.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccceEEEEccCCC-CCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFARISGYCEQNDI-HSPNI 674 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~Q~~~-~~~~l 674 (1174)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.++... ...+.+++++|+.. ..+.+
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 46899999999999 89999999999999999999764 47788887653211 11233566777642 45667
Q ss_pred CHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcE
Q 001048 675 TVEESIVFSAWLRLST-QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSI 746 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~i 746 (1174)
++.|++......+... .....+..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 7888875332111000 000112222232222 14899999999999999999986
No 216
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.53 E-value=7.3e-11 Score=129.62 Aligned_cols=128 Identities=19% Similarity=0.206 Sum_probs=82.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccceEEEEccCC-CCCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFARISGYCEQND-IHSPNI 674 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~Q~~-~~~~~l 674 (1174)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|+. ...+.+
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 46899999999999 99999999999999999999764 46788887653211 1123345667653 245667
Q ss_pred CHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCC
Q 001048 675 TVEESIVFSAWLRLST-QIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 752 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 752 (1174)
++.|++......+... .....+..+.+++++. .|||||+||+.|++++..+|++ +|++
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 7777774322111100 0011122222333321 3889999999999999999987 4543
No 217
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.51 E-value=1.4e-08 Score=106.14 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001048 731 RKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN 770 (1174)
Q Consensus 731 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 770 (1174)
.+.+.+|++++.+|+++++| ||++|..+..++.+.|.+
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 34578899999999999999 999999999999988865
No 218
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.51 E-value=8.9e-08 Score=109.40 Aligned_cols=78 Identities=18% Similarity=0.134 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcC--CcEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HHcCCEEEEEecCCCH-----
Q 001048 732 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAATVMRAVKNV----VETGRTVVCTIHQPSI----- 787 (1174)
Q Consensus 732 qRv~ia~al~~~--p~illlDEPtsgL----------D~---~~~~~i~~~l~~l----~~~g~tvi~~~H~~~~----- 787 (1174)
+-+.++++++.+ |+++++|||++.+ |+ ..++.+.+.++++ .+.|.|||+++|-.+.
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888765 9999999999998 33 2223445555555 3459999999996431
Q ss_pred ----------HHHHHhcceeEEecCcEEEEEcC
Q 001048 788 ----------DIFEAFDDLVLMKNGGRIIYFGP 810 (1174)
Q Consensus 788 ----------~~~~~~d~~~~l~~~G~~v~~G~ 810 (1174)
.+...+|.++.+.+ ++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 13445666666654 56655554
No 219
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.50 E-value=9e-08 Score=121.73 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=74.7
Q ss_pred CcccCCccccchhHHHHHH--hcCCcEeeeeCCCCCcChHHHHHH-HHHHHHHhHhCCCEEEEEecCCChhHHhhhhhee
Q 001048 57 MRRGVSGGQKKRLTTGELI--VGPTRALFMDEISNGLDSSTTFQI-VSFLKHLVHITDATALISLLQPAPETFDLFDDVI 133 (1174)
Q Consensus 57 ~~rGLSGGqKkRvSIA~aL--v~~P~IL~LDEPTSGLDS~sa~~v-~~~L~~la~~~~~tvI~sihQps~~i~~lfD~Ii 133 (1174)
..+++|+|++++..+|..| +++|++++|||||+|||+.....+ +..++.+.+..|.|+|++.|. .++.+++|++.
T Consensus 718 l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~--~el~~lad~~~ 795 (934)
T 3thx_A 718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF--HELTALANQIP 795 (934)
T ss_dssp -----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC--GGGGGGGGTCT
T ss_pred HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc--HHHHHHhcccc
Confidence 3467999999999999888 999999999999999999999888 777888876568899998887 56778999999
Q ss_pred eecCCcEEEeCCcch
Q 001048 134 LMAEGKIVYHGPLSY 148 (1174)
Q Consensus 134 vL~~G~vvy~G~~~~ 148 (1174)
.+.+|++.+.|+.++
T Consensus 796 ~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 796 TVNNLHVTALTTEET 810 (934)
T ss_dssp TEEEEEEEEEEETTE
T ss_pred eeEeeEEEEEecCCc
Confidence 999999998886544
No 220
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.49 E-value=1.1e-08 Score=120.40 Aligned_cols=52 Identities=21% Similarity=0.115 Sum_probs=47.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 653 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 653 (1174)
..+|+|+|+++++ |+++|+|||||||||||++|+|..+ +.+|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 4689999999999 9999999999999999999999876 45899999998754
No 221
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.46 E-value=7.2e-09 Score=109.46 Aligned_cols=65 Identities=18% Similarity=0.168 Sum_probs=42.6
Q ss_pred eeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccceEEEEccCCCCCCCCCH
Q 001048 606 TGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFARISGYCEQNDIHSPNITV 676 (1174)
Q Consensus 606 s~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~Q~~~~~~~lTv 676 (1174)
|+++++|++++|+||||||||||+++|+|..+ .+.+++...... ..++.++|++|++..++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVK 68 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHh
Confidence 56788999999999999999999999999753 345555443221 123456888887544443333
No 222
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.45 E-value=1e-07 Score=106.41 Aligned_cols=141 Identities=14% Similarity=0.152 Sum_probs=83.9
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhccC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWLRLS 689 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~~~~ 689 (1174)
++|++++++||||+||||+++.|++.... .+| +.+.++.++.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 47999999999999999999999986541 123 23466666542 345556554322
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 001048 690 TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVK 769 (1174)
Q Consensus 690 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~ 769 (1174)
+..++... . ..+. +.-+.+|++ +.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----~------~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----V------CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----B------CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----e------cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 11222211 0 1122 334556664 4999999999 99999877655555444
Q ss_pred HHH---HcCCEEEE-EecCCCHHHHHHhcceeEEecCcEEEEE
Q 001048 770 NVV---ETGRTVVC-TIHQPSIDIFEAFDDLVLMKNGGRIIYF 808 (1174)
Q Consensus 770 ~l~---~~g~tvi~-~~H~~~~~~~~~~d~~~~l~~~G~~v~~ 808 (1174)
-+. ..+.++++ ++|..+ ++.+.+++...+. -+.++..
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~-~~giVlt 247 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVP-VNQYIFT 247 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSC-CCEEEEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCC-CCEEEEe
Confidence 332 12334444 478643 5666666655444 3556653
No 223
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.44 E-value=3.7e-09 Score=130.59 Aligned_cols=160 Identities=13% Similarity=0.108 Sum_probs=97.0
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCC--------
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDI-------- 669 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~-------- 669 (1174)
...+++++++.+++|+.++|+||||+|||||+++|++..... ..|.+.+++.+... ....++++++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHH
Confidence 457899999999999999999999999999999999977532 24788888876532 3345788876421
Q ss_pred --------------CCCCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHH
Q 001048 670 --------------HSPNITVEESIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLT 735 (1174)
Q Consensus 670 --------------~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ 735 (1174)
.+..+++.+|+.....-..+...-. .......+ .+|..+..... ..++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~~~~~~---L~G~~~~~~~~-----~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATGAHAGA---LLGDVRHDPFQ-----SGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CTTCCHHH---HHCEECCCCC---------CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEE-cCCCCHHh---cCceEEechhh-----cCCcccccccccc
Confidence 0111111111110000000000000 00000111 11211111111 1359999999999
Q ss_pred HHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001048 736 IAVELVANPSIIFMDEPTSGLDARAAATVMRAVKN 770 (1174)
Q Consensus 736 ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 770 (1174)
.++....++.+|+|||... |++.....+.+.|++
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 898888877777764
No 224
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.43 E-value=9.5e-08 Score=108.41 Aligned_cols=69 Identities=12% Similarity=0.128 Sum_probs=58.6
Q ss_pred ccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEE
Q 001048 63 GGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIV 141 (1174)
Q Consensus 63 GGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vv 141 (1174)
||||||++||++|..+|++|+|||||+. ++++.|+.+.. .+.|++++.|.++ +.+.+||+++|.+|+..
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~-g~~tvi~t~H~~~--~~~~~dri~~l~~g~~~ 293 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS-GHKGTLTTLHAGS--SEEAFIRLANMSSSNSA 293 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT-TCCCEEEEEECSS--HHHHHHHHHHHHHTSGG
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc-CCCEEEEEEcccH--HHHHhhhheehhcCCcc
Confidence 8999999999999999999999999982 46777887653 3457899999877 78899999999988743
No 225
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.37 E-value=3.5e-07 Score=102.51 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=61.6
Q ss_pred CCccc-cchhHHHHHHhcCCcEeeeeCCCC---C---cCh-HHHHHHHHHHHHHhHhCCCEEEEEecCCC-h--------
Q 001048 61 VSGGQ-KKRLTTGELIVGPTRALFMDEISN---G---LDS-STTFQIVSFLKHLVHITDATALISLLQPA-P-------- 123 (1174)
Q Consensus 61 LSGGq-KkRvSIA~aLv~~P~IL~LDEPTS---G---LDS-~sa~~v~~~L~~la~~~~~tvI~sihQps-~-------- 123 (1174)
+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|+++++..|.|||++.|..+ .
T Consensus 130 ~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~ 208 (296)
T 1cr0_A 130 AETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEG 208 (296)
T ss_dssp CCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------
T ss_pred CCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccC
Confidence 78888 67777 999999999999999999 5 455 66688999999999877999999877753 3
Q ss_pred ------------hHHhhhhheeeecCCcE
Q 001048 124 ------------ETFDLFDDVILMAEGKI 140 (1174)
Q Consensus 124 ------------~i~~lfD~IivL~~G~v 140 (1174)
++...+|+|++|.+|+.
T Consensus 209 ~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 209 RPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67789999999998874
No 226
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.21 E-value=9.9e-07 Score=104.38 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HcCCEEEEEecCCC
Q 001048 728 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAATVMRAVKNVV----ETGRTVVCTIHQPS 786 (1174)
Q Consensus 728 gGqrqRv~ia~al~~~p~illlDEP----------tsgLD~~~~~~i~~~l~~l~----~~g~tvi~~~H~~~ 786 (1174)
|++++|-.++++....|.||++||+ ++|.|......+.++|..+- +.+..||.+||+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44677777777777777663 24778999999874
No 227
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.15 E-value=1.1e-06 Score=92.24 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=32.4
Q ss_pred HHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001048 734 LTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVV 772 (1174)
Q Consensus 734 v~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~ 772 (1174)
...|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887653
No 228
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.15 E-value=5.4e-07 Score=102.47 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=27.2
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+-+++|+++.|.||||||||||+..+++..
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999998753
No 229
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.13 E-value=5.1e-07 Score=114.46 Aligned_cols=81 Identities=10% Similarity=0.115 Sum_probs=65.4
Q ss_pred ccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHH-HHHHHHhHhCCCEEEEEecCCChhHHhhhhheee-ec
Q 001048 59 RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIV-SFLKHLVHITDATALISLLQPAPETFDLFDDVIL-MA 136 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~-~~L~~la~~~~~tvI~sihQps~~i~~lfD~Iiv-L~ 136 (1174)
..+|+|++|++.|+++ +++|++++|||||+|||+.....+. ..++.+++..|.|+|++.|.+ +..+++|+.-- +.
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v~ 810 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQVG 810 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTEE
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccceE
Confidence 3478999999999988 8999999999999999999998886 778888765688999998875 56678887642 44
Q ss_pred CCcEEE
Q 001048 137 EGKIVY 142 (1174)
Q Consensus 137 ~G~vvy 142 (1174)
.+++-+
T Consensus 811 n~~~~~ 816 (918)
T 3thx_B 811 NYHMGF 816 (918)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 445443
No 230
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.12 E-value=1.9e-06 Score=98.99 Aligned_cols=148 Identities=16% Similarity=0.175 Sum_probs=86.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCCC---------CeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH---HHH
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRKTG---------GIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE---SIV 681 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~~~---------~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e---~l~ 681 (1174)
.++|+|++|||||||+|.|+|.... ++..|.+.++|.++. .....|++.+.+ ...|.. .+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHHHHHHHHH
Confidence 4899999999999999999996431 145789999886532 112235544422 112211 111
Q ss_pred HHH--h--hc-cC-CCCC--HHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHH----HHh-hcCCcEEE
Q 001048 682 FSA--W--LR-LS-TQID--SKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIA----VEL-VANPSIIF 748 (1174)
Q Consensus 682 ~~~--~--~~-~~-~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia----~al-~~~p~ill 748 (1174)
... . +. .. .... ..+..+.+.++++.+++.+..--.+.+. ...+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 100 0 00 00 1111 1222334567788777655431122221 123788888988887 555 444554
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHH
Q 001048 749 MDEPTSGLDARAAATVMRAVKNVVE 773 (1174)
Q Consensus 749 lDEPtsgLD~~~~~~i~~~l~~l~~ 773 (1174)
+|+|++|......+.+.|.++..
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999987654
No 231
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.11 E-value=5.9e-08 Score=103.44 Aligned_cols=59 Identities=19% Similarity=0.129 Sum_probs=39.0
Q ss_pred eeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc-----------cccceEEEEccC
Q 001048 606 TGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-----------TFARISGYCEQN 667 (1174)
Q Consensus 606 s~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-----------~~~~~~~~v~Q~ 667 (1174)
++++.+ ++++|+|||||||||||++|+|... +.+|+|.++|.++... ..++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456666 8999999999999999999999776 4478999988765211 124557888873
No 232
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.07 E-value=2.8e-06 Score=94.29 Aligned_cols=80 Identities=8% Similarity=0.045 Sum_probs=64.4
Q ss_pred HHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCC--CcChHHH---HHHHHHHHHHhHh
Q 001048 35 QTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISN--GLDSSTT---FQIVSFLKHLVHI 109 (1174)
Q Consensus 35 ~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTS--GLDS~sa---~~v~~~L~~la~~ 109 (1174)
.++++++.+++.+..+..+.. +|+||++|+ ++++.+|+++++||||+ ++|..+. .++++.|+++++.
