Your job contains 1 sequence.
>001050
MDSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFD
SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT
YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM
KGVEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVR
LVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNIL
FASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARF
LGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLY
GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR
RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQ
LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR
DELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCC
TAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQA
IGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVA
VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS
KIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDG
KNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR
QTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYD
GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME
RDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSG
DDIVKANVPYGAKLLCQELFSMGITLKFDTEFC
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001050
(1173 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2095233 - symbol:NRPD2A "nuclear RNA polymeras... 4120 0. 1
GENEDB_PFALCIPARUM|PFB0715w - symbol:PFB0715w "DNA-direct... 952 3.0e-159 2
UNIPROTKB|O96236 - symbol:PFB0715w "DNA-directed RNA poly... 952 3.0e-159 2
CGD|CAL0004145 - symbol:orf19.3349 species:5476 "Candida ... 891 4.7e-159 2
UNIPROTKB|Q5A8Y5 - symbol:RPB140 "DNA-directed RNA polyme... 891 4.7e-159 2
POMBASE|SPAC23G3.01 - symbol:rpb2 "RNA polymerase II comp... 866 7.6e-158 3
SGD|S000005677 - symbol:RPB2 "RNA polymerase II second la... 927 3.9e-155 2
ASPGD|ASPL0000039770 - symbol:AN9120 species:162425 "Emer... 853 3.9e-155 4
DICTYBASE|DDB_G0288257 - symbol:rpb2 "RNA polymerase II c... 1487 2.0e-152 1
TAIR|locus:2119013 - symbol:NRPB2 species:3702 "Arabidops... 1452 1.0e-148 1
UNIPROTKB|F1NCB0 - symbol:POLR2B "DNA-directed RNA polyme... 1323 4.7e-135 1
FB|FBgn0262955 - symbol:RpII140 "RNA polymerase II 140kD ... 1249 3.3e-127 1
WB|WBGene00016140 - symbol:rpb-2 species:6239 "Caenorhabd... 1238 4.8e-126 1
UNIPROTKB|A5PJW8 - symbol:POLR2B "DNA-directed RNA polyme... 1236 7.8e-126 1
UNIPROTKB|E2RNN5 - symbol:POLR2B "DNA-directed RNA polyme... 1236 7.8e-126 1
UNIPROTKB|I3LGP4 - symbol:POLR2B "DNA-directed RNA polyme... 1236 7.8e-126 1
UNIPROTKB|C9J2Y9 - symbol:POLR2B "DNA-directed RNA polyme... 1235 9.9e-126 1
UNIPROTKB|P30876 - symbol:POLR2B "DNA-directed RNA polyme... 1235 9.9e-126 1
RGD|1309477 - symbol:Polr2b "polymerase (RNA) II (DNA dir... 1235 9.9e-126 1
UNIPROTKB|C9J4M6 - symbol:POLR2B "DNA-directed RNA polyme... 1235 9.9e-126 1
MGI|MGI:2388280 - symbol:Polr2b "polymerase (RNA) II (DNA... 1231 2.6e-125 1
UNIPROTKB|F1P4F2 - symbol:POLR2B "DNA-directed RNA polyme... 1223 1.9e-124 1
ZFIN|ZDB-GENE-030131-2887 - symbol:polr3b "polymerase (RN... 1075 3.5e-122 2
SGD|S000005733 - symbol:RET1 "Second-largest subunit of R... 1091 9.4e-122 2
UNIPROTKB|E1BRJ4 - symbol:POLR3B "DNA-directed RNA polyme... 1072 3.2e-121 2
MGI|MGI:1917678 - symbol:Polr3b "polymerase (RNA) III (DN... 1069 8.4e-121 2
RGD|1565311 - symbol:Polr3b "polymerase (RNA) III (DNA di... 1069 8.4e-121 2
UNIPROTKB|E1BPX6 - symbol:POLR3B "Uncharacterized protein... 1067 1.4e-120 2
UNIPROTKB|Q9NW08 - symbol:POLR3B "DNA-directed RNA polyme... 1066 1.7e-120 2
UNIPROTKB|E2RHZ2 - symbol:POLR3B "DNA-directed RNA polyme... 1065 2.2e-120 2
CGD|CAL0002357 - symbol:orf19.5847 species:5476 "Candida ... 1113 5.9e-120 2
FB|FBgn0004463 - symbol:RpIII128 "RNA polymerase III 128k... 1107 8.5e-119 2
POMBASE|SPAC4G9.08c - symbol:rpc2 "DNA-directed RNA polym... 1109 1.1e-116 2
ZFIN|ZDB-GENE-041008-1 - symbol:polr2b "polymerase (RNA) ... 1130 1.3e-114 1
TAIR|locus:2153323 - symbol:NRPC2 "nuclear RNA polymerase... 1031 3.0e-110 2
ASPGD|ASPL0000054387 - symbol:AN0321 species:162425 "Emer... 1023 2.1e-107 2
GENEDB_PFALCIPARUM|PFL0330c - symbol:PFL0330c "DNA-direct... 542 3.0e-104 5
UNIPROTKB|Q8I5X9 - symbol:PFL0330c "DNA-directed RNA poly... 542 3.0e-104 5
DICTYBASE|DDB_G0288449 - symbol:rpc2 "RNA polymerase III,... 791 5.2e-101 2
WB|WBGene00017300 - symbol:rpc-2 species:6239 "Caenorhabd... 860 3.8e-91 2
UNIPROTKB|Q9H9Y6 - symbol:POLR1B "DNA-directed RNA polyme... 728 4.7e-85 3
UNIPROTKB|F5H643 - symbol:POLR1B "DNA-directed RNA polyme... 728 7.1e-85 2
UNIPROTKB|F5GZX4 - symbol:POLR1B "DNA-directed RNA polyme... 728 9.2e-85 3
UNIPROTKB|F1SUA2 - symbol:POLR1B "DNA-directed RNA polyme... 731 1.3e-84 3
UNIPROTKB|E2REX8 - symbol:POLR1B "DNA-directed RNA polyme... 737 7.8e-83 2
UNIPROTKB|F8W898 - symbol:POLR1B "DNA-directed RNA polyme... 728 1.7e-77 2
POMBASE|SPBP23A10.07 - symbol:rpa2 "DNA-directed RNA poly... 711 2.5e-74 3
RGD|620822 - symbol:Polr1b "polymerase (RNA) I polypeptid... 716 1.4e-72 2
UNIPROTKB|O54888 - symbol:Polr1b "DNA-directed RNA polyme... 716 1.4e-72 2
DICTYBASE|DDB_G0293560 - symbol:rpa2 "RNA polymerase I, s... 635 1.6e-72 2
MGI|MGI:108014 - symbol:Polr1b "polymerase (RNA) I polype... 712 2.1e-72 2
UNIPROTKB|A6QLS0 - symbol:POLR1B "DNA-directed RNA polyme... 718 4.5e-72 2
ZFIN|ZDB-GENE-040426-1598 - symbol:polr1b "polymerase (RN... 714 1.0e-71 2
UNIPROTKB|F1SPQ0 - symbol:LOC100737037 "DNA-directed RNA ... 685 2.2e-71 2
UNIPROTKB|F1NLV9 - symbol:F1NLV9 "DNA-directed RNA polyme... 699 3.8e-70 2
ASPGD|ASPL0000012082 - symbol:AN3933 species:162425 "Emer... 635 3.2e-68 4
CGD|CAL0002109 - symbol:RPA135 species:5476 "Candida albi... 646 8.5e-68 4
SGD|S000006214 - symbol:RPA135 "RNA polymerase I second l... 626 1.5e-66 4
TAIR|locus:2019272 - symbol:NRPA2 "nuclear RNA polymerase... 587 4.1e-66 4
FB|FBgn0003278 - symbol:RpI135 "RNA polymerase I 135kD su... 541 4.9e-62 2
WB|WBGene00008781 - symbol:rpoa-2 species:6239 "Caenorhab... 539 9.9e-58 4
GENEDB_PFALCIPARUM|PF11_0358 - symbol:PF11_0358 "DNA-dire... 341 1.3e-55 5
UNIPROTKB|Q8II17 - symbol:PF11_0358 "DNA-directed RNA pol... 341 1.3e-55 5
UNIPROTKB|I3LGN1 - symbol:LOC100737037 "DNA-directed RNA ... 566 8.2e-54 1
UNIPROTKB|F8VRE2 - symbol:POLR3B "DNA-directed RNA polyme... 437 1.3e-40 2
TIGR_CMR|CHY_2318 - symbol:CHY_2318 "DNA-directed RNA pol... 308 4.5e-37 8
TIGR_CMR|DET_0603 - symbol:DET_0603 "DNA-directed RNA pol... 181 4.1e-34 7
TIGR_CMR|BA_0102 - symbol:BA_0102 "DNA-directed RNA polym... 279 6.7e-34 7
TIGR_CMR|CBU_0231 - symbol:CBU_0231 "DNA-directed RNA pol... 188 2.7e-32 6
TIGR_CMR|CJE_0528 - symbol:CJE_0528 "DNA-directed RNA pol... 200 4.4e-32 7
UNIPROTKB|P60281 - symbol:rpoB "DNA-directed RNA polymera... 172 2.9e-31 6
TIGR_CMR|ECH_0952 - symbol:ECH_0952 "DNA-directed RNA pol... 183 3.9e-31 6
UNIPROTKB|P0A8V2 - symbol:rpoB "RNA polymerase, beta subu... 192 6.5e-31 7
UNIPROTKB|P0A680 - symbol:rpoB "DNA-directed RNA polymera... 173 7.7e-30 6
TIGR_CMR|SO_0224 - symbol:SO_0224 "DNA-directed RNA polym... 189 1.1e-29 7
UNIPROTKB|H7C0D9 - symbol:POLR1B "DNA-directed RNA polyme... 340 1.4e-29 1
TIGR_CMR|GSU_2863 - symbol:GSU_2863 "DNA-directed RNA pol... 187 7.1e-29 6
UNIPROTKB|Q9KV30 - symbol:rpoB "DNA-directed RNA polymera... 179 2.0e-28 7
TIGR_CMR|VC_0328 - symbol:VC_0328 "DNA-directed RNA polym... 179 2.0e-28 7
TIGR_CMR|NSE_0678 - symbol:NSE_0678 "DNA-directed RNA pol... 180 3.5e-28 7
TIGR_CMR|APH_1024 - symbol:APH_1024 "DNA-directed RNA pol... 195 2.0e-26 5
TIGR_CMR|SPO_3508 - symbol:SPO_3508 "DNA-directed RNA pol... 212 1.0e-25 7
UNIPROTKB|P0C501 - symbol:rpoB "DNA-directed RNA polymera... 231 4.1e-24 5
UNIPROTKB|P0C502 - symbol:rpoB "DNA-directed RNA polymera... 231 4.1e-24 5
UNIPROTKB|P0C503 - symbol:rpoB "DNA-directed RNA polymera... 231 4.1e-24 5
UNIPROTKB|Q6ENI4 - symbol:rpoB "DNA-directed RNA polymera... 231 4.1e-24 5
UNIPROTKB|F1NRJ5 - symbol:F1NRJ5 "Uncharacterized protein... 250 3.9e-20 2
TIGR_CMR|CPS_4769 - symbol:CPS_4769 "DNA-directed RNA pol... 176 1.8e-16 5
UNIPROTKB|I3L6M3 - symbol:LOC100737037 "Uncharacterized p... 215 3.0e-16 1
UNIPROTKB|P21421 - symbol:rpoB "DNA-directed RNA polymera... 137 2.4e-13 4
UNIPROTKB|I3LR52 - symbol:I3LR52 "Uncharacterized protein... 114 1.8e-05 1
>TAIR|locus:2095233 [details] [associations]
symbol:NRPD2A "nuclear RNA polymerase D2A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0031047
"gene silencing by RNA" evidence=IMP] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IDA;IPI] [GO:0005720 "nuclear
heterochromatin" evidence=IDA] [GO:0006306 "DNA methylation"
evidence=IMP;IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IDA;IPI] [GO:0030880 "RNA polymerase
complex" evidence=IPI] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0050776 "regulation of immune response"
evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0050776 GO:GO:0006355 GO:GO:0050832
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 EMBL:AP000377
GO:GO:0006351 UniGene:At.37653 GO:GO:0030422 GO:GO:0006306
GO:GO:0003899 GO:GO:0000418 GO:GO:0000419 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 EMBL:AY862891 EMBL:AY935711 EMBL:AK176111
IPI:IPI00546801 RefSeq:NP_001189957.1 RefSeq:NP_189020.2
ProteinModelPortal:Q9LK40 SMR:Q9LK40 STRING:Q9LK40 PaxDb:Q9LK40
PRIDE:Q9LK40 EnsemblPlants:AT3G23780.1 EnsemblPlants:AT3G23780.2
GeneID:821960 KEGG:ath:AT3G23780 GeneFarm:4224 TAIR:At3g23780
InParanoid:Q9LK40 KO:K16252 OMA:CRICESA PhylomeDB:Q9LK40
ProtClustDB:CLSN2681572 Genevestigator:Q9LK40 Uniprot:Q9LK40
Length = 1172
Score = 4120 (1455.4 bits), Expect = 0., P = 0.
Identities = 781/1175 (66%), Positives = 931/1175 (79%)
Query: 9 TDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE 68
T +L +LGE FL++FC+KAA SFF++YGL+SHQ+NSYN FI++GLQ F SFGE +VE
Sbjct: 18 TGEINLSELGEGFLQSFCKKAATSFFDKYGLISHQLNSYNYFIEHGLQNVFQSFGEMLVE 77
Query: 69 PGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVK 128
P +D KK + +WRYA+++FG+VT++KP+FF+ + E + P HARLQNMTYS+R+KV
Sbjct: 78 PSFDVVKKKDNDWRYATVKFGEVTVEKPTFFSDD--KELEFLPWHARLQNMTYSARIKVN 135
Query: 129 VQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM--KGVE-- 184
VQ +V+ V SDKFKTG++ Y++K++L + +I+IG IPVMVKS LC KG E
Sbjct: 136 VQVEVFKNTVVKSDKFKTGQDNYVEKKILDVKKQDILIGSIPVMVKSILCKTSEKGKENC 195
Query: 185 -KGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVD 243
KGDC FD GGYF+IKGAEKVF+AQEQ+C KRLW+SNS WTV+++SENKRNR IVRL +
Sbjct: 196 KKGDCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISNSP-WTVSFRSENKRNRFIVRLSE 254
Query: 244 MSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFAS 303
K ED K EKVL+VYFLSTEIP+W+LFFALGVSSDKE ++LI F +D SI N L AS
Sbjct: 255 NEKAEDYKRREKVLTVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIAS 314
Query: 304 IHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGY 363
IH AD C+ FR G NAL YV++ IK T FPP ES +EC++ YLFP L K+KARFLGY
Sbjct: 315 IHVADAVCEAFRCGNNALTYVEQQIKSTKFPPAESVDECLHLYLFPGLQSLKKKARFLGY 374
Query: 364 MVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDR 423
MVKCLL +Y+G+RKC+NRD FRNK +VH+AHAR++M +A+Q+ L GD
Sbjct: 375 MVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKHLSGDG 434
Query: 424 TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
++PIE+YLDAS++TNGLSRAFSTGAWSHPF++ ER+SG+VANLGRANPLQTL+DLRRTR
Sbjct: 435 DLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTR 494
Query: 484 QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFN 543
QQV YTGKVGDARYPHPSHWG++CFLSTPDGENCGLVKN+ + GLVST LE + E+LF
Sbjct: 495 QQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLESVVEKLFA 554
Query: 544 SGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDEL 603
GME+L DD L GK KV ++GDW+G+C DS SFV+ P ++EIKRD+
Sbjct: 555 CGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPREMEIKRDKD 614
Query: 604 QSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAW 663
+EVRIF DAGR+LRPLLVVEN+ K+K + Y F LLDHGI+EL+G EEEEDC TAW
Sbjct: 615 DNEVRIFTDAGRLLRPLLVVENLQKLKQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAW 674
Query: 664 GIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGF 723
GIK LLK+ P +THCELD+SFLLG+SC ++PFANHDH RRVLYQSQKH QAIGF
Sbjct: 675 GIKQLLKE-----PKIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGF 729
Query: 724 PTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNV 783
+TNP+IR DTLS QLFYPQ+PLF+T+ S+CL K L+NGQNAIVAVNV
Sbjct: 730 SSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKKE-----------VLFNGQNAIVAVNV 778
Query: 784 HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIG 843
HLGYNQEDS+VMN+ASLERGMFRSE IRSYKAEVD K+ + KR+ D++V FGK SKIG
Sbjct: 779 HLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSE-KRKKMDELVQFGKTHSKIG 837
Query: 844 RVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNF 903
+VDSL+DDGFPFIGAN+ +GDIVIG+ +SGADHSIKLKHTERG+VQKVVLSSND+GKNF
Sbjct: 838 KVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNF 897
Query: 904 SVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 963
+ VSLRQVRSPCLGDKFSSMHGQKGVLG+LE Q+NFPFTIQGIVPDIVINPHAFPSRQTP
Sbjct: 898 AAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTP 957
Query: 964 GQXXXXXXXXXXX-----XXXXXXCSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERL 1018
GQ + L R+ATPF+TP V ITEQLHRAGFS+WG ER+
Sbjct: 958 GQLLEAALSKGIACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERV 1017
Query: 1019 YDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE 1078
Y+GR+GEM+RS+IF+GPTFYQRL+HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE
Sbjct: 1018 YNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE 1077
Query: 1079 MERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICD 1138
MERDCLIAHGA+ANLHERLFTLSDS QMHICRKCK ANVI+ PYCR+C
Sbjct: 1078 MERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCV 1137
Query: 1139 SGDDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
S D +V+ VPYGAKLLCQELFSMGITL FDT+ C
Sbjct: 1138 SSDHVVRVYVPYGAKLLCQELFSMGITLNFDTKLC 1172
>GENEDB_PFALCIPARUM|PFB0715w [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase II
second largest subunit, putative" species:5833 "Plasmodium
falciparum" [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006366 EMBL:AE001362 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 HOGENOM:HOG000222962 RefSeq:XP_001349662.2
ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 952 (340.2 bits), Expect = 3.0e-159, Sum P(2) = 3.0e-159
Identities = 291/955 (30%), Positives = 460/955 (48%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV--EPGYDPSKKGEGEWRYASMRFG 89
SFF +GLV+ QI SYN+FI+ +Q+ D + + +P Y + Y S++FG
Sbjct: 42 SFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKIEIRPQPQYRTDRDENDNIIY-SLKFG 100
Query: 90 QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
Q++LD+P F+ +++P+ ARL+N+TYSS + + ++ Y VT K +E
Sbjct: 101 QLSLDRP-FYDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTYIIDEVT--KKPVLKE 157
Query: 150 QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKVFVAQE 209
++I + + +++ + K L + + G+C +D GGYFI+ G EKV VAQE
Sbjct: 158 KFIYERINLGRIP-LMLKSMFCWTKG-LPENEIADMGECSYDQGGYFIVNGGEKVLVAQE 215
Query: 210 QICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRL-VDM------SKFEDIK-GGEKV 256
++ ++V + GW +S+ +R++ V M S++ K GG+ V
Sbjct: 216 RMANNFIYVFKKKQPSKFGWVAEIRSQMERSQATSGFSVKMKTRSGGSQYGSNKSGGQLV 275
Query: 257 LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRK 316
++ ++ TEI + ILF ALG +SD++I+ I + D ++N L ++ + C E+
Sbjct: 276 ATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKLMINALRETLEE----CIEYPT 331
Query: 317 GRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL--H-GTK-QKARFLGYMVKC 367
L ++ K +G T +E + + P + H G + +K+ F+GYM+
Sbjct: 332 QDVCLDFIGK--RGPTVGASREKRILYAKELLRKEVLPHMGTHPGVESKKSYFIGYMINR 389
Query: 368 LLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVRP 427
LL A GR K D+RD F K + K + + LQR + ++
Sbjct: 390 LLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDVRRVLQRQIDNNKPFDV 449
Query: 428 IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
S +T G+ +TG W +G+ L R L LRR +
Sbjct: 450 AGAIRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNTPLG 509
Query: 488 YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGM 546
GK+ R H +HWG IC TP+G++ GLVKNL + +S I+E L G+
Sbjct: 510 REGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIYEFLTEWGL 569
Query: 547 EKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSE 606
E L + + K K+F++G W+G + + + I RD E
Sbjct: 570 ESLDEVPPELMKEKVKLFLNGKWVGCFNQIDNLIETLYELRRRCDISPEASIVRDVNSKE 629
Query: 607 VRIFMDAGRILRPLLVVENMG---KIK-------SLEG--KNYTFQALLDHGIIELVGTE 654
++IF D+GR +RPL VV+N+ K+K ++E + Y + L+ GIIE + E
Sbjct: 630 IKIFTDSGRAMRPLYVVKNVNGENKLKLTKEHVNNIEKYPETYNWDYLIQEGIIEYIDCE 689
Query: 655 EEEDCCTAWGIKYLLKDIEDKKPI--KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
EEE I + D++ FTHCE+ S +LG+ IIPF++H+ + R YQ
Sbjct: 690 EEETTM----ISMFIDDLKTGTGYYNNFTHCEIHPSLILGVCASIIPFSDHNQSPRNTYQ 745
Query: 713 SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
S QA+G TN +IR+DTL+H L+YPQ+PL T + + Y L EL
Sbjct: 746 SAM-GKQAMGIYVTNFNIRLDTLAHLLYYPQKPLVCTKVME------Y-----LRFRELP 793
Query: 773 NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDM 832
G NAIVA+ + GYNQEDSL+MN++S++RG+FRS R+Y +E + +
Sbjct: 794 AGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEKQQGSLIIESFEKPS 853
Query: 833 VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---DSGADHSIKLKHTERGMV 889
V K K G LDDDG G + DI+IGK + D D I+ ++T +
Sbjct: 854 VRVVK-NLKRGDYTKLDDDGLIAPGIRVLGDDIIIGKVSPNIDDEDDIIIEKRNTSSSSI 912
Query: 890 Q---KVVLS------SNDDGKNFSVVS-LRQVRSPCLGD-KFSSMHGQKGVLGFL 933
Q K +S SN++ N S +S + +RS + FSS G VL L
Sbjct: 913 QIYNKDSISNNNSNNSNNNMNNMSNMSNMSNIRSSISSNLSFSSNIGSSNVLDTL 967
Score = 624 (224.7 bits), Expect = 3.0e-159, Sum P(2) = 3.0e-159
Identities = 129/296 (43%), Positives = 176/296 (59%)
Query: 876 DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
D S+ L+ E G++ V+LSSN G F+ V +R VR P +GDKF+S HGQKG +G
Sbjct: 1056 DCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGITYR 1115
Query: 936 QENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFAT 995
E+ PF+ GI PDI++NPHA PSR T G G + ATPF+
Sbjct: 1116 TEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVECLTGKVAAI------EGGEGDATPFSK 1169
Query: 996 PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
+V I+++LH G+ K+G E LY+G G M++S IFIGPT+YQRL HM EDK+ R+ G
Sbjct: 1170 ITVQEISQKLHNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRG 1229
Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
P+ +TRQP R R GG++FGEMERDC+I+HG+A L ERLF SD+Y++H+C C +
Sbjct: 1230 PLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDNC-GL 1288
Query: 1116 ANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
+ C +C+S +I + +PY KLL QEL +M I K E
Sbjct: 1289 CCIADINKNAYE------CTVCNSKTNISQIYLPYACKLLFQELMTMAIYPKLVLE 1338
>UNIPROTKB|O96236 [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006366 EMBL:AE001362
GO:GO:0003899 GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_001349662.2 ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 952 (340.2 bits), Expect = 3.0e-159, Sum P(2) = 3.0e-159
Identities = 291/955 (30%), Positives = 460/955 (48%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV--EPGYDPSKKGEGEWRYASMRFG 89
SFF +GLV+ QI SYN+FI+ +Q+ D + + +P Y + Y S++FG
Sbjct: 42 SFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKIEIRPQPQYRTDRDENDNIIY-SLKFG 100
Query: 90 QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
Q++LD+P F+ +++P+ ARL+N+TYSS + + ++ Y VT K +E
Sbjct: 101 QLSLDRP-FYDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTYIIDEVT--KKPVLKE 157
Query: 150 QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKVFVAQE 209
++I + + +++ + K L + + G+C +D GGYFI+ G EKV VAQE
Sbjct: 158 KFIYERINLGRIP-LMLKSMFCWTKG-LPENEIADMGECSYDQGGYFIVNGGEKVLVAQE 215
Query: 210 QICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRL-VDM------SKFEDIK-GGEKV 256
++ ++V + GW +S+ +R++ V M S++ K GG+ V
Sbjct: 216 RMANNFIYVFKKKQPSKFGWVAEIRSQMERSQATSGFSVKMKTRSGGSQYGSNKSGGQLV 275
Query: 257 LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRK 316
++ ++ TEI + ILF ALG +SD++I+ I + D ++N L ++ + C E+
Sbjct: 276 ATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKLMINALRETLEE----CIEYPT 331
Query: 317 GRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL--H-GTK-QKARFLGYMVKC 367
L ++ K +G T +E + + P + H G + +K+ F+GYM+
Sbjct: 332 QDVCLDFIGK--RGPTVGASREKRILYAKELLRKEVLPHMGTHPGVESKKSYFIGYMINR 389
Query: 368 LLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVRP 427
LL A GR K D+RD F K + K + + LQR + ++
Sbjct: 390 LLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDVRRVLQRQIDNNKPFDV 449
Query: 428 IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
S +T G+ +TG W +G+ L R L LRR +
Sbjct: 450 AGAIRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNTPLG 509
Query: 488 YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGM 546
GK+ R H +HWG IC TP+G++ GLVKNL + +S I+E L G+
Sbjct: 510 REGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIYEFLTEWGL 569
Query: 547 EKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSE 606
E L + + K K+F++G W+G + + + I RD E
Sbjct: 570 ESLDEVPPELMKEKVKLFLNGKWVGCFNQIDNLIETLYELRRRCDISPEASIVRDVNSKE 629
Query: 607 VRIFMDAGRILRPLLVVENMG---KIK-------SLEG--KNYTFQALLDHGIIELVGTE 654
++IF D+GR +RPL VV+N+ K+K ++E + Y + L+ GIIE + E
Sbjct: 630 IKIFTDSGRAMRPLYVVKNVNGENKLKLTKEHVNNIEKYPETYNWDYLIQEGIIEYIDCE 689
Query: 655 EEEDCCTAWGIKYLLKDIEDKKPI--KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
EEE I + D++ FTHCE+ S +LG+ IIPF++H+ + R YQ
Sbjct: 690 EEETTM----ISMFIDDLKTGTGYYNNFTHCEIHPSLILGVCASIIPFSDHNQSPRNTYQ 745
Query: 713 SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
S QA+G TN +IR+DTL+H L+YPQ+PL T + + Y L EL
Sbjct: 746 SAM-GKQAMGIYVTNFNIRLDTLAHLLYYPQKPLVCTKVME------Y-----LRFRELP 793
Query: 773 NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDM 832
G NAIVA+ + GYNQEDSL+MN++S++RG+FRS R+Y +E + +
Sbjct: 794 AGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEKQQGSLIIESFEKPS 853
Query: 833 VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---DSGADHSIKLKHTERGMV 889
V K K G LDDDG G + DI+IGK + D D I+ ++T +
Sbjct: 854 VRVVK-NLKRGDYTKLDDDGLIAPGIRVLGDDIIIGKVSPNIDDEDDIIIEKRNTSSSSI 912
Query: 890 Q---KVVLS------SNDDGKNFSVVS-LRQVRSPCLGD-KFSSMHGQKGVLGFL 933
Q K +S SN++ N S +S + +RS + FSS G VL L
Sbjct: 913 QIYNKDSISNNNSNNSNNNMNNMSNMSNMSNIRSSISSNLSFSSNIGSSNVLDTL 967
Score = 624 (224.7 bits), Expect = 3.0e-159, Sum P(2) = 3.0e-159
Identities = 129/296 (43%), Positives = 176/296 (59%)
Query: 876 DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
D S+ L+ E G++ V+LSSN G F+ V +R VR P +GDKF+S HGQKG +G
Sbjct: 1056 DCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGITYR 1115
Query: 936 QENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFAT 995
E+ PF+ GI PDI++NPHA PSR T G G + ATPF+
Sbjct: 1116 TEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVECLTGKVAAI------EGGEGDATPFSK 1169
Query: 996 PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
+V I+++LH G+ K+G E LY+G G M++S IFIGPT+YQRL HM EDK+ R+ G
Sbjct: 1170 ITVQEISQKLHNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRG 1229
Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
P+ +TRQP R R GG++FGEMERDC+I+HG+A L ERLF SD+Y++H+C C +
Sbjct: 1230 PLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDNC-GL 1288
Query: 1116 ANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
+ C +C+S +I + +PY KLL QEL +M I K E
Sbjct: 1289 CCIADINKNAYE------CTVCNSKTNISQIYLPYACKLLFQELMTMAIYPKLVLE 1338
>CGD|CAL0004145 [details] [associations]
symbol:orf19.3349 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 891 (318.7 bits), Expect = 4.7e-159, Sum P(2) = 4.7e-159
Identities = 202/507 (39%), Positives = 289/507 (57%)
Query: 680 FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQL 739
+THCE+ S +LG++ IIPF +H+ + R YQS QA+G TN S+R+DT+++ L
Sbjct: 745 YTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAM-GKQAMGVFLTNYSVRMDTMANIL 803
Query: 740 FYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRAS 799
+YPQ+PL T + Y L EL GQNAIVA+ + GYNQEDS++MN++S
Sbjct: 804 YYPQKPLGTTRSME------Y-----LKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSS 852
Query: 800 LERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGAN 859
++RG+FRS RSY +++ ++ + + ++ K G + LD+DG G
Sbjct: 853 IDRGLFRSLFFRSYM-DIEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVR 911
Query: 860 LQSGDIVIGKYADSGAD----------H-----SIKLKHTERGMVQKVVLSSNDDGKNFS 904
+ DI+IGK AD H S L+ TE G+V +V+L++N DG F
Sbjct: 912 VSGEDIIIGKTTPIPADAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFV 971
Query: 905 VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 964
V +R + P +GDKF+S HGQKG +G E+ PFT +GIVPD++INPHA PSR T
Sbjct: 972 KVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVA 1031
Query: 965 QXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTG 1024
SG + A+PF + + I+ L G+ G E +Y+G TG
Sbjct: 1032 HLIECLLSKVSSL------SGFEGDASPFTDVTTEQISTLLRDHGYQSRGFEVMYNGHTG 1085
Query: 1025 EMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1084
+ + + +F GPT+YQRL HM +DK+ R GPV LTRQPV R R GG++FGEMERDC+
Sbjct: 1086 KKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCM 1145
Query: 1085 IAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIV 1144
IAHGAA L ERL SD++++H+C C + +VI CR C + +I
Sbjct: 1146 IAHGAAGFLKERLMEASDAFRVHVCGMC-GLMSVIANLKKNQFE-----CRSCKNKTNIY 1199
Query: 1145 KANVPYGAKLLCQELFSMGITLKFDTE 1171
+ ++PY AKLL QEL +M I+ + TE
Sbjct: 1200 QIHIPYAAKLLFQELMAMNISPRLYTE 1226
Score = 680 (244.4 bits), Expect = 4.7e-159, Sum P(2) = 4.7e-159
Identities = 189/646 (29%), Positives = 311/646 (48%)
Query: 3 SDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSF 62
S D DP + E + C SFF E GLVS Q++S++EF++ +Q+
Sbjct: 2 SADESMADPYQYDSIDEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWED 61
Query: 63 GETIVE-PGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTY 121
I++ P S+K RY + FG++ + KPS G+G H +FP+ ARL+N+TY
Sbjct: 62 SHLILDQPAQHTSEKDHENKRY-EITFGKIYISKPSQTEGDGST-HAVFPQEARLRNLTY 119
Query: 122 SSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMK 181
SS + V + +V+ + +K K ++IQ+E D T + +G++P+M++S C ++
Sbjct: 120 SSPLYVDMTSKVF---KSDDNKRKDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLR 176
Query: 182 GV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWT-VAYKSE--- 231
+ E +C +D GGYF+I G+EKV +AQE+ + V + +++ +E
Sbjct: 177 DLAEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRS 236
Query: 232 --NKRNRLIVRLVDMSKFEDIKG--GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNL 286
K +RLI + D KG G + + ++ +IPI I+F ALGV D +I+
Sbjct: 237 AIEKGSRLISSMQIKLYGRDEKGVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEH 296
Query: 287 IDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKL-IKGTTFPPG-ESTEECMN 344
I + D +L +L + + ++ AL ++ + + G + ++ +
Sbjct: 297 ICYDANDWQMLEMLKPCVEEGF----VIQEREVALDFIGRRGVLGIRREKRIQYAKDILQ 352
Query: 345 TYLFPSL---HGTK-QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXX 400
L P++ G + +KA FLGYMV LL R++ D+RD F K
Sbjct: 353 KELLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLF 412
Query: 401 KVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 460
++ K + +QR + + + + +T+GL + +TG W K
Sbjct: 413 RILFKKLTKDIYNYMQRCVENGGDFN-VTLAVKSQTITDGLRYSLATGNWGEQRKAMSSR 471
Query: 461 SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
+G+ L R TL LRRT + GK+ R H +HWG +C TP+G+ CGLV
Sbjct: 472 AGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 531
Query: 521 KNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSF 579
KNL + +S EPI L + G+E L D + +VFV+G W+GV +D +
Sbjct: 532 KNLSLMTCISVGTPSEPILGFLRDYGLEVLEDYVPSNAPDSTRVFVNGVWVGVHRDPAAL 591
Query: 580 VSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN 625
V +V I RD + E +IF DAGR+ RPL +V++
Sbjct: 592 VDFMRELRRSGDLSPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDD 637
Score = 205 (77.2 bits), Expect = 4.3e-80, Sum P(2) = 4.3e-80
Identities = 78/264 (29%), Positives = 120/264 (45%)
Query: 633 EGKNYTFQALLDHGIIELVGTEEEEDCCTAW---GIKYLLKDIED--KKPIKFTHCELDM 687
E YT+ +L+ GI+E V EEEE A +K + + ++ I+ ELD
Sbjct: 671 ENSRYTWSSLVADGIVEYVDAEEEETIMIAMTPDDVKASKNSVSESEQQKIQLEEQELDP 730
Query: 688 SFLLGLSCGIIPFAN-HDHARRVLYQSQ--KHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
G N H + ++ S ++ I FP N S R +T +
Sbjct: 731 ----GKRIKPTTSGNTHTYTHCEIHPSMILGVAASIIPFPDHNQSPR-NTYQSAMGKQAM 785
Query: 745 PLFRTMIS---DCLG-------KP-GYGHN-HILPRPELYNGQNAIVAVNVHLGYNQEDS 792
+F T S D + KP G + L EL GQNAIVA+ + GYNQEDS
Sbjct: 786 GVFLTNYSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDS 845
Query: 793 LVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDG 852
++MN++S++RG+FRS RSY +++ ++ + + ++ K G + LD+DG
Sbjct: 846 MIMNQSSIDRGLFRSLFFRSYM-DIEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDG 904
Query: 853 FPFIGANLQSGDIVIGKYADSGAD 876
G + DI+IGK AD
Sbjct: 905 LIAPGVRVSGEDIIIGKTTPIPAD 928
>UNIPROTKB|Q5A8Y5 [details] [associations]
symbol:RPB140 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0042493 "response to drug"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 891 (318.7 bits), Expect = 4.7e-159, Sum P(2) = 4.7e-159
Identities = 202/507 (39%), Positives = 289/507 (57%)
Query: 680 FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQL 739
+THCE+ S +LG++ IIPF +H+ + R YQS QA+G TN S+R+DT+++ L
Sbjct: 745 YTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAM-GKQAMGVFLTNYSVRMDTMANIL 803
Query: 740 FYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRAS 799
+YPQ+PL T + Y L EL GQNAIVA+ + GYNQEDS++MN++S
Sbjct: 804 YYPQKPLGTTRSME------Y-----LKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSS 852
Query: 800 LERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGAN 859
++RG+FRS RSY +++ ++ + + ++ K G + LD+DG G
Sbjct: 853 IDRGLFRSLFFRSYM-DIEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVR 911
Query: 860 LQSGDIVIGKYADSGAD----------H-----SIKLKHTERGMVQKVVLSSNDDGKNFS 904
+ DI+IGK AD H S L+ TE G+V +V+L++N DG F
Sbjct: 912 VSGEDIIIGKTTPIPADAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFV 971
Query: 905 VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 964
V +R + P +GDKF+S HGQKG +G E+ PFT +GIVPD++INPHA PSR T
Sbjct: 972 KVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVA 1031
Query: 965 QXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTG 1024
SG + A+PF + + I+ L G+ G E +Y+G TG
Sbjct: 1032 HLIECLLSKVSSL------SGFEGDASPFTDVTTEQISTLLRDHGYQSRGFEVMYNGHTG 1085
Query: 1025 EMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1084
+ + + +F GPT+YQRL HM +DK+ R GPV LTRQPV R R GG++FGEMERDC+
Sbjct: 1086 KKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCM 1145
Query: 1085 IAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIV 1144
IAHGAA L ERL SD++++H+C C + +VI CR C + +I
Sbjct: 1146 IAHGAAGFLKERLMEASDAFRVHVCGMC-GLMSVIANLKKNQFE-----CRSCKNKTNIY 1199
Query: 1145 KANVPYGAKLLCQELFSMGITLKFDTE 1171
+ ++PY AKLL QEL +M I+ + TE
Sbjct: 1200 QIHIPYAAKLLFQELMAMNISPRLYTE 1226
Score = 680 (244.4 bits), Expect = 4.7e-159, Sum P(2) = 4.7e-159
Identities = 189/646 (29%), Positives = 311/646 (48%)
Query: 3 SDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSF 62
S D DP + E + C SFF E GLVS Q++S++EF++ +Q+
Sbjct: 2 SADESMADPYQYDSIDEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWED 61
Query: 63 GETIVE-PGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTY 121
I++ P S+K RY + FG++ + KPS G+G H +FP+ ARL+N+TY
Sbjct: 62 SHLILDQPAQHTSEKDHENKRY-EITFGKIYISKPSQTEGDGST-HAVFPQEARLRNLTY 119
Query: 122 SSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMK 181
SS + V + +V+ + +K K ++IQ+E D T + +G++P+M++S C ++
Sbjct: 120 SSPLYVDMTSKVF---KSDDNKRKDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLR 176
Query: 182 GV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWT-VAYKSE--- 231
+ E +C +D GGYF+I G+EKV +AQE+ + V + +++ +E
Sbjct: 177 DLAEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRS 236
Query: 232 --NKRNRLIVRLVDMSKFEDIKG--GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNL 286
K +RLI + D KG G + + ++ +IPI I+F ALGV D +I+
Sbjct: 237 AIEKGSRLISSMQIKLYGRDEKGVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEH 296
Query: 287 IDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKL-IKGTTFPPG-ESTEECMN 344
I + D +L +L + + ++ AL ++ + + G + ++ +
Sbjct: 297 ICYDANDWQMLEMLKPCVEEGF----VIQEREVALDFIGRRGVLGIRREKRIQYAKDILQ 352
Query: 345 TYLFPSL---HGTK-QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXX 400
L P++ G + +KA FLGYMV LL R++ D+RD F K
Sbjct: 353 KELLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLF 412
Query: 401 KVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 460
++ K + +QR + + + + +T+GL + +TG W K
Sbjct: 413 RILFKKLTKDIYNYMQRCVENGGDFN-VTLAVKSQTITDGLRYSLATGNWGEQRKAMSSR 471
Query: 461 SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
+G+ L R TL LRRT + GK+ R H +HWG +C TP+G+ CGLV
Sbjct: 472 AGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 531
Query: 521 KNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSF 579
KNL + +S EPI L + G+E L D + +VFV+G W+GV +D +
Sbjct: 532 KNLSLMTCISVGTPSEPILGFLRDYGLEVLEDYVPSNAPDSTRVFVNGVWVGVHRDPAAL 591
Query: 580 VSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN 625
V +V I RD + E +IF DAGR+ RPL +V++
Sbjct: 592 VDFMRELRRSGDLSPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDD 637
Score = 205 (77.2 bits), Expect = 4.3e-80, Sum P(2) = 4.3e-80
Identities = 78/264 (29%), Positives = 120/264 (45%)
Query: 633 EGKNYTFQALLDHGIIELVGTEEEEDCCTAW---GIKYLLKDIED--KKPIKFTHCELDM 687
E YT+ +L+ GI+E V EEEE A +K + + ++ I+ ELD
Sbjct: 671 ENSRYTWSSLVADGIVEYVDAEEEETIMIAMTPDDVKASKNSVSESEQQKIQLEEQELDP 730
Query: 688 SFLLGLSCGIIPFAN-HDHARRVLYQSQ--KHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
G N H + ++ S ++ I FP N S R +T +
Sbjct: 731 ----GKRIKPTTSGNTHTYTHCEIHPSMILGVAASIIPFPDHNQSPR-NTYQSAMGKQAM 785
Query: 745 PLFRTMIS---DCLG-------KP-GYGHN-HILPRPELYNGQNAIVAVNVHLGYNQEDS 792
+F T S D + KP G + L EL GQNAIVA+ + GYNQEDS
Sbjct: 786 GVFLTNYSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDS 845
Query: 793 LVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDG 852
++MN++S++RG+FRS RSY +++ ++ + + ++ K G + LD+DG
Sbjct: 846 MIMNQSSIDRGLFRSLFFRSYM-DIEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDG 904
Query: 853 FPFIGANLQSGDIVIGKYADSGAD 876
G + DI+IGK AD
Sbjct: 905 LIAPGVRVSGEDIIIGKTTPIPAD 928
>POMBASE|SPAC23G3.01 [details] [associations]
symbol:rpb2 "RNA polymerase II complex subunit Rpb2"
species:4896 "Schizosaccharomyces pombe" [GO:0000775 "chromosome,
centromeric region" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IGI] [GO:0031048 "chromatin
silencing by small RNA" evidence=IMP] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IGI] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PomBase:SPAC23G3.01 PANTHER:PTHR20856 GO:GO:0005829
EMBL:CU329670 GO:GO:0000775 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0003723 GO:GO:0000790 GO:GO:0006366
GO:GO:0031048 GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:3H0G
PDBsum:3H0G KO:K03010 OMA:IMIVFRA HOGENOM:HOG000222962 EMBL:D13337
PIR:S35548 PIR:T50175 RefSeq:NP_593101.2 ProteinModelPortal:Q02061
IntAct:Q02061 MINT:MINT-1214536 STRING:Q02061
EnsemblFungi:SPAC23G3.01.1 GeneID:2541446 KEGG:spo:SPAC23G3.01
OrthoDB:EOG45HW5D EvolutionaryTrace:Q02061 NextBio:20802548
Uniprot:Q02061
Length = 1210
Score = 866 (309.9 bits), Expect = 7.6e-158, Sum P(3) = 7.6e-158
Identities = 203/507 (40%), Positives = 281/507 (55%)
Query: 680 FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQL 739
+THCE+ + +LG+ IIPF +H+ + R YQS QA+G TN +R+DT+++ L
Sbjct: 727 WTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAM-GKQAMGVYLTNYQVRMDTMANIL 785
Query: 740 FYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRAS 799
+YPQ+PL T + Y L EL GQNAIVA+ + GYNQEDS++MN+AS
Sbjct: 786 YYPQKPLATTRSME------Y-----LKFRELPAGQNAIVAILCYSGYNQEDSIIMNQAS 834
Query: 800 LERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGAN 859
++RG+FRS R+Y + M V + V ++ K G D L+DDG G
Sbjct: 835 IDRGLFRSIFYRTYTDQEKKIGMTVMEEF-ERPVRSTTLRMKHGTYDKLEDDGLIAPGTR 893
Query: 860 LQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFS 904
+ DI+IGK A DH S L+ TE G+V +V++++N +G F
Sbjct: 894 VSGEDIIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFV 953
Query: 905 VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 964
V +R R P +GDKF+S HGQKG +G E+ PF+ QGIVPDI+INPHA PSR T
Sbjct: 954 KVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVA 1013
Query: 965 QXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTG 1024
SG + ATPF +V+A+++ L GF G E +Y G TG
Sbjct: 1014 HLVECQLSKVSAL------SGFEGDATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGHTG 1067
Query: 1025 EMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1084
+ + +F+GPT+YQRL H+ +DK+ R GPV LTRQPV R R GG++FGEMERDC
Sbjct: 1068 RKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQ 1127
Query: 1085 IAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIV 1144
I+HG ++ L ERLF SD+Y++ +C C +A I CR C +
Sbjct: 1128 ISHGCSSVLRERLFDCSDAYRVIVCDICGLIA--IASYKKDSYE-----CRSCQNRTRFS 1180
Query: 1145 KANVPYGAKLLCQELFSMGITLKFDTE 1171
+ +PY AKLL QEL SM I + T+
Sbjct: 1181 QVYLPYAAKLLFQELMSMNIAPRLFTK 1207
Score = 664 (238.8 bits), Expect = 7.6e-158, Sum P(3) = 7.6e-158
Identities = 191/625 (30%), Positives = 307/625 (49%)
Query: 26 CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGE-TIVEPGYDPSKKGEGEWRYA 84
C SFF E L Q+ S++EF++N +Q+ D T+ + +G+ RY
Sbjct: 17 CWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDVTRRY- 75
Query: 85 SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
+ FGQ+ L +P+ +G MFP+ ARL+N+TYSS + V ++ +V
Sbjct: 76 EINFGQIYLSRPTMTEADGSTT-TMFPQEARLRNLTYSSPLYVDMRKKVMV---AADSNV 131
Query: 145 KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFII 198
G E+++ +E +E + + IG+IP+M++S C + GV + +C +D GGYFII
Sbjct: 132 PIGEEEWLVEEE-DEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFII 190
Query: 199 KGAEKVFVAQEQICLKRLWVSNSMGWT-VAYKSE-----NKRNRLI--VRLVDMSKFEDI 250
G+EKV +AQE+ + V + +AY +E + +RLI +++ M++ +
Sbjct: 191 NGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTEN 250
Query: 251 KGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNK 310
G ++ ++ ++IPI I+F ALGV D++I+ I + D +L ++ I +A
Sbjct: 251 SGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAFVI 310
Query: 311 CDEFRKGRNALKYVDKLIKG-TTFPPGES----TEECMNTYLFP---SLHGTK-QKARFL 361
D+ AL Y+ K +G TT E + + L P ++ G + +KA FL
Sbjct: 311 QDK----DIALDYIGK--RGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFL 364
Query: 362 GYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYG 421
GYM+ +L RR+ D+RD F K ++ + + K +Q+ +
Sbjct: 365 GYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVET 424
Query: 422 DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
+R + + ++I+TNGL + +TG W + G+ L R TL LRR
Sbjct: 425 NREFN-LTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRR 483
Query: 482 TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ 540
T + GK+ R H +HWG +C TP+G+ CGLVKNL + VS S PI E
Sbjct: 484 TNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEF 543
Query: 541 LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKR 600
L G+E L D + KVFV+G W+GV +D +V I R
Sbjct: 544 LEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVR 603
Query: 601 DELQSEVRIFMDAGRILRPLLVVEN 625
D + E+R+F DAGRI RPL +V+N
Sbjct: 604 DIREKELRLFTDAGRICRPLFIVDN 628
Score = 46 (21.3 bits), Expect = 7.6e-158, Sum P(3) = 7.6e-158
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 635 KNYTFQALLDHGIIELVGTEEEE 657
+ + + AL+ G+IE + EEEE
Sbjct: 661 QRFGWTALVSSGLIEYLDAEEEE 683
>SGD|S000005677 [details] [associations]
