Query 001049
Match_columns 1173
No_of_seqs 336 out of 2039
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 14:24:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02666 5-oxoprolinase 100.0 7E-276 1E-280 2587.0 125.0 1170 1-1172 2-1272(1275)
2 KOG1939 Oxoprolinase [Amino ac 100.0 4E-240 9E-245 2043.2 91.0 1152 8-1172 2-1244(1247)
3 COG0145 HyuA N-methylhydantoin 100.0 2E-143 4E-148 1304.9 49.4 662 7-720 1-673 (674)
4 COG0146 HyuB N-methylhydantoin 100.0 3E-113 7E-118 996.8 45.5 428 733-1172 1-521 (563)
5 PF02538 Hydantoinase_B: Hydan 100.0 7E-106 1E-110 967.7 45.7 427 734-1172 1-518 (527)
6 PF01968 Hydantoinase_A: Hydan 100.0 5.2E-69 1.1E-73 605.1 1.9 284 235-535 1-290 (290)
7 PF05378 Hydant_A_N: Hydantoin 100.0 8.6E-44 1.9E-48 372.7 16.7 175 10-216 1-176 (176)
8 TIGR03123 one_C_unchar_1 proba 100.0 4.4E-38 9.6E-43 354.1 18.5 243 204-513 38-304 (318)
9 PF13941 MutL: MutL protein 97.7 0.00082 1.8E-08 80.6 17.7 248 11-335 3-272 (457)
10 TIGR01319 glmL_fam conserved h 97.5 0.007 1.5E-07 72.3 20.2 133 172-334 134-272 (463)
11 COG1548 Predicted transcriptio 96.9 0.013 2.8E-07 64.5 13.4 219 266-527 88-324 (330)
12 TIGR02529 EutJ ethanolamine ut 96.2 0.034 7.3E-07 62.0 11.5 65 460-529 173-239 (239)
13 PF01869 BcrAD_BadFG: BadF/Bad 94.7 0.018 4E-07 64.9 2.7 70 455-528 192-269 (271)
14 PRK15080 ethanolamine utilizat 94.3 0.55 1.2E-05 53.2 13.3 65 459-528 199-265 (267)
15 PF06406 StbA: StbA protein; 93.6 0.51 1.1E-05 54.9 11.5 39 489-527 276-316 (318)
16 COG2971 Predicted N-acetylgluc 92.4 0.26 5.6E-06 56.2 6.6 72 4-83 1-76 (301)
17 PRK00047 glpK glycerol kinase; 90.6 0.35 7.6E-06 59.5 5.8 75 452-530 372-448 (498)
18 TIGR03286 methan_mark_15 putat 90.5 0.48 1E-05 56.4 6.5 69 451-528 327-399 (404)
19 TIGR03192 benz_CoA_bzdQ benzoy 90.5 0.55 1.2E-05 53.8 6.7 71 451-529 212-285 (293)
20 TIGR03739 PRTRC_D PRTRC system 90.1 1.5 3.2E-05 51.0 10.0 48 479-528 269-316 (320)
21 COG4820 EutJ Ethanolamine util 89.9 2.1 4.6E-05 46.1 9.9 68 459-531 204-273 (277)
22 TIGR02350 prok_dnaK chaperone 89.4 3 6.5E-05 52.7 12.7 75 452-528 291-368 (595)
23 TIGR00241 CoA_E_activ CoA-subs 89.0 0.93 2E-05 50.7 7.0 69 451-528 176-247 (248)
24 PRK10939 autoinducer-2 (AI-2) 88.5 0.54 1.2E-05 58.2 5.2 86 8-98 3-97 (520)
25 PRK13930 rod shape-determining 88.4 2 4.4E-05 49.9 9.6 76 452-529 244-325 (335)
26 PRK13321 pantothenate kinase; 88.1 1 2.3E-05 50.7 6.7 63 10-83 2-64 (256)
27 PRK13318 pantothenate kinase; 87.8 1.5 3.3E-05 49.3 7.8 63 10-83 2-64 (258)
28 TIGR01311 glycerol_kin glycero 87.5 0.51 1.1E-05 58.0 4.1 75 452-530 368-444 (493)
29 TIGR02261 benz_CoA_red_D benzo 87.5 1.4 3E-05 49.9 7.1 72 450-528 182-260 (262)
30 COG1924 Activator of 2-hydroxy 87.2 1.5 3.2E-05 51.5 7.2 71 450-528 313-386 (396)
31 TIGR00241 CoA_E_activ CoA-subs 87.2 2.3 4.9E-05 47.6 8.7 31 298-333 82-113 (248)
32 COG1940 NagC Transcriptional r 87.1 1.1 2.4E-05 51.5 6.5 55 6-61 4-58 (314)
33 smart00732 YqgFc Likely ribonu 86.7 1.7 3.8E-05 40.9 6.4 47 10-59 3-49 (99)
34 PF00370 FGGY_N: FGGY family o 86.0 0.65 1.4E-05 51.5 3.6 74 9-87 1-81 (245)
35 COG1924 Activator of 2-hydroxy 85.7 1.8 3.8E-05 50.9 6.9 49 8-60 135-183 (396)
36 COG1070 XylB Sugar (pentulose 84.9 1.4 3.1E-05 54.4 6.2 87 7-98 3-97 (502)
37 TIGR01314 gntK_FGGY gluconate 84.9 0.89 1.9E-05 56.1 4.3 74 453-530 371-446 (505)
38 TIGR02259 benz_CoA_red_A benzo 84.3 1.4 3.1E-05 52.3 5.3 171 290-528 250-430 (432)
39 TIGR01315 5C_CHO_kinase FGGY-f 83.4 1.1 2.4E-05 55.8 4.4 84 10-99 2-92 (541)
40 PRK10331 L-fuculokinase; Provi 83.4 1.3 2.8E-05 54.2 4.8 81 9-96 3-92 (470)
41 PRK13317 pantothenate kinase; 83.1 2.5 5.4E-05 48.4 6.6 75 451-530 192-272 (277)
42 TIGR02628 fuculo_kin_coli L-fu 80.7 3.9 8.4E-05 50.0 7.6 81 9-96 2-91 (465)
43 TIGR01234 L-ribulokinase L-rib 80.1 2 4.3E-05 53.6 4.9 74 452-530 405-481 (536)
44 PRK04123 ribulokinase; Provisi 79.2 2.3 5E-05 53.1 5.0 74 452-530 408-484 (548)
45 COG4972 PilM Tfp pilus assembl 78.9 2.8 6.1E-05 48.5 5.1 179 238-516 140-320 (354)
46 PRK13317 pantothenate kinase; 78.2 2 4.4E-05 49.1 3.8 29 7-37 1-29 (277)
47 PLN02295 glycerol kinase 77.6 2.3 5E-05 52.7 4.4 73 452-528 376-455 (512)
48 PTZ00294 glycerol kinase-like 77.0 4.9 0.00011 49.7 7.0 75 452-530 375-451 (504)
49 PLN02669 xylulokinase 76.4 8.5 0.00018 48.3 8.9 79 1-85 1-99 (556)
50 PRK09557 fructokinase; Reviewe 76.4 4.4 9.6E-05 46.4 6.0 49 9-59 1-49 (301)
51 PRK15027 xylulokinase; Provisi 76.2 4.3 9.3E-05 49.9 6.2 75 452-530 356-432 (484)
52 PRK13311 N-acetyl-D-glucosamin 75.9 4.5 9.8E-05 45.3 5.7 49 9-59 1-49 (256)
53 PRK09698 D-allose kinase; Prov 73.0 7.3 0.00016 44.6 6.6 52 6-59 2-53 (302)
54 KOG0100 Molecular chaperones G 72.6 3.8 8.3E-05 48.2 4.1 36 292-329 207-242 (663)
55 PRK14101 bifunctional glucokin 72.6 7.3 0.00016 49.7 7.1 48 7-58 17-64 (638)
56 TIGR00555 panK_eukar pantothen 70.3 4.3 9.3E-05 46.5 3.8 73 451-529 200-279 (279)
57 PRK13310 N-acetyl-D-glucosamin 69.6 7.4 0.00016 44.6 5.7 49 9-59 1-49 (303)
58 TIGR03286 methan_mark_15 putat 68.8 12 0.00026 44.9 7.2 18 313-330 145-162 (404)
59 TIGR03192 benz_CoA_bzdQ benzoy 68.4 6.9 0.00015 45.1 4.9 28 8-37 32-59 (293)
60 TIGR01175 pilM type IV pilus a 65.8 47 0.001 38.8 11.4 24 313-336 189-213 (348)
61 PRK13928 rod shape-determining 65.4 6 0.00013 46.2 3.9 63 466-529 252-320 (336)
62 TIGR00555 panK_eukar pantothen 64.0 26 0.00057 40.2 8.5 29 10-39 2-30 (279)
63 PRK13929 rod-share determining 63.6 13 0.00027 43.6 6.1 60 469-529 258-323 (335)
64 COG0443 DnaK Molecular chapero 63.2 5.8 0.00012 50.1 3.4 60 468-528 291-353 (579)
65 TIGR00744 ROK_glcA_fam ROK fam 62.8 15 0.00033 42.3 6.5 37 455-496 225-261 (318)
66 PF06723 MreB_Mbl: MreB/Mbl pr 62.7 18 0.0004 42.4 7.1 85 249-337 74-171 (326)
67 PRK00292 glk glucokinase; Prov 61.7 16 0.00036 42.2 6.5 47 8-58 2-49 (316)
68 TIGR01312 XylB D-xylulose kina 61.3 12 0.00026 45.8 5.6 75 452-530 359-435 (481)
69 PTZ00009 heat shock 70 kDa pro 61.3 9.1 0.0002 49.1 4.7 42 288-330 171-212 (653)
70 PTZ00186 heat shock 70 kDa pre 58.9 9.4 0.0002 48.9 4.2 39 289-330 192-230 (657)
71 TIGR01174 ftsA cell division p 57.3 26 0.00056 41.6 7.3 23 312-334 196-219 (371)
72 PRK13917 plasmid segregation p 57.0 45 0.00098 39.4 9.2 38 489-528 295-332 (344)
73 PRK11678 putative chaperone; P 56.3 11 0.00025 46.0 4.2 41 287-330 187-227 (450)
74 PRK13927 rod shape-determining 54.5 11 0.00024 43.9 3.5 40 489-529 280-321 (334)
75 PRK00290 dnaK molecular chaper 54.1 13 0.00028 47.4 4.4 39 289-330 165-203 (627)
76 PLN03184 chloroplast Hsp70; Pr 53.4 13 0.00029 47.7 4.3 39 289-330 204-242 (673)
77 PF03445 DUF294: Putative nucl 53.2 52 0.0011 33.7 7.7 92 451-573 14-105 (138)
78 CHL00094 dnaK heat shock prote 52.7 13 0.00028 47.4 4.0 39 289-330 167-205 (621)
79 PRK01433 hscA chaperone protei 52.5 15 0.00033 46.6 4.5 41 287-330 171-211 (595)
80 PRK12408 glucokinase; Provisio 52.3 21 0.00046 41.9 5.4 24 7-30 15-38 (336)
81 PTZ00400 DnaK-type molecular c 51.8 14 0.0003 47.6 4.0 40 288-330 205-244 (663)
82 PRK05082 N-acetylmannosamine k 51.6 24 0.00051 40.2 5.6 49 10-59 3-51 (291)
83 PRK13410 molecular chaperone D 51.4 14 0.00031 47.5 4.1 39 289-330 167-205 (668)
84 TIGR02261 benz_CoA_red_D benzo 51.0 28 0.0006 39.6 5.8 21 9-29 2-22 (262)
85 TIGR01991 HscA Fe-S protein as 51.0 17 0.00036 46.2 4.5 39 289-330 161-199 (599)
86 TIGR02259 benz_CoA_red_A benzo 50.8 42 0.0009 40.4 7.3 32 8-39 2-33 (432)
87 PRK09472 ftsA cell division pr 50.7 16 0.00035 44.2 4.2 26 312-337 204-230 (420)
88 PF01968 Hydantoinase_A: Hydan 50.4 10 0.00022 43.6 2.3 20 10-30 79-98 (290)
89 PRK13411 molecular chaperone D 50.2 15 0.00034 47.0 4.1 39 290-330 166-204 (653)
90 COG1069 AraB Ribulose kinase [ 49.6 10 0.00022 46.7 2.2 89 7-101 2-98 (544)
91 PRK05183 hscA chaperone protei 48.7 18 0.00038 46.2 4.3 75 452-528 295-372 (616)
92 TIGR00904 mreB cell shape dete 48.3 16 0.00036 42.5 3.7 61 468-529 258-324 (333)
93 TIGR02851 spore_V_T stage V sp 48.2 54 0.0012 35.3 7.2 87 746-847 54-147 (180)
94 PF05378 Hydant_A_N: Hydantoin 47.5 13 0.00028 39.7 2.4 16 315-330 2-17 (176)
95 PF00480 ROK: ROK family; Int 46.6 20 0.00043 37.4 3.7 46 12-60 1-46 (179)
96 PRK13331 pantothenate kinase; 42.9 52 0.0011 37.3 6.4 59 9-85 8-66 (251)
97 PF11104 PilM_2: Type IV pilus 42.4 2.1E+02 0.0046 33.5 11.7 97 220-337 109-206 (340)
98 PF10144 SMP_2: Bacterial viru 41.1 29 0.00064 38.2 4.0 59 772-853 88-146 (210)
99 PF00012 HSP70: Hsp70 protein; 40.9 20 0.00044 45.0 3.1 61 467-528 309-372 (602)
100 KOG0101 Molecular chaperones H 40.4 27 0.00058 44.2 3.9 42 287-329 173-214 (620)
101 TIGR03123 one_C_unchar_1 proba 40.2 22 0.00048 41.5 3.0 20 10-30 130-149 (318)
102 TIGR00749 glk glucokinase, pro 40.1 38 0.00081 39.3 4.9 37 456-495 234-270 (316)
103 PRK10719 eutA reactivating fac 39.6 47 0.001 40.7 5.7 28 311-338 145-173 (475)
104 PF02782 FGGY_C: FGGY family o 37.5 68 0.0015 34.0 6.1 74 452-529 118-193 (198)
105 PF06277 EutA: Ethanolamine ut 36.3 61 0.0013 39.8 5.9 53 287-344 123-176 (473)
106 cd04742 NPD_FabD 2-Nitropropan 35.5 80 0.0017 38.4 6.7 54 170-223 47-102 (418)
107 PF06792 UPF0261: Uncharacteri 34.5 2.8E+02 0.0061 33.7 10.9 95 464-567 72-170 (403)
108 PRK11477 carbohydrate diacid t 33.8 93 0.002 37.1 7.0 71 770-853 22-96 (385)
109 COG0849 ftsA Cell division ATP 32.7 41 0.0009 40.8 3.8 26 312-337 203-229 (418)
110 PF03991 Prion_octapep: Copper 31.6 24 0.00052 19.0 0.7 8 1165-1172 1-8 (8)
111 cd05401 NT_GlnE_GlnD_like Nucl 31.5 2.3E+02 0.0049 29.7 8.7 47 451-497 18-66 (172)
112 PF08841 DDR: Diol dehydratase 31.0 55 0.0012 37.6 4.1 46 287-335 112-159 (332)
113 PF02541 Ppx-GppA: Ppx/GppA ph 30.2 62 0.0014 36.9 4.6 26 310-335 110-136 (285)
114 PRK13324 pantothenate kinase; 30.1 1.3E+02 0.0029 34.1 7.1 65 10-84 2-66 (258)
115 KOG1794 N-Acetylglucosamine ki 28.8 1.8E+02 0.004 33.7 7.6 41 455-495 230-273 (336)
116 cd00951 KDGDH 5-dehydro-4-deox 27.6 2.7E+02 0.0058 32.1 9.1 54 170-223 17-75 (289)
117 PLN02913 dihydrofolate synthet 26.6 1.6E+02 0.0035 36.8 7.6 76 50-186 58-143 (510)
118 cd03411 Ferrochelatase_N Ferro 26.1 1.7E+02 0.0038 30.5 6.6 91 166-273 64-154 (159)
119 PRK09732 hypothetical protein; 26.0 2.8E+02 0.0061 28.5 7.8 73 770-852 28-114 (134)
120 PF12390 Se-cys_synth_N: Selen 25.6 86 0.0019 25.3 3.3 25 938-962 15-39 (40)
121 TIGR02814 pfaD_fam PfaD family 25.6 1.7E+02 0.0037 36.0 7.2 54 170-223 52-107 (444)
122 smart00732 YqgFc Likely ribonu 25.6 62 0.0013 30.3 2.9 21 313-333 2-24 (99)
123 TIGR00262 trpA tryptophan synt 25.5 3.4E+02 0.0075 30.8 9.3 97 164-285 117-214 (256)
124 TIGR01499 folC folylpolyglutam 25.3 84 0.0018 37.6 4.7 54 82-186 31-84 (397)
125 COG1077 MreB Actin-like ATPase 25.3 80 0.0017 37.0 4.1 41 488-529 286-328 (342)
126 PRK13320 pantothenate kinase; 25.2 1.9E+02 0.0042 32.5 7.2 30 8-38 2-31 (244)
127 COG0554 GlpK Glycerol kinase [ 25.0 62 0.0014 39.7 3.4 30 7-36 4-33 (499)
128 PF05651 Diacid_rec: Putative 24.6 96 0.0021 31.9 4.2 73 769-853 16-91 (135)
129 PRK10640 rhaB rhamnulokinase; 23.9 3.3E+02 0.0071 33.6 9.5 97 421-530 321-419 (471)
130 cd03412 CbiK_N Anaerobic cobal 23.3 1.6E+02 0.0035 29.7 5.5 68 172-240 54-123 (127)
131 PRK06033 hypothetical protein; 23.2 1.5E+02 0.0033 27.9 4.9 29 791-824 12-40 (83)
132 PF01052 SpoA: Surface present 23.1 1.4E+02 0.0031 27.0 4.7 45 792-850 14-58 (77)
133 COG0329 DapA Dihydrodipicolina 23.0 1.6E+02 0.0036 34.1 6.3 52 171-222 22-78 (299)
134 COG0145 HyuA N-methylhydantoin 23.0 60 0.0013 41.9 2.9 20 10-30 280-299 (674)
135 KOG1322 GDP-mannose pyrophosph 22.5 3.1E+02 0.0066 32.5 8.0 51 176-229 43-94 (371)
136 PTZ00288 glucokinase 1; Provis 22.5 1.4E+02 0.003 36.3 5.7 29 456-486 298-326 (405)
137 PRK08983 fliN flagellar motor 22.0 1.9E+02 0.0042 29.5 5.7 47 790-850 55-101 (127)
138 CHL00200 trpA tryptophan synth 21.8 5.7E+02 0.012 29.2 10.1 116 162-304 119-235 (263)
139 PLN02914 hexokinase 21.5 1.4E+02 0.0031 37.1 5.7 18 313-330 96-113 (490)
140 PRK00047 glpK glycerol kinase; 21.5 2.4E+02 0.0052 34.9 7.7 84 4-92 1-91 (498)
141 PRK08916 flagellar motor switc 21.3 1.6E+02 0.0035 29.6 4.9 30 790-824 49-78 (116)
142 TIGR02627 rhamnulo_kin rhamnul 21.3 1.5E+02 0.0032 36.3 5.7 95 423-530 335-431 (454)
143 COG0837 Glk Glucokinase [Carbo 21.2 1.7E+02 0.0037 34.1 5.7 47 9-60 8-55 (320)
144 PRK11246 hypothetical protein; 21.2 1.1E+02 0.0023 34.1 3.9 79 750-852 45-145 (218)
145 PRK02794 DNA polymerase IV; Pr 21.2 7.8E+02 0.017 29.8 11.9 83 546-639 287-372 (419)
146 TIGR02480 fliN flagellar motor 21.0 2.1E+02 0.0045 26.3 5.3 44 792-849 14-57 (77)
147 PLN02881 tetrahydrofolylpolygl 20.9 1.2E+02 0.0025 38.2 4.7 48 50-105 42-97 (530)
148 PRK14061 unknown domain/lipoat 20.9 1.1E+02 0.0024 38.5 4.6 61 768-851 84-144 (562)
149 PF00370 FGGY_N: FGGY family o 20.7 1.3E+02 0.0027 33.4 4.6 21 314-334 2-24 (245)
150 TIGR02627 rhamnulo_kin rhamnul 20.7 4E+02 0.0088 32.5 9.4 50 11-60 1-61 (454)
151 PF05226 CHASE2: CHASE2 domain 20.5 3E+02 0.0065 31.6 7.8 56 169-225 59-117 (310)
152 PRK13111 trpA tryptophan synth 20.3 2.6E+02 0.0056 31.9 7.0 115 162-304 117-232 (258)
153 PLN02362 hexokinase 20.1 1.9E+02 0.0041 36.3 6.3 18 313-330 96-113 (509)
154 PRK04123 ribulokinase; Provisi 20.0 3.1E+02 0.0068 34.4 8.4 87 7-98 2-102 (548)
No 1
>PLN02666 5-oxoprolinase
Probab=100.00 E-value=6.8e-276 Score=2587.05 Aligned_cols=1170 Identities=81% Similarity=1.264 Sum_probs=1070.4
Q ss_pred CCCCCCCceEEEEeccCccccEEEEecC-CceEEEEEeccCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEE
Q 001049 1 MGSVKEEKLRFCIDRGGTFTDVYAEIPG-QLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWI 79 (1173)
Q Consensus 1 ~~~~~~~~~rigIDvGGTfTD~v~~~~~-g~~~~~~K~~st~p~~~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~v~~i 79 (1173)
|+|-.+++||||||+||||||+|++|++ ++ +++.|+|||||+|+++++++||++++++++++.++...++++++|+.|
T Consensus 2 ~~~~~~~~~rigIDvGGTFTD~v~~~~~~~~-~~~~K~~sttp~d~~~gv~~Gi~~~l~~~~~~~~~~~~~~~~~~i~~v 80 (1275)
T PLN02666 2 MGSRGSRKFRFCIDRGGTFTDVYAEVPGGSD-FRVLKLLSVDPANYDDAPREGIRRILEEVTGKKIPRSAKIPTERIEWI 80 (1275)
T ss_pred CCCCCCCCEEEEEECCcCCEeEEEEecCCCe-EEEEEeCCCCCCChhHHHHHHHHHHHHHHhcCCcccccCCChHHccEE
Confidence 7888889999999999999999999754 55 789999997799999999999999999887655555556777899999
Q ss_pred EEehhHhhhHhhhcCCCcEEEEEccCchhhhhhccCCCCCCccccccCCCCcceeEEEeeEeeecccccc-cccccceee
Q 001049 80 RMGTTVATNALLERKGERIALCVTRGFKDLLQIGNQARPQIFDLTVSTPSNLYEEVIEVDERVELVLENE-KENQESLVK 158 (1173)
Q Consensus 80 ~hGTT~atNAllerkg~rvglitt~GfrD~l~igr~~rp~~~~~~~~~P~~l~~~~~~v~eRi~~~g~~~-~~~~~~~v~ 158 (1173)
+||||++|||||||||+|||||||+||||+|+|||++||++|++++.+|.||+++++||+||++++|... ...+-+.++
T Consensus 81 ~hGTT~atNAllerkGa~v~litT~GfrD~l~igr~~r~~~~~~~~~~p~pl~~~~~ev~eR~~~~~~~~~~~~~G~~~~ 160 (1275)
T PLN02666 81 RMGTTVATNALLERKGERIALCVTKGFKDLLQIGNQARPNIFDLTVSKPSNLYEEVVEVDERVVLALEEDGDDAGGSVVK 160 (1275)
T ss_pred EEechHHHHHHHhccCCcEEEEecccchhheeccccCCCccccccccCCccchhhEEeeCceEecccccccccccCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999973000 000011222
Q ss_pred cccCceeEEecCCCHHHHHHHHHHHHHCCCcEEEEEccCcCCCchhHHHHHHHHHhcCCceeeeeccccCcCCcccchhH
Q 001049 159 GVSGELVRVVKPVNEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGLGFRHVSLSSALTPMVRAVPRGLT 238 (1173)
Q Consensus 159 G~~g~~g~v~~plde~~v~~~~~~l~~~gv~avAV~~l~S~~np~hE~rv~ei~~~~~~~~Vs~S~ei~p~~~e~eR~~T 238 (1173)
|..|.-.++++||||++|++++++|+++|+++|||||+|||+||+||+++++|++++...+|||||||+|++|||||++|
T Consensus 161 g~~G~~~~v~~plde~~v~~~~~~l~~~gv~avAV~~l~S~~NP~HE~~v~ei~~e~~~~~VslShei~~~~~e~eR~~T 240 (1275)
T PLN02666 161 GVTGELVEVVKPLDEEALRPLLQGLLDKGIRSLAVVLMHSYTYPAHERAVGKLARSMGFKQVSLSSALVPMVRAVPRGHT 240 (1275)
T ss_pred ccCCcceeEecCCCHHHHHHHHHHHHHcCCCEEEEEeecCcCChHHHHHHHHHHHhcCCCcEEEcchhhhhccccchHHH
Confidence 22221117999999999999999999999999999999999999999999999998744589999999999999999999
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHhcCCCceEEEEEcCCCccccccccccceecccchhhHHHHHHhcccccCCCCEEEEe
Q 001049 239 ASVDAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFGLETEKPLIGFD 318 (1173)
Q Consensus 239 tvlNAyl~p~~~~yl~~l~~~L~~~~~~~~l~im~s~GG~~s~~~~~pv~ti~SGPa~Gv~Ga~~l~~~~~g~~~~I~~D 318 (1173)
|+|||||+|+|++||++|+++|++.++++||+|||||||+|++++++|++|++||||||++|+++++++..+.+|+|+||
T Consensus 241 avlnAyl~p~~~~yl~~l~~~l~~~g~~~~l~im~sdGG~~~~~~a~~~~ti~SGPAagv~Gaa~l~~~~~g~~~~I~~D 320 (1275)
T PLN02666 241 ASVDAYLTPVIKEYLSGFLSGFDDGLGDVNVLFMQSDGGLTPESRFSGHKAILSGPAGGVVGYAQTTFGLETEKPVIGFD 320 (1275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCcCCHHHhcCCCeEEECHHHHHHHHHHHhccccCCCCEEEEe
Confidence 99999999999999999999999988889999999999999999999999999999999999999884356789999999
Q ss_pred cCCCceEEeeeeceeeeeeeeEEccEEEeecceeeEEEeccCCcEEEEeCCeEEECccccCCCCCcceeccCCccccchH
Q 001049 319 MGGTSTDVSRYAGSYEQVLETQIAGAIIQAPQLDINTVAAGGGSNLMFQLGAFRVGPESVGAHPGPVCYRKGGDLAVTDA 398 (1173)
Q Consensus 319 mGGTStDv~li~G~~~~~~~~~i~g~~~~~p~~di~sIGaGGGSia~v~~G~l~VGP~SAGa~PGPacYg~GG~pTvTDA 398 (1173)
|||||||||+|+|.+..+.+.+|+|+|+++||+||+|||+|||||+|+++|.|+|||+|||++|||+||++||+||+|||
T Consensus 321 mGGTTtDv~li~g~~~~~~~~~i~g~~v~~p~~di~sIGaGGGSi~~vd~g~l~VGP~SaGa~PGPacy~~GG~pTvTDA 400 (1275)
T PLN02666 321 MGGTSTDVSRYDGSYEQVLETQTAGVIIQAPQLDINTVAAGGGSKLKFQFGAFRVGPESVGAHPGPVCYRKGGELAVTDA 400 (1275)
T ss_pred cCCceeeeEEEcCceeEeeeeEECcEEEEecceeEEEEcCCCceEEEEcCCeEEECchhcccCccchhhhcCCcceeccH
Confidence 99999999999988777788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccccCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHHhhccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001049 399 NLILGFVIPDYFPSIFGPNEDQPLDINATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGFVNVANETMCRPIRQLTE 478 (1173)
Q Consensus 399 ~lvLG~l~p~~fl~~~g~gG~~~Ld~~~a~~a~~~ia~~lg~~~~~~~~~~~gl~~eeaA~gi~~ia~~~Ma~air~~~~ 478 (1173)
||+||||||++|+++++++|+++||+++|++||+++|++|+..-++.....+|++++++|++|++++|++|+++||.+++
T Consensus 401 ~l~LG~l~p~~f~~~~~~gg~~~ld~~~A~~a~~~la~~l~~~~~~~~~~~~g~~~e~aA~~i~~ia~~~m~~air~i~~ 480 (1275)
T PLN02666 401 NLVLGRVIPDYFPSIFGPNEDEPLDLEATRAAFEALAAQINSYRKSQDPSAKDMSVEEVALGFVRVANEAMCRPIRQLTE 480 (1275)
T ss_pred hhhhhhcCccccccccCccccccCCHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888899999999999999999999995322223334678999999999999999999999999999
Q ss_pred HhCCCCCCceEEEEcCchhhhHHHHHHHcCCCEEEECCCCCccchhcccccceeEEEEEEEeeccCCCCHHHHHHHHHHH
Q 001049 479 MKGHETRNHALACFGGAGPQHACAIARSLGMREVLIHRFCGILSAYGMGLADVVEEAQEPYSAVYGPESVLEVSRREGIL 558 (1173)
Q Consensus 479 ~rG~dprdf~LvafGGaGplha~~lA~~lGi~~VivP~~~~v~sA~G~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~l 558 (1173)
+||+|||||+|++||||||+|||.||++|||++|+||++++||||||+++||+++++++++...+++.+.+.+++.|++|
T Consensus 481 ~~G~dpr~~~l~afGGagp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ad~~~d~~~~~~~~~~~~~~~~l~~~~~~L 560 (1275)
T PLN02666 481 MKGYETANHALACFGGAGPQHACAIARALGMSEVFVHRYCGILSAYGMGLADVVAEAQEPYAAVYGPESLAEASRREDAL 560 (1275)
T ss_pred HcCCCCCCceEEEecCcHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhhhhhhhhhhhhccccCccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEEEeeeecCeeEEEEEecccccCCCcccHHHHHHHHHHHHhccccCCCcEEEEEEEEEE
Q 001049 559 SKQVKQKLQEQGFREESITTETYLNLRYEGTDTAIMVKKRIAEDGSGCGYAVDFEKLFQQEYGFKLQNRNILVCDVRVRG 638 (1173)
Q Consensus 559 ~~~a~~~l~~~G~~~~~~~~~~~~d~RY~GQ~~~l~v~~~~~~~~~~~~~~~~F~~~h~~~yg~~~~~~~vei~~~rv~~ 638 (1173)
+++|+++|.++|+.++++++++++||||.||.|+|+||+|.....+.+++.++||++|+++|||..++.+||+++|||++
T Consensus 561 ~~~a~~~l~~~g~~~~~~~~~~~~d~RY~GQ~~~l~v~~~~~~~~~~~~l~~~F~~~h~~~yg~~~~~~~veiv~lrv~~ 640 (1275)
T PLN02666 561 AEKVRQKLQEQGFREDNITTETYLNLRYEGTDTAIMVAEPENGDGSDGDYAAAFVKLFRREYGFKLQNRDILIDDVRVRG 640 (1275)
T ss_pred HHHHHHHHHHcCCCcccEEEEEEEEEEECCCCEEEEeecCcccccCHHHHHHHHHHHHHHHhCcCCCCCcEEEEEEEEEE
Confidence 99999999999999999999999999999999999999986433345689999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCC-CCCCCccceEEEEe-CcEEEeeEEecCCCCCCCeeecceEEEeCCeEEEECCCcEEEEecCCcE
Q 001049 639 IGVTNILKPQAIEPT-SGTPKVEGHYKVFF-NGWHDAPLYKLENLGYGHVMPGPAIIMNGNSTVIVEPNCKAVITKYGNI 716 (1173)
Q Consensus 639 ~~~~~~~~~~~~~~~-~~~~~~~~~r~v~~-~~~~~~pVy~r~~L~~g~~i~GPAiIe~~~tT~vv~pg~~~~vd~~g~l 716 (1173)
+++.++|.+...... ..++++.++|++|| ++|+++|||+|++|++|++|+||||||+++||+||+|||++++|++|||
T Consensus 641 ~g~~~~~~~~~~~~~~~~~~~~~~~r~v~~~~~~~~~~vy~r~~L~~G~~i~GPAiie~~~sT~vv~pg~~~~vd~~g~l 720 (1275)
T PLN02666 641 IGVTNILKPLPLDAASGGLPEPERTTKVYFENGWHDTPVYKLENLGPGHEIPGPAIIMNGNSTVVVEPGCKAIVTKYGNI 720 (1275)
T ss_pred EEecCCCCcCccccccCCCCCCcceEEEEECCcEEEeeEEEHHHCCCcCEeecCEEEecCCceEEECCCCEEEECCCCcE
Confidence 998876543322211 11234557899999 7899999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccc-----cccccCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccceecCCCCCeecccCCCc
Q 001049 717 KIEIESISSTIN-----IAENIADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVANAPHVP 791 (1173)
Q Consensus 717 ~i~~~~~~~~~~-----~~~~~~DPIt~eVi~~~L~siaeEM~~~l~RtA~Spii~e~~Dfs~aI~d~~G~lva~~~~ip 791 (1173)
+|++........ ....++|||++|||||||++|+|||+.+|+|||+||+|||++||||+|||++|++++|+.++|
T Consensus 721 ~i~~~~~~~~~~~~~~~l~~~~~DpitleIi~~~l~aiaeEM~~~l~RtA~Sp~i~E~~D~s~ai~d~~G~lva~~~~ip 800 (1275)
T PLN02666 721 KIEVENSAEQSAEETVKAAEKKADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVANAPHVP 800 (1275)
T ss_pred EEeecccccccccccccccccCCCcHhHHHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceEEECCCCCeeecCCCce
Confidence 998753222211 124568999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccchHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCCCCeEEEEeeeeCCeEEEEEeccccccccCCCCCCCCCCCCc
Q 001049 792 VHLGAMSSTVRWQLKYWRHNLNEGDVLVSNHPCAGGSHLPDITVITPVFDNGKLVFFVASRGHHAEIGGITPGSMPPFSK 871 (1173)
Q Consensus 792 ~h~gsm~~~v~~~l~~~~~~l~pGDv~i~NDPy~Gg~Hl~Dv~v~~PVF~~Gelv~~~a~~~H~~DiGG~~pGs~~~~at 871 (1173)
+|+|+|+.+|++++++|+++|+||||||+||||.||+|+||+++++|||++|||++|+++++||+||||++||||+++||
T Consensus 801 ~hlgsm~~~v~~~l~~~~~~l~pGDV~i~NDPy~GgtHl~Dv~~~~PVF~~G~lv~f~a~~~H~~DiGG~~PGs~~~~at 880 (1275)
T PLN02666 801 VHLGAMSSTVRWQLEYWGENLNEGDVLVTNHPQAGGSHLPDITVITPVFRDGKIVFFVASRGHHADIGGITPGSMPPFSK 880 (1275)
T ss_pred EEeecCHHHHHHHHHhccCCCCCCCEEEEcCCcCCCCcCCceEEEeCeEECCEEEEEEEEeeeeeccCCCCCCCCCCCCC
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccCcccccEEEEECCeeCHHHHHHHHcCCCC-CCCCCCCCCccCcccchhhHHHHHHHHHHHHHHHHHHHHHHCHHH
Q 001049 872 SIWEEGAAIKAFKLVEKGIFQEEGITKLLLDPSS-EDSAHKIPGTRRLQDNLSDLRAQVAANQRGISLIKELIEQYGLKT 950 (1173)
Q Consensus 872 di~qEGl~iPp~Kl~~~G~~~~d~~~~li~~~~~-~~~~p~~~n~R~p~~~~gDl~Aqiaa~~~g~~rl~eLi~ryG~d~ 950 (1173)
|||||||+|||+||+++|++|+|.|+++|++ |+ ...+|+.+++|+|+++++||+||||||++|++||+|||+|||.|+
T Consensus 881 ~i~qEGLriPpvKL~~~G~~~~d~v~~li~~-N~~~~~~~~~p~~R~P~~~~gDl~AqiAA~~~g~~Rl~el~~~yG~~~ 959 (1275)
T PLN02666 881 TIWEEGAAIKAFKLVEGGVFQEEGITKLLQA-PGSDETAPKIPGTRRLQDNLSDLRAQVAANQRGISLIKELIDEYGLGT 959 (1275)
T ss_pred CHHHCccccccEEEEECCEECHHHHHHHHHh-CcccccccCCCCCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Confidence 9999999999999999999999757888887 43 113455556799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--------------c-ccCcc-------cc----------------cCCcC-----
Q 001049 951 VQAYMTYVQLNAEEAVREMLKSVA--------------A-KVSSE-------SA----------------KDGER----- 987 (1173)
Q Consensus 951 v~~~~~~i~~~sE~~~R~~I~~iP--------------d-~y~~~-------~~----------------~~Gs~----- 987 (1173)
|+++++++++|||++||++|++|| | .|+.+ |+ |+||+
T Consensus 960 v~~~~~~~~~~se~~~R~~I~~lP~~~~~~~~~~~~~~dG~y~~~~~lDd~~pi~v~v~vt~~gd~i~vDftGT~pq~~g 1039 (1275)
T PLN02666 960 VQAYMGHVQANAELAVREMLKSVAARVSSESPTFGDGSSVTLEAEDYMDDGSPIHLTLTIDRRKGSAVFDFEGTSPEVYG 1039 (1275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCceEEEEEEecCCcEEEEEEEEEECCCEEEEEeCCCchhcCC
Confidence 999999999999999999999998 6 35422 22 55654
Q ss_pred ------------------------------------------------CCccccccchhhhHHHHHHHHHHHHhhccCCC
Q 001049 988 ------------------------------------------------NFAAVVGGNVLTSQRITDVVLTAFQACACSQG 1019 (1173)
Q Consensus 988 ------------------------------------------------~paa~~~~~~~~~~~i~d~v~~Al~~~a~~~g 1019 (1173)
+|+|++++++.++++++|++++||+++|++++
T Consensus 1040 ~iN~~~~~t~aa~~~~l~~~~~pdiP~N~G~~rpi~v~~P~Gtilnp~~PAav~~~~~~~~~~v~d~v~~Al~~~A~~~g 1119 (1275)
T PLN02666 1040 NWNAPPAVTAAAVIYCLRCLVDVDIPLNQGCLAPVTIRIPPGSFLSPSDKAAVVGGNVLTSQRVTDVVLTAFQACACSQG 1119 (1275)
T ss_pred CcCcCHHHHHHHHHHHHHHHcCCCCCCCCeeeeeEEEEcCCCCeeCCCCCCceeccchhHHHHHHHHHHHHHHHHhhccC
Confidence 78888888889999999999999999999999
Q ss_pred CccceeecccceEEEEecccccCCCCCCCCCCCccCCCCCCCCCChhhhcccCcEEEEEEeeecCCCCCCcccCcCceEE
Q 001049 1020 CMNNLTFGDSTFGYYETIGGGSGAGPTWDGTSGVQCHMTNTRMTDPEIFEQRYPVFLHKFGLREKSGGAGLHRGGDGLVR 1099 (1173)
Q Consensus 1020 ~~~~~~~g~~~f~~~~~~~GG~GA~~~~DG~~~~~~~~~~~~~~~vE~~E~~~Pv~v~~~~l~~DSGGaG~~RGG~G~~~ 1099 (1173)
++++++|+.++|.++++++||+||++++||+|+++++++|++|+|+|++|++||++|++|+|++||||+||||||+|+++
T Consensus 1120 ~~~~~~~~g~~~~~~e~~~GG~GA~~~~DG~~~~~~~~~~~~~~pvE~~E~~~Pl~v~~~~l~~dSGGaGk~RGG~G~~~ 1199 (1275)
T PLN02666 1120 CMNNLTFGDDTFGYYETIAGGAGAGPTWDGTSGVQCHMTNTRITDPEILERRYPVLLHRFGLREGSGGDGLHRGGDGVVR 1199 (1275)
T ss_pred CcceEEEeCCcEEEEEecccccCCCCCCCCCCccccCCCCCCCCCHHHHhhhCCEEEEEEEeccCCCCCCccCCCCeEEE
Confidence 99999998889999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred EEEEeeceEEEEecCCcccCCCCCCCCCCCcCCceEEEcCCCeEEeeCCcceEEcCCCCEEEEecCCCcccCC
Q 001049 1100 EIEFRRPVVVSILSERRVHAPRGLKGGKDGARGANYLITKDKRKVYLGGKNTVQVQPGEILQILTPAGGGWGS 1172 (1173)
Q Consensus 1100 ~~~~l~~~~~~~~~dr~~~~p~Gl~GG~~G~~~~~~~~~~~g~~~~~~~~~~~~l~~Gd~l~~~t~GGGG~Gd 1172 (1173)
+|+++.+..+++++||++++|||+.||.+|+++.+++++++++++.++++..+.|++||+|+++|||||||||
T Consensus 1200 ~~~~l~~~~~~~~~dr~~~~p~Gl~GG~~G~~~~~~i~~~~~~~~~l~~~~~~~l~~GD~l~~~t~GGGG~Gd 1272 (1275)
T PLN02666 1200 EIEFRRPVTVSILSERRVHAPRGLAGGGDGARGANLLIRKDGRRVNLGGKNTVHVEAGERLRILTPGGGGYGS 1272 (1275)
T ss_pred EEEECCCeEEEEEeCCCEeCCccccCCcCCcCCeEEEEcCCCcEEecCCcceEEECCCCEEEEECCCcCccCC
Confidence 9999999889999999999999999999999999999888877777777778899999999999999999998
No 2
>KOG1939 consensus Oxoprolinase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-240 Score=2043.17 Aligned_cols=1152 Identities=64% Similarity=1.032 Sum_probs=1073.7
Q ss_pred ceEEEEeccCccccEEEEecC-CceEEEEEeccCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEEehhHh
Q 001049 8 KLRFCIDRGGTFTDVYAEIPG-QLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRMGTTVA 86 (1173)
Q Consensus 8 ~~rigIDvGGTfTD~v~~~~~-g~~~~~~K~~st~p~~~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~v~~i~hGTT~a 86 (1173)
++||+||.||||||++..-++ .+ ..+.|.+|.+|.++.+++.|||+++|+...|+.+|++..++.+.|.+|++|||+|
T Consensus 2 ~~r~aIDrGGTFTDv~~~~~~~~~-~~v~KlLSvdP~nY~DAp~EgIRriLe~~~gk~ipr~~~ldts~i~~iRmGTTvA 80 (1247)
T KOG1939|consen 2 KLRFAIDRGGTFTDVIAFIPNRSE-VEVLKLLSVDPKNYDDAPTEGIRRILEEETGKKIPRGVPLDTSKISWIRMGTTVA 80 (1247)
T ss_pred CeEEEEcCCCceEEEEEecCCCCC-ceEEEEeecCcccCCCCcHHHHHHHHHHhhCCccCCCCccCccceeeEEecchhh
Confidence 589999999999999987554 45 7899999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcCCCcEEEEEccCchhhhhhccCCCCCCccccccCCCCcceeEEEeeEeeecccccccccccceeecccCceeE
Q 001049 87 TNALLERKGERIALCVTRGFKDLLQIGNQARPQIFDLTVSTPSNLYEEVIEVDERVELVLENEKENQESLVKGVSGELVR 166 (1173)
Q Consensus 87 tNAllerkg~rvglitt~GfrD~l~igr~~rp~~~~~~~~~P~~l~~~~~~v~eRi~~~g~~~~~~~~~~v~G~~g~~g~ 166 (1173)
|||||||||.|++||+|+||+|.|.||.|.||++||+.+++|.+|++.+.||+||+..+.+..++.+........|..-+
T Consensus 81 TNalLERkGer~a~i~tkGFkdll~IGnQaRP~iFdl~i~kp~~LY~~VvEvdeRV~l~~~~~~~~~~~~~~~~sGe~~r 160 (1247)
T KOG1939|consen 81 TNALLERKGERIALIITKGFKDLLLIGNQARPDIFDLNIRKPEVLYEDVVEVDERVVLEDQDEDPLDESAQIEVSGEFLR 160 (1247)
T ss_pred hhHHHhhcCCeEEEEecccchhhhhcccccCCceeeecccCcchhhhhheeccceeehhhhccCccccccccccCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999887766666444444445677779
Q ss_pred EecCCCHHHHHHHHHHHHHCCCcEEEEEccCcCCCchhHHHHHHHHHhcCCceeeeeccccCcCCcccchhHHHHHhcch
Q 001049 167 VVKPVNEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGLGFRHVSLSSALTPMVRAVPRGLTASVDAYLT 246 (1173)
Q Consensus 167 v~~plde~~v~~~~~~l~~~gv~avAV~~l~S~~np~hE~rv~ei~~~~~~~~Vs~S~ei~p~~~e~eR~~TtvlNAyl~ 246 (1173)
|++|+||+++++.++.|.++|+++|||||+|||..|.||+.+.+|++|.|+.+||+||++.|.++...|..|++.+|||.
