RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 001049
(1173 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.4 bits (161), Expect = 5e-11
Identities = 86/577 (14%), Positives = 165/577 (28%), Gaps = 195/577 (33%)
Query: 436 SEIN-SYRK----SQDPSVKDMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALA 490
E Y+ +D V + +D+ + M + I E+ H +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDV---------QDMPKSILSKEEID------HIIM 56
Query: 491 CFGGAGPQHACAIARSLGMREVLIHRFCGILSAYGMGLADV-VEEAQEP-YSAVYGPESV 548
R L + + VEE Y +
Sbjct: 57 ----------------SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM----- 95
Query: 549 LEVSRREGILSKQVKQKLQEQGFREESITTETYLNLRYE-GTDTAIMVKKRIAEDGSGCG 607
++ + R+ S+ T Y+ R D + K
Sbjct: 96 ---------------SPIKTE-QRQPSMMTRMYIEQRDRLYNDNQVFAK----------- 128
Query: 608 YAVDFEKLFQQ--EYGFKLQ-NRNILVCDVRVRGIG----VTNILKPQAIEPTSGTPKVE 660
Y V + + + + +L+ +N+L+ V G G ++ ++
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDG--VLGSGKTWVALDVCLSYKVQCKMD----- 181
Query: 661 GHYKVFFNGWHDAPLYKLENLGYGHVMPGPAIIMNGNSTVIVEPNCKAVITKYGNIKIEI 720
+K+F W L NL + P + M ++PN + NIK+ I
Sbjct: 182 --FKIF---W----L----NLKNCNS-PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 721 ESISSTIN-------------IAENIADVVQLSIFNH--------RFMGIAEQMGRTLQR 759
SI + + + N+ + + FN RF + + +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL------ 281
Query: 760 TSISTNIKERLDFSCALFGPDG--GLVANA--------PHV-----PVHL---GAMSS-- 799
S +T LD PD L+ P P L
Sbjct: 282 -SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 800 TVRWQLKYWRH-NLNEGDVLVSNHPCAGGSHLPDITVITP-----VFDNGKLVFFVASRG 853
W W+H N ++ ++ + + V+ P +FD +L F S
Sbjct: 341 LATWD--NWKHVNCDKLTTIIES----------SLNVLEPAEYRKMFD--RLSVFPPS-- 384
Query: 854 HHAEIGGITPGSMPPFSKSI-WEEGAAIKAFKLVEKGIFQEEGITKLLLDPSSEDSAHKI 912
A I P S+ W + +V K L++ ++S I
Sbjct: 385 --AHI--------PTILLSLIWFDVIKSDVMVVVNK--LH----KYSLVEKQPKESTISI 428
Query: 913 PGTRRLQDNLSDLRAQVAANQRGISLIKELIEQYGLK 949
P + +L+ ++ +L + +++ Y +
Sbjct: 429 PS---IYL---ELKVKLENEY---ALHRSIVDHYNIP 456
Score = 53.7 bits (128), Expect = 3e-07
Identities = 89/777 (11%), Positives = 196/777 (25%), Gaps = 326/777 (41%)
Query: 105 GFKDLLQIGNQARPQIF--DLTVSTPSNLYEEVI---EVDERVELVLENEKENQESLVKG 159
+KD+L + A F + ++ + ++ E+D +++ + +
Sbjct: 17 QYKDILSVFEDA----FVDNFDCKDVQDMPKSILSKEEIDH---IIMSKDAVSGTLR--- 66
Query: 160 VSGELVRVVKPVNEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGLGFRH 219
L + E+ ++ ++ +L +Y F
Sbjct: 67 ----LFWTLLSKQEEMVQKFVEEVLRI-----------NYKF------------------ 93
Query: 220 VSLSSALTPMVRAVPRGLTASVDAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLA 279
L S + + R + Y+ + Y + AK NV
Sbjct: 94 --LMSPI----KTEQRQPSMMTRMYIEQRDRLYNDN------QVFAKYNV---------- 131
Query: 280 PESRFSGHKAVLSG-----PAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYAGSYE 334