symbol:RPB2 "RNA polymerase II second largest subunit B150"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005677 PANTHER:PTHR20856 GO:GO:0005739
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006366
GO:GO:0003899 EMBL:U55020 RefSeq:NP_014796.3 GeneID:854324
KEGG:sce:YOR153W KO:K08711 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:1I3Q
PDB:1I50 PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U
PDB:1R9S PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG
PDB:1TWH PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63
PDB:2B8K PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7
PDB:2JA8 PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z
PDB:2R92 PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG
PDB:3GTJ PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ
PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ
PDB:3I4M PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2
PDB:3PO3 PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16
PDB:3S17 PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H
PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I
PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS
PDBsum:1I3Q PDBsum:1I50 PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK
PDBsum:1NT9 PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T
PDBsum:1SFO PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG
PDBsum:1TWH PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y
PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I
PDBsum:2E2J PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8
PDBsum:2NVQ PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ
PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9
PDBsum:3CQZ PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK
PDBsum:3GTL PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ
PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX
PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F
PDBsum:3K7A PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3
PDBsum:3QT1 PDBsum:3RZD PDBsum:3RZO PDBsum:3S14 PDBsum:3S15
PDBsum:3S16 PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q
PDBsum:3S1R PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C
PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I
PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93
PDBsum:4BBR PDBsum:4BBS KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 OrthoDB:EOG45HW5D
EMBL:M15693 EMBL:Z75059 EMBL:AF527884 PIR:A25884 RefSeq:NP_014794.3
ProteinModelPortal:P08518 DIP:DIP-14N IntAct:P08518
MINT:MINT-654304 STRING:P08518 PaxDb:P08518 PeptideAtlas:P08518
PRIDE:P08518 EnsemblFungi:YOR151C GeneID:854322 KEGG:sce:YOR151C
CYGD:YOR151c EvolutionaryTrace:P08518 NextBio:976360
ArrayExpress:P08518 Genevestigator:P08518 GermOnline:YOR151C
Uniprot:P08518
Length = 1224
Score = 927 (331.4 bits), Expect = 3.9e-155, Sum P(2) = 3.9e-155
Identities = 227/606 (37%), Positives = 330/606 (54%)
Query: 598 IKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEG-KNYTFQALLDHGIIELVGTEEE 656
++ DE + + G I + L+ E E + YT+ +LL+ G++E + EEE
Sbjct: 640 VEDDESLGHKELKVRKGHIAK-LMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEE 698
Query: 657 EDCCTAWGIKYLLK---------DIEDKKPIK-------FTHCELDMSFLLGLSCGIIPF 700
E A + L D++ K I+ FTHCE+ S +LG++ IIPF
Sbjct: 699 ESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPF 758
Query: 701 ANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY 760
+H+ + R YQS QA+G TN ++R+DT+++ L+YPQ+PL T + Y
Sbjct: 759 PDHNQSPRNTYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAME------Y 811
Query: 761 GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK 820
L EL GQNAIVA+ + GYNQEDS++MN++S++RG+FRS RSY +
Sbjct: 812 -----LKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKY 866
Query: 821 EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGAD---- 876
M + + + ++ K G D LDDDG G + D++IGK D
Sbjct: 867 GMSITE-TFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEEL 925
Query: 877 ------HSIK-----LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
HS + L+ TE G+V +V++++N DG F V +R + P +GDKF+S HG
Sbjct: 926 GQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHG 985
Query: 926 QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSG 985
QKG +G +E+ PFT +GIVPD++INPHA PSR T SG
Sbjct: 986 QKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAAL------SG 1039
Query: 986 LKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
+ A+PF +V+ I++ L G+ G E +Y+G TG+ + + IF GPT+YQRL HM
Sbjct: 1040 NEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMV 1099
Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
+DK+ R GP+ LTRQPV R R GG++FGEMERDC+IAHGAA+ L ERL SD+++
Sbjct: 1100 DDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFR 1159
Query: 1106 MHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
+HIC C + VI C+ CD+ DI + ++PY AKLL QEL +M IT
Sbjct: 1160 VHICGIC-GLMTVIAKLNHNQFE-----CKGCDNKIDIYQIHIPYAAKLLFQELMAMNIT 1213
Query: 1166 LKFDTE 1171
+ T+
Sbjct: 1214 PRLYTD 1219
Score = 607 (218.7 bits), Expect = 3.9e-155, Sum P(2) = 3.9e-155
Identities = 189/649 (29%), Positives = 299/649 (46%)
Query: 2 DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVS-FFNEYGLVSHQINSYNEFIKNGLQKAFD 60
D D GF D ++ + + A +S FF E GLVS Q++S+N+F+ LQ
Sbjct: 12 DEDPYGFEDESAPITAEDSW-------AVISAFFREKGLVSQQLDSFNQFVDYTLQDIIC 64
Query: 61 SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
I+E + + + R + FG++ + KP +G H ++P+ ARL+N+T
Sbjct: 65 EDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGVT-HALYPQEARLRNLT 123
Query: 121 YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSD-ETTNIIIGRIPVMVKSDLCW 179
YSS + V V+ + Y V + K + I +E D E+ + IGR+P+M++S C+
Sbjct: 124 YSSGLFVDVKKRTYEAIDVPGRELKY---ELIAEESEDDSESGKVFIGRLPIMLRSKNCY 180
Query: 180 MKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWT-VAYKSE- 231
+ + D C FD GGYFII G+EKV +AQE+ + V + +++ +E
Sbjct: 181 LSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEI 240
Query: 232 ----NKRNRLIVRL-VDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNL 286
K +R I L V + E ++ ++ +IPI I+F ALG+ D EI+
Sbjct: 241 RSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEH 300
Query: 287 IDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEE 341
I + D +L +L + D D AL ++ + +GT + ++
Sbjct: 301 ICYDVNDWQMLEMLKPCVEDGFVIQDR----ETALDFIGR--RGTALGIKKEKRIQYAKD 354
Query: 342 CMNTYLFP---SLHGTK-QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXX 397
+ P L G + +KA FLGYM+ LL R+ D+RD F K
Sbjct: 355 ILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLA 414
Query: 398 XXXKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRT 457
K K + + +QR + ++ ++A +T+GL A +TG W K
Sbjct: 415 QLFKTLFKKLTKDIFRYMQRTVEEAHDFN-MKLAINAKTITSGLKYALATGNWGEQKKAM 473
Query: 458 ERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENC 517
+G+ L R TL LRRT + GK+ R H +HWG +C TP+G+ C
Sbjct: 474 SSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQAC 533
Query: 518 GLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDS 576
GLVKNL + +S PI L GME L D + +VFV+G W GV ++
Sbjct: 534 GLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNP 593
Query: 577 LSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN 625
+ +V + RD + E++IF DAGR+ RPL +VE+
Sbjct: 594 ARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVED 642
>ASPGD|ASPL0000039770 [details] [associations]
symbol:AN9120 species:162425 "Emericella nidulans"
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA HOGENOM:HOG000222962 EnsemblFungi:CADANIAT00009490
Uniprot:C8VK81
Length = 1252
Score = 853 (305.3 bits), Expect = 3.9e-155, Sum P(4) = 3.9e-155
Identities = 198/517 (38%), Positives = 285/517 (55%)
Query: 669 LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNP 728
++ I ++ +THCE+ S +LG+ IIPF +H+ + R YQS QA+G TN
Sbjct: 753 VRSILSQRAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGVFLTNF 811
Query: 729 SIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYN 788
R++T+++ L+YPQ+PL T + L EL GQNAIVA+ + GYN
Sbjct: 812 DQRMETMANILYYPQKPLATTRSME-----------FLRFRELPAGQNAIVAIACYSGYN 860
Query: 789 QEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSL 848
QEDS++MN++S++RG+FRS R+Y + V R M + I + G D L
Sbjct: 861 QEDSVIMNQSSIDRGLFRSLFYRTYSDSEKMVGLTVVERFEKPMRS-DTIGMRKGTYDKL 919
Query: 849 DDDGFPFIGANLQSGDIVIGKYADSGAD----------H-----SIKLKHTERGMVQKVV 893
D+DG G + DI+IGK A D H S L+ TE G+V +V+
Sbjct: 920 DEDGIVNPGVRVSGEDIIIGKTAPLAPDAEELGQRTKNHTKLDVSTPLRSTENGIVDQVL 979
Query: 894 LSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVIN 953
+++ D V +R + P +GDKF+S HGQKG +G QE+ PFT +G+ PD++IN
Sbjct: 980 VTTTPDSLRSVKVRMRMTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIIN 1039
Query: 954 PHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLHRAGFSKW 1013
PHA PSR T G + ATPF +VD+I+ L G+
Sbjct: 1040 PHAIPSRMT------IAHLIECQLSKVSALRGFEGDATPFTDVTVDSISRLLREHGYQSR 1093
Query: 1014 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1073
G E +Y+G TG + + +F+GPT+YQRL HM +DK+ R GP LTRQPV R R GG
Sbjct: 1094 GFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGG 1153
Query: 1074 IKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPY 1133
++FGEMERDC+IAHGA+A L ERLF +SD +++HIC C + + +
Sbjct: 1154 LRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFE------ 1207
Query: 1134 CRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
CR+C++ I + ++PY AKLL QEL +M I+ + T
Sbjct: 1208 CRLCNNKHRISQVHIPYAAKLLFQELAAMNISARMFT 1244
Score = 498 (180.4 bits), Expect = 3.9e-155, Sum P(4) = 3.9e-155
Identities = 148/459 (32%), Positives = 215/459 (46%)
Query: 187 DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLIVR 240
+C +D GGYFII G+EKV +AQE+ + V + Y +E K +RL+ +
Sbjct: 207 ECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQ 266
Query: 241 L-VDM-SKFEDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCS 295
L + + K + KGG + S ++ +IPI I+F ALGV SD++I+N I + D
Sbjct: 267 LSLKLFGKGDSAKGGFGPTIRSTLPYIKADIPIVIVFRALGVVSDEDILNHICYDRNDTP 326
Query: 296 ILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES----TEECMNTYLFPSL 351
+L +L I + D AL ++ K + E E M L P +
Sbjct: 327 MLEMLKPCIEEGFVIQDR----EVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHI 382
Query: 352 ---HGTK-QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHA 407
G++ +KA FLGYMV LLQ GRR D+RD F K +V
Sbjct: 383 SQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRV 442
Query: 408 RKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANL 467
+ + + +QR + DR + + L AS +T GL A +TG W K +G+ L
Sbjct: 443 TRDLQRYVQRCVESDREIY-LNVGLKASTVTQGLRYALATGNWGEQKKAASAKAGVSQVL 501
Query: 468 GRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTG 527
R TL LRRT + GK+ R H +HWG +C TP+G+ CGLVKNL +
Sbjct: 502 SRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMC 561
Query: 528 LVSTSI-LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXX 586
++ EPI + + ME L + KVFV+G W+GV + V
Sbjct: 562 YITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHRQPSHLVETMQAL 621
Query: 587 XXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN 625
+V + RD + E +IF DAGR+ RPL VV+N
Sbjct: 622 RRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDN 660
Score = 183 (69.5 bits), Expect = 3.9e-155, Sum P(4) = 3.9e-155
Identities = 57/198 (28%), Positives = 101/198 (51%)
Query: 16 DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
D+ E C SFF+ GLVS Q++S++EFI + LQ+ + G+ ++ PS+
Sbjct: 15 DMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTLQELVEEQGQVTLDQTIPPSE 74
Query: 76 KGEGEW---RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQ 132
RY ++FG V L +P G+G M P ARL+NMTY+S + + ++ +
Sbjct: 75 DEVDPVVVRRY-ELKFGTVMLSRPMAMEGDGAATI-MLPHEARLRNMTYASPLYLGIKKK 132
Query: 133 VYT-QKRVTSDKFKT--GREQ------YIQKEVLS---DETTN--IIIGRIPVMVKSDLC 178
+ ++R+ D+ G E Y+Q E ++ D+ + IG++P+M+KS C
Sbjct: 133 IMEGRERMVGDRDDDDMGNEDRKATGTYLQWEEMALPPDQAKEETVHIGKMPIMLKSKYC 192
Query: 179 WMKGV-EKGDCDFDHGGY 195
++ + E+ D++ Y
Sbjct: 193 LLRDLGEQALYDWNECPY 210
Score = 44 (20.5 bits), Expect = 3.9e-155, Sum P(4) = 3.9e-155
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 637 YTFQALLDHGIIELVGTEEEE 657
+ + L+ G++E V EEEE
Sbjct: 700 FGWDGLVKSGVVEYVDAEEEE 720
Score = 38 (18.4 bits), Expect = 3.0e-56, Sum P(4) = 3.0e-56
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 654 EEEEDCCTAWGIKYLLKD--IEDKKPIKFTHCE 684
E E DC A G LK+ + P + C+
Sbjct: 1158 EMERDCMIAHGASAFLKERLFDVSDPFRVHICD 1190
>DICTYBASE|DDB_G0288257 [details] [associations]
symbol:rpb2 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 dictyBase:DDB_G0288257 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR GO:GO:0006366
EMBL:AAFI02000109 GO:GO:0003899 GO:GO:0005665 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA RefSeq:XP_636812.1 STRING:Q54J75 PRIDE:Q54J75
EnsemblProtists:DDB0216277 GeneID:8626529 KEGG:ddi:DDB_G0288257
ProtClustDB:CLSZ2429137 Uniprot:Q54J75
Length = 1170
Score = 1487 (528.5 bits), Expect = 2.0e-152, P = 2.0e-152
Identities = 398/1185 (33%), Positives = 603/1185 (50%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG--YDPSKKG-EGEWRYASMRF 88
++F E GLV Q++S++EFI+N +Q+ D + P + P + S++F
Sbjct: 29 AYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPESQHHPGQAVVSNNVSTFSVKF 88
Query: 89 GQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
GQ+ L KP+ A G + P AR++N+TYS+ + V + V T + D+ +T
Sbjct: 89 GQIYLSKPT--AEIDGVSQQVTPNQARIRNLTYSAPLFVDITKTVMTGSKSKGDERRTDE 146
Query: 149 EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKVFVAQ 208
+ K + + ++ + ++ ++D + + G+C FD GGYFII G+EKV +AQ
Sbjct: 147 ---VLKRIFIGKVPIMLRSQYCMLNEADDRDLTTM--GECSFDQGGYFIINGSEKVLIAQ 201
Query: 209 EQICLKRLWV-SNSMGWTVAYKSENKR-----NRLIVRLVDMSKFEDIKG--GEKVLSVY 260
E++ ++V S +Y +E + +R + KG G K +V
Sbjct: 202 EKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKMLHNTNKGPVGIKA-TVP 260
Query: 261 FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
++ ++P+ I+F ALG +DK+I+ I + +D +++++ S+ ++ + A
Sbjct: 261 YIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLMRPSLEESF----VIQSQEVA 316
Query: 321 LKYVDKLIKGTTFPPGES----TEECMNTYLFPSL-----HGTKQKARFLGYMVKCLLQA 371
L Y+ K +G+T E E + + P + + TK KA + GY+ LL A
Sbjct: 317 LDYLGK--RGSTMGTREQRIKFAREVLQKEMLPHVSVAEFYETK-KAFYFGYITHRLLLA 373
Query: 372 YSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVRPIEYY 431
RR D+RD F NK + K + LQR + D+
Sbjct: 374 SLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDKDKEFIASSA- 432
Query: 432 LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGK 491
+ + +T+GL + +TG W K SG+ L R TL LRR + GK
Sbjct: 433 VKSKTITSGLKYSLATGNWGSS-KSGGTKSGVAQVLNRLTFASTLSHLRRLNTPIGREGK 491
Query: 492 VGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLA 550
+ R H +HWG +C TP+G+ CGLVKNL + +S S +PI E L E L
Sbjct: 492 LAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFLEEWTTENLE 551
Query: 551 D--DASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVR 608
+ D S S+ K+FV+G W+G+ +S +V + RD + E+R
Sbjct: 552 EISDLS-SIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSVVRDIREKELR 610
Query: 609 IFMDAGRILRPLLVVE-NMGKIKS------LEGKNYTFQALLDHGIIELVGTEEEEDCCT 661
++ D GR RPL VV+ N +IK + Y +Q LL GI+E + EEEE
Sbjct: 611 LYTDPGRCCRPLFVVQDNKVQIKKQHINKLINNDEYKWQDLLSEGIVEYIDAEEEETVLI 670
Query: 662 AWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAI 721
A + L+ ++ +THCE+ S +LG+ C IIPF +H+ + R YQ+ QA+
Sbjct: 671 AMTPEDLVPMPNEQIVHTYTHCEIHPSMILGICCSIIPFPDHNQSPRNTYQAAM-GKQAM 729
Query: 722 GFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAV 781
G TN +R+DT++H LFYPQ+PL T + Y H LP GQN VA+
Sbjct: 730 GVYITNYQLRMDTMAHVLFYPQKPLVTTRSME------YLHFRELPA-----GQNVCVAI 778
Query: 782 NVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSK 841
+ GYNQEDS+++N+++++RG+FRS R+YK E K+ + + +
Sbjct: 779 ACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDE-QKKQTSLMEEVFEKPERDTCAGMR 837
Query: 842 IGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------DSGA--------DHSIKLKHTER 886
G + +DDDG G + DI+IGK D G D S L+ +E
Sbjct: 838 HGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLGPKTRRHTKRDSSTALRSSET 897
Query: 887 GMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGI 946
G+V +V+L+++ +G F V +R +R P +GDKFSS HGQKG G QE+ PFT++GI
Sbjct: 898 GIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCGMAYRQEDLPFTVEGI 957
Query: 947 VPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLH 1006
VPDI++NPHA PSR T GQ +G + ATPF +V+AI++ LH
Sbjct: 958 VPDIIVNPHAIPSRMTIGQLIECLLGKVSAS------TGDEGDATPFTDVTVEAISQALH 1011
Query: 1007 RAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVA 1066
+ G+ G E +Y+G TG + + IFIGPT+YQRL HM +DK+ R+ GPV LTRQPV
Sbjct: 1012 KIGYQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVE 1071
Query: 1067 DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXX 1126
R R GG++FGEMERDC+I+HGAA L ERLF SDSY++HIC C +A +
Sbjct: 1072 GRSRDGGLRFGEMERDCMISHGAAQFLKERLFDQSDSYRVHICDICGLIA-IANLKKNSF 1130
Query: 1127 XXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
CR C + I + +PY AKLL QEL SM I + T+
Sbjct: 1131 E------CRRCKNKTQISQIRMPYAAKLLFQELMSMSIAPRMFTQ 1169
>TAIR|locus:2119013 [details] [associations]
symbol:NRPB2 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0000394 "RNA splicing,
via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0009506
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006351 EMBL:AL161555 EMBL:AL035527 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 EMBL:Z19120 EMBL:Z19121 IPI:IPI00524372
PIR:T05846 RefSeq:NP_193902.1 UniGene:At.112
ProteinModelPortal:P38420 STRING:P38420 PaxDb:P38420 PRIDE:P38420
EnsemblPlants:AT4G21710.1 GeneID:828259 KEGG:ath:AT4G21710
TAIR:At4g21710 HOGENOM:HOG000218612 InParanoid:P38420 KO:K03010
OMA:IMIVFRA PhylomeDB:P38420 ProtClustDB:CLSN2685591
Genevestigator:P38420 GermOnline:AT4G21710 Uniprot:P38420
Length = 1188
Score = 1452 (516.2 bits), Expect = 1.0e-148, P = 1.0e-148
Identities = 390/1191 (32%), Positives = 596/1191 (50%)
Query: 29 AAVS-FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG--YDPSKKGEGEWRYAS 85
A +S +F E GLV Q++S++EFI+N +Q+ D + + P ++P + +
Sbjct: 28 AVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYK 87
Query: 86 MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
+ FGQ+ L KP + G+ +FP+ ARL+N+TYS+ + V V +V + + +
Sbjct: 88 ISFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 146
Query: 146 TG--REQYIQKE--VLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGA 201
T + +I K +L + + + C ++G +G ++
Sbjct: 147 TQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGEC---PYDQGGYFIINGSEKVLIAQ 203
Query: 202 EKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---NRLIVRLVDMSKFEDIKGGEKV-L 257
EK+ + KR + V +EN+ + + VR++ + + G+ +
Sbjct: 204 EKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRC 263
Query: 258 SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
++ ++ TEIPI I+F ALG +DK+I+ I + D ++ +L S+ +A +
Sbjct: 264 TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAF----VIQNQ 319
Query: 318 RNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL----HGTKQKARFLGYMVKCL 368
AL Y+ K +G T + + + + P + H +KA + GY++ L
Sbjct: 320 LVALDYIGK--RGATVGVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRL 377
Query: 369 LQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVRPI 428
L GRR D+RD + NK ++ + + +Q+ + + V +
Sbjct: 378 LLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVN-L 436
Query: 429 EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
++ + A +T+GL + +TG W R +G+ L R TL LRR +
Sbjct: 437 QFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGR 495
Query: 489 TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGME 547
GK+ R H S WG +C TP+G+ CGLVKNL + ++ S PI E L G E
Sbjct: 496 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 555
Query: 548 KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEV 607
+ + + K+FV+G W+GV +D V T+V + RD E+
Sbjct: 556 NFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 615
Query: 608 RIFMDAGRILRPLLVVENMG------KIKSLEGKNYT----FQALLDHGIIELVGTEEEE 657
RI+ D GR RPL +V+N I +L+ + + L+ G IE + TEEEE
Sbjct: 616 RIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEEE 675
Query: 658 DCCTAWGIKYLLKDI---EDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
+ I L++ E+ +THCE+ S +LG+ IIPF +H+ + R YQS
Sbjct: 676 TTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 735
Query: 715 KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNG 774
QA+G TN R+DTL++ L+YPQ+PL T + H H P G
Sbjct: 736 M-GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME--------HLHFRQLPA---G 783
Query: 775 QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN 834
NAIVA++ + GYNQEDS++MN++S++RG FRS RSY+ E K+M + +
Sbjct: 784 INAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE--EKKMGTLVKEDFGRPD 841
Query: 835 FGKIQS-KIGRVDSLDDDGFPFIGANLQSGDIVIGKYA----DSGA---------DHSIK 880
G + G D LDDDG G + D++IGK D DHSI
Sbjct: 842 RGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSIS 901
Query: 881 LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFP 940
L+H+E GMV +V+L++N DG F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 902 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 961
Query: 941 FTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDA 1000
+TI+G+ PDI++NPHA PSR T GQ G + ATPF +VD
Sbjct: 962 WTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM------GKEGDATPFTDVTVDN 1015
Query: 1001 ITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPL 1060
I++ LH+ G+ G ER+Y+G TG + ++IF+GPT+YQRL HM +DK+ R GPV L
Sbjct: 1016 ISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1075
Query: 1061 TRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQ 1120
TRQP R R GG++FGEMERDC+IAHGAA L ERLF SD+Y++H+C C +A +
Sbjct: 1076 TRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIA-IAN 1134
Query: 1121 XXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
CR C + DIV+ +PY KLL QEL SM I + T+
Sbjct: 1135 LKKNSFE------CRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTK 1179
>UNIPROTKB|F1NCB0 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 GeneTree:ENSGT00690000102234
EMBL:AADN02009110 EMBL:AADN02009111 IPI:IPI00823005
Ensembl:ENSGALT00000037965 ArrayExpress:F1NCB0 Uniprot:F1NCB0
Length = 1174
Score = 1323 (470.8 bits), Expect = 4.7e-135, P = 4.7e-135
Identities = 393/1211 (32%), Positives = 594/1211 (49%)
Query: 2 DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDS 61
D DD+ T P DL +E C S+F+E GLV Q++S++EFI+ +Q+ +
Sbjct: 11 DEDDDEIT-P----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61
Query: 62 FGETIVEPGYDPSKKGEGEW--RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNM 119
++ + GE E RY ++F Q+ L KP+ + +G M P ARL+N+
Sbjct: 62 APPIDLQAEAQHAT-GEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNL 118
Query: 120 TYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ-YIQKEVLSDETTNIIIGRIPVMVKSDLC 178
TYS+ + V + V + D+ +T ++ +I K + +T ++ + DLC
Sbjct: 119 TYSAPLYVDITKTVIKEGE---DQLQTQHQKTFIGKIPIMLRSTYCLLNGL---TDRDLC 172
Query: 179 WMKG--VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKR--LWVSNSMGWTVAYKSENKR 234
+ ++ G +G ++ EK+ + K+ + + S
Sbjct: 173 ELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPT 232
Query: 235 NRLIVRLVDMSKFEDIKG--GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTC 291
+ + V ++ K G+++++ ++ E+PI I+F ALG SD++I+ I +
Sbjct: 233 STIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDF 292
Query: 292 EDCSILNILFASIHDA-----DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTY 346
ED ++ ++ S+ +A N F R A V K K + E ++ M +
Sbjct: 293 EDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKE-KRIKYAK-EVLQKEMLPH 350
Query: 347 LFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAH 406
+ S +KA FLGYMV LL A GRR+ D+RD + NK + +
Sbjct: 351 VGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKN 410
Query: 407 ARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVAN 466
K + Q+ + + +E + I+++GL + +TG W K + +G+
Sbjct: 411 LLKEVRIYAQKFIDRGKDFN-LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQV 469
Query: 467 LGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVT 526
L R TL LRR + GK+ R H + WG +C TP+G GLVKNL +
Sbjct: 470 LNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALM 529
Query: 527 GLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXX 585
+S S PI E L ME L + + ++ K+FV+G W+G+ KD ++
Sbjct: 530 AYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRK 589
Query: 586 XXXXXXX-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGK 635
++V + RD + E+RI+ DAGRI RPLL+VE ++ ++K E
Sbjct: 590 LRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYN 649
Query: 636 NYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLG 692
NY++Q L+ G++E + T EEE A D+++K +THCE+ S +LG
Sbjct: 650 NYSWQDLVASGVVEYIDTLEEETVMLAM----TPDDLQEKGVAYCSTYTHCEIHPSMILG 705
Query: 693 LSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMIS 752
+ IIPF +H+ + R YQS QA+G TN +R+DTL+H L+YPQ+PL T
Sbjct: 706 VCASIIPFPDHNQSPRNTYQSAM-GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSM 764
Query: 753 DCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 812
+ Y L EL G N+IVA+ + GYNQEDS++MNR++++RG FRS RS
Sbjct: 765 E------Y-----LRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRS 813
Query: 813 YKAEVDNK---EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK 869
YK + K + +V + + + G ++ I D LDDDG G + D++IGK
Sbjct: 814 YKEQESKKGYDQEEVFEKPTRETCQ-G-MRHAI--YDKLDDDGLIAPGVRVSGDDVIIGK 869
Query: 870 YAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSP 914
+ D S L+ +E G+V +V+++ N +G F + +R VR P
Sbjct: 870 TVTLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIP 929
Query: 915 CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXX 974
+GDKF+S HGQKG G QE+ PFT +GI PDI+INPHA PSR T G
Sbjct: 930 QIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKV 989
Query: 975 XXXXXXXXCSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFI 1033
G ATPF +V I+ L G+ G E LY+G TG + S IFI
Sbjct: 990 SAN------KGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFI 1043
Query: 1034 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1093
GPT+YQRL HM +DK+ R GP+ L RQP+ R R GG++FGEMERDC IAHGAA L
Sbjct: 1044 GPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFL 1103
Query: 1094 HERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAK 1153
ERLF SD YQ+H+C C +A + CR C + I +PY K
Sbjct: 1104 RERLFEASDPYQVHVCNLCGIMA-IANTRTHTYE------CRGCRNKTQISLVRMPYACK 1156
Query: 1154 LLCQELFSMGI 1164
LL QEL SM I
Sbjct: 1157 LLFQELMSMSI 1167
>FB|FBgn0262955 [details] [associations]
symbol:RpII140 "RNA polymerase II 140kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISS;NAS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS;NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:AE014297 GO:GO:0046872
GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:X05709
EMBL:BT003265 EMBL:M62972 PIR:A27826 RefSeq:NP_476706.1
UniGene:Dm.6926 ProteinModelPortal:P08266 DIP:DIP-17498N
MINT:MINT-1578011 STRING:P08266 PaxDb:P08266
EnsemblMetazoa:FBtr0082892 GeneID:41721 KEGG:dme:Dmel_CG3180
CTD:41721 FlyBase:FBgn0262955 InParanoid:P08266 OrthoDB:EOG4G1JX8
PhylomeDB:P08266 ChiTaRS:RpII140 GenomeRNAi:41721 NextBio:825231
Bgee:P08266 GermOnline:CG3180 Uniprot:P08266
Length = 1176
Score = 1249 (444.7 bits), Expect = 3.3e-127, P = 3.3e-127
Identities = 332/948 (35%), Positives = 486/948 (51%)
Query: 253 GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA---- 307
G++++++ ++ EIPI I+F ALG +D++I+ I + +D ++ ++ S+ +A
Sbjct: 254 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQ 313
Query: 308 -DNKCDEFRKGRNALKYV--DKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYM 364
N F R A V DK IK E ++ M ++ S +KA FLGYM
Sbjct: 314 EQNVALNFIGARGARPGVTKDKRIKYAK----EILQKEMLPHVGVSDFCETKKAYFLGYM 369
Query: 365 VKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRT 424
V LL A GRR+ D+RD + NK + + K + Q+ + +
Sbjct: 370 VHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKD 429
Query: 425 VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
+E + +I+T+GL + +TG W K + +G+ L R TL LRR
Sbjct: 430 FN-LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNS 488
Query: 485 QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFN 543
+ GK+ R H + WG +C TP+G GLVKNL + +S S PI E L
Sbjct: 489 PIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 548
Query: 544 SGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIKRDE 602
ME L + A ++ K+FV+G W+G+ +D ++ ++V + RD
Sbjct: 549 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDI 608
Query: 603 LQSEVRIFMDAGRILRPLLVVEN----MGK-----IKSLEGKNYTFQALLDHGIIELVGT 653
E+RI+ DAGRI RPLL+VEN + K +K + NY++Q L+ G++E + T
Sbjct: 609 RDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDT 668
Query: 654 EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
EEE A L +D + +THCE+ + +LG+ IIPF +H+ + R YQS
Sbjct: 669 LEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQS 728
Query: 714 QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
QA+G TN +R+DTL+H L+YP +PL T + Y L EL
Sbjct: 729 AM-GKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSME------Y-----LRFRELPA 776
Query: 774 GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMV 833
G N+IVA+ + GYNQEDS+++N +++ERG FRS RSYK + +NK + + + +
Sbjct: 777 GINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYK-DSENKRVG-DQEENFEKP 834
Query: 834 NFGKIQS-KIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------DSGA------DH 877
+ G Q + D LDDDG G + D+VIGK DS D
Sbjct: 835 HRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDA 894
Query: 878 SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE 937
S L+++E G+V +V+L+ N +G F + +R VR P +GDKF+S HGQKG G QE
Sbjct: 895 STFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 954
Query: 938 NFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATP- 996
+ FT +G+ PDI+INPHA PSR T G G ATPF
Sbjct: 955 DMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSN------KGEIGDATPFNDAV 1008
Query: 997 SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
+V I+ L G+ G E +Y+G TG + + +F+GPT+YQRL HM +DK+ R GP
Sbjct: 1009 NVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGP 1068
Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
V L RQP+ R R GG++FGEMERDC I+HGAA L ERLF +SD Y++HIC C +A
Sbjct: 1069 VQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIA 1128
Query: 1117 NVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
+ C+ C + I + +PY AKLL QEL SM I
Sbjct: 1129 -IANLRNNTFE------CKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1169
Score = 580 (209.2 bits), Expect = 9.9e-53, P = 9.9e-53
Identities = 184/638 (28%), Positives = 308/638 (48%)
Query: 16 DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
++ E + C ++F+E GLV Q++S++EFI+ +Q+ DS + S
Sbjct: 17 EISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTS 76
Query: 75 KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
+ E R+ S++F Q+ L KP+ + +G M P ARL+N+TYS+ + V +
Sbjct: 77 GEVETPPRF-SLKFEQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI----- 129
Query: 135 TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
T K G + E +T IG+IP+M++S C + + E +C
Sbjct: 130 -----TKTKNVEGLDPV---ETQHQKT---FIGKIPIMLRSTYCLLSQLTDRDLTELNEC 178
Query: 189 DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR-----NRLIVRL-V 242
D GGYFII G+EKV +AQE++ ++V + A+K+E + +R L V
Sbjct: 179 PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWV 238
Query: 243 DMSK--FEDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
+M ++IK G++++++ ++ EIPI I+F ALG +D++I+ I + +D +
Sbjct: 239 NMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 298
Query: 297 LNILFASIHDADNKCDEFRKGRNALKYVDK--LIKGTTFPPG-ESTEECMNTYLFPSLHG 353
+ ++ S+ +A ++ AL ++ G T + +E + + P +
Sbjct: 299 MEMVKPSLDEAF----VVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGV 354
Query: 354 TK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARK 409
+ +KA FLGYMV LL A GRR+ D+RD + NK + + K
Sbjct: 355 SDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMK 414
Query: 410 RMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGR 469
+ Q+ + + +E + +I+T+GL + +TG W K + +G+ L R
Sbjct: 415 EVRMYTQKFIDRGKDFN-LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNR 473
Query: 470 ANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLV 529
TL LRR + GK+ R H + WG +C TP+G GLVKNL + +
Sbjct: 474 LTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYI 533
Query: 530 ST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXX 588
S S PI E L ME L + A ++ K+FV+G W+G+ +D ++
Sbjct: 534 SVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRR 593
Query: 589 XXXX-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN 625
++V + RD E+RI+ DAGRI RPLL+VEN
Sbjct: 594 QMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEN 631
>WB|WBGene00016140 [details] [associations]
symbol:rpb-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0016477 "cell
migration" evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:FO080680 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA EMBL:U10333 PIR:E88445
PIR:T43701 RefSeq:NP_498047.1 ProteinModelPortal:Q10578 SMR:Q10578
STRING:Q10578 PaxDb:Q10578 EnsemblMetazoa:C26E6.4.1
EnsemblMetazoa:C26E6.4.2 GeneID:175668 KEGG:cel:CELE_C26E6.4
CTD:175668 WormBase:C26E6.4 GeneTree:ENSGT00690000102234
HOGENOM:HOG000222962 InParanoid:Q10578 NextBio:889138
Uniprot:Q10578
Length = 1193
Score = 1238 (440.9 bits), Expect = 4.8e-126, P = 4.8e-126
Identities = 326/953 (34%), Positives = 488/953 (51%)
Query: 253 GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA---- 307
G++++ + ++ EIPI I+F ALG SD++I+ I + D ++ ++ S+ +A
Sbjct: 259 GQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEAFVIQ 318
Query: 308 -DNKCDEFRKGRNALKYV--DKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYM 364
N F R A V ++ IK E ++ + ++ S H +KA F+GYM
Sbjct: 319 EQNVALNFIGARGAKPGVTREQRIKYAR----EILQKELLPHVGVSEHCETKKAFFIGYM 374
Query: 365 VKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRT 424
V LL A GRR+ D+RD NK + + K M Q+ + +
Sbjct: 375 VHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKNDD 434
Query: 425 VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
++ + S +T GL+ + +TG W K + +G+ L R TL LRR
Sbjct: 435 FA-LDVCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANS 493
Query: 485 QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFN 543
+ GK+ R H + WG +C TP+G+ GLVKNL + +S S+ EPI E L
Sbjct: 494 PIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEE 553
Query: 544 SGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIKRDE 602
ME L + + ++ K+FV+G W+G+ ++ ++ ++V + RD
Sbjct: 554 WSMENLEEVSPSAIADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDI 613
Query: 603 LQSEVRIFMDAGRILRPLLVVEN---------MGKIKSL--EGKNYTFQALLDHGIIELV 651
E+RI+ DAGR+ RPLL+VEN + ++K E YT+ L+ G++EL+
Sbjct: 614 RDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELI 673
Query: 652 GTEEEEDCCTAWGIKYLLKDIEDKKPIK-FTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
+ EEE T+ I + +D+ THCE+ + +LG+ IIPF +H+ + R
Sbjct: 674 DSMEEE---TSM-IAMMPEDLRSGGYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNT 729
Query: 711 YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
YQS QA+G TTN +R+DTL+H L+YPQ+PL T + L N E
Sbjct: 730 YQSAM-GKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR-----FN------E 777
Query: 771 LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK---AEVDNKEMQVKRR 827
L G NAIVA+ + GYNQEDS++MN ++++RG+FRS RSY+ A +DN ++ +
Sbjct: 778 LPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEK 837
Query: 828 SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-----DSGADHSIK-- 880
+ + + G S D LD+DG G + D++IGK D D S K
Sbjct: 838 PTREKCS-GMRHSLY---DKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKY 893
Query: 881 --------LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGF 932
L+ +E G+V +V+LS N DG F + +R VR P +GDKF+S HGQKG +G
Sbjct: 894 PKRDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGI 953
Query: 933 LESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATP 992
+ QE+ PFT +G+ PDI+INPHA PSR T G G ATP
Sbjct: 954 MYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSAN------KGEIGDATP 1007
Query: 993 FA-TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
F T +V I+ L G+ G E +Y+G TG+ + + IF GPT+YQRL HM +DK+
Sbjct: 1008 FNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHS 1067
Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
R GP+ + RQP+ R R GG++FGEMERDC I+HGA L ERLF +SD Y +++C
Sbjct: 1068 RARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNN 1127
Query: 1112 CKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
C + V+ C+ C + + +PY KLL QEL SM I
Sbjct: 1128 CGLI--VVANLRTNSFE-----CKACRNKTQVSAVRIPYACKLLFQELMSMSI 1173
Score = 599 (215.9 bits), Expect = 8.7e-55, P = 8.7e-55
Identities = 185/656 (28%), Positives = 309/656 (47%)
Query: 2 DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
D D + D + ++ E + C ++F+E GLV Q++S++EF++ +Q+ D
Sbjct: 11 DPMDGDYIDDSD--EISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVED 68
Query: 61 SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
S + E ++ S++F Q+ L KP+ + +G M P ARL+N+T
Sbjct: 69 SPPVELQSENQHLGTDMENPAKF-SLKFNQIYLSKPTHWEKDGAPM-PMMPNEARLRNLT 126
Query: 121 YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
Y+S + V + K VT D T E + D+ + +G++PVM++S C +
Sbjct: 127 YASPLYVDIT------KVVTRDDSAT--------EKVYDK---VFVGKVPVMLRSSYCML 169
Query: 181 KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE--- 231
+ E +C D GGYF+I G+EKV +AQE++ ++V + A+K+E
Sbjct: 170 SNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTECRS 229
Query: 232 ---NKRNRLIVRLVDMSKFEDIKG-----GEKVLSVY-FLSTEIPIWILFFALGVSSDKE 282
N V+M G G++++ + ++ EIPI I+F ALG SD++
Sbjct: 230 CLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRD 289
Query: 283 IVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-- 340
I+ I + D ++ ++ S+ +A ++ AL ++ +G PG + E
Sbjct: 290 ILGHIIYDFNDPEMMEMVKPSLDEAF----VIQEQNVALNFIGA--RGAK--PGVTREQR 341
Query: 341 -----ECMNTYLFP----SLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXX 391
E + L P S H +KA F+GYMV LL A GRR+ D+RD NK
Sbjct: 342 IKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDL 401
Query: 392 XXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWS 451
+ + K M Q+ + + ++ + S +T GL+ + +TG W
Sbjct: 402 AGPLLAFLFRSLFRNLLKEMRMTAQKYINKNDDFA-LDVCVKTSTITRGLTYSLATGNWG 460
Query: 452 HPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLST 511
K + +G+ L R TL LRR + GK+ R H + WG +C T
Sbjct: 461 DQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAET 520
Query: 512 PDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWI 570
P+G+ GLVKNL + +S S+ EPI E L ME L + + ++ K+FV+G W+
Sbjct: 521 PEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFVNGAWV 580
Query: 571 GVCKDSLSFVSXXXXXXXXXXX-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN 625
G+ ++ ++ ++V + RD E+RI+ DAGR+ RPLL+VEN
Sbjct: 581 GIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVEN 636
>UNIPROTKB|A5PJW8 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:DAAA02017743
EMBL:BC142267 IPI:IPI00701366 RefSeq:NP_001092552.1
UniGene:Bt.103151 STRING:A5PJW8 Ensembl:ENSBTAT00000025800
GeneID:538184 KEGG:bta:538184 InParanoid:A5PJW8 NextBio:20877300
Uniprot:A5PJW8
Length = 1174
Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
Identities = 335/951 (35%), Positives = 484/951 (50%)
Query: 253 GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA---- 307
G+++++ ++ E+PI I+F ALG SD++I+ I + ED ++ ++ S+ +A
Sbjct: 253 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ 312
Query: 308 -DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVK 366
N F R A V K K + E ++ M ++ S +KA FLGYMV
Sbjct: 313 EQNVALNFIGSRGAKPGVTKE-KRIKYAK-EVLQKEMLPHVGVSDFCETKKAYFLGYMVH 370