T Consensus 161 v~kk~De~alr~~Lk~l~~~G~~siav~l~HSyt~P~HE~~v~kiA~e~GF~~vSLSs~l~PMik~vpR~~ta~adAYLt 240 (1247)
T KOG1939|consen 161 VEKKVDEEALRQDLKELYDKGVKSIAVVLLHSYTYPDHELEVGKIAKEIGFSHVSLSSKLMPMIKVVPRGFTACADAYLT 240 (1247)
T ss_pred EEccCCHHHHHHHHHHHHHcCcceEeeeeeccccCCcHHHHHHHHHHHhCccceechhccccceeeecccchhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEcCCCccccccccccceecccchhhHHHHHHhcccccCCCCEEEEecCCCceEE
Q 001049 247 PVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDV 326 (1173)
Q Consensus 247 p~~~~yl~~l~~~L~~~~~~~~l~im~s~GG~~s~~~~~pv~ti~SGPa~Gv~Ga~~l~~~~~g~~~~I~~DmGGTStDv 326 (1173)
|++++||+.+.+.|.+.. ...+.+||||||+...+.++.++.|+|||||||+|-+..++.......+|.||||||||||
T Consensus 241 p~i~~YL~~f~sgf~~~~-~~~v~FMqSDGGL~d~~~Fsg~~aIlSGPAgGvVG~a~T~~~~~~~~P~IGFDMGGTSTDV 319 (1247)
T KOG1939|consen 241 PVIKEYLDGFKSGFSDIL-STRVQFMQSDGGLVDMDKFSGLRAILSGPAGGVVGYASTSYDAEDKKPLIGFDMGGTSTDV 319 (1247)
T ss_pred HHHHHHHHHHhhcccccc-CcceEEEecCCCccccccccchhhhhcCCCcceeeeeeeccccccCCceeeecCCCCccce
Confidence 999999999999998855 4589999999999999999999999999999999999887665667889999999999999
Q ss_pred eeeeceeeeeeeeEEccEEEeecceeeEEEeccCCcEEEEeCCeEEECccccCCCCCcceeccCCccccchHHHHccccC
Q 001049 327 SRYAGSYEQVLETQIAGAIIQAPQLDINTVAAGGGSNLMFQLGAFRVGPESVGAHPGPVCYRKGGDLAVTDANLILGFVI 406 (1173)
Q Consensus 327 ~li~G~~~~~~~~~i~g~~~~~p~~di~sIGaGGGSia~v~~G~l~VGP~SAGa~PGPacYg~GG~pTvTDA~lvLG~l~ 406 (1173)
|...|..+...++.+.|..++.|.+||+||+|||||...+..|.++|||+||||+||||||.+||++|||||||+|||+-
T Consensus 320 sRY~G~~EhV~Et~taGi~IQaPQLDI~TVAAGGgSrLf~r~glf~VGPeSagahPGPacYrkGGpLtvTDANl~LGrii 399 (1247)
T KOG1939|consen 320 SRYDGSYEHVIETTTAGITIQAPQLDINTVAAGGGSRLFFRNGLFRVGPESAGAHPGPACYRKGGPLTVTDANLLLGRII 399 (1247)
T ss_pred eccCCceeeEEEeecceEEEecCcccceeeecCCceeEEEecCcEEECcccccCCCCchhhccCCcceeehhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHHhhccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 001049 407 PDYFPSIFGPNEDQPLDINATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRN 486 (1173)
Q Consensus 407 p~~fl~~~g~gG~~~Ld~~~a~~a~~~ia~~lg~~~~~~~~~~~gl~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprd 486 (1173)
|++|++||||+.+.+||.|.++..|++|.+.++..|++ .|++||+|.|++++||+.|++.||.++..||+|+..
T Consensus 400 P~~FPkIFGPnEdesld~e~tr~kF~eL~~~IN~~l~s------~~t~eevA~GFi~VANEtMcRPIR~lTesrG~d~s~ 473 (1247)
T KOG1939|consen 400 PDFFPKIFGPNEDESLDVEITREKFEELTDEINIDLKS------ELTVEEVALGFIKVANETMCRPIRALTESRGHDTSN 473 (1247)
T ss_pred hhhcccccCCCcccccchHHHHHHHHHHHHHHhhhccc------cccHHHHHHHHHHhhhhhhcchHHHHHhhcCCcccc
Confidence 99999999999999999999999999999999865554 399999999999999999999999999999999999
Q ss_pred ceEEEEcCchhhhHHHHHHHcCCCEEEECCCCCccchhcccccceeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHH
Q 001049 487 HALACFGGAGPQHACAIARSLGMREVLIHRFCGILSAYGMGLADVVEEAQEPYSAVYGPESVLEVSRREGILSKQVKQKL 566 (1173)
Q Consensus 487 f~LvafGGaGplha~~lA~~lGi~~VivP~~~~v~sA~G~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~l 566 (1173)
+.|.||||||++|||++|+.|||.+|+|++|++++|||||++||+.++...++...+++.....+...|+.|.+++.+.|
T Consensus 474 H~LacFGGAGgQHacaiA~~LGI~kVlIHkYssiLSAYGmaLAdVv~e~QeP~~~v~~e~~~~~vk~r~~~l~k~~~~~L 553 (1247)
T KOG1939|consen 474 HALACFGGAGGQHACAIAKSLGILKVLIHKYSSILSAYGMALADVVEESQEPCSFVLGEESLSLVKRRFDVLSKEAPKKL 553 (1247)
T ss_pred eeeEeecCCCcchhHHHHhhcchhhhhHHHHHHHHhhhhhhhhhhhhhhcCccceeecccchhhhhhhhhhhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999888887777778888999999999999
Q ss_pred HHcCCCCCCEEEEEEEeeeecCeeEEEEEecccccCCCcccHHHHHHHHHHHHhccccCCCcEEEEEEEEEEEEecCCCC
Q 001049 567 QEQGFREESITTETYLNLRYEGTDTAIMVKKRIAEDGSGCGYAVDFEKLFQQEYGFKLQNRNILVCDVRVRGIGVTNILK 646 (1173)
Q Consensus 567 ~~~G~~~~~~~~~~~~d~RY~GQ~~~l~v~~~~~~~~~~~~~~~~F~~~h~~~yg~~~~~~~vei~~~rv~~~~~~~~~~ 646 (1173)
+++|+...+++++.++.|||.|....|+|..+.+. ..++.+.|.+.|+++|||...++.|.|..+|+|++|+...+.
T Consensus 554 ~eqgf~~sqIs~E~flnlRYegtdtalMi~~~~~~---~~df~~~F~e~~k~efGF~l~dr~IiidDiRIRaigks~tv~ 630 (1247)
T KOG1939|consen 554 EEQGFLESQISTELFLNLRYEGTDTALMISKKKGK---QWDFRAEFLETYKQEFGFVLEDRNIIIDDIRIRAIGKSGTVQ 630 (1247)
T ss_pred HhhccchhheeeeeeeeeeecCCceeEEEecCCCC---CccHHHHHHHHHHhhcCeEeecCceEEEeeEEEeecccCccc
Confidence 99999999999999999999999999999766432 368999999999999999999999999999999999887553
Q ss_pred CCCCCCC---CCCCCccceEEEEe-CcEEEeeEEecCCCCCCCeeecceEEEeCCeEEEECCCcEEEEecCCcEEEEEec
Q 001049 647 PQAIEPT---SGTPKVEGHYKVFF-NGWHDAPLYKLENLGYGHVMPGPAIIMNGNSTVIVEPNCKAVITKYGNIKIEIES 722 (1173)
Q Consensus 647 ~~~~~~~---~~~~~~~~~r~v~~-~~~~~~pVy~r~~L~~g~~i~GPAiIe~~~tT~vv~pg~~~~vd~~g~l~i~~~~ 722 (1173)
..+.... ..++....+.++|| ++|+++|||..+.|++|+.|.|||||.+.++|++|+|..++++..+|+++.....
T Consensus 631 ~~e~~~~~~~~~~~~~~~~~~~yfe~g~~~~~vy~l~nL~~g~iI~GPA~lid~~sTivieP~~~a~I~~~~~~i~~~~~ 710 (1247)
T KOG1939|consen 631 EKEIKAAAEAQVSAVAKSVSKVYFENGKVDTPVYLLENLPAGHIINGPALLIDKTSTIVIEPSSTATITEHGDVIKDVKT 710 (1247)
T ss_pred hhhhhhhccccCCccccceeeEEEecCccccceEeeccCccCceecCCEEEEcCCceEEEcCcceeEEeecceEEEeccc
Confidence 3222211 11223445678999 8999999999999999999999999999999999999999999999998766543
Q ss_pred ccccc---ccccccCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccceecCCCCCeecccCCCceeeccchH
Q 001049 723 ISSTI---NIAENIADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVANAPHVPVHLGAMSS 799 (1173)
Q Consensus 723 ~~~~~---~~~~~~~DPIt~eVi~~~L~siaeEM~~~l~RtA~Spii~e~~Dfs~aI~d~~G~lva~~~~ip~h~gsm~~ 799 (1173)
..-+. ......+|||+++|+.|||++|+|||+++|+|||.|++|||+.|||||||+++|.|||+++|+|+|+|+|+.
T Consensus 711 ~~~~~~~~~~~~~~~Dpi~lsIFs~RFMsIAeQMGr~LqrTsiStNiKERLDfSCALF~pdGgLVANAPHvPvhLGsMqt 790 (1247)
T KOG1939|consen 711 ARKTMSSVDKIARDLDPIRLSIFSHRFMSIAEQMGRVLQRTSISTNIKERLDFSCALFSPDGGLVANAPHVPVHLGSMQT 790 (1247)
T ss_pred cccccchhhhhhccCCcEEEehhhhHHHHHHHHHHHHHhhhhcccchhhhccceeEeEcCCCCeeccCCCCceeecchHH
Confidence 22221 223567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEecCCCCCCCCCCCeEEEEeeeeCC-eEEEEEeccccccccCCCCCCCCCCCCcchhccCc
Q 001049 800 TVRWQLKYWRHNLNEGDVLVSNHPCAGGSHLPDITVITPVFDNG-KLVFFVASRGHHAEIGGITPGSMPPFSKSIWEEGA 878 (1173)
Q Consensus 800 ~v~~~l~~~~~~l~pGDv~i~NDPy~Gg~Hl~Dv~v~~PVF~~G-elv~~~a~~~H~~DiGG~~pGs~~~~atdi~qEGl 878 (1173)
+|++.+++|+++|+||||+++|+|-.||+||||+|+++|||+++ ++|||+|+|+||+||||.+||||+|.+++|||||-
T Consensus 791 ~V~~Q~k~~~~kLk~GDVlltNHP~aGG~HLPDiTvITPvF~~~~~~vF~vAsRgHhaDiGGI~PGSmPp~Sk~i~eEGa 870 (1247)
T KOG1939|consen 791 TVKWQLKHWGEKLKPGDVLLTNHPSAGGSHLPDITVITPVFDKGHEPVFFVASRGHHADIGGITPGSMPPNSKAIYEEGA 870 (1247)
T ss_pred HHHHHHHHhccCCCCCcEEEecCCCCCCccCCCceEEeeeecCCCcEEEEEecccccccccCcCCCCCCCcchhhhhccc
Confidence 99999999999999999999999999999999999999999976 99999999999999999999999999999999999
Q ss_pred ccccEEEEECCeeCHHHHHHHHcCCCCCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q 001049 879 AIKAFKLVEKGIFQEEGITKLLLDPSSEDSAHKIPGTRRLQDNLSDLRAQVAANQRGISLIKELIEQYGLKTVQAYMTYV 958 (1173)
Q Consensus 879 ~iPp~Kl~~~G~~~~d~~~~li~~~~~~~~~p~~~n~R~p~~~~gDl~Aqiaa~~~g~~rl~eLi~ryG~d~v~~~~~~i 958 (1173)
-|-..|++++|+++|+.+.+++.+.+. .+|+|+.+|.-.+++.||+||||||+.|.+-+.+|+++||+++|.++|.++
T Consensus 871 aiksfkvV~~GvFqEe~ii~ll~~~~a--~~~g~sgsR~l~DNisDlkAqiaAn~kGiqlv~~Li~eYgl~~V~~yM~~I 948 (1247)
T KOG1939|consen 871 AIKSFKVVKEGVFQEERIIDLLKAPPA--KYPGCSGSRNLSDNISDLKAQIAANHKGIQLVTSLIEEYGLDVVQAYMKHI 948 (1247)
T ss_pred eeeeeeeeccccchHHHHHHHHhCCCC--CCCCCccccccccchHHHHHHHhhcccchHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999999999999999999998555 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccc-----cCcc-------cc----------------cCCcC-----------------------
Q 001049 959 QLNAEEAVREMLKSVAAK-----VSSE-------SA----------------KDGER----------------------- 987 (1173)
Q Consensus 959 ~~~sE~~~R~~I~~iPd~-----y~~~-------~~----------------~~Gs~----------------------- 987 (1173)
+..+|.++|+.++++-.. .+++ +| |+|+.
T Consensus 949 Q~nAe~aVR~mLk~v~~~~~~~~l~~eD~mDDGs~I~L~v~Id~E~g~aifdFtGT~pevygn~NAP~AvT~SAviYCLR 1028 (1247)
T KOG1939|consen 949 QNNAELAVREMLKKVGRRVLEKTLSAEDFMDDGSPIKLKVTIDPEKGEAIFDFTGTGPEVYGNCNAPEAVTYSAVIYCLR 1028 (1247)
T ss_pred HHhHHHHHHHHHHHHHHHhccCccchhhccCCCCeEEEEEEEcccCCcEEEeecCCCcccccCcCchHHhHHHHHHHHHH
Confidence 999999999999987642 2211 11 45543
Q ss_pred ------------------------------CCccccccchhhhHHHHHHHHHHHHhhccCCCCccceeecccceEE-EEe
Q 001049 988 ------------------------------NFAAVVGGNVLTSQRITDVVLTAFQACACSQGCMNNLTFGDSTFGY-YET 1036 (1173)
Q Consensus 988 ------------------------------~paa~~~~~~~~~~~i~d~v~~Al~~~a~~~g~~~~~~~g~~~f~~-~~~ 1036 (1173)
.-||++++|+.++|||.|+|++||..+|+|+|||||++||.+.|.+ ||+
T Consensus 1029 clv~~dIPLNqGCL~Pi~i~IP~~s~LsPse~AaVVgGNVlTSQRitDvilkaF~~cAaSQGcmNNltfG~~~~~~yYET 1108 (1247)
T KOG1939|consen 1029 CLVNEDIPLNQGCLAPIQIKIPAGSFLSPSETAAVVGGNVLTSQRITDVILKAFQICAASQGCMNNLTFGDEGCGYYYET 1108 (1247)
T ss_pred HHhcCCcCcccccccceEEeeCCCcccCcccccceeccceeehhhhHHHHHHHHHHHhhccccccCeeeccCCcCcceee
Confidence 5689999999999999999999999999999999999998866654 799
Q ss_pred cccccCCCCCCCCCCCccCCCCCCCCCChhhhcccCcEEEEEEeeecCCCCCCcccCcCceEEEEEEeeceEEEEecCCc
Q 001049 1037 IGGGSGAGPTWDGTSGVQCHMTNTRMTDPEIFEQRYPVFLHKFGLREKSGGAGLHRGGDGLVREIEFRRPVVVSILSERR 1116 (1173)
Q Consensus 1037 ~~GG~GA~~~~DG~~~~~~~~~~~~~~~vE~~E~~~Pv~v~~~~l~~DSGGaG~~RGG~G~~~~~~~l~~~~~~~~~dr~ 1116 (1173)
++||.||.++|+|.+|+++||+|+|+++.|++|.+|||+.++|.||..|||.|+|-||.|++|++++..++++++.++|+
T Consensus 1109 I~GGaGAg~gwnGtsgVhthMTNTRiTDpEi~E~RyPviLrrf~lRe~SGG~Gk~~GGdGvvRd~eFrk~vt~SiLsERR 1188 (1247)
T KOG1939|consen 1109 IAGGAGAGPGWNGTSGVHTHMTNTRITDPEILERRYPVILRRFCLREGSGGKGKYHGGDGVVRDLEFRKPVTLSILSERR 1188 (1247)
T ss_pred ecccCCCCCCCCCCCceeecccccccCCHHHHhhhhhHhhhhheeccCCCCccceeCCCceEEEEEeecceEEEeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCcCCceEEEcCCCeEEeeCCcceEEcCCCCEEEEecCCCcccCC
Q 001049 1117 VHAPRGLKGGKDGARGANYLITKDKRKVYLGGKNTVQVQPGEILQILTPAGGGWGS 1172 (1173)
Q Consensus 1117 ~~~p~Gl~GG~~G~~~~~~~~~~~g~~~~~~~~~~~~l~~Gd~l~~~t~GGGG~Gd 1172 (1173)
.+.|+|+.||++|..|.+.+++.++....++.|.++.+++||++.|+||||||||.
T Consensus 1189 ~~~PyGl~GGqdg~~G~Nl~i~~~~~~inlggKnt~~~q~GD~~~i~TPGGGGyG~ 1244 (1247)
T KOG1939|consen 1189 AFQPYGLNGGQDGQRGLNLWIRRDGRAINLGGKNTVHVQAGDILVIETPGGGGYGA 1244 (1247)
T ss_pred ccCCcccCCCCCcccccceEEEcCCceEEecCcceEEecCCCEEEEECCCCCCCCC
Confidence 99999999999999999999998999999999999999999999999999999996
No 3
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.7e-143 Score=1304.87 Aligned_cols=662 Identities=35% Similarity=0.530 Sum_probs=605.3
Q ss_pred CceEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEEehhHh
Q 001049 7 EKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRMGTTVA 86 (1173)
Q Consensus 7 ~~~rigIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~~~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~v~~i~hGTT~a 86 (1173)
++|+||||+||||||+|++|+++..+.+.|++|| |.++...+.++++.++... ..++|+.++||||++
T Consensus 1 ~~~~iGID~GGTfTDaV~~~~~~g~~~~~K~lTt-P~~~~~~~~~~~~~~~~~~-----------~~~~i~~v~~gTT~a 68 (674)
T COG0145 1 MMLRIGIDVGGTFTDAVLLDEDGGVLATIKVLTT-PDLPSGIVNAGIRLALELL-----------EGSEVDLVVHGTTLA 68 (674)
T ss_pred CceEEEEEcCCCcEeEEEEeCCCCEEEEEEccCC-CCchhhHHHHHHHHHhhcc-----------ccccccEEEEeccHH
Confidence 4699999999999999999865423899999997 9998888888877766532 115799999999999
Q ss_pred hhHhhhcCCCcEEEEEccCchhhhhhccCCCCCCccccccCCCCccee--EEEeeEeeecccccccccccceeecccCce
Q 001049 87 TNALLERKGERIALCVTRGFKDLLQIGNQARPQIFDLTVSTPSNLYEE--VIEVDERVELVLENEKENQESLVKGVSGEL 164 (1173)
Q Consensus 87 tNAllerkg~rvglitt~GfrD~l~igr~~rp~~~~~~~~~P~~l~~~--~~~v~eRi~~~g~~~~~~~~~~v~G~~g~~ 164 (1173)
|||||||||.|+|||||+||+|+|+||||+||++|++.+.||.+|+++ ++|+.||++.+|
T Consensus 69 TNallerkG~~~alittkGf~dli~IG~~~rp~~~~~~~~~P~~l~~r~~~~g~~er~~~eG------------------ 130 (674)
T COG0145 69 TNALLERKGLRTALITTKGFVDLIEIGRQNRPRLYPLYIKKPKPLVPRVRVFGGHERVGAEG------------------ 130 (674)
T ss_pred HHHHHhccCcceeeeeccccceEEEEcCccccccccccccCccccccceeeccccceeCCCc------------------
Confidence 999999999999999999999999999999999999999999999998 779999998865
Q ss_pred eEEecCCCHHHHHHHHHHHHHCCCcEEEEEccCcCCCchhHHHHHHHHHhc-CCceeeeeccccCcCCcccchhHHHHHh
Q 001049 165 VRVVKPVNEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGL-GFRHVSLSSALTPMVRAVPRGLTASVDA 243 (1173)
Q Consensus 165 g~v~~plde~~v~~~~~~l~~~gv~avAV~~l~S~~np~hE~rv~ei~~~~-~~~~Vs~S~ei~p~~~e~eR~~TtvlNA 243 (1173)
+|++|||+++|++++++|+++|+++||||++|||+||+||++++||+++. ...+|+|||||+|+++||||++||+|||
T Consensus 131 -~v~~~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~~~i~V~~shev~p~~~~~eR~~TavlnA 209 (674)
T COG0145 131 -EVIKPLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIGPDIPVSLSHEVSPEIGEYERANTAVLNA 209 (674)
T ss_pred -cccCcCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhcCCceEEechhcchhcCcccchhhheeee
Confidence 99999999999999999999999999999999999999999999999998 3558999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccccc--ccceecccchhhHHHHHHhcccccCCCCEEEEecCC
Q 001049 244 YLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFS--GHKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGG 321 (1173)
Q Consensus 244 yl~p~~~~yl~~l~~~L~~~~~~~~l~im~s~GG~~s~~~~~--pv~ti~SGPa~Gv~Ga~~l~~~~~g~~~~I~~DmGG 321 (1173)
||.|++++||+++++.|++.++++++++||||||++++++++ |++||+||||||++||++++....| ++|+|||||
T Consensus 210 ~L~pi~~~yl~~v~~~l~~~g~~~~l~~m~sdGgl~~~~~a~~~pv~tI~SGPAagvvGAa~ltg~~~g--~~i~~DmGG 287 (674)
T COG0145 210 YLSPILRRYLEAVKDALKERGIKARLMVMQSDGGLVSAEEAREKPVETILSGPAAGVVGAAYLTGLKAG--NAIVFDMGG 287 (674)
T ss_pred eehHHHHHHHHHHHHHHHhcCCCceeEEEecCCccccHHHHhcCCeeeEeeccHHHHHHHHHhcccccC--CEEEEEcCC
Confidence 999999999999999999988899999999999999999985 9999999999999999999423344 699999999
Q ss_pred CceEEeeee-ceeeeeeeeEEcc-EEEeecceeeEEEeccCCcEEEEe-CCeEEECccccCCCCCcceeccCC-ccccch
Q 001049 322 TSTDVSRYA-GSYEQVLETQIAG-AIIQAPQLDINTVAAGGGSNLMFQ-LGAFRVGPESVGAHPGPVCYRKGG-DLAVTD 397 (1173)
Q Consensus 322 TStDv~li~-G~~~~~~~~~i~g-~~~~~p~~di~sIGaGGGSia~v~-~G~l~VGP~SAGa~PGPacYg~GG-~pTvTD 397 (1173)
||||+|+|. |+|+.+.++++.| ||+++||+||+|||+|||||+|+| +|.+||||+||||+|||+||++|| +||+||
T Consensus 288 TStDva~i~~G~pe~~~e~~v~Gg~~t~vp~i~i~tvaaGGgSiv~~d~~g~~rVgP~saga~pgp~cy~~gg~~~titD 367 (674)
T COG0145 288 TSTDVALIIDGEPEISSETEVAGGYPTRVPMVDIRTVAAGGGSIVWVDEGGPLRVGPLSAGADPGPACYGRGGTEPTITD 367 (674)
T ss_pred cceeeeeeecCcEEeeccceEEcceeeEEeeeeEEEEcCCCceEEEEcCCCcceeccccccCCCCCchhhcCCCCCcccc
Confidence 999999996 9999999998875 999999999999999999999998 799999999999999999999999 799999
Q ss_pred HHHHccccCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHHhhccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001049 398 ANLILGFVIPDYFPSIFGPNEDQPLDINATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGFVNVANETMCRPIRQLT 477 (1173)
Q Consensus 398 A~lvLG~l~p~~fl~~~g~gG~~~Ld~~~a~~a~~~ia~~lg~~~~~~~~~~~gl~~eeaA~gi~~ia~~~Ma~air~~~ 477 (1173)
||++||||+|..++ ||+++||++.++++|+++++.++ +.+++|+|.+++++++.+|+++||.++
T Consensus 368 an~~lGrl~p~~~~-----G~~~~ld~~~~~~~~~~~~~~i~-----------~~~~ee~a~~~i~ia~~~m~~air~~~ 431 (674)
T COG0145 368 ANLVLGRLQPPVLL-----GGDLKLDVELAREAFSELEADIG-----------GLIGEEVASGFIRLANLEMAGAIRKVT 431 (674)
T ss_pred hhhhccccCchhhc-----CCcccccHHHHHHHHHHHHHHhc-----------cCCccchHHHHHHHHHHhhhhhhhhhh
Confidence 99999999997665 57899999999999999988886 358999999999999999999999999
Q ss_pred HHhCCCCCCceEEEEcCchhhhHHHHHHHcCCCEEEECCCCCccchhcccccceeEEEEEEEeeccCCCCHHHHHHHHHH
Q 001049 478 EMKGHETRNHALACFGGAGPQHACAIARSLGMREVLIHRFCGILSAYGMGLADVVEEAQEPYSAVYGPESVLEVSRREGI 557 (1173)
Q Consensus 478 ~~rG~dprdf~LvafGGaGplha~~lA~~lGi~~VivP~~~~v~sA~G~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1173)
++||||||+|+|++|||+||+|||.+|++||+++|++|+++++||||||++||+++++.+++...+++.+.+.+...|+.
T Consensus 432 ~~rg~d~~~~~l~~fggag~~Ha~~~a~~lg~~~v~i~~~~~~~sA~G~~lad~~~~~~~~v~~~l~~~~~~li~~~~~~ 511 (674)
T COG0145 432 VERGYDPRDFTLIGFGGAGPLHALGVAEELGIKRVIIPPYPGVFSAYGMLLADLRSELSKSVKQKLAEAALELIAFVFEM 511 (674)
T ss_pred hhcccCccceEEEecCCchHHHHHHHHHhcCCcceeeccchhhhhhccchhhhhHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988887777888999999
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEEEeeeecCeeEEEEEecccccCCCcccHHHHHHHHHHHHhccccCCCcEEEEEEEEE
Q 001049 558 LSKQVKQKLQEQGFREESITTETYLNLRYEGTDTAIMVKKRIAEDGSGCGYAVDFEKLFQQEYGFKLQNRNILVCDVRVR 637 (1173)
Q Consensus 558 l~~~a~~~l~~~G~~~~~~~~~~~~d~RY~GQ~~~l~v~~~~~~~~~~~~~~~~F~~~h~~~yg~~~~~~~vei~~~rv~ 637 (1173)
|++++.++|..+|+.++++.+...++|||.||.+...++.+... + .++.++||+.|++.|||..++.+++++++++.