T Consensus 98 ~~~~~~~~l~l~~~~~~~~~~-----ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~ 169 (279)
T 1nlf_A 98 ERQAVADGLLIQPLIGSLPNI-----MAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD 169 (279)
T ss_dssp HHHHHHHHEEECCCTTSCCCT-----TSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccCceEEeecCCCCccc-----CCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHH
Confidence 457788999988876665543 999998765 68889999999999999 9998655 8888999999877
Q ss_pred CCCEEEEEecCCC
Q 001048 110 TDATALISLLQPA 122 (1174)
Q Consensus 110 ~~~tvI~sihQps 122 (1174)
.|.|||++.|...
T Consensus 170 ~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 170 TGCSIVFLHHASK 182 (279)
T ss_dssp HCCEEEEEEEC--
T ss_pred cCCEEEEEecCCC
Confidence 7899998766553
No 233
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.04 E-value=1.4e-07 Score=99.23 Aligned_cols=41 Identities=29% Similarity=0.239 Sum_probs=31.7
Q ss_pred eeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 606 TGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 606 s~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
....++|++++|+||||||||||+++|+|.. |.+.++|.++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~ 63 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAF 63 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEccccc
Confidence 3566789999999999999999999999854 6678887664
No 234
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.01 E-value=7.3e-06 Score=103.50 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEE-ecCCCHHHHHHhcceeEEecC
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAATVMRAVKNVVETGRTVVCT-IHQPSIDIFEAFDDLVLMKNG 802 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~-~H~~~~~~~~~~d~~~~l~~~ 802 (1174)
-+|+|+.+|..+++.++.+++++++|||.. +||......+++.+.+.....++++++ ||+++ .+.+.+++..++.-.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi~v~ 268 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLLAVP 268 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEEECC
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCccccc
Confidence 489999999999999999999999999996 999887777766666554445677775 88753 566677654444333
Q ss_pred c
Q 001048 803 G 803 (1174)
Q Consensus 803 G 803 (1174)
|
T Consensus 269 g 269 (773)
T 2xau_A 269 G 269 (773)
T ss_dssp C
T ss_pred C
Confidence 4
No 235
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.96 E-value=2.6e-07 Score=97.80 Aligned_cols=80 Identities=10% Similarity=0.045 Sum_probs=64.3
Q ss_pred HHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCc----ChHHHHHHHHHHHHHhHhCCCEEE
Q 001048 40 LKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGL----DSSTTFQIVSFLKHLVHITDATAL 115 (1174)
Q Consensus 40 l~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGL----DS~sa~~v~~~L~~la~~~~~tvI 115 (1174)
++.+||.+.++...+. || +|+.+|++++|||||+|| |+..+.++++.++++.+..|.|+|
T Consensus 119 l~~~gl~~~~~~~~~~-----lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi 182 (207)
T 1znw_A 119 VDLAGARAIKKTMPEA-----VT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKV 182 (207)
T ss_dssp CCHHHHHHHHHHCTTS-----EE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEE
T ss_pred eCHHHHHHHHHhcCCc-----EE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEE
Confidence 5666776666666543 66 899999999999999998 778999999999999865678888
Q ss_pred EEecCCChhHHhhhhheeeec
Q 001048 116 ISLLQPAPETFDLFDDVILMA 136 (1174)
Q Consensus 116 ~sihQps~~i~~lfD~IivL~ 136 (1174)
++.| -..++.+.+|+|++|.
T Consensus 183 ~vtH-dl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 183 VVNR-RLESACAELVSLLVGT 202 (207)
T ss_dssp EECS-SHHHHHHHHHHHHC--
T ss_pred EECC-CHHHHHHHHHHHHHhc
Confidence 8765 4568889999999995
No 236
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.95 E-value=5.1e-06 Score=107.14 Aligned_cols=83 Identities=12% Similarity=0.065 Sum_probs=63.9
Q ss_pred CCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHH-HHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCc
Q 001048 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT-FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGK 139 (1174)
Q Consensus 61 LSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa-~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~ 139 (1174)
.|+|++ +++++++++++|++++|||||+|+|+... ..+++.|+.+++..|.++|++.|.+. .+-..+|++.++ +|+
T Consensus 852 f~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g~ 928 (1022)
T 2o8b_B 852 FFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LGH 928 (1022)
T ss_dssp HHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EEE
T ss_pred hHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cCe
Confidence 566655 59999999999999999999999999984 55789999998655889999887653 344568998887 588
Q ss_pred EE--EeCCc
Q 001048 140 IV--YHGPL 146 (1174)
Q Consensus 140 vv--y~G~~ 146 (1174)
+. +.|+.
T Consensus 929 ~~~~~~~~~ 937 (1022)
T 2o8b_B 929 MACMVENEC 937 (1022)
T ss_dssp EEEC-----
T ss_pred EEEEEecCc
Confidence 87 55654
No 237
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.95 E-value=5.4e-06 Score=88.91 Aligned_cols=79 Identities=11% Similarity=0.008 Sum_probs=65.6
Q ss_pred CCccccchhHHHHHHhcCCc--EeeeeCCCCCc--ChHHHHHHHHHHHHHhHhCCCEEEEEecCCC-------hhHHhhh
Q 001048 61 VSGGQKKRLTTGELIVGPTR--ALFMDEISNGL--DSSTTFQIVSFLKHLVHITDATALISLLQPA-------PETFDLF 129 (1174)
Q Consensus 61 LSGGqKkRvSIA~aLv~~P~--IL~LDEPTSGL--DS~sa~~v~~~L~~la~~~~~tvI~sihQps-------~~i~~lf 129 (1174)
.|++|+++...+.....+|+ ++++||||+++ |+.....+++.|+++++..|.|+|++.|..+ ..+.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~ 183 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVA 183 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHC
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheee
Confidence 58899888888777778999 99999999888 9999999999999998777889999888773 4578889
Q ss_pred hheeeecCCc
Q 001048 130 DDVILMAEGK 139 (1174)
Q Consensus 130 D~IivL~~G~ 139 (1174)
|+|++|.+.+
T Consensus 184 d~vi~l~~~~ 193 (235)
T 2w0m_A 184 DGIIRFRRMI 193 (235)
T ss_dssp SEEEEEEEEE
T ss_pred eEEEEEEEEe
Confidence 9999997653
No 238
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.94 E-value=4.2e-06 Score=94.40 Aligned_cols=129 Identities=16% Similarity=0.179 Sum_probs=82.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHH
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEES 679 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~ 679 (1174)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++.... . .| ..+.|+.= .++..+.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a--~-------~g---------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL--N-------DD---------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH--H-------TT---------CEEEEEES------SSCHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--H-------cC---------CeEEEEeC------CCCHHHH
Confidence 45677777899999999999999999999988875321 0 11 12234321 2333332
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHH
Q 001048 680 IVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 759 (1174)
Q Consensus 680 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~ 759 (1174)
. .+.......+++.+..+ | .||.+|.+|++.|...+.++++.+.|+|...
T Consensus 90 ~------------------~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s---- 139 (338)
T 4a1f_A 90 A------------------LRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR---- 139 (338)
T ss_dssp H------------------HHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC----
T ss_pred H------------------HHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc----
Confidence 1 11111111122211111 2 4999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHHHc--CCEEEEEec
Q 001048 760 AAATVMRAVKNVVET--GRTVVCTIH 783 (1174)
Q Consensus 760 ~~~~i~~~l~~l~~~--g~tvi~~~H 783 (1174)
...+...+++++++ |..+|++-|
T Consensus 140 -i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 140 -IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp -HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 33666677777644 677777754
No 239
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.93 E-value=1e-05 Score=85.86 Aligned_cols=78 Identities=8% Similarity=0.017 Sum_probs=61.6
Q ss_pred CCccc--cchhHHHHHHhcC-CcEeeeeCCCCCcChHHH--------HHHHHHHHHHhHhCCCEEEEEecCCCh------
Q 001048 61 VSGGQ--KKRLTTGELIVGP-TRALFMDEISNGLDSSTT--------FQIVSFLKHLVHITDATALISLLQPAP------ 123 (1174)
Q Consensus 61 LSGGq--KkRvSIA~aLv~~-P~IL~LDEPTSGLDS~sa--------~~v~~~L~~la~~~~~tvI~sihQps~------ 123 (1174)
.|+++ +++++.+++++.+ |+++++||||+++|+... ..+++.|+++++..+.|+|++-|..+.
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 56665 5678888899985 999999999999998542 456777888887778899887776542
Q ss_pred ------hHHhhhhheeeecCC
Q 001048 124 ------ETFDLFDDVILMAEG 138 (1174)
Q Consensus 124 ------~i~~lfD~IivL~~G 138 (1174)
.+...+|++++|.+.
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 567789999999765
No 240
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.92 E-value=1.8e-05 Score=91.06 Aligned_cols=60 Identities=12% Similarity=0.190 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--cCCC
Q 001048 725 GLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAATVMRAVKNVVETGRTVVCTI--HQPS 786 (1174)
Q Consensus 725 ~LSgGqrqRv~ia~al~~~p~illlD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~--H~~~ 786 (1174)
.+|+||+|++. +.+...++-++++| +|++|+|......+.+.+.+... +..+|++. ||..
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 58999999887 66666778889999 99999999998888877776543 77888888 7653
No 241
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.89 E-value=1.9e-06 Score=94.70 Aligned_cols=60 Identities=17% Similarity=0.303 Sum_probs=47.2
Q ss_pred cccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEec
Q 001048 46 DICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLL 119 (1174)
Q Consensus 46 ~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sih 119 (1174)
.+..+.+.++ ||||||||++|||+++. +++|||||+|||+.. .+.++.+.+. .++|+.+|
T Consensus 89 ~~~~~~~~~~-----LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~Vi~ 148 (270)
T 3sop_A 89 EQYEKFLKEE-----VNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIPVIA 148 (270)
T ss_dssp HHHHHHHHHH-----SCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEEEET
T ss_pred HHHHhhhHHh-----cCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEEEEe
Confidence 5566777655 99999999999999885 999999999999987 4555555543 67777664
No 242
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.89 E-value=3.4e-07 Score=97.68 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=54.2
Q ss_pred hHHHHHHHHhCCcccccccccCCCcccCCccccchhHH-----HHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhH
Q 001048 34 LQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTT-----GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVH 108 (1174)
Q Consensus 34 ~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSI-----A~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~ 108 (1174)
..++++++...+ ..+. ..+|||||||++| +++++.+|+++.|||||+++|..++..+.+.|+++..
T Consensus 105 ~~i~~~l~~~~~-----~il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 105 SEYDKAKEQNKI-----CLFE----MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHHTTCE-----EEEE----ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCc-----EEEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 356777776433 2221 3499999999999 8999999999999999999999999999999987654
No 243
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.88 E-value=9.1e-08 Score=113.92 Aligned_cols=129 Identities=19% Similarity=0.199 Sum_probs=81.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCccc---ccceEEEEccCCC-CCCCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT---FARISGYCEQNDI-HSPNI 674 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~---~~~~~~~v~Q~~~-~~~~l 674 (1174)
..+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+..... ..+.+..++|+.. ..+..
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 46789999999999 89999999999999999999654 367788886543211 1122345565532 33445
Q ss_pred CHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCC
Q 001048 675 TVEESIVFSAWLRLS-TQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 753 (1174)
Q Consensus 675 Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 753 (1174)
.+.|++.....-+.. ......+..+.+++++. .|||||+|+..|+++...+|++ |||+.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 555555321110100 00012223333444432 3788888898999999999987 78875
No 244
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.87 E-value=1.8e-06 Score=97.04 Aligned_cols=55 Identities=7% Similarity=-0.075 Sum_probs=48.0
Q ss_pred hhHHHHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcCh
Q 001048 33 SLQTDYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDS 93 (1174)
Q Consensus 33 ~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS 93 (1174)
.+.++++|+.++ .+..++.+.. +|||||||++||++++.+|+||+||||++.+|+
T Consensus 155 ~~~~~~~L~~l~-~~~~~~~~~~-----lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 155 RRALMRFVTSVK-SGSDYACAPV-----YSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp HHHHHHHHHHHH-TTCSCEEEEE-----EETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHHHHHHHHHhC-CCcccCCccc-----CChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 356788999998 6656676644 999999999999999999999999999999986
No 245
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.85 E-value=1.6e-06 Score=94.04 Aligned_cols=52 Identities=25% Similarity=0.359 Sum_probs=35.8
Q ss_pred EEEEece-EEEEeeCCcccccccccccccccccceeEEeC---CeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 573 TVTFEDL-RYYVDIPSAMRKNGFNQTRLQLLSDITGTFRP---GILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 573 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++++|+ ++.+. +++.+|+|+|+++++ |+.++|+|++||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4788888 76431 235799999999999 9999999999999999999999854
No 246
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.77 E-value=6.9e-06 Score=86.41 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=26.5
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
++++|++++|+|||||||||++++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 678999999999999999999999999874
No 247
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.77 E-value=9.9e-06 Score=90.47 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=62.4
Q ss_pred HHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCc--EeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEE
Q 001048 39 ILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTR--ALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALI 116 (1174)
Q Consensus 39 vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~--IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~ 116 (1174)
+++.+|+.+..+..+++ || |||++||++|+.+|+ +|+|| ||+|||+.+.. ++..+..|.|+|+
T Consensus 188 lldt~gl~~~~~~~~~e-----LS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~ii 252 (302)
T 3b9q_A 188 LCDTSGRLHTNYSLMEE-----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI 252 (302)
T ss_dssp EECCCCCSSCCHHHHHH-----HH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE
T ss_pred HHhcCCCCcchhHHHHH-----HH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEE
Confidence 56778888877777765 99 999999999999999 99999 99999998652 4444445777777
Q ss_pred EecCCC----hhHHhh----hhheeeecCCcE
Q 001048 117 SLLQPA----PETFDL----FDDVILMAEGKI 140 (1174)
Q Consensus 117 sihQps----~~i~~l----fD~IivL~~G~v 140 (1174)
..|-.. ...+.. .+.|..+..|+.
T Consensus 253 iThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 253 LTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 667322 113332 335566666654
No 248
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.76 E-value=7e-06 Score=84.57 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=32.5
Q ss_pred ccc--ccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 600 QLL--SDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 600 ~iL--~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
..+ +++++++.+| +++|+||||||||||+++|.+...