Query: 367 CLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVR 426
LL A GRR+ D+RD + NK + + K + Q+ + +
Sbjct: 371 RLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFN 430
Query: 427 PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
+E + I+++GL + +TG W K + +G+ L R TL LRR +
Sbjct: 431 -LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 489
Query: 487 QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
GK+ R H + WG +C TP+G GLVKNL + +S S PI E L
Sbjct: 490 GRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWS 549
Query: 546 MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIKRDELQ 604
ME L + + ++ K+FV+G W+G+ KD ++ ++V + RD +
Sbjct: 550 MENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIRE 609
Query: 605 SEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEE 655
E+RI+ DAGRI RPLL+VE ++ ++K E NY++Q L+ G++E + T E
Sbjct: 610 REIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLE 669
Query: 656 EEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
EE A D+++K+ +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 670 EETVMLAM----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQ 725
Query: 713 SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
S QA+G TN +R+DTL+H L+YPQ+PL T + Y L EL
Sbjct: 726 SAM-GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME------Y-----LRFRELP 773
Query: 773 NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK---EMQVKRRSS 829
G N+IVA+ + GYNQEDS++MNR++++RG FRS RSYK + K + +V + +
Sbjct: 774 AGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPT 833
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--------SGA------ 875
+ G ++ I D LDDDG G + D++IGK G
Sbjct: 834 RETCQ-G-MRHAI--YDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTK 889
Query: 876 -DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
D S L+ +E G+V +V+++ N +G F + +R VR P +GDKF+S HGQKG G
Sbjct: 890 RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949
Query: 935 SQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFA 994
QE+ PFT +GI PDI+INPHA PSR T G G ATPF
Sbjct: 950 RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSAN------KGEIGDATPFN 1003
Query: 995 TP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
+V I+ L G+ G E LY+G TG + S IFIGPT+YQRL HM +DK+ R
Sbjct: 1004 DAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063
Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
GP+ L RQP+ R R GG++FGEMERDC IAHGAA L ERLF SD YQ+H+C C
Sbjct: 1064 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1123
Query: 1114 NVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
+A + CR C + I +PY KLL QEL SM I
Sbjct: 1124 IMA-IANTRTHTYE------CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167
Score = 574 (207.1 bits), Expect = 4.5e-52, P = 4.5e-52
Identities = 182/625 (29%), Positives = 297/625 (47%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP-GYDPSKKGEGEWRYASMRFGQ 90
S+F+E GLV Q++S++EFI+ +Q+ + ++ S + E RY ++F Q
Sbjct: 32 SYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYL-LKFEQ 90
Query: 91 VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
+ L KP+ + +G M P ARL+N+TYS+ + V + T K G EQ
Sbjct: 91 IYLSKPTHWERDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTVIKEGEEQ 139
Query: 151 YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKV 204
L + IG+IP+M++S C + G+ E +C D GGYFII G+EKV
Sbjct: 140 ------LQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKV 193
Query: 205 FVAQEQICLKRLWV----SNSMGWTVAYKS--ENKRNRLIVRLVDMSKF--EDIKG---G 253
+AQE++ ++V + +T +S EN V M + K G
Sbjct: 194 LIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIG 253
Query: 254 EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
+++++ ++ E+PI I+F ALG SD++I+ I + ED ++ ++ S+ +A
Sbjct: 254 QRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAF---- 309
Query: 313 EFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK----QKARFL 361
++ AL ++ +G PG + E E + + P + + +KA FL
Sbjct: 310 VIQEQNVALNFIGS--RGAK--PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFL 365
Query: 362 GYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYG 421
GYMV LL A GRR+ D+RD + NK + + K + Q+ +
Sbjct: 366 GYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR 425
Query: 422 DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
+ +E + I+++GL + +TG W K + +G+ L R TL LRR
Sbjct: 426 GKDFN-LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 482 TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ 540
+ GK+ R H + WG +C TP+G GLVKNL + +S S PI E
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 541 LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIK 599
L ME L + + ++ K+FV+G W+G+ KD ++ ++V +
Sbjct: 545 LEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMI 604
Query: 600 RDELQSEVRIFMDAGRILRPLLVVE 624
RD + E+RI+ DAGRI RPLL+VE
Sbjct: 605 RDIREREIRIYTDAGRICRPLLIVE 629
>UNIPROTKB|E2RNN5 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0004672 "protein
kinase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:AAEX03009093 RefSeq:XP_532382.2 ProteinModelPortal:E2RNN5
Ensembl:ENSCAFT00000003641 GeneID:475152 KEGG:cfa:475152
Uniprot:E2RNN5
Length = 1174
Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
Identities = 335/951 (35%), Positives = 484/951 (50%)
Query: 253 GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA---- 307
G+++++ ++ E+PI I+F ALG SD++I+ I + ED ++ ++ S+ +A
Sbjct: 253 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ 312
Query: 308 -DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVK 366
N F R A V K K + E ++ M ++ S +KA FLGYMV
Sbjct: 313 EQNVALNFIGSRGAKPGVTKE-KRIKYAK-EVLQKEMLPHVGVSDFCETKKAYFLGYMVH 370
Query: 367 CLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVR 426
LL A GRR+ D+RD + NK + + K + Q+ + +
Sbjct: 371 RLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFN 430
Query: 427 PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
+E + I+++GL + +TG W K + +G+ L R TL LRR +
Sbjct: 431 -LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 489
Query: 487 QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
GK+ R H + WG +C TP+G GLVKNL + +S S PI E L
Sbjct: 490 GRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWS 549
Query: 546 MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIKRDELQ 604
ME L + + ++ K+FV+G W+G+ KD ++ ++V + RD +
Sbjct: 550 MENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIRE 609
Query: 605 SEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEE 655
E+RI+ DAGRI RPLL+VE ++ ++K E NY++Q L+ G++E + T E
Sbjct: 610 REIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLE 669
Query: 656 EEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
EE A D+++K+ +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 670 EETVMLAM----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQ 725
Query: 713 SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
S QA+G TN +R+DTL+H L+YPQ+PL T + Y L EL
Sbjct: 726 SAM-GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME------Y-----LRFRELP 773
Query: 773 NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK---EMQVKRRSS 829
G N+IVA+ + GYNQEDS++MNR++++RG FRS RSYK + K + +V + +
Sbjct: 774 AGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPT 833
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--------SGA------ 875
+ G ++ I D LDDDG G + D++IGK G
Sbjct: 834 RETCQ-G-MRHAI--YDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTK 889
Query: 876 -DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
D S L+ +E G+V +V+++ N +G F + +R VR P +GDKF+S HGQKG G
Sbjct: 890 RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949
Query: 935 SQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFA 994
QE+ PFT +GI PDI+INPHA PSR T G G ATPF
Sbjct: 950 RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSAN------KGEIGDATPFN 1003
Query: 995 TP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
+V I+ L G+ G E LY+G TG + S IFIGPT+YQRL HM +DK+ R
Sbjct: 1004 DAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063
Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
GP+ L RQP+ R R GG++FGEMERDC IAHGAA L ERLF SD YQ+H+C C
Sbjct: 1064 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1123
Query: 1114 NVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
+A + CR C + I +PY KLL QEL SM I
Sbjct: 1124 IMA-IANTRTHTYE------CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167
Score = 574 (207.1 bits), Expect = 4.5e-52, P = 4.5e-52
Identities = 182/625 (29%), Positives = 297/625 (47%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP-GYDPSKKGEGEWRYASMRFGQ 90
S+F+E GLV Q++S++EFI+ +Q+ + ++ S + E RY ++F Q
Sbjct: 32 SYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYL-LKFEQ 90
Query: 91 VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
+ L KP+ + +G M P ARL+N+TYS+ + V + T K G EQ
Sbjct: 91 IYLSKPTHWERDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTVIKEGEEQ 139
Query: 151 YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKV 204
L + IG+IP+M++S C + G+ E +C D GGYFII G+EKV
Sbjct: 140 ------LQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKV 193
Query: 205 FVAQEQICLKRLWV----SNSMGWTVAYKS--ENKRNRLIVRLVDMSKF--EDIKG---G 253
+AQE++ ++V + +T +S EN V M + K G
Sbjct: 194 LIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIG 253
Query: 254 EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
+++++ ++ E+PI I+F ALG SD++I+ I + ED ++ ++ S+ +A
Sbjct: 254 QRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAF---- 309
Query: 313 EFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK----QKARFL 361
++ AL ++ +G PG + E E + + P + + +KA FL
Sbjct: 310 VIQEQNVALNFIGS--RGAK--PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFL 365
Query: 362 GYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYG 421
GYMV LL A GRR+ D+RD + NK + + K + Q+ +
Sbjct: 366 GYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR 425
Query: 422 DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
+ +E + I+++GL + +TG W K + +G+ L R TL LRR
Sbjct: 426 GKDFN-LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 482 TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ 540
+ GK+ R H + WG +C TP+G GLVKNL + +S S PI E
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 541 LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIK 599
L ME L + + ++ K+FV+G W+G+ KD ++ ++V +
Sbjct: 545 LEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMI 604
Query: 600 RDELQSEVRIFMDAGRILRPLLVVE 624
RD + E+RI+ DAGRI RPLL+VE
Sbjct: 605 RDIREREIRIYTDAGRICRPLLIVE 629
>UNIPROTKB|I3LGP4 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:FP476021 EMBL:CU984592 RefSeq:XP_003129085.2 UniGene:Ssc.55326
Ensembl:ENSSSCT00000023257 GeneID:397001 KEGG:ssc:397001
Uniprot:I3LGP4
Length = 1167
Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
Identities = 335/951 (35%), Positives = 484/951 (50%)
Query: 253 GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA---- 307
G+++++ ++ E+PI I+F ALG SD++I+ I + ED ++ ++ S+ +A
Sbjct: 246 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ 305
Query: 308 -DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVK 366
N F R A V K K + E ++ M ++ S +KA FLGYMV
Sbjct: 306 EQNVALNFIGSRGAKPGVTKE-KRIKYAK-EVLQKEMLPHVGVSDFCETKKAYFLGYMVH 363
Query: 367 CLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVR 426
LL A GRR+ D+RD + NK + + K + Q+ + +
Sbjct: 364 RLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFN 423
Query: 427 PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
+E + I+++GL + +TG W K + +G+ L R TL LRR +
Sbjct: 424 -LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 482
Query: 487 QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
GK+ R H + WG +C TP+G GLVKNL + +S S PI E L
Sbjct: 483 GRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWS 542
Query: 546 MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIKRDELQ 604
ME L + + ++ K+FV+G W+G+ KD ++ ++V + RD +
Sbjct: 543 MENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIRE 602
Query: 605 SEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEE 655
E+RI+ DAGRI RPLL+VE ++ ++K E NY++Q L+ G++E + T E
Sbjct: 603 REIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLE 662
Query: 656 EEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
EE A D+++K+ +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 663 EETVMLAM----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQ 718
Query: 713 SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
S QA+G TN +R+DTL+H L+YPQ+PL T + Y L EL
Sbjct: 719 SAM-GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME------Y-----LRFRELP 766
Query: 773 NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK---EMQVKRRSS 829
G N+IVA+ + GYNQEDS++MNR++++RG FRS RSYK + K + +V + +
Sbjct: 767 AGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPT 826
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--------SGA------ 875
+ G ++ I D LDDDG G + D++IGK G
Sbjct: 827 RETCQ-G-MRHAI--YDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTK 882
Query: 876 -DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
D S L+ +E G+V +V+++ N +G F + +R VR P +GDKF+S HGQKG G
Sbjct: 883 RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 942
Query: 935 SQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFA 994
QE+ PFT +GI PDI+INPHA PSR T G G ATPF
Sbjct: 943 RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSAN------KGEIGDATPFN 996
Query: 995 TP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
+V I+ L G+ G E LY+G TG + S IFIGPT+YQRL HM +DK+ R
Sbjct: 997 DAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1056
Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
GP+ L RQP+ R R GG++FGEMERDC IAHGAA L ERLF SD YQ+H+C C
Sbjct: 1057 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1116
Query: 1114 NVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
+A + CR C + I +PY KLL QEL SM I
Sbjct: 1117 IMA-IANTRTHTYE------CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1160
Score = 574 (207.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 182/625 (29%), Positives = 297/625 (47%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP-GYDPSKKGEGEWRYASMRFGQ 90
S+F+E GLV Q++S++EFI+ +Q+ + ++ S + E RY ++F Q
Sbjct: 25 SYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYL-LKFEQ 83
Query: 91 VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
+ L KP+ + +G M P ARL+N+TYS+ + V + T K G EQ
Sbjct: 84 IYLSKPTHWERDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTVIKEGEEQ 132
Query: 151 YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKV 204
L + IG+IP+M++S C + G+ E +C D GGYFII G+EKV
Sbjct: 133 ------LQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKV 186
Query: 205 FVAQEQICLKRLWV----SNSMGWTVAYKS--ENKRNRLIVRLVDMSKF--EDIKG---G 253
+AQE++ ++V + +T +S EN V M + K G
Sbjct: 187 LIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIG 246
Query: 254 EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
+++++ ++ E+PI I+F ALG SD++I+ I + ED ++ ++ S+ +A
Sbjct: 247 QRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAF---- 302
Query: 313 EFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK----QKARFL 361
++ AL ++ +G PG + E E + + P + + +KA FL
Sbjct: 303 VIQEQNVALNFIGS--RGAK--PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFL 358
Query: 362 GYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYG 421
GYMV LL A GRR+ D+RD + NK + + K + Q+ +
Sbjct: 359 GYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR 418
Query: 422 DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
+ +E + I+++GL + +TG W K + +G+ L R TL LRR
Sbjct: 419 GKDFN-LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 477
Query: 482 TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ 540
+ GK+ R H + WG +C TP+G GLVKNL + +S S PI E
Sbjct: 478 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 537
Query: 541 LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIK 599
L ME L + + ++ K+FV+G W+G+ KD ++ ++V +
Sbjct: 538 LEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMI 597
Query: 600 RDELQSEVRIFMDAGRILRPLLVVE 624
RD + E+RI+ DAGRI RPLL+VE
Sbjct: 598 RDIREREIRIYTDAGRICRPLLIVE 622
>UNIPROTKB|C9J2Y9 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HGNC:HGNC:9188 IPI:IPI00894141 ProteinModelPortal:C9J2Y9
STRING:C9J2Y9 Ensembl:ENST00000441246 ArrayExpress:C9J2Y9
Bgee:C9J2Y9 Uniprot:C9J2Y9
Length = 1167
Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
Identities = 334/951 (35%), Positives = 484/951 (50%)
Query: 253 GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA---- 307
G+++++ ++ E+PI I+F ALG SD++I+ I + ED ++ ++ S+ +A
Sbjct: 246 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ 305
Query: 308 -DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVK 366
N F R A V K K + E ++ M ++ S +KA FLGYMV
Sbjct: 306 EQNVALNFIGSRGAKPGVTKE-KRIKYAK-EVLQKEMLPHVGVSDFCETKKAYFLGYMVH 363
Query: 367 CLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVR 426
LL A GRR+ D+RD + NK + + K + Q+ + +
Sbjct: 364 RLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFN 423
Query: 427 PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
+E + I+++GL + +TG W K + +G+ L R TL LRR +
Sbjct: 424 -LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 482
Query: 487 QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
GK+ R H + WG +C TP+G GLVKNL + +S S PI E L
Sbjct: 483 GRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWS 542
Query: 546 MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIKRDELQ 604
ME L + + ++ K+FV+G W+G+ KD ++ ++V + RD +
Sbjct: 543 MENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIRE 602
Query: 605 SEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEE 655
E+RI+ DAGRI RPLL+VE ++ ++K E NY++Q L+ G++E + T E
Sbjct: 603 REIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLE 662
Query: 656 EEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
EE A D+++K+ +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 663 EETVMLAM----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQ 718
Query: 713 SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
S QA+G TN +R+DTL+H L+YPQ+PL T + Y L EL
Sbjct: 719 SAM-GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME------Y-----LRFRELP 766
Query: 773 NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK---EMQVKRRSS 829
G N+IVA+ + GYNQEDS++MNR++++RG FRS RSYK + K + +V + +
Sbjct: 767 AGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPT 826
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SG 874
+ G ++ I D LDDDG G + D++IGK +
Sbjct: 827 RETCQ-G-MRHAI--YDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTK 882
Query: 875 ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
D S L+ +E G+V +V+++ N +G F + +R VR P +GDKF+S HGQKG G
Sbjct: 883 RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 942
Query: 935 SQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFA 994
QE+ PFT +GI PDI+INPHA PSR T G G ATPF
Sbjct: 943 RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSAN------KGEIGDATPFN 996
Query: 995 TP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
+V I+ L G+ G E LY+G TG + S IFIGPT+YQRL HM +DK+ R
Sbjct: 997 DAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1056
Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
GP+ L RQP+ R R GG++FGEMERDC IAHGAA L ERLF SD YQ+H+C C
Sbjct: 1057 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1116
Query: 1114 NVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
+A + CR C + I +PY KLL QEL SM I
Sbjct: 1117 IMA-IANTRTHTYE------CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1160
Score = 574 (207.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 182/625 (29%), Positives = 297/625 (47%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP-GYDPSKKGEGEWRYASMRFGQ 90
S+F+E GLV Q++S++EFI+ +Q+ + ++ S + E RY ++F Q
Sbjct: 25 SYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYL-LKFEQ 83
Query: 91 VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
+ L KP+ + +G M P ARL+N+TYS+ + V + T K G EQ
Sbjct: 84 IYLSKPTHWERDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTVIKEGEEQ 132
Query: 151 YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKV 204
L + IG+IP+M++S C + G+ E +C D GGYFII G+EKV
Sbjct: 133 ------LQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKV 186
Query: 205 FVAQEQICLKRLWV----SNSMGWTVAYKS--ENKRNRLIVRLVDMSKF--EDIKG---G 253
+AQE++ ++V + +T +S EN V M + K G
Sbjct: 187 LIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIG 246
Query: 254 EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
+++++ ++ E+PI I+F ALG SD++I+ I + ED ++ ++ S+ +A
Sbjct: 247 QRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAF---- 302
Query: 313 EFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK----QKARFL 361
++ AL ++ +G PG + E E + + P + + +KA FL
Sbjct: 303 VIQEQNVALNFIGS--RGAK--PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFL 358
Query: 362 GYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYG 421
GYMV LL A GRR+ D+RD + NK + + K + Q+ +
Sbjct: 359 GYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR 418
Query: 422 DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
+ +E + I+++GL + +TG W K + +G+ L R TL LRR
Sbjct: 419 GKDFN-LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 477
Query: 482 TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ 540
+ GK+ R H + WG +C TP+G GLVKNL + +S S PI E
Sbjct: 478 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 537
Query: 541 LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIK 599
L ME L + + ++ K+FV+G W+G+ KD ++ ++V +
Sbjct: 538 LEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMI 597
Query: 600 RDELQSEVRIFMDAGRILRPLLVVE 624
RD + E+RI+ DAGRI RPLL+VE
Sbjct: 598 RDIREREIRIYTDAGRICRPLLIVE 622
>UNIPROTKB|P30876 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004672 "protein kinase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 EMBL:CH471057
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
HOGENOM:HOG000222962 EMBL:X63563 EMBL:AK289823 EMBL:BC023503
EMBL:AF055028 IPI:IPI00027808 PIR:S28976 RefSeq:NP_000929.1
UniGene:Hs.602757 ProteinModelPortal:P30876 DIP:DIP-32910N
IntAct:P30876 MINT:MINT-1216897 STRING:P30876 PhosphoSite:P30876
DMDM:401012 PaxDb:P30876 PeptideAtlas:P30876 PRIDE:P30876
Ensembl:ENST00000314595 Ensembl:ENST00000381227 GeneID:5431
KEGG:hsa:5431 UCSC:uc003hcl.1 CTD:5431 GeneCards:GC04P057760
HGNC:HGNC:9188 HPA:HPA037506 MIM:180661 neXtProt:NX_P30876
PharmGKB:PA33508 HOVERGEN:HBG017744 InParanoid:P30876
OrthoDB:EOG4JQ3WQ PhylomeDB:P30876 GenomeRNAi:5431 NextBio:21013
ArrayExpress:P30876 Bgee:P30876 CleanEx:HS_POLR2B
Genevestigator:P30876 GermOnline:ENSG00000047315 Uniprot:P30876
Length = 1174
Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
Identities = 334/951 (35%), Positives = 484/951 (50%)
Query: 253 GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA---- 307
G+++++ ++ E+PI I+F ALG SD++I+ I + ED ++ ++ S+ +A
Sbjct: 253 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ 312
Query: 308 -DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVK 366
N F R A V K K + E ++ M ++ S +KA FLGYMV
Sbjct: 313 EQNVALNFIGSRGAKPGVTKE-KRIKYAK-EVLQKEMLPHVGVSDFCETKKAYFLGYMVH 370
Query: 367 CLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVR 426
LL A GRR+ D+RD + NK + + K + Q+ + +
Sbjct: 371 RLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFN 430
Query: 427 PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
+E + I+++GL + +TG W K + +G+ L R TL LRR +
Sbjct: 431 -LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 489
Query: 487 QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
GK+ R H + WG +C TP+G GLVKNL + +S S PI E L
Sbjct: 490 GRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWS 549
Query: 546 MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIKRDELQ 604
ME L + + ++ K+FV+G W+G+ KD ++ ++V + RD +
Sbjct: 550 MENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIRE 609
Query: 605 SEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEE 655
E+RI+ DAGRI RPLL+VE ++ ++K E NY++Q L+ G++E + T E
Sbjct: 610 REIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLE 669
Query: 656 EEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
EE A D+++K+ +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 670 EETVMLAM----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQ 725
Query: 713 SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
S QA+G TN +R+DTL+H L+YPQ+PL T + Y L EL
Sbjct: 726 SAM-GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME------Y-----LRFRELP 773
Query: 773 NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK---EMQVKRRSS 829
G N+IVA+ + GYNQEDS++MNR++++RG FRS RSYK + K + +V + +
Sbjct: 774 AGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPT 833
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SG 874
+ G ++ I D LDDDG G + D++IGK +
Sbjct: 834 RETCQ-G-MRHAI--YDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTK 889
Query: 875 ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
D S L+ +E G+V +V+++ N +G F + +R VR P +GDKF+S HGQKG G
Sbjct: 890 RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949
Query: 935 SQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFA 994
QE+ PFT +GI PDI+INPHA PSR T G G ATPF
Sbjct: 950 RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSAN------KGEIGDATPFN 1003
Query: 995 TP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
+V I+ L G+ G E LY+G TG + S IFIGPT+YQRL HM +DK+ R
Sbjct: 1004 DAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063
Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
GP+ L RQP+ R R GG++FGEMERDC IAHGAA L ERLF SD YQ+H+C C
Sbjct: 1064 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1123
Query: 1114 NVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
+A + CR C + I +PY KLL QEL SM I
Sbjct: 1124 IMA-IANTRTHTYE------CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167
Score = 574 (207.1 bits), Expect = 4.5e-52, P = 4.5e-52
Identities = 182/625 (29%), Positives = 297/625 (47%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP-GYDPSKKGEGEWRYASMRFGQ 90
S+F+E GLV Q++S++EFI+ +Q+ + ++ S + E RY ++F Q
Sbjct: 32 SYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYL-LKFEQ 90
Query: 91 VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
+ L KP+ + +G M P ARL+N+TYS+ + V + T K G EQ
Sbjct: 91 IYLSKPTHWERDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTVIKEGEEQ 139
Query: 151 YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKV 204
L + IG+IP+M++S C + G+ E +C D GGYFII G+EKV
Sbjct: 140 ------LQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKV 193
Query: 205 FVAQEQICLKRLWV----SNSMGWTVAYKS--ENKRNRLIVRLVDMSKF--EDIKG---G 253
+AQE++ ++V + +T +S EN V M + K G
Sbjct: 194 LIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIG 253
Query: 254 EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
+++++ ++ E+PI I+F ALG SD++I+ I + ED ++ ++ S+ +A
Sbjct: 254 QRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAF---- 309
Query: 313 EFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK----QKARFL 361
++ AL ++ +G PG + E E + + P + + +KA FL
Sbjct: 310 VIQEQNVALNFIGS--RGAK--PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFL 365
Query: 362 GYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYG 421
GYMV LL A GRR+ D+RD + NK + + K + Q+ +
Sbjct: 366 GYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR 425
Query: 422 DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
+ +E + I+++GL + +TG W K + +G+ L R TL LRR
Sbjct: 426 GKDFN-LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 482 TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ 540
+ GK+ R H + WG +C TP+G GLVKNL + +S S PI E
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 541 LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIK 599
L ME L + + ++ K+FV+G W+G+ KD ++ ++V +
Sbjct: 545 LEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMI 604
Query: 600 RDELQSEVRIFMDAGRILRPLLVVE 624
RD + E+RI+ DAGRI RPLL+VE
Sbjct: 605 RDIREREIRIYTDAGRICRPLLIVE 629
>RGD|1309477 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed) polypeptide B"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA;ISO] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA;ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1309477 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 GeneTree:ENSGT00690000102234 CTD:5431
EMBL:CH473981 RefSeq:NP_001099472.1 UniGene:Rn.153952
Ensembl:ENSRNOT00000039252 GeneID:289561 KEGG:rno:289561
NextBio:629984 Uniprot:G3V8Y5
Length = 1174
Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
Identities = 334/951 (35%), Positives = 484/951 (50%)
Query: 253 GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA---- 307
G+++++ ++ E+PI I+F ALG SD++I+ I + ED ++ ++ S+ +A
Sbjct: 253 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ 312
Query: 308 -DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVK 366
N F R A V K K + E ++ M ++ S +KA FLGYMV
Sbjct: 313 EQNVALNFIGSRGAKPGVTKE-KRIKYAK-EVLQKEMLPHVGVSDFCETKKAYFLGYMVH 370
Query: 367 CLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVR 426
LL A GRR+ D+RD + NK + + K + Q+ + +
Sbjct: 371 RLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFN 430
Query: 427 PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
+E + I+++GL + +TG W K + +G+ L R TL LRR +
Sbjct: 431 -LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 489
Query: 487 QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
GK+ R H + WG +C TP+G GLVKNL + +S S PI E L
Sbjct: 490 GRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWS 549
Query: 546 MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIKRDELQ 604
ME L + + ++ K+FV+G W+G+ KD ++ ++V + RD +
Sbjct: 550 MENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIRE 609
Query: 605 SEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEE 655
E+RI+ DAGRI RPLL+VE ++ ++K E NY++Q L+ G++E + T E
Sbjct: 610 REIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLE 669
Query: 656 EEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
EE A D+++K+ +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 670 EETVMLAM----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQ 725
Query: 713 SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
S QA+G TN +R+DTL+H L+YPQ+PL T + Y L EL
Sbjct: 726 SAM-GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME------Y-----LRFRELP 773
Query: 773 NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK---EMQVKRRSS 829
G N+IVA+ + GYNQEDS++MNR++++RG FRS RSYK + K + +V + +
Sbjct: 774 AGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPT 833
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SG 874
+ G ++ I D LDDDG G + D++IGK +
Sbjct: 834 RETCQ-G-MRHAI--YDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTK 889
Query: 875 ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
D S L+ +E G+V +V+++ N +G F + +R VR P +GDKF+S HGQKG G
Sbjct: 890 RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949
Query: 935 SQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFA 994
QE+ PFT +GI PDI+INPHA PSR T G G ATPF
Sbjct: 950 RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSAN------KGEIGDATPFN 1003
Query: 995 TP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
+V I+ L G+ G E LY+G TG + S IFIGPT+YQRL HM +DK+ R
Sbjct: 1004 DAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063
Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
GP+ L RQP+ R R GG++FGEMERDC IAHGAA L ERLF SD YQ+H+C C
Sbjct: 1064 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1123
Query: 1114 NVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
+A + CR C + I +PY KLL QEL SM I
Sbjct: 1124 IMA-IANTRTHTYE------CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167
Score = 574 (207.1 bits), Expect = 4.5e-52, P = 4.5e-52
Identities = 182/625 (29%), Positives = 297/625 (47%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP-GYDPSKKGEGEWRYASMRFGQ 90
S+F+E GLV Q++S++EFI+ +Q+ + ++ S + E RY ++F Q
Sbjct: 32 SYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYL-LKFEQ 90
Query: 91 VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
+ L KP+ + +G M P ARL+N+TYS+ + V + T K G EQ
Sbjct: 91 IYLSKPTHWERDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTVIKEGEEQ 139
Query: 151 YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKV 204
L + IG+IP+M++S C + G+ E +C D GGYFII G+EKV
Sbjct: 140 ------LQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKV 193
Query: 205 FVAQEQICLKRLWV----SNSMGWTVAYKS--ENKRNRLIVRLVDMSKF--EDIKG---G 253
+AQE++ ++V + +T +S EN V M + K G
Sbjct: 194 LIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIG 253
Query: 254 EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
+++++ ++ E+PI I+F ALG SD++I+ I + ED ++ ++ S+ +A
Sbjct: 254 QRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAF---- 309
Query: 313 EFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK----QKARFL 361
++ AL ++ +G PG + E E + + P + + +KA FL
Sbjct: 310 VIQEQNVALNFIGS--RGAK--PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFL 365
Query: 362 GYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYG 421
GYMV LL A GRR+ D+RD + NK + + K + Q+ +
Sbjct: 366 GYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR 425
Query: 422 DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
+ +E + I+++GL + +TG W K + +G+ L R TL LRR
Sbjct: 426 GKDFN-LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 482 TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ 540
+ GK+ R H + WG +C TP+G GLVKNL + +S S PI E
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 541 LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIK 599
L ME L + + ++ K+FV+G W+G+ KD ++ ++V +
Sbjct: 545 LEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMI 604
Query: 600 RDELQSEVRIFMDAGRILRPLLVVE 624
RD + E+RI+ DAGRI RPLL+VE
Sbjct: 605 RDIREREIRIYTDAGRICRPLLIVE 629
>UNIPROTKB|C9J4M6 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HGNC:HGNC:9188 IPI:IPI00873948 STRING:C9J4M6
Ensembl:ENST00000431623 UCSC:uc011caf.1 ArrayExpress:C9J4M6
Bgee:C9J4M6 Uniprot:C9J4M6
Length = 1099
Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
Identities = 334/951 (35%), Positives = 484/951 (50%)
Query: 253 GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA---- 307
G+++++ ++ E+PI I+F ALG SD++I+ I + ED ++ ++ S+ +A
Sbjct: 178 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ 237
Query: 308 -DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVK 366
N F R A V K K + E ++ M ++ S +KA FLGYMV
Sbjct: 238 EQNVALNFIGSRGAKPGVTKE-KRIKYAK-EVLQKEMLPHVGVSDFCETKKAYFLGYMVH 295
Query: 367 CLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVR 426
LL A GRR+ D+RD + NK + + K + Q+ + +
Sbjct: 296 RLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFN 355
Query: 427 PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
+E + I+++GL + +TG W K + +G+ L R TL LRR +
Sbjct: 356 -LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 414
Query: 487 QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
GK+ R H + WG +C TP+G GLVKNL + +S S PI E L
Sbjct: 415 GRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWS 474
Query: 546 MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIKRDELQ 604
ME L + + ++ K+FV+G W+G+ KD ++ ++V + RD +
Sbjct: 475 MENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIRE 534
Query: 605 SEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEE 655
E+RI+ DAGRI RPLL+VE ++ ++K E NY++Q L+ G++E + T E
Sbjct: 535 REIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLE 594
Query: 656 EEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
EE A D+++K+ +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 595 EETVMLAM----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQ 650
Query: 713 SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
S QA+G TN +R+DTL+H L+YPQ+PL T + Y L EL
Sbjct: 651 SAM-GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME------Y-----LRFRELP 698
Query: 773 NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK---EMQVKRRSS 829
G N+IVA+ + GYNQEDS++MNR++++RG FRS RSYK + K + +V + +
Sbjct: 699 AGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPT 758
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SG 874
+ G ++ I D LDDDG G + D++IGK +
Sbjct: 759 RETCQ-G-MRHAI--YDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTK 814
Query: 875 ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
D S L+ +E G+V +V+++ N +G F + +R VR P +GDKF+S HGQKG G
Sbjct: 815 RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 874
Query: 935 SQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFA 994
QE+ PFT +GI PDI+INPHA PSR T G G ATPF
Sbjct: 875 RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSAN------KGEIGDATPFN 928
Query: 995 TP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
+V I+ L G+ G E LY+G TG + S IFIGPT+YQRL HM +DK+ R
Sbjct: 929 DAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 988
Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
GP+ L RQP+ R R GG++FGEMERDC IAHGAA L ERLF SD YQ+H+C C
Sbjct: 989 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1048
Query: 1114 NVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
+A + CR C + I +PY KLL QEL SM I
Sbjct: 1049 IMA-IANTRTHTYE------CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1092
Score = 527 (190.6 bits), Expect = 4.9e-47, P = 4.9e-47
Identities = 168/574 (29%), Positives = 270/574 (47%)
Query: 82 RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTS 141
RY ++F Q+ L KP+ + +G M P ARL+N+TYS+ + V + T
Sbjct: 8 RYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TK 55
Query: 142 DKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGY 195
K G EQ L + IG+IP+M++S C + G+ E +C D GGY
Sbjct: 56 TVIKEGEEQ------LQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGY 109
Query: 196 FIIKGAEKVFVAQEQICLKRLWV----SNSMGWTVAYKS--ENKRNRLIVRLVDMSKF-- 247
FII G+EKV +AQE++ ++V + +T +S EN V M
Sbjct: 110 FIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGG 169
Query: 248 EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFAS 303
+ K G+++++ ++ E+PI I+F ALG SD++I+ I + ED ++ ++ S
Sbjct: 170 QGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPS 229
Query: 304 IHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK- 355
+ +A ++ AL ++ +G PG + E E + + P + +
Sbjct: 230 LDEAF----VIQEQNVALNFIGS--RGAK--PGVTKEKRIKYAKEVLQKEMLPHVGVSDF 281
Query: 356 ---QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMA 412
+KA FLGYMV LL A GRR+ D+RD + NK + + K +
Sbjct: 282 CETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVR 341
Query: 413 KALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
Q+ + + +E + I+++GL + +TG W K + +G+ L R
Sbjct: 342 IYAQKFIDRGKDFN-LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 400
Query: 473 LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST- 531
TL LRR + GK+ R H + WG +C TP+G GLVKNL + +S
Sbjct: 401 ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 460
Query: 532 SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXX 591
S PI E L ME L + + ++ K+FV+G W+G+ KD ++
Sbjct: 461 SQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMD 520
Query: 592 X-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE 624
++V + RD + E+RI+ DAGRI RPLL+VE
Sbjct: 521 IIVSEVSMIRDIREREIRIYTDAGRICRPLLIVE 554
>MGI|MGI:2388280 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC;ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:2388280 PANTHER:PTHR20856 GO:GO:0046872
GO:GO:0003677 GO:GO:0003682 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:BC038472 IPI:IPI00320034
RefSeq:NP_722493.2 UniGene:Mm.273217 ProteinModelPortal:Q8CFI7
DIP:DIP-57023N IntAct:Q8CFI7 STRING:Q8CFI7 PhosphoSite:Q8CFI7
PaxDb:Q8CFI7 PRIDE:Q8CFI7 Ensembl:ENSMUST00000031167 GeneID:231329
KEGG:mmu:231329 UCSC:uc008xwe.2 InParanoid:Q8CFI7 ChiTaRS:POLR2B