SR + + PA V+ + G + G +G +
Sbjct: 132 --SRLQPYLKLRQALLELRPAKNVL-----IDG-----------VLG--------SG--K 163
Query: 335 QVLETQIAGAIIQAPQLDINTVAAGGGSNLMFQLGAF--RVG----PESVGAHPGPVCYR 388
+ A + + ++ F + PE+V + Y+
Sbjct: 164 TWV----ALDVCLSYKVQ-----------CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 389 KGGDLAVTDANLILGFVIPDYFPSIFGPNEDQPLDINATREKFQKLASEINSYRKS---- 444
D N D+ +I L I++ + + ++L Y
Sbjct: 209 -------IDPNWTSR---SDHSSNI-------KLRIHSIQAELRRLLKS-KPYENCLLVL 250
Query: 445 ---QDPSVKDMTVEDIALGFVNVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQHAC 501
Q+ L C+ + LT TR
Sbjct: 251 LNVQNAKA----WNAFNLS---------CKIL--LT------TRF--------------- 274
Query: 502 AIARSLGMREVLIHRFCGILSAYGMGLADVVEEAQEPYSAVYGPESVLEVSRREGILSKQ 561
+ D + A + ++ L + +L K
Sbjct: 275 ------------------------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 562 VKQKLQE------QG-----------FREESITTETYLNLRYEGTDTAIMVKKRIAEDGS 604
+ + Q+ R+ T + + ++ + T I + E
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA- 369
Query: 605 GCGYAVDFEKLFQQEYGF----------------------------KLQNRNILVCDVRV 636
++ K+F + F KL +++ +
Sbjct: 370 ------EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 637 RGIGVTNIL----------------------KPQAIEPTSGTPKVEGHYKVFFN--GWHD 672
I + +I P+ + P Y F++ G H
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY--FYSHIGHHL 481
Query: 673 AP------------LY--------KLENLGYGHVMPGPAIIMNGNSTVIVEPNCKAVITK 712
++ K+ + G + +T+ K I
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL-----NTLQQLKFYKPYICD 536
Query: 713 YGNIKIEIESISSTI-----NIAENI-----ADVVQLSIFNHRFMGIAEQMGRTLQR 759
+ E + + I I EN+ D++++++ I E+ + +QR
Sbjct: 537 NDP---KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED-EAIFEEAHKQVQR 589
Score = 42.1 bits (98), Expect = 0.001
Identities = 48/339 (14%), Positives = 91/339 (26%), Gaps = 116/339 (34%)
Query: 1 MGSVKEEKLRFCIDRGGTFTDVYAEIPGQL--EGQVLKLLSVDPTNYDDAPVEGIRRILE 58
M +K E T +Y E +L + QV +V P +R+ L
Sbjct: 95 MSPIKTE----QRQPSMM-TRMYIEQRDRLYNDNQVFAKYNV----SRLQPYLKLRQALL 145
Query: 59 EYTGEK------------------IPRTSKI---PTDKIEWIRMGTTVATNALLERKGER 97
E K + + K+ KI W+ + + +LE
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM---- 201
Query: 98 IALCVTRGFKDLLQIGNQARPQIFDLTVSTPSNLYEEVIEVDERVELVLENEKENQESLV 157
L ++ Q P + SN+ + + + +L+ K + L
Sbjct: 202 -----------LQKLLYQIDPN-WTSRSDHSSNIKLRIHSIQAELRRLLK-SKPYENCL- 247
Query: 158 KGVSGELV-------RVVKPVN------------------------EKTLEPLLKGLLE- 185
LV + N +L+ L
Sbjct: 248 ------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 186 KGISCLAVVLMHSYT-FPQHEMAVEKLALGL-------------GFRHVSLSSALTPMVR 231
+ S L L P+ + L + ++HV+ LT ++
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC-DKLTTIIE 360
Query: 232 AVPRGLTASVDAYLTPV-IKEYLSGFMSKFDEGLAKVNV 269
+S++ L P ++ S F ++
Sbjct: 361 -------SSLNV-LEPAEYRKMFDRL-SVFPPS---AHI 387