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 355 7899999999 999999999999999999988543
No 249
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.74 E-value=4e-06 Score=94.42 Aligned_cols=49 Identities=20% Similarity=0.137 Sum_probs=40.9
Q ss_pred cccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 602 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 602 L~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
++++++++++|++++++|+||+||||++..|++... +..|+|.+.+.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCC
Confidence 478999999999999999999999999999999654 2357888877654
No 250
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.73 E-value=2e-06 Score=93.92 Aligned_cols=63 Identities=21% Similarity=0.115 Sum_probs=45.7
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHh---CCCCCCeEEEEEE--------ECCeeCCc----ccccceEEEEc
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLS---GRKTGGIIEGDIR--------IGGYPKVQ----HTFARISGYCE 665 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~---g~~~~~~~~G~i~--------~~g~~~~~----~~~~~~~~~v~ 665 (1174)
++++.+ ++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ...++.+++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 444443 789999999999999999999999 8765 5678888 88877632 12445678888
Q ss_pred cCC
Q 001048 666 QND 668 (1174)
Q Consensus 666 Q~~ 668 (1174)
|++
T Consensus 94 ~~~ 96 (252)
T 4e22_A 94 VSQ 96 (252)
T ss_dssp EEE
T ss_pred ecC
Confidence 643
No 251
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.72 E-value=1.1e-05 Score=84.46 Aligned_cols=39 Identities=23% Similarity=0.106 Sum_probs=24.5
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
...+++|||+++++|++++|+|++||||||+.+.|++..
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999999999999999999754
No 252
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.69 E-value=1.8e-05 Score=90.35 Aligned_cols=110 Identities=18% Similarity=0.191 Sum_probs=68.2
Q ss_pred hHHHHHHHHhCCcccccccccCC-Cccc-CCccccchhHHHHHHh-------cCCcEeeeeCCCCCcChHH---------
Q 001048 34 LQTDYILKILGLDICADTMVGDP-MRRG-VSGGQKKRLTTGELIV-------GPTRALFMDEISNGLDSST--------- 95 (1174)
Q Consensus 34 ~~v~~vl~~lgL~~~~dT~VG~~-~~rG-LSGGqKkRvSIA~aLv-------~~P~IL~LDEPTSGLDS~s--------- 95 (1174)
+++..+.+.+++... +...+- ..+. =|++|++++.++++++ .+|+++++||||++||+..
T Consensus 180 ~~i~~i~q~~~~~~~--~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r 257 (349)
T 1pzn_A 180 ERIREIAQNRGLDPD--EVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAER 257 (349)
T ss_dssp HHHHHHHHTTTCCHH--HHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHH
T ss_pred HHHHHHHHHcCCCHH--HHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHH
Confidence 355667777776531 211110 0011 2678999999999999 6899999999999999852
Q ss_pred ---HHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCc
Q 001048 96 ---TFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPL 146 (1174)
Q Consensus 96 ---a~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~ 146 (1174)
..++++.|+++++..+.|+|++-|.. ...-..|++...+..|+++.+++.
T Consensus 258 ~~~~~~~l~~L~~la~~~~~tvii~~h~~-~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 258 QQKLAKHLADLHRLANLYDIAVFVTNQVQ-ARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTCS
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEcccc-cccccccCCccccCCcceEeecCc
Confidence 35677778888877789999876643 344456677888889999888864
No 253
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.69 E-value=8e-06 Score=101.44 Aligned_cols=133 Identities=14% Similarity=0.067 Sum_probs=72.7
Q ss_pred eeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcc---cccceEEEEccCCCCCCCCCHHHHHHH
Q 001048 606 TGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFARISGYCEQNDIHSPNITVEESIVF 682 (1174)
Q Consensus 606 s~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~Q~~~~~~~lTv~e~l~~ 682 (1174)
|+.+++|+.++|+|++|+|||||++.|++........|+| .+|...... ..++.+++..|...+... ++.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~----- 75 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHR----- 75 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEE-----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEE-----
Confidence 3467889999999999999999999999743321234666 455433211 112223333332211100 000
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHH
Q 001048 683 SAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 762 (1174)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~ 762 (1174)
.++.|+ ||...++ .......-..+..++++| |+.|+|+.+..
T Consensus 76 ----------------------------~nliDT----pG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 76 ----------------------------VFLLDA----PGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp ----------------------------EEEEEC----CCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred ----------------------------EEEEeC----CCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 011222 1111121 111222235678899999 99999988773
Q ss_pred HHHHHHHHHHHcCCEEEEEecCCCH
Q 001048 763 TVMRAVKNVVETGRTVVCTIHQPSI 787 (1174)
Q Consensus 763 ~i~~~l~~l~~~g~tvi~~~H~~~~ 787 (1174)
. ++.+.+.+.++|++.|..+.
T Consensus 118 ~----~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 118 A----WTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp H----HHHHHHTTCCEEEEEECGGG
T ss_pred H----HHHHHHccCCEEEEecCCch
Confidence 3 33333458888999998653
No 254
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.66 E-value=6.9e-05 Score=86.20 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEec
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETG-RTVVCTIH 783 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H 783 (1174)
.++.++++..+++..+.+|++++|.-..+..|..+ ....+.++.+...| +++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788899999999999999777774333445443 44556666665544 57777766
No 255
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.62 E-value=3.3e-06 Score=99.21 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=65.5
Q ss_pred ccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhH---hCCC-----EEEEEecCCChhHHhhhh
Q 001048 59 RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVH---ITDA-----TALISLLQPAPETFDLFD 130 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~---~~~~-----tvI~sihQps~~i~~lfD 130 (1174)
..+|||| |||+|| +++|++ |+|||+.++..+.+.|+++.+ ..|+ ||++.-|..+ ...+|
T Consensus 257 ~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad 323 (438)
T 2dpy_A 257 TRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIAD 323 (438)
T ss_dssp HHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHH
T ss_pred HHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhc
Confidence 4599999 999999 888887 999999999999999999875 2364 7776666665 57799
Q ss_pred heeeecCCcEEEeCCcchH
Q 001048 131 DVILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 131 ~IivL~~G~vvy~G~~~~~ 149 (1174)
++++|.+|+++..|++++.
T Consensus 324 ~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 324 SARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp HHHHHSSEEEEECHHHHHT
T ss_pred eEEEEeCcEEEEeCCHHHc
Confidence 9999999999999976543
No 256
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.61 E-value=1.3e-06 Score=92.63 Aligned_cols=82 Identities=9% Similarity=-0.059 Sum_probs=67.8
Q ss_pred hHHHHHHHHhCCcccccccccCCCcccCCccc----cchhHHHHHHhcCCcEeeeeCCCCC-------cChHHHHHHHHH
Q 001048 34 LQTDYILKILGLDICADTMVGDPMRRGVSGGQ----KKRLTTGELIVGPTRALFMDEISNG-------LDSSTTFQIVSF 102 (1174)
Q Consensus 34 ~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGq----KkRvSIA~aLv~~P~IL~LDEPTSG-------LDS~sa~~v~~~ 102 (1174)
+++.+.++.+++.+..+..+. .+|+|| +||++++++++.+|.++++||||++ ||+.++.++++.
T Consensus 68 ~~~~~~l~~~~~~~~~~~~~~-----~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~ 142 (211)
T 3asz_A 68 ALYLEHAQALLRGLPVEMPVY-----DFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR 142 (211)
T ss_dssp HHHHHHHHHHHTTCCEEECCE-----ETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCcc-----cCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence 457788999998876666543 388886 5799999999999999999999999 999999999999
Q ss_pred HHHHhHhCCCEEEEEecC
Q 001048 103 LKHLVHITDATALISLLQ 120 (1174)
Q Consensus 103 L~~la~~~~~tvI~sihQ 120 (1174)
+++..+..|+|++...|+
T Consensus 143 l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 143 LKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp HHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHH
Confidence 988655568887765564
No 257
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.61 E-value=1.4e-05 Score=82.85 Aligned_cols=85 Identities=13% Similarity=0.102 Sum_probs=59.1
Q ss_pred cccCCCcccCCccccchh-HHHH---HHhcCCcEeeeeC--CCCCcChHHHHHHHHHHHHHhHhCCCEEEE-Eec--CCC
Q 001048 52 MVGDPMRRGVSGGQKKRL-TTGE---LIVGPTRALFMDE--ISNGLDSSTTFQIVSFLKHLVHITDATALI-SLL--QPA 122 (1174)
Q Consensus 52 ~VG~~~~rGLSGGqKkRv-SIA~---aLv~~P~IL~LDE--PTSGLDS~sa~~v~~~L~~la~~~~~tvI~-sih--Qps 122 (1174)
.+|. ....+|||||+++ ++++ |+..+|+||+||| ||..+|......+.+.|+ . ..++|+ |++ |.+
T Consensus 76 ~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~ 149 (189)
T 2i3b_A 76 RVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGK 149 (189)
T ss_dssp ESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSS
T ss_pred ccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCC
Confidence 5554 2345999999998 4445 6899999999999 888888875554444444 2 334443 332 222
Q ss_pred hhHHhhhhheeeecCCcEEEeC
Q 001048 123 PETFDLFDDVILMAEGKIVYHG 144 (1174)
Q Consensus 123 ~~i~~lfD~IivL~~G~vvy~G 144 (1174)
+ ..+.|+|..+.+|++++-.
T Consensus 150 ~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 150 P--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp C--CTTHHHHHTTCCSEEEECC
T ss_pred c--hHHHHHHeecCCcEEEEeC
Confidence 2 5688999999999998855
No 258
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.54 E-value=4.1e-05 Score=87.20 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=53.0
Q ss_pred HHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCc--EeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEE
Q 001048 39 ILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTR--ALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALI 116 (1174)
Q Consensus 39 vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~--IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~ 116 (1174)
+++.+|+.+..+..+++ || |||++||++|+.+|+ +|+|| ||+|||+.+.. ++..+..+.|+|+
T Consensus 245 lldt~Gl~~~~~~~~~e-----LS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii 309 (359)
T 2og2_A 245 LCDTSGRLHTNYSLMEE-----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI 309 (359)
T ss_dssp EEECCCCSSCCHHHHHH-----HH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE
T ss_pred HHHhcCCChhhhhHHHH-----HH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE
Confidence 56678888877777755 99 999999999999999 99999 99999998653 3444445777777
Q ss_pred Eec
Q 001048 117 SLL 119 (1174)
Q Consensus 117 sih 119 (1174)
..|
T Consensus 310 iTh 312 (359)
T 2og2_A 310 LTK 312 (359)
T ss_dssp EES
T ss_pred Eec
Confidence 667
No 259
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.53 E-value=9.2e-06 Score=85.54 Aligned_cols=71 Identities=6% Similarity=0.034 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHH-HHHHhcceeEEe
Q 001048 726 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQPSID-IFEAFDDLVLMK 800 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~-~~~~~d~~~~l~ 800 (1174)
.+.|+.+|..+++.+..+|+.+.++ ++.++|.....+.+.++.. .+.++|+.+|..... ....+|.++++.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678889999999888888754333 3345565555555444332 356888888865321 134456555553
No 260
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.52 E-value=0.00015 Score=83.99 Aligned_cols=43 Identities=12% Similarity=0.052 Sum_probs=34.9
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEecCC
Q 001048 742 ANPSIIFMDEPTSGLDARAAATVMRAVKNVVE---TGRTVVCTIHQP 785 (1174)
Q Consensus 742 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~---~g~tvi~~~H~~ 785 (1174)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888887776655 578899999986
No 261
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.52 E-value=2.2e-05 Score=81.26 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=24.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
|++++|+||||||||||+++|+|..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999765
No 262
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.50 E-value=7.6e-05 Score=93.86 Aligned_cols=81 Identities=14% Similarity=0.022 Sum_probs=64.7
Q ss_pred CCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHH-HHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCc
Q 001048 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQI-VSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGK 139 (1174)
Q Consensus 61 LSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v-~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~ 139 (1174)
.|+|++ |++.+...+++|++++|||||+|+|+.....+ ++.++.+.+..|.++|++.|.+ +..+++|++..+..|+
T Consensus 670 f~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~ 746 (800)
T 1wb9_A 670 FMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVH 746 (800)
T ss_dssp CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEE
T ss_pred hhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEE
Confidence 455554 55555667999999999999999999887775 7888888764588999998886 4567899998888888
Q ss_pred EEEeC
Q 001048 140 IVYHG 144 (1174)
Q Consensus 140 vvy~G 144 (1174)
+.+..
T Consensus 747 ~~~~~ 751 (800)
T 1wb9_A 747 LDALE 751 (800)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77654
No 263
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.50 E-value=1.4e-05 Score=85.80 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=33.8
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
.+.++|++++|.|+||||||||+++|+|. .|+|.++++|.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 35578999999999999999999999986 25678877764
No 264
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.49 E-value=1.9e-05 Score=82.82 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=41.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEE--EECCeeC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDI--RIGGYPK 652 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i--~~~g~~~ 652 (1174)
....+..++..++|++++|+|||||||||++++|++... ..|.+ .++|.++
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 456677888889999999999999999999999998653 13555 7777554
No 265
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.48 E-value=4e-05 Score=78.78 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=28.9
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEE
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI 647 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~ 647 (1174)
+|++++|+||||||||||+++|++..+. ...|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeec
Confidence 6899999999999999999999996542 24455544
No 266
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.47 E-value=0.00039 Score=77.44 Aligned_cols=59 Identities=27% Similarity=0.334 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----cCCEEEEEecCC
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAATVMRAVKNVVE----TGRTVVCTIHQP 785 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~----------~~~~i~~~l~~l~~----~g~tvi~~~H~~ 785 (1174)
+++++.|..++.+...+|.+|++||+.+.++.. ....++..+..... .+..+|.+|++|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 456777777788888899999999998766532 22233333333221 235677888875
No 267
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.46 E-value=6.6e-06 Score=93.64 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=64.5
Q ss_pred ccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhH-hCCC-----EEEEEecCCChhHHhhhhhe
Q 001048 59 RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVH-ITDA-----TALISLLQPAPETFDLFDDV 132 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~-~~~~-----tvI~sihQps~~i~~lfD~I 132 (1174)
..+|+|| |||++| +++|++ |+|||+.....+.+.++++.+ ..|. ||+++-|... -..+|++
T Consensus 170 ~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v 236 (347)
T 2obl_A 170 TRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEV 236 (347)
T ss_dssp HHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHH
T ss_pred HHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhhe
Confidence 4499999 899999 688877 999999999999999999875 4576 6666666555 4669999
Q ss_pred eeecCCcEEEeCCcchH
Q 001048 133 ILMAEGKIVYHGPLSYS 149 (1174)
Q Consensus 133 ivL~~G~vvy~G~~~~~ 149 (1174)
++|.+|+++..|+.++.
