BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001049
(1173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CWX|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CWX|E Chain E, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CXE|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|B Chain B, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|C Chain C, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|D Chain D, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2D69|A Chain A, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|B Chain B, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|D Chain D, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|E Chain E, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
Length = 430
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 275 DGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYAGSYE 334
D GLA + + H A P G+ T+ L +IG D T T V + AG+YE
Sbjct: 270 DLGLAIHAHRAMHAAFTRNPRHGI-----TMLALAKAARMIGVDQIHTGTAVGKMAGNYE 324
Query: 335 QV 336
++
Sbjct: 325 EI 326
>pdb|3U9U|E Chain E, Crystal Structure Of Extracellular Domain Of Human
Erbb4HER4 IN Complex With The Fab Fragment Of Mab1479
pdb|3U9U|F Chain F, Crystal Structure Of Extracellular Domain Of Human
Erbb4HER4 IN Complex With The Fab Fragment Of Mab1479
Length = 625
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 10/126 (7%)
Query: 562 VKQKLQEQGFREESITTETYLNLRYEGTDTAIMVKK---RIAEDGSGCGYAVDFEKLFQQ 618
V Q Q + + E N +Y T A VKK D S C A K+ +
Sbjct: 234 VTQCPQTFVYNPTTFQLEHNFNAKY--TYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVE 291
Query: 619 EYGFKLQNRNILVCDVRVRGIGVTNILKPQAIEPTS-----GTPKVEGHYKVFFNGWHDA 673
E G K+ +C GIG +++ Q ++ ++ K+ G+ G H
Sbjct: 292 ENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGD 351
Query: 674 PLYKLE 679
P +E
Sbjct: 352 PYNAIE 357
>pdb|2AHX|A Chain A, Crystal Structure Of Erbb4HER4 EXTRACELLULAR DOMAIN
pdb|2AHX|B Chain B, Crystal Structure Of Erbb4HER4 EXTRACELLULAR DOMAIN
Length = 617
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 10/126 (7%)
Query: 562 VKQKLQEQGFREESITTETYLNLRYEGTDTAIMVKK---RIAEDGSGCGYAVDFEKLFQQ 618
V Q Q + + E N +Y T A VKK D S C A K+ +
Sbjct: 235 VTQCPQTFVYNPTTFQLEHNFNAKY--TYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVE 292
Query: 619 EYGFKLQNRNILVCDVRVRGIGVTNILKPQAIEPTS-----GTPKVEGHYKVFFNGWHDA 673
E G K+ +C GIG +++ Q ++ ++ K+ G+ G H
Sbjct: 293 ENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGD 352
Query: 674 PLYKLE 679
P +E
Sbjct: 353 PYNAIE 358
>pdb|3U7U|A Chain A, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|B Chain B, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|C Chain C, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|D Chain D, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|E Chain E, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|F Chain F, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
Length = 615
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 10/126 (7%)
Query: 562 VKQKLQEQGFREESITTETYLNLRYEGTDTAIMVKK---RIAEDGSGCGYAVDFEKLFQQ 618
V Q Q + + E N +Y T A VKK D S C A K+ +
Sbjct: 234 VTQCPQTFVYNPTTFQLEHNFNAKY--TYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVE 291
Query: 619 EYGFKLQNRNILVCDVRVRGIGVTNILKPQAIEPTS-----GTPKVEGHYKVFFNGWHDA 673
E G K+ +C GIG +++ Q ++ ++ K+ G+ G H
Sbjct: 292 ENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGD 351
Query: 674 PLYKLE 679
P +E
Sbjct: 352 PYNAIE 357
>pdb|3U2P|A Chain A, Crystal Structure Of N-Terminal Three Extracellular
Domains Of Erbb4HER4
Length = 497
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 10/126 (7%)
Query: 562 VKQKLQEQGFREESITTETYLNLRYEGTDTAIMVKK---RIAEDGSGCGYAVDFEKLFQQ 618
V Q Q + + E N +Y T A VKK D S C A K+ +
Sbjct: 234 VTQCPQTFVYNPTTFQLEHNFNAKY--TYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVE 291
Query: 619 EYGFKLQNRNILVCDVRVRGIGVTNILKPQAIEPTS-----GTPKVEGHYKVFFNGWHDA 673
E G K+ +C GIG +++ Q ++ ++ K+ G+ G H
Sbjct: 292 ENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGD 351
Query: 674 PLYKLE 679
P +E
Sbjct: 352 PYNAIE 357
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,147,046
Number of Sequences: 62578
Number of extensions: 1441535
Number of successful extensions: 3640
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3637
Number of HSP's gapped (non-prelim): 10
length of query: 1173
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1063
effective length of database: 8,089,757
effective search space: 8599411691
effective search space used: 8599411691
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)