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.1 bits (140), Expect = 2e-08
Identities = 97/616 (15%), Positives = 180/616 (29%), Gaps = 187/616 (30%)
Query: 117 RPQI-----FDLTVSTPSNLYEEVIEVDER---------VELVLENEKENQESLVKGVSG 162
RP + + P+ + ++ E+ ++E LV G
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 163 ELVRVVKPVNEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKLALGLGFRHVSL 222
+ +V+P + +L L F + + H +L
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLT--------------EFENCYLEGNDI-------H-AL 104
Query: 223 SSALTPMVRAVPRGLTASVDAYLT-------PVIKEYLSGFMSKFDEGLAKVNVLFMQSD 275
++ L + Y+T P K+ S EG A++ +F
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF---- 160
Query: 276 GGL-APESRFSGHKAVLSGPAGGVVGYSQTLFGLETEKPLIG----------FDMGGTST 324
GG + F L + L+ +T L+G ++ T+
Sbjct: 161 GGQGNTDDYFEE----L-----------RDLY--QTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 325 DVSRYAGSYEQVLETQ--IAGAIIQAPQLDINTVAAGGGSNLMFQLGAFRVGPESVGAHP 382
D + + Q L + + + ++ + QL + V + +G P
Sbjct: 204 DAEKV---FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 383 GPVCYRKGGDLAVTDANLILGFVI------PDY---------------------FPSIFG 415
G + G L+ I + +P+
Sbjct: 261 GELRSYLKG-ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 416 P----------NEDQP---LDI-NATREKFQKLASEINSYRKSQDPSVKDMTVEDIALGF 461
P NE P L I N T+E+ Q ++ NS+ + + + +
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG---------KQVEISL 370
Query: 462 VNVA-NETMCRPIRQLTEMKGHETRNHALACFGGAGPQHACAIARSLGMREVLIHRFCGI 520
VN A N + P + L G G Q I S + +RF
Sbjct: 371 VNGAKNLVVSGPPQSL---YGLNLTLRKAKAPSGLD-QSR--IPFS-ERKLKFSNRF--- 420
Query: 521 L-------SAYGMGLADVVEEAQE-------PYSA------VYGPE--SVLEVSRREGIL 558
L S L + + ++A VY S L R L
Sbjct: 421 LPVASPFHSHL---LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL----RV--L 471
Query: 559 SKQVKQKLQEQGFRE----ESIT--TETYLNLRY-EGTDTAI--MVKKRIAEDGSGCG-- 607
S + +++ + R E+ T T++ L + G + + + + +DG+G
Sbjct: 472 SGSISERIVDCIIRLPVKWETTTQFKATHI-LDFGPGGASGLGVLTHR--NKDGTGVRVI 528
Query: 608 YAVDFEKLFQQEYGFK 623
A + +YGFK
Sbjct: 529 VAGTLDINPDDDYGFK 544
Score = 57.0 bits (137), Expect = 4e-08
Identities = 75/522 (14%), Positives = 147/522 (28%), Gaps = 194/522 (37%)
Query: 9 LRFCIDR-----GGTFTDVYAEIPGQLEGQVLK-------LLSVDPTNYDDAPVEGIRRI 56
L + G F V + E L+ + +D + + +
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE--NDTTLVKTKEL 122
Query: 57 LEEYTGEKIPRTSKIPTDKIEWIRMGTTVATNALLE--RKGE-RIALC------VTRGFK 107
++ Y +I +K P DK + +AL +G ++ F+
Sbjct: 123 IKNYITARI--MAKRPFDK---------KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 108 DLLQIGNQARPQIFDLTVSTPSNLYEEVIEVDER---------VELVLENEKE--NQESL 156
+L + + DL + L E + + + LEN +++ L
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 157 VK-GVSGELVRV-----------VKPVNEKTLEPLLKGLL--EKGISCLAVVLMHSYTFP 202
+ +S L+ V + L LKG +G+ AV + + ++