T Consensus 512 l~~~~i~~l~~~~~~~~~~~~~~~~~vry~G~~~~~~~~~~~~~--~-~~~~~~f~~~h~~~~g~a~~~~~~~v~~~~~~ 588 (674)
T COG0145 512 LEEEAIEELLASGFSEEDIRVVRVAPVRYVGGGQDAELEVLKSD--S-EEIRAEFEEPHEARYGNAVGARPGEVVAIRVE 588 (674)
T ss_pred HHHHHHHHHHhcCCcccceeeEeeccEEEEcCccceEEeccccc--h-hhHHhHhhhhhhhhhcccccCceEEEEEEEEE
Confidence 99999999999999999999999999999996665555544321 1 56999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCC-ccceEEEEe-CcEEEeeEEecCCCCCCCeeecceEEEeCCeEEEECCCcEEEEecCCc
Q 001049 638 GIGVTNILKPQAIEPTSGTPK-VEGHYKVFF-NGWHDAPLYKLENLGYGHVMPGPAIIMNGNSTVIVEPNCKAVITKYGN 715 (1173)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~-~~~~r~v~~-~~~~~~pVy~r~~L~~g~~i~GPAiIe~~~tT~vv~pg~~~~vd~~g~ 715 (1173)
+++...+|..+.........+ ....|++|+ +.|++++||++++|++|+.++||||||++++|++|+|||++++|.+++
T Consensus 589 ~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~e~~v~~~~~l~~g~~~~gpaiie~~~~t~vv~pg~~~~v~~~~~ 668 (674)
T COG0145 589 AIGPRDKPVLSPLEEIERVFAPFLGYREAYFAGLWAETPVYEREKLAGGDEVEGPAIIEEEDSTIVVPPGWAARVDVKGV 668 (674)
T ss_pred EEecccccccccccccccccccchhhHHHHhccchhcchHHHHhhcCCCCccceeEEEEecCcccccCCCceEEEEEEEE
Confidence 999877665433222111112 467788888 679999999999999999999999999999999999999999999999
Q ss_pred EEEEE
Q 001049 716 IKIEI 720 (1173)
Q Consensus 716 l~i~~ 720 (1173)
+++++
T Consensus 669 ~v~~~ 673 (674)
T COG0145 669 LVLER 673 (674)
T ss_pred EEEec
Confidence 99875
No 4
>COG0146 HyuB N-methylhydantoinase B/acetone carboxylase, alpha subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.1e-113 Score=996.82 Aligned_cols=428 Identities=53% Similarity=0.866 Sum_probs=410.6
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccceecCCCCCeecccCCCceeeccchHHHHHHHHHhcC--
Q 001049 733 IADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVANAPHVPVHLGAMSSTVRWQLKYWRH-- 810 (1173)
Q Consensus 733 ~~DPIt~eVi~~~L~siaeEM~~~l~RtA~Spii~e~~Dfs~aI~d~~G~lva~~~~ip~h~gsm~~~v~~~l~~~~~-- 810 (1173)
.+|||++|||+|+|++|||||+.+|+|||+||+|||.+||||||||++|++|||++|||+|+|||..+||++++++.+
T Consensus 1 ~~Dpi~lEv~~n~~~~iaeeMg~~l~rtA~SpnIkErlD~scAI~d~~G~lVA~a~hipVHlGsM~~~vk~~i~~~~~~~ 80 (563)
T COG0146 1 EMDPITLEVFNNAFMAIAEEMGVTLQRTAFSPNIKERLDFSCAIFDAEGNLVAQAPHIPVHLGSMSVSVKAMIRNNKENP 80 (563)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecceeEEEECCCCCeeccCCCCeEEecccHHHHHHHHHhhccCC
Confidence 369999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCcEEEecCCCCCCCCCCCeEEEEeeeeCCeEEEEEeccccccccCCCCCCCCCCCCcchhccCcccccEEEEECCe
Q 001049 811 NLNEGDVLVSNHPCAGGSHLPDITVITPVFDNGKLVFFVASRGHHAEIGGITPGSMPPFSKSIWEEGAAIKAFKLVEKGI 890 (1173)
Q Consensus 811 ~l~pGDv~i~NDPy~Gg~Hl~Dv~v~~PVF~~Gelv~~~a~~~H~~DiGG~~pGs~~~~atdi~qEGl~iPp~Kl~~~G~ 890 (1173)
+|+|||||++||||.||||||||++++|||++++|+||+++++||+||||.+||||++.|++|||||++|||+||+++|+
T Consensus 81 ~l~pGDV~~~NdPy~GgTHLpDvt~~~PvF~~~~li~~va~r~H~~DiGG~~PGS~~~~a~ei~~EGl~i~p~Kl~~~G~ 160 (563)
T COG0146 81 DLEPGDVFITNDPYIGGTHLPDVTLVTPVFHDGKLIGYVANRGHHADIGGITPGSMSPGATEIFQEGLRIPPVKLVKNGE 160 (563)
T ss_pred CCCCCCEEEecCcccCCccCCceeEEeeeEeCCeEEEEEEeccceeccCCCCCCCCCccceeeecCceeecceeeeeCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHHHcCCCCCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Q 001049 891 FQEEGITKLLLDPSSEDSAHKIPGTRRLQDNLSDLRAQVAANQRGISLIKELIEQYGLKTVQAYMTYVQLNAEEAVREML 970 (1173)
Q Consensus 891 ~~~d~~~~li~~~~~~~~~p~~~n~R~p~~~~gDl~Aqiaa~~~g~~rl~eLi~ryG~d~v~~~~~~i~~~sE~~~R~~I 970 (1173)
+|+| ++.++++ |+|+|+++++||+||||||+.|++||.+|++|||.|+|.++|+++|+++|+.+|+.|
T Consensus 161 ~~ed-~l~~~~~-----------N~r~P~~~igDlkAqIAA~~~g~~~v~~li~~yG~~~v~~~m~~~~~~ae~~~r~~I 228 (563)
T COG0146 161 FRED-ILRILLR-----------NVRTPDYNIGDLKAQIAANLKGRRRVRELIDEYGLDTVEEAMKEVIEYAERAVRAVI 228 (563)
T ss_pred eCHH-HHHHHHh-----------cCCCcchhchhHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 5678876 799999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhccc-cCcc----------cc----------------cCCcC------------------------------------
Q 001049 971 KSVAAK-VSSE----------SA----------------KDGER------------------------------------ 987 (1173)
Q Consensus 971 ~~iPd~-y~~~----------~~----------------~~Gs~------------------------------------ 987 (1173)
++||++ |+.+ ++ |+||+
T Consensus 229 ~~l~~g~~~~~dy~d~g~~~~~i~v~v~i~~~g~~~~vDFtGTspq~~~~~Nap~~vt~sav~~~~r~~v~~diP~N~G~ 308 (563)
T COG0146 229 RKLPDGKYEFEDYLDDGDTLQPIPVKVTITVEGREAIVDFTGTSPQVYGPFNAPLAVTLSAVLYALRSLLDPDIPLNAGC 308 (563)
T ss_pred HhCCCCceeEEEEEcCCCccceEEEEEEEEecCCEEEEEecCCCcccCCCcCCcchhhhhhHHHHHHHHhCCCCCcCccc
Confidence 999983 4321 11 66765
Q ss_pred -----------------CCccccccchhhhHHHHHHHHHHHHhh------ccCCCCccceeecc-----cceEEEEeccc
Q 001049 988 -----------------NFAAVVGGNVLTSQRITDVVLTAFQAC------ACSQGCMNNLTFGD-----STFGYYETIGG 1039 (1173)
Q Consensus 988 -----------------~paa~~~~~~~~~~~i~d~v~~Al~~~------a~~~g~~~~~~~g~-----~~f~~~~~~~G 1039 (1173)
+|||++++|++++|++.|++|+||+.+ |+++|++|+++||. +.|.|||+++|
T Consensus 309 ~~pi~i~~P~Gt~lnP~~PA~V~~gnvetSqri~d~i~~Al~~~~p~~v~aas~G~mnn~~~Gg~~~~~~~~~~yEti~g 388 (563)
T COG0146 309 LRPIEIIAPEGTWLNPRYPAAVVGGNVETSQRIADVIFGALAQAAPGRVPAASQGTMNNVTFGGINQKGRGFAYYETIGG 388 (563)
T ss_pred ccceEEEcCCCceeCCCCCccccccceehhHHHHHHHHHHHHHhccccCcccCcCceeEEEecCCCCCCceeEEEecccC
Confidence 899999999999999999999999854 45999999999987 78999999999
Q ss_pred ccCCCCCCCCCCCccCCCCCCCCCChhhhcccCcEEEEEEeeecCCCCCCcccCcCceEEEEEEeeceEEEEecCCcccC
Q 001049 1040 GSGAGPTWDGTSGVQCHMTNTRMTDPEIFEQRYPVFLHKFGLREKSGGAGLHRGGDGLVREIEFRRPVVVSILSERRVHA 1119 (1173)
Q Consensus 1040 G~GA~~~~DG~~~~~~~~~~~~~~~vE~~E~~~Pv~v~~~~l~~DSGGaG~~RGG~G~~~~~~~l~~~~~~~~~dr~~~~ 1119 (1173)
|+||++++||.|+++++|+|++|+|+|++|++|||++++|+||+||||+||||||+|++|++++++++.+++.++|++++
T Consensus 389 G~GA~~~~DG~~~v~~~mtnt~~tpiEi~E~~yPvl~~~~~lr~~SGG~GkyrGG~G~vr~~~~l~~~~~si~s~r~~~~ 468 (563)
T COG0146 389 GSGAGPGKDGLDGVHTHMTNTRNTPIEILERRYPVLLEAFSLREGSGGAGKYRGGDGIVRAFRVLEPATLTILSERRRFP 468 (563)
T ss_pred cCCCCCCCCCCcceeecccccCCCCHHHHhhhCceEEEEEeeccCCCCCcccCCCcceEEEEEeccCceEEEEeCceecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcCCceEEEcCCCeEEeeCCcceEEcCCCCEEEEecCCCcccCC
Q 001049 1120 PRGLKGGKDGARGANYLITKDKRKVYLGGKNTVQVQPGEILQILTPAGGGWGS 1172 (1173)
Q Consensus 1120 p~Gl~GG~~G~~~~~~~~~~~g~~~~~~~~~~~~l~~Gd~l~~~t~GGGG~Gd 1172 (1173)
|||+.||+||.+|..++.+.+++++.++++.+..|++||+|++.|||||||||
T Consensus 469 P~Gl~GG~~g~~g~~~v~~~~g~~~~l~~~~t~~l~~GD~~~i~tpGGGGyG~ 521 (563)
T COG0146 469 PWGLNGGKPGEPGENVVARKDGDVERLGSKDTTELEPGDVVIIETPGGGGYGD 521 (563)
T ss_pred CccccCCccCCCcceEEEeCCCCeEecCceeeeEcCCCCEEEEECCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999998
No 5
>PF02538 Hydantoinase_B: Hydantoinase B/oxoprolinase; InterPro: IPR003692 An appreciable fraction of the sulphur present in mammals occurs in the form of glutathione. The synthesis of glutathione and its utilization take place by the reactions of the gamma-glutamyl cycle, which include those catalysed by gamma-glutamylcysteine and glutathione synthetases, gamma-glutamyl transpeptidase, cysteinylglycinase, gamma-glutamyl cyclotransferease, and 5-oxoprolinase []. This family includes N-methylhydantoinase B which converts hydantoin to N-carbamyl-amino acids, and 5-oxoprolinase 3.5.2.9 from EC which catalyses the formation of L-glutamate from 5-oxo-L-proline. These enzymes are part of the oxoprolinase family and are related to hydantoinase_A.; GO: 0003824 catalytic activity
Probab=100.00 E-value=6.6e-106 Score=967.70 Aligned_cols=427 Identities=42% Similarity=0.701 Sum_probs=403.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccceecCCCCCeecccCCCceeeccchHHHHHHHHHhcCCCC
Q 001049 734 ADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVANAPHVPVHLGAMSSTVRWQLKYWRHNLN 813 (1173)
Q Consensus 734 ~DPIt~eVi~~~L~siaeEM~~~l~RtA~Spii~e~~Dfs~aI~d~~G~lva~~~~ip~h~gsm~~~v~~~l~~~~~~l~ 813 (1173)
+||||+|||||+|.+|++||+.+|+|||+||+|+|++||+|+|||++|++++|+.++|+|+++|+.+||+++++|.++|+
T Consensus 1 vDpit~eii~~~l~~i~~em~~~l~Rta~Spii~e~~D~~~aI~d~~G~~va~~~~ip~h~~~~~~~v~~~~~~~~~~i~ 80 (527)
T PF02538_consen 1 VDPITLEIIRNRLQSIAEEMGAALMRTAFSPIIREAGDFSCAIFDADGRLVAQSEGIPVHVGSMPFAVKAILEYFEDGIR 80 (527)
T ss_pred CCcEeHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcccceeeECCCCCeEEcCCCCcEEEechHHHHHHHHHhccCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred CCcEEEecCCCCCCCCCCCeEEEEeeeeCCeEEEEEeccccccccCCCCCCCCCCCCcchhccCcccccEEEEECCeeCH
Q 001049 814 EGDVLVSNHPCAGGSHLPDITVITPVFDNGKLVFFVASRGHHAEIGGITPGSMPPFSKSIWEEGAAIKAFKLVEKGIFQE 893 (1173)
Q Consensus 814 pGDv~i~NDPy~Gg~Hl~Dv~v~~PVF~~Gelv~~~a~~~H~~DiGG~~pGs~~~~atdi~qEGl~iPp~Kl~~~G~~~~ 893 (1173)
||||||+||||.||+|++|+++++|||||||||+|+++++||+||||++||||+++|||||||||+|||+||+++|++|+
T Consensus 81 ~GDv~i~NDPy~Gg~H~~Dv~~~~PVF~~Gelv~~~~~~~H~~DiGG~~pGs~~~~a~~i~qEGl~iPpvKl~~~G~~~~ 160 (527)
T PF02538_consen 81 PGDVFITNDPYIGGTHLPDVTVVMPVFHDGELVGWAASRAHQSDIGGMVPGSMSPDATDIFQEGLRIPPVKLYERGVLNE 160 (527)
T ss_pred CCCEEEEcCcccCCccCCccEEEEeEEeCCceEEEEeeeeeeeccCCCCCCCCCCCCCChhhCCCeeeeEEEEECCEeCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHcCCCCCCCCCCCCCc---cCcccchhhHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Q 001049 894 EGITK-LLLDPSSEDSAHKIPGT---RRLQDNLSDLRAQVAANQRGISLIKELIEQYGLKTVQAYMTYVQLNAEEAVREM 969 (1173)
Q Consensus 894 d~~~~-li~~~~~~~~~p~~~n~---R~p~~~~gDl~Aqiaa~~~g~~rl~eLi~ryG~d~v~~~~~~i~~~sE~~~R~~ 969 (1173)
| +++ +|++ |+ |+|+++++||+||||||++|++||.|||+|||.|+|+++++++++|+|+++|++
T Consensus 161 d-v~~~~i~~-----------n~~~sR~P~~~~gDl~A~iaa~~~g~~rl~el~~~yG~d~v~~~~~~~~~~sE~~~r~~ 228 (527)
T PF02538_consen 161 D-VLDRIILR-----------NVFNSRVPDQVLGDLRAQIAACRIGARRLLELIERYGADTVRAAMDEILDYSERRMRAA 228 (527)
T ss_pred H-HHHHHHHh-----------CCCCCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 577 7776 45 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcc--c-cCcc---------cc----------------cCCcC----------------------------------
Q 001049 970 LKSVAA--K-VSSE---------SA----------------KDGER---------------------------------- 987 (1173)
Q Consensus 970 I~~iPd--~-y~~~---------~~----------------~~Gs~---------------------------------- 987 (1173)
|++||| + |..+ ++ |+||+
T Consensus 229 I~~lpd~~g~~~~~~~~~~~~~~~i~i~v~vtv~gd~l~~DfsGt~pq~~~~iN~~~~~t~~~~~~~~~~~l~pdip~N~ 308 (527)
T PF02538_consen 229 IAELPDGYGTYEFEDYDDGDDGEPIKIKVTVTVKGDELTVDFSGTSPQVPGPINCPLASTRAAVYYALKCLLDPDIPVNE 308 (527)
T ss_pred HHhcCccCCceEeeeecCCCCCcEEEEEEEEEECCCEEEEEcCCCCcccCCCcccCHHHHHHHHHHHHHHHcCCCCCCcc
Confidence 999999 3 2211 11 55654
Q ss_pred -------------------CCccccccchhhhHHHHHHHHHHHHhhccCCCCccceeecc------cceEEEEecccccC
Q 001049 988 -------------------NFAAVVGGNVLTSQRITDVVLTAFQACACSQGCMNNLTFGD------STFGYYETIGGGSG 1042 (1173)
Q Consensus 988 -------------------~paa~~~~~~~~~~~i~d~v~~Al~~~a~~~g~~~~~~~g~------~~f~~~~~~~GG~G 1042 (1173)
+|||++++++.++++++|++++||++.+++.|++++++++. ++|++++++.||+|
T Consensus 309 G~~rpi~v~~PeGti~np~~PApv~~~~~~~~~~v~~av~~al~~~a~~~G~~~~~~~~~~~~~~G~~~~~~~~~~gG~G 388 (527)
T PF02538_consen 309 GAFRPIEVIAPEGTIVNPRFPAPVSGGTVETSQRVADAVFGALAVPAASAGCANNFVFGGGGPRDGEPFMYFETIGGGWG 388 (527)
T ss_pred ccccceEEEcCCCCEECCCCCCceeccchHHHHHHHHHHHHhhcccccccCCcceEEEecCCCcceeeEEEEEecccccC
Confidence 78887777888899999999999999899999999888743 57899999999999
Q ss_pred CCCCCCCCCCccCCCCCCCCCChhhhcccCcEEEEEEeeecCCCCCCcccCcCceEEEEEEeeceEEEEecCCcccCCCC
Q 001049 1043 AGPTWDGTSGVQCHMTNTRMTDPEIFEQRYPVFLHKFGLREKSGGAGLHRGGDGLVREIEFRRPVVVSILSERRVHAPRG 1122 (1173)
Q Consensus 1043 A~~~~DG~~~~~~~~~~~~~~~vE~~E~~~Pv~v~~~~l~~DSGGaG~~RGG~G~~~~~~~l~~~~~~~~~dr~~~~p~G 1122 (1173)
|+++.||+|++.+++++++++|+|++|.+||++|++|++++||||+||||||+|++++++++.++.+++++||.+++|||
T Consensus 389 A~~~~DG~~~~~~~~~~~~~~~vE~~E~~~P~~v~~~~l~~DSgGaG~~RGG~G~~~~~~~~~~~~~~~~~~r~~~~p~G 468 (527)
T PF02538_consen 389 ARPGRDGVDAVWFPMGNTRNTPVEVLEAEYPLLVERRELRPDSGGAGRYRGGLGVVREYRVLHDATMTVMGDRSRFPPWG 468 (527)
T ss_pred CCCccCccCeeccCccccCCCCHHHHhhhCCeEEEEEEeccCCCCCCccCCCCeEEEEEEECCCeEEEEEeCCcccCCcc
Confidence 99999999998888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCCceEEEcCCCeEEeeCCcceEEcCCCCEEEEecCCCcccCC
Q 001049 1123 LKGGKDGARGANYLITKDKRKVYLGGKNTVQVQPGEILQILTPAGGGWGS 1172 (1173)
Q Consensus 1123 l~GG~~G~~~~~~~~~~~g~~~~~~~~~~~~l~~Gd~l~~~t~GGGG~Gd 1172 (1173)
++||+||+++.++++++++.++.++.+...++++||+|+++|+||||||+
T Consensus 469 ~~GG~~G~~~~~~~~~~~~~~~~l~~~~~~~l~~Gd~~~~~t~GGGGyGe 518 (527)
T PF02538_consen 469 LFGGYPGAPGRAWVVRGDGEEEPLPAKGMVPLKPGDVVRIETPGGGGYGE 518 (527)
T ss_pred cccCcCCCCcceEEEeCCCCeEEcCCcceEEeCCCCEEEEECcCcCcCCc
Confidence 99999999999999999988888888888899999999999999999993
No 6
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=100.00 E-value=5.2e-69 Score=605.10 Aligned_cols=284 Identities=40% Similarity=0.647 Sum_probs=172.5
Q ss_pred chhHHHHHhcchHHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccccc--ccceecccchhhHHHHHHhcccccCCC
Q 001049 235 RGLTASVDAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFS--GHKAVLSGPAGGVVGYSQTLFGLETEK 312 (1173)
Q Consensus 235 R~~TtvlNAyl~p~~~~yl~~l~~~L~~~~~~~~l~im~s~GG~~s~~~~~--pv~ti~SGPa~Gv~Ga~~l~~~~~g~~ 312 (1173)
|++||+|||||+|+|++|++++++.|++.++++|++|||||||+|++++++ |++|++||||||++|+++. ..+.+
T Consensus 1 R~~ta~lnA~l~p~~~~~~~~l~~~l~~~g~~~~~~i~~~dGgl~~~~~a~~~Pv~ti~SGPaas~~ga~~~---~~g~~ 77 (290)
T PF01968_consen 1 RTNTAVLNAYLKPVMRRYLEGLEDALRERGIAAPLFIMKSDGGLMSAEEARRRPVETILSGPAASVIGAAAR---LTGLE 77 (290)
T ss_dssp ---EEEES---S--SS-CCHTHHHHHHHHHHHT-EEEE-TTSSEEEHHHHHHSGGCTB--SSHHHHHHHHH-----HT-S
T ss_pred CccEEeEhhehHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCcCcHHHHHHhHHHHhhcCHHHhHhhhhhh---cCCCC
Confidence 899999999999999999999999999977789999999999999999974 9999999999999999991 24788
Q ss_pred CEEEEecCCCceEEeeee-ceeeeeeeeEE-ccEEEeecceeeEEEeccCCcEEEEe-CCeEEECccccCCCCCcceecc
Q 001049 313 PLIGFDMGGTSTDVSRYA-GSYEQVLETQI-AGAIIQAPQLDINTVAAGGGSNLMFQ-LGAFRVGPESVGAHPGPVCYRK 389 (1173)
Q Consensus 313 ~~I~~DmGGTStDv~li~-G~~~~~~~~~i-~g~~~~~p~~di~sIGaGGGSia~v~-~G~l~VGP~SAGa~PGPacYg~ 389 (1173)
|+|++|||||||||++|. |+|.++.+..+ +++++++|++||+|||+|||||+|.+ +|.++|||+|+|+.|||+||++
T Consensus 78 ~~i~vDmGGTTtDi~~i~~G~p~~~~~~~~i~g~~t~~~~~~v~sig~GGgS~~~~~~~g~~~vgp~sag~~pg~~~~~~ 157 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIKDGRPEISSEGAIIGGYPTDVPMLDVRSIGAGGGSIVWVDEGGRLRVGPESAGAAPGPACYGF 157 (290)
T ss_dssp SEEEEEE-SS-EEEEEEETTEE----------S-SSHHHHHTTTSEE---SSS-GGGG-SEEEETTEEEE---SS-----
T ss_pred CEEEEeCCCCEEEEEEEECCeeeccccccccCCceeeccchhheeeeeecceEEEEeCCCceEEecccCCcCCCcccccc
Confidence 999999999999999996 99998888877 99999999999999999999999775 7999999999999999999999
Q ss_pred CC-ccccchHHHHccccCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHHhhccccCCCCCCCCCHHHHHHHHHHHHHHH
Q 001049 390 GG-DLAVTDANLILGFVIPDYFPSIFGPNEDQPLDINATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGFVNVANET 468 (1173)
Q Consensus 390 GG-~pTvTDA~lvLG~l~p~~fl~~~g~gG~~~Ld~~~a~~a~~~ia~~lg~~~~~~~~~~~gl~~eeaA~gi~~ia~~~ 468 (1173)
|| .||+|||+++||+++|++|+. +++|+++||.++|+++++++|++++ ++++|+|++++++++++
T Consensus 158 Gg~~~T~TDa~~vlG~l~~~~~~~--t~~G~~~l~~~~a~~a~~~la~~lg------------~~~~~~A~~i~~~~~~~ 223 (290)
T PF01968_consen 158 GGTFPTVTDANLVLGRLDPDDFLC--TPGGRMKLDREAARRALERLADPLG------------LSVEEAAEGIVRIANEN 223 (290)
T ss_dssp -----BHHHHHHHTTSS-GGG--S---TTS---SHHHHHHHHHHTTT--TT------------TSHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHhccCCcccccC--CCCCCcCCCHHHHHHHHHHHHHHHC------------cCHHHHHHHHHHHHHHH
Confidence 99 799999999999999999983 6679999999999999988999986 89999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEEcCchhhhHHHHHHHcCCCEEEECCCCCccchhcccccceeEEE
Q 001049 469 MCRPIRQLTEMKGHETRNHALACFGGAGPQHACAIARSLGMREVLIHRFCGILSAYGMGLADVVEEA 535 (1173)
Q Consensus 469 Ma~air~~~~~rG~dprdf~LvafGGaGplha~~lA~~lGi~~VivP~~~~v~sA~G~~~ad~~~~~ 535 (1173)
|+++|+++++++|+||++|.|++|||+||+|++.+|++||+++|++|++++|+||+|+++||++++.
T Consensus 224 m~~~i~~~~~~~g~~~~~~~lv~~GG~g~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a~v~~~~ 290 (290)
T PF01968_consen 224 MADAIREVSVERGYDPRDFPLVAFGGAGPLHAPELAEELGIPRVVPPHYAGVANAIGAAVADVRHDV 290 (290)
T ss_dssp HHHHHHHHHHHHT--EEEE------------------------------------------------
T ss_pred HHHHHHHHHHhhCCCccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999873
No 7
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=100.00 E-value=8.6e-44 Score=372.68 Aligned_cols=175 Identities=41% Similarity=0.614 Sum_probs=155.5
Q ss_pred EEEEeccCccccEEEEecC-CceEEEEEeccCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEEehhHhhh
Q 001049 10 RFCIDRGGTFTDVYAEIPG-QLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRMGTTVATN 88 (1173)
Q Consensus 10 rigIDvGGTfTD~v~~~~~-g~~~~~~K~~st~p~~~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~v~~i~hGTT~atN 88 (1173)
||||||||||||+|++|++ +. +.+.|+||| |+|+..++.++|.++++. .++++++|+.|+||||++||
T Consensus 1 RigIDvGGT~TD~v~~d~~~~~-~~~~K~~Tt-~~d~~~gi~~al~~l~~~---------~~~~~~~i~~v~~gTT~~tN 69 (176)
T PF05378_consen 1 RIGIDVGGTFTDAVLLDEDTGV-VATAKVPTT-PDDPAEGILEALDALLEE---------SGIDPSDIDRVRHGTTVATN 69 (176)
T ss_pred CeeEecCCCcEEEEEEeCCCCE-EEEEEeCCC-CcCHHHHHHHHHHhhhcc---------cCCChhhCcEEEeccHHHHH
Confidence 6999999999999999866 55 899999986 888766666665555543 24568899999999999999
Q ss_pred HhhhcCCCcEEEEEccCchhhhhhccCCCCCCccccccCCCCcceeEEEeeEeeecccccccccccceeecccCceeEEe
Q 001049 89 ALLERKGERIALCVTRGFKDLLQIGNQARPQIFDLTVSTPSNLYEEVIEVDERVELVLENEKENQESLVKGVSGELVRVV 168 (1173)
Q Consensus 89 Allerkg~rvglitt~GfrD~l~igr~~rp~~~~~~~~~P~~l~~~~~~v~eRi~~~g~~~~~~~~~~v~G~~g~~g~v~ 168 (1173)
||+||||+|||||+|+||+|.|+++|+++|++|++ ..|..+.+.+++|.||++++| +++
T Consensus 70 Al~e~~g~~v~li~~~G~~d~l~~~~~~~~~~~~~--~~~lv~~~~~~~v~gr~~~~G-------------------~~i 128 (176)
T PF05378_consen 70 ALLERKGARVGLITTGGFGDVLEIGRQWRPDLFDL--QDPLVPRERVFEVDGRIDADG-------------------EVI 128 (176)
T ss_pred HHHhccCCCceEEeccCcHhhcchhhccCCccccc--ccccccccCEEEECCccccCc-------------------EEe
Confidence 99999999999999999999999999999999983 355555667999999999866 999
Q ss_pred cCCCHHHHHHHHHHHHHCCCcEEEEEccCcCCCchhHHHHHHHHHhcC
Q 001049 169 KPVNEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGLG 216 (1173)
Q Consensus 169 ~plde~~v~~~~~~l~~~gv~avAV~~l~S~~np~hE~rv~ei~~~~~ 216 (1173)
.|||+++|++++++|+++|+++||||++|||+||+||+++++|++++|
T Consensus 129 ~~ld~~~v~~~~~~l~~~gv~avAV~~~fS~~np~hE~~v~eii~e~g 176 (176)
T PF05378_consen 129 EPLDEDEVREALRELKDKGVEAVAVSLLFSYRNPEHEQRVAEIIREEG 176 (176)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEEECccCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999864
No 8
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=100.00 E-value=4.4e-38 Score=354.08 Aligned_cols=243 Identities=17% Similarity=0.184 Sum_probs=198.6
Q ss_pred hHHHHHHHHHhcC---CceeeeeccccCcCCcccchhHHHHHhcchHHHHHHHHHHHHHHHhcCCCceEEEEEcCCCccc
Q 001049 204 HEMAVEKLALGLG---FRHVSLSSALTPMVRAVPRGLTASVDAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAP 280 (1173)
Q Consensus 204 hE~rv~ei~~~~~---~~~Vs~S~ei~p~~~e~eR~~TtvlNAyl~p~~~~yl~~l~~~L~~~~~~~~l~im~s~GG~~s 280 (1173)
-+..+++++++++ ..-||.+-|+.-.+ -.| +.=+..+.+.+++.+ .++++|||||||+++
T Consensus 38 L~~~l~~~~~~~~~~~~~avtMTgELaD~f--~~r--------------~~GV~~i~~~~~~~~-~~~~~i~~s~GG~~s 100 (318)
T TIGR03123 38 LAETLKEISQDLSSADNVAVTMTGELADCF--EDK--------------AEGVEFILAAVESAF-GSPVSVFASDGGFVS 100 (318)
T ss_pred HHHHHHHHHHhcCccceEEEEeehhhhhhh--cCH--------------HHHHHHHHHHHHHhc-CCCeEEEecCCCCcc
Confidence 3444555555431 23588888887332 233 222333334444444 568999999999999
Q ss_pred ccccc--ccceecccchhhHHHHHHhcccccCCCCEEEEecCCCceEEeeee-ceeeeeeeeEEcc----E-----EEee
Q 001049 281 ESRFS--GHKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA-GSYEQVLETQIAG----A-----IIQA 348 (1173)
Q Consensus 281 ~~~~~--pv~ti~SGPa~Gv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~-G~~~~~~~~~i~g----~-----~~~~ 348 (1173)
+++++ |+++++|| ++.+|+++++ ..+|+|+||||||||||++|. |+|..+.++++++ + |+++
T Consensus 101 ~~~a~~~pv~~~~Sg---~~a~A~~la~---~~~~~I~~DmGGTTtDi~~i~~G~p~~~~~~d~~rl~~gelvy~g~vrt 174 (318)
T TIGR03123 101 AEEALTNPLDVAAAN---WLATAQLIAK---RIPECLFVDMGSTTTDIIPIIDGEVAAKGKTDLERLKTGELVYTGVLRT 174 (318)
T ss_pred HHHHHHhHHHHHHhh---HHHHHHHHHh---cCCCEEEEEcCccceeeEEecCCEeeeeechhhhhccCCceeeccceee
Confidence 99974 99999986 5666778873 278999999999999999995 9999887888874 4 9999
Q ss_pred cceeeEEEeccCCcEEEEeCCeEEECccccCCCCCcceeccCCccccchHHHHccccCCCCCCCcCCCCCCCCCCHHH-H
Q 001049 349 PQLDINTVAAGGGSNLMFQLGAFRVGPESVGAHPGPVCYRKGGDLAVTDANLILGFVIPDYFPSIFGPNEDQPLDINA-T 427 (1173)
Q Consensus 349 p~~di~sIGaGGGSia~v~~G~l~VGP~SAGa~PGPacYg~GG~pTvTDA~lvLG~l~p~~fl~~~g~gG~~~Ld~~~-a 427 (1173)
|+++|++ ||+| ++|.++||||| .||+||||++||||+|+.|+ ++. +.+.++ +
T Consensus 175 P~~~i~~------SIa~-~gg~l~Vgpe~--------------faT~tDa~lvLG~l~~~~~~-----~~~-~d~~~ks~ 227 (318)
T TIGR03123 175 PISALAR------EVPL-EGEWTRVSSEY--------------FAITADVYRLLGEITEEDYT-----CDT-PDGKGKSI 227 (318)
T ss_pred eHHHHHh------hhcc-CCCccccCcch--------------hhHHHHHHHHhCCCCchhhc-----CCC-cccccccH
Confidence 9999999 9999 88999999996 69999999999999999998 344 666666 6
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCHHH--------HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCchhhh
Q 001049 428 REKFQKLASEINSYRKSQDPSVKDMTVED--------IALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQH 499 (1173)
Q Consensus 428 ~~a~~~ia~~lg~~~~~~~~~~~gl~~ee--------aA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaGplh 499 (1173)
++++++||++|| ++++| +|++|+++++++|+++||++++++|+|| ++|||+||+|
T Consensus 228 ~~a~~rlAr~lg------------~d~~e~~~~~~~~~A~~i~~~~~~~m~~ai~~v~~~~G~Dp-----v~~gGaG~~~ 290 (318)
T TIGR03123 228 EECMRRLARMVC------------ADLEELGEEDVRNLAKYYYEAQLEQLTEAIEEVLERYGLKT-----VVAAGAGEFL 290 (318)
T ss_pred HHHHHHHHHHhC------------CChhHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----eEEecchHHH
Confidence 889989999997 67555 9999999999999999999999999999 9999999999
Q ss_pred HHHHHHHcCCCEEE
Q 001049 500 ACAIARSLGMREVL 513 (1173)
Q Consensus 500 a~~lA~~lGi~~Vi 513 (1173)
++.+|++||++.|-
T Consensus 291 a~~lA~~lg~~~v~ 304 (318)
T TIGR03123 291 AKEAAARLGRECID 304 (318)
T ss_pred HHHHHHHcCCCeec
Confidence 99999999999764
No 9
>PF13941 MutL: MutL protein
Probab=97.74 E-value=0.00082 Score=80.64 Aligned_cols=248 Identities=19% Similarity=0.198 Sum_probs=140.5
Q ss_pred EEEeccCccccEEEEe--c-CCceEEEEEeccCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCC----------Cee
Q 001049 11 FCIDRGGTFTDVYAEI--P-GQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTD----------KIE 77 (1173)
Q Consensus 11 igIDvGGTfTD~v~~~--~-~g~~~~~~K~~st~p~~~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~----------~v~ 77 (1173)
+.+|+|.|||-+.++| . ..+++...+.|||.++ .++..|+.++++++.+.. +.......+ ...
T Consensus 3 L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~---~Dv~~G~~~A~~~l~~~~-~~~~~~~~~~~la~SSAaGGLr 78 (457)
T PF13941_consen 3 LVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEP---GDVTIGLNNALEQLEEQT-PASPDDGYDKVLACSSAAGGLR 78 (457)
T ss_pred EEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCc---ccHHHHHHHHHHHHHHhc-CCCcccCceEEEEECCCCCcce
Confidence 6799999999999997 3 3455667788887422 578888888888875431 211000101 134
Q ss_pred EEEEehh-----HhhhHhhhcCCCcEEEEEccC--chhhhhhccCCCCCCccccccCCCCcceeEEEeeEeeeccccccc
Q 001049 78 WIRMGTT-----VATNALLERKGERIALCVTRG--FKDLLQIGNQARPQIFDLTVSTPSNLYEEVIEVDERVELVLENEK 150 (1173)
Q Consensus 78 ~i~hGTT-----~atNAllerkg~rvglitt~G--frD~l~igr~~rp~~~~~~~~~P~~l~~~~~~v~eRi~~~g~~~~ 150 (1173)
.++||-. .+-=-.--+-|+||--+++-- -+|+=+| ++.+|
T Consensus 79 mvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i-~~~~P-------------------------------- 125 (457)
T PF13941_consen 79 MVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEI-REIRP-------------------------------- 125 (457)
T ss_pred EEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHH-hccCC--------------------------------
Confidence 4555522 222222223455554443210 0111111 01111
Q ss_pred ccccceeecccCceeEEecCCCHHHHHHHHHHHHHCCCcE-EEEEccCcCCCchhHHHHHHHHHhcCCceeeeeccccCc
Q 001049 151 ENQESLVKGVSGELVRVVKPVNEKTLEPLLKGLLEKGISC-LAVVLMHSYTFPQHEMAVEKLALGLGFRHVSLSSALTPM 229 (1173)
Q Consensus 151 ~~~~~~v~G~~g~~g~v~~plde~~v~~~~~~l~~~gv~a-vAV~~l~S~~np~hE~rv~ei~~~~~~~~Vs~S~ei~p~ 229 (1173)
+..++-||++. =|.+-+.+.++.|.+.+.+. |.++. |.+.-.++++|+.+.+. +++.---|.|+
T Consensus 126 --DiILLaGGtDg-------G~~~~il~nA~~La~~~~~~pVIyAG-----N~~a~~~v~~il~~~~~-~~~~~~NV~P~ 190 (457)
T PF13941_consen 126 --DIILLAGGTDG-------GNKEVILHNAEMLAEANLRIPVIYAG-----NKAAQDEVEEILEKAGK-EVVITENVMPK 190 (457)
T ss_pred --CEEEEeCCccC-------CchHHHHHHHHHHHhCCCCCcEEEEC-----CHHHHHHHHHHHHhCCC-CEEEeCCCCCC
Confidence 33445554431 25677888889998887775 44444 77888889999997554 56666778898
Q ss_pred CCcccchhHHHHHhcchHHHHHHHHHHHHHHHhcCCCceEEEEEcCCCccccccccccceecccchhhHHHHHHhccccc
Q 001049 230 VRAVPRGLTASVDAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFGLE 309 (1173)
Q Consensus 230 ~~e~eR~~TtvlNAyl~p~~~~yl~~l~~~L~~~~~~~~l~im~s~GG~~s~~~~~pv~ti~SGPa~Gv~Ga~~l~~~~~ 309 (1173)
++...=..+ ++.+..+-.+ .|++.- |+-.+.+.. =..+..=|++=..++..++..