NextBio:380519 Bgee:Q8CFI7 CleanEx:MM_POLR2B Genevestigator:Q8CFI7
GermOnline:ENSMUSG00000029250 Uniprot:Q8CFI7
Length = 1174
Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
Identities = 333/951 (35%), Positives = 484/951 (50%)
Query: 253 GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA---- 307
G+++++ ++ E+PI I+F ALG SD++I+ I + ED ++ ++ S+ +A
Sbjct: 253 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ 312
Query: 308 -DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVK 366
N F R A V K K + E ++ M ++ S +KA FLGYMV
Sbjct: 313 EQNVALNFIGSRGAKPGVTKE-KRIKYAK-EVLQKEMLPHVGVSDFCETKKAYFLGYMVH 370
Query: 367 CLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVR 426
LL A GRR+ D+RD + NK + + K + Q+ + +
Sbjct: 371 RLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFN 430
Query: 427 PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
+E + I+++GL + +TG W K + +G+ L R TL LRR +
Sbjct: 431 -LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 489
Query: 487 QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
GK+ R H + WG +C TP+G GLVKNL + +S S PI E L
Sbjct: 490 GRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWS 549
Query: 546 MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIKRDELQ 604
ME L + + ++ K+FV+G W+G+ KD ++ ++V + RD +
Sbjct: 550 MENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIRE 609
Query: 605 SEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEE 655
E+RI+ DAGRI RPLL+VE ++ ++K E NY++Q L+ G++E + T E
Sbjct: 610 REIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLE 669
Query: 656 EEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
EE A D+++K+ +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 670 EETVMLAM----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQ 725
Query: 713 SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
S QA+G TN +R+DTL+H L+YPQ+PL T + Y L EL
Sbjct: 726 SAM-GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME------Y-----LRFRELP 773
Query: 773 NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK---EMQVKRRSS 829
G N+IVA+ + GYNQEDS++MNR++++RG FRS RSYK + K + +V + +
Sbjct: 774 AGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPT 833
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SG 874
+ G ++ I + LDDDG G + D++IGK +
Sbjct: 834 RETCQ-G-MRHAI--YEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTK 889
Query: 875 ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
D S L+ +E G+V +V+++ N +G F + +R VR P +GDKF+S HGQKG G
Sbjct: 890 RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949
Query: 935 SQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFA 994
QE+ PFT +GI PDI+INPHA PSR T G G ATPF
Sbjct: 950 RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSAN------KGEIGDATPFN 1003
Query: 995 TP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
+V I+ L G+ G E LY+G TG + S IFIGPT+YQRL HM +DK+ R
Sbjct: 1004 DAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063
Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
GP+ L RQP+ R R GG++FGEMERDC IAHGAA L ERLF SD YQ+H+C C
Sbjct: 1064 RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1123
Query: 1114 NVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
+A + CR C + I +PY KLL QEL SM I
Sbjct: 1124 IMA-IANTRTHTYE------CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167
Score = 574 (207.1 bits), Expect = 4.5e-52, P = 4.5e-52
Identities = 182/625 (29%), Positives = 297/625 (47%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP-GYDPSKKGEGEWRYASMRFGQ 90
S+F+E GLV Q++S++EFI+ +Q+ + ++ S + E RY ++F Q
Sbjct: 32 SYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYL-LKFEQ 90
Query: 91 VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
+ L KP+ + +G M P ARL+N+TYS+ + V + T K G EQ
Sbjct: 91 IYLSKPTHWERDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTVIKEGEEQ 139
Query: 151 YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKV 204
L + IG+IP+M++S C + G+ E +C D GGYFII G+EKV
Sbjct: 140 ------LQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKV 193
Query: 205 FVAQEQICLKRLWV----SNSMGWTVAYKS--ENKRNRLIVRLVDMSKF--EDIKG---G 253
+AQE++ ++V + +T +S EN V M + K G
Sbjct: 194 LIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIG 253
Query: 254 EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
+++++ ++ E+PI I+F ALG SD++I+ I + ED ++ ++ S+ +A
Sbjct: 254 QRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAF---- 309
Query: 313 EFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK----QKARFL 361
++ AL ++ +G PG + E E + + P + + +KA FL
Sbjct: 310 VIQEQNVALNFIGS--RGAK--PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFL 365
Query: 362 GYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYG 421
GYMV LL A GRR+ D+RD + NK + + K + Q+ +
Sbjct: 366 GYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR 425
Query: 422 DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
+ +E + I+++GL + +TG W K + +G+ L R TL LRR
Sbjct: 426 GKDFN-LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 482 TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ 540
+ GK+ R H + WG +C TP+G GLVKNL + +S S PI E
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 541 LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIK 599
L ME L + + ++ K+FV+G W+G+ KD ++ ++V +
Sbjct: 545 LEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMI 604
Query: 600 RDELQSEVRIFMDAGRILRPLLVVE 624
RD + E+RI+ DAGRI RPLL+VE
Sbjct: 605 RDIREREIRIYTDAGRICRPLLIVE 629
>UNIPROTKB|F1P4F2 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:AADN02009110
EMBL:AADN02009111 IPI:IPI00580164 Ensembl:ENSGALT00000018572
ArrayExpress:F1P4F2 Uniprot:F1P4F2
Length = 1176
Score = 1223 (435.6 bits), Expect = 1.9e-124, P = 1.9e-124
Identities = 334/952 (35%), Positives = 483/952 (50%)
Query: 253 GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA---- 307
G+++++ ++ E+PI I+F ALG SD++I+ I + ED ++ ++ S+ +A
Sbjct: 254 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ 313
Query: 308 -DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGY-MV 365
N F R A V K K + E ++ M ++ S +KA FLGY MV
Sbjct: 314 EQNVALNFIGSRGAKPGVTKE-KRIKYAK-EVLQKEMLPHVGVSDFCETKKAYFLGYYMV 371
Query: 366 KCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTV 425
LL A GRR+ D+RD + NK + + K + Q+ + +
Sbjct: 372 HRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDF 431
Query: 426 RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
+E + I+++GL + +TG W K + +G+ L R TL LRR
Sbjct: 432 N-LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSP 490
Query: 486 VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNS 544
+ GK+ R H + WG +C TP+G GLVKNL + +S S PI E L
Sbjct: 491 IGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEW 550
Query: 545 GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIKRDEL 603
ME L + + ++ K+FV+G W+G+ KD ++ ++V + RD
Sbjct: 551 SMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIR 610
Query: 604 QSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTE 654
+ E+RI+ DAGRI RPLL+VE ++ ++K E NY++Q L+ G++E + T
Sbjct: 611 EREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTL 670
Query: 655 EEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLY 711
EEE A D+++K +THCE+ S +LG+ IIPF +H+ + R Y
Sbjct: 671 EEETVMLAM----TPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 726
Query: 712 QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
QS QA+G TN +R+DTL+H L+YPQ+PL T + Y L EL
Sbjct: 727 QSAM-GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME------Y-----LRFREL 774
Query: 772 YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK---EMQVKRRS 828
G N+IVA+ + GYNQEDS++MNR++++RG FRS RSYK + K + +V +
Sbjct: 775 PAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKP 834
Query: 829 SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------S 873
+ + G ++ I D LDDDG G + D++IGK +
Sbjct: 835 TRETCQ-G-MRHAI--YDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFT 890
Query: 874 GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
D S L+ +E G+V +V+++ N +G F + +R VR P +GDKF+S HGQKG G
Sbjct: 891 KRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQ 950
Query: 934 ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPF 993
QE+ PFT +GI PDI+INPHA PSR T G G ATPF
Sbjct: 951 YRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSAN------KGEIGDATPF 1004
Query: 994 ATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFR 1052
+V I+ L G+ G E LY+G TG + S IFIGPT+YQRL HM +DK+ R
Sbjct: 1005 NDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1064
Query: 1053 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
GP+ L RQP+ R R GG++FGEMERDC IAHGAA L ERLF SD YQ+H+C C
Sbjct: 1065 ARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLC 1124
Query: 1113 KNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
+A + CR C + I +PY KLL QEL SM I
Sbjct: 1125 GIMA-IANTRTHTYE------CRGCRNKTQISLVRMPYACKLLFQELMSMSI 1169
Score = 496 (179.7 bits), Expect = 1.4e-43, P = 1.4e-43
Identities = 165/577 (28%), Positives = 272/577 (47%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
S+F+E GLV Q++S++EFI+ +Q+ + ++ + GE E RY ++F
Sbjct: 33 SYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHAT-GEVEEPPRYL-LKFE 90
Query: 90 QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
Q+ L KP+ + +G M P ARL+N+TYS+ + V + T K G +
Sbjct: 91 QIYLSKPTHWERDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTVIKEGED 139
Query: 150 QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEK 203
Q L + IG+IP+M++S C + G+ E +C D GGYFII G+EK
Sbjct: 140 Q------LQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEK 193
Query: 204 VFVAQEQICLKRLWV----SNSMGWTVAYKS--ENKRNRLIVRLVDMSKF--EDIKG--- 252
V +AQE++ ++V + +T +S EN V M + K
Sbjct: 194 VLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAI 253
Query: 253 GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKC 311
G+++++ ++ E+PI I+F ALG SD++I+ I + ED ++ ++ S+ +A
Sbjct: 254 GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAF--- 310
Query: 312 DEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK----QKARF 360
++ AL ++ +G PG + E E + + P + + +KA F
Sbjct: 311 -VIQEQNVALNFIGS--RGAK--PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYF 365
Query: 361 LGY-MVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDL 419
LGY MV LL A GRR+ D+RD + NK + + K + Q+ +
Sbjct: 366 LGYYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI 425
Query: 420 YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
+ +E + I+++GL + +TG W K + +G+ L R TL L
Sbjct: 426 DRGKDFN-LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHL 484
Query: 480 RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIF 538
RR + GK+ R H + WG +C TP+G GLVKNL + +S S PI
Sbjct: 485 RRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPIL 544
Query: 539 EQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKD 575
E L ME L + + ++ K+FV+G W+G+ KD
Sbjct: 545 EFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKD 581
>ZFIN|ZDB-GENE-030131-2887 [details] [associations]
symbol:polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0031017 "exocrine pancreas development" evidence=IMP]
[GO:0048565 "digestive tract development" evidence=IMP] [GO:0009304
"tRNA transcription" evidence=IMP] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-030131-2887
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:BX465207 IPI:IPI00505191
Ensembl:ENSDART00000091466 ArrayExpress:F1QQA2 Bgee:F1QQA2
Uniprot:F1QQA2
Length = 1129
Score = 1075 (383.5 bits), Expect = 3.5e-122, Sum P(2) = 3.5e-122
Identities = 326/1045 (31%), Positives = 496/1045 (47%)
Query: 166 IGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS 219
IGR+P+M++S C + G + +C D GGYFI+KG EKV + QEQ+ R+ V
Sbjct: 133 IGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVD 192
Query: 220 N----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFAL 275
++G +V + K++R ++ +K G L LS + PI I+F A+
Sbjct: 193 QDRKGTVGASVTSSTHEKKSR--TNMI-------VKQGRFYLKHNTLSEDAPIAIIFKAM 243
Query: 276 GVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPP 335
GV SD+EIV +I E+ ++ S+ + K F + + AL+Y+ ++
Sbjct: 244 GVESDQEIVQMIG--TEE-HVMAAFAPSLEECQ-KAQIFTQTQ-ALRYIGNKVRRQRMWG 298
Query: 336 G---ESTEECMNTYL--FPSLH-GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXX 389
G E+ E +T L P + K +L MV+ ++ A G K D+RD + NK
Sbjct: 299 GQMEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVILA-QGDNKVDDRDYYGNKRL 357
Query: 390 XXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDASILTNGLSRAFSTG 448
+ + K + + R + + ++ +TNG+ A STG
Sbjct: 358 ELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAISTG 417
Query: 449 AWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICF 508
WS + +R G+ L R + + L + R Q + T KV R PS WG +C
Sbjct: 418 NWSLKRFKMDR-QGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCP 476
Query: 509 LSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL----ADDASYSLGGKFKV 563
TP+GE CGLVKNL + ++T + + PI + FN G+E + ++ SY F V
Sbjct: 477 SDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLLCGEELSYPT--VFLV 534
Query: 564 FVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLVV 623
F++G+ +GV +D V V I + V I D GR+ RP ++V
Sbjct: 535 FLNGNILGVIRDHQKLVYTFRLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCRPYIIV 594
Query: 624 ENMGK--IKS--LE--GKNY-TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
+N GK +K+ +E + Y TF+ L ++E + EE DC A + KD
Sbjct: 595 KN-GKPAVKNKHIEELSQGYRTFEDFLHESLVEYLDVNEENDCNIALYEHMISKDT---- 649
Query: 677 PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
TH E++ LLG+ G+IP+ +H+ + R YQ QA+G N R+DTL
Sbjct: 650 ----THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAM-GKQAMGTIGYNQRNRIDTLM 704
Query: 737 HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
+ L YPQRP+ +T + ++ +L GQNA VAV + GY+ ED+LV+N
Sbjct: 705 YLLAYPQRPMVKTKTIE-----------LIDFEKLPAGQNATVAVMSYSGYDIEDALVLN 753
Query: 797 RASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFI 856
+ASL+RG R ++ K + Q + M++ + + I R LD DG
Sbjct: 754 KASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMGPMLD-AETRKPIWRHSILDADGICSP 812
Query: 857 GAN-LQSGDIVIGKY------------ADSGADH----SIKLKHTERGMVQKVVLSSNDD 899
G+ +++ +++ K A G + K ++KV++SSN +
Sbjct: 813 GSEKVENKQVLVNKSMPTVTQTPLEGSAQPGQPQYREVPVSYKGATDSYIEKVMISSNAE 872
Query: 900 GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 959
+ LRQ R P +GDKFSS HGQKGV G + QE+ PF GI PDI++NPH +PS
Sbjct: 873 DAFLVKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPS 932
Query: 960 RQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLY 1019
R T G+ G Y T F V + E L R G++ G + +
Sbjct: 933 RMTVGKLIELLAGKAGVL------DGRFHYGTAFGGSKVKDVCEDLIRYGYNYQGKDYVT 986
Query: 1020 DGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1079
G TGE + + I+ GP +YQ+L HM DK+ R GP LTRQP R R GG++ GEM
Sbjct: 987 SGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM 1046
Query: 1080 ERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDS 1139
ERDCLI +GA+ L ERL SD++++ +C +C + +C C S
Sbjct: 1047 ERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLG-------------YSGWCHYCKS 1093
Query: 1140 GDDIVKANVPYGAKLLCQELFSMGI 1164
+ +PY KLL QEL SM I
Sbjct: 1094 SCHVSSLRIPYACKLLFQELQSMNI 1118
Score = 147 (56.8 bits), Expect = 3.5e-122, Sum P(2) = 3.5e-122
Identities = 58/221 (26%), Positives = 102/221 (46%)
Query: 28 KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYAS 85
K +F GLV I+S+N FI ++K + E I DP W +Y +
Sbjct: 28 KLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKA-NEKITSDA-DPM------WYLKYLN 79
Query: 86 MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
+ G +++ SF + P RL++MTYS+ + V +++ +Q R+ +
Sbjct: 80 IYVGMPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEYTRGSQ-RIIRNALP 132
Query: 146 TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKVF 205
GR ++ + ++ G+ P M+ + +C D GGYFI+KG EKV
Sbjct: 133 IGR-----MPIMLRSSNCVLTGKTP---------MEFSKLNECPLDPGGYFIVKGQEKVI 178
Query: 206 VAQEQICLKRLWVSN----SMGWTVAYKSENKRNR--LIVR 240
+ QEQ+ R+ V ++G +V + K++R +IV+
Sbjct: 179 LIQEQLSKNRIIVDQDRKGTVGASVTSSTHEKKSRTNMIVK 219
>SGD|S000005733 [details] [associations]
symbol:RET1 "Second-largest subunit of RNA polymerase III"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IGI;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005733 PANTHER:PTHR20856 EMBL:BK006948
GO:GO:0046872 GO:GO:0003677 GO:GO:0005666 GO:GO:0003899
Reactome:REACT_83470 EMBL:M38723 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 Reactome:REACT_87991
GO:GO:0042797 HOGENOM:HOG000222962 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH OrthoDB:EOG4K6KC8
EMBL:Z75115 PIR:S67099 RefSeq:NP_014850.1 ProteinModelPortal:P22276
DIP:DIP-997N IntAct:P22276 MINT:MINT-644049 STRING:P22276
PaxDb:P22276 PeptideAtlas:P22276 EnsemblFungi:YOR207C GeneID:854382
KEGG:sce:YOR207C CYGD:YOR207c NextBio:976523 Genevestigator:P22276
GermOnline:YOR207C Uniprot:P22276
Length = 1149
Score = 1091 (389.1 bits), Expect = 9.4e-122, Sum P(2) = 9.4e-122
Identities = 334/1057 (31%), Positives = 508/1057 (48%)
Query: 163 NIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRL 216
++ IGR+P+M++S+ C + K + +C D GGYFI+ G EKV + QEQ+ R+
Sbjct: 146 DVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRI 205
Query: 217 WVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFA 274
V G A + + R + K G+ L ++ EIPI I+ A
Sbjct: 206 IVEADEKKGIVQASVTSSTHER------KSKTYVITKNGKIYLKHNSIAEEIPIAIVLKA 259
Query: 275 LGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKG---- 330
G+ SD EI+ L+ C + S +FA + +K D + + + AL+Y+ +K
Sbjct: 260 CGILSDLEIMQLV---CGNDSSYQDIFAVNLEESSKLDIYTQ-QQALEYIGAKVKTMRRQ 315
Query: 331 --TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
T G E+ + +L ++KA ++ M + ++ A + D+RD NK
Sbjct: 316 KLTILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNK 375
Query: 388 XXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASI------LTNGL 441
+ ++ + L + R +EY SI +T+GL
Sbjct: 376 RLELAGQLISLLFEDLFKKFNNDFKLSIDKVL--KKPNRAMEYDALLSINVHSNNITSGL 433
Query: 442 SRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPS 501
+RA STG WS + ER +G+ L R + + L + R Q + + KV R PS
Sbjct: 434 NRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPS 492
Query: 502 HWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGK 560
+G +C TP+GE CGLVKNL + T + + EPI + + G+E + S SL
Sbjct: 493 QFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDSASLHLN 552
Query: 561 FKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPL 620
+ V+++G IG + FV+ + I + Q V I D GRI RPL
Sbjct: 553 YGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGGRICRPL 612
Query: 621 LVV-ENMGKIKS------LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIE 673
++V + ++K L+G+ F L G++E + EE D Y+ +
Sbjct: 613 IIVSDGQSRVKDIHLRKLLDGE-LDFDDFLKLGLVEYLDVNEEND-------SYIALYEK 664
Query: 674 DKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
D P TH E++ +LG G+IP+ +H+ + R YQ QAIG N R+D
Sbjct: 665 DIVP-SMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAM-GKQAIGAIAYNQFKRID 722
Query: 734 TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
TL + + YPQ+P+ +T + + Y LP GQNA VAV + GY+ ED+L
Sbjct: 723 TLLYLMTYPQQPMVKTKTIELID---YDK---LPA-----GQNATVAVMSYSGYDIEDAL 771
Query: 794 VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSK---IGRVDSLDD 850
V+N++S++RG R E R K K + D++ ++ I + SL
Sbjct: 772 VLNKSSIDRGFGRCETRR--KTTTVLKRYA---NHTQDIIGGMRVDENGDPIWQHQSLGP 826
Query: 851 DGFPFIGANLQSGDIVIGKYADSG-ADH------SIKLKHTE-----RGM----VQKVVL 894
DG +G +QSG I I K + AD +++ ++ E RG + +V++
Sbjct: 827 DGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMM 886
Query: 895 SSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINP 954
S +D+ + V LRQ R P LGDKFSS HGQKGV G + QE+ PF QGIVPDI++NP
Sbjct: 887 SVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNP 946
Query: 955 HAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLHRAGFSKWG 1014
H FPSR T G+ +G Y T F ++ +++ L GF+ G
Sbjct: 947 HGFPSRMTVGKMIELISGKAGVL------NGTLEYGTCFGGSKLEDMSKILVDQGFNYSG 1000
Query: 1015 TERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGI 1074
+ LY G TGE +++ IF GP +YQ+L HM DK+ R GP LTRQP R R GG+
Sbjct: 1001 KDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGL 1060
Query: 1075 KFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYC 1134
+ GEMERDC+IA+GA+ L ERL SD++++ +C KC + +C
Sbjct: 1061 RLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMG-------------YSGWC 1107
Query: 1135 RICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
C S ++I+K +PY AKLL QEL SM I + E
Sbjct: 1108 TTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLE 1144
Score = 127 (49.8 bits), Expect = 9.4e-122, Sum P(2) = 9.4e-122
Identities = 49/187 (26%), Positives = 84/187 (44%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
+F GLV ++S+N F+ L+K + ++ DP E +Y +R G+
Sbjct: 50 AFLKVKGLVKQHLDSFNYFVDTDLKKIIKA--NQLILSDVDP----EFYLKYVDIRVGK- 102
Query: 92 TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
K S + ++ P RL++MTYS+ + V ++ YT+ GR
Sbjct: 103 ---KSS----SSTKDYLTPPHECRLRDMTYSAPIYVDIE---YTR----------GRNII 142
Query: 152 IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKVFVAQEQI 211
+ K+V ++ ++ +D M + +C D GGYFI+ G EKV + QEQ+
Sbjct: 143 MHKDVEIGRMPIMLRSNKCILYDADESKM--AKLNECPLDPGGYFIVNGTEKVILVQEQL 200
Query: 212 CLKRLWV 218
R+ V
Sbjct: 201 SKNRIIV 207
>UNIPROTKB|E1BRJ4 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045089
"positive regulation of innate immune response" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AADN02006293 EMBL:AADN02006294
EMBL:AADN02006295 IPI:IPI00580707 RefSeq:XP_416307.3
UniGene:Gga.54760 Ensembl:ENSGALT00000020649 GeneID:418071
KEGG:gga:418071 Uniprot:E1BRJ4
Length = 1132
Score = 1072 (382.4 bits), Expect = 3.2e-121, Sum P(2) = 3.2e-121
Identities = 322/1047 (30%), Positives = 489/1047 (46%)
Query: 166 IGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS 219
IGR+P+M++S C + G + +C D GGYFI+KG EKV + QEQ+ R+ V
Sbjct: 133 IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVE 192
Query: 220 ----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFAL 275
++G +V + K++R +V +K G L LS +IPI I+F A+
Sbjct: 193 ADRKGTVGASVTSSTHEKKSR--TNMV-------VKQGRFYLRHNTLSEDIPIAIIFKAM 243
Query: 276 GVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF-- 333
GV SD+EIV +I E+ ++ S+ + K F + ALKY+ ++
Sbjct: 244 GVESDQEIVQMIG--TEE-HVMAAFAPSLEECQ-KAQIFTQ-MQALKYIGNKVRRQRMWG 298
Query: 334 -PPGESTEECMN-------TYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFR 385
P EE T++ + K + MV+ ++ A G K D+RD +
Sbjct: 299 GPKKTKMEEARELLASTILTHVLVKEFNFRAKCIYTAVMVRRVILA-QGENKVDDRDYYG 357
Query: 386 NKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDASILTNGLSRA 444
NK + + K + + R + + ++ +TNG+ A
Sbjct: 358 NKRLELAGQLLSLLFEDLFKKFNSELKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNA 417
Query: 445 FSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWG 504
STG WS + +R G+ L R + + L + R Q + T KV R PS WG
Sbjct: 418 ISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWG 476
Query: 505 KICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL----ADDASYSLGG 559
+C TP+GE CGLVKNL + ++T + + PI + N G+E + ++ SY
Sbjct: 477 MLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLASNLGVEDVNLLCGEELSYP--N 534
Query: 560 KFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRP 619
F VF++G+ +GV +D V+ V I + V I D GR+ RP
Sbjct: 535 VFLVFLNGNILGVIRDHQKLVNTFRIMRRAGYINEFVSISTNLSDRCVYISSDGGRLCRP 594
Query: 620 LLVVENMGKI---KSLE--GKNY-TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIE 673
++V+ K +E + Y F+ L G++E + EE DC A + KD
Sbjct: 595 YIIVKKQKPAVTNKHMEELAQGYRNFEDFLHEGLVEYLDVNEENDCNIALYEHTINKDT- 653
Query: 674 DKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
TH E++ LLG+ G+IP+ +H+ + R YQ QA+G N R+D
Sbjct: 654 -------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAM-GKQAMGTIGYNQRNRID 705
Query: 734 TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
TL + L YPQ+P+ +T + ++ +L GQNA VAV + GY+ ED+L
Sbjct: 706 TLMYLLAYPQKPMVKTKTIE-----------LIDFEKLPAGQNATVAVMSYSGYDIEDAL 754
Query: 794 VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGF 853
V+N+ASL+RG R ++ K + Q + M++ + I R + LD DG
Sbjct: 755 VLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD-AATRKPIWRHEILDADGI 813
Query: 854 PFIGANLQSGDIVIGKYADS-------GA---------DHSIKLKHTERGMVQKVVLSSN 897
G +++ +++ K + G+ D + K ++KV++SSN
Sbjct: 814 CSPGEKVENKQVLVNKSMPTVTQTPLEGSSVPQQPQYKDVPVTYKGATDSYIEKVMISSN 873
Query: 898 DDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAF 957
+ + LRQ R P +GDKFSS HGQKGV G + QE+ PF GI PDI++NPH F
Sbjct: 874 AEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGF 933
Query: 958 PSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLHRAGFSKWGTER 1017
PSR T G+ G Y T F V + E L R G++ G +
Sbjct: 934 PSRMTVGKLIELLAGKAGVL------DGRFHYGTAFGGSKVKDVCEDLIRHGYNYLGKDY 987
Query: 1018 LYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFG 1077
+ G TGE + + I+ GP +YQ+L HM DK+ R GP LTRQP R R GG++ G
Sbjct: 988 VTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLG 1047
Query: 1078 EMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRIC 1137
EMERDCLI +GA+ L ERL SD++++ +C +C + +C C
Sbjct: 1048 EMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLG-------------YSGWCHYC 1094
Query: 1138 DSGDDIVKANVPYGAKLLCQELFSMGI 1164
S + +PY KLL QEL SM I
Sbjct: 1095 KSSCHVSSLRIPYACKLLFQELQSMNI 1121
Score = 141 (54.7 bits), Expect = 3.2e-121, Sum P(2) = 3.2e-121
Identities = 53/211 (25%), Positives = 96/211 (45%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
+F GLV I+S+N FI ++K + E + DP W +Y ++ G
Sbjct: 32 AFLKVKGLVKQHIDSFNYFINVEIKKIMKA-NEKVTSDA-DPM------WYLKYLNIYVG 83
Query: 90 QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
+++ SF + P RL++MTYS+ + V +++ +Q R+ + GR
Sbjct: 84 TPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEYTRGSQ-RIIRNALPIGR- 135
Query: 150 QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKVFVAQE 209
++ + ++ G+ P + + +C D GGYFI+KG EKV + QE
Sbjct: 136 ----MPIMLRSSNCVLTGKTPA---------EFAKLNECPLDPGGYFIVKGVEKVILIQE 182
Query: 210 QICLKRLWVS----NSMGWTVAYKSENKRNR 236
Q+ R+ V ++G +V + K++R
Sbjct: 183 QLSKNRIIVEADRKGTVGASVTSSTHEKKSR 213
>MGI|MGI:1917678 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISO] [GO:0045087
"innate immune response" evidence=IEA] [GO:0045089 "positive
regulation of innate immune response" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:1917678 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND EMBL:BC044796 EMBL:BC068143 EMBL:AK039366
IPI:IPI00410871 RefSeq:NP_081699.1 UniGene:Mm.335007
ProteinModelPortal:P59470 STRING:P59470 PhosphoSite:P59470
PaxDb:P59470 PRIDE:P59470 Ensembl:ENSMUST00000077175 GeneID:70428
KEGG:mmu:70428 UCSC:uc007gku.1 InParanoid:P59470 NextBio:331603
Bgee:P59470 CleanEx:MM_POLR3B Genevestigator:P59470
GermOnline:ENSMUSG00000034453 Uniprot:P59470
Length = 1133
Score = 1069 (381.4 bits), Expect = 8.4e-121, Sum P(2) = 8.4e-121
Identities = 326/1049 (31%), Positives = 487/1049 (46%)
Query: 166 IGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS 219
IGR+P+M++S C + G + +C D GGYFI+KG EKV + QEQ+ R+ V
Sbjct: 133 IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVE 192
Query: 220 ----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFAL 275
++G +V + K++R +M+ +K G L LS +IPI I+F A+
Sbjct: 193 ADRKGAVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRHNTLSEDIPIVIIFKAM 243
Query: 276 GVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF-- 333
GV SD+EIV +I E+ ++ S+ + K F + ALKY+ ++
Sbjct: 244 GVESDQEIVQMIG--TEE-HVMAAFGPSLEECQ-KAQIFTQ-MQALKYIGNKVRRQRMWG 298
Query: 334 --PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR--------KCDNRDD 383
P EE L S T + + KC+ A RR K D+RD
Sbjct: 299 GGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDY 356
Query: 384 FRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDASILTNGLS 442
+ NK + M K + + R + + ++ +TNG+
Sbjct: 357 YGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMV 416
Query: 443 RAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSH 502
A STG WS + +R G+ L R + + L + R Q + T KV R PS
Sbjct: 417 NAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQ 475
Query: 503 WGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL----ADDASYSL 557
WG +C TP+GE CGLVKNL + ++T + + PI + N G+E + ++ SY
Sbjct: 476 WGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYP- 534
Query: 558 GGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRIL 617
F VF++G+ +GV +D VS V I + V I D GR+
Sbjct: 535 -NVFLVFLNGNILGVIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLC 593
Query: 618 RPLLVVENMGKI---KSLE--GKNY-TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKD 671
RP ++V+ K +E + Y F+ L ++E + EE DC A + KD
Sbjct: 594 RPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD 653
Query: 672 IEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIR 731
TH E++ LLG+ G+IP+ +H+ + R YQ QA+G N R
Sbjct: 654 T--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAM-GKQAMGTIGYNQRNR 704
Query: 732 VDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQED 791
+DTL + L YPQ+P+ +T + ++ +L GQNA VAV + GY+ ED
Sbjct: 705 IDTLMYLLAYPQKPMVKTKTIE-----------LIDFEKLPAGQNATVAVMSYSGYDIED 753
Query: 792 SLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDD 851
+LV+N+ASL+RG R ++ K + Q + M++ + I R + LD D
Sbjct: 754 ALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD-AATRKPIWRHEILDAD 812
Query: 852 GFPFIGANLQSGDIVIGKYADS-------GA---------DHSIKLKHTERGMVQKVVLS 895
G G +++ +++ K + G+ D I K ++KV++S
Sbjct: 813 GICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMIS 872
Query: 896 SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
SN + + LRQ R P +GDKFSS HGQKGV G + QE+ PF GI PDI++NPH
Sbjct: 873 SNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPH 932
Query: 956 AFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLHRAGFSKWGT 1015
FPSR T G+ G Y T F V + E L R G++ G
Sbjct: 933 GFPSRMTVGKLIELLAGKAGVL------DGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGK 986
Query: 1016 ERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIK 1075
+ + G TGE + + I+ GP +YQ+L HM DK+ R GP LTRQP R R GG++
Sbjct: 987 DYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLR 1046
Query: 1076 FGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCR 1135
GEMERDCLI +GA+ L ERL SD++++ +C +C + +C
Sbjct: 1047 LGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLG-------------YSGWCH 1093
Query: 1136 ICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
C S + +PY KLL QEL SM I
Sbjct: 1094 YCKSSCHVSSLRIPYACKLLFQELQSMNI 1122
Score = 140 (54.3 bits), Expect = 8.4e-121, Sum P(2) = 8.4e-121
Identities = 53/211 (25%), Positives = 96/211 (45%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
+F GLV I+S+N FI ++K + E + DP W +Y ++ G
Sbjct: 32 AFLKVKGLVKQHIDSFNYFINVEIKKIMKA-NEKVTSDA-DPM------WYLKYLNIYVG 83
Query: 90 QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
+++ SF + P RL++MTYS+ + V +++ +Q R+ + GR
Sbjct: 84 LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEYTRGSQ-RIIRNALPIGR- 135
Query: 150 QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKVFVAQE 209
++ + ++ G+ P + + +C D GGYFI+KG EKV + QE
Sbjct: 136 ----MPIMLRSSNCVLTGKTPA---------EFAKLNECPLDPGGYFIVKGVEKVILIQE 182
Query: 210 QICLKRLWVS----NSMGWTVAYKSENKRNR 236
Q+ R+ V ++G +V + K++R
Sbjct: 183 QLSKNRIIVEADRKGAVGASVTSSTHEKKSR 213
>RGD|1565311 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed) polypeptide
B" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA;ISO]
[GO:0045089 "positive regulation of innate immune response"
evidence=IEA;ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1565311 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND IPI:IPI00365981 RefSeq:NP_001178807.1
UniGene:Rn.37546 Ensembl:ENSRNOT00000009746 GeneID:362858
KEGG:rno:362858 UCSC:RGD:1565311 NextBio:681550 Uniprot:D3ZV30
Length = 1133
Score = 1069 (381.4 bits), Expect = 8.4e-121, Sum P(2) = 8.4e-121
Identities = 326/1049 (31%), Positives = 487/1049 (46%)
Query: 166 IGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS 219
IGR+P+M++S C + G + +C D GGYFI+KG EKV + QEQ+ R+ V
Sbjct: 133 IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVE 192
Query: 220 ----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFAL 275
++G +V + K++R +M+ +K G L LS +IPI I+F A+
Sbjct: 193 ADRKGAVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRHNTLSEDIPIVIIFKAM 243
Query: 276 GVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF-- 333
GV SD+EIV +I E+ ++ S+ + K F + ALKY+ ++
Sbjct: 244 GVESDQEIVQMIG--TEE-HVMAAFGPSLEECQ-KAQIFTQ-MQALKYIGNKVRRQRMWG 298
Query: 334 --PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR--------KCDNRDD 383
P EE L S T + + KC+ A RR K D+RD
Sbjct: 299 GGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDY 356
Query: 384 FRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDASILTNGLS 442
+ NK + M K + + R + + ++ +TNG+
Sbjct: 357 YGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMV 416
Query: 443 RAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSH 502
A STG WS + +R G+ L R + + L + R Q + T KV R PS
Sbjct: 417 NAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQ 475
Query: 503 WGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL----ADDASYSL 557
WG +C TP+GE CGLVKNL + ++T + + PI + N G+E + ++ SY
Sbjct: 476 WGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYP- 534
Query: 558 GGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRIL 617
F VF++G+ +GV +D VS V I + V I D GR+
Sbjct: 535 -NVFLVFLNGNILGVIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLC 593
Query: 618 RPLLVVENMGKI---KSLE--GKNY-TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKD 671
RP ++V+ K +E + Y F+ L ++E + EE DC A + KD
Sbjct: 594 RPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD 653
Query: 672 IEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIR 731
TH E++ LLG+ G+IP+ +H+ + R YQ QA+G N R
Sbjct: 654 T--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAM-GKQAMGTIGYNQRNR 704
Query: 732 VDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQED 791
+DTL + L YPQ+P+ +T + ++ +L GQNA VAV + GY+ ED
Sbjct: 705 IDTLMYLLAYPQKPMVKTKTIE-----------LIDFEKLPAGQNATVAVMSYSGYDIED 753
Query: 792 SLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDD 851
+LV+N+ASL+RG R ++ K + Q + M++ + I R + LD D
Sbjct: 754 ALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD-AATRKPIWRHEILDAD 812
Query: 852 GFPFIGANLQSGDIVIGKYADS-------GA---------DHSIKLKHTERGMVQKVVLS 895
G G +++ +++ K + G+ D I K ++KV++S
Sbjct: 813 GICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMIS 872
Query: 896 SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
SN + + LRQ R P +GDKFSS HGQKGV G + QE+ PF GI PDI++NPH
Sbjct: 873 SNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPH 932
Query: 956 AFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLHRAGFSKWGT 1015
FPSR T G+ G Y T F V + E L R G++ G
Sbjct: 933 GFPSRMTVGKLIELLAGKAGVL------DGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGK 986
Query: 1016 ERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIK 1075
+ + G TGE + + I+ GP +YQ+L HM DK+ R GP LTRQP R R GG++
Sbjct: 987 DYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLR 1046
Query: 1076 FGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCR 1135
GEMERDCLI +GA+ L ERL SD++++ +C +C + +C
Sbjct: 1047 LGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLG-------------YSGWCH 1093
Query: 1136 ICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
C S + +PY KLL QEL SM I
Sbjct: 1094 YCKSSCHVSSLRIPYACKLLFQELQSMNI 1122
Score = 140 (54.3 bits), Expect = 8.4e-121, Sum P(2) = 8.4e-121
Identities = 53/211 (25%), Positives = 96/211 (45%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
+F GLV I+S+N FI ++K + E + DP W +Y ++ G
Sbjct: 32 AFLKVKGLVKQHIDSFNYFINVEIKKIMKA-NEKVTSDA-DPM------WYLKYLNIYVG 83
Query: 90 QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
+++ SF + P RL++MTYS+ + V +++ +Q R+ + GR
Sbjct: 84 LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEYTRGSQ-RIIRNALPIGR- 135
Query: 150 QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKVFVAQE 209
++ + ++ G+ P + + +C D GGYFI+KG EKV + QE
Sbjct: 136 ----MPIMLRSSNCVLTGKTPA---------EFAKLNECPLDPGGYFIVKGVEKVILIQE 182
Query: 210 QICLKRLWVS----NSMGWTVAYKSENKRNR 236
Q+ R+ V ++G +V + K++R
Sbjct: 183 QLSKNRIIVEADRKGAVGASVTSSTHEKKSR 213
>UNIPROTKB|E1BPX6 [details] [associations]
symbol:POLR3B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045089 "positive regulation of innate immune response"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:DAAA02013740 EMBL:DAAA02013741
EMBL:DAAA02013742 IPI:IPI00924128 RefSeq:NP_001179718.1
UniGene:Bt.42818 Ensembl:ENSBTAT00000038043 GeneID:540839
KEGG:bta:540839 NextBio:20878865 ArrayExpress:E1BPX6 Uniprot:E1BPX6
Length = 1133
Score = 1067 (380.7 bits), Expect = 1.4e-120, Sum P(2) = 1.4e-120
Identities = 325/1049 (30%), Positives = 487/1049 (46%)
Query: 166 IGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS 219
IGR+P+M++S C + G + +C D GGYFI+KG EKV + QEQ+ R+ V
Sbjct: 133 IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVE 192
Query: 220 ----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFAL 275
++G +V + K++R +M+ +K G L LS +IPI I+F A+
Sbjct: 193 ADRKGTVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRHNTLSEDIPIVIIFKAM 243
Query: 276 GVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF-- 333
GV SD+EIV +I E+ ++ S+ + K F + ALKY+ ++
Sbjct: 244 GVESDQEIVQMIG--TEE-HVMAAFGPSLEECQ-KAQIFTQ-MQALKYIGNKVRRQRMWG 298
Query: 334 --PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR--------KCDNRDD 383
P EE L S T + + KC+ A RR K D+RD
Sbjct: 299 GGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDY 356
Query: 384 FRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDASILTNGLS 442
+ NK + M K + + R + + ++ +TNG+
Sbjct: 357 YGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMV 416
Query: 443 RAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSH 502
A STG WS + +R G+ L R + + L + R Q + T KV R PS
Sbjct: 417 NAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQ 475
Query: 503 WGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL----ADDASYSL 557
WG +C TP+GE CGLVKNL + ++T + + PI + N G+E + ++ SY
Sbjct: 476 WGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP- 534
Query: 558 GGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRIL 617
F VF++G+ +GV +D V+ V I + V I D GR+
Sbjct: 535 -NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLC 593
Query: 618 RPLLVVENMGKI---KSLE--GKNY-TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKD 671
RP ++V+ K +E + Y F+ L ++E + EE DC A + KD
Sbjct: 594 RPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD 653
Query: 672 IEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIR 731
TH E++ LLG+ G+IP+ +H+ + R YQ QA+G N R
Sbjct: 654 T--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAM-GKQAMGTIGYNQRNR 704
Query: 732 VDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQED 791
+DTL + L YPQ+P+ +T + ++ +L GQNA VAV + GY+ ED
Sbjct: 705 IDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQNATVAVMSYSGYDIED 753
Query: 792 SLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDD 851
+LV+N+ASL+RG R ++ K + Q + M++ + I R + LD D
Sbjct: 754 ALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD-AATRKPIWRHEILDAD 812
Query: 852 GFPFIGANLQSGDIVIGKYADS-------GA---------DHSIKLKHTERGMVQKVVLS 895
G G +++ +++ K + G+ D I K ++KV++S
Sbjct: 813 GICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMIS 872
Query: 896 SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
SN + + LRQ R P +GDKFSS HGQKGV G + QE+ PF GI PDI++NPH
Sbjct: 873 SNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPH 932
Query: 956 AFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLHRAGFSKWGT 1015