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL-VTAVAIAETDSWE 290
Query: 203 Q-HEMAVE--KLALGLGFR------HVSLSSAL------------TPMVRAVPRGLTASV 241
+ + +G R + SL ++ +PM+ ++ LT
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML-SI-SNLT--- 345
Query: 242 DAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGGLAPESRFSGHKA-VLSGPAGGVVG 300
+E + +++K + L + + S +G K V+SGP
Sbjct: 346 --------QEQVQDYVNKTNSHLPAGKQVEI---------SLVNGAKNLVVSGPP----- 383
Query: 301 YSQTLFGLET--------------------EKPLIG--FDMGGTSTDV-----SRY-AGS 332
Q+L+GL K F V S +
Sbjct: 384 --QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL------PVASPFHSHLLVPA 435
Query: 333 YEQVLETQIAGAI-IQAPQLDINTVAAGGGSNLMFQLGAFRVGPESVGAHPGPVCY--RK 389
+ + + + + A + I PV Y
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQI------------------------------PV-YDTFD 464
Query: 390 GGDLAVTDANLILG-----FVIPDYFPSI----------FGP 416
G DL V ++ +P + + FGP
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Score = 56.2 bits (135), Expect = 6e-08
Identities = 98/620 (15%), Positives = 187/620 (30%), Gaps = 204/620 (32%)
Query: 538 PYSAVYGP-ESVLEVSRREGILSKQVK----QKLQE--QGF-REESITTETYLNLRYEGT 589
P + +G E VL V ++ Q++ + L E +GF ++ TT L ++ G
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG- 66
Query: 590 DTAIMVKKRIAEDGSGCGYAVDFEKL-------FQQEYGFKLQNRNI------LVCDVRV 636
V + G F+++ F+ Y L+ +I L+ +
Sbjct: 67 ----YVSSLVEPSKVG-----QFDQVLNLCLTEFENCY---LEGNDIHALAAKLLQENDT 114
Query: 637 RGIGVTNILKP--QAIEPTSGTPKVEGHYKVFFNGWHDAPLYKLENLGYGHVMPGPAIIM 694
+ ++K A + P F+ ++ L++ V G A ++
Sbjct: 115 TLVKTKELIKNYITARI-MAKRP---------FDKKSNSALFR-------AVGEGNAQLV 157
Query: 695 N-----GNSTVIVEPNCKAVITKYGNIKIEIESISSTINIAENIADVVQLSIFNHRFMGI 749
GN+ E E+ + T + + D++
Sbjct: 158 AIFGGQGNTDDYFE---------------ELRDLYQTYH--VLVGDLI------------ 188
Query: 750 AEQMGRTLQRTSISTNIKER-----LDFSCALFGPDGGLVANAP------HVPVHLGAMS 798
+ TL +T E+ L+ L P N P +P+ +
Sbjct: 189 -KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS-----NTPDKDYLLSIPISCPLIG 242
Query: 799 STVRWQLKYW-----RHNLNEGDVLVSNHPCAGGSHLPDI---TVITPV------FDNG- 843
QL ++ G++ ++ H + I F +
Sbjct: 243 VI---QLAHYVVTAKLLGFTPGELR--SYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 844 ---KLVFFVASRGHHAEIGGITPGSMPPFS--KSIWEEGAAIKAFKLVEKGIFQEEGITK 898
++FF+ R + A P + P S + E + + L + QE+ +
Sbjct: 298 KAITVLFFIGVRCYEA-----YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ-VQD 351
Query: 899 LL------LDPSSEDSAHKIPGTR------------RLQDNLSDLRAQVAANQRGI--SL 938
+ L + + G + L L +A +Q I S
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 939 IKELIEQYGLKTVQA-----YMTYVQLNAEEAVREMLKSVAAKVSSESAK-------DGE 986
K L V + + A + + + L +++ + DG
Sbjct: 412 RKLKFSNRFL-PVASPFHSHLLV----PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 987 --RNFAAVVGGNVLTSQRITDVVLTAFQACACSQGCMN--NLTFGDST----FGYYETIG 1038