T Consensus 191 i~~ln~~pa-----------R~~I~~~F~~----------~Ii~ak-Gl~~~~~~~-~~~i~PTP~AVl~~~~lla~~-- 245 (457)
T PF13941_consen 191 IDVLNVEPA-----------REAIREVFLR----------HIIQAK-GLSKLREMV-DGPIMPTPAAVLRAAELLAEG-- 245 (457)
T ss_pred CCCcChHHH-----------HHHHHHHHHH----------HHhcCC-CHHHHHHHh-CCcccCCHHHHHHHHHHHHhc--
Confidence 887654333 3333322110 011111 111111110 123344577777788888742
Q ss_pred CCCCEEEEecCCCceEEeee-eceeee
Q 001049 310 TEKPLIGFDMGGTSTDVSRY-AGSYEQ 335 (1173)
Q Consensus 310 g~~~~I~~DmGGTStDv~li-~G~~~~ 335 (1173)
+..+++++||||.||||--+ +|.|+.
T Consensus 246 ~~g~llvVDIGGATTDVhSv~~~~~~~ 272 (457)
T PF13941_consen 246 GIGDLLVVDIGGATTDVHSVAEGSPEI 272 (457)
T ss_pred ccCCEEEEEccCcccchhhhccCCccc
Confidence 67899999999999999655 577754
No 10
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=97.48 E-value=0.007 Score=72.29 Aligned_cols=133 Identities=18% Similarity=0.176 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEccCcCCCchhHHHHHHHHHhcCCceeeeeccccCcCCcccchhHHHHHhcchHHHHH
Q 001049 172 NEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGLGFRHVSLSSALTPMVRAVPRGLTASVDAYLTPVIKE 251 (1173)
Q Consensus 172 de~~v~~~~~~l~~~gv~avAV~~l~S~~np~hE~rv~ei~~~~~~~~Vs~S~ei~p~~~e~eR~~TtvlNAyl~p~~~~ 251 (1173)
|++-+.+.++.|.+.+.+.=.|.- =|-+--.++++|+.+.+. ++..---|.|.+....=..+ ++
T Consensus 134 ~~e~~l~NA~~La~~~~~~pIIyA----GN~~a~~~V~~il~~~~~-~~~i~eNV~P~i~~ln~epa-----------R~ 197 (463)
T TIGR01319 134 EEECGIHNAKMLAEHGLDCAIIVA----GNKDIQDEVQEIFDHADI-FYRITDNVLPDLDHLNPEAA-----------RE 197 (463)
T ss_pred chHHHHHHHHHHHhcCCCCcEEEe----CCHHHHHHHHHHHhcCCc-eEEecCCcCCCCCCcCchHH-----------HH
Confidence 456678888888887775433332 255666678888886555 56667778998887654443 44
Q ss_pred HHHHH-HHHHHh-cCCCceEEEEEcCCCccccccccccceecccchhhHHHHHHhccc---ccCCCCEEEEecCCCceEE
Q 001049 252 YLSGF-MSKFDE-GLAKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFG---LETEKPLIGFDMGGTSTDV 326 (1173)
Q Consensus 252 yl~~l-~~~L~~-~~~~~~l~im~s~GG~~s~~~~~pv~ti~SGPa~Gv~Ga~~l~~~---~~g~~~~I~~DmGGTStDv 326 (1173)
.+.++ .+.+-+ .+.+. +.. ..-..+..=|.+=..++..++.. ..|..++|++||||.||||
T Consensus 198 ~I~~vF~~~Iv~akGl~~-------------i~~-~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDv 263 (463)
T TIGR01319 198 AICDIFLKKIVEAKGLDN-------------AED-FIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDV 263 (463)
T ss_pred HHHHHHHHHHhcCCCHHH-------------HHH-HhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccch
Confidence 44443 333222 11110 101 01123455576666777777631 1234689999999999999
Q ss_pred eee-eceee
Q 001049 327 SRY-AGSYE 334 (1173)
Q Consensus 327 ~li-~G~~~ 334 (1173)
--+ .|.|.
T Consensus 264 hSv~~g~~~ 272 (463)
T TIGR01319 264 HSAAAGELS 272 (463)
T ss_pred hhccCCCcc
Confidence 766 58775
No 11
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.013 Score=64.48 Aligned_cols=219 Identities=18% Similarity=0.176 Sum_probs=123.4
Q ss_pred CceEEEEEcCCCcccccccc-ccceecccchhhHHHHH-HhcccccCCCCEEEEecCCCceEEeeee-ceeeee-e--e-
Q 001049 266 KVNVLFMQSDGGLAPESRFS-GHKAVLSGPAGGVVGYS-QTLFGLETEKPLIGFDMGGTSTDVSRYA-GSYEQV-L--E- 338 (1173)
Q Consensus 266 ~~~l~im~s~GG~~s~~~~~-pv~ti~SGPa~Gv~Ga~-~l~~~~~g~~~~I~~DmGGTStDv~li~-G~~~~~-~--~- 338 (1173)
++|++++.+||-+.|.+..+ |-+.-. +--.+.+ +++ . .-.+++|.+|||.|||||=-|. |+.... + +
T Consensus 88 ~~pv~~v~~~G~~~ssEa~~~~~~vAA----aNW~Ata~~~~-e-~~~dsci~VD~GSTTtDIIPi~~ge~~ag~tDlER 161 (330)
T COG1548 88 NCPVYVVDVNGNFLSSEALKNPREVAA----ANWVATARFLA-E-EIKDSCILVDMGSTTTDIIPIKDGEAAAGKTDLER 161 (330)
T ss_pred CCceEEEeccCcCcChhHhcCHHHHHH----hhhHHHHHHHH-H-hcCCceEEEecCCcccceEeecchhhhhccchHHH
Confidence 78999999999999975433 443322 2233333 334 2 1234699999999999998774 753211 0 1
Q ss_pred ------eEEccEEEeecceeeEEEeccCCcEEEEeCCeEEECccccCCCCCcceeccCCccccchHHHHccccCCCCCCC
Q 001049 339 ------TQIAGAIIQAPQLDINTVAAGGGSNLMFQLGAFRVGPESVGAHPGPVCYRKGGDLAVTDANLILGFVIPDYFPS 412 (1173)
Q Consensus 339 ------~~i~g~~~~~p~~di~sIGaGGGSia~v~~G~l~VGP~SAGa~PGPacYg~GG~pTvTDA~lvLG~l~p~~fl~ 412 (1173)
..++-.++++..+- +-| -++++ |-|.||-. -.++.|++++||.++++.|-
T Consensus 162 L~~gELvY~GtLRTpvs~ll-~kv--------e~~g~------------~~~~ssE~--FAitAD~~lilg~I~eedYT- 217 (330)
T COG1548 162 LKNGELVYVGTLRTPVSFLL-NKV--------EFEGK------------LTPLSSEY--FAITADASLILGKITEEDYT- 217 (330)
T ss_pred HhcCceEEEeeccccHHHHh-hhh--------ccCCC------------cccccHHH--HHHHHHHHHHhcCCChhhcC-
Confidence 11121222211110 000 00111 22444411 14788999999999988764
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHhhccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEE
Q 001049 413 IFGPNEDQPLDINATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACF 492 (1173)
Q Consensus 413 ~~g~gG~~~Ld~~~a~~a~~~ia~~lg~~~~~~~~~~~gl~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~Lvaf 492 (1173)
---|.|.- -+++.+ +.+||+-+=.-++.+.+ -.+-+.|..+++.--..++..|..++.+.|++ +++ -
T Consensus 218 c~TpDGaG-ks~eec---mrRlaR~vCaDleelg~----~~v~d~A~~~~~~~l~~l~e~I~~~a~r~gL~----~Vv-~ 284 (330)
T COG1548 218 CDTPDGAG-KSREEC---MRRLARTVCADLEELGE----EEVIDLAEKAYNALLELLAENIEEKAKRYGLN----TVV-A 284 (330)
T ss_pred CCCCCCCC-CCHHHH---HHHHHHHHhCCHHHcCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh----hhh-h
Confidence 12223322 244444 33344333110111111 24677888888888899999999999999998 334 3
Q ss_pred cCchhhhHHHHHHHcCCCEEEECCC-----CCccchhccc
Q 001049 493 GGAGPQHACAIARSLGMREVLIHRF-----CGILSAYGMG 527 (1173)
Q Consensus 493 GGaGplha~~lA~~lGi~~VivP~~-----~~v~sA~G~~ 527 (1173)
-|.|--....-+++||..-..+-.. +-|+-|+|++
T Consensus 285 ~GlGefLi~~A~~~lg~ec~~i~e~~g~~~s~v~PA~a~a 324 (330)
T COG1548 285 TGLGEFLIQEACKRLGYECISIDETYGKEVSKVAPAVAAA 324 (330)
T ss_pred ccchHHHHHHHHHhhCCeEEEhhhhhccchhhhchHHHHH
Confidence 4566666667778888764333321 4456666654
No 12
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=96.22 E-value=0.034 Score=61.98 Aligned_cols=65 Identities=20% Similarity=0.294 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCchhhh--HHHHHHHcCCCEEEECCCCCccchhccccc
Q 001049 460 GFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQH--ACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1173)
Q Consensus 460 gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaGplh--a~~lA~~lGi~~VivP~~~~v~sA~G~~~a 529 (1173)
.+++-..+++.+.|++...+.+.+ .++..||+.-+. .-.+.+.+|++ |.+|.+|....|+|++++
T Consensus 173 ~~i~~~~~~i~~~i~~~l~~~~~~----~v~LtGG~a~ipgl~e~l~~~lg~~-v~~~~~P~~~va~Gaa~~ 239 (239)
T TIGR02529 173 PVVKPVYQKMASIVKRHIEGQGVK----DLYLVGGACSFSGFADVFEKQLGLN-VIKPQHPLYVTPLGIAMS 239 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC----EEEEECchhcchhHHHHHHHHhCCC-cccCCCCCeehhheeecC
Confidence 455556677888888777654443 466667775443 34677889997 788999999999999875
No 13
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=94.74 E-value=0.018 Score=64.86 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCchhhhHHH---H----HHHc-CCCEEEECCCCCccchhcc
Q 001049 455 EDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQHACA---I----ARSL-GMREVLIHRFCGILSAYGM 526 (1173)
Q Consensus 455 eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaGplha~~---l----A~~l-Gi~~VivP~~~~v~sA~G~ 526 (1173)
.+.|..|++-+...+++.++.+..+-+..... ++..||--. +... + .+.+ .. .+.+|..|....|+|+
T Consensus 192 d~~a~~Il~~a~~~la~~i~~~~~~~~~~~~~--v~l~GGv~~-~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~a~GA 267 (271)
T PF01869_consen 192 DEVARDILAEAADELAELIKAVLKRLGPEKEP--VVLSGGVFK-NSPLVKALRDALKEKLPKV-PIIIPVEPQYDPAYGA 267 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTCTCCCCS--EEEESGGGG-CHHHHHHHGGGS-HHHHCC-TCECECCGSSHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCCCCCe--EEEECCccC-chHHHHHHHHHHHHhcCCC-ceEECCCCCccHHHHH
Confidence 36677788777788887777776554332222 455555422 2221 1 2323 33 3567777788888887
Q ss_pred cc
Q 001049 527 GL 528 (1173)
Q Consensus 527 ~~ 528 (1173)
++
T Consensus 268 al 269 (271)
T PF01869_consen 268 AL 269 (271)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 14
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=94.29 E-value=0.55 Score=53.24 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCchhh--hHHHHHHHcCCCEEEECCCCCccchhcccc
Q 001049 459 LGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQ--HACAIARSLGMREVLIHRFCGILSAYGMGL 528 (1173)
Q Consensus 459 ~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaGpl--ha~~lA~~lGi~~VivP~~~~v~sA~G~~~ 528 (1173)
..+++-..+.+.+.|+....+. ++. .++-.||+.-+ ..-.+.+.+|++ |.+|.+|....|+|++.
T Consensus 199 ~~ii~~~~~~i~~~i~~~l~~~--~~~--~IvLtGG~s~lpgl~e~l~~~lg~~-v~~~~~P~~~~a~Gaa~ 265 (267)
T PRK15080 199 FPVVKPVVEKMASIVARHIEGQ--DVE--DIYLVGGTCCLPGFEEVFEKQTGLP-VHKPQHPLFVTPLGIAL 265 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCC--EEEEECCcccchhHHHHHHHHhCCC-cccCCCchHHHHHHHHh
Confidence 3455666667777777766543 343 34555666533 334677889987 78899999999999875
No 15
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=93.56 E-value=0.51 Score=54.86 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=30.3
Q ss_pred EEEEcCchhhhHHHHHHHcCC--CEEEECCCCCccchhccc
Q 001049 489 LACFGGAGPQHACAIARSLGM--REVLIHRFCGILSAYGMG 527 (1173)
Q Consensus 489 LvafGGaGplha~~lA~~lGi--~~VivP~~~~v~sA~G~~ 527 (1173)
++..||++.++...|-+..+. .+++++..|..++|-|++
T Consensus 276 I~~vGGGA~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 276 IFFVGGGAILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp EEEESTTHHHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 455688888888888888774 679999999999999975
No 16
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=92.38 E-value=0.26 Score=56.23 Aligned_cols=72 Identities=22% Similarity=0.137 Sum_probs=43.9
Q ss_pred CCCCceEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChH----HHHHHHHHHHhhCCCCCCCCCCCCCCeeEE
Q 001049 4 VKEEKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAP----VEGIRRILEEYTGEKIPRTSKIPTDKIEWI 79 (1173)
Q Consensus 4 ~~~~~~rigIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~~~~~~~----~~gi~~~l~~~~~~~~~~~~~~~~~~v~~i 79 (1173)
|..++|.||||-|||-|=+++.|.+|+++-..|.. |.|+.... ..-|.+++.++.++ .+.++++|...
T Consensus 1 ~~~~~~~lGVDGGGTkt~a~l~~~~g~vlg~g~sG---pAN~~~~~~e~A~~ni~~ai~~A~~~-----aG~~~~~i~~~ 72 (301)
T COG2971 1 MEPMPYFLGVDGGGTKTRAVLADEDGNVLGRGKSG---PANIQLVGKEEAVRNIKDAIREALDE-----AGLKPDEIAAI 72 (301)
T ss_pred CCCccEEEEEccCCcceEEEEEcCCCcEEEEeccC---CceecccchHHHHHHHHHHHHHHHHh-----cCCCHHHhCce
Confidence 34567999999999999999998778866666653 33332222 22233333333221 35667777665
Q ss_pred EEeh
Q 001049 80 RMGT 83 (1173)
Q Consensus 80 ~hGT 83 (1173)
..|.
T Consensus 73 ~agl 76 (301)
T COG2971 73 VAGL 76 (301)
T ss_pred eeee
Confidence 5554
No 17
>PRK00047 glpK glycerol kinase; Provisional
Probab=90.60 E-value=0.35 Score=59.53 Aligned_cols=75 Identities=19% Similarity=0.084 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCch--hhhHHHHHHHcCCCEEEECCCCCccchhccccc
Q 001049 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1173)
Q Consensus 452 l~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaG--plha~~lA~~lGi~~VivP~~~~v~sA~G~~~a 529 (1173)
.+..+.+.++++=..-++...++.+....|..++. |.+.||+. ++..-.+|+.||.+ |.++..+. .+|+|+++.
T Consensus 372 ~~~~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~--i~~~GGga~s~~w~Qi~ADvlg~p-V~~~~~~e-~~a~GaA~~ 447 (498)
T PRK00047 372 TTKEHIIRATLESIAYQTRDVLDAMQADSGIRLKE--LRVDGGAVANNFLMQFQADILGVP-VERPVVAE-TTALGAAYL 447 (498)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCce--EEEecCcccCHHHHHHHHHhhCCe-eEecCccc-chHHHHHHH
Confidence 35677777777766667777776665545776553 44445531 23334689999987 77777554 678998875
Q ss_pred c
Q 001049 530 D 530 (1173)
Q Consensus 530 d 530 (1173)
-
T Consensus 448 A 448 (498)
T PRK00047 448 A 448 (498)
T ss_pred H
Confidence 4
No 18
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=90.53 E-value=0.48 Score=56.40 Aligned_cols=69 Identities=20% Similarity=0.368 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCCCceEEEEcCchhhhH---HHHHHHcCCCEEEECCCCCccchhcc
Q 001049 451 DMTVEDIALGFVNVANETMCR-PIRQLTEMKGHETRNHALACFGGAGPQHA---CAIARSLGMREVLIHRFCGILSAYGM 526 (1173)
Q Consensus 451 gl~~eeaA~gi~~ia~~~Ma~-air~~~~~rG~dprdf~LvafGGaGplha---~~lA~~lGi~~VivP~~~~v~sA~G~ 526 (1173)
|.+.++.+.|+..-..++... .++. ++.++- ++--||- .... -.+.+.||.+ +++|++|....|+|+
T Consensus 327 G~~~eDIaAGl~~SIa~rv~~~l~~~------~~i~~~-VvftGGv-a~N~gvv~ale~~Lg~~-iivPe~pq~~GAiGA 397 (404)
T TIGR03286 327 GASPEDVAAAACHSVAEQVYEQQLQE------IDVREP-VILVGGT-SLIEGLVKALGDLLGIE-VVVPEYSQYIGAVGA 397 (404)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhc------CCCCCc-EEEECCh-hhhHHHHHHHHHHhCCc-EEECCcccHHHHHHH
Confidence 689999999998777766664 2332 334443 2333442 2222 2456788976 999999999999999
Q ss_pred cc
Q 001049 527 GL 528 (1173)
Q Consensus 527 ~~ 528 (1173)
++
T Consensus 398 AL 399 (404)
T TIGR03286 398 AL 399 (404)
T ss_pred HH
Confidence 86
No 19
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=90.49 E-value=0.55 Score=53.84 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCchhhh---HHHHHHHcCCCEEEECCCCCccchhccc
Q 001049 451 DMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQH---ACAIARSLGMREVLIHRFCGILSAYGMG 527 (1173)
Q Consensus 451 gl~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaGplh---a~~lA~~lGi~~VivP~~~~v~sA~G~~ 527 (1173)
|.+.++.+.|+.+-...+.+..++++ ++.+ - +.|.|+-..+ ...+.+.||.+-..+|++|....|+|++
T Consensus 212 G~~~edI~aGl~~sia~rv~~~~~~~----~i~~--~--v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAA 283 (293)
T TIGR03192 212 GYTKNMVIAAYCQAMAERVVSLLERI----GVEE--G--FFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAA 283 (293)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccc----CCCC--C--EEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHH
Confidence 57788888887766665555444432 2221 1 2344442222 2346667777633357778888888877
Q ss_pred cc
Q 001049 528 LA 529 (1173)
Q Consensus 528 ~a 529 (1173)
+-
T Consensus 284 L~ 285 (293)
T TIGR03192 284 LF 285 (293)
T ss_pred HH
Confidence 63
No 20
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=90.05 E-value=1.5 Score=51.01 Aligned_cols=48 Identities=8% Similarity=0.049 Sum_probs=34.7
Q ss_pred HhCCCCCCceEEEEcCchhhhHHHHHHHcCCCEEEECCCCCccchhcccc
Q 001049 479 MKGHETRNHALACFGGAGPQHACAIARSLGMREVLIHRFCGILSAYGMGL 528 (1173)
Q Consensus 479 ~rG~dprdf~LvafGGaGplha~~lA~~lGi~~VivP~~~~v~sA~G~~~ 528 (1173)
+++.|.+ .++..||++.++...+.+...-.++.+++.|--+||-|...
T Consensus 269 ~~~~~~~--~Iil~GGGa~ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~ 316 (320)
T TIGR03739 269 GAPESIQ--NIVLVGGGAFLFKKAVKAAFPKHRIVEVDEPMFANVRGFQI 316 (320)
T ss_pred ccCCccc--EEEEeCCcHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHH
Confidence 4455644 46667788778888887777655677888888899988753
No 21
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=89.88 E-value=2.1 Score=46.14 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCchhhh--HHHHHHHcCCCEEEECCCCCccchhcccccce
Q 001049 459 LGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQH--ACAIARSLGMREVLIHRFCGILSAYGMGLADV 531 (1173)
Q Consensus 459 ~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaGplh--a~~lA~~lGi~~VivP~~~~v~sA~G~~~ad~ 531 (1173)
+-+++=+-++||.-++.....+|..+ |+..|||...- ....-++|+++ |..|.||-..--+|+++|-.
T Consensus 204 f~~v~PV~eKMAeIv~~hie~~~i~d----l~lvGGac~~~g~e~~Fe~~l~l~-v~~P~~p~y~TPLgIA~sg~ 273 (277)
T COG4820 204 FPVVKPVYEKMAEIVARHIEGQGITD----LWLVGGACMQPGVEELFEKQLALQ-VHLPQHPLYMTPLGIASSGR 273 (277)
T ss_pred ccchhHHHHHHHHHHHHHhccCCCcc----eEEecccccCccHHHHHHHHhccc-cccCCCcceechhhhhhccc
Confidence 34556677999999999999888765 77789975332 23456688887 89999999988999887753
No 22
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=89.35 E-value=3 Score=52.70 Aligned_cols=75 Identities=17% Similarity=0.116 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc-eEEEEcCchhhhH--HHHHHHcCCCEEEECCCCCccchhcccc
Q 001049 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNH-ALACFGGAGPQHA--CAIARSLGMREVLIHRFCGILSAYGMGL 528 (1173)
Q Consensus 452 l~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf-~LvafGGaGplha--~~lA~~lGi~~VivP~~~~v~sA~G~~~ 528 (1173)
++.++.-.- ++-..+.+.+.|+.+..+.|+.+.+. .++..||+.-+-. -.+.+.+| ..+..+.+|.-.-|+|+++
T Consensus 291 itr~~fe~l-~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~~~pdeava~GAa~ 368 (595)
T TIGR02350 291 LTRAKFEEL-TADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNKSVNPDEVVAIGAAI 368 (595)
T ss_pred EeHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhC-CcccCCcCcHHHHHHHHHH
Confidence 344444322 22333456677777778888877764 4566777654333 35666678 4466677788888888876
No 23
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=88.95 E-value=0.93 Score=50.70 Aligned_cols=69 Identities=23% Similarity=0.336 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCchhhhH---HHHHHHcCCCEEEECCCCCccchhccc
Q 001049 451 DMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQHA---CAIARSLGMREVLIHRFCGILSAYGMG 527 (1173)
Q Consensus 451 gl~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaGplha---~~lA~~lGi~~VivP~~~~v~sA~G~~ 527 (1173)
|.+.++.+.++++-...++++.++. ++++... .+.|++.... -.+++.||.+ |++|+++..+.|+|++
T Consensus 176 g~~~~di~~~~~~~va~~i~~~~~~------~~~~~~V--vl~GGva~n~~l~~~l~~~lg~~-v~~~~~~~~~~AlGaA 246 (248)
T TIGR00241 176 GVKKEDILAGVYESIAERVAEMLQR------LKIEAPI--VFTGGVSKNKGLVKALEKKLGMK-VITPPEPQIVGAVGAA 246 (248)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhh------cCCCCCE--EEECccccCHHHHHHHHHHhCCc-EEcCCCccHHHHHHHH
Confidence 4678888888877666666654422 2344333 3333333322 3578889986 8999999999999998
Q ss_pred c
Q 001049 528 L 528 (1173)
Q Consensus 528 ~ 528 (1173)
+
T Consensus 247 l 247 (248)
T TIGR00241 247 L 247 (248)
T ss_pred h
Confidence 6
No 24
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=88.49 E-value=0.54 Score=58.23 Aligned_cols=86 Identities=12% Similarity=0.015 Sum_probs=55.0
Q ss_pred ceEEEEeccCccccEEEEecCCceEEEEEeccC----CCC-C-C---CChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeE
Q 001049 8 KLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSV----DPT-N-Y---DDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEW 78 (1173)
Q Consensus 8 ~~rigIDvGGTfTD~v~~~~~g~~~~~~K~~st----~p~-~-~---~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~v~~ 78 (1173)
++.||||+|.|.+-++++|.+|+++...+.+.+ .|. + . ++...+.+..+++++..+ .+++.++|..
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~-----~~~~~~~I~a 77 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQK-----AGIPASDIAA 77 (520)
T ss_pred cEEEEEecCCCceEEEEECCCCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHH-----cCCCccceEE
Confidence 489999999999999999888885555543311 111 0 0 122455555555554322 1344567888
Q ss_pred EEEehhHhhhHhhhcCCCcE
Q 001049 79 IRMGTTVATNALLERKGERI 98 (1173)
Q Consensus 79 i~hGTT~atNAllerkg~rv 98 (1173)
|..+|...+-.++-++|..+
T Consensus 78 I~~s~~~~~~v~~D~~g~pl 97 (520)
T PRK10939 78 VSATSMREGIVLYDRNGTEI 97 (520)
T ss_pred EEEECCcccEEEECCCCCEe
Confidence 88888777777777777665
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=88.39 E-value=2 Score=49.86 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CceEEEEcCch--hhhHHHHHHHcCCCEEEECCCCCccchhc
Q 001049 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETR----NHALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAYG 525 (1173)
Q Consensus 452 l~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dpr----df~LvafGGaG--plha~~lA~~lGi~~VivP~~~~v~sA~G 525 (1173)
++.++.. .++.-..+.+.+.|+........+.+ +..++..||+. |...-.+.++++++ |.++.+|-...|.|
T Consensus 244 i~~~~~~-e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~-v~~~~~p~~ava~G 321 (335)
T PRK13930 244 ISSEEVR-EALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLP-VHIAEDPLTCVARG 321 (335)
T ss_pred ECHHHHH-HHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCC-ceecCCHHHHHHHH
Confidence 3445554 33333345666666666555433332 12377788887 66667899999987 67888889999999
Q ss_pred cccc
Q 001049 526 MGLA 529 (1173)
Q Consensus 526 ~~~a 529 (1173)
++..
T Consensus 322 a~~~ 325 (335)
T PRK13930 322 TGKA 325 (335)
T ss_pred HHHH
Confidence 9875
No 26
>PRK13321 pantothenate kinase; Reviewed
Probab=88.06 E-value=1 Score=50.66 Aligned_cols=63 Identities=13% Similarity=0.059 Sum_probs=41.4
Q ss_pred EEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEEeh
Q 001049 10 RFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRMGT 83 (1173)
Q Consensus 10 rigIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~~~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~v~~i~hGT 83 (1173)
.++||+|||++-+.++++ ++++...|.+| ...+..+.+.+.+...+++. +.++++++.+.+|+
T Consensus 2 iL~IDIGnT~ik~gl~~~-~~i~~~~~~~T-~~~~~~~~~~~~l~~l~~~~---------~~~~~~i~~i~vss 64 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDG-DRLLRSFRLPT-DKSRTSDELGILLLSLFRHA---------GLDPEDIRAVVISS 64 (256)
T ss_pred EEEEEECCCeEEEEEEEC-CEEEEEEEEec-CCCCCHHHHHHHHHHHHHHc---------CCChhhCCeEEEEe
Confidence 589999999999999963 46344567754 22333456677777776652 23345677777776
No 27
>PRK13318 pantothenate kinase; Reviewed
Probab=87.75 E-value=1.5 Score=49.30 Aligned_cols=63 Identities=17% Similarity=0.086 Sum_probs=41.3
Q ss_pred EEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEEeh
Q 001049 10 RFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRMGT 83 (1173)
Q Consensus 10 rigIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~~~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~v~~i~hGT 83 (1173)
.++||+|||++-..++| +++++...|.+| ......+.+.+.+...++.. ++++++++.|.+|+
T Consensus 2 iL~IDIGnT~iK~al~d-~g~i~~~~~~~t-~~~~~~~~~~~~l~~l~~~~---------~~~~~~i~~I~iss 64 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-GGKLVAHWRIST-DSRRTADEYGVWLKQLLGLS---------GLDPEDITGIIISS 64 (258)
T ss_pred EEEEEECCCcEEEEEEE-CCEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHc---------CCCcccCceEEEEE
Confidence 58999999999999997 566445556654 22333344556666655442 23345678888887
No 28
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=87.49 E-value=0.51 Score=58.04 Aligned_cols=75 Identities=20% Similarity=0.136 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCch--hhhHHHHHHHcCCCEEEECCCCCccchhccccc
Q 001049 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1173)
Q Consensus 452 l~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaG--plha~~lA~~lGi~~VivP~~~~v~sA~G~~~a 529 (1173)
.+..+.+.++++=..-+|...++.+....|..++. |.+.||+. ++..-.+|+.+|.+ |.++..+ -.+|+|+++.
T Consensus 368 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~--i~~~GGga~s~~w~Qi~ADv~g~p-v~~~~~~-e~~alGaA~~ 443 (493)
T TIGR01311 368 TTKAHIARAALEAIAFQTRDVLEAMEKDAGVEITK--LRVDGGMTNNNLLMQFQADILGVP-VVRPKVT-ETTALGAAYA 443 (493)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCce--EEEecccccCHHHHHHHHHhcCCe-eEecCCC-cchHHHHHHH
Confidence 45677777777777777777777765544654433 44445442 23345789999988 6776654 4678998775
Q ss_pred c
Q 001049 530 D 530 (1173)
Q Consensus 530 d 530 (1173)
-
T Consensus 444 a 444 (493)
T TIGR01311 444 A 444 (493)
T ss_pred H
Confidence 4
No 29
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=87.45 E-value=1.4 Score=49.93 Aligned_cols=72 Identities=15% Similarity=0.247 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCchhhh---HHHHHHHcCCCE----EEECCCCCccc
Q 001049 450 KDMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQH---ACAIARSLGMRE----VLIHRFCGILS 522 (1173)
Q Consensus 450 ~gl~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaGplh---a~~lA~~lGi~~----VivP~~~~v~s 522 (1173)
.|.+.++.+.|+.+-...+.+.-++.+- ..+-.++.-||- ... .-.+-++|+-.+ |.+|+++..+.
T Consensus 182 ~G~~~edI~aGl~~sia~r~~~~~~~~~------~~~~~v~~~GGv-a~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~g 254 (262)
T TIGR02261 182 RGISAPNILKGIHESMADRLAKLLKSLG------ALDGTVLCTGGL-ALDAGLLEALKDAIQEAKMAVAAENHPDAIYAG 254 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhccC------CCCCcEEEECcc-cccHHHHHHHHHHhccCCcceEecCCCcchHHH
Confidence 3689999999999877777766665442 111123334442 221 234566674322 55678999999
Q ss_pred hhcccc
Q 001049 523 AYGMGL 528 (1173)
Q Consensus 523 A~G~~~ 528 (1173)
|+|+++
T Consensus 255 AlGAAl 260 (262)
T TIGR02261 255 AIGAAL 260 (262)
T ss_pred HHHHHH
Confidence 999986
No 30
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=87.23 E-value=1.5 Score=51.55 Aligned_cols=71 Identities=24% Similarity=0.405 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCCCceEEEEcCchhhhHH--HHHHHcCCCEEEECCCCCccchhcc
Q 001049 450 KDMTVEDIALGFVNVANETMCR-PIRQLTEMKGHETRNHALACFGGAGPQHAC--AIARSLGMREVLIHRFCGILSAYGM 526 (1173)
Q Consensus 450 ~gl~~eeaA~gi~~ia~~~Ma~-air~~~~~rG~dprdf~LvafGGaGplha~--~lA~~lGi~~VivP~~~~v~sA~G~ 526 (1173)
.|.++|+++.|+..-..+|+.. -+ +..|+++- ++.-||-.-.-+. .+.+.||++ |++|+++++..|+|+
T Consensus 313 ~G~~~EdI~AGl~~Sv~~~v~~~~~------~~~~i~~~-iv~~GGva~n~av~~ale~~lg~~-V~vP~~~ql~GAiGA 384 (396)
T COG1924 313 EGASPEDILAGLAYSVAENVAEKVI------KRVDIEEP-IVLQGGVALNKAVVRALEDLLGRK-VIVPPYAQLMGAIGA 384 (396)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHh------hccCCCCC-EEEECcchhhHHHHHHHHHHhCCe-eecCCccchhhHHHH
Confidence 3689999999999877777765 33 33556665 5666776433332 456678865 999999999999999
Q ss_pred cc
Q 001049 527 GL 528 (1173)
Q Consensus 527 ~~ 528 (1173)
++
T Consensus 385 AL 386 (396)
T COG1924 385 AL 386 (396)
T ss_pred HH
Confidence 86
No 31
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=87.21 E-value=2.3 Score=47.59 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=21.1
Q ss_pred HHHHHHhcccccCCCCEEEEecCCCceEEeeee-cee
Q 001049 298 VVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA-GSY 333 (1173)
Q Consensus 298 v~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~-G~~ 333 (1173)
..|+.++. ...+. ++||||..+++..++ |++
T Consensus 82 ~~g~~~~~----~~~~~-vidiGgqd~k~i~~~~g~~ 113 (248)
T TIGR00241 82 GKGANYLA----PEARG-VIDIGGQDSKVIKIDDGKV 113 (248)
T ss_pred HHHHHHHC----CCCCE-EEEecCCeeEEEEECCCcE
Confidence 45666664 22344 799999999998885 543
No 32
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=87.15 E-value=1.1 Score=51.50 Aligned_cols=55 Identities=20% Similarity=0.085 Sum_probs=38.0
Q ss_pred CCceEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHHhh
Q 001049 6 EEKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYT 61 (1173)
Q Consensus 6 ~~~~rigIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~~~~~~~~~gi~~~l~~~~ 61 (1173)
++++.+|||+|||.+.++++|.+|+++...+.++. ..+....+.+.|...++++.
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~-~~~~~~~~~~~i~~~i~~~~ 58 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTP-TPDPEEAILEAILALVAELL 58 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecC-CCCchhHHHHHHHHHHHHHH
Confidence 45689999999999999999877873344444432 23333467777777776653
No 33
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=86.66 E-value=1.7 Score=40.91 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=33.0
Q ss_pred EEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHH
Q 001049 10 RFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEE 59 (1173)
Q Consensus 10 rigIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~~~~~~~~~gi~~~l~~ 59 (1173)
.+|||+|||++=+.++|++|++....|.+++ .+ ...+.+.|.+.+++
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~--~~-~~~~~~~l~~~i~~ 49 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPR--TN-KEADAARLKKLIKK 49 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEe--cC-cchHHHHHHHHHHH
Confidence 5899999999999999877875556666542 22 23456666666654
No 34
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=85.97 E-value=0.65 Score=51.48 Aligned_cols=74 Identities=18% Similarity=0.036 Sum_probs=45.4
Q ss_pred eEEEEeccCccccEEEEecCCceEEEEEecc--CCCCC-----CCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEE
Q 001049 9 LRFCIDRGGTFTDVYAEIPGQLEGQVLKLLS--VDPTN-----YDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRM 81 (1173)
Q Consensus 9 ~rigIDvGGTfTD~v~~~~~g~~~~~~K~~s--t~p~~-----~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~v~~i~h 81 (1173)
|.+|||+|.|++-++++|.+|+++...+.+. .++++ -++.+.+.+..+++++... .+.+..+|..|..