T Consensus 237 ~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 237 RSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHCSEEEEBCHHHHTT
T ss_pred EEeeCcEEEEeCCHHHc
Confidence 99999999999976543
No 268
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.45 E-value=7.3e-05 Score=80.97 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=49.5
Q ss_pred HHHHhcCCcEeeeeCCCCCcC-----hHHHHHHHHHHHHHhHhCCCEEEEEecCCChh--------HHhhh-hheeeec
Q 001048 72 GELIVGPTRALFMDEISNGLD-----SSTTFQIVSFLKHLVHITDATALISLLQPAPE--------TFDLF-DDVILMA 136 (1174)
Q Consensus 72 A~aLv~~P~IL~LDEPTSGLD-----S~sa~~v~~~L~~la~~~~~tvI~sihQps~~--------i~~lf-D~IivL~ 136 (1174)
+..-..+|++++|||||++|| ...+..+.+.++.+.+ .|.|+|++.|..... +..++ |+|++|.
T Consensus 129 ~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 129 RVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 333357999999999999998 6666678888888865 589999988876654 25788 9999995
No 269
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.42 E-value=0.00024 Score=79.34 Aligned_cols=63 Identities=10% Similarity=0.108 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHhh--cCCcEEEEeCCCCCCCHHH-HHHHHHHHHHHHHc-CC--EEEEEecCCCHHHHHHhcce
Q 001048 726 LSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AATVMRAVKNVVET-GR--TVVCTIHQPSIDIFEAFDDL 796 (1174)
Q Consensus 726 LSgGqrqRv~ia~al~--~~p~illlDEPtsgLD~~~-~~~i~~~l~~l~~~-g~--tvi~~~H~~~~~~~~~~d~~ 796 (1174)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.+++|+-. .+.+.+|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHH
Confidence 899886 4566665 78999998 7899876 66777888888754 43 5556666543 455555544
No 270
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.41 E-value=5.9e-05 Score=94.30 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=51.1
Q ss_pred CcccCCccccchhHHHHHH--hcCCcEeeeeCC---CCCcChHHH-HHHHHHHHHHhHhCCCEEEEEecCCC
Q 001048 57 MRRGVSGGQKKRLTTGELI--VGPTRALFMDEI---SNGLDSSTT-FQIVSFLKHLVHITDATALISLLQPA 122 (1174)
Q Consensus 57 ~~rGLSGGqKkRvSIA~aL--v~~P~IL~LDEP---TSGLDS~sa-~~v~~~L~~la~~~~~tvI~sihQps 122 (1174)
...|+|+|+++++.+++++ +++|++++|||| ||+||..+. ..+++.|++ .|.|+|++.|.+.
T Consensus 632 l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 632 LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYFE 699 (765)
T ss_dssp ---CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCHH
T ss_pred HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCHH
Confidence 3467999999999999999 999999999999 999999875 577777765 3778998888653
No 271
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.40 E-value=2.7e-05 Score=89.39 Aligned_cols=143 Identities=12% Similarity=0.104 Sum_probs=77.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCC-CCCCCCHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDI-HSPNITVE 677 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~-~~~~lTv~ 677 (1174)
..+++++|+.+++|++++|+||||||||||+++|+|.. .|++...+.+. ......+|+++|... ++.+.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhHHHHHHHHHH
Confidence 46899999999999999999999999999999999853 35554412111 111112456666543 12222221
Q ss_pred HHHHHHHhhc-cCCCCCHHHHHHHHHHHHHH---cCCCC-cc---cccc--c--CCCCCCCCHHHHHHHHHHHHhhcCCc
Q 001048 678 ESIVFSAWLR-LSTQIDSKTKAEFVNEVLQT---IELDG-IK---DSLV--G--LPGVNGLSTEQRKRLTIAVELVANPS 745 (1174)
Q Consensus 678 e~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~---l~l~~-~~---~~~~--~--~~~~~~LSgGqrqRv~ia~al~~~p~ 745 (1174)
.++ .+ .... ........+...++. +.+.. .. +.+. + ......+++|++||+..+.+++.+|+
T Consensus 229 ~~~-----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pD 302 (377)
T 1svm_A 229 GGE-----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDY 302 (377)
T ss_dssp TTT-----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHH
T ss_pred HHH-----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCC
Confidence 110 00 0000 000001112233320 00110 00 0000 0 00123478999999988888888888
Q ss_pred EEE-EeCCCC
Q 001048 746 IIF-MDEPTS 754 (1174)
Q Consensus 746 ill-lDEPts 754 (1174)
+++ ||+|+.
T Consensus 303 LliyLd~~~~ 312 (377)
T 1svm_A 303 LKHCLERSEF 312 (377)
T ss_dssp HHHHHHTCTH
T ss_pred eEEEEeCCHH
Confidence 876 898886
No 272
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.35 E-value=0.00016 Score=78.99 Aligned_cols=62 Identities=13% Similarity=0.122 Sum_probs=50.7
Q ss_pred cchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecC
Q 001048 66 KKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAE 137 (1174)
Q Consensus 66 KkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~ 137 (1174)
.-|++||++|..+|++++||||| |..+...+ ++. +. .|.+++++.|.++ ..+.+||+++|..
T Consensus 86 ~l~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~-~~-~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 86 SFADALRAALREDPDVIFVGEMR---DLETVETA---LRA-AE-TGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp CHHHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHH-HH-TTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHH-Hc-cCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 34899999999999999999999 88886544 443 33 5889999999866 5788999999964
No 273
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.34 E-value=7.6e-05 Score=79.71 Aligned_cols=104 Identities=15% Similarity=0.163 Sum_probs=67.8
Q ss_pred hHHHHHHHHhCCcccccccccCC-CcccCCccc-cchhHHHHHHhc-------CCcEeeeeCCCCCcChH-------H--
Q 001048 34 LQTDYILKILGLDICADTMVGDP-MRRGVSGGQ-KKRLTTGELIVG-------PTRALFMDEISNGLDSS-------T-- 95 (1174)
Q Consensus 34 ~~v~~vl~~lgL~~~~dT~VG~~-~~rGLSGGq-KkRvSIA~aLv~-------~P~IL~LDEPTSGLDS~-------s-- 95 (1174)
+++..+.+.+++... |..-+- ..+..++++ ++++..+.+++. +|++++|||||++||+. +
T Consensus 74 ~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r 151 (231)
T 4a74_A 74 ERIREIAQNRGLDPD--EVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAER 151 (231)
T ss_dssp HHHHHHHHHTTSCHH--HHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHH
T ss_pred HHHHHHHHHcCCCHH--HHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHH
Confidence 356677777777632 211110 112345544 444667777776 99999999999999983 2
Q ss_pred ---HHHHHHHHHHHhHhCCCEEEEEecCCCh---hHHhhhhheeeecCCc
Q 001048 96 ---TFQIVSFLKHLVHITDATALISLLQPAP---ETFDLFDDVILMAEGK 139 (1174)
Q Consensus 96 ---a~~v~~~L~~la~~~~~tvI~sihQps~---~i~~lfD~IivL~~G~ 139 (1174)
..++++.|+++++..|.|+|++.|.... .+...+|++++|.+|+
T Consensus 152 ~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 152 QQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 2378888888887778999988774432 3667799999998764
No 274
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.29 E-value=0.00018 Score=80.96 Aligned_cols=132 Identities=13% Similarity=0.159 Sum_probs=82.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 678 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e 678 (1174)
..-|+++.+-+++|+++.|.|++|+|||||+..++..... +| ..+.|+.-+ ++..+
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g---------~~vl~~slE------~s~~~ 110 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---------ND---------DVVNLHSLE------MGKKE 110 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---------TT---------CEEEEEESS------SCHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEECC------CCHHH
Confidence 3567777778999999999999999999999888742110 11 123444322 34333
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCH
Q 001048 679 SIVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 758 (1174)
Q Consensus 679 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 758 (1174)
... +.......+++.+..+ | ...||++|++|+..|...+.++++++.|+|...
T Consensus 111 l~~------------------R~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--- 163 (315)
T 3bh0_A 111 NIK------------------RLIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS--- 163 (315)
T ss_dssp HHH------------------HHHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB---
T ss_pred HHH------------------HHHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC---
Confidence 221 1111111111111111 1 012899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHHc-CCE--EEEEec
Q 001048 759 RAAATVMRAVKNVVET-GRT--VVCTIH 783 (1174)
Q Consensus 759 ~~~~~i~~~l~~l~~~-g~t--vi~~~H 783 (1174)
...+.+.++++.++ |.. +|++-|
T Consensus 164 --~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 --VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp --HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred --HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 34566667777654 666 777766
No 275
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.29 E-value=0.0001 Score=77.66 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=26.2
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
++|++++|+||||||||||++.|++..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999765
No 276
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.27 E-value=0.0013 Score=74.80 Aligned_cols=140 Identities=14% Similarity=0.121 Sum_probs=75.9
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhh
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESIVFSAWL 686 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~l~~~~~~ 686 (1174)
+-+++|+++.|.||+|+|||||+..++........ .+| ....+.|+.-+..+ ...+-......+
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~-----~gg-------~~~~vlyi~~E~~~----~~~~l~~~~~~~ 180 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGA-----GGY-------PGGKIIFIDTENTF----RPDRLRDIADRF 180 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBT-----TTB-------CCCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccc-----cCC-------CCCeEEEEECCCCC----CHHHHHHHHHHc
Confidence 57999999999999999999999988863110000 000 01223455443321 222222222111
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH-HHHHHHHHHHhh----cCCcEEEEeCCCCCCCHH--
Q 001048 687 RLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE-QRKRLTIAVELV----ANPSIIFMDEPTSGLDAR-- 759 (1174)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG-qrqRv~ia~al~----~~p~illlDEPtsgLD~~-- 759 (1174)
..+. +++++.+-+. . ..++. +.+.+..++.++ .+++++++|+.++-.+..
T Consensus 181 ----g~~~-------~~~l~~l~~~--------~----~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~ 237 (343)
T 1v5w_A 181 ----NVDH-------DAVLDNVLYA--------R----AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 237 (343)
T ss_dssp ----TCCH-------HHHHHTEEEE--------E----CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC
T ss_pred ----CCCH-------HHHHhceeEe--------e----cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhc
Confidence 1111 1233322110 0 12232 234555566666 578999999999866432
Q ss_pred ----------HHHHHHHHHHHHHHc-CCEEEEEecCC
Q 001048 760 ----------AAATVMRAVKNVVET-GRTVVCTIHQP 785 (1174)
Q Consensus 760 ----------~~~~i~~~l~~l~~~-g~tvi~~~H~~ 785 (1174)
....++..|++++++ |.+||++.|-.
T Consensus 238 ~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 238 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 124455566666654 88988888853
No 277
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.23 E-value=5.5e-05 Score=89.32 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=48.9
Q ss_pred cCCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 001048 742 ANPSIIFMDEPTSGLDA-RAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLVLMKNGGRIIYFGPLGQ 813 (1174)
Q Consensus 742 ~~p~illlDEPtsgLD~-~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 813 (1174)
.+|++|++||+..-.+. .++..+...+..+.+.|+.+|+++|++..++....+++.--.+.|.++..++++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~ 265 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCH
Confidence 48999999999887664 6778888999888877999999999853221111111111013467777777754
No 278
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.20 E-value=0.00015 Score=76.11 Aligned_cols=73 Identities=11% Similarity=-0.080 Sum_probs=54.7
Q ss_pred HHHHHHHhCCccc-ccccccCCCcccCCccccch-hHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCE
Q 001048 36 TDYILKILGLDIC-ADTMVGDPMRRGVSGGQKKR-LTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDAT 113 (1174)
Q Consensus 36 v~~vl~~lgL~~~-~dT~VG~~~~rGLSGGqKkR-vSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~t 113 (1174)
+.+.++..++... ..+++. .+||||||| +.++++++.+|.++++|||||+||.....++.+.|.+.... +.|
T Consensus 129 ~~~~~~~~~~~~~~v~nK~D-----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~-~~~ 202 (210)
T 1pui_A 129 MIEWAVDSNIAVLVLLTKAD-----KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE-MQP 202 (210)
T ss_dssp HHHHHHHTTCCEEEEEECGG-----GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCCeEEEEeccc-----CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh-ccc
Confidence 4455566666542 244432 389999999 89999999999999999999999999999999999987643 444
Q ss_pred E
Q 001048 114 A 114 (1174)
Q Consensus 114 v 114 (1174)
.
T Consensus 203 ~ 203 (210)
T 1pui_A 203 V 203 (210)
T ss_dssp -
T ss_pred h
Confidence 3
No 279
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.19 E-value=2.3e-05 Score=87.82 Aligned_cols=40 Identities=25% Similarity=0.226 Sum_probs=34.7
Q ss_pred cccccccceeEEeCCe------EEEEecCCCCCHHHHHHHHhCCCC
Q 001048 598 RLQLLSDITGTFRPGI------LTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge------~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
.+..|++++..+.+++ ++||+||||||||||+++|.+...