R + G++ +RI D ++ + T +T FG G
Sbjct: 467 DLRVLS----GSIS--ERIVDCIIRL---------PVKWETTTQFKATHILDFG----PG 507
Query: 1039 GGSGAGP----TWDGTSGVQ 1054
G SG G DGT GV+
Sbjct: 508 GASGLGVLTHRNKDGT-GVR 526
Score = 48.9 bits (116), Expect = 1e-05
Identities = 53/345 (15%), Positives = 100/345 (28%), Gaps = 124/345 (35%)
Query: 525 GMGL---------ADVVEEAQEPYSAVYGPESVLEVSRREGILSKQVKQKLQEQGFREES 575
GMG+ DV A + YG S+L++ + + G + +
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYG-FSILDIVINNPV-----NLTIHFGGEKGKR 1683
Query: 576 ITTETYLNLRYE----GTDTAIMVKKRIAEDGSGCGYAVDFEKLFQQEYGFKLQNRNILV 631
I E Y + +E G + K I E + + + L ++ Q + +
Sbjct: 1684 IR-ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF---TQ-PALTL 1738
Query: 632 CDVRVRGIGVTNILKPQAIEPTSGTPKVEGHYKVFFNGWHDAPLYKLENLG-Y------G 684
LK + + P T GH +LG Y
Sbjct: 1739 M-----EKAAFEDLKSKGLIPADAT--FAGH-----------------SLGEYAALASLA 1774
Query: 685 HVMPGPAII----MNGNSTVIVEPNCKAVITKYGNIKIEIESISSTINIAENIADVVQLS 740
VM +++ G + + P + + YG I I ++++ + E + VV+
Sbjct: 1775 DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS-QEALQYVVE-- 1831
Query: 741 IFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVANAPHVPVHLGAMSST 800
+ ++ G ++ + N
Sbjct: 1832 -------RVGKRTGWLVE-------------------------IVN-------------- 1845
Query: 801 VRWQLKYWRHNLNEGDVLVSNHPCAGGSHLPDITVITPVFDNGKL 845
+N+ E V AG L + +T V + KL
Sbjct: 1846 ---------YNV-ENQQYV----AAG--DLRALDTVTNVLNFIKL 1874
Score = 47.7 bits (113), Expect = 3e-05
Identities = 77/483 (15%), Positives = 128/483 (26%), Gaps = 172/483 (35%)
Query: 756 TLQRTSISTNIK---------ERL--DFSCALFGPDGGLVA-NAPHVPVHL--------- 794
TL S+ + +L F+ L P G A + P P L
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 795 --------GAMSSTVRWQLKYWRHN-LNEGDVLVSNHPCAGGSHLPDITVITPVFDNGKL 845
G + L + + L D+ H A + L T V +
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI----HALA--AKLLQENDTTLVKTKELI 123
Query: 846 VFFVASRGHHAEIGGITPGSMPPFSKSIWEEGAAIKAFKLVEKGIF--Q-------EE-- 894
++ +R + S S +LV IF Q EE
Sbjct: 124 KNYITARI-------MAKRPFDKKSNSALFRAVGEGNAQLV--AIFGGQGNTDDYFEELR 174
Query: 895 -------GITKLLLDPSSEDSAHKIPGTRRLQDNLSDLRAQVAANQRGISLIKELI---- 943
+ L+ S+E L + + +G+++++ L
Sbjct: 175 DLYQTYHVLVGDLIKFSAE----------TLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 944 ---EQY-----------GLKTVQA--YMTYVQ---LNAEEAVREMLKS--------VAAK 976
+ Y G+ +Q Y+ + E +R LK V A
Sbjct: 225 TPDKDYLLSIPISCPLIGV--IQLAHYVVTAKLLGFTPGE-LRSYLKGATGHSQGLVTAV 281
Query: 977 VSSESAKDGERNFAAVVGGNVLTSQRITDVVLTAFQACACSQGCMNNLTFGDSTFGYYET 1036
+E+ D +F +V + + F N + S
Sbjct: 282 AIAET--DSWESFFV----SVRKAITV------LFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 1037 IGGGSGAGPTW----DGTS--GVQCHMTNTRMTDPEIFEQRYPVFLHKFGLREKSGGAGL 1090
G P+ + VQ ++ T P K L
Sbjct: 330 NNEGV---PSPMLSISNLTQEQVQDYVNKTNSHLPA----------------GKQVEISL 370
