RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 001049
         (1173 letters)



>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA
           probable tRNA-binding arm {Staphylococcus aureus [TaxId:
           1280]}
          Length = 65

 Score = 30.9 bits (70), Expect = 0.090
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 893 EEGITKLLLDPSSEDSAHKIPGTRRLQDNLSDLRAQVAANQRGISLIKELIEQYG 947
            + + K L D        K P  ++  +   +L+ Q+ AN++ I   K L E++G
Sbjct: 16  NKDLNKALKDIE------KRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQEEHG 64


>d2p7ja2 d.110.6.2 (A:9-180) GGDEF family protein VP0354 {Vibrio
           parahaemolyticus [TaxId: 670]}
          Length = 172

 Score = 30.6 bits (68), Expect = 0.68
 Identities = 14/137 (10%), Positives = 41/137 (29%), Gaps = 12/137 (8%)

Query: 722 SISSTINIAENIADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFS-CALFGPD 780
             ++  +  E I+D++  S   + ++    +   T+     S+  + +  +         
Sbjct: 20  EYNNIQDQIETISDLLGHSQSLYDYLREPSKANLTILENMWSSVARNQKLYKQIRFLDTS 79

Query: 781 GGLVANAPHVPVHLGAMSSTVRWQLK---YWRH--NLNEGDVLVSN------HPCAGGSH 829
           G       +      A  S +        Y+++  +L+   +                  
Sbjct: 80  GTEKVRIKYDFKTSIAGPSLILRDKSAREYFKYAQSLDNEQISAWGIELERDKGELVYPL 139

Query: 830 LPDITVITPVFDNGKLV 846
            P + ++ P+  N    
Sbjct: 140 SPSLRILMPISVNDVRQ 156


>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human
           (Homo sapiens), pr-1 [TaxId: 9606]}
          Length = 152

 Score = 28.9 bits (64), Expect = 2.4
 Identities = 17/113 (15%), Positives = 42/113 (37%), Gaps = 10/113 (8%)

Query: 862 TPGSMPPFSKSIWEEGAAI---KAFKLVEKGIFQEEGITKLLLDPSSEDSAHKIPGTRRL 918
           T  ++  F + + + G            +  + ++EGI   +LD   +D     P  + +
Sbjct: 18  TNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIH--VLDWPFDD--GAPPSNQIV 73

Query: 919 QDNLSDLRAQVAANQRGISLI--KELIEQYGLKTVQAYMTYVQLNAEEAVREM 969
            D LS ++ +          +     + +  +  V   +    +  E+AV+ +
Sbjct: 74  DDWLSLVKIKFREEPGCCIAVHCVAGLGRAPV-LVALALIEGGMKYEDAVQFI 125


>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein
           Gga3 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 90

 Score = 27.4 bits (61), Expect = 3.4
 Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 6/56 (10%)

Query: 106 FKDLLQIGNQARPQIFDLTVSTPSN--LYEEVIEVDERVELVLENEKENQESLVKG 159
            K+L       R  +F L   T  N     ++++  + +  V+ + K     +++G
Sbjct: 38  MKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYKT----IIEG 89


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 29.0 bits (64), Expect = 4.0
 Identities = 23/160 (14%), Positives = 42/160 (26%), Gaps = 8/160 (5%)

Query: 65  IPRTSKIPTDKIEWIRMGTTVATNALLERKGERIALCVTRGFKDLLQIGNQARPQIFDLT 124
             R   +  D+   +    T     L ++  E     V+     L +I   A   + D T
Sbjct: 181 TSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYT 240

Query: 125 VSTPSNLYEEVIEVDERVELVLENEKENQESLVKGVSGELVRVVKPVNEKTLEPLLKGLL 184
                  +  V  +          +          V G L   ++ +  K  EP     +
Sbjct: 241 YYFVPAPWLSVKLLRLLQCYPPPEDPA--------VRGRLTECLETILNKAQEPPKSKKV 292

Query: 185 EKGISCLAVVLMHSYTFPQHEMAVEKLALGLGFRHVSLSS 224
           +   +  AV+         H+     L          L  
Sbjct: 293 QHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQH 332


>d1e9ga_ b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 284

 Score = 28.8 bits (64), Expect = 4.2
 Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 27/65 (41%)

Query: 663 YKVFFNG-------WHDAPLYKLENLGYGHVMPGPAIIMNGNSTVIVEPNCKAVITKYGN 715
           YKV+          +HD PLY  +               N    ++VE      I ++ N
Sbjct: 15  YKVYIEKDGKPVSAFHDIPLYADKE--------------NNIFNMVVE------IPRWTN 54

Query: 716 IKIEI 720
            K+EI
Sbjct: 55  AKLEI 59


>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid
           3/5-O-methyltransferase {Alfalfa (Medicago sativa)
           [TaxId: 3879]}
          Length = 107

 Score = 27.1 bits (60), Expect = 4.3
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 488 ALACFGGAGPQHACAIARSLGMRE----VLIHRFCGILSAYGMGLADVVEEAQEPYSAVY 543
            +A  G         IA  L        V++ R   +L+ Y +    V  +       +Y
Sbjct: 35  IIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLY 94

Query: 544 GPESV 548
           G  +V
Sbjct: 95  GLATV 99


>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB
           {Streptomyces purpurascens [TaxId: 1924]}
          Length = 92

 Score = 27.0 bits (60), Expect = 4.5
 Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 2/47 (4%)

Query: 494 GAGPQHACAIARSLGMREVLIHRFCGILSAYGMGLADVVEEAQEPYS 540
            AG      +A         + R    L+   +G+ +  E+   P  
Sbjct: 37  LAGADTLAGLADRTDTHPQALSRLVRHLTV--VGVLEGGEKQGRPLR 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,329,792
Number of extensions: 210874
Number of successful extensions: 585
Number of sequences better than 10.0: 1
Number of HSP's gapped: 585
Number of HSP's successfully gapped: 13
Length of query: 1173
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1078
Effective length of database: 1,103,246
Effective search space: 1189299188
Effective search space used: 1189299188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.7 bits)