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567888888888777 999999999999999999998654
No 280
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.18 E-value=0.00053 Score=79.77 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=24.1
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
++.+++++||+|+||||++..|++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999997543
No 281
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.15 E-value=0.0002 Score=75.31 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=26.8
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++++|++++|+|+|||||||+.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 66789999999999999999999999865
No 282
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.15 E-value=0.00098 Score=75.28 Aligned_cols=145 Identities=22% Similarity=0.238 Sum_probs=79.0
Q ss_pred ccccce-eEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHH
Q 001048 601 LLSDIT-GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEES 679 (1174)
Q Consensus 601 iL~~vs-~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~ 679 (1174)
.|+.+- +-+++|+++.|.||+|+|||||+..++......... .|. ...+.|+.-+..+ ...+-
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~-----gg~-------~~~vlyi~~e~~~----~~~~l 158 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEK-----GGL-------SGKAVYIDTEGTF----RWERI 158 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGG-----TCC-------SCEEEEEESSSCC----CHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccccc-----CCC-------CCeEEEEECCCCC----CHHHH
Confidence 344432 579999999999999999999998887632100000 010 1233455443321 12221
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHH-HHHHHHHHHHhh---cCCcEEEEeCCCCC
Q 001048 680 IVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTE-QRKRLTIAVELV---ANPSIIFMDEPTSG 755 (1174)
Q Consensus 680 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG-qrqRv~ia~al~---~~p~illlDEPtsg 755 (1174)
......+ ..+. +++++.+ .+.. ..++. +.+.+..++.++ .+|+++++|+.++-
T Consensus 159 ~~~~~~~----g~~~-------~~~~~~l--------~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 159 ENMAKAL----GLDI-------DNVMNNI--------YYIR----AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHT----TCCH-------HHHHHTE--------EEEE----CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHh----CCCH-------HHHhccE--------EEEe----CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 1121111 1111 1122211 1111 13333 346677788887 67999999999976
Q ss_pred CCH--------HH----HHHHHHHHHHHHHc-CCEEEEEecC
Q 001048 756 LDA--------RA----AATVMRAVKNVVET-GRTVVCTIHQ 784 (1174)
Q Consensus 756 LD~--------~~----~~~i~~~l~~l~~~-g~tvi~~~H~ 784 (1174)
.+. .. ..+++..|++++++ |.+||++.|-
T Consensus 216 ~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 216 FRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 532 11 23455556666654 8899998774
No 283
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.11 E-value=0.00016 Score=74.93 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=25.8
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
..+|++++|+||||||||||++.|.+..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34799999999999999999999998654
No 284
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.08 E-value=6.2e-05 Score=78.88 Aligned_cols=42 Identities=21% Similarity=0.157 Sum_probs=32.2
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
..++|++++|+|+||||||||++.|++.... ..|.|.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~--~~~~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCeEEEeccC
Confidence 3578999999999999999999999986531 23556554433
No 285
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.02 E-value=0.00033 Score=69.43 Aligned_cols=30 Identities=33% Similarity=0.721 Sum_probs=24.7
Q ss_pred ccceeEEeCCeEEEEecCCCCCHHHHHHHHh
Q 001048 603 SDITGTFRPGILTALMGVSGAGKTTLMDVLS 633 (1174)
Q Consensus 603 ~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~ 633 (1174)
++.++++.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445566665 99999999999999999986
No 286
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.98 E-value=0.00027 Score=71.97 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=29.2
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
.+|++++|+|||||||||++++|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 468999999999999999999998753 445666543
No 287
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.97 E-value=0.00038 Score=80.86 Aligned_cols=46 Identities=22% Similarity=0.053 Sum_probs=36.4
Q ss_pred ccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeC
Q 001048 603 SDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 652 (1174)
Q Consensus 603 ~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 652 (1174)
++++++ +|++++++|+|||||||++..|++.... ..|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeeccc
Confidence 577887 8999999999999999999999996542 246676655543
No 288
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.96 E-value=0.00056 Score=77.96 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=46.9
Q ss_pred HHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCC
Q 001048 70 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEG 138 (1174)
Q Consensus 70 SIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G 138 (1174)
+||++|..+|++|++|||| |..+.. .+.+++. .|.++++++|..+.. +.+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~----~~~~~~~-~G~~vl~t~H~~~~~--~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIR----LALTAAE-TGHLVFGTLHTTSAA--KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHH----HHHHHHH-TTCEEEEEESCSSHH--HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHH----HHHHHHh-cCCEEEEEEccChHH--HHHHHHhhhcCc
Confidence 8999999999999999999 655533 3333443 588999999987743 889999999665
No 289
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.95 E-value=0.00053 Score=86.99 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=28.2
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
+.+++|+.++|.||||+|||||+++|+|...
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999999999764
No 290
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.89 E-value=0.0002 Score=82.76 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=24.0
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998754
No 291
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.88 E-value=0.00021 Score=79.87 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=41.4
Q ss_pred ccCCccccchhHHHHHHhcCCcEeeeeCCCCC-cChHHHHHHHHHHHHHhHhCCCEEEEEec
Q 001048 59 RGVSGGQKKRLTTGELIVGPTRALFMDEISNG-LDSSTTFQIVSFLKHLVHITDATALISLL 119 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSG-LDS~sa~~v~~~L~~la~~~~~tvI~sih 119 (1174)
+++|||||||+.+|++++ +|++||||++ ||+... +.++++....+.++|++-|
T Consensus 112 ~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~ 165 (301)
T 2qnr_A 112 HDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKA 165 (301)
T ss_dssp HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCG
T ss_pred HHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeC
Confidence 569999999999999985 9999999985 999873 5666665444556666554
No 292
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.88 E-value=0.00033 Score=71.12 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=24.1
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
.|++++|+|||||||||++++|++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998653
No 293
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.85 E-value=0.00013 Score=87.84 Aligned_cols=43 Identities=33% Similarity=0.463 Sum_probs=34.5
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEE-EEE-ECCee
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEG-DIR-IGGYP 651 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G-~i~-~~g~~ 651 (1174)
..+++|++++|+|+||||||||+++|+|...+ .+| ++. ++|.+
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 35789999999999999999999999997652 244 564 77754
No 294
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.84 E-value=0.0002 Score=80.67 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=41.9
Q ss_pred EEEEeceEEEEeeCCcccccccccccccccc--------------cceeEEeCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 573 TVTFEDLRYYVDIPSAMRKNGFNQTRLQLLS--------------DITGTFRPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.+.|+|+++.++ .++..|+ |+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP------------~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHA------------NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESC------------CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCC------------CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 467778876432 2345677 89999999999999999999999999999874
No 295
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.73 E-value=0.00065 Score=75.90 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=26.6
Q ss_pred eEEeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 607 GTFRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 607 ~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+.++++..+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346789999999999999999999999754
No 296
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.69 E-value=0.00058 Score=73.34 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHh
Q 001048 727 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAATVMRAVKNVVETGRTVVCTIHQPSIDIFEAF 793 (1174)
Q Consensus 727 SgGqrqRv~ia~al~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~ 793 (1174)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.+...+-++++++.--+.....+.+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~ 227 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYF 227 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHc
Confidence 456655553 34688999999999966 677776654444444433223455555544443333344
No 297
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.63 E-value=0.00044 Score=83.84 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=40.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
..+++++++++ +|+.++|+||||+|||||+++|++... +..|.|.++|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 45778888888 899999999999999999999999764 45688877664
No 298
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.57 E-value=0.0023 Score=64.82 Aligned_cols=27 Identities=33% Similarity=0.682 Sum_probs=23.2
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468889999999999999999999853
No 299
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.54 E-value=0.012 Score=63.12 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=29.5
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH--cCCEEEEEec
Q 001048 742 ANPSIIFMDEPTSGLDARAAATVMRAVKNVVE--TGRTVVCTIH 783 (1174)
Q Consensus 742 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~--~g~tvi~~~H 783 (1174)
.+|+++++..+.+.++......+...++.+.. ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 47899999999888888666655555544322 1358888888
No 300
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.53 E-value=0.00029 Score=71.47 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=33.6
Q ss_pred HHHHHHHH-hCCcccccccccCCCcccCCccccchhHHHHHHhcCCcE
Q 001048 35 QTDYILKI-LGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRA 81 (1174)
Q Consensus 35 ~v~~vl~~-lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~I 81 (1174)
..+++++. +. ..||.||+ |+|||||||++|||+++++|++
T Consensus 84 ~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 84 DLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp CHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGG
T ss_pred CHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCcc
Confidence 45666666 54 47999997 5999999999999999999986
No 301
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.49 E-value=0.0011 Score=70.65 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=26.2
Q ss_pred ccccceeEEe---CCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 601 LLSDITGTFR---PGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 601 iL~~vs~~i~---~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
-|.++|+++. +|.+++|.|++||||||+++.|+....
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3556666665 899999999999999999999998654
No 302
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.46 E-value=0.00057 Score=77.78 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=35.6
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.+.+++++++.+.+|.+++|+|++|+|||||++.|++..
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356889999999999999999999999999999999854
No 303
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.45 E-value=0.0029 Score=64.63 Aligned_cols=51 Identities=12% Similarity=0.050 Sum_probs=42.9
Q ss_pred HHHhcCCcEeeeeCCCC-CcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChh
Q 001048 73 ELIVGPTRALFMDEISN-GLDSSTTFQIVSFLKHLVHITDATALISLLQPAPE 124 (1174)
Q Consensus 73 ~aLv~~P~IL~LDEPTS-GLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~ 124 (1174)
...+.+|++|+||||++ ++|......+.+.++.... .++++|+|.|.|..+
T Consensus 95 ~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 95 LKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred HHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 34567899999999996 9999999999999988754 578899988888776
No 304
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.43 E-value=0.0021 Score=75.90 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=38.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC------C----CeEEEEEEECCeeCC---cccccceEEEEccCCCCCCCCCHHHHH
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRKT------G----GIIEGDIRIGGYPKV---QHTFARISGYCEQNDIHSPNITVEESI 680 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~~------~----~~~~G~i~~~g~~~~---~~~~~~~~~~v~Q~~~~~~~lTv~e~l 680 (1174)
.++|+|+||+|||||+|.|+|... + .+..|.+.++|++.. ....++..++.+|....+...+..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 589999999999999999999642 1 134688999997532 112223333444443334444444554
Q ss_pred HH
Q 001048 681 VF 682 (1174)
Q Consensus 681 ~~ 682 (1174)
..
T Consensus 262 ~~ 263 (439)
T 1mky_A 262 EK 263 (439)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 305
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.40 E-value=0.0026 Score=65.50 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=27.2
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC------CCeEEEEEEECC
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT------GGIIEGDIRIGG 649 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~------~~~~~G~i~~~g 649 (1174)
.+++++++..++. .++++|++|+|||||++.+.+... .++..+.+.++|
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 5789999998887 568999999999999999997321 123455666655
No 306
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.40 E-value=0.0017 Score=67.95 Aligned_cols=29 Identities=31% Similarity=0.721 Sum_probs=24.1
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHh
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLS 633 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~ 633 (1174)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445566665 99999999999999999885
No 307
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.36 E-value=0.001 Score=71.94 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=47.3
Q ss_pred HHHHHHhCCcccccccccCCCcccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEE
Q 001048 37 DYILKILGLDICADTMVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALI 116 (1174)
Q Consensus 37 ~~vl~~lgL~~~~dT~VG~~~~rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~ 116 (1174)
.+.|+. |.+..+..++. +|||||||+++ ++++.+|++++||||...+|.. ++++ .+.++++
T Consensus 100 ~~~L~~--l~~~~~~~~~~-----ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v 160 (245)
T 2jeo_A 100 HRTLKN--IVEGKTVEVPT-----YDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FHLRLFV 160 (245)
T ss_dssp HHHHHH--HHTTCCEEECC-----EETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CSEEEEE
T ss_pred HHHHHH--HHCCCCeeccc-----ccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cCeEEEE
Confidence 344444 45666666644 99999999988 5888999999999988777753 2222 3678888
Q ss_pred EecC
Q 001048 117 SLLQ 120 (1174)
Q Consensus 117 sihQ 120 (1174)
+.|.
T Consensus 161 ~th~ 164 (245)
T 2jeo_A 161 DTDS 164 (245)
T ss_dssp ECCH
T ss_pred ECCH
Confidence 8763
No 308
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.30 E-value=0.0017 Score=66.27 Aligned_cols=27 Identities=41% Similarity=0.406 Sum_probs=24.2
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999854
No 309
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.28 E-value=0.0011 Score=68.84 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=31.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
..+++++|+..++++ ++++|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 368899999988885 689999999999999999874
No 310
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.24 E-value=0.0044 Score=68.30 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.1
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+.++.-+.|.||+|+|||||.+.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999998754
No 311
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.22 E-value=0.0018 Score=68.76 Aligned_cols=56 Identities=20% Similarity=0.074 Sum_probs=37.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCCCC-CeEEEEEEE--------CCeeCCc----ccccceEEEEccC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRKTG-GIIEGDIRI--------GGYPKVQ----HTFARISGYCEQN 667 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~~~-~~~~G~i~~--------~g~~~~~----~~~~~~~~~v~Q~ 667 (1174)
+.+++|+|||||||||+.++|++.... .+..|++.. +|.++.. ...++.+++++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 568999999999999999999985421 134577665 5655431 1233456777765
No 312
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.22 E-value=0.0072 Score=68.06 Aligned_cols=45 Identities=4% Similarity=0.133 Sum_probs=34.6
Q ss_pred hcCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 001048 741 VANPSIIFMDEPTS-GLDARAAATVMRAVKNVVETGRTVVCTIHQP 785 (1174)
Q Consensus 741 ~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 785 (1174)
..+|++|++||+-. .-|..+...+...+..+.+.|+.+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35699999999865 2344778888889888877778888888754
No 313
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.22 E-value=0.0019 Score=66.35 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=26.2
Q ss_pred cceeEEeCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 604 DITGTFRPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 604 ~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56788889999999999999999999999864
No 314
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.20 E-value=0.0007 Score=74.95 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCcc----cccccccCCCcccCCccccchhHHH--HHHhcCCcEeeeeCCCCCcChHH
Q 001048 35 QTDYILKILGLDI----CADTMVGDPMRRGVSGGQKKRLTTG--ELIVGPTRALFMDEISNGLDSST 95 (1174)
Q Consensus 35 ~v~~vl~~lgL~~----~~dT~VG~~~~rGLSGGqKkRvSIA--~aLv~~P~IL~LDEPTSGLDS~s 95 (1174)
...+.++.+.-.- ...+.++. +.+.+||||+||+++| +++ +|+||++||+|+|||+..