Query: 1091 HRGGDGLVREIEFRRPVVVS---------ILSERRVHAPRGLKGGKDGARGANYLITKDK 1141
G + +VVS L+ R+ AP GL D +R I +
Sbjct: 371 VNG----------AKNLVVSGPPQSLYGLNLTLRKAKAPSGL----DQSR-----IPFSE 411
Query: 1142 RKV 1144
RK+
Sbjct: 412 RKL 414
Score = 45.0 bits (106), Expect = 2e-04
Identities = 58/334 (17%), Positives = 100/334 (29%), Gaps = 106/334 (31%)
Query: 72 PTDKIEWIRMGTTVATNALLERKGERIALCVTRG-----FKD--------LLQIG---NQ 115
P + +++ G T + L+ A+ + F L IG +
Sbjct: 260 PGELRSYLK-GATGHSQGLV------TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Query: 116 ARPQIFDLTVSTPSNLYEEVIEVDERVE---LVLENEKENQ-ESLVKGVSGELVRVVKPV 171
A P S P ++ E+ +E +E V L + N + Q + V + L P
Sbjct: 313 AYPNT-----SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL-----PA 362
Query: 172 NEKTLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAV-----EKL-ALGLGFRHVSLSSA 225
++ + + L++ ++ V + L L L R S
Sbjct: 363 GKQ----------------VEISLVNG---AKN--LVVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 226 L----TPM----VRAVPRGLTASVDAYLTPVIKEYLSGFMSKFDEGLAKVNVLFMQSDGG 277
L P ++ R L + P L ++ L K NV F D
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVAS-----PFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 278 LAPESRFSGHKAVLSGPAGGVVGYSQTLFGLETEKPL-------------IGFDMGGTST 324
+ F G L +G + + + P+ + F GG S
Sbjct: 457 IPVYDTFDGS--DLRVLSGSIS---ERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS- 510
Query: 325 DVSRYAGSYEQVLETQIAGA---IIQAPQLDINT 355
+ + G +I A LDIN
Sbjct: 511 GLGV-------LTHRNKDGTGVRVIVAGTLDINP 537
Score = 40.0 bits (93), Expect = 0.006
Identities = 40/297 (13%), Positives = 76/297 (25%), Gaps = 118/297 (39%)
Query: 1 MG--------SVKE----------EKLRFCIDRGGTFTDVYAEIPGQL-------EGQVL 35
MG + ++ + F I D+ P L +G+ +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSI------LDIVINNPVNLTIHFGGEKGKRI 1684
Query: 36 KLLSVDPTNYD----DAPVEGIRRILEEYTGEKIPRTSKI----PTDKIEW-----IRMG 82
+ NY + V+G + E+ E ++ + +
Sbjct: 1685 R------ENYSAMIFETIVDG-KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 83 TT-VATNALLERK--------------GERIALCVTRG---FKDLLQIGNQARPQIFDLT 124
A L+ K GE AL + L+++
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV------------ 1785
Query: 125 VSTPSNLYEEVIEVDE--------------RVELVLENEKENQESLVKGVSGELVRVVKP 170
V + + DE RV E + +V+ V +V+
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL--QYVVERVGKRTGWLVEI 1843
Query: 171 VN------------EK----TLEPLLKGLLEKGISCLAVVLMHSYTFPQHEMAVEKL 211
VN + T+ +L + + I + L S + E L
Sbjct: 1844 VNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE--LQKSLSL---EEVEGHL 1895
Score = 38.1 bits (88), Expect = 0.021
Identities = 36/215 (16%), Positives = 58/215 (26%), Gaps = 73/215 (33%)
Query: 392 DLAVTDANLI--LGFVI-------PDYFPSIFGPNEDQPLDINATREKFQKLASEINSYR 442
+ A D + GF I P FG + + + RE + + E
Sbjct: 1647 NRA--DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI-----RENYSAMIFETIVDG 1699