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~-----~~~~~~~I~aI~i 75 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQ-----AGIDPEQIKAIGI 75 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHH-----CTSCGGGEEEEEE
T ss_pred CEEEEEEcccceEEEEEeCCCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhh-----cCcccceeEEEEe
Confidence 5799999999999999998888554444321 11211 1133455555555555432 2345678888888
Q ss_pred ehhHhh
Q 001049 82 GTTVAT 87 (1173)
Q Consensus 82 GTT~at 87 (1173)
+|+..+
T Consensus 76 s~~~~~ 81 (245)
T PF00370_consen 76 SGQGHG 81 (245)
T ss_dssp EE-SSE
T ss_pred ccccCC
Confidence 776433
No 35
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=85.71 E-value=1.8 Score=50.91 Aligned_cols=49 Identities=20% Similarity=0.103 Sum_probs=33.7
Q ss_pred ceEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHHh
Q 001049 8 KLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEY 60 (1173)
Q Consensus 8 ~~rigIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~~~~~~~~~gi~~~l~~~ 60 (1173)
++.+|||+|.|-|.+|++++++.+...+.. + ++-++. ..+.++++++++
T Consensus 135 ~~~LGID~GSTtTK~VLm~d~~~I~~~~~~-~-t~g~p~--~~~~l~~~le~l 183 (396)
T COG1924 135 MYTLGIDSGSTTTKAVLMEDGKEILYGFYV-S-TKGRPI--AEKALKEALEEL 183 (396)
T ss_pred cEEEEEecCCcceeEEEEeCCCeEEEEEEE-c-CCCChh--HHHHHHHHHHHc
Confidence 588999999999999999655432233333 3 355443 457788888775
No 36
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=84.92 E-value=1.4 Score=54.35 Aligned_cols=87 Identities=23% Similarity=0.154 Sum_probs=55.7
Q ss_pred CceEEEEeccCccccEEEEecC-CceEEEEEecc--CCCCC-----CCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeE
Q 001049 7 EKLRFCIDRGGTFTDVYAEIPG-QLEGQVLKLLS--VDPTN-----YDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEW 78 (1173)
Q Consensus 7 ~~~rigIDvGGTfTD~v~~~~~-g~~~~~~K~~s--t~p~~-----~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~v~~ 78 (1173)
++|.+|||+|.|.+-++++|.+ ++++...+... ++|++ -.+...+.+..+++++..+ ..+++++|..
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~-----~~~~~~~I~a 77 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEE-----SKIDPDAIAA 77 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHh-----cccChhhceE
Confidence 5689999999999999999876 66455555432 11221 1244566666666665432 2356678888
Q ss_pred EEEehhHhhhHhhhcCCCcE
Q 001049 79 IRMGTTVATNALLERKGERI 98 (1173)
Q Consensus 79 i~hGTT~atNAllerkg~rv 98 (1173)
|..+|....=.+|-.+|..+
T Consensus 78 I~is~~~~g~vllD~~g~~L 97 (502)
T COG1070 78 IGISGQGHGLVLLDANGEPL 97 (502)
T ss_pred EEEeccccceEEECCCCCCc
Confidence 88887655555555555443
No 37
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=84.85 E-value=0.89 Score=56.13 Aligned_cols=74 Identities=11% Similarity=0.100 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCch--hhhHHHHHHHcCCCEEEECCCCCccchhcccccc
Q 001049 453 TVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAYGMGLAD 530 (1173)
Q Consensus 453 ~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaG--plha~~lA~~lGi~~VivP~~~~v~sA~G~~~ad 530 (1173)
+.++.+.++++=..-.+...++.+....|...+ .|++-||+. ++..-.+|+.+|.+ |.++..+. .+|+|+++.-
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~~~~--~i~~~GGga~s~~w~Qi~Adv~g~p-v~~~~~~e-~~a~GaA~la 446 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVMGDPLN--MIQATGGFASSEVWRQMMSDIFEQE-IVVPESYE-SSCLGACILG 446 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--EEEEecCcccCHHHHHHHHHHcCCe-eEecCCCC-cchHHHHHHH
Confidence 456666666665555555555555444465333 345555542 12223579999987 77777654 6788887653
No 38
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=84.30 E-value=1.4 Score=52.29 Aligned_cols=171 Identities=16% Similarity=0.131 Sum_probs=92.5
Q ss_pred ecccchhhHHHHHHhcccccCCCCEEEEecCCCceEEeeee--ceeeeeeeeEEccEEEeecceeeEEEeccCCcEEEEe
Q 001049 290 VLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA--GSYEQVLETQIAGAIIQAPQLDINTVAAGGGSNLMFQ 367 (1173)
Q Consensus 290 i~SGPa~Gv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~--G~~~~~~~~~i~g~~~~~p~~di~sIGaGGGSia~v~ 367 (1173)
+.|=-.+=..||.++. . . .--++||||=-+++-.++ |.+ .++-|=| .-.+|-||-.-.-
T Consensus 250 vitEItcHA~GA~~l~-P---~-vrTIIDIGGQDsK~I~ld~~G~V------------~dF~MND--KCAAGTGrFLE~m 310 (432)
T TIGR02259 250 IRSEILCHGLGAHLMY-P---G-TRTVLDIGGQDTKGIQIDDHGIV------------ENFQMND--RCAAGCGRYLGYI 310 (432)
T ss_pred eeeeHHHHHHHHHHHC-C---C-CCEEEEeCCCceEEEEEcCCCcE------------eeeeecC--cccccchHHHHHH
Confidence 4455666678888876 1 1 235699999999986663 544 2333433 3456777766543
Q ss_pred CCeEEECccccCCCCCcceeccCCccccchHHHHccccCCCCCCCcCCCCCCCCCCHHHHHHHH--HHHHHHHhhccccC
Q 001049 368 LGAFRVGPESVGAHPGPVCYRKGGDLAVTDANLILGFVIPDYFPSIFGPNEDQPLDINATREKF--QKLASEINSYRKSQ 445 (1173)
Q Consensus 368 ~G~l~VGP~SAGa~PGPacYg~GG~pTvTDA~lvLG~l~p~~fl~~~g~gG~~~Ld~~~a~~a~--~~ia~~lg~~~~~~ 445 (1173)
...|.+..+--+. |..-. -.|-.+- ..=. .| .++-..+.
T Consensus 311 A~~Lgi~leEl~~------lA~~a-------------~~pv~IS------S~Ct--------VFAESEVIslla------ 351 (432)
T TIGR02259 311 ADEMNMGLHELGP------LAMKS-------------SKPARIN------STCT--------VFAGAELRDRLA------ 351 (432)
T ss_pred HHHcCCCHHHHHH------HHhcC-------------CCCCCcC------Ccce--------EEehHHHHHHHH------
Confidence 3345444433221 00000 0011110 0000 11 12333443
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCchh--hhHHHHHHHcCC----CEEEECCCCC
Q 001049 446 DPSVKDMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGP--QHACAIARSLGM----REVLIHRFCG 519 (1173)
Q Consensus 446 ~~~~~gl~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaGp--lha~~lA~~lGi----~~VivP~~~~ 519 (1173)
.|.+.++.+.|+.+-...+.+.-++++- ..++- ++.-||-.- .....+.+.|+. .+|++|+++.
T Consensus 352 ----~G~~reDIaAGL~~SIA~Rv~s~l~r~~-----~i~~~-VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq 421 (432)
T TIGR02259 352 ----LGDKREDILAGLHRAIILRAISIISRSG-----GITDQ-FTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSI 421 (432)
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHHHHhccc-----CCCCC-EEEECCccccHHHHHHHHHHHccccCCCeEecCCCcc
Confidence 4689999999998866666555444331 22222 233344211 123456667752 4699999999
Q ss_pred ccchhcccc
Q 001049 520 ILSAYGMGL 528 (1173)
Q Consensus 520 v~sA~G~~~ 528 (1173)
...|+|+++
T Consensus 422 ~~GALGAAL 430 (432)
T TIGR02259 422 YTGALGASE 430 (432)
T ss_pred HHHHHHHHH
Confidence 999999986
No 39
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=83.43 E-value=1.1 Score=55.82 Aligned_cols=84 Identities=14% Similarity=0.100 Sum_probs=50.1
Q ss_pred EEEEeccCccccEEEEecCCceEEEEE--eccCCCC--C---CCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEEe
Q 001049 10 RFCIDRGGTFTDVYAEIPGQLEGQVLK--LLSVDPT--N---YDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRMG 82 (1173)
Q Consensus 10 rigIDvGGTfTD~v~~~~~g~~~~~~K--~~st~p~--~---~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~v~~i~hG 82 (1173)
.||||+|+|.|-++++|.+|+++...+ .++.+|. . -++.+.+++.++++++..+ .+++.++|..|-++
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~-----~~~~~~~I~~Igis 76 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAE-----SKVDPNSVKGIGFD 76 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHH-----cCCChhheEEEEec
Confidence 489999999999999987888544443 2221121 0 1223466666666655432 23445678888887
Q ss_pred hhHhhhHhhhcCCCcEE
Q 001049 83 TTVATNALLERKGERIA 99 (1173)
Q Consensus 83 TT~atNAllerkg~rvg 99 (1173)
++ .+=.++.++|..+.
T Consensus 77 ~~-~s~v~~D~~g~pl~ 92 (541)
T TIGR01315 77 AT-CSLVVLTHDGEPLP 92 (541)
T ss_pred cc-ccceEEcCCCCeee
Confidence 75 33344555555543
No 40
>PRK10331 L-fuculokinase; Provisional
Probab=83.37 E-value=1.3 Score=54.21 Aligned_cols=81 Identities=16% Similarity=0.118 Sum_probs=48.6
Q ss_pred eEEEEeccCccccEEEEecCCceEEEEEeccC----CCC-C-CC---ChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEE
Q 001049 9 LRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSV----DPT-N-YD---DAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWI 79 (1173)
Q Consensus 9 ~rigIDvGGTfTD~v~~~~~g~~~~~~K~~st----~p~-~-~~---~~~~~gi~~~l~~~~~~~~~~~~~~~~~~v~~i 79 (1173)
+.||||+|.|.+-++++|.+|+++...+.+.. .|. + .+ +.+.+.+.++++++..+ ....+|..|
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~-------~~~~~I~~I 75 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSE-------LTECHIRGI 75 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHh-------CCccceEEE
Confidence 78999999999999999888885555544321 111 0 01 22466666666665432 123457777
Q ss_pred EEehhHhhhHhhhcCCC
Q 001049 80 RMGTTVATNALLERKGE 96 (1173)
Q Consensus 80 ~hGTT~atNAllerkg~ 96 (1173)
.++++..+=.++-++|.
T Consensus 76 ~is~~~~~~v~~D~~G~ 92 (470)
T PRK10331 76 TVTTFGVDGALVDKQGN 92 (470)
T ss_pred EEeccccceEEECCCcC
Confidence 77665555444444443
No 41
>PRK13317 pantothenate kinase; Provisional
Probab=83.14 E-value=2.5 Score=48.37 Aligned_cols=75 Identities=19% Similarity=0.138 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCchhhh----HHHHHHHcC--CCEEEECCCCCccchh
Q 001049 451 DMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQH----ACAIARSLG--MREVLIHRFCGILSAY 524 (1173)
Q Consensus 451 gl~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaGplh----a~~lA~~lG--i~~VivP~~~~v~sA~ 524 (1173)
+.+.|+.|.+++..+..+.+......+...+.+ . +.|-|+|-.+ .-.+.+.+. =.++++|++++.+-|+
T Consensus 192 g~~~eDIaasl~~~v~~~I~~lA~~~ar~~~~~----~-Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAl 266 (277)
T PRK13317 192 EFTSSDILAGVIGLVGEVITTLSIQAAREKNIE----N-IVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAI 266 (277)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----e-EEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHH
Confidence 578999999999999888887666656555553 1 4555543222 224566662 2369999999999999
Q ss_pred cccccc
Q 001049 525 GMGLAD 530 (1173)
Q Consensus 525 G~~~ad 530 (1173)
|+++.-
T Consensus 267 GAaL~a 272 (277)
T PRK13317 267 GALLLA 272 (277)
T ss_pred HHHHHh
Confidence 999753
No 42
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=80.67 E-value=3.9 Score=50.04 Aligned_cols=81 Identities=14% Similarity=0.052 Sum_probs=50.8
Q ss_pred eEEEEeccCccccEEEEecCCceEEEEEeccC----CCCC-----CCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEE
Q 001049 9 LRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSV----DPTN-----YDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWI 79 (1173)
Q Consensus 9 ~rigIDvGGTfTD~v~~~~~g~~~~~~K~~st----~p~~-----~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~v~~i 79 (1173)
+.+|||+|.|.+-++++|.+|+++...+.+-. .|.+ -++.+.+++..+++++.. ++.+++|..|
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~-------~~~~~~I~aI 74 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINS-------ELTEKHIRGI 74 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHh-------hcChhceEEE
Confidence 57999999999999999888885545554311 1111 012357778888877642 1234568888
Q ss_pred EEehhHhhhHhhhcCCC
Q 001049 80 RMGTTVATNALLERKGE 96 (1173)
Q Consensus 80 ~hGTT~atNAllerkg~ 96 (1173)
...+...+..++-++|.
T Consensus 75 ~~s~~~~~~v~~D~~G~ 91 (465)
T TIGR02628 75 AVTTFGVDGAPFDKQGN 91 (465)
T ss_pred EEeccccceEEECCCCC
Confidence 88776555554444443
No 43
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=80.08 E-value=2 Score=53.55 Aligned_cols=74 Identities=14% Similarity=0.078 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCc---hhhhHHHHHHHcCCCEEEECCCCCccchhcccc
Q 001049 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGA---GPQHACAIARSLGMREVLIHRFCGILSAYGMGL 528 (1173)
Q Consensus 452 l~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGa---Gplha~~lA~~lGi~~VivP~~~~v~sA~G~~~ 528 (1173)
.+..+.+.+|++=..-+|...++.+-. .|.+++. |++-||+ -++..-.+|+.+|++ |.++... -.+|+|+++
T Consensus 405 ~~~~~~~RAvlEgia~~~~~~l~~l~~-~g~~~~~--i~~~GGg~a~s~~w~Qi~Adv~g~p-V~~~~~~-e~~a~GaA~ 479 (536)
T TIGR01234 405 TDAPLLYRALIEATAFGTRMIMETFTD-SGVPVEE--LMAAGGIARKNPVIMQIYADVTNRP-LQIVASD-QAPALGAAI 479 (536)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcce--EEEeCCccccCHHHHHHHHHhhCCe-eEeccCC-cchhHHHHH
Confidence 456778888886666677777777743 5776654 4444554 234445789999987 7777764 467899877
Q ss_pred cc
Q 001049 529 AD 530 (1173)
Q Consensus 529 ad 530 (1173)
.-
T Consensus 480 lA 481 (536)
T TIGR01234 480 FA 481 (536)
T ss_pred HH
Confidence 53
No 44
>PRK04123 ribulokinase; Provisional
Probab=79.16 E-value=2.3 Score=53.12 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCc---hhhhHHHHHHHcCCCEEEECCCCCccchhcccc
Q 001049 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGA---GPQHACAIARSLGMREVLIHRFCGILSAYGMGL 528 (1173)
Q Consensus 452 l~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGa---Gplha~~lA~~lGi~~VivP~~~~v~sA~G~~~ 528 (1173)
.+.++...+|++=..-++...++.+-. .|..++. |++.||+ -++..-.+|+.+|.+ |.++... -.+|+|+++
T Consensus 408 ~~~~~l~RAvlEgia~~~~~~~e~l~~-~g~~~~~--i~~~GGg~s~s~~w~Qi~ADv~g~p-V~~~~~~-e~~alGaA~ 482 (548)
T PRK04123 408 TDAPDIYRALIEATAFGTRAIMECFED-QGVPVEE--VIAAGGIARKNPVLMQIYADVLNRP-IQVVASD-QCPALGAAI 482 (548)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcce--EEEeCCCcccCHHHHHHHHHhcCCc-eEecCcc-ccchHHHHH
Confidence 355666666666555666666666643 5666554 5556665 466667899999988 6677654 366888776
Q ss_pred cc
Q 001049 529 AD 530 (1173)
Q Consensus 529 ad 530 (1173)
.-
T Consensus 483 lA 484 (548)
T PRK04123 483 FA 484 (548)
T ss_pred HH
Confidence 43
No 45
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=78.91 E-value=2.8 Score=48.47 Aligned_cols=179 Identities=15% Similarity=0.104 Sum_probs=107.9
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHhcCCCceEEEEEcCCCccccccccccceecccchhhHHHHHHhcccccCCCCEEEE
Q 001049 238 TASVDAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQTLFGLETEKPLIGF 317 (1173)
Q Consensus 238 TtvlNAyl~p~~~~yl~~l~~~L~~~~~~~~l~im~s~GG~~s~~~~~pv~ti~SGPa~Gv~Ga~~l~~~~~g~~~~I~~ 317 (1173)
+.++=|.-+-.+..|++.|+.+ |... -+|. ++.+.-.+++- .... +++.+ ...-.+.+|
T Consensus 140 ~Vll~AtrkE~v~~ri~a~~~A----Gl~~--~vlD-------V~~fAl~ra~~------~~~~-~~~~~-~a~~~vav~ 198 (354)
T COG4972 140 QVLLVATRKEVVESRIDAFELA----GLEP--KVLD-------VESFALLRAYR------LLAS-QFGPE-EAAMKVAVF 198 (354)
T ss_pred EEEEEEeehhhhHHHHHHHHHc----CCCc--eEEe-------hHHHHHHHHHH------HHHH-HhCCc-hhhhhheee
Confidence 3455677788888888877654 4433 2332 33322122210 1111 11111 112235789
Q ss_pred ecCCCceEEeeee-ceeeeeeeeEEccEEEeecceeeEEEeccCCcEEEEeCCeEEECccccCCCCCcceeccCCccccc
Q 001049 318 DMGGTSTDVSRYA-GSYEQVLETQIAGAIIQAPQLDINTVAAGGGSNLMFQLGAFRVGPESVGAHPGPVCYRKGGDLAVT 396 (1173)
Q Consensus 318 DmGGTStDv~li~-G~~~~~~~~~i~g~~~~~p~~di~sIGaGGGSia~v~~G~l~VGP~SAGa~PGPacYg~GG~pTvT 396 (1173)
|||.|+|-++++. |++.++++..++++.+ |
T Consensus 199 ~Igat~s~l~vi~~gk~ly~r~~~~g~~Ql-------------------------------------------------t 229 (354)
T COG4972 199 DIGATSSELLVIQDGKILYTREVPVGTDQL-------------------------------------------------T 229 (354)
T ss_pred eecccceEEEEEECCeeeeEeeccCcHHHH-------------------------------------------------H
Confidence 9999999999996 9998877654433221 1
Q ss_pred hHHHHccccCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHHhhccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001049 397 DANLILGFVIPDYFPSIFGPNEDQPLDINATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGFVNVANETMCRPIRQL 476 (1173)
Q Consensus 397 DA~lvLG~l~p~~fl~~~g~gG~~~Ld~~~a~~a~~~ia~~lg~~~~~~~~~~~gl~~eeaA~gi~~ia~~~Ma~air~~ 476 (1173)
++- .-.+.||.++|..+.+..+.|- =-..++..-++.-....+.+.|.-.
T Consensus 230 ~~i-----------------~r~~~L~~~~a~~~k~~~~~P~-------------~y~~~vl~~f~~~l~~ei~Rslqfy 279 (354)
T COG4972 230 QEI-----------------QRAYSLTEEKAEEIKRGGTLPT-------------DYGSEVLRPFLGELTQEIRRSLQFY 279 (354)
T ss_pred HHH-----------------HHHhCCChhHhHHHHhCCCCCC-------------chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 0124577777766654211111 0136777888888888888999888
Q ss_pred HHHhCCCCCCceEEEEcCchhh-hHHHHHHHcCCCEEEECC
Q 001049 477 TEMKGHETRNHALACFGGAGPQ-HACAIARSLGMREVLIHR 516 (1173)
Q Consensus 477 ~~~rG~dprdf~LvafGGaGpl-ha~~lA~~lGi~~VivP~ 516 (1173)
....+..-=|..+++.|||+=. .+..+.+.|+++..++-|
T Consensus 280 ~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t~vanP 320 (354)
T COG4972 280 LSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPTEVANP 320 (354)
T ss_pred HhccccceeeEEEEecCCcchhhHHHHHHHHhCCCeEeeCH
Confidence 8888887778887777776532 235788999999888766
No 46
>PRK13317 pantothenate kinase; Provisional
Probab=78.17 E-value=2 Score=49.05 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=22.7
Q ss_pred CceEEEEeccCccccEEEEecCCceEEEEEe
Q 001049 7 EKLRFCIDRGGTFTDVYAEIPGQLEGQVLKL 37 (1173)
Q Consensus 7 ~~~rigIDvGGTfTD~v~~~~~g~~~~~~K~ 37 (1173)
|+++||||+|||.|-+|++|++++ ...|.
T Consensus 1 m~~~iGIDiGstt~K~v~~~~~~~--~~~~~ 29 (277)
T PRK13317 1 MEMKIGIDAGGTLTKIVYLEEKKQ--RTFKT 29 (277)
T ss_pred CCceEEEEeCcccEEEEEEcCCCe--EEEEe
Confidence 358999999999999999976554 34554
No 47
>PLN02295 glycerol kinase
Probab=77.63 E-value=2.3 Score=52.67 Aligned_cols=73 Identities=16% Similarity=0.015 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCCCceEEEEcCch--hhhHHHHHHHcCCCEEEECCCCCccchh
Q 001049 452 MTVEDIALGFVNVANETMCRPIRQLTEM-----KGHETRNHALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAY 524 (1173)
Q Consensus 452 l~~eeaA~gi~~ia~~~Ma~air~~~~~-----rG~dprdf~LvafGGaG--plha~~lA~~lGi~~VivP~~~~v~sA~ 524 (1173)
.+.++.+.++++=..-++...++.+-.. .|..++. |.+-||+. ++..-.+|+.+|.+ |++|... -.+|+
T Consensus 376 ~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~--i~~~GGga~s~~w~Qi~ADv~g~p-V~~~~~~-e~~al 451 (512)
T PLN02295 376 TNKAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFL--LRVDGGATANNLLMQIQADLLGSP-VVRPADI-ETTAL 451 (512)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcce--EEEeccchhCHHHHHHHHHhcCCc-eEecCcc-ccHHH
Confidence 4567777777776666776666666433 1334443 44444432 23334679999998 6777754 46789
Q ss_pred cccc
Q 001049 525 GMGL 528 (1173)
Q Consensus 525 G~~~ 528 (1173)
|+++
T Consensus 452 GaA~ 455 (512)
T PLN02295 452 GAAY 455 (512)
T ss_pred HHHH
Confidence 9876
No 48
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=77.04 E-value=4.9 Score=49.69 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCch--hhhHHHHHHHcCCCEEEECCCCCccchhccccc
Q 001049 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1173)
Q Consensus 452 l~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaG--plha~~lA~~lGi~~VivP~~~~v~sA~G~~~a 529 (1173)
.+..+.+.+|++=..-++...++.+....|..++. |.+.||+. ++..-.+|+.+|.+ |.++.... .+|+|+++.
T Consensus 375 ~~~~~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~--i~~~GG~a~s~~w~Qi~Adv~g~p-V~~~~~~e-~~alGaAl~ 450 (504)
T PTZ00294 375 TTRAHIVRAALEAIALQTNDVIESMEKDAGIELNS--LRVDGGLTKNKLLMQFQADILGKD-IVVPEMAE-TTALGAALL 450 (504)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcce--EEEecccccCHHHHHHHHHHhCCc-eEecCccc-chHHHHHHH
Confidence 45677777777766667777776665545765443 34444432 12223678999998 77777655 589998775
Q ss_pred c
Q 001049 530 D 530 (1173)
Q Consensus 530 d 530 (1173)
-
T Consensus 451 a 451 (504)
T PTZ00294 451 A 451 (504)
T ss_pred H
Confidence 3
No 49
>PLN02669 xylulokinase
Probab=76.39 E-value=8.5 Score=48.34 Aligned_cols=79 Identities=15% Similarity=-0.016 Sum_probs=53.3
Q ss_pred CCCCCCCceEEEEeccCccccEEEEecCCceEEEEEeccC--CCC---------CCCC---------hHHHHHHHHHHHh
Q 001049 1 MGSVKEEKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSV--DPT---------NYDD---------APVEGIRRILEEY 60 (1173)
Q Consensus 1 ~~~~~~~~~rigIDvGGTfTD~v~~~~~g~~~~~~K~~st--~p~---------~~~~---------~~~~gi~~~l~~~ 60 (1173)
+.|+-...+.||||+|.|.+-++++|.+|+++..+++... .|+ |+.+ -.++++..+++++
T Consensus 1 ~~~~~~~~~~LGiD~GT~s~Ka~l~d~~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l 80 (556)
T PLN02669 1 DLSLPEDSLFLGFDSSTQSLKATVLDSNLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKL 80 (556)
T ss_pred CCCCCCCCeEEEEecccCCeEEEEEcCCCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHH
Confidence 3567778899999999999999999988886677776421 011 2221 3458888888876
Q ss_pred hCCCCCCCCCCCCCCeeEEEEehhH
Q 001049 61 TGEKIPRTSKIPTDKIEWIRMGTTV 85 (1173)
Q Consensus 61 ~~~~~~~~~~~~~~~v~~i~hGTT~ 85 (1173)
.. .+.++++|..|..++.+
T Consensus 81 ~~------~~~~~~~I~aIs~s~Q~ 99 (556)
T PLN02669 81 AK------EKFPFHKVVAISGSGQQ 99 (556)
T ss_pred HH------cCCChhhEEEEEecCCc
Confidence 42 23455677777655543
No 50
>PRK09557 fructokinase; Reviewed
Probab=76.37 E-value=4.4 Score=46.42 Aligned_cols=49 Identities=27% Similarity=0.280 Sum_probs=32.3
Q ss_pred eEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHH
Q 001049 9 LRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEE 59 (1173)
Q Consensus 9 ~rigIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~~~~~~~~~gi~~~l~~ 59 (1173)
|+||||+|||++-++++|.+|+++...+.++ |....+.+++-|.+.+++
T Consensus 1 ~~lgidig~t~~~~~l~d~~g~i~~~~~~~~--~~~~~~~~~~~i~~~i~~ 49 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDDAGEELFRKRLPT--PRDDYQQTIEAIATLVDM 49 (301)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecC--CCCCHHHHHHHHHHHHHH
Confidence 5799999999999999986777444555543 322234455555555544
No 51
>PRK15027 xylulokinase; Provisional
Probab=76.24 E-value=4.3 Score=49.90 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCch--hhhHHHHHHHcCCCEEEECCCCCccchhccccc
Q 001049 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1173)
Q Consensus 452 l~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaG--plha~~lA~~lGi~~VivP~~~~v~sA~G~~~a 529 (1173)
.+..+.+.++++=..-++...++.+- +.|..++. +++-||+. ++..-.+|+.+|.+ |.++......+|+|+++.
T Consensus 356 ~~~~~l~rAvlEgia~~~~~~~~~l~-~~g~~~~~--i~~~GGga~s~~w~Qi~Adv~g~p-v~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 356 HGPNELARAVLEGVGYALADGMDVVH-ACGIKPQS--VTLIGGGARSEYWRQMLADISGQQ-LDYRTGGDVGPALGAARL 431 (484)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCccE--EEEeCcccCCHHHHHHHHHHhCCe-EEeecCCCcchHHHHHHH
Confidence 45677777777666666777776664 34664443 55556631 22234679999998 556655555679998765
Q ss_pred c
Q 001049 530 D 530 (1173)
Q Consensus 530 d 530 (1173)
-
T Consensus 432 A 432 (484)
T PRK15027 432 A 432 (484)
T ss_pred H
Confidence 3
No 52
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=75.86 E-value=4.5 Score=45.33 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=33.3
Q ss_pred eEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHH
Q 001049 9 LRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEE 59 (1173)
Q Consensus 9 ~rigIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~~~~~~~~~gi~~~l~~ 59 (1173)
|.+|||+|||++-+.++|.+|+++...|.++ |......+++.+.+.+++
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~i~~~~~~~~--~~~~~~~~~~~i~~~i~~ 49 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQRIWHKRVPT--PREDYPQLLQILRDLTEE 49 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecC--CCcCHHHHHHHHHHHHHH
Confidence 4699999999999999987777455555543 333234466666666554
No 53
>PRK09698 D-allose kinase; Provisional
Probab=72.95 E-value=7.3 Score=44.57 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=33.2
Q ss_pred CCceEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHH
Q 001049 6 EEKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEE 59 (1173)
Q Consensus 6 ~~~~rigIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~~~~~~~~~gi~~~l~~ 59 (1173)
++.+.+|||+|||++.++++|.+|+++...+.++. +...++ .++-+...+++
T Consensus 2 ~~~~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~-~~~~~~-~~~~l~~~i~~ 53 (302)
T PRK09698 2 QKNVVLGIDMGGTHIRFCLVDAEGEILHCEKKRTA-EVIAPD-LVSGLGEMIDE 53 (302)
T ss_pred CccEEEEEEcCCcEEEEEEEcCCCCEEEEEEeCCc-cccchH-HHHHHHHHHHH
Confidence 45688999999999999999877884444555432 222222 24444444444
No 54
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=72.63 E-value=3.8 Score=48.17 Aligned_cols=36 Identities=31% Similarity=0.521 Sum_probs=25.3
Q ss_pred ccchhhHHHHHHhcccccCCCCEEEEecCCCceEEeee
Q 001049 292 SGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRY 329 (1173)
Q Consensus 292 SGPa~Gv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li 329 (1173)
--|++..++.-. - ...|.+|+++||.||-|||||++
T Consensus 207 NePTaAAIAYGL-D-Kk~gEknilVfDLGGGTFDVSlL 242 (663)
T KOG0100|consen 207 NEPTAAAIAYGL-D-KKDGEKNILVFDLGGGTFDVSLL 242 (663)
T ss_pred cCccHHHHHhcc-c-ccCCcceEEEEEcCCceEEEEEE
Confidence 346554443221 1 23578999999999999999987
No 55
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=72.56 E-value=7.3 Score=49.70 Aligned_cols=48 Identities=21% Similarity=0.137 Sum_probs=33.3
Q ss_pred CceEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHH
Q 001049 7 EKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILE 58 (1173)
Q Consensus 7 ~~~rigIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~~~~~~~~~gi~~~l~ 58 (1173)
..|.+|||+|||++-+.++|++|+++...|.+|. ..+.+.+.|...++
T Consensus 17 ~~~~L~iDIGGT~ir~al~~~~g~i~~~~~~~t~----~~~~~~~~i~~~l~ 64 (638)
T PRK14101 17 DGPRLLADVGGTNARFALETGPGEITQIRVYPGA----DYPTLTDAIRKYLK 64 (638)
T ss_pred CCCEEEEEcCchhheeeeecCCCcccceeEEecC----CCCCHHHHHHHHHH
Confidence 3579999999999999999767774455566542 12456666655554
No 56
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=70.30 E-value=4.3 Score=46.47 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCchhhhH-----HHHHHH--cCCCEEEECCCCCccch
Q 001049 451 DMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQHA-----CAIARS--LGMREVLIHRFCGILSA 523 (1173)
Q Consensus 451 gl~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaGplha-----~~lA~~--lGi~~VivP~~~~v~sA 523 (1173)
+.+.|+.|.+++..+..|+...-...+...+... +.|.|+ |++- -.+.+. +--.++++|+|++.+-|
T Consensus 200 ~~~~eDiAaSLl~mV~~nIg~lA~~~a~~~~~~~-----IvF~Gg-~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gA 273 (279)
T TIGR00555 200 SFSPEDIAASLLGLIGNNIGQIAYLCALRYNIDR-----IVFIGS-FLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGA 273 (279)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe-----EEEECC-cccCCHHHHHHHHHHHhhcCceEEEECCcchHHH
Confidence 4789999999999999999888887777666553 667764 3332 223333 32356899999999999
Q ss_pred hccccc
Q 001049 524 YGMGLA 529 (1173)
Q Consensus 524 ~G~~~a 529 (1173)
+|++++
T Consensus 274 lGAaL~ 279 (279)
T TIGR00555 274 IGALLS 279 (279)
T ss_pred hhhccC
Confidence 999874
No 57
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=69.61 E-value=7.4 Score=44.61 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=32.7
Q ss_pred eEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHH
Q 001049 9 LRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEE 59 (1173)
Q Consensus 9 ~rigIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~~~~~~~~~gi~~~l~~ 59 (1173)
|.+|||+|||++-++++|.+|+++...+.++ |.+..+.+++.|.+.+++
T Consensus 1 ~~lgidig~t~i~~~l~d~~g~i~~~~~~~~--~~~~~~~~~~~i~~~i~~ 49 (303)
T PRK13310 1 MYYGFDIGGTKIELGVFNEKLELQWEERVPT--PRDSYDAFLDAVCELVAE 49 (303)
T ss_pred CeEEEEeCCCcEEEEEECCCCcEEEEEEecC--CCcCHHHHHHHHHHHHHH
Confidence 3599999999999999987777444455543 333344555555555544
No 58
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=68.76 E-value=12 Score=44.87 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=11.5
Q ss_pred CEEEEecCCCceEEeeee
Q 001049 313 PLIGFDMGGTSTDVSRYA 330 (1173)
Q Consensus 313 ~~I~~DmGGTStDv~li~ 330 (1173)
-.+.+|+|+|||++.+++
T Consensus 145 ~~lGIDiGSTttK~Vl~d 162 (404)
T TIGR03286 145 LTLGIDSGSTTTKAVVME 162 (404)
T ss_pred EEEEEEcChhheeeEEEc
Confidence 356666666666666664
No 59
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=68.36 E-value=6.9 Score=45.08 Aligned_cols=28 Identities=11% Similarity=-0.099 Sum_probs=21.5
Q ss_pred ceEEEEeccCccccEEEEecCCceEEEEEe
Q 001049 8 KLRFCIDRGGTFTDVYAEIPGQLEGQVLKL 37 (1173)
Q Consensus 8 ~~rigIDvGGTfTD~v~~~~~g~~~~~~K~ 37 (1173)
++.+|||+|.|.|.+|++| +++ +.....
T Consensus 32 m~~~GIDiGStt~K~Vlld-~~~-i~~~~~ 59 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVC-DGE-LYGYNS 59 (293)
T ss_pred cEEEEEEeCchhEEEEEEe-CCE-EEEEEe
Confidence 5889999999999999997 456 443444
No 60
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=65.76 E-value=47 Score=38.80 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.5
Q ss_pred CEEEEecCCCceEEeeee-ceeeee
Q 001049 313 PLIGFDMGGTSTDVSRYA-GSYEQV 336 (1173)
Q Consensus 313 ~~I~~DmGGTStDv~li~-G~~~~~ 336 (1173)
+++.+|||+.||+++++. |.+...
T Consensus 189 ~~~lvdiG~~~t~l~i~~~g~~~~~ 213 (348)
T TIGR01175 189 DAALVDIGATSSTLNLLHPGRMLFT 213 (348)
T ss_pred eEEEEEECCCcEEEEEEECCeEEEE
Confidence 499999999999999996 877543
No 61
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=65.39 E-value=6 Score=46.22 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhCCCC----CCceEEEEcCchhhh--HHHHHHHcCCCEEEECCCCCccchhccccc
Q 001049 466 NETMCRPIRQLTEMKGHET----RNHALACFGGAGPQH--ACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1173)
Q Consensus 466 ~~~Ma~air~~~~~rG~dp----rdf~LvafGGaGplh--a~~lA~~lGi~~VivP~~~~v~sA~G~~~a 529 (1173)
.+.+.+.|+......+.+. -+..++..||+.-+- .-.+.+.++++ |.+..+|-...|.|+++.