T Consensus 106 ~l~~~l~~l~~g~~t~~~~~v~~p~-y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 106 LLQEVLNTIFNNNEHPDQDTVVLPK-YDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHHHHTC------CCEEEECC-EETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred HHHHHHHHhhccCccccCcceeecc-CccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 4556677765331 01222322 3466999999999997 555 899999999999999865
No 315
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.20 E-value=0.0046 Score=66.25 Aligned_cols=79 Identities=10% Similarity=0.122 Sum_probs=50.7
Q ss_pred CCccccch-hHHHHHHh--cCCcEeeeeCCCCCcChH-------H-----HHHHHHHHHHHhHhCCCEEEEEecCCChh-
Q 001048 61 VSGGQKKR-LTTGELIV--GPTRALFMDEISNGLDSS-------T-----TFQIVSFLKHLVHITDATALISLLQPAPE- 124 (1174)
Q Consensus 61 LSGGqKkR-vSIA~aLv--~~P~IL~LDEPTSGLDS~-------s-----a~~v~~~L~~la~~~~~tvI~sihQps~~- 124 (1174)
.++.+..+ +.-..+++ .+|+++++||||+++|+. + ...+++.|+++++..|.|||++-|.....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~ 178 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 178 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence 45554332 33344444 589999999999999985 3 34577778888877789999876643321
Q ss_pred -----------------HHhhhhheeeecCCc
Q 001048 125 -----------------TFDLFDDVILMAEGK 139 (1174)
Q Consensus 125 -----------------i~~lfD~IivL~~G~ 139 (1174)
+-..+|++++|.+|+
T Consensus 179 ~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 179 GAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp ------------------CCTTCEEEEEEECS
T ss_pred CccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 222799999998764
No 316
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.19 E-value=0.00078 Score=76.85 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=29.5
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCe
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 650 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 650 (1174)
+++.+++|+|++|||||||+|.|+|...+ ..|+|.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~--~~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE--RGHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh--cCCeEEEEee
Confidence 46889999999999999999999985431 2355555443
No 317
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.16 E-value=0.056 Score=61.35 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=28.1
Q ss_pred cccccce--eEEeCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 600 QLLSDIT--GTFRPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 600 ~iL~~vs--~~i~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444442 3589999999999999999999988765
No 318
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.13 E-value=0.002 Score=67.32 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=25.3
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
...+|.+++|+||||||||||.+.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999998754
No 319
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.12 E-value=0.00072 Score=77.53 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=29.1
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 598 RLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++.+++++++.| +|+|+||+|||||++.|.|..
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 456889999987 999999999999999998853
No 320
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.10 E-value=0.0004 Score=71.76 Aligned_cols=80 Identities=5% Similarity=-0.092 Sum_probs=60.4
Q ss_pred CccccchhHHHH------HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeee
Q 001048 62 SGGQKKRLTTGE------LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILM 135 (1174)
Q Consensus 62 SGGqKkRvSIA~------aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL 135 (1174)
|+|+++|+.++. +++.+|+...+|+ |||+..... ++.++.+.. .+.++|.+-|.-..++-+.+|+|+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~ii~tsh~~~~~~e~~~~~i~-- 168 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERYFYNTSHLQPTNLNDIVKNLK-- 168 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTSEEECSSSCGGGHHHHHHHHH--
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccEEEeCCCCChhhHHHHHHHHh--
Confidence 999999999988 9999999999994 899988888 888887753 467888877752357788899999
Q ss_pred cCCcEEEeCCcch
Q 001048 136 AEGKIVYHGPLSY 148 (1174)
Q Consensus 136 ~~G~vvy~G~~~~ 148 (1174)
.+|+++.+|+++-
T Consensus 169 ~~g~~~~~~~~~~ 181 (189)
T 2bdt_A 169 TNPRFIFCMAGDP 181 (189)
T ss_dssp HCGGGSCC-----
T ss_pred hCCcEEEeecCCc
Confidence 9999999998753
No 321
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.03 E-value=0.016 Score=68.33 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=73.4
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHH
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEES 679 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~Q~~~~~~~lTv~e~ 679 (1174)
.-|+.+.+-+++|+++.|.|++|+|||||...++...... .| ..+.|+.-+ ++..+-
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--------~g---------~~vl~~slE------~~~~~l 244 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--------EG---------VGVGIYSLE------MPAAQL 244 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--------TC---------CCEEEEESS------SCHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--------CC---------CeEEEEECC------CCHHHH
Confidence 4567776779999999999999999999998887532100 01 112333221 232221
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHHcCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeCCCCCCCHH
Q 001048 680 IVFSAWLRLSTQIDSKTKAEFVNEVLQTIELDGIKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 759 (1174)
Q Consensus 680 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~ 759 (1174)
. .+.......+.+.... - ..|+..+.+|+.-|...+.+.++.+.|+|.. +.
T Consensus 245 ~------------------~R~~~~~~~i~~~~l~---~-----g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~- 295 (444)
T 2q6t_A 245 T------------------LRMMCSEARIDMNRVR---L-----GQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TL- 295 (444)
T ss_dssp H------------------HHHHHHHTTCCTTTCC---G-----GGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BH-
T ss_pred H------------------HHHHHHHcCCCHHHHh---C-----CCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CH-
Confidence 1 1111111111121111 1 1488888888888887777778888877643 32
Q ss_pred HHHHHHHHHHHHHH-cCCEEEEEec
Q 001048 760 AAATVMRAVKNVVE-TGRTVVCTIH 783 (1174)
Q Consensus 760 ~~~~i~~~l~~l~~-~g~tvi~~~H 783 (1174)
.++...++++.+ .|..+|++-+
T Consensus 296 --~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 296 --MEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp --HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred --HHHHHHHHHHHHHcCCCEEEEcC
Confidence 334555565553 3555555543
No 322
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.03 E-value=0.0012 Score=80.95 Aligned_cols=89 Identities=8% Similarity=0.093 Sum_probs=62.6
Q ss_pred cccchhHHHHHHhcCCcEeeeeCC------CCCcChHHHHHHHHHHHHHhHhC-CCEEEEEecCCC---hhHHhhhh---
Q 001048 64 GQKKRLTTGELIVGPTRALFMDEI------SNGLDSSTTFQIVSFLKHLVHIT-DATALISLLQPA---PETFDLFD--- 130 (1174)
Q Consensus 64 GqKkRvSIA~aLv~~P~IL~LDEP------TSGLDS~sa~~v~~~L~~la~~~-~~tvI~sihQps---~~i~~lfD--- 130 (1174)
..++++.++.+....|+++++||| |+|||+..+.++.+.+++..+.. +.+++++.|.-. .+..++++
T Consensus 132 ~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~ 211 (608)
T 3szr_A 132 ISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD 211 (608)
T ss_dssp CCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC
T ss_pred cchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh
Confidence 345677777777889999999999 99999999999999999965433 334444444322 23334433
Q ss_pred -----heeeecCCcEEEeCCcchHHHH
Q 001048 131 -----DVILMAEGKIVYHGPLSYSCKF 152 (1174)
Q Consensus 131 -----~IivL~~G~vvy~G~~~~~~~y 152 (1174)
.|+|+.++..+..|+.+++.+.
T Consensus 212 ~~g~rtI~VlTK~Dlv~~g~~~~~~~~ 238 (608)
T 3szr_A 212 PEGDRTIGILTKPDLVDKGTEDKVVDV 238 (608)
T ss_dssp SSCCSEEEEEECGGGSSSSSTTCCCCC
T ss_pred hcCCceEEEecchhhcCcccHHHHHHH
Confidence 3789999999999976554443
No 323
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.96 E-value=0.0012 Score=69.52 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=31.5
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEE--EEEECC
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEG--DIRIGG 649 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G--~i~~~g 649 (1174)
.+++|.+++|+|++||||||+.+.|++... +..| .+.++|
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~ 62 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDG 62 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECC
Confidence 457899999999999999999999998654 1235 566654
No 324
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.94 E-value=0.0011 Score=74.59 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=34.3
Q ss_pred ccccccceeEEeCCeE--EEEecCCCCCHHHHHHHHhCCC
Q 001048 599 LQLLSDITGTFRPGIL--TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~--~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..+++.+++.+++|+. ++|+|++||||||+.++|++..
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3588999999999998 9999999999999999999843
No 325
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.82 E-value=0.019 Score=65.50 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.2
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999999999998643
No 326
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.80 E-value=0.0092 Score=59.70 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 327
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.69 E-value=0.011 Score=67.89 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.3
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998643
No 328
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.69 E-value=0.0039 Score=65.01 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 329
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.65 E-value=0.011 Score=60.37 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999984
No 330
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.51 E-value=0.0061 Score=61.86 Aligned_cols=38 Identities=37% Similarity=0.335 Sum_probs=27.6
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCCC-CCeEEEEEEECCe
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGRKT-GGIIEGDIRIGGY 650 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~~~-~~~~~G~i~~~g~ 650 (1174)
.+++|+|+||||||||++.|.+... .+..-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 5789999999999999999987532 1223466665543
No 331
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.48 E-value=0.0059 Score=70.04 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=33.0
Q ss_pred eeEEeCCeEEEEecCCCCCHHHHHHHHhCCCC---------CCeEEEEEEECCe
Q 001048 606 TGTFRPGILTALMGVSGAGKTTLMDVLSGRKT---------GGIIEGDIRIGGY 650 (1174)
Q Consensus 606 s~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~---------~~~~~G~i~~~g~ 650 (1174)
-..+..|..++|+|+||+|||||+|.|+|... -.+..|.+.+.|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 33567888999999999999999999999621 1245677777653
No 332
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.45 E-value=0.0063 Score=62.42 Aligned_cols=28 Identities=36% Similarity=0.540 Sum_probs=25.1
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..+|.++.|+|++||||||+.+.|++..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999754
No 333
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.44 E-value=0.003 Score=72.60 Aligned_cols=83 Identities=10% Similarity=-0.019 Sum_probs=59.0
Q ss_pred cCCccccchhHHHHHHh-cCCcEeeeeC---CC------CCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhh
Q 001048 60 GVSGGQKKRLTTGELIV-GPTRALFMDE---IS------NGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLF 129 (1174)
Q Consensus 60 GLSGGqKkRvSIA~aLv-~~P~IL~LDE---PT------SGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lf 129 (1174)
.+|+|+++|..++.++. .+|++++||| |+ +++|...+..+.+.|+++.+..+.++++.- +| .+.-+.+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild-e~-~~~~r~~ 335 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE-SP-SYLDRYN 335 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE-CS-SHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC-CC-CHHHHHH
Confidence 36778888988887775 5999999999 64 689999999999999988655566777643 44 4677788
Q ss_pred hheeeecCCcEEEeCCc
Q 001048 130 DDVILMAEGKIVYHGPL 146 (1174)
Q Consensus 130 D~IivL~~G~vvy~G~~ 146 (1174)
|++.++++ ++..|+.
T Consensus 336 ~~i~~i~~--~l~~~~~ 350 (365)
T 1lw7_A 336 QVKAVIEK--VLNEEEI 350 (365)
T ss_dssp HHHHHHHH--HTSCCCC
T ss_pred HHHHHHHH--Hhcccch
Confidence 88888864 4445443
No 334
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.42 E-value=0.0069 Score=61.98 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.4
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
No 335
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.41 E-value=0.066 Score=60.06 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=24.0
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..|..-+.|.||+|+|||||.+.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566778999999999999999999754
No 336
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.35 E-value=0.0023 Score=72.81 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=34.9
Q ss_pred cccccccceeEEeCCeE--EEEecCCCCCHHHHHHHHhCCC
Q 001048 598 RLQLLSDITGTFRPGIL--TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 598 ~~~iL~~vs~~i~~Ge~--~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
...+++.++..++.|++ +.+.||+|+||||+++++++..
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34688889999999998 9999999999999999999854
No 337
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.29 E-value=0.006 Score=63.48 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..+++|+|++||||||+.+.|++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998753
No 338
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.26 E-value=0.0022 Score=71.26 Aligned_cols=46 Identities=22% Similarity=0.144 Sum_probs=34.8
Q ss_pred cc-ceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 603 SD-ITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 603 ~~-vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
++ ++++.+ |++++++|++|+||||++..|++.... ..|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecC
Confidence 45 777776 999999999999999999999986531 13456554443
No 339
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.19 E-value=0.027 Score=59.47 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=40.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec---------CCCHHHHHHhcceeEEe
Q 001048 743 NPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH---------QPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 743 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H---------~~~~~~~~~~d~~~~l~ 800 (1174)
+|+++++||.-. |+. .+++.++.+++.|.+||++-| .++.++...+|.+.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 553 355666777777999999999 45567788888887753
No 340
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.16 E-value=0.0097 Score=60.35 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
|.++.|.|++||||||+.+.|+....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999987543
No 341
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.06 E-value=0.0099 Score=59.79 Aligned_cols=23 Identities=30% Similarity=0.189 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+++|.|++||||||+.+.|+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
No 342
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.04 E-value=0.0078 Score=65.25 Aligned_cols=34 Identities=26% Similarity=0.550 Sum_probs=24.4
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++++++..++| +.|.||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 455566666666 8899999999999999999854
No 343
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.97 E-value=0.0057 Score=65.93 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=37.1
Q ss_pred CCccccchhHHHHHH-hcCCcEeeee----CCCCCcChHHHHHHHHHHHHHhH
Q 001048 61 VSGGQKKRLTTGELI-VGPTRALFMD----EISNGLDSSTTFQIVSFLKHLVH 108 (1174)
Q Consensus 61 LSGGqKkRvSIA~aL-v~~P~IL~LD----EPTSGLDS~sa~~v~~~L~~la~ 108 (1174)
+|| |+ ++| +.+|++++|| |||+|||..++..+.+.|+...+
T Consensus 153 lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 153 PSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp TTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred CCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 898 77 677 9999999999 99999999999999999988754
No 344
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.95 E-value=0.011 Score=62.80 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.-+++|.||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999854
No 345
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.95 E-value=0.011 Score=60.35 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999985
No 346
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.94 E-value=0.01 Score=63.45 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.9
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999999874
No 347
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.89 E-value=0.0078 Score=65.21 Aligned_cols=46 Identities=30% Similarity=0.316 Sum_probs=34.6
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCCCCCCeEEEEEEECCee
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 651 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 651 (1174)
++++.+ ..+++.++.|+|+|||||||+.+.|+..... +.+.+++..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~----~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG----NIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT----CCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC----CcEEEecHH
Confidence 455554 6778899999999999999999999876531 345566643
No 348
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.89 E-value=0.02 Score=65.59 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=47.1
Q ss_pred hhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecC
Q 001048 68 RLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAE 137 (1174)
Q Consensus 68 RvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~ 137 (1174)
+.+|+++|..+|+++++|||| |..+. ..+++.. ..|.++++|+|..+ ..+.+||++.|..