Query: 443 KSQDPSVKDMTVEDI--------------------ALGFVNVANETMCRPIRQLTEMK-- 480
K + + E AL + A ++K
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA---------AFEDLKSK 1750
Query: 481 ----------GH---ETRNHALACFGGAGP-QHACAIARSLGM-REVLIHRFCGILSAYG 525
GH E ALA + + GM +V + R S YG
Sbjct: 1751 GLIPADATFAGHSLGE--YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG 1808
Query: 526 MG-------LADVVEEAQEPYSAVYGPES--VLEV 551
M A +EA + G + ++E+
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Score = 37.3 bits (86), Expect = 0.034
Identities = 43/293 (14%), Positives = 90/293 (30%), Gaps = 101/293 (34%)
Query: 748 GIAEQ-MGRTLQRTSISTNIKERLDFSCALFGPDGG-----LVANAP-HVPVHLGAMSST 800
G EQ MG L +TS + ++ + + F G +V N P ++ +H G
Sbjct: 1625 GSQEQGMGMDLYKTSKA--AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG- 1681
Query: 801 VRWQLKYWRHNLNEGDVLVSNHPCAGGSHLPDITVITPVFDNGKLVFFVASRGHHAEIGG 860
K R N + ++ G +F EI
Sbjct: 1682 -----KRIRENYSA---MIFETIVDGK------LKTEKIFK---------------EIN- 1711
Query: 861 ITPGSMPPFSKSIWE--EGA---------AIKAFKLVEKGIFQ---EEGITKLLLDPS-- 904
+ + +G A+ L+EK F+ +G+ +
Sbjct: 1712 ------EHSTSYTFRSEKGLLSATQFTQPAL--T-LMEKAAFEDLKSKGLIP---ADATF 1759
Query: 905 ---S--EDSA-HKIPGTRRLQDNLSDLRAQVAANQRGISLIKELIEQ-------YGLKTV 951
S E +A + ++ + + RG+ ++ + + YG+ +
Sbjct: 1760 AGHSLGEYAALASLADVMSIESLVEVVF------YRGM-TMQVAVPRDELGRSNYGMIAI 1812
Query: 952 QAYMTYVQLNAEEAVREMLKSVAAKVSS--ESAKDGERNFAA-----VVGGNV 997
+ +EA++ +++ V + E N+ V G++
Sbjct: 1813 NPGRVAASFS-QEALQYVVERVGKRTGWLVEIV-----NYNVENQQYVAAGDL 1859
Score = 31.6 bits (71), Expect = 2.0
Identities = 51/276 (18%), Positives = 83/276 (30%), Gaps = 102/276 (36%)
Query: 196 MHSY-TFP--QH--EMAVEKLALGLGFRHVSLSSALTPMVRAVPRGLT------------ 238
M Y T Q A GF ++ +V P LT
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGF-------SILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 239 ---------ASVDAYLT--PVIK---EYLSGFMSKFDEG-----------LAKVNV-LF- 271
VD L + K E+ + + + ++G L + F
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 272 -MQSDGGLAPESRFSGH-----KAVLSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTD 325
++S G + ++ F+GH A L+ A + +E+ L+ +
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYAA-LASLAD--------VMSIES---LV---------E 1784
Query: 326 VSRYAGSYEQVL----ETQIAGAIIQAPQLDINTVAAGGGSNLMFQLGAFRVGPESVGAH 381
V Y G QV E + + A ++ VAA A + E VG
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIA--INPGRVAASFSQE------ALQYVVERVGKR 1836
Query: 382 PGPVC-----------YRKGGDL-AVTDANLILGFV 405
G + Y GDL A+ +L F+
Sbjct: 1837 TGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFI 1872
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.4 bits (88), Expect = 0.003
Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 15/44 (34%)
Query: 758 QRTSISTNIKERLDFSCALFGPDGGLVANAPHVPVHLGAMSSTV 801