T Consensus 252 ~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~-v~~~~~P~~ava~Gaa~~ 320 (336)
T PRK13928 252 VSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVP-VYIAEDPISCVALGTGKM 320 (336)
T ss_pred HHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCC-ceecCCHHHHHHHHHHHH
Confidence 3456666666665554221 122356667765433 34677788987 778889999999999876
No 62
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=63.97 E-value=26 Score=40.22 Aligned_cols=29 Identities=31% Similarity=0.360 Sum_probs=25.2
Q ss_pred EEEEeccCccccEEEEecCCceEEEEEecc
Q 001049 10 RFCIDRGGTFTDVYAEIPGQLEGQVLKLLS 39 (1173)
Q Consensus 10 rigIDvGGTfTD~v~~~~~g~~~~~~K~~s 39 (1173)
+||||+|||.|-+|..+++++ +...|.+|
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~-~~f~~~~~ 30 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGR-RKFKTFET 30 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCc-EEEEEeec
Confidence 699999999999999977778 77778765
No 63
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=63.65 E-value=13 Score=43.64 Aligned_cols=60 Identities=17% Similarity=0.041 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCCC--Cc--eEEEEcCchhhh--HHHHHHHcCCCEEEECCCCCccchhccccc
Q 001049 469 MCRPIRQLTEMKGHETR--NH--ALACFGGAGPQH--ACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1173)
Q Consensus 469 Ma~air~~~~~rG~dpr--df--~LvafGGaGplh--a~~lA~~lGi~~VivP~~~~v~sA~G~~~a 529 (1173)
+.+.|+....+.+.+.+ .+ .++.-||+.-+- .-.+.+++|++ |.+..+|--.-|.|++..
T Consensus 258 i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~-v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 258 ILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVP-VHVAANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCC-ceeCCCHHHHHHHHHHHH
Confidence 44445555444443332 11 245556653222 23577788987 667778888888887765
No 64
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=63.21 E-value=5.8 Score=50.07 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEEcCch---hhhHHHHHHHcCCCEEEECCCCCccchhcccc
Q 001049 468 TMCRPIRQLTEMKGHETRNHALACFGGAG---PQHACAIARSLGMREVLIHRFCGILSAYGMGL 528 (1173)
Q Consensus 468 ~Ma~air~~~~~rG~dprdf~LvafGGaG---plha~~lA~~lGi~~VivP~~~~v~sA~G~~~ 528 (1173)
.....++......|+++.+...+..-|+. |+.--.+++..| +....-.+|.-.-|+|+++
T Consensus 291 r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa~ 353 (579)
T COG0443 291 RTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAAI 353 (579)
T ss_pred HHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHHH
Confidence 34455556777788888887766665553 222234566667 4455555666677777654
No 65
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=62.75 E-value=15 Score=42.27 Aligned_cols=37 Identities=11% Similarity=0.093 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCch
Q 001049 455 EDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAG 496 (1173)
Q Consensus 455 eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaG 496 (1173)
++.|..+++-+...++.+|..+.. -+||.. +.+||.-
T Consensus 225 D~~a~~i~~~~~~~L~~~i~~~~~--~~dP~~---IvlgG~~ 261 (318)
T TIGR00744 225 DPVAVDSYREVARWAGAGLADLAS--LFNPSA---IVLGGGL 261 (318)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH--HhCCCE---EEECChh
Confidence 367888999899999999988876 468853 4556653
No 66
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=62.75 E-value=18 Score=42.40 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhc-CCCceEEEEEcCCCccccccc------c--cc--ceecccchhhHHHHHH-hcccccCCCCEEE
Q 001049 249 IKEYLSGFMSKFDEG-LAKVNVLFMQSDGGLAPESRF------S--GH--KAVLSGPAGGVVGYSQ-TLFGLETEKPLIG 316 (1173)
Q Consensus 249 ~~~yl~~l~~~L~~~-~~~~~l~im~s~GG~~s~~~~------~--pv--~ti~SGPa~Gv~Ga~~-l~~~~~g~~~~I~ 316 (1173)
++.+|..|-+..... .+..|-.++.---++..+++- . .. -.+.+=|.+..+|+-. +. .....++
T Consensus 74 ~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl~i~----~~~g~mi 149 (326)
T PF06723_consen 74 AEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGLDIF----EPRGSMI 149 (326)
T ss_dssp HHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TT----SSS-EEE
T ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCCCCC----CCCceEE
Confidence 455565555555542 345677777777777776651 0 01 1355667777777632 22 2345899
Q ss_pred EecCCCceEEeeee-ceeeeee
Q 001049 317 FDMGGTSTDVSRYA-GSYEQVL 337 (1173)
Q Consensus 317 ~DmGGTStDv~li~-G~~~~~~ 337 (1173)
+||||-|||||+|. |....+.
T Consensus 150 VDIG~GtTdiavislggiv~s~ 171 (326)
T PF06723_consen 150 VDIGGGTTDIAVISLGGIVASR 171 (326)
T ss_dssp EEE-SS-EEEEEEETTEEEEEE
T ss_pred EEECCCeEEEEEEECCCEEEEE
Confidence 99999999999996 7664443
No 67
>PRK00292 glk glucokinase; Provisional
Probab=61.69 E-value=16 Score=42.16 Aligned_cols=47 Identities=19% Similarity=0.080 Sum_probs=29.6
Q ss_pred ceEEEEeccCccccEEEEe-cCCceEEEEEeccCCCCCCCChHHHHHHHHHH
Q 001049 8 KLRFCIDRGGTFTDVYAEI-PGQLEGQVLKLLSVDPTNYDDAPVEGIRRILE 58 (1173)
Q Consensus 8 ~~rigIDvGGTfTD~v~~~-~~g~~~~~~K~~st~p~~~~~~~~~gi~~~l~ 58 (1173)
++.|+||+|||++-+.++| .+++++...|.++ + + .+.+.+.+.+.++
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~--~-~-~~~~~~~l~~~l~ 49 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWANGEIEQIKTYAT--A-D-YPSLEDAIRAYLA 49 (316)
T ss_pred ceEEEEEcCccceEEEEEecCCCceeeeEEEec--C-C-CCCHHHHHHHHHH
Confidence 3679999999999999997 4554334445543 2 1 2345555555443
No 68
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=61.35 E-value=12 Score=45.78 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCchh--hhHHHHHHHcCCCEEEECCCCCccchhccccc
Q 001049 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGP--QHACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1173)
Q Consensus 452 l~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaGp--lha~~lA~~lGi~~VivP~~~~v~sA~G~~~a 529 (1173)
.+.++.+.++++=..-++..-++.+...-|..++ .+++.||+.- +..-.+|+.+|.+ |.++.. .-.+|+|+++.
T Consensus 359 ~~~~~l~railEgia~~~~~~~~~l~~~~~~~~~--~i~~~GG~s~s~~~~Q~~Adv~g~p-v~~~~~-~e~~a~GaA~~ 434 (481)
T TIGR01312 359 TTRADLTRAVLEGVTFALRDSLDILREAGGIPIQ--SIRLIGGGAKSPAWRQMLADIFGTP-VDVPEG-EEGPALGAAIL 434 (481)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--eEEEeccccCCHHHHHHHHHHhCCc-eeecCC-CcchHHHHHHH
Confidence 3466666666665556666666555432345433 3555666532 2223679999987 777774 44778998765
Q ss_pred c
Q 001049 530 D 530 (1173)
Q Consensus 530 d 530 (1173)
-
T Consensus 435 a 435 (481)
T TIGR01312 435 A 435 (481)
T ss_pred H
Confidence 4
No 69
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=61.30 E-value=9.1 Score=49.06 Aligned_cols=42 Identities=26% Similarity=0.457 Sum_probs=28.2
Q ss_pred ceecccchhhHHHHHHhcccccCCCCEEEEecCCCceEEeeee
Q 001049 288 KAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA 330 (1173)
Q Consensus 288 ~ti~SGPa~Gv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~ 330 (1173)
..+.+-|+|..++..... .....++++++|+||.|||||++.
T Consensus 171 ~~li~EptAAAl~y~~~~-~~~~~~~vlv~D~GggT~dvsv~~ 212 (653)
T PTZ00009 171 LRIINEPTAAAIAYGLDK-KGDGEKNVLIFDLGGGTFDVSLLT 212 (653)
T ss_pred eEEecchHHHHHHHhhhc-cCCCCCEEEEEECCCCeEEEEEEE
Confidence 345677777655543321 111346799999999999999984
No 70
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=58.90 E-value=9.4 Score=48.94 Aligned_cols=39 Identities=21% Similarity=0.451 Sum_probs=26.9
Q ss_pred eecccchhhHHHHHHhcccccCCCCEEEEecCCCceEEeeee
Q 001049 289 AVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA 330 (1173)
Q Consensus 289 ti~SGPa~Gv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~ 330 (1173)
-+..-|.|..++... .....+.+++||+||.|||||++.
T Consensus 192 rlInEPtAAAlayg~---~~~~~~~vlV~DlGGGT~DvSil~ 230 (657)
T PTZ00186 192 RVVNEPTAAALAYGM---DKTKDSLIAVYDLGGGTFDISVLE 230 (657)
T ss_pred EEEcChHHHHHHHhc---cCCCCCEEEEEECCCCeEEEEEEE
Confidence 456677666554322 112346799999999999999984
No 71
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=57.32 E-value=26 Score=41.55 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=19.7
Q ss_pred CCEEEEecCCCceEEeeee-ceee
Q 001049 312 KPLIGFDMGGTSTDVSRYA-GSYE 334 (1173)
Q Consensus 312 ~~~I~~DmGGTStDv~li~-G~~~ 334 (1173)
..++++||||.|||++++. |.+.
T Consensus 196 ~~~~vvDiG~gtt~i~i~~~g~~~ 219 (371)
T TIGR01174 196 LGVCLIDIGGGTTDIAVYTGGSIR 219 (371)
T ss_pred CCEEEEEeCCCcEEEEEEECCEEE
Confidence 4699999999999999996 6654
No 72
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=57.05 E-value=45 Score=39.35 Aligned_cols=38 Identities=11% Similarity=0.019 Sum_probs=29.3
Q ss_pred EEEEcCchhhhHHHHHHHcCCCEEEECCCCCccchhcccc
Q 001049 489 LACFGGAGPQHACAIARSLGMREVLIHRFCGILSAYGMGL 528 (1173)
Q Consensus 489 LvafGGaGplha~~lA~~lGi~~VivP~~~~v~sA~G~~~ 528 (1173)
++..||++.++...|-+.++ ++.+++.|--+||-|+..
T Consensus 295 IiL~GGGA~ll~~~lk~~f~--~~~~~~~p~~ANa~G~~~ 332 (344)
T PRK13917 295 VIVTGGGANIFFDSLSHWYS--DVEKADESQFANVRGYYK 332 (344)
T ss_pred EEEECCcHHHHHHHHHHHcC--CeEEcCChHHHHHHHHHH
Confidence 66778887777777777765 567888899999988754
No 73
>PRK11678 putative chaperone; Provisional
Probab=56.29 E-value=11 Score=45.99 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=29.1
Q ss_pred cceecccchhhHHHHHHhcccccCCCCEEEEecCCCceEEeeee
Q 001049 287 HKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA 330 (1173)
Q Consensus 287 v~ti~SGPa~Gv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~ 330 (1173)
+..+..-|.|..++... .....+.++++|+||.|||+|++.
T Consensus 187 ~v~li~EPtAAAl~y~~---~~~~~~~vlV~D~GGGT~D~Svv~ 227 (450)
T PRK11678 187 DVEFQFEPVAAGLDFEA---TLTEEKRVLVVDIGGGTTDCSMLL 227 (450)
T ss_pred EEEEEcCHHHHHHHhcc---ccCCCCeEEEEEeCCCeEEEEEEE
Confidence 44566788776665432 112346799999999999999995
No 74
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=54.45 E-value=11 Score=43.88 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=30.0
Q ss_pred EEEEcCchhhh--HHHHHHHcCCCEEEECCCCCccchhccccc
Q 001049 489 LACFGGAGPQH--ACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1173)
Q Consensus 489 LvafGGaGplh--a~~lA~~lGi~~VivP~~~~v~sA~G~~~a 529 (1173)
++..||+.-+- .-.+.++++++ |.++.+|-..-|.|++..
T Consensus 280 IvL~GG~s~ipgl~~~l~~~~~~~-v~~~~~P~~ava~Ga~~~ 321 (334)
T PRK13927 280 IVLTGGGALLRGLDKLLSEETGLP-VHVAEDPLTCVARGTGKA 321 (334)
T ss_pred EEEECchhhhhHHHHHHHHHHCCC-cEecCCHHHHHHHHHHHH
Confidence 66777776544 34677788987 788888888889998876
No 75
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=54.07 E-value=13 Score=47.35 Aligned_cols=39 Identities=21% Similarity=0.506 Sum_probs=27.5
Q ss_pred eecccchhhHHHHHHhcccccCCCCEEEEecCCCceEEeeee
Q 001049 289 AVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA 330 (1173)
Q Consensus 289 ti~SGPa~Gv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~ 330 (1173)
.+.+-|.|..++...- ....+.++++|+||.|||||++.
T Consensus 165 ~li~EptAAAl~y~~~---~~~~~~vlV~D~GggT~dvsv~~ 203 (627)
T PRK00290 165 RIINEPTAAALAYGLD---KKGDEKILVYDLGGGTFDVSILE 203 (627)
T ss_pred EEecchHHHHHHhhhc---cCCCCEEEEEECCCCeEEEEEEE
Confidence 4567777765543321 12346799999999999999985
No 76
>PLN03184 chloroplast Hsp70; Provisional
Probab=53.44 E-value=13 Score=47.73 Aligned_cols=39 Identities=23% Similarity=0.520 Sum_probs=26.6
Q ss_pred eecccchhhHHHHHHhcccccCCCCEEEEecCCCceEEeeee
Q 001049 289 AVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA 330 (1173)
Q Consensus 289 ti~SGPa~Gv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~ 330 (1173)
.+.+-|.|..++...- ....+.++++|+||.|||||++.
T Consensus 204 ~li~EPtAAAlayg~~---~~~~~~vlV~DlGgGT~DvSi~~ 242 (673)
T PLN03184 204 RIINEPTAASLAYGFE---KKSNETILVFDLGGGTFDVSVLE 242 (673)
T ss_pred EEeCcHHHHHHHhhcc---cCCCCEEEEEECCCCeEEEEEEE
Confidence 3556676655543321 12345799999999999999984
No 77
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=53.15 E-value=52 Score=33.68 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCchhhhHHHHHHHcCCCEEEECCCCCccchhcccccc
Q 001049 451 DMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQHACAIARSLGMREVLIHRFCGILSAYGMGLAD 530 (1173)
Q Consensus 451 gl~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaGplha~~lA~~lGi~~VivP~~~~v~sA~G~~~ad 530 (1173)
|.++.+++.-+-.+...-+.++++....+.|-.|..|+++++|+.|-- |. .| .+|
T Consensus 14 g~~~~~i~~~~s~~~d~l~~r~~~la~~~~~~pp~~~a~lalGS~GR~-------E~------~~------------~sD 68 (138)
T PF03445_consen 14 GASVRQIARILSELNDALIRRLIELAEAEMGPPPVPFAWLALGSYGRR-------EQ------TL------------YSD 68 (138)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEECccccc-------CC------Cc------------Ccc
Confidence 578888876666666666778888888888889999999999998531 11 11 111
Q ss_pred eeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 001049 531 VVEEAQEPYSAVYGPESVLEVSRREGILSKQVKQKLQEQGFRE 573 (1173)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~l~~~G~~~ 573 (1173)
+ +--+ .+.+...+...+-|..+.++....|.+-|++.
T Consensus 69 q----D~al--v~~d~~~~~~~~~f~~~a~~~~~~L~~~G~~~ 105 (138)
T PF03445_consen 69 Q----DNAL--VFEDEESEEDRAYFEAFAERLVDALDECGFPP 105 (138)
T ss_pred c----ccee--eecCccchhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 1 1111 11112234567889999999999999999975
No 78
>CHL00094 dnaK heat shock protein 70
Probab=52.67 E-value=13 Score=47.40 Aligned_cols=39 Identities=23% Similarity=0.517 Sum_probs=26.1
Q ss_pred eecccchhhHHHHHHhcccccCCCCEEEEecCCCceEEeeee
Q 001049 289 AVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA 330 (1173)
Q Consensus 289 ti~SGPa~Gv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~ 330 (1173)
-+.+-|.|..++...- ....+.++++|+||.|||||++.
T Consensus 167 ~li~EptAAAlay~~~---~~~~~~vlV~DlGgGT~DvSv~~ 205 (621)
T CHL00094 167 RIINEPTAASLAYGLD---KKNNETILVFDLGGGTFDVSILE 205 (621)
T ss_pred EEeccHHHHHHHhccc---cCCCCEEEEEEcCCCeEEEEEEE
Confidence 3456676655543221 12345799999999999999985
No 79
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=52.51 E-value=15 Score=46.60 Aligned_cols=41 Identities=20% Similarity=0.350 Sum_probs=26.9
Q ss_pred cceecccchhhHHHHHHhcccccCCCCEEEEecCCCceEEeeee
Q 001049 287 HKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA 330 (1173)
Q Consensus 287 v~ti~SGPa~Gv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~ 330 (1173)
+.-+.+-|.|..++...- .....+++++|+||.|||||++.
T Consensus 171 v~~li~EPtAAAlay~~~---~~~~~~vlV~DlGGGT~DvSi~~ 211 (595)
T PRK01433 171 VLRLIAEPTAAAYAYGLN---KNQKGCYLVYDLGGGTFDVSILN 211 (595)
T ss_pred EEEEecCcHHHHHHHhcc---cCCCCEEEEEECCCCcEEEEEEE
Confidence 334556776655443211 11235689999999999999985
No 80
>PRK12408 glucokinase; Provisional
Probab=52.25 E-value=21 Score=41.90 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=19.2
Q ss_pred CceEEEEeccCccccEEEEecCCc
Q 001049 7 EKLRFCIDRGGTFTDVYAEIPGQL 30 (1173)
Q Consensus 7 ~~~rigIDvGGTfTD~v~~~~~g~ 30 (1173)
+...+++|+|||++=+-++|+++.
T Consensus 15 ~~~~L~~DIGGT~i~~al~d~~g~ 38 (336)
T PRK12408 15 PESFVAADVGGTHVRVALVCASPD 38 (336)
T ss_pred cccEEEEEcChhhhheeEEeccCC
Confidence 334699999999999999975544
No 81
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=51.81 E-value=14 Score=47.58 Aligned_cols=40 Identities=18% Similarity=0.427 Sum_probs=27.3
Q ss_pred ceecccchhhHHHHHHhcccccCCCCEEEEecCCCceEEeeee
Q 001049 288 KAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA 330 (1173)
Q Consensus 288 ~ti~SGPa~Gv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~ 330 (1173)
..+.+-|.|..++... .....+.++++|+||.|||||++.
T Consensus 205 ~~li~EptAAAlay~~---~~~~~~~vlV~DlGgGT~DvSv~~ 244 (663)
T PTZ00400 205 LRIINEPTAAALAFGM---DKNDGKTIAVYDLGGGTFDISILE 244 (663)
T ss_pred EEEeCchHHHHHHhcc---ccCCCcEEEEEeCCCCeEEEEEEE
Confidence 3456677766554322 112346799999999999999974
No 82
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=51.56 E-value=24 Score=40.22 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=32.0
Q ss_pred EEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHH
Q 001049 10 RFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEE 59 (1173)
Q Consensus 10 rigIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~~~~~~~~~gi~~~l~~ 59 (1173)
.||||+|+|++-++++|.+|+++...+.++ ++.+..+.+.+.|.+.+++
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~i~~~~~~~~-~~~~~~~~~~~~i~~~i~~ 51 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQIRQRRQIPT-PASQTPEALRQALSALVSP 51 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCcEEEEEEecC-CCCCCHHHHHHHHHHHHHH
Confidence 599999999999999987788444445543 2222234456666555544
No 83
>PRK13410 molecular chaperone DnaK; Provisional
Probab=51.40 E-value=14 Score=47.46 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=26.7
Q ss_pred eecccchhhHHHHHHhcccccCCCCEEEEecCCCceEEeeee
Q 001049 289 AVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA 330 (1173)
Q Consensus 289 ti~SGPa~Gv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~ 330 (1173)
.+.+-|.|..++... . ....++++++|+||.|||||++.
T Consensus 167 ~li~EPtAAAlayg~-~--~~~~~~vlV~DlGgGT~Dvsv~~ 205 (668)
T PRK13410 167 RILNEPTAAALAYGL-D--RSSSQTVLVFDLGGGTFDVSLLE 205 (668)
T ss_pred EEecchHHHHHHhcc-c--cCCCCEEEEEECCCCeEEEEEEE
Confidence 356677665554322 1 12345799999999999999985
No 84
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=51.01 E-value=28 Score=39.65 Aligned_cols=21 Identities=14% Similarity=-0.077 Sum_probs=18.1
Q ss_pred eEEEEeccCccccEEEEecCC
Q 001049 9 LRFCIDRGGTFTDVYAEIPGQ 29 (1173)
Q Consensus 9 ~rigIDvGGTfTD~v~~~~~g 29 (1173)
+.+|||+|.|.|.+|++|+++
T Consensus 2 ~~~GIDiGStttK~Vlid~~~ 22 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDG 22 (262)
T ss_pred eEEEEEcCcccEEEEEEecCC
Confidence 579999999999999997433
No 85
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=50.96 E-value=17 Score=46.25 Aligned_cols=39 Identities=28% Similarity=0.410 Sum_probs=26.3
Q ss_pred eecccchhhHHHHHHhcccccCCCCEEEEecCCCceEEeeee
Q 001049 289 AVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA 330 (1173)
Q Consensus 289 ti~SGPa~Gv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~ 330 (1173)
-+.+-|.|..++... . ......++++|+||.|||||++.
T Consensus 161 ~li~EPtAAAlay~~-~--~~~~~~vlV~DlGgGT~DvSi~~ 199 (599)
T TIGR01991 161 RLLNEPTAAAVAYGL-D--KASEGIYAVYDLGGGTFDVSILK 199 (599)
T ss_pred EEecCHHHHHHHHhh-c--cCCCCEEEEEEcCCCeEEEEEEE
Confidence 455677665543321 1 12345699999999999999984
No 86
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=50.77 E-value=42 Score=40.42 Aligned_cols=32 Identities=19% Similarity=-0.207 Sum_probs=23.7
Q ss_pred ceEEEEeccCccccEEEEecCCceEEEEEecc
Q 001049 8 KLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLS 39 (1173)
Q Consensus 8 ~~rigIDvGGTfTD~v~~~~~g~~~~~~K~~s 39 (1173)
+|.+|||+|+|.|-+|++|++++++.....+|
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~g~Il~~~i~pT 33 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDKGEVIGRGITNS 33 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCCCcEEEEEecCC
Confidence 48999999999999999976656333333443
No 87
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=50.71 E-value=16 Score=44.19 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=21.2
Q ss_pred CCEEEEecCCCceEEeeee-ceeeeee
Q 001049 312 KPLIGFDMGGTSTDVSRYA-GSYEQVL 337 (1173)
Q Consensus 312 ~~~I~~DmGGTStDv~li~-G~~~~~~ 337 (1173)
..++++||||.|||++++. |.+..+.
T Consensus 204 ~gv~vvDiGggtTdisv~~~G~l~~~~ 230 (420)
T PRK09472 204 LGVCVVDIGGGTMDIAVYTGGALRHTK 230 (420)
T ss_pred cCeEEEEeCCCceEEEEEECCEEEEEe
Confidence 4599999999999999996 7665443
No 88
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=50.38 E-value=10 Score=43.64 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=15.4
Q ss_pred EEEEeccCccccEEEEecCCc
Q 001049 10 RFCIDRGGTFTDVYAEIPGQL 30 (1173)
Q Consensus 10 rigIDvGGTfTD~v~~~~~g~ 30 (1173)
-|.+|+|||-||+.++ .+|+
T Consensus 79 ~i~vDmGGTTtDi~~i-~~G~ 98 (290)
T PF01968_consen 79 AIVVDMGGTTTDIALI-KDGR 98 (290)
T ss_dssp EEEEEE-SS-EEEEEE-ETTE
T ss_pred EEEEeCCCCEEEEEEE-ECCe
Confidence 5899999999999999 4666
No 89
>PRK13411 molecular chaperone DnaK; Provisional
Probab=50.18 E-value=15 Score=47.00 Aligned_cols=39 Identities=26% Similarity=0.538 Sum_probs=25.6
Q ss_pred ecccchhhHHHHHHhcccccCCCCEEEEecCCCceEEeeee
Q 001049 290 VLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA 330 (1173)
Q Consensus 290 i~SGPa~Gv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~ 330 (1173)
+.+-|+|..++...- ......++++||+||.|||||++.
T Consensus 166 li~EPtAAAl~y~~~--~~~~~~~vlV~DlGgGT~dvsi~~ 204 (653)
T PRK13411 166 IINEPTAAALAYGLD--KQDQEQLILVFDLGGGTFDVSILQ 204 (653)
T ss_pred EecchHHHHHHhccc--ccCCCCEEEEEEcCCCeEEEEEEE
Confidence 456676655443221 111245699999999999999984
No 90
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=49.65 E-value=10 Score=46.69 Aligned_cols=89 Identities=10% Similarity=-0.009 Sum_probs=60.3
Q ss_pred CceEEEEeccCccccEEEEecC-CceEEEEEec-------cCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeE
Q 001049 7 EKLRFCIDRGGTFTDVYAEIPG-QLEGQVLKLL-------SVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEW 78 (1173)
Q Consensus 7 ~~~rigIDvGGTfTD~v~~~~~-g~~~~~~K~~-------st~p~~~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~v~~ 78 (1173)
+.|.||||+|.-.-=+.++|.. |+.+..++.| +--+..-+..+++++..+++....+ .++++.+|..
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~-----agv~~~~V~g 76 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAK-----AGVDPADVVG 76 (544)
T ss_pred ccEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHH-----cCCChhHeeE
Confidence 5689999999888889999843 6644333322 1101111233455555544444332 4788889999
Q ss_pred EEEehhHhhhHhhhcCCCcEEEE
Q 001049 79 IRMGTTVATNALLERKGERIALC 101 (1173)
Q Consensus 79 i~hGTT~atNAllerkg~rvgli 101 (1173)
|-.-+| .|=+++.+.|..+.+.
T Consensus 77 IGvDaT-cSlvv~d~~g~pl~v~ 98 (544)
T COG1069 77 IGVDAT-CSLVVIDRDGNPLAVL 98 (544)
T ss_pred EEEcce-eeeEEECCCCCeeccC
Confidence 999999 9999999999999885
No 91
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=48.68 E-value=18 Score=46.15 Aligned_cols=75 Identities=16% Similarity=0.093 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc-eEEEEcCchhhhH--HHHHHHcCCCEEEECCCCCccchhcccc
Q 001049 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNH-ALACFGGAGPQHA--CAIARSLGMREVLIHRFCGILSAYGMGL 528 (1173)
Q Consensus 452 l~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf-~LvafGGaGplha--~~lA~~lGi~~VivP~~~~v~sA~G~~~ 528 (1173)
++.++...-+- -..+.+.+.|+....+.|+.+.+. .++..||+.-+-. -.|.+.+|.. ++...+|..+-|+|+++
T Consensus 295 itr~efe~l~~-~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~-~~~~~npdeaVA~GAAi 372 (616)
T PRK05183 295 ITREQFNALIA-PLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRT-PLTSIDPDKVVAIGAAI 372 (616)
T ss_pred EcHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccC-cCcCCCchHHHHHHHHH
Confidence 45555443332 233445566777777777776542 3555666643322 3456666754 34456677777777764
No 92
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=48.27 E-value=16 Score=42.48 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhCCCCC-Cc---eEEEEcCch--hhhHHHHHHHcCCCEEEECCCCCccchhccccc
Q 001049 468 TMCRPIRQLTEMKGHETR-NH---ALACFGGAG--PQHACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1173)
Q Consensus 468 ~Ma~air~~~~~rG~dpr-df---~LvafGGaG--plha~~lA~~lGi~~VivP~~~~v~sA~G~~~a 529 (1173)
.+.+.|+....+.+.+.+ +. .++..||+. |...-.+.+++|++ |.++.+|-..-|+|+++.
T Consensus 258 ~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~-v~~~~~P~~~va~Ga~~~ 324 (333)
T TIGR00904 258 QIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLP-VIVADDPLLCVAKGTGKA 324 (333)
T ss_pred HHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCC-ceecCChHHHHHHHHHHH
Confidence 444555554444433322 22 366677776 44445788889987 788889999999999876
No 93
>TIGR02851 spore_V_T stage V sporulation protein T. Members of this protein family are the stage V sporulation protein T (SpoVT), a protein of the sporulation/germination program in Bacillus subtilis and related species. The amino-terminal 50 amino acids are nearly perfectly conserved across all endospore-forming bacteria. SpoVT is a DNA-binding transcriptional regulator related to AbrB (See PFAM model pfam04014).
Probab=48.22 E-value=54 Score=35.29 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhcccccccccccccceecCCCCCeecccCCCceeeccchHHHHHHHHHhcCCCCCCcEEEecCC--
Q 001049 746 FMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVANAPHVPVHLGAMSSTVRWQLKYWRHNLNEGDVLVSNHP-- 823 (1173)
Q Consensus 746 L~siaeEM~~~l~RtA~Spii~e~~Dfs~aI~d~~G~lva~~~~ip~h~gsm~~~v~~~l~~~~~~l~pGDv~i~NDP-- 823 (1173)
|...+++++..|.+ .-+++.+|.|.+-=+.+.+.+---|.+. + +...+++. |+.|++++.++-
T Consensus 54 ~~~~A~~~aeII~~---------~t~~aVaITDr~~ILA~~G~g~d~~~~~-~--is~~t~~~---i~~gk~~~~~~~~~ 118 (180)
T TIGR02851 54 LGDFAKEYAESLYQ---------SLGHIVLITDRDTVIAVAGVSKKEYLNK-P--ISDELEDT---MEERKTVILSDTKD 118 (180)
T ss_pred hHHHHHHHHHHHHH---------HhCCEEEEECCCcEEEEECCChhhcCCC-c--cCHHHHHH---HHcCCEEEecCCcc
Confidence 44556666666554 5667889999987666666665555544 2 33333332 577888666654
Q ss_pred -CCCCCCCC----CeEEEEeeeeCCeEEE
Q 001049 824 -CAGGSHLP----DITVITPVFDNGKLVF 847 (1173)
Q Consensus 824 -y~Gg~Hl~----Dv~v~~PVF~~Gelv~ 847 (1173)
|.+..+.+ -..++.|++.+|+.+|
T Consensus 119 ~~i~c~~~~~~~l~s~ii~Pl~~~g~viG 147 (180)
T TIGR02851 119 GPIEIIDGQEFEYTSQVIAPIIAEGDPIG 147 (180)
T ss_pred ceeccccCCCCCcceEEEEEEEECCeEEE
Confidence 34555222 4889999999998776
No 94
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=47.50 E-value=13 Score=39.67 Aligned_cols=16 Identities=50% Similarity=0.721 Sum_probs=14.7
Q ss_pred EEEecCCCceEEeeee
Q 001049 315 IGFDMGGTSTDVSRYA 330 (1173)
Q Consensus 315 I~~DmGGTStDv~li~ 330 (1173)
|.+|+|||-||+-+++
T Consensus 2 igIDvGGT~TD~v~~d 17 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLD 17 (176)
T ss_pred eeEecCCCcEEEEEEe
Confidence 6799999999999986
No 95
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=46.58 E-value=20 Score=37.44 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=31.6
Q ss_pred EEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHHh
Q 001049 12 CIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEY 60 (1173)
Q Consensus 12 gIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~~~~~~~~~gi~~~l~~~ 60 (1173)
|||+|+|++.++++|-+|+++...+.++ | ...+.+++.|.+.++++
T Consensus 1 gidig~~~i~~~l~d~~g~ii~~~~~~~--~-~~~~~~~~~l~~~i~~~ 46 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEIIYSESIPT--P-TSPEELLDALAELIERL 46 (179)
T ss_dssp EEEEESSEEEEEEEETTSCEEEEEEEEH--H-SSHHHHHHHHHHHHHHH
T ss_pred CEEECCCEEEEEEECCCCCEEEEEEEEC--C-CCHHHHHHHHHHHHHHH
Confidence 7999999999999987788555555543 2 23345556666655554
No 96
>PRK13331 pantothenate kinase; Reviewed
Probab=42.85 E-value=52 Score=37.26 Aligned_cols=59 Identities=8% Similarity=-0.063 Sum_probs=37.5
Q ss_pred eEEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEEehhH
Q 001049 9 LRFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRMGTTV 85 (1173)
Q Consensus 9 ~rigIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~~~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~v~~i~hGTT~ 85 (1173)
..+.||||=|+|.+-+++ +++.+...+ |++.+.++ +...+.. .++++++++.+++++.+
T Consensus 8 ~~L~iDiGNT~~~~g~f~-~~~~~~~~r---t~~~~t~d-----~~~~l~~---------~~~~~~~i~~~iisSVV 66 (251)
T PRK13331 8 EWLALMIGNSRLHWGYFS-GETLVKTWD---TPHLDESI-----IQLLLPG---------QTLLIVAPNPLVIASVV 66 (251)
T ss_pred cEEEEEeCCCcEEEEEEE-CCEEEEEEE---cCCcchHH-----HHHHHHH---------cCCCccccCEEEEEecC
Confidence 568999999999999996 335233334 33433323 5556544 24556678888877753
No 97
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=42.40 E-value=2.1e+02 Score=33.53 Aligned_cols=97 Identities=12% Similarity=0.039 Sum_probs=47.7
Q ss_pred eeeeccccCcCCcccchhHHHHHhcchHHHHHHHHHHHHHHHhcCCCceEEEEEcCCCccccccccccceecccchhhHH
Q 001049 220 VSLSSALTPMVRAVPRGLTASVDAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVV 299 (1173)
Q Consensus 220 Vs~S~ei~p~~~e~eR~~TtvlNAyl~p~~~~yl~~l~~~L~~~~~~~~l~im~s~GG~~s~~~~~pv~ti~SGPa~Gv~ 299 (1173)
+...+++..+...-+-....++=|.=+-.+..|++-+++. +. .+.+++ +-+.+-.+.+..+.
T Consensus 109 ~~~D~~vl~~~~~~~~~~~Vll~Aa~k~~v~~~~~~~~~a----GL--~~~~vD----v~~~Al~r~~~~~~-------- 170 (340)
T PF11104_consen 109 VVFDYQVLGESEDGEEKMEVLLVAAPKEIVESYVELFEEA----GL--KPVAVD----VEAFALARLFEFLE-------- 170 (340)
T ss_dssp EEEEEEESS-GS-TTSEEEEEEEEEEHHHHHHHHHHHHHT----T---EEEEEE----EHHHHGGGGGHHHH--------
T ss_pred eEEEEEEeccCCCCCCceEEEEEEEcHHHHHHHHHHHHHc----CC--ceEEEe----ehHHHHHHHHHHHH--------
Confidence 6778888765522222334455566777777777777553 43 334443 11111111111100
Q ss_pred HHHHhcccccCCCCEEEEecCCCceEEeeee-ceeeeee
Q 001049 300 GYSQTLFGLETEKPLIGFDMGGTSTDVSRYA-GSYEQVL 337 (1173)
Q Consensus 300 Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~-G~~~~~~ 337 (1173)
..+. .....+.+..+|||..+|.++++. |.+..++
T Consensus 171 --~~~~-~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f~R 206 (340)
T PF11104_consen 171 --PQLP-DEEDAETVALVDIGASSTTVIIFQNGKPIFSR 206 (340)
T ss_dssp --HTST-----T-EEEEEEE-SS-EEEEEEETTEEEEEE
T ss_pred --HhCC-cccccceEEEEEecCCeEEEEEEECCEEEEEE
Confidence 0011 001123478999999999999996 8886544
No 98
>PF10144 SMP_2: Bacterial virulence factor haemolysin; InterPro: IPR019305 This entry represents a group of bacterial proteins that are membrane proteins that effect the expression of haemolysin under anaerobic conditions [].