FPSR T G+ G Y T F V + E L R G++ G
Sbjct: 933 GFPSRMTVGKLIELLAGKAGVL------DGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGK 986
Query: 1016 ERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIK 1075
+ + G TGE + + I+ GP +YQ+L HM DK+ R GP LTRQP R R GG++
Sbjct: 987 DYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLR 1046
Query: 1076 FGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCR 1135
GEMERDCLI +GA+ L ERL SD++++ +C +C + +C
Sbjct: 1047 LGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLG-------------YSGWCH 1093
Query: 1136 ICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
C S + +PY KLL QEL SM I
Sbjct: 1094 FCKSSCHVSSLRIPYACKLLFQELQSMNI 1122
Score = 140 (54.3 bits), Expect = 1.4e-120, Sum P(2) = 1.4e-120
Identities = 53/211 (25%), Positives = 96/211 (45%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
+F GLV I+S+N FI ++K + E + DP W +Y ++ G
Sbjct: 32 AFLKVKGLVKQHIDSFNYFINVEIKKIMKA-NEKVTSDA-DPM------WYLKYLNIYVG 83
Query: 90 QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
+++ SF + P RL++MTYS+ + V +++ +Q R+ + GR
Sbjct: 84 LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEYTRGSQ-RIIRNALPIGR- 135
Query: 150 QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKVFVAQE 209
++ + ++ G+ P + + +C D GGYFI+KG EKV + QE
Sbjct: 136 ----MPIMLRSSNCVLTGKTPA---------EFAKLNECPLDPGGYFIVKGVEKVILIQE 182
Query: 210 QICLKRLWVS----NSMGWTVAYKSENKRNR 236
Q+ R+ V ++G +V + K++R
Sbjct: 183 QLSKNRIIVEADRKGTVGASVTSSTHEKKSR 213
>UNIPROTKB|Q9NW08 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0045089 "positive regulation of innate
immune response" evidence=IMP] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0045087 EMBL:CH471054 GO:GO:0006351 GO:GO:0051607
GO:GO:0045089 Reactome:REACT_1788 GO:GO:0003899 GO:GO:0032728
GO:GO:0006386 GO:GO:0006385 EMBL:AC009721 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 Orphanet:88637 KO:K03021
OMA:DMIMNPH EMBL:AY092084 EMBL:AK001161 EMBL:AK001250 EMBL:AK122713
EMBL:AK291635 EMBL:AC078992 EMBL:AC080012 EMBL:BC046238
IPI:IPI00301346 IPI:IPI00930490 RefSeq:NP_001154180.1
RefSeq:NP_060552.4 UniGene:Hs.610795 UniGene:Hs.62696
ProteinModelPortal:Q9NW08 IntAct:Q9NW08 STRING:Q9NW08
PhosphoSite:Q9NW08 DMDM:29428029 PaxDb:Q9NW08 PRIDE:Q9NW08
Ensembl:ENST00000228347 Ensembl:ENST00000539066 GeneID:55703
KEGG:hsa:55703 UCSC:uc001tlp.3 CTD:55703 GeneCards:GC12P106751
H-InvDB:HIX0037055 HGNC:HGNC:30348 HPA:HPA036466 MIM:614366
MIM:614381 neXtProt:NX_Q9NW08 PharmGKB:PA134867680
InParanoid:Q9NW08 OrthoDB:EOG49ZXND PhylomeDB:Q9NW08
GenomeRNAi:55703 NextBio:60549 ArrayExpress:Q9NW08 Bgee:Q9NW08
CleanEx:HS_POLR3B Genevestigator:Q9NW08 GermOnline:ENSG00000013503
Uniprot:Q9NW08
Length = 1133
Score = 1066 (380.3 bits), Expect = 1.7e-120, Sum P(2) = 1.7e-120
Identities = 325/1049 (30%), Positives = 487/1049 (46%)
Query: 166 IGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS 219
IGR+P+M++S C + G + +C D GGYFI+KG EKV + QEQ+ R+ V
Sbjct: 133 IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVE 192
Query: 220 ----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFAL 275
++G +V + K++R +M+ +K G L LS +IPI I+F A+
Sbjct: 193 ADRKGAVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRHNTLSEDIPIVIIFKAM 243
Query: 276 GVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF-- 333
GV SD+EIV +I E+ ++ S+ + K F + ALKY+ ++
Sbjct: 244 GVESDQEIVQMIG--TEE-HVMAAFGPSLEECQ-KAQIFTQ-MQALKYIGNKVRRQRMWG 298
Query: 334 --PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR--------KCDNRDD 383
P EE L S T + + KC+ A RR K D+RD
Sbjct: 299 GGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDY 356
Query: 384 FRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDASILTNGLS 442
+ NK + M K + + R + + ++ +TNG+
Sbjct: 357 YGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMV 416
Query: 443 RAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSH 502
A STG WS + +R G+ L R + + L + R Q + T KV R PS
Sbjct: 417 NAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQ 475
Query: 503 WGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL----ADDASYSL 557
WG +C TP+GE CGLVKNL + ++T + + PI + N G+E + ++ SY
Sbjct: 476 WGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP- 534
Query: 558 GGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRIL 617
F VF++G+ +GV +D V+ V I + V I D GR+
Sbjct: 535 -NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLC 593
Query: 618 RPLLVVENMGKI---KSLE--GKNY-TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKD 671
RP ++V+ K +E + Y F+ L ++E + EE DC A + KD
Sbjct: 594 RPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD 653
Query: 672 IEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIR 731
TH E++ LLG+ G+IP+ +H+ + R YQ QA+G N R
Sbjct: 654 T--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAM-GKQAMGTIGYNQRNR 704
Query: 732 VDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQED 791
+DTL + L YPQ+P+ +T + ++ +L GQNA VAV + GY+ ED
Sbjct: 705 IDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQNATVAVMSYSGYDIED 753
Query: 792 SLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDD 851
+LV+N+ASL+RG R ++ K + Q + M++ + I R + LD D
Sbjct: 754 ALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD-AATRKPIWRHEILDAD 812
Query: 852 GFPFIGANLQSGDIVIGKYADS-------GA---------DHSIKLKHTERGMVQKVVLS 895
G G +++ +++ K + G+ D I K ++KV++S
Sbjct: 813 GICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMIS 872
Query: 896 SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
SN + + LRQ R P +GDKFSS HGQKGV G + QE+ PF GI PDI++NPH
Sbjct: 873 SNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPH 932
Query: 956 AFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLHRAGFSKWGT 1015
FPSR T G+ G Y T F V + E L R G++ G
Sbjct: 933 GFPSRMTVGKLIELLAGKAGVL------DGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGK 986
Query: 1016 ERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIK 1075
+ + G TGE + + I+ GP +YQ+L HM DK+ R GP LTRQP R R GG++
Sbjct: 987 DYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLR 1046
Query: 1076 FGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCR 1135
GEMERDCLI +GA+ L ERL SD++++ +C +C + +C
Sbjct: 1047 LGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLG-------------YSGWCH 1093
Query: 1136 ICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
C S + +PY KLL QEL SM I
Sbjct: 1094 YCKSSCHVSSLRIPYACKLLFQELQSMNI 1122
Score = 140 (54.3 bits), Expect = 1.7e-120, Sum P(2) = 1.7e-120
Identities = 53/211 (25%), Positives = 96/211 (45%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
+F GLV I+S+N FI ++K + E + DP W +Y ++ G
Sbjct: 32 AFLKVKGLVKQHIDSFNYFINVEIKKIMKA-NEKVTSDA-DPM------WYLKYLNIYVG 83
Query: 90 QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
+++ SF + P RL++MTYS+ + V +++ +Q R+ + GR
Sbjct: 84 LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEYTRGSQ-RIIRNALPIGR- 135
Query: 150 QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKVFVAQE 209
++ + ++ G+ P + + +C D GGYFI+KG EKV + QE
Sbjct: 136 ----MPIMLRSSNCVLTGKTPA---------EFAKLNECPLDPGGYFIVKGVEKVILIQE 182
Query: 210 QICLKRLWVS----NSMGWTVAYKSENKRNR 236
Q+ R+ V ++G +V + K++R
Sbjct: 183 QLSKNRIIVEADRKGAVGASVTSSTHEKKSR 213
>UNIPROTKB|E2RHZ2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0045089 "positive regulation of innate
immune response" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AAEX03007377 RefSeq:XP_531760.2
Ensembl:ENSCAFT00000002941 GeneID:474531 KEGG:cfa:474531
NextBio:20850526 Uniprot:E2RHZ2
Length = 1133
Score = 1065 (380.0 bits), Expect = 2.2e-120, Sum P(2) = 2.2e-120
Identities = 325/1049 (30%), Positives = 487/1049 (46%)
Query: 166 IGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS 219
IGR+P+M++S C + G + +C D GGYFI+KG EKV + QEQ+ R+ V
Sbjct: 133 IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVE 192
Query: 220 ----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFAL 275
++G +V + K++R +M+ +K G L LS +IPI I+F A+
Sbjct: 193 ADRKGTVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRHNTLSEDIPIVIIFKAM 243
Query: 276 GVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF-- 333
GV SD+EIV +I E+ ++ S+ + K F + ALKY+ ++
Sbjct: 244 GVESDQEIVQMIG--TEE-HVMAAFGPSLEECQ-KAQIFTQ-MQALKYIGNKVRRQRMWG 298
Query: 334 --PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR--------KCDNRDD 383
P EE L S T + + KC+ A RR K D+RD
Sbjct: 299 GGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDY 356
Query: 384 FRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDASILTNGLS 442
+ NK + M K + + R + + ++ +TNG+
Sbjct: 357 YGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMV 416
Query: 443 RAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSH 502
A STG WS + +R G+ L R + + L + R Q + T KV R PS
Sbjct: 417 NAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQ 475
Query: 503 WGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL----ADDASYSL 557
WG +C TP+GE CGLVKNL + ++T + + PI + N G+E + ++ SY
Sbjct: 476 WGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP- 534
Query: 558 GGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRIL 617
F VF++G+ +GV +D V+ V I + V I D GR+
Sbjct: 535 -NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLC 593
Query: 618 RPLLVVENMGKI---KSLE--GKNY-TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKD 671
RP ++V+ K +E + Y F+ L ++E + EE DC A + KD
Sbjct: 594 RPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKD 653
Query: 672 IEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIR 731
TH E++ LLG+ G+IP+ +H+ + R YQ QA+G N R
Sbjct: 654 T--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAM-GKQAMGTIGYNQRNR 704
Query: 732 VDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQED 791
+DTL + L YPQ+P+ +T + ++ +L GQNA VAV + GY+ ED
Sbjct: 705 IDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQNATVAVMSYSGYDIED 753
Query: 792 SLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDD 851
+LV+N+ASL+RG R ++ K + Q + M++ + I R + LD D
Sbjct: 754 ALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD-AATRKPIWRHEILDAD 812
Query: 852 GFPFIGANLQSGDIVIGKYADS-------GA---------DHSIKLKHTERGMVQKVVLS 895
G G +++ +++ K + G+ D I K ++KV++S
Sbjct: 813 GICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMIS 872
Query: 896 SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
SN + + LRQ R P +GDKFSS HGQKGV G + QE+ PF GI PDI++NPH
Sbjct: 873 SNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPH 932
Query: 956 AFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLHRAGFSKWGT 1015
FPSR T G+ G Y T F V + E L R G++ G
Sbjct: 933 GFPSRMTVGKLIELLAGKAGVL------DGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGK 986
Query: 1016 ERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIK 1075
+ + G TGE + + I+ GP +YQ+L HM DK+ R GP LTRQP R R GG++
Sbjct: 987 DFVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLR 1046
Query: 1076 FGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCR 1135
GEMERDCLI +GA+ L ERL SD++++ +C +C + +C
Sbjct: 1047 LGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLG-------------YSGWCH 1093
Query: 1136 ICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
C S + +PY KLL QEL SM I
Sbjct: 1094 YCKSSCHVSSLRIPYACKLLFQELQSMNI 1122
Score = 140 (54.3 bits), Expect = 2.2e-120, Sum P(2) = 2.2e-120
Identities = 53/211 (25%), Positives = 96/211 (45%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
+F GLV I+S+N FI ++K + E + DP W +Y ++ G
Sbjct: 32 AFLKVKGLVKQHIDSFNYFINVEIKKIMKA-NEKVTSDA-DPM------WYLKYLNIYVG 83
Query: 90 QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
+++ SF + P RL++MTYS+ + V +++ +Q R+ + GR
Sbjct: 84 LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEYTRGSQ-RIIRNALPIGR- 135
Query: 150 QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKVFVAQE 209
++ + ++ G+ P + + +C D GGYFI+KG EKV + QE
Sbjct: 136 ----MPIMLRSSNCVLTGKTPA---------EFAKLNECPLDPGGYFIVKGVEKVILIQE 182
Query: 210 QICLKRLWVS----NSMGWTVAYKSENKRNR 236
Q+ R+ V ++G +V + K++R
Sbjct: 183 QLSKNRIIVEADRKGTVGASVTSSTHEKKSR 213
>CGD|CAL0002357 [details] [associations]
symbol:orf19.5847 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 CGD:CAL0002357
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710802.1 RefSeq:XP_710813.1 STRING:Q59M52 GeneID:3647582
GeneID:3647593 KEGG:cal:CaO19.13269 KEGG:cal:CaO19.5847
Uniprot:Q59M52
Length = 1157
Score = 1113 (396.9 bits), Expect = 5.9e-120, Sum P(2) = 5.9e-120
Identities = 356/1132 (31%), Positives = 531/1132 (46%)
Query: 82 RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTS 141
+Y +R G + KP G E + P RL+++TYS+ + V V+ YT+ R
Sbjct: 91 KYLDIRVGHKSTSKP------GVKEVILPPHECRLRDLTYSAPIYVDVE---YTRGR--- 138
Query: 142 DKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGY 195
K R ++ IGR+PVM++S+ C ++G+ + +C D GGY
Sbjct: 139 ---KIIRHNDLE------------IGRMPVMLRSNKCMLEGMSEATMAQVEECPLDPGGY 183
Query: 196 FIIKGAEKVFVAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGG 253
F++ G EKV + QEQ+ R+ V G A + + R SK I
Sbjct: 184 FVVNGTEKVILVQEQLSKNRIIVEADEKKGIVQASVTSSTHER-------KSKTYVITKN 236
Query: 254 EKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
+K+ L +S +IPI I+ A G+ SD EI+ L+ C S LF + + +
Sbjct: 237 DKIYLKHNSISEDIPIVIILKAAGIVSDLEILQLV---CGSDSNYQDLFVVNFEEAARLE 293
Query: 313 EFRKGRNALKYVDKLIK-----G----TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLG 362
F + + AL YV K +K G + G E+ + +L S ++KA ++
Sbjct: 294 VFTQ-QQALYYVGKRVKTIRRAGAPKLSQLQEGIEAIATTIIAHLTVSDLQFREKALYIA 352
Query: 363 YMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXX----KVHIAHARKRMAKALQRD 418
M + ++ A + D+RD NK K + + + K L++
Sbjct: 353 TMARRVVMAMHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKVLKKP 412
Query: 419 LYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
+ + ++ +T GL+RA STG WS + ER +G+ L R + + L
Sbjct: 413 SRTSEFDALLSINIHSNNITMGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGM 471
Query: 479 LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PI 537
+ R Q + + KV R PS +G +C TP+GE CGLVKNL + ++T E P+
Sbjct: 472 MTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEAPV 531
Query: 538 FEQLFNSGMEKL--ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQ 595
+ G E + D A+ + G F V+++G IG + + FV
Sbjct: 532 KKLCIALGCEPIFALDSATLHVDGNFGVYLNGTLIGTTRFPVKFVHDFRHLRRVGKVSAF 591
Query: 596 VEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIK-------SLEGKNYTFQALLDHGII 648
+ I + V I D GRI RPL++VEN GK K L + ++F L HG++
Sbjct: 592 ISIYTNTHHQAVHIATDGGRICRPLIIVEN-GKSKVTAEHLAKLINQEWSFDDFLTHGLV 650
Query: 649 ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
E + EE D A Y DI TH E++ +LG G+IP+ +H+ + R
Sbjct: 651 EYLDVNEENDSLIAL---YE-DDITANPGAIVTHLEIEPFTVLGAVAGLIPYPHHNQSPR 706
Query: 709 VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
YQ QAIG N R+DTL + + YPQ+P+ +T + + Y LP
Sbjct: 707 NTYQCAM-GKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELIE---YDK---LPA 759
Query: 769 PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD---NKEMQVK 825
GQNA VAV + GY+ ED+LV+N+ASL+RG R + +R ++ N +
Sbjct: 760 -----GQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCQVVRKNTVQLKKYPNHTQDIL 814
Query: 826 RRSSDDMVNFGKIQSKIGRVDSLDDDGFP-FIG---AN----LQSGDIVIGKYADSGADH 877
D N Q + D L + G F G AN SGD +G + A
Sbjct: 815 AGMRVDENNKPIFQHQALGPDGLGEVGSRIFNGQVFANKCVPTNSGDSTLGAQQEQRAAE 874
Query: 878 SIK-----LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGF 932
S + K E + +V++S +D+ + V LRQ R P LGDKFSS HGQKGV G
Sbjct: 875 SHREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGI 934
Query: 933 LESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATP 992
+ QE+ PF GI PDI++NPH FPSR T G+ +G Y T
Sbjct: 935 IVQQEDLPFNDSGISPDIIMNPHGFPSRMTVGKMIELISGKAGVL------NGSLEYGTC 988
Query: 993 FATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFR 1052
F ++ +++ L GFS G + LY G TGE +++ IF GP +YQ+L HM DK+ R
Sbjct: 989 FGGSKLEDMSKILIEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHAR 1048
Query: 1053 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
GP LTRQP R R GG++ GEMERDC+IA+GA+ L ERL SD++++ +C KC
Sbjct: 1049 ARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKC 1108
Query: 1113 KNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
+ +C C S ++++K +PY AKLL QEL SM I
Sbjct: 1109 GLMG-------------YNSWCTTCKSSENVIKMTIPYAAKLLFQELLSMNI 1147
Score = 88 (36.0 bits), Expect = 5.9e-120, Sum P(2) = 5.9e-120
Identities = 32/117 (27%), Positives = 55/117 (47%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
+F GLV ++SYN F+ L+K + E ++ DP E +Y +R G
Sbjct: 47 AFLKVKGLVKQHLDSYNYFVDVDLKKIIKA-NELVLSD-VDP----EFYVKYLDIRVGHK 100
Query: 92 TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
+ KP G E + P RL+++TYS+ + V V++ +K + + + GR
Sbjct: 101 STSKP------GVKEVILPPHECRLRDLTYSAPIYVDVEY-TRGRKIIRHNDLEIGR 150
>FB|FBgn0004463 [details] [associations]
symbol:RpIII128 "RNA polymerase III 128kD subunit"
species:7227 "Drosophila melanogaster" [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS;NAS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE013599 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
EMBL:X58826 EMBL:AY121645 PIR:S16894 RefSeq:NP_523706.1
UniGene:Dm.2692 ProteinModelPortal:P25167 SMR:P25167 IntAct:P25167
MINT:MINT-285299 STRING:P25167 PaxDb:P25167
EnsemblMetazoa:FBtr0087977 GeneID:36289 KEGG:dme:Dmel_CG8344
CTD:36289 FlyBase:FBgn0004463 GeneTree:ENSGT00690000102214
InParanoid:P25167 OMA:DMIMNPH OrthoDB:EOG4C2FRC PhylomeDB:P25167
ChiTaRS:RpIII128 GenomeRNAi:36289 NextBio:797763 Bgee:P25167
GermOnline:CG8344 Uniprot:P25167
Length = 1137
Score = 1107 (394.7 bits), Expect = 8.5e-119, Sum P(2) = 8.5e-119
Identities = 326/1055 (30%), Positives = 507/1055 (48%)
Query: 163 NIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRL 216
N++IGR+P+M++ C + G + +C D GGYF+++G EKV + QEQ+ ++
Sbjct: 138 NLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWNKM 197
Query: 217 WVSNSMGWT---VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFF 273
+ G V + K++R +V +SK G+ L ++ +IPI ++F
Sbjct: 198 LTEDFNGVVQCQVTSSTHEKKSRTLV----LSKH-----GKYYLKHNSMTDDIPIVVIFK 248
Query: 274 ALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYV-DKLI---- 328
ALGV SD+EI +LI D N AS+ DA N F + R AL+Y+ KL+
Sbjct: 249 ALGVVSDQEIQSLIGI---DSKSQNRFGASLIDAYN-LKVFTQQR-ALEYMGSKLVVKRF 303
Query: 329 -KGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDD 383
TT P E E + T + + + KA ++ MV+ ++ A + D+RD
Sbjct: 304 QSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDY 363
Query: 384 FRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDASILTNGLS 442
+ NK + + +++ + + + ++ A+ +T GL
Sbjct: 364 YGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMRAAQITAGLE 423
Query: 443 RAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSH 502
A S+G W+ + ER +G+ L R + + L + R Q + T KV R PS
Sbjct: 424 SAISSGNWTIKRFKMER-AGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQ 482
Query: 503 WGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSLGGK- 560
WG +C TP+GE CGLVKNL + ++T + E P+ FN+G+E + + + +
Sbjct: 483 WGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSGNPINNPN 542
Query: 561 -FKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRP 619
F VF++G+ +G+ + V + V + Q + I D GR+ RP
Sbjct: 543 VFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDGGRLCRP 602
Query: 620 LLVVEN---MGKIKSLEGKNY---TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIE 673
++VEN + K L+ N F L G+IE + EE D AW IE
Sbjct: 603 YVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNED----QIE 658
Query: 674 DKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
D+ TH E++ LLG+ G++P+ +H+ + R YQ QA+G N R+D
Sbjct: 659 DRT----THLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAM-GKQAMGMIGYNQKNRID 713
Query: 734 TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
+L + L YP P+ + S + + LP GQNA VAV + GY+ ED+L
Sbjct: 714 SLMYNLVYPHAPMVK---SKTIELTNFDK---LPA-----GQNATVAVMSYSGYDIEDAL 762
Query: 794 VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSK-IGRVDSLDDDG 852
++N+AS++RG R ++ K V Q R M + + +K I + D LD DG
Sbjct: 763 ILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKD--ALTNKVIFKHDVLDTDG 820
Query: 853 FPFIGANLQSGDIVIGKYADSGADHS---------------IKLKHTERGMVQKVVLSSN 897
G +Q+ I+I K + + I K E +++V++S+N
Sbjct: 821 IVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIERVMVSAN 880
Query: 898 DDGKNFSV-VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHA 956
+ ++F + + LRQ R P +GDKFSS HGQKGV G + QE+ PF GI PD+++NPH
Sbjct: 881 AE-EDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHG 939
Query: 957 FPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLHRAGFSKWGTE 1016
FPSR T G+ G Y T F V+ I +L R GF+ G +
Sbjct: 940 FPSRMTVGKTLELLGGKAGLL------EGKFHYGTAFGGSKVEDIQAELERHGFNYVGKD 993
Query: 1017 RLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
Y G TG + + I+ GP +YQ+L HM +DK+ R GP LTRQP R R GG++
Sbjct: 994 FFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRL 1053
Query: 1077 GEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRI 1136
GEMERDCLI++GA+ + ERL SD++++ +CR C +A +C
Sbjct: 1054 GEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAYC-------------SWCHF 1100
Query: 1137 CDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
C S ++ K ++PY KLL QEL SM + K E
Sbjct: 1101 CQSSANVSKISMPYACKLLFQELTSMNVVPKMILE 1135
Score = 83 (34.3 bits), Expect = 8.5e-119, Sum P(2) = 8.5e-119
Identities = 32/121 (26%), Positives = 53/121 (43%)
Query: 28 KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
K +F GLV I+S+N FI ++K + +V G DP +Y +R
Sbjct: 36 KLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKA--NELVTSGADPLFY----LKYLDVR 89
Query: 88 FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
G+ +D F H+ RL++ TYS+ + V +++ TQ R+ + G
Sbjct: 90 VGKPDIDD-GFNITKATTPHE-----CRLRDTTYSAPITVDIEYTRGTQ-RIKRNNLLIG 142
Query: 148 R 148
R
Sbjct: 143 R 143
>POMBASE|SPAC4G9.08c [details] [associations]
symbol:rpc2 "DNA-directed RNA polymerase III complex
subunit Rpc2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PomBase:SPAC4G9.08c PANTHER:PTHR20856 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222962
KO:K03021 OMA:DMIMNPH EMBL:DQ156226 PIR:T38867 RefSeq:NP_593690.1
ProteinModelPortal:Q10233 DIP:DIP-29536N STRING:Q10233
EnsemblFungi:SPAC4G9.08c.1 GeneID:2543393 KEGG:spo:SPAC4G9.08c
OrthoDB:EOG4K6KC8 NextBio:20804408 Uniprot:Q10233
Length = 1165
Score = 1109 (395.4 bits), Expect = 1.1e-116, Sum P(2) = 1.1e-116
Identities = 345/1117 (30%), Positives = 525/1117 (47%)
Query: 111 PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIP 170
P RL+++TY + + V ++ YT+ G+ Q +++ N+ IGR+P
Sbjct: 123 PHECRLRDLTYGANIYVDIE---YTR----------GK-QVVRRR-------NVPIGRMP 161
Query: 171 VMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNS--M 222
VM++S+ C + G + +C D GGYFI+KG EKV + QEQ+ R+ V
Sbjct: 162 VMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVILVQEQLSKNRIIVEAEPKK 221
Query: 223 G-WTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
G W + S + ++ K G+ L ++ +IPI ++ A+G+ SD+
Sbjct: 222 GLWQASVTSSTHERKSKTYVIT-------KNGKLYLKHNSVADDIPIVVVLKAMGLQSDQ 274
Query: 282 EIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIK-----GTT-FPP 335
EI L+ + S ++ SI + K + + + AL+Y+ +K G PP
Sbjct: 275 EIFELV--AGAEASYQDLFAPSIEECA-KLNIYT-AQQALEYIGARVKVNRRAGANRLPP 330
Query: 336 GESTEECMNTYLFPSLH----GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXX 391
E E + + ++ + KA ++G M + +L A + D+RD NK
Sbjct: 331 HEEALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRDYVGNKRLEL 390
Query: 392 XXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASI----LTNGLSRAFST 447
+ + + + L + + Y ++ +T G+ RA ST
Sbjct: 391 AGQLLALLFEDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVHSDHITQGMVRALST 450
Query: 448 GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
G WS + ER +G+ L R + + L + R Q + T KV R S +G +C
Sbjct: 451 GNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLC 509
Query: 508 FLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLFNSGMEKLADDASYSLG--GKFKVF 564
TP+GE CGLVKNL + T + + EPI + + G+E + + L G + V+
Sbjct: 510 TSDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFGIEDIHVISGRELHSHGTYLVY 569
Query: 565 VDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE 624
++G +G+ + FV+ + I + Q V I D GRI RPL++V+
Sbjct: 570 LNGAILGISRYPSLFVASFRKLRRSGKISPFIGIFINTHQRAVFISTDGGRICRPLIIVQ 629
Query: 625 N-MGKIKSL------EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKP 677
N + K++S EGK + F+ L G++E V EE D I +DI
Sbjct: 630 NGLPKVESKHIRLLKEGK-WGFEDFLKQGLVEYVDVNEENDSL----ISVYERDITPDT- 683
Query: 678 IKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSH 737
TH E++ +LG G+IP+ +H+ + R YQ QAIG N R+DTL +
Sbjct: 684 ---THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAM-GKQAIGAIAYNQLQRIDTLLY 739
Query: 738 QLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNR 797
+ YPQ+P+ +T + +G Y LP GQNA VA+ + GY+ ED+LV+N+
Sbjct: 740 LMVYPQQPMVKTKTIELIG---YDK---LPA-----GQNATVAIMSYSGYDIEDALVLNK 788
Query: 798 ASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN--FGKIQSKIGRVDSLDDDGFPF 855
+S++RG R + + V R D + G++ K G V+ DDG
Sbjct: 789 SSIDRGFGRCQVFHKHSVIVRKYPNGTHDRIGDPQRDPETGEVVWKHGVVE---DDGLAG 845
Query: 856 IGANLQSGDIVIGKYADSGA-DHSIKLKHT-----------------ERGMVQKVVLSSN 897
+G +Q G I + K + A D+SI L HT E G + KV+L++
Sbjct: 846 VGCRVQPGQIYVNKQTPTNALDNSITLGHTQTVESGYKATPMTYKAPEPGYIDKVMLTTT 905
Query: 898 DDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAF 957
D + V +RQ R P LGDKFSS HGQKGV G + QE+ PF QGI PDI++NPH F
Sbjct: 906 DSDQTLIKVLMRQTRRPELGDKFSSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGF 965
Query: 958 PSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLHRAGFSKWGTER 1017
PSR T G+ G Y T F V+ + L G++ G +
Sbjct: 966 PSRMTVGKMIELLSGKVGVLR------GTLEYGTCFGGTKVEDASRILVEHGYNYSGKDM 1019
Query: 1018 LYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFG 1077
L G TGE + + IF+GP +YQ+L HM DK+ R GP LTRQP R R GG++ G
Sbjct: 1020 LTSGITGETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLG 1079
Query: 1078 EMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRIC 1137
EMERDCLIA+GA+ L ERL SD+ + +C +C + +C C
Sbjct: 1080 EMERDCLIAYGASQLLLERLMISSDACDVDVCGQCGLLG-------------YKGWCNSC 1126
Query: 1138 DSGDDIVKANVPYGAKLLCQELFSMGIT--LKFDTEF 1172
S ++VK +PY AKLL QEL SM I L + EF
Sbjct: 1127 QSTREVVKMTIPYAAKLLFQELLSMNIVPRLALEDEF 1163
Score = 61 (26.5 bits), Expect = 1.1e-116, Sum P(2) = 1.1e-116
Identities = 26/104 (25%), Positives = 46/104 (44%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI---VEPGYDPSKKGEGEWRYASMRF 88
+F GLV ++SYN F+ L+K + E + VEP + +Y +R
Sbjct: 56 AFLKVKGLVKQHLDSYNYFVDVDLKKIVQA-NEKVTSDVEPWF--------YLKYLDIRV 106
Query: 89 GQ-VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQF 131
G V D + A + P RL+++TY + + V +++
Sbjct: 107 GAPVRTDADAIQAS-------ISPHECRLRDLTYGANIYVDIEY 143
>ZFIN|ZDB-GENE-041008-1 [details] [associations]
symbol:polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-041008-1
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102234 EMBL:AL954718 EMBL:CABZ01048450
EMBL:CABZ01048451 IPI:IPI00944344 Ensembl:ENSDART00000124865
ArrayExpress:F1QXY8 Bgee:F1QXY8 Uniprot:F1QXY8
Length = 1117
Score = 1130 (402.8 bits), Expect = 1.3e-114, P = 1.3e-114
Identities = 312/894 (34%), Positives = 454/894 (50%)
Query: 253 GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA---- 307
G++++S ++ E+PI I+F ALG SD++I+ I + +D ++ ++ S+ +A
Sbjct: 253 GQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 312
Query: 308 -DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVK 366
N F R A V K + + +E + TK KA FLGYMV
Sbjct: 313 EQNVALNFIGSRGAKPGVTKE-RRIKYAKEVLQKEVLPHVGVSDFCETK-KAYFLGYMVH 370
Query: 367 CLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVR 426
LL A GRR+ D+RD + NK + + K + Q+ + +
Sbjct: 371 RLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFN 430
Query: 427 PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
+E + I+++GL + +TG W K + +G+ L R TL LRR +
Sbjct: 431 -LELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPI 489
Query: 487 QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
GK+ R H + WG +C TP+G GLVKNL + +S S PI E L
Sbjct: 490 GRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWS 549
Query: 546 MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIKRDELQ 604
ME L + + ++ K+FV+G W+G+ KD ++ ++V + RD +
Sbjct: 550 MENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIRE 609
Query: 605 SEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEE 655
E+RI+ DAGRI RPLL+VE ++ ++K E NY++Q L+ G++E + T E
Sbjct: 610 REIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLE 669
Query: 656 EEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
EE A D+++K +THCE+ S +LG+ IIPF +H+ + R YQ
Sbjct: 670 EETVMLAM----TPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQ 725
Query: 713 SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
S QA+G TN +R+DTL+H L+YPQ+PL T + Y L EL
Sbjct: 726 SAM-GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME------Y-----LRFRELP 773
Query: 773 NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK---EMQVKRRSS 829
G N+IVA+ + GYNQEDS++MNR++++RG FRS RSYK + K + ++ + +
Sbjct: 774 AGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPT 833
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------DSG------ 874
+ G ++ I D LDDDG G + D++IGK DS
Sbjct: 834 RETCQ-G-MRHAI--YDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTK 889
Query: 875 ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
D S L+ +E G+V +V+++ N +G F + +R VR P +GDKF+S HGQKG G
Sbjct: 890 RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949
Query: 935 SQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFA 994
QE + I+GI PDI+INPHA PSR T G G ATPF
Sbjct: 950 RQEVRVYIIEGITPDIIINPHAIPSRMTVGHLIECLQGKVSAN------KGEIGDATPFN 1003
Query: 995 TP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
+V ++ L G+ G E LY+G TG + S IF+GPT+YQRL HM +DK+ R
Sbjct: 1004 DAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRA 1063
Query: 1054 TGPVHPLTRQPVADRKRF--GGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
GPV L RQP+ R R GG++FGEMERDC IAHGAA L ERLF SD YQ
Sbjct: 1064 RGPVQILNRQPMEGRSRRSDGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQ 1117
Score = 575 (207.5 bits), Expect = 3.0e-52, P = 3.0e-52
Identities = 181/625 (28%), Positives = 301/625 (48%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP-GYDPSKKGEGEWRYASMRFGQ 90
S+F+E GLV Q++S++EFI+ +Q+ + ++ S + E RY ++F Q
Sbjct: 32 SYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPPRYL-LKFEQ 90
Query: 91 VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
+ L KP+ + +G M P ARL+N+TYS+ + V + T K G EQ
Sbjct: 91 IYLSKPTHWERDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTIIKDGEEQ 139
Query: 151 YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKV 204
++ +T IG+IP+M++S C + G+ E +C D GGYFII G+EKV
Sbjct: 140 ---QQTQHQKT---FIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKV 193
Query: 205 FVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLVDMSKF-EDIKG---G 253
+AQE++ ++V AY E + R + + M++ + +K G
Sbjct: 194 LIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMMARGGQGVKKSAIG 253
Query: 254 EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
++++S ++ E+PI I+F ALG SD++I+ I + +D ++ ++ S+ +A
Sbjct: 254 QRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAF---- 309
Query: 313 EFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK----QKARFL 361
++ AL ++ +G PG + E E + + P + + +KA FL
Sbjct: 310 VIQEQNVALNFIGS--RGAK--PGVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYFL 365
Query: 362 GYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYG 421
GYMV LL A GRR+ D+RD + NK + + K + Q+ +
Sbjct: 366 GYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDR 425
Query: 422 DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
+ +E + I+++GL + +TG W K + +G+ L R TL LRR
Sbjct: 426 GKDFN-LELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 482 TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ 540
+ GK+ R H + WG +C TP+G GLVKNL + +S S PI E
Sbjct: 485 VNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 541 LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIK 599
L ME L + + ++ K+FV+G W+G+ KD ++ ++V +
Sbjct: 545 LEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMI 604
Query: 600 RDELQSEVRIFMDAGRILRPLLVVE 624
RD + E+RI+ DAGRI RPLL+VE
Sbjct: 605 RDIREREIRIYTDAGRICRPLLIVE 629
>TAIR|locus:2153323 [details] [associations]
symbol:NRPC2 "nuclear RNA polymerase C2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002688 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03021 OMA:DMIMNPH IPI:IPI00530040 RefSeq:NP_199327.4
UniGene:At.9250 ProteinModelPortal:F4KD38 PRIDE:F4KD38
EnsemblPlants:AT5G45140.1 GeneID:834550 KEGG:ath:AT5G45140
Uniprot:F4KD38
Length = 1161
Score = 1031 (368.0 bits), Expect = 3.0e-110, Sum P(2) = 3.0e-110
Identities = 340/1136 (29%), Positives = 530/1136 (46%)
Query: 86 MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
+RF +V + +PS N ++ P RL +MTY++ + V +++ V+ +K K
Sbjct: 81 LRFKKVRVGEPSII--NVNTVENINPHMCRLADMTYAAPIFVNIEY-VHGSH---GNKAK 134
Query: 146 TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIK 199
+ ++ N+IIGR+P+M++S C + G ++ G+C D GGYFIIK
Sbjct: 135 SAKD-------------NVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIK 181
Query: 200 GAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
G EKV + QEQ+ R+ + + K N N + +M+K + + EK
Sbjct: 182 GTEKVLLIQEQLSKNRIIIDSD-------KKGNI-NASVTSSTEMTKSKTVIQMEKEKIY 233
Query: 260 YFLST---EIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRK 316
FL +IPI I+ A+G+ SD+EIV ++ D L SI + ++ +K
Sbjct: 234 LFLHRFVKKIPIIIVLKAMGMESDQEIVQMVG---RDPRFSASLLPSIEECVSEGVNTQK 290
Query: 317 GRNALKYVDKLIKGTTF--PP---GESTEECMNTYL----FPSLHGTKQKARFLGYMVKC 367
AL Y++ +K ++ PP G + + +L P + +QK ++G M++
Sbjct: 291 --QALDYLEAKVKKISYGTPPEKDGRALSILRDLFLAHVPVPD-NNFRQKCFYVGVMLRR 347
Query: 368 LLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXX----KVHIAHARKRMAKALQRDLYGDR 423
+++A + D++D NK K ++ A K + L + + R
Sbjct: 348 MIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMLSEAIKNVDHILNKPIRASR 407
Query: 424 TVRPIEYYLDASI-LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
D+ ++ GL R STG + R R G+ L R + + ++ + +
Sbjct: 408 FDFSQCLNKDSRYSISLGLERTLSTGNFDIKRFRMHR-KGMTQVLTRLSFIGSMGFITKI 466
Query: 483 RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQL 541
Q + + KV R PS WG +C TP+GE+CGLVKNL + V+T E P+
Sbjct: 467 SPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMC 526
Query: 542 FNSGMEKLADDASYSLG--GKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIK 599
+ G+ L ++ L F V ++G +G F + V +
Sbjct: 527 YKLGVTDLEVLSAEELHTPDSFLVILNGLILGKHSRPQYFANSLRRLRRAGKIGEFVSVF 586
Query: 600 RDELQSEVRIFMDAGRILRPLLVVEN-MGKIKSLEGKNY-----TFQALLDHGIIELVGT 653
+E Q V + D GR+ RPL++ + + ++K K TF + G+IE +
Sbjct: 587 TNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDGVRTFDDFIRDGLIEYLDV 646
Query: 654 EEEEDCCTAW----GIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRV 709
EE + A G L + E K TH E++ +LG+ G+IP+ +H+ + R
Sbjct: 647 NEENNALIALYESDGTTELDEGAEAAKA-DTTHIEIEPFTILGVVAGLIPYPHHNQSPRN 705
Query: 710 LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
YQ QA+G N R+DTL + L YPQRPL T + +G Y
Sbjct: 706 TYQCAM-GKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVG---YD-------- 753
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
+L GQNA VAV GY+ ED++VMN++SL+RG R ++ A + ++
Sbjct: 754 KLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVA----MSQKYDNCTA 809
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY-------------ADSG-- 874
D ++ + ++ LDDDG G ++ DI I K +DS
Sbjct: 810 DRILIPQRTGPDAEKMQILDDDGLATPGEIIRPNDIYINKQVPVDTVTKFTSALSDSQYR 869
Query: 875 -ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
A K E +V +V L S+ G+ +R R P LGDKFSS HGQKGV G +
Sbjct: 870 PAREYFKGPEGETQVVDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGII 929
Query: 934 ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPF 993
QE+FPF+ GI PD+++NPH FPSR T G+ C G Y + F
Sbjct: 930 IQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVS-----C-GRFHYGSAF 983
Query: 994 ATPS-----VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
S V+ I+ L GFS G + LY G +GE V + IF+GP +YQ+L HM DK
Sbjct: 984 GERSGHADKVETISATLVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDK 1043
Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
+ R +GP +TRQP + + GG++ GEMERDCLIA+GA+ ++ERL SD +++ +
Sbjct: 1044 MHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQV 1103
Query: 1109 CRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
CR C + C C +GD+I +PY KLL QEL SM +
Sbjct: 1104 CRACGLLG-------YYNYKLKKAVCTTCKNGDNIATMKLPYACKLLFQELQSMNV 1152
Score = 78 (32.5 bits), Expect = 3.0e-110, Sum P(2) = 3.0e-110
Identities = 27/99 (27%), Positives = 47/99 (47%)
Query: 33 FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
F GLV ++S+N FI G+ K + + + DPS Y +RF +V
Sbjct: 39 FLKVRGLVKQHLDSFNYFINVGIHKIVKA--NSRITSTVDPSI-------Y--LRFKKVR 87
Query: 93 LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQF 131
+ +PS N ++ P RL +MTY++ + V +++
Sbjct: 88 VGEPSII--NVNTVENINPHMCRLADMTYAAPIFVNIEY 124
>ASPGD|ASPL0000054387 [details] [associations]
symbol:AN0321 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:BN001308 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:DMIMNPH EnsemblFungi:CADANIAT00002388 Uniprot:C8VU19
Length = 1225
Score = 1023 (365.2 bits), Expect = 2.1e-107, Sum P(2) = 2.1e-107
Identities = 331/1119 (29%), Positives = 516/1119 (46%)
Query: 105 DEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNI 164
+E + P RL++ TY++ ++V F+ Y + GR++ +K +
Sbjct: 176 EESTVTPHECRLRDTTYAA--PIQVDFE-YIR----------GRQRVRRK--------GV 214
Query: 165 IIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV 218
IGR+PVM++S C + +C D GGYFI+ G EKV + QEQ+ R+ V
Sbjct: 215 SIGRMPVMLRSSKCVLGNKTPAQMTVLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV 274
Query: 219 SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVS 278
+ S + R + +K + LS +IPI IL A+G+
Sbjct: 275 ETDPKKEIVQASVTSSSN--ER--KSKSYIILKKDRLYVKHNVLSEDIPIVILLKAMGIH 330
Query: 279 SDKEIVNLI---------DFTCEDCSILNI-LFASIHDADNKCDEFRKGRNALKYVDKLI 328
+DKE++ L+ DF + + +F D + R + Y +
Sbjct: 331 TDKEMMLLVAGVDKVYQEDFAINFEEAIKVGVFTQQQALDWIGSRIKINRKQMSYRRTHV 390
Query: 329 KGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKX 388
+ E+ + +++ + KA ++ M + +L A + D+RD NK
Sbjct: 391 QEAV----EAIASVIISHIEVKDMNFRPKAIYVANMARRVLMAKNDAALVDDRDYLGNKR 446
Query: 389 XXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVRPIEYY----LDASILTNGLSRA 444
+ + + + L V + + + ++ +T G++RA
Sbjct: 447 LELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRVEAFDAWSVIGMHSNHITQGMNRA 506
Query: 445 FSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWG 504
STG WS R ER +G+ L R + + L + R Q + T KV R PS +G
Sbjct: 507 ISTGNWSLKRFRMER-AGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFG 565
Query: 505 KICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSL--GGKF 561
IC TP+GE CGLVKNL + ++T+ E PI +F G E + + G +
Sbjct: 566 MICLADTPEGEACGLVKNLALMTHITTNDEEGPIKNLIFMLGAEDIQTVGGKEIYAPGSY 625
Query: 562 KVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLL 621
+ ++G + + + F++ V I + Q V + D GRI RPL+
Sbjct: 626 TISINGTPMALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPLI 685
Query: 622 VVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIED 674
+VE+ GK ++ L F L G++E V EE D A KDI D
Sbjct: 686 IVED-GKSRVKKHHLRKLRDGTMQFDDFLAQGLVEYVDVNEENDSLIA----IYEKDITD 740
Query: 675 KKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDT 734
TH E++ +LG G+IP+ +H+ + R YQ QAIG +N +R+D+
Sbjct: 741 TT----THMEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAM-GKQAIGAIASNQFLRIDS 795