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~~--~~g~~vi~t~H~~~--~~~~~~rl~~l~~ 258 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETV---ETALRAA--ETGHLVFGTLHTNT--AIDTIHRIVDIFP 258 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHHH--TTTCEEEECCCCCS--HHHHHHHHHHTSC
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHHH--hcCCEEEEEECcch--HHHHHHHHHHhcC
Confidence 679999999999999999999 66553 3445543 35789999988754 7788999988853
No 349
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.86 E-value=0.028 Score=55.38 Aligned_cols=50 Identities=10% Similarity=0.075 Sum_probs=38.3
Q ss_pred HHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCE-EEEEecCCChhH
Q 001048 74 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDAT-ALISLLQPAPET 125 (1174)
Q Consensus 74 aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~t-vI~sihQps~~i 125 (1174)
+++.+|++|+||||++ +|...+..+.+.++++... |++ +|++-|.|..+.
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~-g~~~iiits~~~p~~l 129 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNS-GKGFLLLGSEYTPQQL 129 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHH-TCCEEEEEESSCTTTS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHc-CCcEEEEECCCCHHHc
Confidence 4567899999999998 6665588888999887654 566 777777666554
No 350
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.77 E-value=0.013 Score=60.11 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 36899999999999999987543
No 351
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.71 E-value=0.014 Score=60.03 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.9
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999753
No 352
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.70 E-value=0.015 Score=59.65 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
|.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999863
No 353
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.53 E-value=0.015 Score=62.91 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.3
Q ss_pred eEEEEecCCCCCHHHHHHHHhCCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998754
No 354
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.42 E-value=0.018 Score=58.68 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999854
No 355
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.39 E-value=0.012 Score=68.22 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=38.5
Q ss_pred cCCccccchhHHHHHHhcCCc---EeeeeCCC-CCcChHHHHHHHHHHHHHhHhCCCEEEEEec
Q 001048 60 GVSGGQKKRLTTGELIVGPTR---ALFMDEIS-NGLDSSTTFQIVSFLKHLVHITDATALISLL 119 (1174)
Q Consensus 60 GLSGGqKkRvSIA~aLv~~P~---IL~LDEPT-SGLDS~sa~~v~~~L~~la~~~~~tvI~sih 119 (1174)
+++++.++|++||++++.+|+ +|++|||| +|||+... +.++.+.. +.++|+-+|
T Consensus 118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVin 175 (418)
T 2qag_C 118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIA 175 (418)
T ss_dssp HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEEE
Confidence 357788999999999999999 99999999 69998773 44455542 556665443
No 356
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.35 E-value=0.019 Score=57.65 Aligned_cols=19 Identities=26% Similarity=0.655 Sum_probs=18.3
Q ss_pred EEEEecCCCCCHHHHHHHH
Q 001048 614 LTALMGVSGAGKTTLMDVL 632 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l 632 (1174)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 357
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.25 E-value=0.022 Score=59.87 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 358
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.21 E-value=0.019 Score=58.39 Aligned_cols=25 Identities=36% Similarity=0.278 Sum_probs=22.2
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.++..+.|.|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
No 359
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.14 E-value=0.024 Score=58.82 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=23.6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+|.+++|.|++||||||+.+.|+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999998754
No 360
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.11 E-value=0.023 Score=58.89 Aligned_cols=23 Identities=35% Similarity=0.526 Sum_probs=20.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+++|.|++||||||+.+.|+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999998754
No 361
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.10 E-value=0.022 Score=62.79 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.6
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..|.++.|.|||||||||+.+.|+...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998644
No 362
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.09 E-value=0.026 Score=58.86 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=23.0
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+|.+++|.|++||||||+.+.|+...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998643
No 363
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.07 E-value=0.074 Score=62.77 Aligned_cols=79 Identities=11% Similarity=0.024 Sum_probs=60.9
Q ss_pred cCCccccchhHHHHHHh--cCCcEeeeeCCCCCcChH--------HHHHHHHHHHHHhHhCCCEEEEEecC---------
Q 001048 60 GVSGGQKKRLTTGELIV--GPTRALFMDEISNGLDSS--------TTFQIVSFLKHLVHITDATALISLLQ--------- 120 (1174)
Q Consensus 60 GLSGGqKkRvSIA~aLv--~~P~IL~LDEPTSGLDS~--------sa~~v~~~L~~la~~~~~tvI~sihQ--------- 120 (1174)
++|++|.+ +.++.++ .+|+++++|+++...++. .-..+.+.|+++|+..+.+||+.-|-
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~ 372 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQD 372 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC--
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCC
Confidence 48999886 6677776 689999999999988542 12677888999998888888886551
Q ss_pred --CC-------hhHHhhhhheeeecCCcE
Q 001048 121 --PA-------PETFDLFDDVILMAEGKI 140 (1174)
Q Consensus 121 --ps-------~~i~~lfD~IivL~~G~v 140 (1174)
|. ..+-..+|.|++|..++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 43 256778999999987763
No 364
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.96 E-value=0.026 Score=58.94 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=23.2
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|.+++|.|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
No 365
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.95 E-value=0.027 Score=56.94 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.2
Q ss_pred eEEEEecCCCCCHHHHHHHHhC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
No 366
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.92 E-value=0.025 Score=56.88 Aligned_cols=23 Identities=30% Similarity=0.383 Sum_probs=20.6
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.+++|+|++|||||||++.|.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999999874
No 367
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.87 E-value=0.026 Score=57.12 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++||||||+.+.|+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998643
No 368
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.86 E-value=0.24 Score=59.25 Aligned_cols=34 Identities=21% Similarity=0.068 Sum_probs=27.8
Q ss_pred ccccceeEEeCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 601 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 601 iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
-|+.+.+-+++|+++.|.|++|+|||||+--++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4555544689999999999999999999877654
No 369
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.86 E-value=0.026 Score=58.09 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.9
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45779999999999999999999753
No 370
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.85 E-value=0.04 Score=63.54 Aligned_cols=101 Identities=12% Similarity=0.074 Sum_probs=62.9
Q ss_pred HHHHHHHHhCCccc--c-cccccCCCcccCCc-cccchhHHHHHHh--cCCcEeeeeCCCCCcChHHH------------
Q 001048 35 QTDYILKILGLDIC--A-DTMVGDPMRRGVSG-GQKKRLTTGELIV--GPTRALFMDEISNGLDSSTT------------ 96 (1174)
Q Consensus 35 ~v~~vl~~lgL~~~--~-dT~VG~~~~rGLSG-GqKkRvSIA~aLv--~~P~IL~LDEPTSGLDS~sa------------ 96 (1174)
++..+.+.+|+..- . |-.+.. -.++ .+++.+..+.+++ .+|+++++||||+.+|+...
T Consensus 228 rl~~~a~~~gl~~~~vleni~~~~----~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l 303 (400)
T 3lda_A 228 RLVSIAQRFGLDPDDALNNVAYAR----AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHL 303 (400)
T ss_dssp HHHHHHHHTTCCHHHHHHTEEEEE----CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHH
T ss_pred HHHHHHHHcCCChHhHhhcEEEec----cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHH
Confidence 45556777777421 1 112221 1222 2334444444443 47999999999999997533
Q ss_pred HHHHHHHHHHhHhCCCEEEEEecCCC------------------hhHHhhhhheeeecCCc
Q 001048 97 FQIVSFLKHLVHITDATALISLLQPA------------------PETFDLFDDVILMAEGK 139 (1174)
Q Consensus 97 ~~v~~~L~~la~~~~~tvI~sihQps------------------~~i~~lfD~IivL~~G~ 139 (1174)
.++++.|+++++..|.|||++.|-.+ ..+-..+|.++.|.+|+
T Consensus 304 ~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 304 AKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 67888999999888999999887621 22345679999998764
No 371
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.76 E-value=0.083 Score=59.93 Aligned_cols=64 Identities=6% Similarity=0.103 Sum_probs=45.2
Q ss_pred HhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheeeecCCcEEEeCCcc
Q 001048 75 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPLS 147 (1174)
Q Consensus 75 Lv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~IivL~~G~vvy~G~~~ 147 (1174)
+.++|+|+++|||++ ||..+...+.+.|++.. .+.++|++.|.|..-.-. +.+....+...|++
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~------l~sR~~~~~~~~~~ 194 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAP------IKSQCLLIRCPAPS 194 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCSSCHH------HHTTSEEEECCCCC
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHH------HHhhceEEecCCcC
Confidence 678999999999999 99999999999998854 356788888887632111 33455666666553
No 372
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.72 E-value=0.025 Score=61.77 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=21.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999964
No 373
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.66 E-value=0.014 Score=60.16 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=23.6
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++++.+++|.|++||||||+.+.|+..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 456779999999999999999999854
No 374
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.66 E-value=0.03 Score=58.52 Aligned_cols=26 Identities=42% Similarity=0.481 Sum_probs=23.3
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
No 375
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.64 E-value=0.032 Score=57.67 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999865
No 376
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.63 E-value=0.015 Score=60.95 Aligned_cols=24 Identities=54% Similarity=0.743 Sum_probs=21.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
+++|.|++||||||+++.|+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987543
No 377
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.52 E-value=0.037 Score=56.72 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHhC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999974
No 378
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.51 E-value=0.041 Score=60.91 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=31.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 599 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 599 ~~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
...+|+....+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 46788888888 7999999999999999999998764
No 379
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.47 E-value=0.033 Score=57.02 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++.|.|++||||||+.+.|+...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998643
No 380
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.45 E-value=0.15 Score=68.49 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=25.8
Q ss_pred EEeCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 608 TFRPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 608 ~i~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-+++|+++.|.||+|+|||||+..++..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 5999999999999999999999988763
No 381
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.32 E-value=0.04 Score=58.00 Aligned_cols=26 Identities=38% Similarity=0.460 Sum_probs=22.3
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|-.+.|+|++||||||+.+.|+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999854
No 382
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.25 E-value=0.046 Score=64.20 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=29.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhC
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.-|+.+.+-+++|+++.|.|++|+|||||.--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 44666666689999999999999999999877764
No 383
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.17 E-value=0.032 Score=56.63 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=17.7
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999754
No 384
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.11 E-value=0.058 Score=54.92 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=18.4
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
-++|+|++|+|||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999987665
No 385
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.08 E-value=0.24 Score=57.05 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.3
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++.-+.|.||+|+|||+|.+.|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998653
No 386
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.07 E-value=0.039 Score=54.69 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 36899999999999999998854
No 387
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.03 E-value=0.096 Score=53.88 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=19.5
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.++|+|++|+|||||++.+.|
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999976
No 388
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.98 E-value=0.039 Score=56.44 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.|.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999854
No 389
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.97 E-value=0.046 Score=59.70 Aligned_cols=23 Identities=35% Similarity=0.689 Sum_probs=21.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 390
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.96 E-value=0.046 Score=56.18 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+++|.|++||||||+.+.|+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998643
No 391
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.93 E-value=0.046 Score=54.61 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999999853
No 392
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.89 E-value=0.046 Score=57.89 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=21.6
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++.+++|.|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999853
No 393
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.85 E-value=0.049 Score=54.16 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 394
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.83 E-value=0.042 Score=54.45 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 395
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.78 E-value=0.045 Score=55.55 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.+.+..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 396
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.74 E-value=0.056 Score=55.96 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.+.+++|.|++||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999753
No 397
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=92.73 E-value=0.047 Score=61.92 Aligned_cols=24 Identities=29% Similarity=0.621 Sum_probs=21.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
|-.++|+|.+|+|||||+|.|+|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999983
No 398
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.71 E-value=0.049 Score=58.60 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||+|.|.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999999864
No 399
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.70 E-value=0.052 Score=53.95 Aligned_cols=21 Identities=43% Similarity=0.675 Sum_probs=19.4
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|+|++|+|||||++.+.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999874
No 400
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.68 E-value=0.051 Score=54.58 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999884
No 401
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.64 E-value=0.048 Score=56.56 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999999999874
No 402
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.61 E-value=0.048 Score=53.65 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998854
No 403
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.58 E-value=0.049 Score=53.79 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 404
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.54 E-value=0.056 Score=56.60 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=19.0
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.++|.||+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 405
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.54 E-value=0.059 Score=53.91 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.0
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+.++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999853
No 406
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.52 E-value=0.095 Score=53.71 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=28.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 600 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 600 ~iL~~vs~~i~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
..+++.-..+ .|..++|+||+|+|||||...|+.+
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4566655554 5889999999999999999999864
No 407
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.51 E-value=0.19 Score=53.50 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=49.8
Q ss_pred HHHHHh--cCCcEeeeeCCCCCc--ChHHHHHHHHHHHHHhHhCCCEEEEEecCCChh-------HHhhhhheeeecC
Q 001048 71 TGELIV--GPTRALFMDEISNGL--DSSTTFQIVSFLKHLVHITDATALISLLQPAPE-------TFDLFDDVILMAE 137 (1174)
Q Consensus 71 IA~aLv--~~P~IL~LDEPTSGL--DS~sa~~v~~~L~~la~~~~~tvI~sihQps~~-------i~~lfD~IivL~~ 137 (1174)
..+.++ .+|+++++|++|+.+ |.....+.+..|.+.++..|.|++++.|..... +.+.+|.|+.|..