Probab=41.13 E-value=29 Score=38.21 Aligned_cols=59 Identities=24% Similarity=0.392 Sum_probs=37.1
Q ss_pred ccceecCCCCCeecccCCCceeeccchHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCCCCeEEEEeeeeCCeEEEEEec
Q 001049 772 FSCALFGPDGGLVANAPHVPVHLGAMSSTVRWQLKYWRHNLNEGDVLVSNHPCAGGSHLPDITVITPVFDNGKLVFFVAS 851 (1173)
Q Consensus 772 fs~aI~d~~G~lva~~~~ip~h~gsm~~~v~~~l~~~~~~l~pGDv~i~NDPy~Gg~Hl~Dv~v~~PVF~~Gelv~~~a~ 851 (1173)
++++|||.+|.++|++.. ...++..+. + |.|..+. -.. .-++.||+.+++++||.=.
T Consensus 88 ldAsIYd~~G~lLA~S~~--------~~~vr~~L~-----l--------d~~~~~~-~~~-qq~VepI~~~~~~~GflRi 144 (210)
T PF10144_consen 88 LDASIYDADGVLLAQSGE--------SVSVRERLG-----L--------DGPEAGS-YGR-QQIVEPIYSDDGPLGFLRI 144 (210)
T ss_pred eEEEEECCCCCEEEEcCC--------Ccchhhhhc-----C--------Ccccccc-cCC-ceEEEEeccCCCeeEEEEE
Confidence 678999999999999742 112333331 1 1122211 011 2488999999999999765
Q ss_pred cc
Q 001049 852 RG 853 (1173)
Q Consensus 852 ~~ 853 (1173)
.-
T Consensus 145 Tl 146 (210)
T PF10144_consen 145 TL 146 (210)
T ss_pred EE
Confidence 44
No 99
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=40.94 E-value=20 Score=45.01 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCc-eEEEEcCchhhhH--HHHHHHcCCCEEEECCCCCccchhcccc
Q 001049 467 ETMCRPIRQLTEMKGHETRNH-ALACFGGAGPQHA--CAIARSLGMREVLIHRFCGILSAYGMGL 528 (1173)
Q Consensus 467 ~~Ma~air~~~~~rG~dprdf-~LvafGGaGplha--~~lA~~lGi~~VivP~~~~v~sA~G~~~ 528 (1173)
+.+.+.|+.+..+.++.+.+. .++..||+.-+-. -.|.+.+| +.+..+.+|.-.-|.|+++
T Consensus 309 ~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~ 372 (602)
T PF00012_consen 309 ERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAAL 372 (602)
T ss_dssp HHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHH
T ss_pred cccccccccccccccccccccceeEEecCcccchhhhhhhhhccc-ccccccccccccccccccc
Confidence 345556666666666555432 3566677654443 35667778 6777777777777777753
No 100
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=40.35 E-value=27 Score=44.17 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=29.6
Q ss_pred cceecccchhhHHHHHHhcccccCCCCEEEEecCCCceEEeee
Q 001049 287 HKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRY 329 (1173)
Q Consensus 287 v~ti~SGPa~Gv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li 329 (1173)
+.-+..=|++..++.. +.....+..|+++||+||+|||||++
T Consensus 173 vlrii~EPtAaalAyg-l~k~~~~~~~VlI~DlGggtfdvs~l 214 (620)
T KOG0101|consen 173 VLRIINEPTAAALAYG-LDKKVLGERNVLIFDLGGGTFDVSVL 214 (620)
T ss_pred eeeeecchHHHHHHhh-ccccccceeeEEEEEcCCCceeeeeE
Confidence 3344556776666554 33223467899999999999999987
No 101
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=40.18 E-value=22 Score=41.54 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=17.4
Q ss_pred EEEEeccCccccEEEEecCCc
Q 001049 10 RFCIDRGGTFTDVYAEIPGQL 30 (1173)
Q Consensus 10 rigIDvGGTfTD~v~~~~~g~ 30 (1173)
-|-+|+|||-||++++ .+|+
T Consensus 130 ~I~~DmGGTTtDi~~i-~~G~ 149 (318)
T TIGR03123 130 CLFVDMGSTTTDIIPI-IDGE 149 (318)
T ss_pred EEEEEcCccceeeEEe-cCCE
Confidence 5899999999999999 4666
No 102
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=40.11 E-value=38 Score=39.32 Aligned_cols=37 Identities=16% Similarity=-0.027 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCc
Q 001049 456 DIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGA 495 (1173)
Q Consensus 456 eaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGa 495 (1173)
+.|..+++.....++.++..+..- +||+.-. +.+||.
T Consensus 234 ~~A~~~~~~~~~~lg~~i~nl~~~--ldpeggv-~v~GG~ 270 (316)
T TIGR00749 234 TDCRRALSLFCVIYGRFAGNLALN--LGTRGGV-YIAGGI 270 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hCCCCcE-EEECcH
Confidence 677888999999999999988866 7787443 344554
No 103
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=39.58 E-value=47 Score=40.72 Aligned_cols=28 Identities=14% Similarity=0.381 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCceEEeeee-ceeeeeee
Q 001049 311 EKPLIGFDMGGTSTDVSRYA-GSYEQVLE 338 (1173)
Q Consensus 311 ~~~~I~~DmGGTStDv~li~-G~~~~~~~ 338 (1173)
..-+..+||||-|||++++. |+...+..
T Consensus 145 e~gVa~IDIGgGTT~iaVf~~G~l~~T~~ 173 (475)
T PRK10719 145 NTRVLNIDIGGGTANYALFDAGKVIDTAC 173 (475)
T ss_pred cCceEEEEeCCCceEEEEEECCEEEEEEE
Confidence 44599999999999999996 88765543
No 104
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=37.46 E-value=68 Score=33.97 Aligned_cols=74 Identities=23% Similarity=0.259 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCchh--hhHHHHHHHcCCCEEEECCCCCccchhccccc
Q 001049 452 MTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGP--QHACAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1173)
Q Consensus 452 l~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaGp--lha~~lA~~lGi~~VivP~~~~v~sA~G~~~a 529 (1173)
.+..+.+.+|++=..-++...++.+....|..++. |++.||+.- +..-.+|+.+|.+ |.+|.. .-.+|+|+++.
T Consensus 118 ~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~--i~~~GG~~~n~~~~q~~Advl~~~-V~~~~~-~e~~a~GaA~~ 193 (198)
T PF02782_consen 118 TTRADLARAVLEGIAFSLRQILEELEELTGIPIRR--IRVSGGGAKNPLWMQILADVLGRP-VVRPEV-EEASALGAALL 193 (198)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESE--EEEESGGGGSHHHHHHHHHHHTSE-EEEESS-STHHHHHHHHH
T ss_pred cCHHHHHHHHHHhHHHHHHHhhhhcccccccccee--eEeccccccChHHHHHHHHHhCCc-eEeCCC-CchHHHHHHHH
Confidence 35677777777766666666666666555777663 455566543 3334689999976 777776 77889998763
No 105
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=36.35 E-value=61 Score=39.81 Aligned_cols=53 Identities=19% Similarity=0.367 Sum_probs=35.8
Q ss_pred cceecccchhhHHHHHHhcccccCCCCEEEEecCCCceEEeeee-ceeeeeeeeEEccE
Q 001049 287 HKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA-GSYEQVLETQIAGA 344 (1173)
Q Consensus 287 v~ti~SGPa~Gv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~-G~~~~~~~~~i~g~ 344 (1173)
++.+++|== .||+.++. .....++=+||||=||.+++.+ |+..-+.--.|+|.
T Consensus 123 LEsiiAgkG---sGA~~~S~--~~~~~V~NiDIGGGTtN~avf~~G~v~~T~cl~IGGR 176 (473)
T PF06277_consen 123 LESIIAGKG---SGAAALSK--EHHTVVANIDIGGGTTNIAVFDNGEVIDTACLDIGGR 176 (473)
T ss_pred HHHHHhccC---ccHHHHhh--hhCCeEEEEEeCCCceeEEEEECCEEEEEEEEeeccE
Confidence 555555542 24566653 2456799999999999999997 98865554444443
No 106
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=35.52 E-value=80 Score=38.40 Aligned_cols=54 Identities=26% Similarity=0.249 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHC-C-CcEEEEEccCcCCCchhHHHHHHHHHhcCCceeeee
Q 001049 170 PVNEKTLEPLLKGLLEK-G-ISCLAVVLMHSYTFPQHEMAVEKLALGLGFRHVSLS 223 (1173)
Q Consensus 170 plde~~v~~~~~~l~~~-g-v~avAV~~l~S~~np~hE~rv~ei~~~~~~~~Vs~S 223 (1173)
-++.+++++.++++++. . =.-++|.|+++..+|..|....+++.+.++..|..|
T Consensus 47 ~l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~~~v~l~le~gV~~ve~s 102 (418)
T cd04742 47 GLPLDEVEQAIERIQAALGNGEPYGVNLIHSPDEPELEEGLVDLFLRHGVRVVEAS 102 (418)
T ss_pred CCCHHHHHHHHHHHHHhccCCCCeEEeeecCCCCchhHHHHHHHHHHcCCCEEEec
Confidence 36789999999999984 3 368999999988888888887788887776445555
No 107
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=34.53 E-value=2.8e+02 Score=33.67 Aligned_cols=95 Identities=18% Similarity=0.231 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCceEEEEcCchh-hhHHHHHHHc--CCCEEEECCCCC-ccchhcccccceeEEEEEEE
Q 001049 464 VANETMCRPIRQLTEMKGHETRNHALACFGGAGP-QHACAIARSL--GMREVLIHRFCG-ILSAYGMGLADVVEEAQEPY 539 (1173)
Q Consensus 464 ia~~~Ma~air~~~~~rG~dprdf~LvafGGaGp-lha~~lA~~l--Gi~~VivP~~~~-v~sA~G~~~ad~~~~~~~~~ 539 (1173)
.|.+.|+++...+..+.--+-+=..+++.||+|+ ..+....+.| |+||++|-..++ -.+.| ...+|+.--++
T Consensus 72 ~ai~~M~~ga~~~v~~l~~~g~i~Gvi~~GGs~GT~lat~aMr~LPiG~PKlmVST~ASGd~~~y-vg~sDI~mm~S--- 147 (403)
T PF06792_consen 72 EAIEAMARGAARFVSDLYDEGKIDGVIGIGGSGGTALATAAMRALPIGFPKLMVSTMASGDTSPY-VGESDITMMYS--- 147 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccEEEEecCCccHHHHHHHHHhCCCCCCeEEEEccCCCCcccc-cCcCCEEEeee---
Confidence 3455666665555543322222236788888854 4555666766 999999976542 22221 12233322222
Q ss_pred eeccCCCCHHHHHHHHHHHHHHHHHHHH
Q 001049 540 SAVYGPESVLEVSRREGILSKQVKQKLQ 567 (1173)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~l~~~a~~~l~ 567 (1173)
+ .|...+|.+.++.-..|-..+.
T Consensus 148 ---V--vDiaGlN~isr~vL~NAA~Ai~ 170 (403)
T PF06792_consen 148 ---V--VDIAGLNSISRRVLSNAAGAIA 170 (403)
T ss_pred ---c--cccccCCHHHHHHHHHHHHHHH
Confidence 1 2455677777666555554443
No 108
>PRK11477 carbohydrate diacid transcriptional activator CdaR; Provisional
Probab=33.79 E-value=93 Score=37.09 Aligned_cols=71 Identities=15% Similarity=0.286 Sum_probs=47.0
Q ss_pred ccccceecCCCCCeecccCCCceeeccchHHHHHHHHHhcCCCCCCcEEEecCC----CCCCCCCCCeEEEEeeeeCCeE
Q 001049 770 LDFSCALFGPDGGLVANAPHVPVHLGAMSSTVRWQLKYWRHNLNEGDVLVSNHP----CAGGSHLPDITVITPVFDNGKL 845 (1173)
Q Consensus 770 ~Dfs~aI~d~~G~lva~~~~ip~h~gsm~~~v~~~l~~~~~~l~pGDv~i~NDP----y~Gg~Hl~Dv~v~~PVF~~Gel 845 (1173)
-++..-|.|.+|..||.+. |-.+|+.....+.++ +.|+.+..|+- |.| + -| .+-.|||++|++
T Consensus 22 i~~ninimd~~G~IIaS~d--~~Rig~~HegA~~~~-------~~~~~~~i~~~~~~~~~g-~-k~--GiN~Pi~~~~~v 88 (385)
T PRK11477 22 IDTNINVMDARGRIIGSGD--RERIGELHEGALLVL-------SQGRVVDIDDAVARHLHG-V-RQ--GINLPLRLEGEI 88 (385)
T ss_pred cCCCeEEECCCCEEEecCC--hHHcccccHHHHHHH-------hcCCeeeecHHHHhhcCC-C-Cc--CceeeEEECCEE
Confidence 4567889999999999753 455677666655555 33444444433 333 2 22 355799999999
Q ss_pred EEEEeccc
Q 001049 846 VFFVASRG 853 (1173)
Q Consensus 846 v~~~a~~~ 853 (1173)
+|+.+..|
T Consensus 89 iGvIgItG 96 (385)
T PRK11477 89 VGVIGLTG 96 (385)
T ss_pred EEEEecCC
Confidence 99987554
No 109
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=32.69 E-value=41 Score=40.82 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=21.7
Q ss_pred CCEEEEecCCCceEEeeee-ceeeeee
Q 001049 312 KPLIGFDMGGTSTDVSRYA-GSYEQVL 337 (1173)
Q Consensus 312 ~~~I~~DmGGTStDv~li~-G~~~~~~ 337 (1173)
-.+..+||||=||||+++. |.+..+.
T Consensus 203 lGv~lIDiG~GTTdIai~~~G~l~~~~ 229 (418)
T COG0849 203 LGVALIDIGGGTTDIAIYKNGALRYTG 229 (418)
T ss_pred cCeEEEEeCCCcEEEEEEECCEEEEEe
Confidence 3599999999999999996 8885543
No 110
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=31.64 E-value=24 Score=19.04 Aligned_cols=8 Identities=75% Similarity=1.979 Sum_probs=5.8
Q ss_pred CCCcccCC
Q 001049 1165 PAGGGWGS 1172 (1173)
Q Consensus 1165 ~GGGG~Gd 1172 (1173)
|-|||||.
T Consensus 1 phgG~Wgq 8 (8)
T PF03991_consen 1 PHGGGWGQ 8 (8)
T ss_pred CCCCcCCC
Confidence 45899983
No 111
>cd05401 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins. Escherichia coli GlnD and -E participate in the Glutamine synthetase (GS)/Glutamate synthase (GOGAT) pathway for the assimilation of ammonium nitrogen. In nitrogen sufficiency, GlnE adenylates GS, reducing GS activity; when nitrogen is limiting, GlnE deadenylates GS-AMP, restoring GS activity. When nitrogen is limiting, GlnD uridylylates the nitrogen regulatory protein PII to PII-UTP, and in nitrogen sufficiency, it removes the modifying groups. The activity of Escherichia coli GlnE is modulated by PII-proteins. PII-UMP promotes GlnE deadenylation activity, and PII promotes GlnE adenylation activity. Escherichia coli GlnE has two separate NT domains. The N-terminal NT domain catalyzes the deadenylylation of GS, and the C-terminal NT domain the adenylylation reaction. The majority of proteins in this family conta
Probab=31.54 E-value=2.3e+02 Score=29.71 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCceEEEEcCchh
Q 001049 451 DMTVEDIALGFVNVANETMCRPIRQLTEMKG--HETRNHALACFGGAGP 497 (1173)
Q Consensus 451 gl~~eeaA~gi~~ia~~~Ma~air~~~~~rG--~dprdf~LvafGGaGp 497 (1173)
+.++.++...+-.++..-+.++++....+.+ -.|.+|+++++|+.|-
T Consensus 18 ~~~~~~~~~~ls~l~D~~~~~~~~~~~~~~~~~~~~~~~~~la~Gs~GR 66 (172)
T cd05401 18 GASIRAISRALSDLADALLRRALELALAELGKGPPPVPFALLALGSYGR 66 (172)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEeCCccc
Confidence 4677777777778888888888887777654 5678899999999864
No 112
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=31.05 E-value=55 Score=37.57 Aligned_cols=46 Identities=35% Similarity=0.376 Sum_probs=28.4
Q ss_pred cceecccchhhHHHHHHhcccccCCCCEEEEecCCCceEEeeee--ceeee
Q 001049 287 HKAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYA--GSYEQ 335 (1173)
Q Consensus 287 v~ti~SGPa~Gv~Ga~~l~~~~~g~~~~I~~DmGGTStDv~li~--G~~~~ 335 (1173)
+++-.+=+-..+.||.-.- + -.+.+..+||||-|||.|+|+ |+...
T Consensus 112 V~igGvEAemAi~GALTTP-G--t~~PlaIlDmG~GSTDAsii~~~g~v~~ 159 (332)
T PF08841_consen 112 VEIGGVEAEMAILGALTTP-G--TDKPLAILDMGGGSTDASIINRDGEVTA 159 (332)
T ss_dssp EEEECEHHHHHHHHHTTST-T----SSEEEEEE-SSEEEEEEE-TTS-EEE
T ss_pred eEEccccHHHHHhcccCCC-C--CCCCeEEEecCCCcccHHHhCCCCcEEE
Confidence 4444444556677765542 1 235788999999999999994 76643
No 113
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=30.25 E-value=62 Score=36.85 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=21.7
Q ss_pred CCCCEEEEecCCCceEEeeee-ceeee
Q 001049 310 TEKPLIGFDMGGTSTDVSRYA-GSYEQ 335 (1173)
Q Consensus 310 g~~~~I~~DmGGTStDv~li~-G~~~~ 335 (1173)
..++.+++||||-||.+++.+ |++..
T Consensus 110 ~~~~~lviDIGGGStEl~~~~~~~~~~ 136 (285)
T PF02541_consen 110 PDKNGLVIDIGGGSTELILFENGKVVF 136 (285)
T ss_dssp TTSSEEEEEEESSEEEEEEEETTEEEE
T ss_pred ccCCEEEEEECCCceEEEEEECCeeeE
Confidence 456899999999999999996 66643
No 114
>PRK13324 pantothenate kinase; Reviewed
Probab=30.07 E-value=1.3e+02 Score=34.13 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=40.8
Q ss_pred EEEEeccCccccEEEEecCCceEEEEEeccCCCCCCCChHHHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEEehh
Q 001049 10 RFCIDRGGTFTDVYAEIPGQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEYTGEKIPRTSKIPTDKIEWIRMGTT 84 (1173)
Q Consensus 10 rigIDvGGTfTD~v~~~~~g~~~~~~K~~st~p~~~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~v~~i~hGTT 84 (1173)
.+.||+|=|+|..-++| +++.+...+.+|-.....++.+..-+...+... +.+..+++.+++++-
T Consensus 2 iL~iDiGNT~ik~gl~~-~~~~~~~~r~~t~~~~~t~de~~~~l~~~~~~~---------~~~~~~i~~viisSV 66 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD-GDRIVSQIRYATSSVDSTSDQMGVFLRQALREN---------SVDLGKIDGCGISSV 66 (258)
T ss_pred EEEEEeCCCceEEEEEE-CCEEEEEEEEecCccccchHHHHHHHHHHHHhc---------CCCccCCCeEEEEeC
Confidence 68999999999999986 334334456544123334455555566665442 345556777777764
No 115
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=28.81 E-value=1.8e+02 Score=33.68 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---CceEEEEcCc
Q 001049 455 EDIALGFVNVANETMCRPIRQLTEMKGHETR---NHALACFGGA 495 (1173)
Q Consensus 455 eeaA~gi~~ia~~~Ma~air~~~~~rG~dpr---df~LvafGGa 495 (1173)
.+++..|++-|-+..++.|+.+..+-+-+-+ .+.++++||=
T Consensus 230 d~~~~~ifr~Ag~~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V 273 (336)
T KOG1794|consen 230 DPLSAEIFRNAGETLGRHVVAVLPQLPPTLKKGKTLPIVCVGGV 273 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcCchhcccCcceEEEEcch
Confidence 5788899999999999999999987655544 4889999983
No 116
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=27.56 E-value=2.7e+02 Score=32.05 Aligned_cols=54 Identities=17% Similarity=0.057 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEEcc---CcCCCc-hhHHHHHHHHHhc-CCceeeee
Q 001049 170 PVNEKTLEPLLKGLLEKGISCLAVVLM---HSYTFP-QHEMAVEKLALGL-GFRHVSLS 223 (1173)
Q Consensus 170 plde~~v~~~~~~l~~~gv~avAV~~l---~S~~np-~hE~rv~ei~~~~-~~~~Vs~S 223 (1173)
.+|++.+++.++.+.+.||+.|.|+.- +.+.+. +.++-++..++.. +-.||..+
T Consensus 17 ~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~g 75 (289)
T cd00951 17 SFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAG 75 (289)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEe
Confidence 378889999999999999999999875 333333 3333344444443 33344443
No 117
>PLN02913 dihydrofolate synthetase
Probab=26.58 E-value=1.6e+02 Score=36.76 Aligned_cols=76 Identities=21% Similarity=0.358 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEE--------ehhHhhhHhhhcCCCcEEEEEccCchhhhhhccCCCCCCc
Q 001049 50 VEGIRRILEEYTGEKIPRTSKIPTDKIEWIRM--------GTTVATNALLERKGERIALCVTRGFKDLLQIGNQARPQIF 121 (1173)
Q Consensus 50 ~~gi~~~l~~~~~~~~~~~~~~~~~~v~~i~h--------GTT~atNAllerkg~rvglitt~GfrD~l~igr~~rp~~~ 121 (1173)
++-++.+++.+ +.+...+. ++| +|.-.+-++|+..|-|||+.|++. ++
T Consensus 58 L~r~~~ll~~L---------G~P~~~~~-vIhVaGTNGKGSt~a~l~~iL~~aG~~vG~fTSPH--------------l~ 113 (510)
T PLN02913 58 LGRMRRLMDRL---------GNPHSKFK-AVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPH--------------LR 113 (510)
T ss_pred HHHHHHHHHHc---------CCchhhCc-EEEEeCCCchHHHHHHHHHHHHhcCCCeEEECCCC--------------Cc
Confidence 56677777764 21222343 666 455668899999999999987544 32
Q ss_pred cccccCCCCcceeEEEeeEeeecc--cccccccccceeecccCceeEEecCCCHHHHHHHHHHHHHC
Q 001049 122 DLTVSTPSNLYEEVIEVDERVELV--LENEKENQESLVKGVSGELVRVVKPVNEKTLEPLLKGLLEK 186 (1173)
Q Consensus 122 ~~~~~~P~~l~~~~~~v~eRi~~~--g~~~~~~~~~~v~G~~g~~g~v~~plde~~v~~~~~~l~~~ 186 (1173)
+ ..|||..+ | +|++++++.++++++++.
T Consensus 114 ~---------------~~ERi~in~~g----------------------~~is~~~~~~~~~~v~~~ 143 (510)
T PLN02913 114 S---------------IRERISVGKLG----------------------KPVSTNTLNDLFHGIKPI 143 (510)
T ss_pred e---------------eceEEEECCCC----------------------CcCCHHHHHHHHHHHHHH
Confidence 2 36888775 5 788999998888877653
No 118
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=26.07 E-value=1.7e+02 Score=30.48 Aligned_cols=91 Identities=22% Similarity=0.301 Sum_probs=58.6
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCcEEEEEccCcCCCchhHHHHHHHHHhcCCceeeeeccccCcCCcccchhHHHHHhcc
Q 001049 166 RVVKPVNEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGLGFRHVSLSSALTPMVRAVPRGLTASVDAYL 245 (1173)
Q Consensus 166 ~v~~plde~~v~~~~~~l~~~gv~avAV~~l~S~~np~hE~rv~ei~~~~~~~~Vs~S~ei~p~~~e~eR~~TtvlNAyl 245 (1173)
..+....+++.+++.+.|.+.+.+ +-|-.-+-|-+|..|..++++.++ |...|. +.|.+=.|..++|
T Consensus 64 SPL~~~t~~q~~~l~~~L~~~~~~-~~v~~amry~~P~i~~~l~~l~~~-g~~~ii----vlPl~P~~S~~Tt------- 130 (159)
T cd03411 64 SPLNEITRAQAEALEKALDERGID-VKVYLAMRYGPPSIEEALEELKAD-GVDRIV----VLPLYPQYSASTT------- 130 (159)
T ss_pred CccHHHHHHHHHHHHHHHhccCCC-cEEEehHhcCCCCHHHHHHHHHHc-CCCEEE----EEECCcccccccH-------
Confidence 445555666666666677665433 334444777899999999988765 443333 5577777888887
Q ss_pred hHHHHHHHHHHHHHHHhcCCCceEEEEE
Q 001049 246 TPVIKEYLSGFMSKFDEGLAKVNVLFMQ 273 (1173)
Q Consensus 246 ~p~~~~yl~~l~~~L~~~~~~~~l~im~ 273 (1173)
..|++.+.+.+++.....++.+..
T Consensus 131 ----~s~~~~~~~~~~~~~~~~~~~~i~ 154 (159)
T cd03411 131 ----GSYLDEVERALKKLRPAPELRVIR 154 (159)
T ss_pred ----HHHHHHHHHHHHhcCCCCcEEEeC
Confidence 677788888877643233455543
No 119
>PRK09732 hypothetical protein; Provisional
Probab=25.96 E-value=2.8e+02 Score=28.54 Aligned_cols=73 Identities=19% Similarity=0.172 Sum_probs=43.0
Q ss_pred ccccceecCCCCCeeccc--CCCceeeccchHHHHHHH--HHh-------cCCCCCCcEEEecCCCCCCCCCCCeEEE--
Q 001049 770 LDFSCALFGPDGGLVANA--PHVPVHLGAMSSTVRWQL--KYW-------RHNLNEGDVLVSNHPCAGGSHLPDITVI-- 836 (1173)
Q Consensus 770 ~Dfs~aI~d~~G~lva~~--~~ip~h~gsm~~~v~~~l--~~~-------~~~l~pGDv~i~NDPy~Gg~Hl~Dv~v~-- 836 (1173)
.-.+.+|.|+.|++++.. .+-+.| +...+.+... ..| .+.+++|..++.+. +.++.+
T Consensus 28 ~~v~iaVvD~~G~l~a~~RmDgA~~~--s~~iA~~KA~TAa~~~~~T~~~~~~~~~g~~~~~~~--------~~~~~~~G 97 (134)
T PRK09732 28 WSVSIAVADDGGHLLALSRMDDCAPI--AAYISQEKARTAALGRRETKGYEEMVNNGRTAFVTA--------PLLTSLEG 97 (134)
T ss_pred CCEEEEEEcCCCCEEEEEEcCCCccc--cHHHHHHHHHHHHHcCCCHHHHHHHHccCchhhccC--------CCEEEeCC
Confidence 356889999999999964 455544 3333433221 112 22456776544333 333333
Q ss_pred -EeeeeCCeEEEEEecc
Q 001049 837 -TPVFDNGKLVFFVASR 852 (1173)
Q Consensus 837 -~PVF~~Gelv~~~a~~ 852 (1173)
.||..+|++|+=...-
T Consensus 98 G~Pi~~~g~viGAIGVS 114 (134)
T PRK09732 98 GVPVVVDGQIIGAVGVS 114 (134)
T ss_pred eeEEeECCEEEEEEEcC
Confidence 5998999998865543
No 120
>PF12390 Se-cys_synth_N: Selenocysteine synthase N terminal
Probab=25.61 E-value=86 Score=25.26 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=22.3
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHH
Q 001049 938 LIKELIEQYGLKTVQAYMTYVQLNA 962 (1173)
Q Consensus 938 rl~eLi~ryG~d~v~~~~~~i~~~s 962 (1173)
.+.+++++||...|.+++++.++..
T Consensus 15 ~~~~l~~~~~r~~v~~~vR~~ld~~ 39 (40)
T PF12390_consen 15 EIQDLIERYGRPLVVDAVREVLDEL 39 (40)
T ss_pred hhHHHHHHcCHHHHHHHHHHHHHHh
Confidence 5788999999999999999998864
No 121
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=25.57 E-value=1.7e+02 Score=35.98 Aligned_cols=54 Identities=24% Similarity=0.210 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHCCCc-E-EEEEccCcCCCchhHHHHHHHHHhcCCceeeee
Q 001049 170 PVNEKTLEPLLKGLLEKGIS-C-LAVVLMHSYTFPQHEMAVEKLALGLGFRHVSLS 223 (1173)
Q Consensus 170 plde~~v~~~~~~l~~~gv~-a-vAV~~l~S~~np~hE~rv~ei~~~~~~~~Vs~S 223 (1173)
-++.+++++.++++++.=-+ . ++|.|+++..+|..|.+..+++.+.++..|..|
T Consensus 52 ~l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~~~~~e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 52 GLPLEEVEQAIHRIQQALPGGPAYGVNLIHSPSDPALEWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceEEEecccCCCcccHHHHHHHHHHcCCCEEEec
Confidence 36789999999999874212 4 999999999899888888888777666445555
No 122
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=25.55 E-value=62 Score=30.26 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=17.9
Q ss_pred CEEEEecCCCceEEeeee--cee
Q 001049 313 PLIGFDMGGTSTDVSRYA--GSY 333 (1173)
Q Consensus 313 ~~I~~DmGGTStDv~li~--G~~ 333 (1173)
.++++|+|||.+.+++++ |+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~~ 24 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGKL 24 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCCE
Confidence 378999999999999994 554
No 123
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=25.51 E-value=3.4e+02 Score=30.76 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=61.4
Q ss_pred eeEEecCCCHHHHHHHHHHHHHCCCcEEEEEccCcCCCchhHHHHHHHHHhc-CCceeeeeccccCcCCcccchhHHHHH
Q 001049 164 LVRVVKPVNEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGL-GFRHVSLSSALTPMVRAVPRGLTASVD 242 (1173)
Q Consensus 164 ~g~v~~plde~~v~~~~~~l~~~gv~avAV~~l~S~~np~hE~rv~ei~~~~-~~~~Vs~S~ei~p~~~e~eR~~TtvlN 242 (1173)
+|-++-.+..++..+.++.+++.|++.+-++ ++.-| +.|++++++.. |++++..+.-+..+ |
T Consensus 117 dgviipDlp~ee~~~~~~~~~~~gl~~i~lv---~P~T~--~eri~~i~~~~~gfiy~vs~~G~TG~-----~------- 179 (256)
T TIGR00262 117 DGVLVADLPLEESGDLVEAAKKHGVKPIFLV---APNAD--DERLKQIAEKSQGFVYLVSRAGVTGA-----R------- 179 (256)
T ss_pred CEEEECCCChHHHHHHHHHHHHCCCcEEEEE---CCCCC--HHHHHHHHHhCCCCEEEEECCCCCCC-----c-------
Confidence 3356666666788899999999998876333 33333 56888888876 67654333333332 1
Q ss_pred hcchHHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccccccc
Q 001049 243 AYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFS 285 (1173)
Q Consensus 243 Ayl~p~~~~yl~~l~~~L~~~~~~~~l~im~s~GG~~s~~~~~ 285 (1173)
.-+.|-+..+++++++.. +.|+.+ +||+-+.++++
T Consensus 180 ~~~~~~~~~~i~~lr~~~-----~~pi~v---gfGI~~~e~~~ 214 (256)
T TIGR00262 180 NRAASALNELVKRLKAYS-----AKPVLV---GFGISKPEQVK 214 (256)
T ss_pred ccCChhHHHHHHHHHhhc-----CCCEEE---eCCCCCHHHHH
Confidence 112355677777776642 346544 89998887764
No 124
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=25.33 E-value=84 Score=37.59 Aligned_cols=54 Identities=15% Similarity=0.316 Sum_probs=40.9
Q ss_pred ehhHhhhHhhhcCCCcEEEEEccCchhhhhhccCCCCCCccccccCCCCcceeEEEeeEeeecccccccccccceeeccc
Q 001049 82 GTTVATNALLERKGERIALCVTRGFKDLLQIGNQARPQIFDLTVSTPSNLYEEVIEVDERVELVLENEKENQESLVKGVS 161 (1173)
Q Consensus 82 GTT~atNAllerkg~rvglitt~GfrD~l~igr~~rp~~~~~~~~~P~~l~~~~~~v~eRi~~~g~~~~~~~~~~v~G~~ 161 (1173)
+|+..+.++|+..|-|||+++|.++ ++ ..|||..+|
T Consensus 31 St~~~l~~iL~~~g~~vg~~tSphl--------------~~---------------~~eri~i~g--------------- 66 (397)
T TIGR01499 31 STCAFLESILRAAGYKVGLFTSPHL--------------VS---------------FNERIRING--------------- 66 (397)
T ss_pred HHHHHHHHHHHHcCCCeeEEeCCCc--------------Cc---------------cceEEEECC---------------
Confidence 5677889999999999999998774 11 258887754
Q ss_pred CceeEEecCCCHHHHHHHHHHHHHC
Q 001049 162 GELVRVVKPVNEKTLEPLLKGLLEK 186 (1173)
Q Consensus 162 g~~g~v~~plde~~v~~~~~~l~~~ 186 (1173)
++++++++.++.+++++.
T Consensus 67 -------~~i~~~~~~~~~~~v~~~ 84 (397)
T TIGR01499 67 -------EPISDEELAQAFEQVRPI 84 (397)
T ss_pred -------EECCHHHHHHHHHHHHHH
Confidence 467888888887777654
No 125
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=25.27 E-value=80 Score=37.02 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=30.3
Q ss_pred eEEEEcCchhhhH--HHHHHHcCCCEEEECCCCCccchhccccc
Q 001049 488 ALACFGGAGPQHA--CAIARSLGMREVLIHRFCGILSAYGMGLA 529 (1173)
Q Consensus 488 ~LvafGGaGplha--~~lA~~lGi~~VivP~~~~v~sA~G~~~a 529 (1173)
-++.+||++=|+. -.+.++.|++ |++-+.|=.+-|.|...+
T Consensus 286 givltGGGalLrglD~~i~~et~~p-v~ia~~pL~~Va~G~G~~ 328 (342)
T COG1077 286 GIVLTGGGALLRGLDRLLSEETGVP-VIIADDPLTCVAKGTGKA 328 (342)
T ss_pred ceEEecchHHhcCchHhHHhccCCe-EEECCChHHHHHhccchh
Confidence 3788999877776 3688899998 677777766667676544
No 126
>PRK13320 pantothenate kinase; Reviewed
Probab=25.18 E-value=1.9e+02 Score=32.51 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=22.3
Q ss_pred ceEEEEeccCccccEEEEecCCceEEEEEec
Q 001049 8 KLRFCIDRGGTFTDVYAEIPGQLEGQVLKLL 38 (1173)
Q Consensus 8 ~~rigIDvGGTfTD~v~~~~~g~~~~~~K~~ 38 (1173)
+|.+.||+|-|++..-+++ +++.+...+.+
T Consensus 2 ~M~L~iDiGNT~ik~~~~~-~~~~~~~~~~~ 31 (244)
T PRK13320 2 SMNLVIDIGNTTTKLAVFE-GDELLEVFVVS 31 (244)
T ss_pred ceEEEEEeCCCcEEEEEEE-CCEEEEEEEEc
Confidence 3689999999999999996 44534455553
No 127
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=25.04 E-value=62 Score=39.67 Aligned_cols=30 Identities=17% Similarity=0.082 Sum_probs=24.8
Q ss_pred CceEEEEeccCccccEEEEecCCceEEEEE
Q 001049 7 EKLRFCIDRGGTFTDVYAEIPGQLEGQVLK 36 (1173)
Q Consensus 7 ~~~rigIDvGGTfTD~v~~~~~g~~~~~~K 36 (1173)
++|.+.||.|-|.+-++++|.+|+++..++
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iva~~q 33 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQ 33 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCchhhhh
Confidence 579999999999999999988877444444
No 128
>PF05651 Diacid_rec: Putative sugar diacid recognition; InterPro: IPR008599 This region is found in several proteins characterised as carbohydrate diacid regulators (e.g. P36047 from SWISSPROT). An HTH DNA-binding motif is found at the C terminus of these proteins suggesting that this region includes the sugar recognition region.