Query: 735 LSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLV 794
+ + + YPQ+P+ ++ + L K Y LP GQNA VAV + GY+ ED+LV
Sbjct: 796 ILYLMVYPQKPMVKSRTIE-LTK--YDQ---LPA-----GQNATVAVMSYSGYDIEDALV 844
Query: 795 MNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSK--IGRVDSLDDDG 852
+N+ S++RG R + R Y V N M+ + D+++ ++ I + L+ DG
Sbjct: 845 LNKGSVDRGFGRCQVFRKY---VTN--MKSYSNGTKDILSPPTYENDAPIRKHALLESDG 899
Query: 853 FPFIGANLQSGDIVIGKY------------ADSGADHS-----IKLKHTERGMVQKVVLS 895
+G + +G++ I K +D+G S + K + + KV++S
Sbjct: 900 LAAVGEQVNAGEVYINKSTPDQSMSSGMPGSDAGRPISYNPTPMTYKLPDPAYIDKVMIS 959
Query: 896 SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
+ ++ V RQ R P +GDKFSS HGQKGV G + Q + PFT QGI PDI++NPH
Sbjct: 960 ATENENQIIKVLTRQTRRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGINPDIIMNPH 1019
Query: 956 AFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLHRAGFSKWGT 1015
FPSR T G+ SG Y T F+ V+ +T+ L GFS G
Sbjct: 1020 GFPSRMTVGKMLELVAGKAGVL------SGQHGYGTCFSGTPVEQMTQTLIDKGFSYGGK 1073
Query: 1016 ERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIK 1075
+ L G TGE + +F GP +YQ+L HM +DK+ R GP LTRQP R R GG++
Sbjct: 1074 DYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLR 1133
Query: 1076 FGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCR 1135
GEMERDCLIA+G + L ERL SD +++ +C +C + + +C+
Sbjct: 1134 LGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCEQCGFMGYL-------------NWCQ 1180
Query: 1136 ICDSGDDIVKANVPYGAKLLCQELFSMGIT--LKFDTEF 1172
C S +VK +PY AKLL QEL SM +T LK + EF
Sbjct: 1181 RCKSSRSVVKMVIPYAAKLLIQELMSMNVTARLKLEDEF 1219
Score = 59 (25.8 bits), Expect = 2.1e-107, Sum P(2) = 2.1e-107
Identities = 28/117 (23%), Positives = 52/117 (44%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
+F GLV I+SYN ++ L+K +S TI D ++ + F +
Sbjct: 109 AFLKVKGLVKQHIDSYNYLVEVQLKKIVES-SNTIRS---DVDHNFYIKFTDIYLGFPR- 163
Query: 92 TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
D+P +E + P RL++ TY++ ++V ++ + ++RV GR
Sbjct: 164 RADEPQDVRTEF-EESTVTPHECRLRDTTYAAPIQVDFEY-IRGRQRVRRKGVSIGR 218
>GENEDB_PFALCIPARUM|PFL0330c [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase III
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE014188 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA
RefSeq:XP_001350475.1 ProteinModelPortal:Q8I5X9
EnsemblProtists:PFL0330c:mRNA GeneID:811119 KEGG:pfa:PFL0330c
EuPathDB:PlasmoDB:PF3D7_1206600 ProtClustDB:CLSZ2444941
Uniprot:Q8I5X9
Length = 1450
Score = 542 (195.9 bits), Expect = 3.0e-104, Sum P(5) = 3.0e-104
Identities = 138/395 (34%), Positives = 198/395 (50%)
Query: 787 YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSK-IGRV 845
+N DS N++S + + ++++ K +K + S DD+ K+ +K I +
Sbjct: 1074 HNNIDSK-NNKSSYNNNVSKIDNVK--KDSYGHKN--ISNESKDDIK---KMANKDIRKY 1125
Query: 846 DSLDDDGFPFIGANLQSGDIVIGKYADSGA-DH---------------SIKLKHTERGMV 889
SLD DG IG ++ G + + K++ DH IK K +
Sbjct: 1126 HSLDMDGVASIGYLIKEGQLYVNKFSPKNIKDHVKDIGKVDINDFKINEIKYKSVYPSYI 1185
Query: 890 QKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPD 949
K++ + N +G + +RQ R P LGDKFSS HGQKGV+G L +QE+ PFT GI PD
Sbjct: 1186 DKIIFTENSEGLKLYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPD 1245
Query: 950 IVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLHRAG 1009
+++NPH FPSR T G+ G +Y + F+ + I E L R G
Sbjct: 1246 LIMNPHGFPSRMTVGKLLELVASKAAVM------DGEYKYGSIFSGTPFEEIAEILFRYG 1299
Query: 1010 FSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRK 1069
F+ E LY G TGE + + IF+GP +YQ+L HM +DK+ R GP LTRQP R
Sbjct: 1300 FNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRS 1359
Query: 1070 RFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXX 1129
+ GG++ GEMERDCLIA+G + L ERL SD ++IC C + +
Sbjct: 1360 KEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVCNVYICEDCGMMGYDL---------- 1409
Query: 1130 XXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
YC C D + +PY KLL QEL +M +
Sbjct: 1410 ---YCTFCKKCDKNIVIQMPYACKLLFQELQTMNV 1441
Score = 429 (156.1 bits), Expect = 3.0e-104, Sum P(5) = 3.0e-104
Identities = 130/398 (32%), Positives = 192/398 (48%)
Query: 432 LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGK 491
L I+T G+ A STG W+ + E+ SG+ L R + + + + R Q + K
Sbjct: 651 LPKDIITRGMQTAISTGNWNIKRFKMEK-SGVSQVLSRLSFIACIGMMTRLNSQFEKGRK 709
Query: 492 VGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL--EPIFEQLFNSGME-- 547
V R PS WG +C TP+GE+CGLVKNL + V+ E + E L+ G+E
Sbjct: 710 VSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNENLIEILYTLGVEDS 769
Query: 548 -KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSE 606
L + Y G F V ++G +GV K F+ V I + L +
Sbjct: 770 DSLTGEEIYK-EGVFFVILNGILLGVHKRPQKFMQRIRYLRRYGKIGQFVSIYDNFLHNA 828
Query: 607 VRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDC 659
+ I D GR+ RPL+++EN GK IK+LE F LL +IE + E+ +
Sbjct: 829 IYISTDGGRLCRPLIIIEN-GKSKLLPQHIKALENGTINFFDLLKSSVIEWIDVNEQNNL 887
Query: 660 CTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQ 719
A DI + TH E+D +LG+ G+IP+ NH+ + R YQ Q
Sbjct: 888 LIALNES----DIS----LSTTHLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCAM-GKQ 938
Query: 720 AIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIV 779
AIG N +R DTL + L YPQ+PL ++ + + + LP GQNAIV
Sbjct: 939 AIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEFI------NFEKLPA-----GQNAIV 987
Query: 780 AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV 817
AV GY+ ED++VMN++S++RG R +R + E+
Sbjct: 988 AVMSFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHSVEL 1025
Score = 166 (63.5 bits), Expect = 3.0e-104, Sum P(5) = 3.0e-104
Identities = 53/178 (29%), Positives = 88/178 (49%)
Query: 163 NIIIGRIPVMVKSDLCWM--KGVEK----GDCDFDHGGYFIIKGAEKVFVAQEQICLKRL 216
N+ IGR+PVM++SD+C + K E+ G+C +D GGYFI+KG E+V + QEQ+ R+
Sbjct: 347 NVEIGRLPVMLRSDICVLNNKSEEELMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRI 406
Query: 217 WVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWIL 271
V N + +E+K IV K + L +I + I+
Sbjct: 407 IVEMDIKHNICATITSTTAESKSRCAIV----------YKNNKLYLKHNSFIEDIGVCII 456
Query: 272 FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIK 329
A+G SD+EI +I + +N + S+++ N + + +AL Y+ K I+
Sbjct: 457 LRAMGYESDQEIFQMIG---SHKNYVNGILLSLYELYN--ENIKTNLDALLYIGKKIR 509
Score = 80 (33.2 bits), Expect = 3.0e-104, Sum P(5) = 3.0e-104
Identities = 31/121 (25%), Positives = 54/121 (44%)
Query: 28 KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
K ++ GLV I SYN FIK ++ ++ I++ D E Y +
Sbjct: 244 KLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDID-------EHFY--VE 294
Query: 88 FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
F +T+ PS E + P+ R +++TYS+ + V V++ V +T + + G
Sbjct: 295 FLDITVGTPS--VEENMIETKLTPQICRQRDLTYSAPIYVDVEY-VKGNSIITKNNVEIG 351
Query: 148 R 148
R
Sbjct: 352 R 352
Score = 51 (23.0 bits), Expect = 3.0e-104, Sum P(5) = 3.0e-104
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 350 SLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
S + + KAR + M++ +L + + + + D++D + NK
Sbjct: 552 SKYDFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNK 589
Score = 44 (20.5 bits), Expect = 1.3e-10, Sum P(4) = 1.3e-10
Identities = 22/103 (21%), Positives = 44/103 (42%)
Query: 764 HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM--FRSEHIRSYKAEVDNKE 821
H + + +NG N IV + LV+N+ +R +SE I++ K E D +
Sbjct: 1021 HSVELKKYFNGSNDIVLPS---------PLVINKLQQQRKEREIKSE-IKNEK-EKDGIK 1069
Query: 822 MQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
+ + D N + + ++D++ D + + +S D
Sbjct: 1070 QEHHHNNIDSKNNKSSYNNNVSKIDNVKKDSYGHKNISNESKD 1112
Score = 42 (19.8 bits), Expect = 4.1e-47, Sum P(2) = 4.1e-47
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 31 VSFFNEYGLVSHQINSYNEFIKNGLQKAFD 60
+ + YG + ++ Y+ F+ N + + D
Sbjct: 805 IRYLRRYGKIGQFVSIYDNFLHNAIYISTD 834
Score = 42 (19.8 bits), Expect = 2.1e-10, Sum P(4) = 2.1e-10
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 654 EEEEDCCTAWGIKYLL 669
E E DC A+G+ LL
Sbjct: 1368 EMERDCLIAYGVSNLL 1383
>UNIPROTKB|Q8I5X9 [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014188 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA RefSeq:XP_001350475.1
ProteinModelPortal:Q8I5X9 EnsemblProtists:PFL0330c:mRNA
GeneID:811119 KEGG:pfa:PFL0330c EuPathDB:PlasmoDB:PF3D7_1206600
ProtClustDB:CLSZ2444941 Uniprot:Q8I5X9
Length = 1450
Score = 542 (195.9 bits), Expect = 3.0e-104, Sum P(5) = 3.0e-104
Identities = 138/395 (34%), Positives = 198/395 (50%)
Query: 787 YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSK-IGRV 845
+N DS N++S + + ++++ K +K + S DD+ K+ +K I +
Sbjct: 1074 HNNIDSK-NNKSSYNNNVSKIDNVK--KDSYGHKN--ISNESKDDIK---KMANKDIRKY 1125
Query: 846 DSLDDDGFPFIGANLQSGDIVIGKYADSGA-DH---------------SIKLKHTERGMV 889
SLD DG IG ++ G + + K++ DH IK K +
Sbjct: 1126 HSLDMDGVASIGYLIKEGQLYVNKFSPKNIKDHVKDIGKVDINDFKINEIKYKSVYPSYI 1185
Query: 890 QKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPD 949
K++ + N +G + +RQ R P LGDKFSS HGQKGV+G L +QE+ PFT GI PD
Sbjct: 1186 DKIIFTENSEGLKLYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPD 1245
Query: 950 IVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLHRAG 1009
+++NPH FPSR T G+ G +Y + F+ + I E L R G
Sbjct: 1246 LIMNPHGFPSRMTVGKLLELVASKAAVM------DGEYKYGSIFSGTPFEEIAEILFRYG 1299
Query: 1010 FSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRK 1069
F+ E LY G TGE + + IF+GP +YQ+L HM +DK+ R GP LTRQP R
Sbjct: 1300 FNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRS 1359
Query: 1070 RFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXX 1129
+ GG++ GEMERDCLIA+G + L ERL SD ++IC C + +
Sbjct: 1360 KEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVCNVYICEDCGMMGYDL---------- 1409
Query: 1130 XXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
YC C D + +PY KLL QEL +M +
Sbjct: 1410 ---YCTFCKKCDKNIVIQMPYACKLLFQELQTMNV 1441
Score = 429 (156.1 bits), Expect = 3.0e-104, Sum P(5) = 3.0e-104
Identities = 130/398 (32%), Positives = 192/398 (48%)
Query: 432 LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGK 491
L I+T G+ A STG W+ + E+ SG+ L R + + + + R Q + K
Sbjct: 651 LPKDIITRGMQTAISTGNWNIKRFKMEK-SGVSQVLSRLSFIACIGMMTRLNSQFEKGRK 709
Query: 492 VGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL--EPIFEQLFNSGME-- 547
V R PS WG +C TP+GE+CGLVKNL + V+ E + E L+ G+E
Sbjct: 710 VSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNENLIEILYTLGVEDS 769
Query: 548 -KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSE 606
L + Y G F V ++G +GV K F+ V I + L +
Sbjct: 770 DSLTGEEIYK-EGVFFVILNGILLGVHKRPQKFMQRIRYLRRYGKIGQFVSIYDNFLHNA 828
Query: 607 VRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDC 659
+ I D GR+ RPL+++EN GK IK+LE F LL +IE + E+ +
Sbjct: 829 IYISTDGGRLCRPLIIIEN-GKSKLLPQHIKALENGTINFFDLLKSSVIEWIDVNEQNNL 887
Query: 660 CTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQ 719
A DI + TH E+D +LG+ G+IP+ NH+ + R YQ Q
Sbjct: 888 LIALNES----DIS----LSTTHLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCAM-GKQ 938
Query: 720 AIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIV 779
AIG N +R DTL + L YPQ+PL ++ + + + LP GQNAIV
Sbjct: 939 AIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEFI------NFEKLPA-----GQNAIV 987
Query: 780 AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV 817
AV GY+ ED++VMN++S++RG R +R + E+
Sbjct: 988 AVMSFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHSVEL 1025
Score = 166 (63.5 bits), Expect = 3.0e-104, Sum P(5) = 3.0e-104
Identities = 53/178 (29%), Positives = 88/178 (49%)
Query: 163 NIIIGRIPVMVKSDLCWM--KGVEK----GDCDFDHGGYFIIKGAEKVFVAQEQICLKRL 216
N+ IGR+PVM++SD+C + K E+ G+C +D GGYFI+KG E+V + QEQ+ R+
Sbjct: 347 NVEIGRLPVMLRSDICVLNNKSEEELMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRI 406
Query: 217 WVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWIL 271
V N + +E+K IV K + L +I + I+
Sbjct: 407 IVEMDIKHNICATITSTTAESKSRCAIV----------YKNNKLYLKHNSFIEDIGVCII 456
Query: 272 FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIK 329
A+G SD+EI +I + +N + S+++ N + + +AL Y+ K I+
Sbjct: 457 LRAMGYESDQEIFQMIG---SHKNYVNGILLSLYELYN--ENIKTNLDALLYIGKKIR 509
Score = 80 (33.2 bits), Expect = 3.0e-104, Sum P(5) = 3.0e-104
Identities = 31/121 (25%), Positives = 54/121 (44%)
Query: 28 KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
K ++ GLV I SYN FIK ++ ++ I++ D E Y +
Sbjct: 244 KLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDID-------EHFY--VE 294
Query: 88 FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
F +T+ PS E + P+ R +++TYS+ + V V++ V +T + + G
Sbjct: 295 FLDITVGTPS--VEENMIETKLTPQICRQRDLTYSAPIYVDVEY-VKGNSIITKNNVEIG 351
Query: 148 R 148
R
Sbjct: 352 R 352
Score = 51 (23.0 bits), Expect = 3.0e-104, Sum P(5) = 3.0e-104
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 350 SLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
S + + KAR + M++ +L + + + + D++D + NK
Sbjct: 552 SKYDFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNK 589
Score = 44 (20.5 bits), Expect = 1.3e-10, Sum P(4) = 1.3e-10
Identities = 22/103 (21%), Positives = 44/103 (42%)
Query: 764 HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM--FRSEHIRSYKAEVDNKE 821
H + + +NG N IV + LV+N+ +R +SE I++ K E D +
Sbjct: 1021 HSVELKKYFNGSNDIVLPS---------PLVINKLQQQRKEREIKSE-IKNEK-EKDGIK 1069
Query: 822 MQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
+ + D N + + ++D++ D + + +S D
Sbjct: 1070 QEHHHNNIDSKNNKSSYNNNVSKIDNVKKDSYGHKNISNESKD 1112
Score = 42 (19.8 bits), Expect = 4.1e-47, Sum P(2) = 4.1e-47
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 31 VSFFNEYGLVSHQINSYNEFIKNGLQKAFD 60
+ + YG + ++ Y+ F+ N + + D
Sbjct: 805 IRYLRRYGKIGQFVSIYDNFLHNAIYISTD 834
Score = 42 (19.8 bits), Expect = 2.1e-10, Sum P(4) = 2.1e-10
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 654 EEEEDCCTAWGIKYLL 669
E E DC A+G+ LL
Sbjct: 1368 EMERDCLIAYGVSNLL 1383
>DICTYBASE|DDB_G0288449 [details] [associations]
symbol:rpc2 "RNA polymerase III, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0016539 "intein-mediated
protein splicing" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR006141 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PROSITE:PS50817
PROSITE:PS50818 dictyBase:DDB_G0288449 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR
EMBL:AAFI02000111 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
InterPro:IPR003587 SMART:SM00306 GO:GO:0016539 TIGRFAMs:TIGR01443
TIGRFAMs:TIGR01445 HSSP:P08518 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 RefSeq:XP_636731.1
STRING:Q54IZ9 EnsemblProtists:DDB0216313 GeneID:8626608
KEGG:ddi:DDB_G0288449 KO:K03021 OMA:IRRIIMA Uniprot:Q54IZ9
Length = 1608
Score = 791 (283.5 bits), Expect = 5.2e-101, Sum P(2) = 5.2e-101
Identities = 228/674 (33%), Positives = 320/674 (47%)
Query: 516 NCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGV 572
NCGLVKN + V+T E P+ +N G++ + L + + V ++G IG+
Sbjct: 969 NCGLVKNFALMSHVTTDDSEGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQIIGI 1028
Query: 573 CKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK---- 628
FV+ V I +++ Q + + D GR+ RP+++V++
Sbjct: 1029 HNSPDYFVTTLRKMRRAGRIREFVSICKNKAQQTISVACDGGRLCRPVIIVDDQRPRLTQ 1088
Query: 629 --IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELD 686
I+ L+ TF + GIIE + EE D AW + +P TH E++
Sbjct: 1089 EHIEDLKDGLRTFDDFIREGIIEYLDVNEENDSFLAWREAAI-------QPWT-THLEIE 1140
Query: 687 MSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPL 746
+LG G+IP+ +H+ + R YQ QAIG N R+DTL + L + QRPL
Sbjct: 1141 PFTMLGCVAGLIPYPHHNQSPRNTYQCAM-GKQAIGAIAYNQLTRIDTLLYLLVHTQRPL 1199
Query: 747 FRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFR 806
+T D L + LP G NA VAV + GY+ ED+LVMN+ASL+RG R
Sbjct: 1200 CQTRTIDLLNW------YKLPA-----GHNATVAVMSYSGYDIEDALVMNKASLDRGFGR 1248
Query: 807 SEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIV 866
++ + R N + Q K G +DS DG G Q G I+
Sbjct: 1249 CIVLKKQVTSIKKHGNDTSDRIFPPTPNDLR-QPKYGLLDS---DGIAKPGELAQKGQIL 1304
Query: 867 IGKYA---------------DSGADHS-IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
+ KY+ DS S + K+ + KV+L+S DD + + +R
Sbjct: 1305 VNKYSPLNTIDATPNPELIPDSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQLLIKMLMRS 1364
Query: 911 VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXX 970
R P LGDKFSS HGQKGV G + QE+ PF+ GI PDI++NPH FPSR T G+
Sbjct: 1365 TRRPELGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELL 1424
Query: 971 XXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSL 1030
SG + T F V+ I++ L GFS G + + G TGE +
Sbjct: 1425 AGKAGVL------SGKFGFGTCFGGDRVENISKVLISKGFSYGGKDYVTSGVTGEPLACF 1478
Query: 1031 IFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAA 1090
IF GP FYQ+L HM DK+ R GP LTRQP R R GG++ GEMERDCLI +GA+
Sbjct: 1479 IFFGPIFYQKLKHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGAS 1538
Query: 1091 ANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPY 1150
A + ERL SD + ++ C+ C + YC+ C S DI +PY
Sbjct: 1539 ALIMERLMISSDRFTVYACKNCGFLG-------------YEGYCQYCKSSVDISTIQIPY 1585
Query: 1151 GAKLLCQELFSMGI 1164
KLL QEL +M I
Sbjct: 1586 ACKLLFQELQAMNI 1599
Score = 285 (105.4 bits), Expect = 5.2e-101, Sum P(2) = 5.2e-101
Identities = 112/456 (24%), Positives = 195/456 (42%)
Query: 86 MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
+RF + + P+ N D + P+ RL++MTYS+ + V ++ YT+ +
Sbjct: 88 VRFTDINVGSPTSTEDNL-DSVQLTPQRCRLRDMTYSAPIFVNIE---YTRNK------- 136
Query: 146 TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM--KGVEK----GDCDFDHGGYFIIK 199
Q I K ++ IG IP+M++S C + K E+ G+C D GGYFI++
Sbjct: 137 ----QIISKR-------DVHIGNIPIMLRSSNCVLSKKTPEQMAALGECPMDPGGYFIVR 185
Query: 200 GAEKVFVAQEQICLKRLWVS-NSMGW---TVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
G EKV + EQ+ R+ + +S G +V + +++R V L K +
Sbjct: 186 GQEKVILNHEQLSKNRIIIEMDSKGLPSASVTSSTHERKSRTGVTL---------KNEKL 236
Query: 256 VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
L +IP+ I+ +GV +D+E+ L+ D LN + S+ + KC
Sbjct: 237 YLKHNTFGEDIPVAIVLKGMGVETDQEMAQLVG---SDDVFLNAITPSLEECQ-KCG-VH 291
Query: 316 KGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGT------------KQKARFLGY 363
AL Y+ IK P G ++ + L G + K +L
Sbjct: 292 TAAQALDYLGSRIKVFRRPYGVQNKKTKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSL 351
Query: 364 MVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDR 423
M++ ++ A + D++D + NK + + + K++ + +
Sbjct: 352 MIRRIIMASKDKSCLDDKDYYGNKRIELSGQLISLLFEDCFKKFQSELKKSVDQAIAKAN 411
Query: 424 TVRPIEY--YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
++ + +TNG + A S+G W+ R ER SG+ L R + + + + R
Sbjct: 412 RAENLDLPKLIRTDTITNGFTHAISSGQWNLKRFRMER-SGVSQVLSRLSYISCMGMMTR 470
Query: 482 TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENC 517
+ Q + T KV R PS WG +C TP+GE C
Sbjct: 471 IQSQFEKTRKVAGPRSLQPSQWGMLCPSDTPEGEAC 506
Score = 80 (33.2 bits), Expect = 2.2e-79, Sum P(2) = 2.2e-79
Identities = 33/117 (28%), Positives = 56/117 (47%)
Query: 28 KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
K +F GLV I+S+N FI ++K + E + DPS Y +R
Sbjct: 41 KLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKA-NERLTAEN-DPS--------YF-VR 89
Query: 88 FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQ-KRVTSDK 143
F + + P+ N D + P+ RL++MTYS+ + V ++ YT+ K++ S +
Sbjct: 90 FTDINVGSPTSTEDNL-DSVQLTPQRCRLRDMTYSAPIFVNIE---YTRNKQIISKR 142
>WB|WBGene00017300 [details] [associations]
symbol:rpc-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0003677 GO:GO:0000003 GO:GO:0006351
GO:GO:0003899 EMBL:FO081001 HSSP:P08518 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH PIR:T16011 RefSeq:NP_498192.2 ProteinModelPortal:Q27492
STRING:Q27492 PaxDb:Q27492 EnsemblMetazoa:F09F7.3.1
EnsemblMetazoa:F09F7.3.2 GeneID:175767 KEGG:cel:CELE_F09F7.3
UCSC:F09F7.3.1 CTD:175767 WormBase:F09F7.3 InParanoid:Q27492
NextBio:889574 Uniprot:Q27492
Length = 1154
Score = 860 (307.8 bits), Expect = 3.8e-91, Sum P(2) = 3.8e-91
Identities = 256/842 (30%), Positives = 383/842 (45%)
Query: 355 KQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKA 414
K KA +LG M + L+Q G D+RD + NK + + +
Sbjct: 341 KMKAIYLGLMTRRLIQTELGENGLDDRDFYGNKRLELAGSLLSLLFEDVFKRFNSELKRI 400
Query: 415 LQRDLYGDRTVRPIEY--YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
L P++ ++ ++TN + A STG W R ER+ G+ L R +
Sbjct: 401 ADNALMKTMAA-PLDIVKHMRQDMITNTIVNAMSTGNWIIKRFRMERL-GVTQVLSRLSY 458
Query: 473 LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTS 532
+ L + R + T KV R PS WG +C TP+GE CGLVKNL + ++T
Sbjct: 459 ISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTD 518
Query: 533 ILE-PIFEQLFNSGMEKLADDASYSLGGKFK---VFVDGDWIGVCKDSLSFVSXXXXXXX 588
E P+ L NSG+E L + +S K + +F++G IG D V
Sbjct: 519 SDEKPVLRLLLNSGVEDL-HNVHFSHVNKPENTLIFLNGVLIGTAVDPERVVKAVRDLRR 577
Query: 589 XXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSL-EGKNYTFQA 641
V + R V I D GR+ RP ++V+N ++ L EGK F+
Sbjct: 578 SGLLSEFVSVSRSLTNRSVFISSDGGRLCRPYIIVKNGTPMLTQAHVQELKEGK-MIFED 636
Query: 642 LLDHGIIELVGTEEEEDCCTA-WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPF 700
+D GI+E + E D A +G ++I + TH E++ LLG+ G+IP+
Sbjct: 637 FVDDGIVEYLDVNEMNDALIAVYG-----REIGPET----THLEIEPFTLLGVCAGLIPY 687
Query: 701 ANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG--KP 758
+H+ + R YQ QA+G N R+D++ + L YPQRPL ++ + K
Sbjct: 688 PHHNQSPRNTYQCAM-GKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEKL 746
Query: 759 GYGHNHILPRPEL--YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHI-RSYKA 815
G N I+ Y+ ++A+V L LV + ++ R
Sbjct: 747 PAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTFDRLLGP 806
Query: 816 EVD-NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFI------GANLQSGDI-VI 867
+D N + + + D ++I ++ + P + GA+ + I +
Sbjct: 807 ALDPNTRKPIFKHKNLDQEGIVFAGARIMPKQTIINKHMPVVSGESGPGASASANTIGIA 866
Query: 868 GKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQK 927
G+ D D SI K ++V+L+ N+D + V LRQ R P LGDKFSS HGQK
Sbjct: 867 GRQVDY-KDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRHGQK 925
Query: 928 GVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLK 987
GV G + QE+ PF G+VPD+++NPH +PSR T G+ +G
Sbjct: 926 GVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVV------NGTY 979
Query: 988 RYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
Y T F V + E+L G++ G + L G TG+ + + I+ GP +YQ+L HM D
Sbjct: 980 HYGTAFGGDQVKDVCEELAACGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLD 1039
Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
K+ R GP LTRQP R R GG++ GEMERDCLIA+GA+ L ERL SD +++
Sbjct: 1040 KMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLMVSSDEFKVD 1099
Query: 1108 ICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLK 1167
+C C VI +C+ C S + +PY KLL QEL SM I +
Sbjct: 1100 VCTGC----GVIGSKG---------WCQKCRSSKSMANIKIPYACKLLFQELQSMNIVPR 1146
Query: 1168 FD 1169
D
Sbjct: 1147 LD 1148
Score = 568 (205.0 bits), Expect = 3.4e-53, Sum P(2) = 3.4e-53
Identities = 227/829 (27%), Positives = 364/829 (43%)
Query: 86 MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
+++ + + KPS G + P+ RL++MTYS+ + V ++ YT+
Sbjct: 77 LKYLDIRIGKPSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIE---YTR--------- 124
Query: 146 TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIK 199
G ++ +K+ +IIGR+P+M++S C ++ + + + C +D GGYF++K
Sbjct: 125 -GNQRVFKKD--------LIIGRMPIMLRSSKCILRDLAEEELARVQECPYDPGGYFVVK 175
Query: 200 GAEKVFVAQEQICLKRLWVS-NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
G+EKV + QEQ+ R+ V NS + R V M K G+ +
Sbjct: 176 GSEKVILIQEQLSKNRIMVGRNSSKELQCEVLSSTSERKSKTYVTMKK------GKYSVR 229
Query: 259 VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
L+ ++P+ I+F A+GV SD +IV+ I + S FA + + + +
Sbjct: 230 HNQLTDDVPVSIIFKAMGVESDFDIVSTIGHEEKYVSA----FAQTLEESINAGVYTQ-Q 284
Query: 319 NALKYVDKLIKGTTF-P----PGESTE--------ECMNTYLFPSL--H-----GT-KQK 357
AL YV +K F P PG S E ++ +L S+ H G K K
Sbjct: 285 QALAYVTSKVKARKFTPFGSLPGTSVSVLTPPKEHEAVD-FLSNSMITHIACPDGNFKMK 343
Query: 358 ARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQR 417
A +LG M + L+Q G D+RD + NK + + +
Sbjct: 344 AIYLGLMTRRLIQTELGENGLDDRDFYGNKRLELAGSLLSLLFEDVFKRFNSELKRIADN 403
Query: 418 DLYGDRTVRPIEY--YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
L P++ ++ ++TN + A STG W R ER+ G+ L R + +
Sbjct: 404 ALMKTMAA-PLDIVKHMRQDMITNTIVNAMSTGNWIIKRFRMERL-GVTQVLSRLSYISA 461
Query: 476 LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE 535
L + R + T KV R PS WG +C TP+GE CGLVKNL + ++T E
Sbjct: 462 LGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDE 521
Query: 536 -PIFEQLFNSGMEKLADDASYSLGGKFK---VFVDGDWIGVCKDSLSFVSXXXXXXXXXX 591
P+ L NSG+E L + +S K + +F++G IG D V
Sbjct: 522 KPVLRLLLNSGVEDL-HNVHFSHVNKPENTLIFLNGVLIGTAVDPERVVKAVRDLRRSGL 580
Query: 592 XPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELV 651
V + R V I D GR+ RP ++V+N G QA H + EL
Sbjct: 581 LSEFVSVSRSLTNRSVFISSDGGRLCRPYIIVKN--------GTPMLTQA---H-VQELK 628
Query: 652 -GTEEEEDCCTAWGIKYL-LKDIEDK------KPI--KFTHCELDMSFLLGLSCGIIPFA 701
G ED ++YL + ++ D + I + TH E++ LLG+ G+IP+
Sbjct: 629 EGKMIFEDFVDDGIVEYLDVNEMNDALIAVYGREIGPETTHLEIEPFTLLGVCAGLIPYP 688
Query: 702 NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
+H+ + R YQ QA+G N R+D++ + L YPQRPL ++ +
Sbjct: 689 HHNQSPRNTYQCAM-GKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELT------ 741
Query: 762 HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
+ LP G N I+AV + GY+ ED+LV+N+ASL+RG R + K
Sbjct: 742 NFEKLPA-----GANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYP 796
Query: 822 MQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY 870
Q R ++ + I + +LD +G F GA + +I K+
Sbjct: 797 NQTFDRLLGPALD-PNTRKPIFKHKNLDQEGIVFAGARIMPKQTIINKH 844
Score = 68 (29.0 bits), Expect = 3.8e-91, Sum P(2) = 3.8e-91
Identities = 26/111 (23%), Positives = 49/111 (44%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
+F GLV + S++ F++ ++ S + I +P+ +Y +R G
Sbjct: 34 AFLKVRGLVKQHLVSFDHFVQEEIRSIMLS-NQKITSDA-NPNFY----LKYLDIRIG-- 85
Query: 92 TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSD 142
KPS G + P+ RL++MTYS+ + V +++ Q+ D
Sbjct: 86 ---KPSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIEYTRGNQRVFKKD 133
>UNIPROTKB|Q9H9Y6 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase I subunit RPA2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
EMBL:AC012442 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 EMBL:AK022533 EMBL:AK022890
EMBL:AK128044 IPI:IPI00026445 IPI:IPI01010348 RefSeq:NP_001131076.1
RefSeq:NP_061887.2 UniGene:Hs.741552 ProteinModelPortal:Q9H9Y6
SMR:Q9H9Y6 DIP:DIP-27538N IntAct:Q9H9Y6 MINT:MINT-4727878
STRING:Q9H9Y6 PhosphoSite:Q9H9Y6 DMDM:92090637 SWISS-2DPAGE:Q9H9Y6
PaxDb:Q9H9Y6 PRIDE:Q9H9Y6 Ensembl:ENST00000263331
Ensembl:ENST00000417433 GeneID:84172 KEGG:hsa:84172 UCSC:uc002thw.2
UCSC:uc010fkn.2 CTD:84172 GeneCards:GC02P113299 H-InvDB:HIX0002380
HGNC:HGNC:20454 HPA:HPA037528 MIM:602000 neXtProt:NX_Q9H9Y6
PharmGKB:PA130601182 HOVERGEN:HBG017742 InParanoid:Q9H9Y6
OrthoDB:EOG4H9XJP PhylomeDB:Q9H9Y6 GenomeRNAi:84172 NextBio:73536
ArrayExpress:Q9H9Y6 Bgee:Q9H9Y6 CleanEx:HS_POLR1B
Genevestigator:Q9H9Y6 GermOnline:ENSG00000125630 GO:GO:0017126
Gene3D:2.40.50.150 Uniprot:Q9H9Y6
Length = 1135
Score = 728 (261.3 bits), Expect = 4.7e-85, Sum P(3) = 4.7e-85
Identities = 192/502 (38%), Positives = 257/502 (51%)
Query: 681 THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
TH EL LL + IPF++H+ + R +YQ Q Q +GFP R D ++L
Sbjct: 657 THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQ 715
Query: 741 YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
PQ PL R + D Y P G NAIVAV + GY+ ED++++N+AS
Sbjct: 716 TPQSPLVRPSMYDYYDMDNY--------PI---GTNAIVAVISYTGYDMEDAMIVNKASW 764
Query: 801 ERGMFRSEHIRSYKAE-VDNKEMQVKRRSSDDMVNFGKIQSKIGRV-DSLDDDGFPFIGA 858
ERG H YK+E +D E K + D + FG I+ RV LDDDG PFIGA
Sbjct: 765 ERGF---AHGSVYKSEFIDLSE---KIKQGDSSLVFG-IKPGDPRVLQKLDDDGLPFIGA 817
Query: 859 NLQSGDIVIGKY-ADSGADHSIKLKHTERGMVQKVVLSSNDDGKN-FSVV--SLRQVRSP 914
LQ GD ++G + K E +V + + SND G F V ++R R+P
Sbjct: 818 KLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNP 877
Query: 915 CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXX 974
+GDKF+S HGQKG+L L E+ PFT G+VPDI+ NPH FPSR T G
Sbjct: 878 TIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKS 937
Query: 975 XXXXXXXXCSGLKRYATPFA----TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSL 1030
GL ATPF +++ E L AG++ +GTERLY G +G + +
Sbjct: 938 AALH------GLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEAD 991
Query: 1031 IFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAA 1090
IFIG +YQRL HM DK + R TG +T QP+ R GGI+FGEMERD L+AHG +
Sbjct: 992 IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTS 1051
Query: 1091 ANLHERLFTLSDSYQMHICRKCKNVANVI--QXXXXXXXXXXXPY-CRICDSGDDIVKAN 1147
LH+RLF SD H+C KC ++ + + + Y C +C D I +
Sbjct: 1052 FLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVS 1111
Query: 1148 VPYGAKLLCQELFSMGITLKFD 1169
VPY + EL +M I +K D
Sbjct: 1112 VPYVFRYFVAELAAMNIKVKLD 1133
Score = 152 (58.6 bits), Expect = 4.7e-85, Sum P(3) = 4.7e-85
Identities = 112/458 (24%), Positives = 171/458 (37%)
Query: 333 FPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXX 392
+P ++ E N + L +K L M + L G DN D N+
Sbjct: 318 YPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTP 377
Query: 393 XXXXXXXXK-------VHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAF 445
K V I A + A+ + D +R +D LT F
Sbjct: 378 GQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGID---LTKPFEYLF 434
Query: 446 STGAW-SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG-KVGDARYPHPSHW 503
+TG S + SG+ + N ++ L R + + + R P W
Sbjct: 435 ATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESW 494
Query: 504 GKICFLSTPDGENCGLVKNLGVTGLVSTSIL--EPIFEQLFNSGMEKLADDASY-SLGGK 560
G +C + TPDGE CGL+ +L V T + I L N G+ + D A + S
Sbjct: 495 GFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPI-DGAPHRSYSEC 553
Query: 561 FKVFVDGDWIG-VCKDSLSFVSXXXXXXXXXXX---PTQVEIK------RDELQSEVRIF 610
+ V +DG +G V KD ++ P +E+ + L + +F
Sbjct: 554 YPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLF 613
Query: 611 MDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK 670
R++RP V+N+ GK EL+GT E+ A + +
Sbjct: 614 TTPCRLVRP---VQNLAL-----GKE------------ELIGTMEQIFMNVA-----IFE 648
Query: 671 DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
D E + TH EL LL + IPF++H+ + R +YQ Q Q +GFP
Sbjct: 649 D-EVFAGVT-THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM-GKQTMGFPLLTYQD 705
Query: 731 RVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHIL 766
R D ++L PQ PL R + D Y G N I+
Sbjct: 706 RSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIV 743
Score = 82 (33.9 bits), Expect = 4.7e-85, Sum P(3) = 4.7e-85
Identities = 59/241 (24%), Positives = 96/241 (39%)
Query: 166 IGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF---VAQEQ---ICL 213
+G +P+MVKS LC ++ +E + + GGYFII G EKV + + I +
Sbjct: 134 LGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAM 193
Query: 214 KR-LWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTE--IPIWI 270
R W + G+T Y R V+M+ ++ G +L+ + +P+
Sbjct: 194 IRPKWKTRGPGYT-QYGVSMHCVREEHSAVNMN-LHYLENGTVMLNFIYRKELFFLPLGF 251
Query: 271 LFFALGVSSDKEIVNLIDFTCEDCSIL-NILFASIHDA-DNKCDEFRKGRNALK--YVDK 326
AL SD +I + ED S L N + + + C ++ N L + K
Sbjct: 252 ALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGECFRVK 311
Query: 327 LIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRN 386
L +P ++ E N + L +K L M + L G DN D N
Sbjct: 312 LNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVN 371
Query: 387 K 387
+
Sbjct: 372 Q 372
>UNIPROTKB|F5H643 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04565 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0005730 GO:GO:0003677 GO:GO:0009790 GO:GO:0009303
GO:GO:0007566 EMBL:AC012442 GO:GO:0005736 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 GO:GO:0017126
Gene3D:2.40.50.150 IPI:IPI01013053 ProteinModelPortal:F5H643
Ensembl:ENST00000537335 ArrayExpress:F5H643 Bgee:F5H643
Uniprot:F5H643
Length = 924
Score = 728 (261.3 bits), Expect = 7.1e-85, Sum P(2) = 7.1e-85
Identities = 192/502 (38%), Positives = 257/502 (51%)
Query: 681 THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
TH EL LL + IPF++H+ + R +YQ Q Q +GFP R D ++L
Sbjct: 446 THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQ 504
Query: 741 YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
PQ PL R + D Y P G NAIVAV + GY+ ED++++N+AS
Sbjct: 505 TPQSPLVRPSMYDYYDMDNY--------PI---GTNAIVAVISYTGYDMEDAMIVNKASW 553
Query: 801 ERGMFRSEHIRSYKAE-VDNKEMQVKRRSSDDMVNFGKIQSKIGRV-DSLDDDGFPFIGA 858
ERG H YK+E +D E K + D + FG I+ RV LDDDG PFIGA
Sbjct: 554 ERGF---AHGSVYKSEFIDLSE---KIKQGDSSLVFG-IKPGDPRVLQKLDDDGLPFIGA 606
Query: 859 NLQSGDIVIGKY-ADSGADHSIKLKHTERGMVQKVVLSSNDDGKN-FSVV--SLRQVRSP 914
LQ GD ++G + K E +V + + SND G F V ++R R+P
Sbjct: 607 KLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNP 666
Query: 915 CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXX 974
+GDKF+S HGQKG+L L E+ PFT G+VPDI+ NPH FPSR T G
Sbjct: 667 TIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKS 726
Query: 975 XXXXXXXXCSGLKRYATPFA----TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSL 1030
GL ATPF +++ E L AG++ +GTERLY G +G + +
Sbjct: 727 AALH------GLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEAD 780
Query: 1031 IFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAA 1090
IFIG +YQRL HM DK + R TG +T QP+ R GGI+FGEMERD L+AHG +
Sbjct: 781 IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTS 840
Query: 1091 ANLHERLFTLSDSYQMHICRKCKNVANVI--QXXXXXXXXXXXPY-CRICDSGDDIVKAN 1147
LH+RLF SD H+C KC ++ + + + Y C +C D I +
Sbjct: 841 FLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVS 900
Query: 1148 VPYGAKLLCQELFSMGITLKFD 1169
VPY + EL +M I +K D
Sbjct: 901 VPYVFRYFVAELAAMNIKVKLD 922
Score = 152 (58.6 bits), Expect = 7.1e-85, Sum P(2) = 7.1e-85
Identities = 112/458 (24%), Positives = 171/458 (37%)
Query: 333 FPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXX 392
+P ++ E N + L +K L M + L G DN D N+
Sbjct: 107 YPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTP 166
Query: 393 XXXXXXXXK-------VHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAF 445
K V I A + A+ + D +R +D LT F
Sbjct: 167 GQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGID---LTKPFEYLF 223
Query: 446 STGAW-SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG-KVGDARYPHPSHW 503
+TG S + SG+ + N ++ L R + + + R P W
Sbjct: 224 ATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESW 283
Query: 504 GKICFLSTPDGENCGLVKNLGVTGLVSTSIL--EPIFEQLFNSGMEKLADDASY-SLGGK 560
G +C + TPDGE CGL+ +L V T + I L N G+ + D A + S
Sbjct: 284 GFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPI-DGAPHRSYSEC 342
Query: 561 FKVFVDGDWIG-VCKDSLSFVSXXXXXXXXXXX---PTQVEIK------RDELQSEVRIF 610
+ V +DG +G V KD ++ P +E+ + L + +F
Sbjct: 343 YPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLF 402
Query: 611 MDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK 670
R++RP V+N+ GK EL+GT E+ A + +
Sbjct: 403 TTPCRLVRP---VQNLAL-----GKE------------ELIGTMEQIFMNVA-----IFE 437
Query: 671 DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
D E + TH EL LL + IPF++H+ + R +YQ Q Q +GFP
Sbjct: 438 D-EVFAGVT-THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM-GKQTMGFPLLTYQD 494
Query: 731 RVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHIL 766
R D ++L PQ PL R + D Y G N I+
Sbjct: 495 RSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIV 532
>UNIPROTKB|F5GZX4 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0005730 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00418797 Ensembl:ENST00000541869 ArrayExpress:F5GZX4
Bgee:F5GZX4 Uniprot:F5GZX4
Length = 1173
Score = 728 (261.3 bits), Expect = 9.2e-85, Sum P(3) = 9.2e-85
Identities = 192/502 (38%), Positives = 257/502 (51%)
Query: 681 THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
TH EL LL + IPF++H+ + R +YQ Q Q +GFP R D ++L
Sbjct: 695 THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQ 753
Query: 741 YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
PQ PL R + D Y P G NAIVAV + GY+ ED++++N+AS
Sbjct: 754 TPQSPLVRPSMYDYYDMDNY--------PI---GTNAIVAVISYTGYDMEDAMIVNKASW 802
Query: 801 ERGMFRSEHIRSYKAE-VDNKEMQVKRRSSDDMVNFGKIQSKIGRV-DSLDDDGFPFIGA 858
ERG H YK+E +D E K + D + FG I+ RV LDDDG PFIGA
Sbjct: 803 ERGF---AHGSVYKSEFIDLSE---KIKQGDSSLVFG-IKPGDPRVLQKLDDDGLPFIGA 855
Query: 859 NLQSGDIVIGKY-ADSGADHSIKLKHTERGMVQKVVLSSNDDGKN-FSVV--SLRQVRSP 914
LQ GD ++G + K E +V + + SND G F V ++R R+P
Sbjct: 856 KLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNP 915
Query: 915 CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXX 974
+GDKF+S HGQKG+L L E+ PFT G+VPDI+ NPH FPSR T G
Sbjct: 916 TIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKS 975
Query: 975 XXXXXXXXCSGLKRYATPFA----TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSL 1030
GL ATPF +++ E L AG++ +GTERLY G +G + +
Sbjct: 976 AALH------GLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEAD 1029
Query: 1031 IFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAA 1090
IFIG +YQRL HM DK + R TG +T QP+ R GGI+FGEMERD L+AHG +
Sbjct: 1030 IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTS 1089
Query: 1091 ANLHERLFTLSDSYQMHICRKCKNVANVI--QXXXXXXXXXXXPY-CRICDSGDDIVKAN 1147
LH+RLF SD H+C KC ++ + + + Y C +C D I +
Sbjct: 1090 FLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVS 1149
Query: 1148 VPYGAKLLCQELFSMGITLKFD 1169
VPY + EL +M I +K D
Sbjct: 1150 VPYVFRYFVAELAAMNIKVKLD 1171
Score = 152 (58.6 bits), Expect = 9.2e-85, Sum P(3) = 9.2e-85
Identities = 112/458 (24%), Positives = 171/458 (37%)
Query: 333 FPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXX 392
+P ++ E N + L +K L M + L G DN D N+
Sbjct: 356 YPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTP 415
Query: 393 XXXXXXXXK-------VHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAF 445
K V I A + A+ + D +R +D LT F
Sbjct: 416 GQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGID---LTKPFEYLF 472
Query: 446 STGAW-SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG-KVGDARYPHPSHW 503
+TG S + SG+ + N ++ L R + + + R P W
Sbjct: 473 ATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESW 532
Query: 504 GKICFLSTPDGENCGLVKNLGVTGLVSTSIL--EPIFEQLFNSGMEKLADDASY-SLGGK 560
G +C + TPDGE CGL+ +L V T + I L N G+ + D A + S
Sbjct: 533 GFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPI-DGAPHRSYSEC 591
Query: 561 FKVFVDGDWIG-VCKDSLSFVSXXXXXXXXXXX---PTQVEIK------RDELQSEVRIF 610
+ V +DG +G V KD ++ P +E+ + L + +F
Sbjct: 592 YPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLF 651
Query: 611 MDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK 670
R++RP V+N+ GK EL+GT E+ A + +
Sbjct: 652 TTPCRLVRP---VQNLAL-----GKE------------ELIGTMEQIFMNVA-----IFE 686
Query: 671 DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
D E + TH EL LL + IPF++H+ + R +YQ Q Q +GFP
Sbjct: 687 D-EVFAGVT-THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM-GKQTMGFPLLTYQD 743
Query: 731 RVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHIL 766
R D ++L PQ PL R + D Y G N I+
Sbjct: 744 RSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIV 781
Score = 82 (33.9 bits), Expect = 9.2e-85, Sum P(3) = 9.2e-85
Identities = 59/241 (24%), Positives = 96/241 (39%)
Query: 166 IGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF---VAQEQ---ICL 213
+G +P+MVKS LC ++ +E + + GGYFII G EKV + + I +
Sbjct: 172 LGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAM 231
Query: 214 KR-LWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTE--IPIWI 270
R W + G+T Y R V+M+ ++ G +L+ + +P+
Sbjct: 232 IRPKWKTRGPGYT-QYGVSMHCVREEHSAVNMN-LHYLENGTVMLNFIYRKELFFLPLGF 289
Query: 271 LFFALGVSSDKEIVNLIDFTCEDCSIL-NILFASIHDA-DNKCDEFRKGRNALK--YVDK 326