T Consensus 119 ~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 119 VLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 334444 579999999999988 665667777788888777889999987766542 4577899999964
No 408
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.50 E-value=0.049 Score=53.79 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++++|++|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 409
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.50 E-value=0.063 Score=58.21 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 410
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.50 E-value=0.046 Score=53.81 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
No 411
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.48 E-value=0.048 Score=57.47 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.+..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999853
No 412
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.43 E-value=0.026 Score=62.71 Aligned_cols=55 Identities=13% Similarity=0.054 Sum_probs=42.0
Q ss_pred CCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecC
Q 001048 61 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 120 (1174)
Q Consensus 61 LSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQ 120 (1174)
++..+|||++|||+++.+|+.++| +||+.+...+++.+++..+..+.|+|+..|-
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~ 257 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKL 257 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECT
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 455669999999999999995555 6777777777888887765557777776674
No 413
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.43 E-value=0.062 Score=55.63 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
..+++|.|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
No 414
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.41 E-value=0.052 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998854
No 415
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.38 E-value=0.061 Score=55.04 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999863
No 416
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.37 E-value=0.053 Score=53.87 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 417
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.36 E-value=0.054 Score=54.38 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+++|.|++||||||+.+.|+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
No 418
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.35 E-value=0.052 Score=55.50 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
No 419
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=92.34 E-value=0.044 Score=64.97 Aligned_cols=83 Identities=8% Similarity=0.121 Sum_probs=59.3
Q ss_pred HHHHHHhCCccccc--ccccCCCcccCCccccchh----------HHHHHHhcCCc-EeeeeCCCCCcChHHHHHHHHHH
Q 001048 37 DYILKILGLDICAD--TMVGDPMRRGVSGGQKKRL----------TTGELIVGPTR-ALFMDEISNGLDSSTTFQIVSFL 103 (1174)
Q Consensus 37 ~~vl~~lgL~~~~d--T~VG~~~~rGLSGGqKkRv----------SIA~aLv~~P~-IL~LDEPTSGLDS~sa~~v~~~L 103 (1174)
.++++..|+.+..+ ..+. ..+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.+
T Consensus 247 ~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l 321 (512)
T 2ius_A 247 YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELI 321 (512)
T ss_dssp HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHH
Confidence 57899999887543 2232 24899999874 35677788898 89999999999843 34566666
Q ss_pred HHHhH---hCCCEEEEEecCCChh
Q 001048 104 KHLVH---ITDATALISLLQPAPE 124 (1174)
Q Consensus 104 ~~la~---~~~~tvI~sihQps~~ 124 (1174)
.++++ ..|.++|++.|.|+.+
T Consensus 322 ~~Lar~gRa~GI~LIlaTQrp~~d 345 (512)
T 2ius_A 322 ARLAQKARAAGIHLVLATQRPSVD 345 (512)
T ss_dssp HHHHHHCGGGTEEEEEEESCCCTT
T ss_pred HHHHHHhhhCCcEEEEEecCCccc
Confidence 66653 3466999999999844
No 420
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.32 E-value=0.071 Score=53.44 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999874
No 421
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.30 E-value=0.055 Score=54.24 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998743
No 422
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.29 E-value=0.054 Score=53.67 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998743
No 423
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.29 E-value=0.055 Score=53.53 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999874
No 424
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.28 E-value=0.051 Score=53.94 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999998754
No 425
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.24 E-value=0.067 Score=53.38 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 426
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.23 E-value=0.065 Score=56.14 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999753
No 427
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.21 E-value=0.057 Score=54.28 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998743
No 428
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.19 E-value=0.071 Score=57.14 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
++-.++|.||+||||||+.+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999974
No 429
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=92.17 E-value=0.054 Score=62.76 Aligned_cols=71 Identities=10% Similarity=-0.007 Sum_probs=52.7
Q ss_pred ccCCccccchhHHHHHHhcCCcEeeeeCCCCCcChHHHHHHHHHHHHHhHhCCCEEEEEecCCChhHHhhhhheee
Q 001048 59 RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVIL 134 (1174)
Q Consensus 59 rGLSGGqKkRvSIA~aLv~~P~IL~LDEPTSGLDS~sa~~v~~~L~~la~~~~~tvI~sihQps~~i~~lfD~Iiv 134 (1174)
..+|+|||||+++|++|...|.|+++ +++|..++ ..++.+++..+..+.+++.+--.....+-+++|.|.=
T Consensus 251 ~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~ 321 (416)
T 1udx_A 251 KTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALHA 321 (416)
T ss_dssp HHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHH
Confidence 34999999999999999999999999 99999887 5555555554445666664333444567777777653
No 430
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.15 E-value=0.057 Score=55.04 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 57999999999999999998854
No 431
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.15 E-value=0.055 Score=55.02 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.3
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 432
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.11 E-value=0.07 Score=54.47 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHhC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+.+++|.|++||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 433
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.10 E-value=0.068 Score=59.32 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=22.3
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 344 58999999999999999999853
No 434
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.08 E-value=0.051 Score=54.91 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.9
Q ss_pred eEEEEecCCCCCHHHHHHHHhC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g 634 (1174)
-.++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999975
No 435
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.08 E-value=0.071 Score=54.89 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=20.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHhC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.-+++|.|++||||||+.+.|+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999975
No 436
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.03 E-value=0.057 Score=54.20 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999875
No 437
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.03 E-value=0.061 Score=54.60 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=19.9
Q ss_pred EEEecCCCCCHHHHHHHHhCCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999998853
No 438
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=92.01 E-value=0.062 Score=58.72 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++|+|++|+|||||+|.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999874
No 439
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.99 E-value=0.12 Score=57.78 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=23.7
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
++.++.|+||+|||||||...|+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999997653
No 440
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=91.96 E-value=0.064 Score=58.01 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|||||||+|.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999964
No 441
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.91 E-value=0.072 Score=53.40 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
No 442
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.89 E-value=0.065 Score=53.10 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 443
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.84 E-value=0.055 Score=62.59 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=32.9
Q ss_pred CCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 001048 743 NPSIIFMDEPTSGLD---ARAAATVMRAVKNVVETGRTVVCTIHQPS 786 (1174)
Q Consensus 743 ~p~illlDEPtsgLD---~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 786 (1174)
.|.++++||.=.=++ +.....+.+.+++.++.|..++++||.|+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 577888888877663 56666777777777777888888888765
No 444
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.83 E-value=0.067 Score=54.21 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.|.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
No 445
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.79 E-value=0.066 Score=54.69 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4699999999999999999874
No 446
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.79 E-value=0.077 Score=59.12 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=21.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999853
No 447
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.76 E-value=0.068 Score=53.11 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999764
No 448
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.70 E-value=0.07 Score=52.65 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.1
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999763
No 449
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.66 E-value=0.07 Score=54.67 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.|.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999985
No 450
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.65 E-value=0.072 Score=56.37 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=21.2
Q ss_pred EeCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 609 FRPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 609 i~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..+|.++.|.|++||||||+.+.|+...
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999998643
No 451
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.63 E-value=0.071 Score=54.20 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 452
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=91.62 E-value=0.067 Score=60.96 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=19.6
Q ss_pred EEEecCCCCCHHHHHHHHhCC
Q 001048 615 TALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 615 ~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++|+|++|+|||||+|.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999984
No 453
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.59 E-value=0.087 Score=55.77 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=30.7
Q ss_pred cCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCE-EEEEecCC
Q 001048 742 ANPSIIFMDEPTSGL-DARAAATVMRAVKNVVETGRT-VVCTIHQP 785 (1174)
Q Consensus 742 ~~p~illlDEPtsgL-D~~~~~~i~~~l~~l~~~g~t-vi~~~H~~ 785 (1174)
.+|.++++||.-.-- +......+.+.++...+.++. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 568999999965432 233367788888887766655 77877753
No 454
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.56 E-value=0.053 Score=59.80 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=17.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHhC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+-+++|.||+||||||+.+.|+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
No 455
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.51 E-value=0.085 Score=56.84 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.6
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-+++|.|++||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
No 456
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.49 E-value=0.099 Score=54.75 Aligned_cols=27 Identities=41% Similarity=0.569 Sum_probs=23.3
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-+|.+++|.|++||||||+.+.|+...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999997643
No 457
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.47 E-value=0.076 Score=53.34 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998743
No 458
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.45 E-value=0.072 Score=53.36 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 459
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.42 E-value=0.085 Score=55.40 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
+|-.+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3557899999999999999999754
No 460
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.41 E-value=0.086 Score=53.76 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
-++|+|++|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 468999999999999999998643
No 461
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.41 E-value=0.056 Score=56.68 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=28.5
Q ss_pred hhcCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 001048 740 LVANPSIIFMDEPTS-GLDARAAATVMRAVKNVVETGRTVVCTIHQ 784 (1174)
Q Consensus 740 l~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 784 (1174)
+..+|+++++||+-. ..+.......++.+..+...|..++.++|-
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nl 126 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNV 126 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEG
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccc
Confidence 446899999999864 233222223333344445568899999983
No 462
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.41 E-value=0.089 Score=53.30 Aligned_cols=25 Identities=28% Similarity=0.590 Sum_probs=21.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.=.++++|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467999999999999999998743
No 463
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.36 E-value=0.078 Score=53.93 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.1
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++++|++|+|||||++.|.+.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 464
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.36 E-value=0.088 Score=56.99 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=20.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999854
No 465
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.35 E-value=0.079 Score=53.02 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
No 466
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.34 E-value=0.079 Score=53.46 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4799999999999999999874
No 467
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.30 E-value=0.095 Score=55.32 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.2
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
+++|.|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 468
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.30 E-value=0.086 Score=55.33 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.6
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
++..++.|+||+||||+|..+.|+-.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999853
No 469
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.27 E-value=0.082 Score=53.13 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 470
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.24 E-value=0.085 Score=57.03 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999853
No 471
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.18 E-value=0.082 Score=55.22 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 472
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.18 E-value=0.4 Score=50.30 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=41.3
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC---------CCHHHHHHhcceeEE
Q 001048 742 ANPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIHQ---------PSIDIFEAFDDLVLM 799 (1174)
Q Consensus 742 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~---------~~~~~~~~~d~~~~l 799 (1174)
.+.+++++||.---.| +.+.++.+++.|+.||++-++ ++.++...+|.+.-|
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtel 149 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKL 149 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEEC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEee
Confidence 6789999999977654 666666666679999999999 666777777877665
No 473
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.17 E-value=0.39 Score=49.84 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=41.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec---------CCCHHHHHHhcceeEEe
Q 001048 743 NPSIIFMDEPTSGLDARAAATVMRAVKNVVETGRTVVCTIH---------QPSIDIFEAFDDLVLMK 800 (1174)
Q Consensus 743 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H---------~~~~~~~~~~d~~~~l~ 800 (1174)
+.+++++||.-- +|.. .++.+++++..|+.||++-+ .++.++...+|.+.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 578999999866 6543 33777777777999999999 66678888888887763
No 474
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.17 E-value=0.094 Score=53.64 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=19.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998743
No 475
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.17 E-value=0.088 Score=57.56 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=21.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|.+|||||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 476
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.15 E-value=0.091 Score=57.67 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=19.9
Q ss_pred eEEEEecCCCCCHHHHHHHHh
Q 001048 613 ILTALMGVSGAGKTTLMDVLS 633 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~ 633 (1174)
-+++|.|++||||||+.+.|+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 477
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.10 E-value=0.086 Score=53.65 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
No 478
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.09 E-value=0.081 Score=53.50 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 479
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.05 E-value=0.088 Score=53.64 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.6
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998854
No 480
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.00 E-value=0.089 Score=54.23 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
No 481
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.99 E-value=0.09 Score=54.27 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 482
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.97 E-value=0.086 Score=53.92 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 483
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.95 E-value=0.19 Score=52.24 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 46999999999999999999854
No 484
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.94 E-value=0.086 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.9
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++++|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4699999999999999999874
No 485
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.93 E-value=0.1 Score=53.69 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998853
No 486
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.92 E-value=0.1 Score=57.97 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
|...+.|.||+|+||||+.++|++..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHH
Confidence 34689999999999999999999854
No 487
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.88 E-value=0.093 Score=53.82 Aligned_cols=21 Identities=38% Similarity=0.763 Sum_probs=19.6
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999986
No 488
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.88 E-value=0.093 Score=53.58 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.|.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3799999999999999999874
No 489
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.87 E-value=0.088 Score=53.89 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.0
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4799999999999999999873
No 490
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.86 E-value=0.12 Score=52.29 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=22.6
Q ss_pred eCCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 610 RPGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 610 ~~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998643
No 491
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.85 E-value=0.11 Score=52.25 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.2
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
-++++|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998643
No 492
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.83 E-value=0.095 Score=52.86 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999874
No 493
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.80 E-value=0.11 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
.++|+|++|+|||||++.+.+..
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998753
No 494
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.78 E-value=0.11 Score=55.21 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.3
Q ss_pred CCeEEEEecCCCCCHHHHHHHHhCCC
Q 001048 611 PGILTALMGVSGAGKTTLMDVLSGRK 636 (1174)
Q Consensus 611 ~Ge~~~l~G~sGsGKSTLl~~l~g~~ 636 (1174)
+|.+++|.|++||||||+.+.|+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998643
No 495
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.71 E-value=0.13 Score=56.71 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHhCCCC
Q 001048 612 GILTALMGVSGAGKTTLMDVLSGRKT 637 (1174)
Q Consensus 612 Ge~~~l~G~sGsGKSTLl~~l~g~~~ 637 (1174)
+.+++|+||+|||||||...|+-...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999986553
No 496
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.70 E-value=0.11 Score=53.70 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.5
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 497
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.70 E-value=0.13 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=21.0
Q ss_pred eEEEEecCCCCCHHHHHHHHhCC
Q 001048 613 ILTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 613 e~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
..+.|.||+|+|||||+++|+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999864
No 498
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.68 E-value=0.1 Score=53.12 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.8
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 499
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.66 E-value=0.1 Score=52.68 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.7
Q ss_pred EEEEecCCCCCHHHHHHHHhCC
Q 001048 614 LTALMGVSGAGKTTLMDVLSGR 635 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g~ 635 (1174)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
No 500
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.66 E-value=0.11 Score=54.33 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.0
Q ss_pred EEEEecCCCCCHHHHHHHHhC
Q 001048 614 LTALMGVSGAGKTTLMDVLSG 634 (1174)
Q Consensus 614 ~~~l~G~sGsGKSTLl~~l~g 634 (1174)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999975
Done!