Probab=24.60 E-value=96 Score=31.85 Aligned_cols=73 Identities=12% Similarity=0.305 Sum_probs=51.5
Q ss_pred cccccceecCCCCCeecccCCCceeeccchHHHHHHHHHhcCCCCCCc-EEEecCC--CCCCCCCCCeEEEEeeeeCCeE
Q 001049 769 RLDFSCALFGPDGGLVANAPHVPVHLGAMSSTVRWQLKYWRHNLNEGD-VLVSNHP--CAGGSHLPDITVITPVFDNGKL 845 (1173)
Q Consensus 769 ~~Dfs~aI~d~~G~lva~~~~ip~h~gsm~~~v~~~l~~~~~~l~pGD-v~i~NDP--y~Gg~Hl~Dv~v~~PVF~~Gel 845 (1173)
.-++..-|+|.+|..||.+ -|-.+|+.....+.+++. ++ +.++++- ...|++. .+-.||+++|++
T Consensus 16 ~i~~~inimd~~G~IIASt--d~~RIG~~HegA~~~i~~-------~~~~~i~~~~~~~~~g~k~---GinlPI~~~g~~ 83 (135)
T PF05651_consen 16 IIGYNINIMDENGIIIAST--DPERIGTFHEGAKEVIRT-------NKEIEITEEDAEQYPGVKP---GINLPIIFNGEV 83 (135)
T ss_pred HcCCCEEEECCCcEEEecC--ChhhcCccCHHHHHHHHc-------CCcccccHhHHhhccCCCc---ceeeeEEECCEE
Confidence 4567888999999999864 467788888887777752 22 4455554 1234442 456799999999
Q ss_pred EEEEeccc
Q 001049 846 VFFVASRG 853 (1173)
Q Consensus 846 v~~~a~~~ 853 (1173)
+|-.+..|
T Consensus 84 iGviGItG 91 (135)
T PF05651_consen 84 IGVIGITG 91 (135)
T ss_pred EEEEEEec
Confidence 99766655
No 129
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=23.88 E-value=3.3e+02 Score=33.60 Aligned_cols=97 Identities=14% Similarity=0.128 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCc--hhh
Q 001049 421 PLDINATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGA--GPQ 498 (1173)
Q Consensus 421 ~Ld~~~a~~a~~~ia~~lg~~~~~~~~~~~gl~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGa--Gpl 498 (1173)
..|+..|+.+|--+....|. ...-+..+.+.+|++=..-.|...++.+-...|..++. |.+.||+ -++
T Consensus 321 ~~~~~~arg~~~gl~~~~G~--------~~~~~~~~l~RAvlEgva~~~r~~l~~l~~~~g~~~~~--i~~~GGga~s~~ 390 (471)
T PRK10640 321 FINPPSMCSEIQAACRETAQ--------PVPESDAELARCIFDSLALLYADVLHELAQLRGEPFSQ--LHIVGGGCQNAL 390 (471)
T ss_pred ccCchhhHHHHHHHHHHhCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcce--EEEECChhhhHH
Confidence 35665678888654444431 11237788888888888888888888776544654443 3444443 233
Q ss_pred hHHHHHHHcCCCEEEECCCCCccchhcccccc
Q 001049 499 HACAIARSLGMREVLIHRFCGILSAYGMGLAD 530 (1173)
Q Consensus 499 ha~~lA~~lGi~~VivP~~~~v~sA~G~~~ad 530 (1173)
..-.+|+.+|++ |..++. -.+|+|+++.-
T Consensus 391 w~Qi~ADvlg~p-V~~~~~--ea~alGaa~~a 419 (471)
T PRK10640 391 LNQLCADACGIR-VIAGPV--EASTLGNIGIQ 419 (471)
T ss_pred HHHHHHHHhCCC-eeeCCh--hHHHHHHHHHH
Confidence 334689999988 555543 46688887654
No 130
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=23.28 E-value=1.6e+02 Score=29.66 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEccCcCCCchhHHHHHHHHHhc--CCceeeeeccccCcCCcccchhHHH
Q 001049 172 NEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGL--GFRHVSLSSALTPMVRAVPRGLTAS 240 (1173)
Q Consensus 172 de~~v~~~~~~l~~~gv~avAV~~l~S~~np~hE~rv~ei~~~~--~~~~Vs~S~ei~p~~~e~eR~~Ttv 240 (1173)
....+.+++++|.++|++.|+|.=+|-+.= .|=..+.+.+.+. +...|.++.-+......|++...++
T Consensus 54 ~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G-~e~~di~~~v~~~~~~~~~i~~g~pLl~~~~d~~~v~~al 123 (127)
T cd03412 54 EVDTPEEALAKLAADGYTEVIVQSLHIIPG-EEYEKLKREVDAFKKGFKKIKLGRPLLYSPEDYEEVAAAL 123 (127)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEeCeeECc-HHHHHHHHHHHHHhCCCceEEEccCCCCCHHHHHHHHHHH
Confidence 345678899999999999999998877664 3334455555543 3445777776665555555554443
No 131
>PRK06033 hypothetical protein; Validated
Probab=23.18 E-value=1.5e+02 Score=27.87 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=23.6
Q ss_pred ceeeccchHHHHHHHHHhcCCCCCCcEEEecCCC
Q 001049 791 PVHLGAMSSTVRWQLKYWRHNLNEGDVLVSNHPC 824 (1173)
Q Consensus 791 p~h~gsm~~~v~~~l~~~~~~l~pGDv~i~NDPy 824 (1173)
-+.+|....+++.++ +|++|||+-.|-+.
T Consensus 12 ~v~Lg~~~i~l~dlL-----~L~~GDVI~L~~~~ 40 (83)
T PRK06033 12 MVVLGRSSMPIHQVL-----RMGRGAVIPLDATE 40 (83)
T ss_pred EEEEecccccHHHHh-----CCCCCCEEEeCCCC
Confidence 356777788888887 79999999998765
No 132
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=23.09 E-value=1.4e+02 Score=27.01 Aligned_cols=45 Identities=33% Similarity=0.380 Sum_probs=28.8
Q ss_pred eeeccchHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCCCCeEEEEeeeeCCeEEEEEe
Q 001049 792 VHLGAMSSTVRWQLKYWRHNLNEGDVLVSNHPCAGGSHLPDITVITPVFDNGKLVFFVA 850 (1173)
Q Consensus 792 ~h~gsm~~~v~~~l~~~~~~l~pGDv~i~NDPy~Gg~Hl~Dv~v~~PVF~~Gelv~~~a 850 (1173)
+.++....+++.++ +|++||++-.+.|... -.+++.+|+.+|++-
T Consensus 14 ~~l~~~~l~l~el~-----~L~~Gdvi~l~~~~~~---------~v~l~v~g~~~~~g~ 58 (77)
T PF01052_consen 14 VELGEASLTLGELL-----NLKVGDVIPLDKPADE---------PVELRVNGQPIFRGE 58 (77)
T ss_dssp EEEEEEEEEHHHHH-----C--TT-EEEECCESST---------EEEEEETTEEEEEEE
T ss_pred EEEEeeEeEHHHHh-----cCCCCCEEEeCCCCCC---------CEEEEECCEEEEEEE
Confidence 44566666777776 7999999999998432 135566888777643
No 133
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=23.04 E-value=1.6e+02 Score=34.07 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEEcc---CcCCCchhHHHHHHHHHhc--CCceeee
Q 001049 171 VNEKTLEPLLKGLLEKGISCLAVVLM---HSYTFPQHEMAVEKLALGL--GFRHVSL 222 (1173)
Q Consensus 171 lde~~v~~~~~~l~~~gv~avAV~~l---~S~~np~hE~rv~ei~~~~--~~~~Vs~ 222 (1173)
+|++++++.++.+.+.|++.|.+|.- +.+.+++.-+++-+.+.+. +-+||..
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpvia 78 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIA 78 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEE
Confidence 78899999999999999999999954 7777777667777777765 4335544
No 134
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.02 E-value=60 Score=41.86 Aligned_cols=20 Identities=40% Similarity=0.370 Sum_probs=17.1
Q ss_pred EEEEeccCccccEEEEecCCc
Q 001049 10 RFCIDRGGTFTDVYAEIPGQL 30 (1173)
Q Consensus 10 rigIDvGGTfTD~v~~~~~g~ 30 (1173)
.|++|+|||.||+-.+. +|+
T Consensus 280 ~i~~DmGGTStDva~i~-~G~ 299 (674)
T COG0145 280 AIVFDMGGTSTDVALII-DGE 299 (674)
T ss_pred EEEEEcCCcceeeeeee-cCc
Confidence 79999999999999884 454
No 135
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=22.53 E-value=3.1e+02 Score=32.49 Aligned_cols=51 Identities=16% Similarity=0.295 Sum_probs=31.5
Q ss_pred HHHHHHHHHHCCCcEEEEEccCcCCCc-hhHHHHHHHHHhcCCceeeeeccccCc
Q 001049 176 LEPLLKGLLEKGISCLAVVLMHSYTFP-QHEMAVEKLALGLGFRHVSLSSALTPM 229 (1173)
Q Consensus 176 v~~~~~~l~~~gv~avAV~~l~S~~np-~hE~rv~ei~~~~~~~~Vs~S~ei~p~ 229 (1173)
+...++.|...||.-|.+..- |.-. ..++.+|..-.++|+ .|++|+|--|.
T Consensus 43 I~hqieal~nsGi~~I~la~~--y~s~sl~~~~~k~y~~~lgV-ei~~s~etepl 94 (371)
T KOG1322|consen 43 ILHQIEALINSGITKIVLATQ--YNSESLNRHLSKAYGKELGV-EILASTETEPL 94 (371)
T ss_pred hHHHHHHHHhCCCcEEEEEEe--cCcHHHHHHHHHHhhhccce-EEEEEeccCCC
Confidence 445677888999999877653 3222 223333333334475 79999998643
No 136
>PTZ00288 glucokinase 1; Provisional
Probab=22.49 E-value=1.4e+02 Score=36.27 Aligned_cols=29 Identities=7% Similarity=-0.043 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 001049 456 DIALGFVNVANETMCRPIRQLTEMKGHETRN 486 (1173)
Q Consensus 456 eaA~gi~~ia~~~Ma~air~~~~~rG~dprd 486 (1173)
+.|..+++.....+++++..+... +||+.
T Consensus 298 ~~A~~al~~f~~~LG~~~~nlal~--l~P~~ 326 (405)
T PTZ00288 298 VAAVKAMKRHYKYLMRLAAEISMQ--FLPLT 326 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HCCCE
Confidence 456678888888888888888865 67876
No 137
>PRK08983 fliN flagellar motor switch protein; Validated
Probab=21.96 E-value=1.9e+02 Score=29.50 Aligned_cols=47 Identities=23% Similarity=0.317 Sum_probs=33.5
Q ss_pred CceeeccchHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCCCCeEEEEeeeeCCeEEEEEe
Q 001049 790 VPVHLGAMSSTVRWQLKYWRHNLNEGDVLVSNHPCAGGSHLPDITVITPVFDNGKLVFFVA 850 (1173)
Q Consensus 790 ip~h~gsm~~~v~~~l~~~~~~l~pGDv~i~NDPy~Gg~Hl~Dv~v~~PVF~~Gelv~~~a 850 (1173)
+-+.+|.....++.++ +|++|||+..|-+..- -..|+.+|+++|++-
T Consensus 55 v~v~LG~t~ltl~dlL-----~L~~GDVI~Ld~~~dd---------pv~v~Vng~~~f~G~ 101 (127)
T PRK08983 55 ISMEVGRSFISIRNLL-----QLNQGSVVELDRVAGE---------PLDVMVNGTLIAHGE 101 (127)
T ss_pred EEEEEecCcccHHHHh-----CCCCCCEEEeCCCCCC---------CEEEEECCEEEEEEE
Confidence 3456788888888888 7999999999987632 124556777766543
No 138
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=21.78 E-value=5.7e+02 Score=29.24 Aligned_cols=116 Identities=13% Similarity=0.141 Sum_probs=73.0
Q ss_pred CceeEEecCCCHHHHHHHHHHHHHCCCcEEEEEccCcCCCchhHHHHHHHHHhc-CCceeeeeccccCcCCcccchhHHH
Q 001049 162 GELVRVVKPVNEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGL-GFRHVSLSSALTPMVRAVPRGLTAS 240 (1173)
Q Consensus 162 g~~g~v~~plde~~v~~~~~~l~~~gv~avAV~~l~S~~np~hE~rv~ei~~~~-~~~~Vs~S~ei~p~~~e~eR~~Ttv 240 (1173)
|.+|-.+-.|-.++..+..+.+++.|++.|-.+- +.-| +.|+++|++.. |++++....-+... |
T Consensus 119 GvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~---PtT~--~eri~~i~~~a~gFIY~vS~~GvTG~-----~----- 183 (263)
T CHL00200 119 GVKGLIIPDLPYEESDYLISVCNLYNIELILLIA---PTSS--KSRIQKIARAAPGCIYLVSTTGVTGL-----K----- 183 (263)
T ss_pred CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEEC---CCCC--HHHHHHHHHhCCCcEEEEcCCCCCCC-----C-----
Confidence 4445677777788899999999999987765544 3334 77899998887 67664333334332 1
Q ss_pred HHhcchHHHHHHHHHHHHHHHhcCCCceEEEEEcCCCccccccccccceecccchhhHHHHHHh
Q 001049 241 VDAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQT 304 (1173)
Q Consensus 241 lNAyl~p~~~~yl~~l~~~L~~~~~~~~l~im~s~GG~~s~~~~~pv~ti~SGPa~Gv~Ga~~l 304 (1173)
..+.+-++++++++++. .+.|+.+ ++|+-+.++++-+.- .|=-|-++|++.+
T Consensus 184 --~~~~~~~~~~i~~ir~~-----t~~Pi~v---GFGI~~~e~~~~~~~--~GADGvVVGSalv 235 (263)
T CHL00200 184 --TELDKKLKKLIETIKKM-----TNKPIIL---GFGISTSEQIKQIKG--WNINGIVIGSACV 235 (263)
T ss_pred --ccccHHHHHHHHHHHHh-----cCCCEEE---ECCcCCHHHHHHHHh--cCCCEEEECHHHH
Confidence 23445566777766652 2567776 899988888653222 2222345566554
No 139
>PLN02914 hexokinase
Probab=21.52 E-value=1.4e+02 Score=37.06 Aligned_cols=18 Identities=33% Similarity=0.515 Sum_probs=16.7
Q ss_pred CEEEEecCCCceEEeeee
Q 001049 313 PLIGFDMGGTSTDVSRYA 330 (1173)
Q Consensus 313 ~~I~~DmGGTStDv~li~ 330 (1173)
..+++|+|||++-|++|+
T Consensus 96 ~fLAlDlGGTNfRV~~V~ 113 (490)
T PLN02914 96 LFYALDLGGTNFRVLRVQ 113 (490)
T ss_pred EEEEEecCCceEEEEEEE
Confidence 589999999999999995
No 140
>PRK00047 glpK glycerol kinase; Provisional
Probab=21.47 E-value=2.4e+02 Score=34.93 Aligned_cols=84 Identities=14% Similarity=0.073 Sum_probs=52.2
Q ss_pred CCCCceEEEEeccCccccEEEEecCCceEEEEEecc--CCCCC-----CCChHHHHHHHHHHHhhCCCCCCCCCCCCCCe
Q 001049 4 VKEEKLRFCIDRGGTFTDVYAEIPGQLEGQVLKLLS--VDPTN-----YDDAPVEGIRRILEEYTGEKIPRTSKIPTDKI 76 (1173)
Q Consensus 4 ~~~~~~rigIDvGGTfTD~v~~~~~g~~~~~~K~~s--t~p~~-----~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~v 76 (1173)
|++.++.||||+|+|.+-++++|.+|+++...+.+. ..|.+ -++.+.+.+..+++++..+ .+.++++|
T Consensus 1 ~~m~~~~lgiD~GTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~-----~~~~~~~I 75 (498)
T PRK00047 1 MMMKKYILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAK-----AGISPDQI 75 (498)
T ss_pred CCccCEEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHH-----cCCChhHe
Confidence 445568999999999999999987777555544321 11211 1223466666666665432 23455678
Q ss_pred eEEEEehhHhhhHhhh
Q 001049 77 EWIRMGTTVATNALLE 92 (1173)
Q Consensus 77 ~~i~hGTT~atNAlle 92 (1173)
..|-.+++..+=.++.
T Consensus 76 ~~Igis~~~~~~v~~D 91 (498)
T PRK00047 76 AAIGITNQRETTVVWD 91 (498)
T ss_pred eEEEEecCcceEEEEE
Confidence 8888887655544444
No 141
>PRK08916 flagellar motor switch protein; Reviewed
Probab=21.31 E-value=1.6e+02 Score=29.58 Aligned_cols=30 Identities=30% Similarity=0.320 Sum_probs=24.7
Q ss_pred CceeeccchHHHHHHHHHhcCCCCCCcEEEecCCC
Q 001049 790 VPVHLGAMSSTVRWQLKYWRHNLNEGDVLVSNHPC 824 (1173)
Q Consensus 790 ip~h~gsm~~~v~~~l~~~~~~l~pGDv~i~NDPy 824 (1173)
+-+.+|....+++.++ +|+||||+-+|-+.
T Consensus 49 Ltv~LG~~~ltl~ELL-----~L~~GDVI~Ld~~~ 78 (116)
T PRK08916 49 VSAVLGRSKMDVGQLL-----KLGPGSVLELDRKV 78 (116)
T ss_pred EEEEEecccccHHHHh-----cCCCCCEEEcCCCC
Confidence 4466788888888888 79999999998765
No 142
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=21.30 E-value=1.5e+02 Score=36.33 Aligned_cols=95 Identities=18% Similarity=0.149 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHHHhhccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEcCch--hhhH
Q 001049 423 DINATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAG--PQHA 500 (1173)
Q Consensus 423 d~~~a~~a~~~ia~~lg~~~~~~~~~~~gl~~eeaA~gi~~ia~~~Ma~air~~~~~rG~dprdf~LvafGGaG--plha 500 (1173)
|+..++.++...+.-+|. ...-+..+...++++=..-.|...++.+....|..++ .+.+-||+. ++..
T Consensus 335 ~~~~~~~~~~~~~~~~Gl--------~~~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~~~~--~i~~~GGga~s~~w~ 404 (454)
T TIGR02627 335 NPENMCEEIQAYCRETNQ--------PIPESDAELARCIFDSLALLYRQVLLELAELRGKPIS--QLHIVGGGSQNAFLN 404 (454)
T ss_pred ChhhhHHHHHHHHHHcCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcC--EEEEECChhhhHHHH
Confidence 665566666432333441 1224678888888888777888888777654466544 345555532 2233
Q ss_pred HHHHHHcCCCEEEECCCCCccchhcccccc
Q 001049 501 CAIARSLGMREVLIHRFCGILSAYGMGLAD 530 (1173)
Q Consensus 501 ~~lA~~lGi~~VivP~~~~v~sA~G~~~ad 530 (1173)
-.+|+.||++ |..+. .-.+|+|+++.-
T Consensus 405 Qi~ADvlg~p-V~~~~--~e~~a~GaA~~a 431 (454)
T TIGR02627 405 QLCADACGIR-VIAGP--VEASTLGNIGVQ 431 (454)
T ss_pred HHHHHHhCCc-eEcCC--chHHHHHHHHHH
Confidence 3589999998 44443 347789987654
No 143
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=21.24 E-value=1.7e+02 Score=34.11 Aligned_cols=47 Identities=17% Similarity=0.066 Sum_probs=30.5
Q ss_pred eEEEEeccCccccEEEEec-CCceEEEEEeccCCCCCCCChHHHHHHHHHHHh
Q 001049 9 LRFCIDRGGTFTDVYAEIP-GQLEGQVLKLLSVDPTNYDDAPVEGIRRILEEY 60 (1173)
Q Consensus 9 ~rigIDvGGTfTD~v~~~~-~g~~~~~~K~~st~p~~~~~~~~~gi~~~l~~~ 60 (1173)
..+| |||||++=+-++.. .++ ....++.++ .|+ ..+.+.|+..+.+.
T Consensus 8 ~Lvg-DIGGTnaRfaLv~~a~~~-~~~~~~~~~--~dy-psle~av~~yl~~~ 55 (320)
T COG0837 8 RLVG-DIGGTNARFALVEIAPAE-PLQAETYAC--ADY-PSLEEAVQDYLSEH 55 (320)
T ss_pred eEEE-ecCCcceEEEEeccCCCC-ccccceecc--cCc-CCHHHHHHHHHHHh
Confidence 4567 99999999988743 333 344455553 344 34677888777664
No 144
>PRK11246 hypothetical protein; Provisional
Probab=21.17 E-value=1.1e+02 Score=34.07 Aligned_cols=79 Identities=20% Similarity=0.340 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhc---ccccc------------------cccccccceecCCCCCeecccC-CCceeeccchHHHHHHHHH
Q 001049 750 AEQMGRTLQRTS---ISTNI------------------KERLDFSCALFGPDGGLVANAP-HVPVHLGAMSSTVRWQLKY 807 (1173)
Q Consensus 750 aeEM~~~l~RtA---~Spii------------------~e~~Dfs~aI~d~~G~lva~~~-~ip~h~gsm~~~v~~~l~~ 807 (1173)
.++|+.+|.|-. .||.+ +|.+=+++.|||++|.++|++. .+ .++..+.-
T Consensus 45 ~e~LarlL~rQ~A~sas~ll~~~n~d~e~L~~lln~La~d~~VlDAsIY~~~G~llA~S~~~~---------~~re~L~L 115 (218)
T PRK11246 45 LEELARTLARQVALSLAPLMRSDSPDEKRIQAILDQLTDESRILDASVYDEQGDLIARSGESV---------NVRDRLAL 115 (218)
T ss_pred HHHHHHHHHHHHHHhhhHHHhccCCcHHHHHHHHHHHhcCCceeeEEEECCCCCEEEecCCCc---------cHHHHhCC
Confidence 566777776643 44555 2334468999999999999874 23 33444421
Q ss_pred hcCCCCCCcEEEecCCCCCCCCCCCeEEEEeeeeCCeEEEEEecc
Q 001049 808 WRHNLNEGDVLVSNHPCAGGSHLPDITVITPVFDNGKLVFFVASR 852 (1173)
Q Consensus 808 ~~~~l~pGDv~i~NDPy~Gg~Hl~Dv~v~~PVF~~Gelv~~~a~~ 852 (1173)
++=.+| +|. . .-++-|||.++.++||.=.+
T Consensus 116 --d~~~~~-------s~~--~----qQiVEPI~~~~~~lGFlRvT 145 (218)
T PRK11246 116 --DGKKAG-------SYF--N----QQIVEPIAGKNGPLGFLRLT 145 (218)
T ss_pred --CCcccc-------ccC--C----CceEEEecCCCCceeEEEEE
Confidence 211223 221 1 35789999999999997554
No 145
>PRK02794 DNA polymerase IV; Provisional
Probab=21.16 E-value=7.8e+02 Score=29.79 Aligned_cols=83 Identities=12% Similarity=0.134 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEEeeeec---CeeEEEEEecccccCCCcccHHHHHHHHHHHHhcc
Q 001049 546 ESVLEVSRREGILSKQVKQKLQEQGFREESITTETYLNLRYE---GTDTAIMVKKRIAEDGSGCGYAVDFEKLFQQEYGF 622 (1173)
Q Consensus 546 ~~~~~~~~~~~~l~~~a~~~l~~~G~~~~~~~~~~~~d~RY~---GQ~~~l~v~~~~~~~~~~~~~~~~F~~~h~~~yg~ 622 (1173)
.+.+.+...+.+|.++....|.+.+.....+++. +||. .....++++.|.. +...|.+..++..++.+
T Consensus 287 ~~~~~l~~~l~~L~~~l~~rL~~~~~~~~~l~l~----l~~~~~~~~~~~~~l~~pt~---~~~~l~~~~~~ll~~~~-- 357 (419)
T PRK02794 287 SDFEDLEPILWRLSEKVSRRLKAAGLAGRTVTLK----LKTADFRLRTRRRTLEDPTQ---LADRIFRTARELLEKET-- 357 (419)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEE----EEECCCCceEEEEECCCCcC---CHHHHHHHHHHHHHhcc--
Confidence 4678899999999999999999999876655544 4553 3344444444421 23456666666666542
Q ss_pred ccCCCcEEEEEEEEEEE
Q 001049 623 KLQNRNILVCDVRVRGI 639 (1173)
Q Consensus 623 ~~~~~~vei~~~rv~~~ 639 (1173)
...+|..+.+++.-.
T Consensus 358 --~~~~vr~igv~~~~l 372 (419)
T PRK02794 358 --DGTAFRLIGIGVSDL 372 (419)
T ss_pred --cCCCEEEEEEEEecC
Confidence 245777666665543
No 146
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=20.99 E-value=2.1e+02 Score=26.29 Aligned_cols=44 Identities=27% Similarity=0.315 Sum_probs=29.7
Q ss_pred eeeccchHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCCCCeEEEEeeeeCCeEEEEE
Q 001049 792 VHLGAMSSTVRWQLKYWRHNLNEGDVLVSNHPCAGGSHLPDITVITPVFDNGKLVFFV 849 (1173)
Q Consensus 792 ~h~gsm~~~v~~~l~~~~~~l~pGDv~i~NDPy~Gg~Hl~Dv~v~~PVF~~Gelv~~~ 849 (1173)
+-+|.....++.++ +|++||++-.|.+... + ..++.+|+++|++
T Consensus 14 ~~Lg~~~itl~ell-----~L~~Gdvi~L~~~~~~-----~----v~l~v~g~~~~~g 57 (77)
T TIGR02480 14 VELGRTRITLGDLL-----KLGEGSVIELDKLAGE-----P----LDILVNGRLIARG 57 (77)
T ss_pred EEEeceEeEHHHHh-----cCCCCCEEEcCCCCCC-----c----EEEEECCEEEEEE
Confidence 44566667777777 7999999999876532 1 2445666666654
No 147
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=20.86 E-value=1.2e+02 Score=38.22 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCCeeEEEE--------ehhHhhhHhhhcCCCcEEEEEccC
Q 001049 50 VEGIRRILEEYTGEKIPRTSKIPTDKIEWIRM--------GTTVATNALLERKGERIALCVTRG 105 (1173)
Q Consensus 50 ~~gi~~~l~~~~~~~~~~~~~~~~~~v~~i~h--------GTT~atNAllerkg~rvglitt~G 105 (1173)
++-+++.|+.+ |. | .+..++ .++| +|+..+.++|+.-|-|||++|++.
T Consensus 42 L~rm~~~L~~L-G~--p----~~~~~l-~vIhVaGTnGKGSt~a~l~siL~~~G~rvGl~tSPh 97 (530)
T PLN02881 42 FDLLFDYLKIL-EL--E----EAISRL-KVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPH 97 (530)
T ss_pred hHHHHHHHHHc-CC--C----chhhcC-CEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEECCCc
Confidence 56677777765 21 1 111344 3666 456779999999999999987665
No 148
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional
Probab=20.86 E-value=1.1e+02 Score=38.54 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=40.8
Q ss_pred ccccccceecCCCCCeecccCCCceeeccchHHHHHHHHHhcCCCCCCcEEEecCCCCCCCCCCCeEEEEeeeeCCeEEE
Q 001049 768 ERLDFSCALFGPDGGLVANAPHVPVHLGAMSSTVRWQLKYWRHNLNEGDVLVSNHPCAGGSHLPDITVITPVFDNGKLVF 847 (1173)
Q Consensus 768 e~~Dfs~aI~d~~G~lva~~~~ip~h~gsm~~~v~~~l~~~~~~l~pGDv~i~NDPy~Gg~Hl~Dv~v~~PVF~~Gelv~ 847 (1173)
|..=+.+.|||++|.++|++.. +..++..+. .|-|-.+ +..-..++-|||.++.++|
T Consensus 84 ~~~vlDAsiY~~~G~lla~s~~--------~~~~r~~l~-------------l~~~~~~--~~~~qQiVePi~~~~~~~G 140 (562)
T PRK14061 84 ESRILDAGVYDEQGDLIARSGE--------SVEVRDRLA-------------LDGKKAG--GYFNQQIVEPIAGKNGPLG 140 (562)
T ss_pred CceEeeeeeecCCCCEEEecCC--------cccHHHHhc-------------CCCcccC--CccceeEEEEecCCCCceE
Confidence 4444788999999999999742 124555552 2333331 1234578999999999999
Q ss_pred EEec
Q 001049 848 FVAS 851 (1173)
Q Consensus 848 ~~a~ 851 (1173)
|.=.
T Consensus 141 flRi 144 (562)
T PRK14061 141 YLRL 144 (562)
T ss_pred EEEE
Confidence 9643
No 149
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=20.75 E-value=1.3e+02 Score=33.37 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=18.1
Q ss_pred EEEEecCCCceEEeeee--ceee
Q 001049 314 LIGFDMGGTSTDVSRYA--GSYE 334 (1173)
Q Consensus 314 ~I~~DmGGTStDv~li~--G~~~ 334 (1173)
+|++|+|.||.++++++ |+..
T Consensus 2 ~lgiDiGTts~K~~l~d~~g~iv 24 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDEDGKIV 24 (245)
T ss_dssp EEEEEECSSEEEEEEEETTSCEE
T ss_pred EEEEEEcccceEEEEEeCCCCEE
Confidence 58999999999999995 7653
No 150
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=20.68 E-value=4e+02 Score=32.51 Aligned_cols=50 Identities=20% Similarity=0.061 Sum_probs=29.5
Q ss_pred EEEeccCccccEEEEecC---CceE-EEEEeccC--CCCCC-----CChHHHHHHHHHHHh
Q 001049 11 FCIDRGGTFTDVYAEIPG---QLEG-QVLKLLSV--DPTNY-----DDAPVEGIRRILEEY 60 (1173)
Q Consensus 11 igIDvGGTfTD~v~~~~~---g~~~-~~~K~~st--~p~~~-----~~~~~~gi~~~l~~~ 60 (1173)
++||+|.|+|-++++|.+ |++. ..+..+.+ .|++. .+.+.+.+.++++++
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 61 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKV 61 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHH
Confidence 589999999999999754 4522 12222211 11221 124677777777765
No 151
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=20.53 E-value=3e+02 Score=31.60 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=46.3
Q ss_pred cCCCHHHHHHHHHHHHHCCCcEEEEEccCcCC---CchhHHHHHHHHHhcCCceeeeecc
Q 001049 169 KPVNEKTLEPLLKGLLEKGISCLAVVLMHSYT---FPQHEMAVEKLALGLGFRHVSLSSA 225 (1173)
Q Consensus 169 ~plde~~v~~~~~~l~~~gv~avAV~~l~S~~---np~hE~rv~ei~~~~~~~~Vs~S~e 225 (1173)
.|.+.+...++++.|.+.|+++|++=++|+.. ||++.+..++.+++.+. .|.++.-
T Consensus 59 ~Pw~R~~~A~ll~~L~~~ga~~I~~Di~f~~~~~~~~~~D~~la~al~~~~~-~vvl~~~ 117 (310)
T PF05226_consen 59 WPWPRSVYARLLDRLAAAGAKAIGFDILFDEPDPSNPEGDQALAEALRRAGN-RVVLASV 117 (310)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEEeeecCCCCCCchHHHHHHHHHHhCCC-eEEEEEe
Confidence 78999999999999999999999999999877 45688889999888753 3555443
No 152
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.28 E-value=2.6e+02 Score=31.85 Aligned_cols=115 Identities=16% Similarity=0.158 Sum_probs=69.5
Q ss_pred CceeEEecCCCHHHHHHHHHHHHHCCCcEEEEEccCcCCCchhHHHHHHHHHhc-CCceeeeeccccCcCCcccchhHHH
Q 001049 162 GELVRVVKPVNEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGL-GFRHVSLSSALTPMVRAVPRGLTAS 240 (1173)
Q Consensus 162 g~~g~v~~plde~~v~~~~~~l~~~gv~avAV~~l~S~~np~hE~rv~ei~~~~-~~~~Vs~S~ei~p~~~e~eR~~Ttv 240 (1173)
|.+|-++-.|..++.++..+.+++.|++-|..|- +.-| +.|++.+.+.. +++++....-+... +
T Consensus 117 GvdGviipDLp~ee~~~~~~~~~~~gl~~I~lva---p~t~--~eri~~i~~~s~gfIY~vs~~GvTG~-----~----- 181 (258)
T PRK13111 117 GVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVA---PTTT--DERLKKIASHASGFVYYVSRAGVTGA-----R----- 181 (258)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeC---CCCC--HHHHHHHHHhCCCcEEEEeCCCCCCc-----c-----
Confidence 4455788888889999999999999999886554 3333 66788887765 66554322222221 1
Q ss_pred HHhcchHHHHHHHHHHHHHHHhcCCCceEEEEEcCCCccccccccccceecccchhhHHHHHHh
Q 001049 241 VDAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGYSQT 304 (1173)
Q Consensus 241 lNAyl~p~~~~yl~~l~~~L~~~~~~~~l~im~s~GG~~s~~~~~pv~ti~SGPa~Gv~Ga~~l 304 (1173)
.-..+-+..+++++.+.. +.|+++ .+|+.+.+++.-+. .+=-|-++|++.+
T Consensus 182 --~~~~~~~~~~i~~vk~~~-----~~pv~v---GfGI~~~e~v~~~~---~~ADGviVGSaiv 232 (258)
T PRK13111 182 --SADAADLAELVARLKAHT-----DLPVAV---GFGISTPEQAAAIA---AVADGVIVGSALV 232 (258)
T ss_pred --cCCCccHHHHHHHHHhcC-----CCcEEE---EcccCCHHHHHHHH---HhCCEEEEcHHHH
Confidence 122344566777665532 456654 78888877754322 2312335555544
No 153
>PLN02362 hexokinase
Probab=20.11 E-value=1.9e+02 Score=36.25 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=16.6
Q ss_pred CEEEEecCCCceEEeeee
Q 001049 313 PLIGFDMGGTSTDVSRYA 330 (1173)
Q Consensus 313 ~~I~~DmGGTStDv~li~ 330 (1173)
..+++|+|||++-|++|+
T Consensus 96 ~fLAlDlGGTNfRV~~V~ 113 (509)
T PLN02362 96 TYYALDLGGTNFRVLRVQ 113 (509)
T ss_pred eEEEEecCCceEEEEEEE
Confidence 589999999999999995
No 154
>PRK04123 ribulokinase; Provisional
Probab=20.04 E-value=3.1e+02 Score=34.38 Aligned_cols=87 Identities=13% Similarity=0.003 Sum_probs=51.5
Q ss_pred CceEEEEeccCccccEEEEe-cCCceEEEEEeccC--------CCCC--C---CChHHHHHHHHHHHhhCCCCCCCCCCC
Q 001049 7 EKLRFCIDRGGTFTDVYAEI-PGQLEGQVLKLLSV--------DPTN--Y---DDAPVEGIRRILEEYTGEKIPRTSKIP 72 (1173)
Q Consensus 7 ~~~rigIDvGGTfTD~v~~~-~~g~~~~~~K~~st--------~p~~--~---~~~~~~gi~~~l~~~~~~~~~~~~~~~ 72 (1173)
+.+.||||+|.|.+-++++| .+|+++...+.+.. .|.+ . +..+.+++.+++++++.+ .+++
T Consensus 2 ~~~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~-----~~~~ 76 (548)
T PRK04123 2 MAYVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKE-----AGVD 76 (548)
T ss_pred CcEEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHH-----cCCC
Confidence 35789999999999999999 48875444443221 0110 1 123466666666554322 2344
Q ss_pred CCCeeEEEEehhHhhhHhhhcCCCcE
Q 001049 73 TDKIEWIRMGTTVATNALLERKGERI 98 (1173)
Q Consensus 73 ~~~v~~i~hGTT~atNAllerkg~rv 98 (1173)
+++|..|-.+++-.+=.++-++|..+
T Consensus 77 ~~~I~aIgis~~~~~~v~~D~~G~pl 102 (548)
T PRK04123 77 PAAVVGIGVDFTGSTPAPVDADGTPL 102 (548)
T ss_pred hhhEEEEEEecccceeEEECCCCCEe
Confidence 56788888887544444444444443
Done!