AL SD +I + ED S L N + + + C ++ N L + K
Sbjct: 290 ALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGECFRVK 349
Query: 327 LIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRN 386
L +P ++ E N + L +K L M + L G DN D N
Sbjct: 350 LNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVN 409
Query: 387 K 387
+
Sbjct: 410 Q 410
>UNIPROTKB|F1SUA2 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677 GO:GO:0009790
GO:GO:0009303 GO:GO:0007566 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:CU856034 Ensembl:ENSSSCT00000008871
Uniprot:F1SUA2
Length = 1172
Score = 731 (262.4 bits), Expect = 1.3e-84, Sum P(3) = 1.3e-84
Identities = 190/502 (37%), Positives = 258/502 (51%)
Query: 681 THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
TH EL LL + IPF++H+ + R +YQ Q Q +GFP R D ++L
Sbjct: 694 THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM-GKQTMGFPLLTFKDRSDNKLYRLQ 752
Query: 741 YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
PQ PL R + D Y P G NAIVAV + GY+ ED++++N+AS
Sbjct: 753 TPQSPLVRPYMYDYYDMDNY--------PI---GTNAIVAVISYTGYDMEDAMILNKASW 801
Query: 801 ERGMFRSEHIRSYKAE-VDNKEMQVKRRSSDDMVNFGKIQSKIGRV-DSLDDDGFPFIGA 858
ERG H YK+E +D E K + DD + FG ++ RV LDDDG PF+GA
Sbjct: 802 ERGF---AHGSVYKSEFIDLSE---KIKQGDDSLVFG-VRPGDPRVAQKLDDDGLPFVGA 854
Query: 859 NLQSGDIVIGKY-ADSGADHSIKLKHTERGMVQKVVLSSNDDGKN-FSVV--SLRQVRSP 914
LQ GD ++G + K E +V + + ND G F V ++R R+P
Sbjct: 855 QLQYGDPYYSYLNLNTGESFVVYYKSKENCIVDNIKVCGNDTGSGRFKCVCITMRVPRNP 914
Query: 915 CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXX 974
+GDKF+S HGQKG+L L E+ PFT G+VPDI+ NPH FPSR T G
Sbjct: 915 TIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKS 974
Query: 975 XXXXXXXXCSGLKRYATPFA----TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSL 1030
GL ATPF +++ E L AG++ +GTERLY G +G + +
Sbjct: 975 AALH------GLCHDATPFIFSEENSALEYFGEMLKAAGYNYYGTERLYSGISGLELEAD 1028
Query: 1031 IFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAA 1090
IFIG +YQRL HM DK + R TG +T QP+ R GGI+FGEMERD L+AHG +
Sbjct: 1029 IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTS 1088
Query: 1091 ANLHERLFTLSDSYQMHICRKCKNVANVI--QXXXXXXXXXXXPY-CRICDSGDDIVKAN 1147
LH+RLF SD H+C KC ++ + + + Y C +C+ D I +
Sbjct: 1089 FLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYSCSLCNRSDTIDTVS 1148
Query: 1148 VPYGAKLLCQELFSMGITLKFD 1169
VPY + EL +M I +K D
Sbjct: 1149 VPYVFRYFVAELAAMNIKVKLD 1170
Score = 153 (58.9 bits), Expect = 1.3e-84, Sum P(3) = 1.3e-84
Identities = 143/611 (23%), Positives = 229/611 (37%)
Query: 193 GGYFIIKGAEKVF---VAQEQ---ICLKR-LWVSNSMGWTVAYKSENKRNRLIVRLVDMS 245
GGYFII G EKV + + I + R W S G+T R V+M+
Sbjct: 203 GGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKSRGPGYTQYVGVSMHCVREEHSAVNMN 262
Query: 246 KFEDIKGGEKVLSVYFLSTE--IPIWILFFALGVSSDKEIVNLIDFTCEDCSIL-NILFA 302
++ G +L+ + +P+ AL SD +I + ED S L N +
Sbjct: 263 -LHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQ 321
Query: 303 SIHDA-DNKCDEFRKGRNAL--KYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKAR 359
+ + C ++ N L ++ K+ +P ++ E N + L +K
Sbjct: 322 MLRIVMEEGCATQKQVLNYLGERFRVKVNLPDWYPNEQAAEFLFNECICIHLKSNTEKFY 381
Query: 360 FLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXK-------VHIAHARKRMA 412
L M + L G +N D N+ K V I A + A
Sbjct: 382 MLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKKA 441
Query: 413 KALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAW-SHPFKRTERISGIVANLGRAN 471
+ L + ++ + +D LT +TG S + SG+ + N
Sbjct: 442 QKTSVSLNTENLMKILNLGID---LTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLN 498
Query: 472 PLQTLVDLRRTRQQVQYTG-KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
++ L R + + + R P WG +C + TPDGE CGL+ +L T V
Sbjct: 499 FIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTATCEVV 558
Query: 531 TSIL--EPIFEQLFNSGMEKLADDASYSLGGK-FKVFVDGDWIGVCKDSL--SFVSXXXX 585
T + I L + G+ + D A + + + V +DG +G L S
Sbjct: 559 TQFVYTASIPALLCSLGVTPV-DSAPHRRYSECYPVLLDGVMVGWADKELAPSIADSLRH 617
Query: 586 XXXXXXX--PTQVEIK------RDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNY 637
P +E+ + L + +F R++RP V+N+G G+
Sbjct: 618 FKVLREKRIPPWMEVVLIPMTGKPSLYPGLYLFTTPCRLVRP---VQNLGL-----GRE- 668
Query: 638 TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGI 697
EL+GT E+ A + +D E + TH EL LL +
Sbjct: 669 -----------ELIGTMEQIFMNVA-----IFED-EVLAGVT-THQELFPHSLLSVIANF 710
Query: 698 IPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGK 757
IPF++H+ + R +YQ Q Q +GFP R D ++L PQ PL R + D
Sbjct: 711 IPFSDHNQSPRNMYQCQM-GKQTMGFPLLTFKDRSDNKLYRLQTPQSPLVRPYMYDYYDM 769
Query: 758 PGY--GHNHIL 766
Y G N I+
Sbjct: 770 DNYPIGTNAIV 780
Score = 76 (31.8 bits), Expect = 1.3e-84, Sum P(3) = 1.3e-84
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 166 IGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKV 204
+G +P+MVKS LC + +E + + GGYFII G EKV
Sbjct: 170 LGYVPIMVKSKLCNLYSLSPRALIEHHEEAEEMGGYFIINGIEKV 214
Score = 43 (20.2 bits), Expect = 3.1e-69, Sum P(2) = 3.1e-69
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 314 FRKGRNALKYVDKLIKGTTFPPGESTEECMNTY 346
F+ R +L VD I T P G +E +N Y
Sbjct: 104 FKDERISLTIVDAAISPPTVPKGSICKE-LNIY 135
>UNIPROTKB|E2REX8 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
EMBL:AAEX03010908 RefSeq:XP_003639648.1 Ensembl:ENSCAFT00000011494
GeneID:100856298 KEGG:cfa:100856298 Uniprot:E2REX8
Length = 1135
Score = 737 (264.5 bits), Expect = 7.8e-83, Sum P(2) = 7.8e-83
Identities = 191/501 (38%), Positives = 255/501 (50%)
Query: 681 THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
TH EL LL + IPF++H+ + R +YQ Q Q +GFP R D ++L
Sbjct: 657 THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM-GKQTMGFPLLTYQARSDNKLYRLQ 715
Query: 741 YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
PQ PL R + D Y P G NAIVAV + GY+ ED++++N+AS
Sbjct: 716 TPQSPLVRPYMYDYYDMDNY--------PI---GTNAIVAVISYTGYDMEDAMIVNKASW 764
Query: 801 ERGMFRSEHIRSYKAE-VDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGAN 859
ERG H YK+E +D E K + DD + FG + LDDDG PFIGA
Sbjct: 765 ERGF---AHGSVYKSEFIDLSE---KIKQGDDSLVFGVKPGDPRILQKLDDDGLPFIGAR 818
Query: 860 LQSGDIVIGKY-ADSGADHSIKLKHTERGMVQKVVLSSNDDGKN-FSVV--SLRQVRSPC 915
LQ GD ++G K E +V + + SND G F V ++R R+P
Sbjct: 819 LQYGDPYYSYLNLNTGESFVTYYKSKENCIVDNIKVCSNDTGNGRFKCVCITMRVPRNPT 878
Query: 916 LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXX 975
+GDKF+S HGQKG+L L E+ PFT G+VPDI+ NPH FPSR T G
Sbjct: 879 IGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSA 938
Query: 976 XXXXXXXCSGLKRYATPFA----TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
GL ATPF +++ E L AG++ +GTERLY G +G + + I
Sbjct: 939 ALH------GLCHDATPFTFSEENSALEYFGELLKAAGYNFYGTERLYSGISGIELEADI 992
Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
FIG +YQRL HM DK + R TG +T QP+ R GGI+FGEMERD L+AHG +
Sbjct: 993 FIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSF 1052
Query: 1092 NLHERLFTLSDSYQMHICRKCKNVANVI--QXXXXXXXXXXXPY-CRICDSGDDIVKANV 1148
LH+RLF SD H+C KC ++ + + + Y C +CD D I +V
Sbjct: 1053 LLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCDRSDTIDTVSV 1112
Query: 1149 PYGAKLLCQELFSMGITLKFD 1169
PY + EL +M I +K D
Sbjct: 1113 PYVFRYFVAELAAMNIKVKLD 1133
Score = 163 (62.4 bits), Expect = 7.8e-83, Sum P(2) = 7.8e-83
Identities = 169/757 (22%), Positives = 284/757 (37%)
Query: 39 LVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSF 98
L + S+N ++ GL A + P ++ + K E S+ + P
Sbjct: 38 LTRAHVESFNYAVREGLSHAVQAI------PPFEFAFKDER----ISLTIVDAVISPPMV 87
Query: 99 FAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLS 158
GN E +++P R + TY ++ + + V + +F G YI V S
Sbjct: 88 PKGNICKELNIYPAECRGRRSTYRGKLTADISWAVNGISKGIIKQF-LG---YIPIMVKS 143
Query: 159 DETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKVF---VAQEQ---IC 212
+ N+ +P K+ + + VE + GGYFII G EKV + + I
Sbjct: 144 -KLCNL--HSLPP--KALIEHHEEVE------EMGGYFIINGIEKVIRMLIMPRRNFPIA 192
Query: 213 LKR-LWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTE--IPIW 269
+ R W + G+T Y R V+M+ ++ G +L+ + +P+
Sbjct: 193 MIRPKWKTRGPGYT-QYGVSMHCVREEHSAVNMN-LHYLENGTVMLNFIYRKELFFLPLG 250
Query: 270 ILFFALGVSSDKEIVN-LIDFTCEDCSILNILFASIHDA-DNKCDEFRKGRNAL--KYVD 325
AL SD +I LI ED N + + + C ++ N L ++
Sbjct: 251 FALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVMEEGCSTQKQVLNYLGERFRV 310
Query: 326 KLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFR 385
KL +P ++ E N + L +K L M + L G DN D
Sbjct: 311 KLSLPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLV 370
Query: 386 NKXXXXXXXXXXXXXKVH----IAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGL 441
N+ K + + + K Q+ T + + + LT
Sbjct: 371 NQEVLTPGQLFLMFLKEKMESWLVSIKIALDKRSQKTNVSINTENLMRIFNLGTDLTKPF 430
Query: 442 SRAFSTGAW-SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG-KVGDARYPH 499
+TG S + SG+ + N ++ L R + + + R
Sbjct: 431 EYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLL 490
Query: 500 PSHWGKICFLSTPDGENCGLVKNL-GVTGLVSTSILEPIFEQLFNS-GMEKLADDASYSL 557
P WG +C + TPDGE CGL+ +L V +V+ + L S G+ + D A +
Sbjct: 491 PESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQCVYTASVPTLLCSLGVTPV-DGAPHRP 549
Query: 558 GGK-FKVFVDGDWIG-VCKD---SLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMD 612
+ + V +DG +G V K+ S++ P +E+ + + ++
Sbjct: 550 YSECYPVLLDGVMVGWVDKELAPSIAESLRHFKVLKEKRIPPWMEVALIPMTGKPSLYPG 609
Query: 613 AGRILRPLLVVENMGKIKSLE-GKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKD 671
P +V +++LE GK EL+GT E+ A + +D
Sbjct: 610 LFLFTTPCRLVR---PVQNLELGKE------------ELIGTMEQIFMNIA-----IFED 649
Query: 672 IEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIR 731
E + TH EL LL + IPF++H+ + R +YQ Q Q +GFP R
Sbjct: 650 -EVLAGVT-THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM-GKQTMGFPLLTYQAR 706
Query: 732 VDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHIL 766
D ++L PQ PL R + D Y G N I+
Sbjct: 707 SDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIV 743
>UNIPROTKB|F8W898 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AC012442 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00916790 ProteinModelPortal:F8W898 SMR:F8W898
Ensembl:ENST00000409894 UCSC:uc010fko.2 ArrayExpress:F8W898
Bgee:F8W898 Uniprot:F8W898
Length = 952
Score = 728 (261.3 bits), Expect = 1.7e-77, Sum P(2) = 1.7e-77
Identities = 192/502 (38%), Positives = 257/502 (51%)
Query: 681 THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
TH EL LL + IPF++H+ + R +YQ Q Q +GFP R D ++L
Sbjct: 474 THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQ 532
Query: 741 YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
PQ PL R + D Y P G NAIVAV + GY+ ED++++N+AS
Sbjct: 533 TPQSPLVRPSMYDYYDMDNY--------PI---GTNAIVAVISYTGYDMEDAMIVNKASW 581
Query: 801 ERGMFRSEHIRSYKAE-VDNKEMQVKRRSSDDMVNFGKIQSKIGRV-DSLDDDGFPFIGA 858
ERG H YK+E +D E K + D + FG I+ RV LDDDG PFIGA
Sbjct: 582 ERGF---AHGSVYKSEFIDLSE---KIKQGDSSLVFG-IKPGDPRVLQKLDDDGLPFIGA 634
Query: 859 NLQSGDIVIGKY-ADSGADHSIKLKHTERGMVQKVVLSSNDDGKN-FSVV--SLRQVRSP 914
LQ GD ++G + K E +V + + SND G F V ++R R+P
Sbjct: 635 KLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNP 694
Query: 915 CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXX 974
+GDKF+S HGQKG+L L E+ PFT G+VPDI+ NPH FPSR T G
Sbjct: 695 TIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKS 754
Query: 975 XXXXXXXXCSGLKRYATPFA----TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSL 1030
GL ATPF +++ E L AG++ +GTERLY G +G + +
Sbjct: 755 AALH------GLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEAD 808
Query: 1031 IFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAA 1090
IFIG +YQRL HM DK + R TG +T QP+ R GGI+FGEMERD L+AHG +
Sbjct: 809 IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTS 868
Query: 1091 ANLHERLFTLSDSYQMHICRKCKNVANVI--QXXXXXXXXXXXPY-CRICDSGDDIVKAN 1147
LH+RLF SD H+C KC ++ + + + Y C +C D I +
Sbjct: 869 FLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVS 928
Query: 1148 VPYGAKLLCQELFSMGITLKFD 1169
VPY + EL +M I +K D
Sbjct: 929 VPYVFRYFVAELAAMNIKVKLD 950
Score = 82 (33.9 bits), Expect = 1.7e-77, Sum P(2) = 1.7e-77
Identities = 59/241 (24%), Positives = 96/241 (39%)
Query: 166 IGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF---VAQEQ---ICL 213
+G +P+MVKS LC ++ +E + + GGYFII G EKV + + I +
Sbjct: 134 LGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAM 193
Query: 214 KR-LWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTE--IPIWI 270
R W + G+T Y R V+M+ ++ G +L+ + +P+
Sbjct: 194 IRPKWKTRGPGYT-QYGVSMHCVREEHSAVNMN-LHYLENGTVMLNFIYRKELFFLPLGF 251
Query: 271 LFFALGVSSDKEIVNLIDFTCEDCSIL-NILFASIHDA-DNKCDEFRKGRNALK--YVDK 326
AL SD +I + ED S L N + + + C ++ N L + K
Sbjct: 252 ALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGECFRVK 311
Query: 327 LIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRN 386
L +P ++ E N + L +K L M + L G DN D N
Sbjct: 312 LNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVN 371
Query: 387 K 387
+
Sbjct: 372 Q 372
>POMBASE|SPBP23A10.07 [details] [associations]
symbol:rpa2 "DNA-directed RNA polymerase I complex
subunit Rpa2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=ISO] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=ISO] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PomBase:SPBP23A10.07 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
OMA:EVFAGVT GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222963 PIR:T50394 RefSeq:NP_595819.2 STRING:Q9P7X8
EnsemblFungi:SPBP23A10.07.1 GeneID:2541280 KEGG:spo:SPBP23A10.07
OrthoDB:EOG4W11N4 NextBio:20802391 Uniprot:Q9P7X8
Length = 1174
Score = 711 (255.3 bits), Expect = 2.5e-74, Sum P(3) = 2.5e-74
Identities = 176/470 (37%), Positives = 249/470 (52%)
Query: 681 THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
TH E + +L + + PF++ + + R +YQ Q Q +G P T R D ++L
Sbjct: 672 THVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQM-GKQTMGTPGTALRYRTDNKLYRLQ 730
Query: 741 YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
Q P+ R + + YG +H P NG NA+VAV + GY+ ED++++N+++
Sbjct: 731 TGQTPVVRPKLHNT-----YGLDHY---P---NGTNAVVAVISYTGYDMEDAMILNKSAH 779
Query: 801 ERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN-FGKIQSKIGR---VDSLDDDGFPFI 856
ERG F + YK E + ++ KRR + +V+ FG R + LD DG PFI
Sbjct: 780 ERG-FGYGTV--YKGE--SFDLSQKRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLPFI 834
Query: 857 GANLQSGDIVIGKYADSGADHSIKLKH-TERGMVQKVVLSSNDDGKNFSV---VSLRQVR 912
G L+ GD ++ Y +S + I+ H TE G V +V L ND G + V LR R
Sbjct: 835 GIKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGDSECQQIHVKLRITR 894
Query: 913 SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXX 972
SP +GDKFSS HGQKG+ + PFT G+ PDI+INPHAFPSR T G
Sbjct: 895 SPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGMFIESLAG 954
Query: 973 XXXXXXXXXXCSGLKRYATPFA----TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
C GL + +TPF + D EQL +AG++ G E +Y G TG+ ++
Sbjct: 955 KAGA------CHGLAQDSTPFIYSEQQTAADYFGEQLVKAGYNYHGNEPMYSGITGQEMK 1008
Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
+ I+IG +YQRL HM DK + R TGP+H LTRQPV RKR GGI+FGEMERD +I HG
Sbjct: 1009 ADIYIGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHG 1068
Query: 1089 AAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPY-CRIC 1137
+ + +RL SD Q +CR C ++ +++ CR C
Sbjct: 1069 TSFLMQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSASEVRCRSC 1118
Score = 83 (34.3 bits), Expect = 2.5e-74, Sum P(3) = 2.5e-74
Identities = 36/133 (27%), Positives = 63/133 (47%)
Query: 166 IGRIPVMVKSDLCWMKGVEKGDC------DFDHGGYFIIKGAEKVFVAQEQICLKRLWVS 219
+G IP+MV+S+ C ++G+ + + GGYFI+ G EK+ + I KR +
Sbjct: 137 VGMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLI--RMLILPKRNHPT 194
Query: 220 NSMGWTVAYKSEN-KRNRLIVRLV--DMSKFED----IKGGEKVLSVYFLSTE--IPIWI 270
+ + A + + + L +R V D S + + G + ++ E IP +
Sbjct: 195 AIIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTLHYLNNGVTMFRFHWRKNEYLIPSMM 254
Query: 271 LFFALGVSSDKEI 283
+ AL +SDKEI
Sbjct: 255 ILKALLETSDKEI 267
Score = 72 (30.4 bits), Expect = 2.5e-74, Sum P(3) = 2.5e-74
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 500 PSHWGKICFLSTPDGENCGLVKNL 523
P WG +C + TPDG CGL+ +L
Sbjct: 498 PEAWGFMCPVHTPDGSPCGLLNHL 521
Score = 68 (29.0 bits), Expect = 9.4e-73, Sum P(3) = 9.4e-73
Identities = 45/180 (25%), Positives = 72/180 (40%)
Query: 28 KAAVSFFNEYGLVSHQINSYNEFIKNGLQK-AFDSFGETIVEPGYDPSKKGEGEW-RYAS 85
K SF + V ++S+N GL A GE + G ++ S
Sbjct: 17 KDGTSFPDLQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAFDSITQEEGGALKFGNKIS 76
Query: 86 MRFGQVTLDKPSFFAGNGGD-EHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
R +V + KP + ++P AR + TY SR+ +K + V R S+
Sbjct: 77 FRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGGPR-QSEMR 135
Query: 145 KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKV 204
+ G I V S+ + G P ++L K E+ + + GGYFI+ G EK+
Sbjct: 136 EVGM---IPIMVRSNRCH--LEGLSP----AELIAHK--EESE---EMGGYFIVNGIEKL 181
>RGD|620822 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005736 "DNA-directed RNA polymerase
I complex" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0007566 "embryo implantation"
evidence=IEA;ISO] [GO:0009303 "rRNA transcription"
evidence=IEA;ISO;IDA] [GO:0009790 "embryo development"
evidence=IEA;ISO] [GO:0017126 "nucleologenesis" evidence=IEA;ISO]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 716 (257.1 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 185/485 (38%), Positives = 254/485 (52%)
Query: 698 IPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGK 757
IPF++H+ + R +YQ Q Q +GFP R D ++L PQ PL R C+
Sbjct: 674 IPFSDHNQSPRNMYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRP----CM-- 726
Query: 758 PGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE- 816
Y H + P G NAIVAV + GY+ ED++++N+AS ERG H YK+E
Sbjct: 727 --YDHYDMDNYPI---GTNAIVAVISYTGYDMEDAMIVNKASWERGF---AHGSVYKSEF 778
Query: 817 VDNKEMQVKRRSSDDMVNFGKIQSKIGRV-DSLDDDGFPFIGANLQSGDIVIGKY-ADSG 874
+D E K + DD + FG ++ RV LD+DG PFIGA L+ GD G ++G
Sbjct: 779 IDLSE---KFKQGDDSLVFG-VKPGDPRVMQKLDNDGLPFIGAKLEFGDPYYGYLNLNTG 834
Query: 875 ADHSIKLKHTERGMVQKVVLSSNDDGKN-FSVV--SLRQVRSPCLGDKFSSMHGQKGVLG 931
+ K E +V + + SND G F V ++R R+P +GDKF+S HGQKG+L
Sbjct: 835 EGFVVYYKSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDKFASRHGQKGILS 894
Query: 932 FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYAT 991
L E+ PFT G++PDI+ NPH FPSR T G GL AT
Sbjct: 895 RLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALH------GLCHDAT 948
Query: 992 PFA----TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
PF +++ E L AG++ +GTERLY G +G + + IFIG +YQRL HM D
Sbjct: 949 PFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSD 1008
Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
K + R TG +T QP+ R GGI+FGEMERD L+AHG + LH+RLF SD H
Sbjct: 1009 KFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAH 1068
Query: 1108 ICRKCKNVANVI--QXXXXXXXXXXXPY-CRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
+C KC ++ + + + Y C +C D I +VPY + EL +M I
Sbjct: 1069 VCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDSIDTVSVPYVFRYFVAELAAMNI 1128
Query: 1165 TLKFD 1169
+K D
Sbjct: 1129 KVKLD 1133
Score = 90 (36.7 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 76/350 (21%), Positives = 127/350 (36%)
Query: 193 GGYFIIKGAEKVF---VAQEQ---ICLKR-LWVSNSMGWTVAYKSENKRNRLIVRLVDMS 245
GGYFII G EKV + + I + R W S +G+T + R V+M+
Sbjct: 167 GGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKSRGLGYT-QFGVSIHCVREEHSAVNMN 225
Query: 246 KFEDIKGGEKVLSVYFLSTE--IPIWILFFALGVSSDKEIVN-LIDFTCEDCSILNILFA 302
++ G +L+ + +P+ AL SD +I LI ED N +
Sbjct: 226 -LHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEEDSFFKNSVSQ 284
Query: 303 SIHDA-DNKCDEFRKGRNAL--KYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKAR 359
+ + C ++ + L ++ KL +P E+ E N + L K
Sbjct: 285 MLRIVMEEGCHTQKQVLDYLGERFRVKLSLPDWYPNAEAAEFLFNQCICIHLKSNTDKFY 344
Query: 360 FLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAH----ARKRMAKAL 415
L M + L G DN D N+ K + + + + K
Sbjct: 345 LLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFLMFLKEKMENWLLSIKIALDKRA 404
Query: 416 QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAW-SHPFKRTERISGIVANLGRANPLQ 474
Q+ ++ + + LT +TG S + SG+ + N ++
Sbjct: 405 QKTNVSINNENLMKIFSMGTELTRPFEYLLATGNLRSKTGLGFMQDSGLCVVADKLNFIR 464
Query: 475 TLVDLRRTRQQVQYTG-KVGDARYPHPSHWGKICFLSTPDGENCGLVKNL 523
L R + + + R P WG +C + TPDG CGL+ +L
Sbjct: 465 YLSHFRCVHRGADFAKMRTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHL 514
Score = 84 (34.6 bits), Expect = 6.2e-72, Sum P(2) = 6.2e-72
Identities = 59/241 (24%), Positives = 95/241 (39%)
Query: 166 IGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF---VAQEQ---ICL 213
+G +P+MVKS LC + +E + + GGYFII G EKV + + I +
Sbjct: 134 LGXVPIMVKSKLCNLYNLPPQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAM 193
Query: 214 KR-LWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTE--IPIWI 270
R W S +G+T + R V+M+ ++ G +L+ + +P+
Sbjct: 194 IRPKWKSRGLGYT-QFGVSIHCVREEHSAVNMN-LHYVENGTVMLNFIYRKELFFLPLGF 251
Query: 271 LFFALGVSSDKEIVN-LIDFTCEDCSILNILFASIHDA-DNKCDEFRKGRNAL--KYVDK 326
AL SD +I LI ED N + + + C ++ + L ++ K
Sbjct: 252 ALKALVSFSDYQIFQELIKGKEEDSFFKNSVSQMLRIVMEEGCHTQKQVLDYLGERFRVK 311
Query: 327 LIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRN 386
L +P E+ E N + L K L M + L G DN D N
Sbjct: 312 LSLPDWYPNAEAAEFLFNQCICIHLKSNTDKFYLLCLMTRKLFALARGECMEDNPDSLVN 371
Query: 387 K 387
+
Sbjct: 372 Q 372
>UNIPROTKB|O54888 [details] [associations]
symbol:Polr1b "DNA-directed RNA polymerase I subunit RPA2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 716 (257.1 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 185/485 (38%), Positives = 254/485 (52%)
Query: 698 IPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGK 757
IPF++H+ + R +YQ Q Q +GFP R D ++L PQ PL R C+
Sbjct: 674 IPFSDHNQSPRNMYQCQM-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRP----CM-- 726
Query: 758 PGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE- 816
Y H + P G NAIVAV + GY+ ED++++N+AS ERG H YK+E
Sbjct: 727 --YDHYDMDNYPI---GTNAIVAVISYTGYDMEDAMIVNKASWERGF---AHGSVYKSEF 778
Query: 817 VDNKEMQVKRRSSDDMVNFGKIQSKIGRV-DSLDDDGFPFIGANLQSGDIVIGKY-ADSG 874
+D E K + DD + FG ++ RV LD+DG PFIGA L+ GD G ++G
Sbjct: 779 IDLSE---KFKQGDDSLVFG-VKPGDPRVMQKLDNDGLPFIGAKLEFGDPYYGYLNLNTG 834
Query: 875 ADHSIKLKHTERGMVQKVVLSSNDDGKN-FSVV--SLRQVRSPCLGDKFSSMHGQKGVLG 931
+ K E +V + + SND G F V ++R R+P +GDKF+S HGQKG+L
Sbjct: 835 EGFVVYYKSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDKFASRHGQKGILS 894
Query: 932 FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYAT 991
L E+ PFT G++PDI+ NPH FPSR T G GL AT
Sbjct: 895 RLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALH------GLCHDAT 948
Query: 992 PFA----TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
PF +++ E L AG++ +GTERLY G +G + + IFIG +YQRL HM D
Sbjct: 949 PFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSD 1008
Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
K + R TG +T QP+ R GGI+FGEMERD L+AHG + LH+RLF SD H
Sbjct: 1009 KFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAH 1068
Query: 1108 ICRKCKNVANVI--QXXXXXXXXXXXPY-CRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
+C KC ++ + + + Y C +C D I +VPY + EL +M I
Sbjct: 1069 VCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDSIDTVSVPYVFRYFVAELAAMNI 1128
Query: 1165 TLKFD 1169
+K D
Sbjct: 1129 KVKLD 1133
Score = 90 (36.7 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 76/350 (21%), Positives = 127/350 (36%)
Query: 193 GGYFIIKGAEKVF---VAQEQ---ICLKR-LWVSNSMGWTVAYKSENKRNRLIVRLVDMS 245
GGYFII G EKV + + I + R W S +G+T + R V+M+
Sbjct: 167 GGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKSRGLGYT-QFGVSIHCVREEHSAVNMN 225
Query: 246 KFEDIKGGEKVLSVYFLSTE--IPIWILFFALGVSSDKEIVN-LIDFTCEDCSILNILFA 302
++ G +L+ + +P+ AL SD +I LI ED N +
Sbjct: 226 -LHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEEDSFFKNSVSQ 284
Query: 303 SIHDA-DNKCDEFRKGRNAL--KYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKAR 359
+ + C ++ + L ++ KL +P E+ E N + L K
Sbjct: 285 MLRIVMEEGCHTQKQVLDYLGERFRVKLSLPDWYPNAEAAEFLFNQCICIHLKSNTDKFY 344
Query: 360 FLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAH----ARKRMAKAL 415
L M + L G DN D N+ K + + + + K
Sbjct: 345 LLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFLMFLKEKMENWLLSIKIALDKRA 404
Query: 416 QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAW-SHPFKRTERISGIVANLGRANPLQ 474
Q+ ++ + + LT +TG S + SG+ + N ++
Sbjct: 405 QKTNVSINNENLMKIFSMGTELTRPFEYLLATGNLRSKTGLGFMQDSGLCVVADKLNFIR 464
Query: 475 TLVDLRRTRQQVQYTG-KVGDARYPHPSHWGKICFLSTPDGENCGLVKNL 523
L R + + + R P WG +C + TPDG CGL+ +L
Sbjct: 465 YLSHFRCVHRGADFAKMRTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHL 514
Score = 84 (34.6 bits), Expect = 6.2e-72, Sum P(2) = 6.2e-72
Identities = 59/241 (24%), Positives = 95/241 (39%)
Query: 166 IGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF---VAQEQ---ICL 213
+G +P+MVKS LC + +E + + GGYFII G EKV + + I +
Sbjct: 134 LGXVPIMVKSKLCNLYNLPPQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAM 193
Query: 214 KR-LWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTE--IPIWI 270
R W S +G+T + R V+M+ ++ G +L+ + +P+
Sbjct: 194 IRPKWKSRGLGYT-QFGVSIHCVREEHSAVNMN-LHYVENGTVMLNFIYRKELFFLPLGF 251
Query: 271 LFFALGVSSDKEIVN-LIDFTCEDCSILNILFASIHDA-DNKCDEFRKGRNAL--KYVDK 326
AL SD +I LI ED N + + + C ++ + L ++ K
Sbjct: 252 ALKALVSFSDYQIFQELIKGKEEDSFFKNSVSQMLRIVMEEGCHTQKQVLDYLGERFRVK 311
Query: 327 LIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRN 386
L +P E+ E N + L K L M + L G DN D N
Sbjct: 312 LSLPDWYPNAEAAEFLFNQCICIHLKSNTDKFYLLCLMTRKLFALARGECMEDNPDSLVN 371
Query: 387 K 387
+
Sbjct: 372 Q 372
>DICTYBASE|DDB_G0293560 [details] [associations]
symbol:rpa2 "RNA polymerase I, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 dictyBase:DDB_G0293560
PANTHER:PTHR20856 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 EMBL:AAFI02000218 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 RefSeq:XP_629008.1 HSSP:P08518 STRING:Q54BM1
PRIDE:Q54BM1 EnsemblProtists:DDB0216278 GeneID:8629292
KEGG:ddi:DDB_G0293560 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
ProtClustDB:CLSZ2728683 GO:GO:0032549 Gene3D:2.40.270.10
Uniprot:Q54BM1
Length = 1130
Score = 635 (228.6 bits), Expect = 1.6e-72, Sum P(2) = 1.6e-72
Identities = 165/500 (33%), Positives = 249/500 (49%)
Query: 681 THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
TH E + + L + PF++++ + R +YQ Q + Q +G P + R D +++
Sbjct: 651 THIETSPTAMFSLLANLTPFSDYNQSPRNMYQCQM-AKQTMGTPLHSYPFRTDNKLYKVQ 709
Query: 741 YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
Q+P+ T Y H G NA++AV + GY+ ED++++N+++
Sbjct: 710 NVQKPIVHTKNQFKFRCNDYPH-----------GCNAVIAVISNTGYDMEDAMIINKSAY 758
Query: 801 ERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDS-LDDDGFPFIGAN 859
ERG H YK E + + + R FG+ + + +D +D DG PF+G
Sbjct: 759 ERGF---GHGSVYKNEYIDLDQGLSRFEQKKTF-FGRPNTVVDELDKFIDTDGLPFVGRL 814
Query: 860 LQSGDIVIGKYADSGADHSIK-LKHTERGMVQ--KVVLSSN----DDGK-NFSVVSLRQV 911
++ G+ S K K E ++ +++ N D K N V LR
Sbjct: 815 IKPGEPYYTYIRPSDGRQVTKDYKGKEEAYIEDVRIIFGPNGATRDPSKINNICVKLRFN 874
Query: 912 RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXX 971
R+P +GDKFSS HGQKGVL L + N PFT G+ PD++INP+AFPSR T G
Sbjct: 875 RNPVIGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSRMTIGMLVEILA 934
Query: 972 XXXXXXXXXXXCSGLKRYATPFA----TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMV 1027
G + AT F ++D EQL +AGF+++G E++Y G TG+
Sbjct: 935 GKAGAIH------GKFQDATAFQFDENNTAIDFFGEQLAKAGFNRFGNEQMYSGTTGKEF 988
Query: 1028 RSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 1087
IF G +YQRL HM +DK + R G V+ LTRQP+ RK GGI+FGEMERD L+AH
Sbjct: 989 ECEIFFGVCYYQRLRHMVKDKYQVRALGKVNALTRQPIKGRKVGGGIRFGEMERDSLLAH 1048
Query: 1088 GAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKAN 1147
GA+ L++RL SD ++ +C+ C + + C+ C S D I +
Sbjct: 1049 GASFCLNDRLMKSSDFAKIKVCKLCGSTLTIYSKKDYSNQTVSE--CKSCKSSDSIATIS 1106
Query: 1148 VPYGAKLLCQELFSMGITLK 1167
+PY L EL ++ IT+K
Sbjct: 1107 IPYVFTYLVAELAAVNITMK 1126
Score = 179 (68.1 bits), Expect = 1.6e-72, Sum P(2) = 1.6e-72
Identities = 90/369 (24%), Positives = 154/369 (41%)
Query: 48 NEFIKNGLQKAFDSF------GETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAG 101
+E +K+ +Q DSF G +V +P +Y +RF + L +P+
Sbjct: 2 SEELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFEHNSTQY-KIRFTDLKLSRPT--RN 58
Query: 102 NGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE-QYIQKEVLSDE 160
E ++P +R TY++ K + +Y + D+ G E Y ++E
Sbjct: 59 IVEKEIKLYPNESRETGTTYNAPFKGAIG--LYEVNEM--DEMDDGTEVDYNKQE--PTH 112
Query: 161 TTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF------VAQ 208
T + +GR+P+MVKS C + G +E + + + GGYFI+ G EKV A
Sbjct: 113 TFEVDLGRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKAN 172
Query: 209 EQICLKR-LWVSNSMGWTVAYKSENKRNRLIVRLV--DMSKFED----IKGGEKVLSVYF 261
+ L R W + G+T +N + +R V D S + I G+ L +
Sbjct: 173 HPVALHRKAWTNRGPGYT--------KNGITIRCVRPDRSSITNNLHYINDGQTTLRFLY 224
Query: 262 LSTE--IPIWILFFALGVSSDKEIV-NLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
E +P +L AL +++KEI N++ E+ + + + S+ + K +
Sbjct: 225 RRQEFFLPATLLLKALKDTTEKEIYENIVQGDNENTFLTDRVELSLRE--QKINNINTQE 282
Query: 319 NALKYVDKLIKGTT-FPPGESTEEC----MNTYLFPSLHGTKQKARFLGYMVKCLLQAYS 373
L Y+ + T FPP S + +N ++F L K L M++ L
Sbjct: 283 EVLDYIGSRFRARTQFPPSFSNIKIGRWFINQFVFVHLPNYNDKYNLLILMIQKLYAMVG 342
Query: 374 GRRKCDNRD 382
G+ DN D
Sbjct: 343 GKCGTDNID 351
Score = 129 (50.5 bits), Expect = 3.1e-67, Sum P(2) = 3.1e-67
Identities = 66/297 (22%), Positives = 118/297 (39%)
Query: 250 IKGGEKVLSVYFLSTE--IPIWILFFALGVSSDKEIV-NLIDFTCEDCSILNILFASIHD 306
I G+ L + E +P +L AL +++KEI N++ E+ + + + S+ +
Sbjct: 213 INDGQTTLRFLYRRQEFFLPATLLLKALKDTTEKEIYENIVQGDNENTFLTDRVELSLRE 272
Query: 307 ADNKCDEFRKGRNALKYVDKLIKGTT-FPPGESTEEC----MNTYLFPSLHGTKQKARFL 361
K + L Y+ + T FPP S + +N ++F L K L
Sbjct: 273 --QKINNINTQEEVLDYIGSRFRARTQFPPSFSNIKIGRWFINQFVFVHLPNYNDKYNLL 330
Query: 362 GYMVKCLLQAYSGRRKCDNRDD--FRNKXXXXXXXXXXXXXKV--HIAHARKRMAKALQ- 416
M++ L G+ DN D F+ K+ ++ + + K+ +
Sbjct: 331 ILMIQKLYAMVGGKCGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFED 390
Query: 417 RDLYGDRTVRPIEYYLDASI-LTNGLSRAFSTGAW-SHPFKRTERISGIVANLGRANPLQ 474
+ GD+ ++ LD + + + S +TG S ++ SG + N L+
Sbjct: 391 KKKSGDKLPDALKKVLDKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLR 450
Query: 475 TLVDLRRTRQQVQY-TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
+ R + + T K R P WG C + TPDG CGL+ +L LV+
Sbjct: 451 FISHFRSIHRGAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVT 507
>MGI|MGI:108014 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IMP]
[GO:0009303 "rRNA transcription" evidence=ISO;IMP] [GO:0009790
"embryo development" evidence=IMP] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0017126 "nucleologenesis" evidence=IMP]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] Reactome:REACT_78136
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 MGI:MGI:108014 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
EMBL:CH466519 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
GO:GO:0005736 GO:GO:0003899 CleanEx:MM_RPA2 Reactome:REACT_86751
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 EMBL:U58280 EMBL:AK143501 EMBL:AK144616
EMBL:AL833780 EMBL:BX000699 IPI:IPI00112769 PIR:T42723
RefSeq:NP_033112.2 UniGene:Mm.259078 ProteinModelPortal:P70700
STRING:P70700 PhosphoSite:P70700 PaxDb:P70700 PRIDE:P70700
Ensembl:ENSMUST00000103205 GeneID:20017 KEGG:mmu:20017
HOGENOM:HOG000222963 InParanoid:Q3UMX7 NextBio:297521 Bgee:P70700
Genevestigator:P70700 GermOnline:ENSMUSG00000027395 Uniprot:P70700
Length = 1135
Score = 712 (255.7 bits), Expect = 2.1e-72, Sum P(2) = 2.1e-72
Identities = 187/502 (37%), Positives = 258/502 (51%)
Query: 681 THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
TH EL LL + IPF++H+ + R +YQ Q Q +GFP R D ++L
Sbjct: 657 THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM-GKQTMGFPLLTYQNRSDNKLYRLQ 715
Query: 741 YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
PQ PL R + D Y P G NAIVAV + GY+ ED++++N+AS
Sbjct: 716 TPQSPLVRPCMYDFYDMDNY--------PI---GTNAIVAVISYTGYDMEDAMIVNKASW 764
Query: 801 ERGMFRSEHIRSYKAE-VDNKEMQVKRRSSDDMVNFGKIQSKIGRV-DSLDDDGFPFIGA 858
ERG H YK+E +D E K + +D + FG ++ RV LDDDG PFIGA
Sbjct: 765 ERGF---AHGSVYKSEFIDLSE---KFKQGEDNLVFG-VKPGDPRVMQKLDDDGLPFIGA 817
Query: 859 NLQSGDIVIGKY-ADSGADHSIKLKHTERGMVQKVVLSSNDDGKN-FSVV--SLRQVRSP 914
L+ GD ++G + K E +V + + SND G F + ++R R+P
Sbjct: 818 KLEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKFKCICITVRIPRNP 877
Query: 915 CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXX 974
+GDKF+S HGQKG+L L E+ PFT G++PDI+ NPH FPSR T G
Sbjct: 878 TIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKS 937
Query: 975 XXXXXXXXCSGLKRYATPFA----TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSL 1030
GL ATPF +++ E L AG++ +GTERLY G +G + +
Sbjct: 938 AALH------GLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEAD 991
Query: 1031 IFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAA 1090
IFIG +YQRL HM DK + R TG +T QP+ R GGI+FGEMERD L+AHG +
Sbjct: 992 IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTS 1051
Query: 1091 ANLHERLFTLSDSYQMHICRKCKNVANVI--QXXXXXXXXXXXPY-CRICDSGDDIVKAN 1147
LH+RLF SD H+C +C ++ + + + Y C +C D I +
Sbjct: 1052 FLLHDRLFNCSDRSVAHMCVECGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDTIDTVS 1111
Query: 1148 VPYGAKLLCQELFSMGITLKFD 1169
VPY + EL +M I +K D
Sbjct: 1112 VPYVFRYFVAELAAMNIKVKLD 1133
Score = 135 (52.6 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 93/355 (26%), Positives = 136/355 (38%)
Query: 421 GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
G RP EY +L G R+ TG F + SG+ + N L+ L R
Sbjct: 423 GTELTRPFEY-----LLATGNLRS-KTGLG---FLQD---SGLCVVADKLNFLRYLSHFR 470
Query: 481 RTRQQVQYTG-KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL--EPI 537
+ + + R P WG +C + TPDG CGL+ +L V T + I
Sbjct: 471 CVHRGAAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASI 530
Query: 538 FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIG-VCKDSLSFVSXXXXXXXXXXXPTQV 596
L G+ + + V +DG +G V KD V+ +
Sbjct: 531 PALLCGLGVTPVDTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKV------L 584
Query: 597 EIKRDELQSEVRIFMDAGR-ILRP--LLVVENMGKIKSLEGKNYTFQALLDHGIIELVGT 653
KR EV + G+ L P L ++ ++ L+ G EL+GT
Sbjct: 585 REKRIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQN--------LELGREELIGT 636
Query: 654 EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
E+ A + +D E I TH EL LL + IPF++H+ + R +YQ
Sbjct: 637 MEQLFMNVA-----IFED-EVFGGIS-THQELFPHSLLSVIANFIPFSDHNQSPRNMYQC 689
Query: 714 QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHIL 766
Q Q +GFP R D ++L PQ PL R + D Y G N I+
Sbjct: 690 QM-GKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIV 743
Score = 93 (37.8 bits), Expect = 2.1e-72, Sum P(2) = 2.1e-72
Identities = 61/241 (25%), Positives = 96/241 (39%)
Query: 166 IGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF----VAQEQ--ICL 213
+G +P+MVKS LC + +E + + GGYFII G EKV V + I +
Sbjct: 134 LGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAM 193
Query: 214 KR-LWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTE--IPIWI 270
R W S +G+T + + R V+M+ ++ G +L+ + +P+
Sbjct: 194 VRPKWKSRGLGYT-QFGVSMRCVREEHSAVNMN-LHYVENGTVMLNFIYRKELFFLPLGF 251
Query: 271 LFFALGVSSDKEIVN-LIDFTCEDCSILNILFASIHDA-DNKCDEFRKGRNALK--YVDK 326
AL SD +I LI ED N + + + C ++ N L + K
Sbjct: 252 ALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQVLNYLGECFRVK 311
Query: 327 LIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRN 386
L +P E+ E +N + L K L M + L G DN D N
Sbjct: 312 LSLPDWYPNVEAAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDDNPDSLVN 371
Query: 387 K 387
+
Sbjct: 372 Q 372
>UNIPROTKB|A6QLS0 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677
GO:GO:0009790 GO:GO:0009303 GO:GO:0007566 GO:GO:0005736
GO:GO:0003899 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 HOGENOM:HOG000222963 EMBL:DAAA02031075
EMBL:BC148064 IPI:IPI00708666 RefSeq:NP_001093762.1
UniGene:Bt.13051 STRING:A6QLS0 Ensembl:ENSBTAT00000018830
GeneID:282342 KEGG:bta:282342 InParanoid:A6QLS0 NextBio:20806137
Uniprot:A6QLS0
Length = 1135
Score = 718 (257.8 bits), Expect = 4.5e-72, Sum P(2) = 4.5e-72
Identities = 187/501 (37%), Positives = 259/501 (51%)
Query: 681 THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
TH EL LL + IPF++H+ + R +YQ Q Q +GFP R D ++L
Sbjct: 657 THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM-GKQTMGFPLLTFQDRSDNKLYRLQ 715
Query: 741 YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
PQ PL R + D Y P G NAIVAV + GY+ ED++++N+AS
Sbjct: 716 TPQSPLVRPYMYDYYDMDNY--------PI---GTNAIVAVISYTGYDMEDAMIVNKASW 764
Query: 801 ERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRV-DSLDDDGFPFIGAN 859
ERG H YK+E + ++K+ DD + FG ++ RV LD+DG PFIGA
Sbjct: 765 ERGF---AHGSVYKSEFIDLSERIKQ--GDDSLVFG-VKPGDPRVLQKLDNDGLPFIGAQ 818
Query: 860 LQSGDIVIGKY-ADSGADHSIKLKHTERGMVQKVVLSSNDDGKN-FSVV--SLRQVRSPC 915
L+ GD ++G + K E +V + + SND G F V ++R R+P
Sbjct: 819 LKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGTGKFKCVCITMRVPRNPT 878
Query: 916 LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXX 975
+GDKF+S HGQKG+L L E+ PFT G+VPDI+ NPH FPSR T G
Sbjct: 879 IGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSA 938
Query: 976 XXXXXXXCSGLKRYATPFA----TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
GL ATPF +++ E L AG++ +GTERLY G +G + + I
Sbjct: 939 ALH------GLCHDATPFIFSEENSALEYFGEMLKAAGYNYYGTERLYSGISGLELEADI 992
Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
FIG +YQRL HM DK + R TG +T QP+ R GGI+FGEMERD L+AHG +
Sbjct: 993 FIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSF 1052
Query: 1092 NLHERLFTLSDSYQMHICRKCKNVANVI--QXXXXXXXXXXXPY-CRICDSGDDIVKANV 1148
LH+RLF SD H+C KC ++ + + + Y C +C+ D I ++
Sbjct: 1053 LLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSALRNRKYICALCNRSDTIDTISL 1112
Query: 1149 PYGAKLLCQELFSMGITLKFD 1169
PY + EL +M I +K D
Sbjct: 1113 PYVFRYFVAELAAMNIKVKLD 1133
Score = 143 (55.4 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 71/276 (25%), Positives = 112/276 (40%)
Query: 500 PSHWGKICFLSTPDGENCGLVKNL-GVTGLVSTSILEPIFEQLF-NSGMEKLADDASYSL 557
P WG +C + TPDGE CGL+ +L + +V+ S+ L N G+ +
Sbjct: 491 PESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQSVYTASIPALLCNLGVTPVDGTPHRPY 550
Query: 558 GGKFKVFVDGDWIGVC-KDSLSFVSXXXXXXXXXXX---PTQVEIKRDELQSEVRIFMDA 613
+ V +DG IG K+ ++ P +E+ + + ++
Sbjct: 551 SECYPVLLDGVMIGWADKEIAPGIADSLRHFKVLREKRIPPWMEVALIPMTGKPSLYPGL 610
Query: 614 GRILRPLLVVENMGKIKSLE-GKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDI 672
P +V +++LE GK EL+GT E+ A + +D
Sbjct: 611 YLFTTPCRLVR---PVQNLELGKE------------ELIGTMEQIFMNVA-----IFED- 649
Query: 673 EDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRV 732
E + TH EL LL + IPF++H+ + R +YQ Q Q +GFP R
Sbjct: 650 EVLAGVT-THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM-GKQTMGFPLLTFQDRS 707
Query: 733 DTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHIL 766
D ++L PQ PL R + D Y G N I+
Sbjct: 708 DNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIV 743
Score = 83 (34.3 bits), Expect = 4.5e-72, Sum P(2) = 4.5e-72
Identities = 58/241 (24%), Positives = 95/241 (39%)
Query: 166 IGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF---VAQEQ---ICL 213
+G +P+MVKS LC + +E + + GGYFII G EKV + + I +
Sbjct: 134 LGYVPIMVKSKLCNLYNLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAM 193
Query: 214 KR-LWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTE--IPIWI 270
R W S G+T Y R V+M+ ++ G +L+ + +P+
Sbjct: 194 VRPKWKSRGPGYT-QYGVSMHCVREEHSAVNMN-LHYLENGTVMLNFIYRKELFFLPLGF 251