++ ++ ++L S L+ D +AP + A+ +T+
Sbjct: 18 EKQAL-----KKLQASLKLYADD-----SAPAL-----AIKATM 46
Score = 35.3 bits (80), Expect = 0.037
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 6/30 (20%)
Query: 29 QLEGQVLKLLSVDPTNYDDAPVEGIRRILE 58
+L+ LKL + D AP I+ +E
Sbjct: 24 KLQAS-LKLYA--D---DSAPALAIKATME 47
Score = 33.0 bits (74), Expect = 0.25
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 429 EK--FQKLASEINSYRKSQDPSVK-DMTVE 455
EK +KL + + Y P++ T+E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
Score = 30.3 bits (67), Expect = 2.0
Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 2/18 (11%)
Query: 413 IFGPNEDQP-LDINATRE 429
++ + P L I AT E
Sbjct: 31 LYAD-DSAPALAIKATME 47
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage,
CAGE-like protein, plant, iron, metal-binding,
oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A
Length = 212
Score = 30.4 bits (69), Expect = 2.8
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 844 KLVFFVASRGHHAEIGGITPGSMPPFSKSIWEEGAAIKAFKLVEKGIFQEEGITKLLLD 902
KL+ + RG ++ I MP ++G A+ A E + E+ + LL+
Sbjct: 97 KLMEYQNKRGGKVKLQSI---VMPLSDFDHADKGDALHAM---ELALSLEKLTNEKLLN 149
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural
genomics, midwest CEN structural genomics (MCSG),
PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis}
PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Length = 217
Score = 29.2 bits (65), Expect = 6.2
Identities = 14/142 (9%), Positives = 42/142 (29%), Gaps = 14/142 (9%)
Query: 717 KIEIESISSTINIAENIADVVQLSIFNHRFM--GIAEQMGRTLQRTSISTNIKERLDF-- 772
I E + + + I ++ + R + + + +++ D
Sbjct: 9 TIAAEHKQEASVLLNLHRNKINYLIGETMARMTSLSIAIDRPVDIKKMQSILEKTFDSEP 68
Query: 773 ---SCALFGPDGGLVANAPHVPVHLGAMSSTVRWQLKYWRHNLNEGDVLVSNHPCAGGSH 829
G + A+ + ++ R ++ ++S+ + +
Sbjct: 69 RFSGLYFLNAKGDVTASTTELKTK---VNLADR---SFFIKAKETKKTVISDSYSSRITG 122
Query: 830 LPDITVITPVFD-NGKLVFFVA 850
P T+ PV D + ++
Sbjct: 123 QPIFTICVPVLDSKRNVTDYLV 144
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 30.0 bits (68), Expect = 6.8
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 521 LSAYGMGLADVVEEAQEPYSAVYGPESVLEVSRREGILSKQVKQKLQEQGFRE 573
L ++ A+ EE P PE +L+ R G+ S++V Q+ ++ G +
Sbjct: 52 LESHDGHDAEEEEEEATPGGGRVVPEDMLQTDTRVGLTSEEVVQRRRKYGLNQ 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.398
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 18,204,432
Number of extensions: 1177882
Number of successful extensions: 2705
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2689
Number of HSP's successfully gapped: 28
Length of query: 1173
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1069
Effective length of database: 3,798,009
Effective search space: 4060071621
Effective search space used: 4060071621
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.5 bits)