Query: 271 LFFALGVSSDKEIVN-LIDFTCEDCSILNILFASIHDA-DNKCDEFRKGRNAL--KYVDK 326
AL SD +I LI +D N + + + C ++ N L ++ K
Sbjct: 252 ALKALVSFSDYQIFQELIKGKEDDSFFRNSVSQMLRIVMEEGCSTQKQVLNYLGERFRVK 311
Query: 327 LIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRN 386
L +P ++ E N + L +K L M + L G +N D N
Sbjct: 312 LSLPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEENPDSLMN 371
Query: 387 K 387
+
Sbjct: 372 Q 372
Score = 40 (19.1 bits), Expect = 1.5e-67, Sum P(2) = 1.5e-67
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 314 FRKGRNALKYVDKLIKGTTFPPGESTEECMNTY 346
F+ R L VD +I P G +E +N Y
Sbjct: 68 FKDERICLTIVDAVISPPAVPKGSICKE-LNVY 99
>ZFIN|ZDB-GENE-040426-1598 [details] [associations]
symbol:polr1b "polymerase (RNA) I polypeptide B"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
ZFIN:ZDB-GENE-040426-1598 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
EMBL:BC097040 IPI:IPI00859868 RefSeq:NP_956812.2 UniGene:Dr.117892
STRING:Q4V967 DNASU:325603 GeneID:325603 KEGG:dre:325603
InParanoid:Q4V967 NextBio:20809377 ArrayExpress:Q4V967
Uniprot:Q4V967
Length = 1132
Score = 714 (256.4 bits), Expect = 1.0e-71, Sum P(2) = 1.0e-71
Identities = 184/503 (36%), Positives = 255/503 (50%)
Query: 681 THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
TH EL +L + IPF++H+ + R +YQ Q S Q +GFP + R D ++L
Sbjct: 655 THQELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQM-SKQTMGFPLHSYQYRSDNKLYRLQ 713
Query: 741 YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
PQ PL R + Y H + P G NAIVAV + GY+ ED++++N++S
Sbjct: 714 TPQSPLVRPAM--------YDHYDVDNYPI---GTNAIVAVISYTGYDMEDAMIVNKSSW 762
Query: 801 ERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANL 860
ERG H YK E+ + +VK DD + FG + LD DG PFIG+ L
Sbjct: 763 ERGF---AHGSVYKTEIIDLSEKVK---GDDSIVFGVKPGDPKVMGKLDADGLPFIGSVL 816
Query: 861 QSGDIVIGKYA-DSGADHSIKLKHTERGMVQKVVLSSNDDG----KNFSVVSLRQVRSPC 915
+ GD G + ++G H K+ E +V + + SN+ G K V S R R+P
Sbjct: 817 KYGDPFYGYISLNTGQSHVYFYKYQESCVVDNIKVCSNETGTGRFKRICVTS-RVPRNPT 875
Query: 916 LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXX 975
+GDKF+S HGQKG+L L E+ PFT G+ PDI+ NPH FPSR T G
Sbjct: 876 IGDKFASRHGQKGILSRLWPAEDMPFTESGMSPDILFNPHGFPSRMTIGMLIESMAGKSA 935
Query: 976 XXXXXXXCSGLKRYATPFA----TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
GL ATPF +++ E L AG++ +GTERLY G +G + + I
Sbjct: 936 SLH------GLCHDATPFTFSEENSALEHFGELLKAAGYNYYGTERLYSGLSGLELEADI 989
Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
FIG +YQRL HM DK + R TG +T QP+ R GGI+FGEMERD L+AHG +
Sbjct: 990 FIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPMGGRNVQGGIRFGEMERDALLAHGTSF 1049
Query: 1092 NLHERLFTLSDSYQMHICRKCKNVANVIQXX---XXXXXXXXXPYCRICDSGDDIVKANV 1148
LH+RLF SD +C C ++ + + C +C+ D I +V
Sbjct: 1050 LLHDRLFNCSDRSVAQVCMDCGSLLSTLLEKPPPNWSATRHRKTICLLCNKSDSIETVSV 1109
Query: 1149 PYGAKLLCQELFSMGITLKFDTE 1171
PY K EL +M I +K D +
Sbjct: 1110 PYVFKYFVAELAAMNIKIKLDVK 1132
Score = 143 (55.4 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 74/278 (26%), Positives = 113/278 (40%)
Query: 500 PSHWGKICFLSTPDGENCGLVKNLG-----VTGLVSTSILEPIFEQLFNSGMEKLADDAS 554
P WG +C + TPDGE CGL+ ++ V + TS L + L + G+ +
Sbjct: 489 PESWGFLCPVHTPDGEPCGLMNHMTAHCEIVAPVYPTSTLPGL---LCSLGVNAADGNPG 545
Query: 555 YSLGGKFKVFVDGDWIG-VCKD-SLSFVSXXXXXXXXXXX--PTQVEIKRDELQSEVRIF 610
+ + V +DG IG V K+ + S + P EI + ++
Sbjct: 546 QAYSDCYPVILDGAMIGWVEKEVAPSVIESLRRFKVLGEKKVPPWTEIVLVPQTGKASLY 605
Query: 611 MDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK 670
P +V + + SL GK EL+G E+ + K
Sbjct: 606 PGLYLFTTPCRMVRTVRNL-SL-GKQ------------ELIGIFEQ----VYLNVGIFEK 647
Query: 671 DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
+IED TH EL +L + IPF++H+ + R +YQ Q S Q +GFP +
Sbjct: 648 EIEDGVT---THQELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQM-SKQTMGFPLHSYQY 703
Query: 731 RVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHIL 766
R D ++L PQ PL R + D Y G N I+
Sbjct: 704 RSDNKLYRLQTPQSPLVRPAMYDHYDVDNYPIGTNAIV 741
Score = 84 (34.6 bits), Expect = 1.0e-71, Sum P(2) = 1.0e-71
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 166 IGRIPVMVKSDLCWMKGVEKGDCDFDH------GGYFIIKGAEKV 204
+G++P+MVKS LC + G+ + H GGYFI+ G EKV
Sbjct: 133 LGQMPIMVKSKLCNLHGLSPKELLEHHEEAEEMGGYFIVNGIEKV 177
>UNIPROTKB|F1SPQ0 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 OMA:DMIMNPH EMBL:FP565199
Ensembl:ENSSSCT00000000178 Uniprot:F1SPQ0
Length = 902
Score = 685 (246.2 bits), Expect = 2.2e-71, Sum P(2) = 2.2e-71
Identities = 248/868 (28%), Positives = 391/868 (45%)
Query: 111 PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIP 170
P RL++MTYS+ + V ++ YT+ G ++ I+ + IGR+P
Sbjct: 96 PHECRLRDMTYSAPITVDIE---YTR----------GSQRIIRNA--------LPIGRMP 134
Query: 171 VMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS----N 220
+M++S C + G + +C D GGYFI+KG EKV + QEQ+ R+ V
Sbjct: 135 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKG 194
Query: 221 SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSD 280
++G +V + K++R +M+ +K G L LS +IPI I+F A+GV SD
Sbjct: 195 TVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRHNTLSEDIPIVIIFKAMGVESD 245
Query: 281 KEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF----PPG 336
+EIV +I T E ++ S+ + K F + ALKY+ ++ P
Sbjct: 246 QEIVQMIG-TEEH--VMAAFGPSLEECQ-KAQIFTQ-MQALKYIGNKVRRQRMWGGGPKK 300
Query: 337 ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR--------KCDNRDDFRNKX 388
EE L S T + + KC+ A RR K D+RD + NK
Sbjct: 301 TKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKR 358
Query: 389 XXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDASILTNGLSRAFST 447
+ M K + + R + + ++ +TNG+ A ST
Sbjct: 359 LELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAIST 418
Query: 448 GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
G WS + +R G+ L R + + L + R Q + T KV R PS WG +C
Sbjct: 419 GNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLC 477
Query: 508 FLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL----ADDASYSLGGKFK 562
TP+GE CGLVKNL + ++T + + PI + N G+E + ++ SY F
Sbjct: 478 PSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP--NVFL 535
Query: 563 VFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLV 622
VF++G+ +GV +D V+ V I + V I D GR+ RP ++
Sbjct: 536 VFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYII 595
Query: 623 VENMGKI---KSLE--GKNY-TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
V+ K +E + Y F+ L ++E + EE DC A + KD
Sbjct: 596 VKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDT---- 651
Query: 677 PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
TH E++ LLG+ G+IP+ +H+ + R YQ QA+G N R+DTL
Sbjct: 652 ----THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAM-GKQAMGTIGYNQRNRIDTLM 706
Query: 737 HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
+ L YPQ+P+ +T + ++ +L GQNA VAV + GY+ ED+LV+N
Sbjct: 707 YLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQNATVAVMSYSGYDIEDALVLN 755
Query: 797 RASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFI 856
+ASL+RG R ++ K + Q + +++ + I R + LD DG
Sbjct: 756 KASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLD-AATRKPIWRHEILDADGICSP 814
Query: 857 GANLQSGDIVIGKYADS-------GA---------DHSIKLKHTERGMVQKVVLSSNDDG 900
G +++ +++ K + G+ D I K ++KV++SSN +
Sbjct: 815 GEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAED 874
Query: 901 KNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
+ LRQ R P +GDKFSS HGQKG
Sbjct: 875 AFLIKMLLRQTRRPEIGDKFSSRHGQKG 902
Score = 70 (29.7 bits), Expect = 2.2e-71, Sum P(2) = 2.2e-71
Identities = 30/119 (25%), Positives = 54/119 (45%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
+F GLV I+S+N FI ++K + E + DP W +Y ++ G
Sbjct: 29 AFLKVKGLVKQHIDSFNYFINVEIKKIMKA-NEKVTSDA-DPM------WYLKYLNIYVG 80
Query: 90 QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
+++ SF + P RL++MTYS+ + V +++ +Q R+ + GR
Sbjct: 81 LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEYTRGSQ-RIIRNALPIGR 132
>UNIPROTKB|F1NLV9 [details] [associations]
symbol:F1NLV9 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0017126 "nucleologenesis"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0003677 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:AADN02041199 IPI:IPI00576768
Ensembl:ENSGALT00000014017 Uniprot:F1NLV9
Length = 1016
Score = 699 (251.1 bits), Expect = 3.8e-70, Sum P(2) = 3.8e-70
Identities = 179/504 (35%), Positives = 259/504 (51%)
Query: 674 DKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
D P TH EL +L + +IPF++H+ + R +YQ Q Q +GFP N R D
Sbjct: 535 DVMPGVTTHQELFPHSILSVVANLIPFSDHNQSPRNMYQCQM-GKQTMGFPVYNYKDRSD 593
Query: 734 TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
+ L PQ PL R + D G Y P G N++VAV + GY+ ED++
Sbjct: 594 NKLYLLHTPQSPLVRPRMYDYYGMDSY--------PV---GTNSVVAVISYSGYDMEDAM 642
Query: 794 VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGF 853
++N++S ERG I+ ++ K R D++V FG + LD DG
Sbjct: 643 IVNKSSWERGFAYGSVIKMESIDLSLKA----NRGGDNLV-FGIRPGDPNVKEKLDADGL 697
Query: 854 PFIGANLQSGDIVIGKY-ADSGADHSIKLKHTERGMVQKVVLSSNDDGKN-F--SVVSLR 909
PF+G+ LQ GD ++G ++ ++ E G+V + L SND G F + +++R
Sbjct: 698 PFVGSILQPGDPFYSYMNLNTGETFTVYYQNKEVGIVDNIKLCSNDRGTGKFKKACITVR 757
Query: 910 QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXX 969
R+P +GDKF+S HGQKG+L L E+ PFT G+VPDI+ NPH FPSR T G
Sbjct: 758 VPRNPTVGDKFASRHGQKGILSQLWPVEDMPFTENGMVPDILFNPHGFPSRMTIGMLIES 817
Query: 970 XXXXXXXXXXXXXCSGLKRYATPFA-TPSVDAIT---EQLHRAGFSKWGTERLYDGRTGE 1025
G ATPF T A+ E L AG++ +GTE++Y G +G
Sbjct: 818 MAGKSAALH------GAYYDATPFTFTEKNSALKYFGETLVSAGYNFFGTEKMYSGISGV 871
Query: 1026 MVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1085
+ + IF+G +YQRL HM DK + R TGP +T QP+ R GGI+FGEMERD L+
Sbjct: 872 ELEADIFVGVVYYQRLRHMVSDKFQVRTTGPRDSVTNQPIKGRNVEGGIRFGEMERDALL 931
Query: 1086 AHGAAANLHERLFTLSDSYQMHICRKCKNVAN-VIQXXXXXXXXXXXPY-CRICDSGDDI 1143
AHG + LH+RLF+ SD + ++C C ++ + ++Q Y C +C D I
Sbjct: 932 AHGTSFLLHDRLFSCSDGCEAYVCTSCGSMLSPLLQRPPPSSVASSRRYSCMLCGRMDTI 991
Query: 1144 VKANVPYGAKLLCQELFSMGITLK 1167
VP+ + EL +M I L+
Sbjct: 992 QIIPVPHVFRYFLAELAAMNIKLR 1015
Score = 167 (63.8 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 77/275 (28%), Positives = 117/275 (42%)
Query: 500 PSHWGKICFLSTPDGENCGLVKNLG-----VTGLVSTSILEPIFEQLFNSGMEKLADDAS 554
P WG +C + TPDGE CGL+ ++ VT +V + L P+ L G+ + S
Sbjct: 376 PESWGFLCPVDTPDGEPCGLMNHMTAVCEIVTEMVPVTDLPPLLCAL---GVVPIDATPS 432
Query: 555 YSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAG 614
++V +DG +G + L+ TQ KR ++EV + G
Sbjct: 433 RPYAECYRVLLDGAVVGWVEWDLA---PQVAEALRRFKITQE--KRFPSRAEVVLIPMTG 487
Query: 615 R-ILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIE 673
+ L P L + KN LL +G E +GT E+ + + D+
Sbjct: 488 KPSLYPGLFIFTTPCRMVRPVKN-----LL-YGRKEWIGTLEQ----VFMNVATMESDV- 536
Query: 674 DKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
P TH EL +L + +IPF++H+ + R +YQ Q Q +GFP N R D
Sbjct: 537 --MPGVTTHQELFPHSILSVVANLIPFSDHNQSPRNMYQCQM-GKQTMGFPVYNYKDRSD 593
Query: 734 TLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHIL 766
+ L PQ PL R + D G Y G N ++
Sbjct: 594 NKLYLLHTPQSPLVRPRMYDYYGMDSYPVGTNSVV 628
Score = 78 (32.5 bits), Expect = 3.8e-70, Sum P(2) = 3.8e-70
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 166 IGRIPVMVKSDLCWMKGVEKGDCDFDH------GGYFIIKGAEKV 204
+G +P+MVKS LC + + + H GGYFII G EKV
Sbjct: 19 VGFVPIMVKSKLCNLYNLSPQELIQHHEEEEEMGGYFIINGLEKV 63
Score = 39 (18.8 bits), Expect = 4.9e-66, Sum P(2) = 4.9e-66
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 34 FNEYGLVSHQINSYNEFIKNGL 55
F EYG+V H + + I L
Sbjct: 90 FTEYGVVMHCVKDEHSAINMNL 111
>ASPGD|ASPL0000012082 [details] [associations]
symbol:AN3933 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:BN001302 EMBL:AACD01000064
GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222963
OrthoDB:EOG4W11N4 OMA:FNLLIFM RefSeq:XP_661537.1 STRING:Q5B697
EnsemblFungi:CADANIAT00004761 GeneID:2873357 KEGG:ani:AN3933.2
Uniprot:Q5B697
Length = 1231
Score = 635 (228.6 bits), Expect = 3.2e-68, Sum P(4) = 3.2e-68
Identities = 162/451 (35%), Positives = 234/451 (51%)
Query: 681 THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
TH E + +L + + PF++++ + R +YQ Q S Q +G P T R D ++L
Sbjct: 696 THIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQM-SKQTMGTPGTAIDYRTDNKLYRLQ 754
Query: 741 YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
Q P+ R + + G + P NG NA+VA+ + GY+ +D++++N++S
Sbjct: 755 TGQTPIVRPPLYNAYGLDNF------P-----NGTNAVVAIISYTGYDMDDAMIINKSSH 803
Query: 801 ERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD---SLDDDGFPFIG 857
ERG ++ +D K+ + + FG R + +LD+DGFP IG
Sbjct: 804 ERGFGYGTVYKTKVHSLDEKDSRRTKSKQAVQKLFGFAPGSEIRAEWRATLDEDGFPHIG 863
Query: 858 ANLQSGDIVIG----KY---ADS-----GADHSIKLKHTERGMVQKVVLSSNDDGKN-FS 904
A ++ G IV +Y +DS G H +K K +ER + + + ++ G
Sbjct: 864 AEIKEGSIVAAYHTVRYDATSDSYINVDGITHFVKYKDSERAYIDSIRIMGSETGTEPAQ 923
Query: 905 VVSL--RQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
+S+ R R P +GDKFSS HGQKGV L + PF+ GI PD++INPHAFPSR T
Sbjct: 924 AISVKYRIPRKPIIGDKFSSRHGQKGVCSQLWPAVDMPFSESGIQPDLIINPHAFPSRMT 983
Query: 963 PGQXXXXXXXXXXXXXXX-XXCSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDG 1021
Q C+ + ++ + + D EQL RAG++ +G E LY G
Sbjct: 984 IAQMIESMAGKAGALHGHPQDCTPFQ-FSEEYT--ATDYFGEQLRRAGYNYYGNEPLYSG 1040
Query: 1022 RTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1081
TG+ + IFIG YQRL HM DK + R TGPV+ LT QPV R + GGI+ GEMER
Sbjct: 1041 ITGKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNNLTGQPVKGRAKGGGIRVGEMER 1100
Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
D LIAHGAA L +RL SDS + ICR C
Sbjct: 1101 DSLIAHGAAYILQDRLMNCSDSQRAWICRDC 1131
Score = 99 (39.9 bits), Expect = 3.2e-68, Sum P(4) = 3.2e-68
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 500 PSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP--IFEQLFNSGMEKLADDASYSL 557
P WG +C + TPDG CGL+ +L LV+TS + + + L G+ +++S SL
Sbjct: 534 PESWGFLCPVHTPDGSPCGLLNHLAHKCLVATSDTDVSHLPKLLVQLGVR---NESSVSL 590
Query: 558 GGKFKVFVDGDWIGVC 573
V +DG IG C
Sbjct: 591 DESVTVQLDGRIIGYC 606
Score = 77 (32.2 bits), Expect = 3.2e-68, Sum P(4) = 3.2e-68
Identities = 28/127 (22%), Positives = 61/127 (48%)
Query: 86 MRFGQVTLDKPSFFAGNG--GDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDK 143
+R +V L+KP+ N +++P R ++ TY +++ K++++V D
Sbjct: 98 VRIKEVFLEKPTIPLTNKYTARNRNIYPSECRERHATYRGKLRAKIEYRVNN-----GDW 152
Query: 144 FKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFI 197
+ RE +G++P+M++++ C+++ V+ + + GGYFI
Sbjct: 153 TEQVRE----------------LGQVPIMLRTNRCYLEKATPAELVQHKEESEELGGYFI 196
Query: 198 IKGAEKV 204
+ G EK+
Sbjct: 197 VNGNEKL 203
Score = 51 (23.0 bits), Expect = 3.2e-68, Sum P(4) = 3.2e-68
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKF 1168
GD++ VP + L EL +MGI +KF
Sbjct: 1199 GDNVTVVAVPGVLRYLDVELAAMGIRMKF 1227
>CGD|CAL0002109 [details] [associations]
symbol:RPA135 species:5476 "Candida albicans" [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 CGD:CAL0002109 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000024 GO:GO:0003899
eggNOG:COG0085 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:XP_720354.1 RefSeq:XP_888689.1
STRING:Q5AFK6 GeneID:3637996 GeneID:3704205 KEGG:cal:CaO19.7062
KEGG:cal:CaO19_7062 Uniprot:Q5AFK6
Length = 1166
Score = 646 (232.5 bits), Expect = 8.5e-68, Sum P(4) = 8.5e-68
Identities = 168/475 (35%), Positives = 243/475 (51%)
Query: 681 THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
+H E + +L + + PF++ + + R +YQ Q Q +G P T R D ++L
Sbjct: 662 SHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQM-GKQTMGTPGTALVHRSDNKLYRLQ 720
Query: 741 YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
Q P+ + + D YG ++ P NG NAIVAV + GY+ +D++++N+++
Sbjct: 721 TGQTPIVKANLYD-----DYGMDNF---P---NGMNAIVAVISYTGYDMDDAMIINKSAD 769
Query: 801 ERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN---FGKIQSKIGRVDSLDDDGFPFIG 857
ERG F + YK E ++ RR D + FG + + LD DG P IG
Sbjct: 770 ERG-FGYGTV--YKTE--KVDLSQSRRRGDPITQHFGFGSDEWPEAWKEKLDADGLPLIG 824
Query: 858 ANLQSGDIVIGKYADSGADHSIKLKHT-ERGMVQKVVLSSND----DGKNFSVVSLRQVR 912
++ GD ++ Y D+ +K H+ E +++V L +D +G+ ++ R R
Sbjct: 825 VKVEEGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEVKLLGDDSNEQEGQQITI-KYRITR 883
Query: 913 SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXX 972
P +GDKFSS HGQKGV Q + PFT G+ PD++INPHAFPSR T G
Sbjct: 884 QPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSRMTIGMFVESLAG 943
Query: 973 XXXXXXXXXXCSGLKRYATPFA-----TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMV 1027
G+ + +TP+ TP+ D EQL +AG++ G E +Y G TGE +
Sbjct: 944 KAGALH------GIAQDSTPWKFNEQDTPA-DYFGEQLLKAGYNYHGNEPMYSGATGEEL 996
Query: 1028 RSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 1087
R I+IG +YQRL HM DK + R+TGPV+ LT QPV RKR GGI+ GEMERD LI H
Sbjct: 997 RCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGH 1056
Query: 1088 GAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDD 1142
G + L +RL SD Q +CR C ++ Q CR C G D
Sbjct: 1057 GTSFLLQDRLLNCSDYTQTPVCRSCGSILTT-QTSVPRIGSMASIRCRRCAVGLD 1110
Score = 79 (32.9 bits), Expect = 8.5e-68, Sum P(4) = 8.5e-68
Identities = 53/247 (21%), Positives = 92/247 (37%)
Query: 337 ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXX 396
E +E + + L K R L +M++ L +G DN D +++
Sbjct: 327 EVGKEVLKRIVLVHLPNNADKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLY 386
Query: 397 XXXXKVHIAHARKRMAKALQRDL-------YGDRTVRPIEYYLDASILTNGLSRAFSTGA 449
K I + + +Q D+ + DR + + L STG
Sbjct: 387 GMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDRKYMTRVFSRINENIGQKLQYFLSTGN 446
Query: 450 W-SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG-KVGDARYPHPSHWGKIC 507
S +++SG + N + + R + + K R P WG +C
Sbjct: 447 LVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLC 506
Query: 508 FLSTPDGENCGLVKNLGVTGLVST--SILEPIFEQLFNSGMEKLADDASYSLGGKFK-VF 564
+ TPDG CGL+ +L ++T S + + + L G+ L D S++ G V
Sbjct: 507 PVHTPDGSPCGLLNHLSHKCKIATEASDVSQVPKALTQLGV--LPAD-SFAAGPNLCCVQ 563
Query: 565 VDGDWIG 571
+DG +G
Sbjct: 564 LDGKIVG 570
Score = 65 (27.9 bits), Expect = 8.5e-68, Sum P(4) = 8.5e-68
Identities = 33/120 (27%), Positives = 54/120 (45%)
Query: 86 MRFGQVTLDKPSFFAGNGGD-EHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
+R V L KPS A + FP R + +TY SR+ + V + V ++ V S+
Sbjct: 79 IRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDEEEV-SEVR 137
Query: 145 KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKV 204
+ G+ + K S+ + + + L K E+ D + GGYFI+ G EK+
Sbjct: 138 EAGQIPIMLK---SNRC------HLEKLSPNQLVEAK--EESD---ELGGYFIVNGIEKL 183
Score = 63 (27.2 bits), Expect = 8.5e-68, Sum P(4) = 8.5e-68
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
GDD +P+ K L EL +MGI ++++ E
Sbjct: 1133 GDDTTTVAIPFVLKYLDSELSAMGIKMRYNVE 1164
Score = 42 (19.8 bits), Expect = 6.0e-64, Sum P(4) = 6.0e-64
Identities = 18/77 (23%), Positives = 30/77 (38%)
Query: 309 NKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYM--VK 366
N D+FR ++ + L+ G P + L L+G K + Y+ +K
Sbjct: 343 NNADKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIK 402
Query: 367 CLLQAYSGRRKCDNRDD 383
+Q+ R N DD
Sbjct: 403 LQIQSDINRGVGINFDD 419
>SGD|S000006214 [details] [associations]
symbol:RPA135 "RNA polymerase I second largest subunit A135"
species:4932 "Saccharomyces cerevisiae" [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IDA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 SGD:S000006214
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 EMBL:Z71255
EMBL:U31900 EMBL:BK006949 EMBL:Z49919 GO:GO:0005736 GO:GO:0003899
GO:GO:0042790 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
HOGENOM:HOG000222963 OrthoDB:EOG4W11N4 EMBL:M62804 PIR:A39607
RefSeq:NP_015335.1 ProteinModelPortal:P22138 DIP:DIP-135N
IntAct:P22138 MINT:MINT-423299 STRING:P22138 PaxDb:P22138
PeptideAtlas:P22138 EnsemblFungi:YPR010C GeneID:856119
KEGG:sce:YPR010C CYGD:YPR010c OMA:FNLLIFM NextBio:981198
Genevestigator:P22138 GermOnline:YPR010C Uniprot:P22138
Length = 1203
Score = 626 (225.4 bits), Expect = 1.5e-66, Sum P(4) = 1.5e-66
Identities = 162/470 (34%), Positives = 244/470 (51%)
Query: 681 THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
TH E + +L + + PF++ + + R +YQ Q Q +G P R D ++L
Sbjct: 687 THVEFTPTNILSILANLTPFSDFNQSPRNMYQCQM-GKQTMGTPGVALCHRSDNKLYRLQ 745
Query: 741 YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
Q P+ + + D YG ++ P NG NA+VAV + GY+ +D++++N+++
Sbjct: 746 TGQTPIVKANLYD-----DYGMDNF---P---NGFNAVVAVISYTGYDMDDAMIINKSAD 794
Query: 801 ERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN---FGKIQSKIGRVDSLDDDGFPFIG 857
ERG + YK E ++ + R D + FG + ++ LD+DG P+IG
Sbjct: 795 ERGF---GYGTMYKTE--KVDLALNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIG 849
Query: 858 ANLQSGDIVIGKYADSGADHSIKLKHT-ERGMVQKVVLSSNDDGK--NFSVVSLR-QVR- 912
++ GD + + D+ IK H+ E +++V L ++ K VS++ ++R
Sbjct: 850 TYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRR 909
Query: 913 SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXX 972
+P +GDKFSS HGQKGV + PF+ GI PDI+INPHAFPSR T G
Sbjct: 910 TPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAG 969
Query: 973 XXXXXXXXXXCSGLKRYATPFA-----TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMV 1027
G+ + +TP+ TP+ D EQL +AG++ G E +Y G TGE +
Sbjct: 970 KAGALH------GIAQDSTPWIFNEDDTPA-DYFGEQLAKAGYNYHGNEPMYSGATGEEL 1022
Query: 1028 RSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 1087
R+ I++G +YQRL HM DK + R+TGPV+ LT QPV RKR GGI+ GEMERD LI H
Sbjct: 1023 RADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGH 1082
Query: 1088 GAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRIC 1137
G + L +RL SD Q +CR+C ++ Q CR C
Sbjct: 1083 GTSFLLQDRLLNSSDYTQASVCRECGSILTT-QQSVPRIGSISTVCCRRC 1131
Score = 84 (34.6 bits), Expect = 1.5e-66, Sum P(4) = 1.5e-66
Identities = 66/322 (20%), Positives = 134/322 (41%)
Query: 85 SMRFGQVTLDKPSFFAG-NGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDK 143
S+ QV++ KP G + E ++P +R + +Y ++ +K+++ V
Sbjct: 96 SVSVEQVSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRGKLLLKLKWSV---------- 145
Query: 144 FKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVE-------KGDCDFDHGGYF 196
G E + + D G +PVM++S+ C + + K + D + GGYF
Sbjct: 146 -NNGEENLFE---VRD------CGGLPVMLQSNRCHLNKMSPYELVQHKEESD-EIGGYF 194
Query: 197 IIKGAEKVF---VAQEQ---ICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDI 250
I+ G EK+ + Q + + + R +N G + ++ R+ + + +
Sbjct: 195 IVNGIEKLIRMLIVQRRNHPMAIIRPSFANR-GASYSHYGIQIRSVRPDQTSQTNVLHYL 253
Query: 251 KGGEKVLSVYFLSTE--IPIWILFFALGVSSDKEIVN-LIDFTCEDCSILNILFASIHDA 307
G+ + E +P+ ++ AL +SD+EI + +I +D + + L +
Sbjct: 254 NDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGIIGNDVKDSFLTDRLELLLRGF 313
Query: 308 DNKCDEFRKGRNALKYV-DKLIKGTTFPPGEST----EECMNTYLFPSL--HGTKQKARF 360
+ + L+Y+ DK P +S +E ++ + L G++ K R
Sbjct: 314 KKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRM 373
Query: 361 LGYMVKCLLQAYSGRRKCDNRD 382
L +M++ L +G DN D
Sbjct: 374 LLFMIRKLYSLVAGECSPDNPD 395
Score = 80 (33.2 bits), Expect = 1.5e-66, Sum P(4) = 1.5e-66
Identities = 49/231 (21%), Positives = 91/231 (39%)
Query: 353 GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMA 412
G++ K R L +M++ L +G DN D +++ K I + +
Sbjct: 366 GSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNII 425
Query: 413 KALQRDLYGDRTVR-PIEYYLDASIL-TN---GLSRAF--STGAW-SHPFKRTERISGIV 464
++ D+ + + Y+ ++ N G + STG S +++SG
Sbjct: 426 AQVRMDINRGMAINFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLVSQSGLDLQQVSGYT 485
Query: 465 ANLGRANPLQTLVDLRRTRQQVQYTG-KVGDARYPHPSHWGKICFLSTPDGENCGLVKNL 523
+ N + + R + + K R P WG +C + TPDG CGL+ +
Sbjct: 486 VVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHF 545
Query: 524 GVTGLVST--SILEPIFEQLFNSGMEKLADDASYSLGGKFK-VFVDGDWIG 571
+ST S + I L++ G+ + +++ G V +DG IG
Sbjct: 546 AHKCRISTQQSDVSRIPSILYSLGVAPASH--TFAAGPSLCCVQIDGKIIG 594
Score = 56 (24.8 bits), Expect = 1.5e-66, Sum P(4) = 1.5e-66
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
G++ +P+ K L EL +MGI L+++ E
Sbjct: 1170 GNETTTVAIPFVLKYLDSELSAMGIRLRYNVE 1201
>TAIR|locus:2019272 [details] [associations]
symbol:NRPA2 "nuclear RNA polymerase A2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002684 GO:GO:0005829 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 IPI:IPI00518589 RefSeq:NP_564341.2
UniGene:At.16301 ProteinModelPortal:F4I366 SMR:F4I366 PRIDE:F4I366
EnsemblPlants:AT1G29940.1 GeneID:839872 KEGG:ath:AT1G29940
Uniprot:F4I366
Length = 1178
Score = 587 (211.7 bits), Expect = 4.1e-66, Sum P(4) = 4.1e-66
Identities = 167/510 (32%), Positives = 244/510 (47%)
Query: 681 THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
TH E+ + ++ + + P+++H+ + R +YQ Q + Q + + T R D + L
Sbjct: 675 THEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQM-AKQTMAYSTQALQFRADQKIYHLQ 733
Query: 741 YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
PQ P+ RT Y I P G NAIVAV H G++ ED++++N++S+
Sbjct: 734 TPQSPVVRTKT--------YTTYSIDENP---TGTNAIVAVLAHTGFDMEDAMILNKSSV 782
Query: 801 ERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANL 860
ERGM H + Y+ E + Q R S +F + +K +D DG P +G L
Sbjct: 783 ERGMC---HGQIYQTENIDLSDQNSRFDSGSK-SFRRSTNKAEHF-RIDADGLPSVGQKL 837
Query: 861 QSGDIVIGKYAD-SGADHSIKLKHTERGMVQ--KVVLSSNDDGKNFSVVSLRQVRSPCLG 917
+ Y + + +K K T+ +V V + S + ++ R R+P +G
Sbjct: 838 YPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKKHPQRANI-RFRHARNPIIG 896
Query: 918 DKFSSMHGQKGVLGFLESQENFPFT-IQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXX 976
DKFSS HGQKGV L + PF + G+ PD++INPHAFPSR T
Sbjct: 897 DKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGS 956
Query: 977 XXXXXXCS-----GLKRYATPFATPS---VDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
+ +K+ + S VD + L GF+ +GTE LY G G ++
Sbjct: 957 LHGKFVDATPFRDAVKKTNGEEESKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELK 1016
Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
IF+GP +YQRL HM DK + R+TG V LT QP+ RKR GGI+FGEMERD L+AHG
Sbjct: 1017 CEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHG 1076
Query: 1089 AAANLHERLFTLSDSYQMHICRKC-----KNVANVIQXXXXXXXXXXXP-------YCRI 1136
A+ LH+RL T SD + +C C +V NV Q P C
Sbjct: 1077 ASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVTCYS 1136
Query: 1137 CDSGDDIVKANVPYGAKLLCQELFSMGITL 1166
C + + +PY + L EL SM I +
Sbjct: 1137 CKTSKGMETVAMPYVFRYLAAELASMNIKM 1166
Score = 97 (39.2 bits), Expect = 4.1e-66, Sum P(4) = 4.1e-66
Identities = 44/203 (21%), Positives = 73/203 (35%)
Query: 340 EECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXX 399
E + YLF L K L ++++ L DN D +N+
Sbjct: 322 EAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVITIY 381
Query: 400 XKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTN-------GLS--RAFSTGAW 450
K + ++ L+ +L + E D L N G S TGA
Sbjct: 382 LKEKLEEWLRKCKSLLKDELDNTNSKFSFESLADVKKLINKNPPRSIGTSIETLLKTGAL 441
Query: 451 -SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG-KVGDARYPHPSHWGKICF 508
+ ++ +G R N L+ L R + + G + R P WG +C
Sbjct: 442 KTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPESWGFLCP 501
Query: 509 LSTPDGENCGLVKNLGVTGLVST 531
+ TPDG CGL+ ++ T +++
Sbjct: 502 VHTPDGTPCGLLNHMTRTSRITS 524
Score = 88 (36.0 bits), Expect = 4.1e-66, Sum P(4) = 4.1e-66
Identities = 37/132 (28%), Positives = 64/132 (48%)
Query: 167 GRIPVMVKSDLCWMKGVE--K----GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSN 220
G+ P+M+ S LC +KG + K + + GGYFI+ G E+VF I KR ++
Sbjct: 122 GQFPIMLMSKLCSLKGADCRKLLKCKESTSEMGGYFILNGIERVFRCV--IAPKRNHPTS 179
Query: 221 SMGWTVAYKSENKRNRLIV-RLV--DMS----KFEDIKGGEKVLSVYFLSTE--IPIWIL 271
+ + + E ++ +V R V D S K ++ G + + + E +P+ ++
Sbjct: 180 MIRNSFRDRKEGYSSKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLV 239
Query: 272 FFALGVSSDKEI 283
AL S D+EI
Sbjct: 240 LKALTNSCDEEI 251
Score = 74 (31.1 bits), Expect = 4.1e-66, Sum P(4) = 4.1e-66
Identities = 31/117 (26%), Positives = 48/117 (41%)
Query: 34 FNE-YGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGE-GEWRYASMRFGQV 91
F E + LV+H I S++ GL F+ V YDP+ + E W + F
Sbjct: 16 FKELHNLVTHHIESFDYMTLKGLDVMFNRIKPVSV---YDPNTENELSIWLENPLVFAP- 71
Query: 92 TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
K SF + + + + P R ++Y+ V F+ Y V DKF G+
Sbjct: 72 --QKESFKSTSR--KEPLLPFECRQAKISYTGTFMADVCFK-YNDGVVVRDKFDFGQ 123
Score = 38 (18.4 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 654 EEEEDCCTAWGIKYLLKD 671
E E D A G YLL D
Sbjct: 1066 EMERDSLLAHGASYLLHD 1083
>FB|FBgn0003278 [details] [associations]
symbol:RpI135 "RNA polymerase I 135kD subunit" species:7227
"Drosophila melanogaster" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005730 EMBL:AE014134 GO:GO:0022008
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 EMBL:X17298 EMBL:AY075569 PIR:JQ0354
RefSeq:NP_476708.1 UniGene:Dm.30753 ProteinModelPortal:P20028
STRING:P20028 PaxDb:P20028 EnsemblMetazoa:FBtr0078054 GeneID:33210
KEGG:dme:Dmel_CG4033 CTD:33210 FlyBase:FBgn0003278
GeneTree:ENSGT00550000074993 InParanoid:P20028 OrthoDB:EOG4ZKH24
PhylomeDB:P20028 GenomeRNAi:33210 NextBio:782449 Bgee:P20028
GermOnline:CG4033 Uniprot:P20028
Length = 1129
Score = 541 (195.5 bits), Expect = 4.9e-62, Sum P(2) = 4.9e-62
Identities = 138/406 (33%), Positives = 198/406 (48%)
Query: 774 GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMV 833
G NAIVAV + GY+ ED++++N+A+ ERG +Y + K + + ++SS
Sbjct: 736 GTNAIVAVISYTGYDMEDAMIINKAAYERGF-------AYGSIYKTKFLTLDKKSS---- 784
Query: 834 NFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSI-KLKHTERGMVQKV 892
F + + LD DG P G+ L G + + A + + K+ E +V+ +
Sbjct: 785 YFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKEDCIVESI 844
Query: 893 -VLSSND-DGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDI 950
L S D K ++LR R +GDKF+S GQKG+ E+ PFT G++PDI
Sbjct: 845 RQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDI 904
Query: 951 VINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFA----TPSVDAITEQLH 1006
V NPH FPSR T G ATPF ++D + L
Sbjct: 905 VFNPHGFPSRMT------IAMMIETMAGKGAAIHGNVYDATPFRFSEENTAIDYFGKMLE 958
Query: 1007 RAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVA 1066
G++ +GTERLY G G + + IF G YQRL HM DK + R+TG V T QP+
Sbjct: 959 AGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIK 1018
Query: 1067 DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA----NVIQXX 1122
RKR GG++FGEMERD LI+HGAA L +RLF SD +C KC ++ +++
Sbjct: 1019 GRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQRIVKRN 1078
Query: 1123 XXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
CR+C + +P+ K L EL S+ I +F
Sbjct: 1079 ETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINARF 1124
Score = 180 (68.4 bits), Expect = 4.9e-62, Sum P(2) = 4.9e-62
Identities = 135/611 (22%), Positives = 246/611 (40%)
Query: 183 VEKGDCDFDHGGYFIIKGAEKV---FVAQEQ---ICLKRL-WVS-----NSMGWTVAYKS 230
V+ G+ D + GG F+I+G EK+ + + IC+KR W + +G V
Sbjct: 156 VKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVR 215
Query: 231 ENKRNRL-IVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVN-LID 288
E++ + +V ++ + + K LS Y +P+ ++ L +D+EI N L+
Sbjct: 216 EDESSLSNVVHYLNNGTAKFMFSHVKRLS-Y-----VPVCLILKCLMDYTDEEIYNRLVQ 269
Query: 289 FTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFP------PGES-TEE 341
D ++ + A + + N+ + + + ++ L + FP P + T+
Sbjct: 270 GYESDQYYVSCVQAMLREVQNE-NVYTHAQ-CKSFIGNLFRAR-FPEVPEWQPDDDVTDF 326
Query: 342 CMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXK 401
+ + L + K + + +M++ L Q G+ K +N D +
Sbjct: 327 ILRERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLS 386
Query: 402 VHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTG-AWSHPFKRTE-- 458
+ ++ + LQ+ L + G+ RA + A + RT
Sbjct: 387 ERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAGGVGRAIESFLATGNIASRTGLG 446
Query: 459 --RISGIVANLGRANPLQTLVDLRRTRQQVQYTG-KVGDARYPHPSHWGKICFLSTPDGE 515
+ SG+V N ++ + R + +T + +AR P WG IC + TPDG
Sbjct: 447 LMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTPDGT 506
Query: 516 NCGLVKNLGVTGLVST----SILEPIFEQLFNSGMEKLADDASYSLGGK-FKVFVDGDWI 570
CGL+ +L +T +S +++ I + L + GM L++ Y LG K + VF+DG +
Sbjct: 507 PCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMMPLSN-RRY-LGEKLYVVFLDGKHL 564
Query: 571 GVCKDSLS--FVSXXXXXXXXXXXPTQVEI-----KRDELQSEVRIFMDAGRILRPLLVV 623
G S + V P +EI K++ + I R++RP
Sbjct: 565 GHIHQSEAEKIVDELRYGKIFGTLPQMMEIGFIPFKKNGQFPGLYIATGPARMMRP---- 620
Query: 624 ENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHC 683
+ +L+ K +E +GT E+ A K + D TH
Sbjct: 621 -----VWNLKWKR-----------VEYIGTLEQLYMEIAIDAKEMYPDFT-------THL 657
Query: 684 ELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTN-PSIRVDTLSHQLFYP 742
EL + + +IP +++ + R +YQ Q Q +G P N P + L ++L P
Sbjct: 658 ELAKTHFMSNLANLIPMPDYNQSPRNMYQCQM-GKQTMGTPCLNWPKQAANKL-YRLQTP 715
Query: 743 QRPLFRTMISD 753
PLFR + D
Sbjct: 716 GTPLFRPVHYD 726
Score = 139 (54.0 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 44/157 (28%), Positives = 72/157 (45%)
Query: 671 DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTN-PS 729
D ++ P TH EL + + +IP +++ + R +YQ Q Q +G P N P
Sbjct: 645 DAKEMYPDFTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQM-GKQTMGTPCLNWPK 703
Query: 730 IRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQ 789
+ L ++L P PLFR + H + + G NAIVAV + GY+
Sbjct: 704 QAANKL-YRLQTPGTPLFRPV-----------HYDNIQLDDFAMGTNAIVAVISYTGYDM 751
Query: 790 EDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
ED++++N+A+ ERG ++ +D K R
Sbjct: 752 EDAMIINKAAYERGFAYGSIYKTKFLTLDKKSSYFAR 788
Score = 89 (36.4 bits), Expect = 1.9e-52, Sum P(2) = 1.9e-52
Identities = 53/247 (21%), Positives = 111/247 (44%)
Query: 163 NIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKV---FVAQEQ--- 210
N+ +G +P+M++S C + + V+ G+ D + GG F+I+G EK+ + +
Sbjct: 130 NMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHP 189
Query: 211 ICLKRL-WVS-----NSMGWTVAYKSENKRNRL-IVRLVDMSKFEDIKGGEKVLSVYFLS 263
IC+KR W + +G V E++ + +V ++ + + K LS Y
Sbjct: 190 ICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLS-Y--- 245
Query: 264 TEIPIWILFFALGVSSDKEIVN-LIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
+P+ ++ L +D+EI N L+ D ++ + A + + N+ + + +
Sbjct: 246 --VPVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQNE-NVYTHAQ-CKS 301
Query: 323 YVDKLIKGTTFP------PGES-TEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
++ L + FP P + T+ + + L + K + + +M++ L Q G+
Sbjct: 302 FIGNLFRAR-FPEVPEWQPDDDVTDFILRERVMIHLDTYEDKFQLIVFMIQKLFQCAQGK 360
Query: 376 RKCDNRD 382
K +N D
Sbjct: 361 YKVENVD 367
Score = 41 (19.5 bits), Expect = 2.1e-47, Sum P(2) = 2.1e-47
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 300 LFASIHDADNKCDEFRKGRNAL 321
LF +H + + D+F G NA+
Sbjct: 719 LFRPVHYDNIQLDDFAMGTNAI 740
Score = 41 (19.5 bits), Expect = 2.1e-47, Sum P(2) = 2.1e-47
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 273 FALGVSSDKEIVNLIDFTCEDCSILN 298
FA+G ++ +++ + ED I+N
Sbjct: 733 FAMGTNAIVAVISYTGYDMEDAMIIN 758
>WB|WBGene00008781 [details] [associations]
symbol:rpoa-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0043652 "engulfment of apoptotic cell" evidence=IMP]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0003677 GO:GO:0006351 GO:GO:0040035 GO:GO:0043652
GO:GO:0003899 HSSP:P08518 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
HOGENOM:HOG000222963 EMBL:Z75535 PIR:T20870 RefSeq:NP_492476.1
ProteinModelPortal:Q27493 SMR:Q27493 STRING:Q27493 PaxDb:Q27493
EnsemblMetazoa:F14B4.3 GeneID:172752 KEGG:cel:CELE_F14B4.3
UCSC:F14B4.3 CTD:172752 WormBase:F14B4.3 InParanoid:Q27493
NextBio:876871 Uniprot:Q27493
Length = 1127
Score = 539 (194.8 bits), Expect = 9.9e-58, Sum P(4) = 9.9e-58
Identities = 140/419 (33%), Positives = 205/419 (48%)
Query: 774 GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE-VDNKEMQV--KRRSSD 830
G NA VAV + GY+ ED++ +N+AS +RG I+ + V +E + R +
Sbjct: 717 GTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVTERERKTIFYRNPRE 776
Query: 831 DMVNFGKIQSKI-GRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMV 889
++ G I GR LD+ ++ N+++GD K+ H + + G+V
Sbjct: 777 EIKTVGPDGLPIPGRRYFLDE--VYYVTFNMETGDFRTHKF------HYAEPAYC--GLV 826
Query: 890 QKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPD 949
+ V D G +++ R R+P +GDKF+S HGQKG+ FL E+ PF+ G+VPD
Sbjct: 827 RIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPD 886
Query: 950 IVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFA----TPSVDAITEQL 1005
I+ NPH FPSR T G G A+PF +++ E L
Sbjct: 887 IIFNPHGFPSRMTIGMMIESMAGKAAATH------GENYDASPFVFNEDNTAINHFGELL 940
Query: 1006 HRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1065
+AG++ +G E Y G G + IF G +YQRL HM DK + R TGP+ P+T QPV
Sbjct: 941 TKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPV 1000
Query: 1066 ADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXX 1125
RK+ GGI+FGEMERD +IAHG + L +RL SD + CR+C ++ +V+
Sbjct: 1001 KGRKKGGGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAG 1060
Query: 1126 XXXXXX------P--Y-----CRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
P Y CR CD D + VP + L EL +M + +K E
Sbjct: 1061 SHLLKKKRKDDEPLDYTETQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGIE 1119
Score = 146 (56.5 bits), Expect = 1.7e-14, Sum P(4) = 1.7e-14
Identities = 55/204 (26%), Positives = 92/204 (45%)
Query: 671 DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
D E+ +P H EL S L + +IPF +H+ + R +YQ Q Q +G
Sbjct: 626 DPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQM-GKQTMGTAVHAWHS 684
Query: 731 RVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQE 790
R D ++L +PQ+P+ + + Y P G NA VAV + GY+ E
Sbjct: 685 RADNKMYRLQFPQQPMLKLEAYEKYEMDEY------PL-----GTNACVAVISYTGYDME 733
Query: 791 DSLVMNRASLERGMFRSEHIRSYKAE-VDNKEMQV--KRRSSDDMVNFGKIQSKI-GRVD 846
D++ +N+AS +RG I+ + V +E + R +++ G I GR
Sbjct: 734 DAMTINKASYQRGFAHGTVIKVERINLVTERERKTIFYRNPREEIKTVGPDGLPIPGRRY 793
Query: 847 SLDDDGFPFIGANLQSGDIVIGKY 870
LD+ ++ N+++GD K+
Sbjct: 794 FLDE--VYYVTFNMETGDFRTHKF 815
Score = 102 (41.0 bits), Expect = 9.9e-58, Sum P(4) = 9.9e-58
Identities = 23/76 (30%), Positives = 45/76 (59%)
Query: 136 QKRVT-SDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDC 188
Q+ +T + K G + ++ L + II+G++P+M++S+ C ++G+ + G+
Sbjct: 75 QRGLTYAGNLKVGIDVHVNGSRL--DIIEIILGKVPIMLRSEGCHLRGMSRKELVVAGEE 132
Query: 189 DFDHGGYFIIKGAEKV 204
+ GGYFI+ G+EKV
Sbjct: 133 PIEKGGYFIVNGSEKV 148
Score = 84 (34.6 bits), Expect = 9.9e-58, Sum P(4) = 9.9e-58
Identities = 25/99 (25%), Positives = 44/99 (44%)
Query: 437 LTNGLSRAFSTGAW-SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG-KVGD 494
+T G++ +TG + ++ SG R N L+ + R + + + D
Sbjct: 400 ITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTD 459
Query: 495 ARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI 533
R P WG IC + TPDG CGL+ ++ + + T +
Sbjct: 460 VRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDL 498
Score = 44 (20.5 bits), Expect = 9.9e-58, Sum P(4) = 9.9e-58
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 597 EIKRDELQSE-VRIFMDAGRILRPL 620
+IK + Q + I DAGR++RP+
Sbjct: 578 DIKNIQTQYPGIYILSDAGRLIRPV 602
>GENEDB_PFALCIPARUM|PF11_0358 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase,
beta subunit, putative" species:5833 "Plasmodium falciparum"
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=ISS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04563
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:AE014186 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 RefSeq:XP_001348029.1
ProteinModelPortal:Q8II17 EnsemblProtists:PF11_0358:mRNA
GeneID:810905 KEGG:pfa:PF11_0358 EuPathDB:PlasmoDB:PF3D7_1134700
HOGENOM:HOG000282443 OMA:ENINIDM ProtClustDB:CLSZ2433354
Uniprot:Q8II17
Length = 1517
Score = 341 (125.1 bits), Expect = 1.3e-55, Sum P(5) = 1.3e-55
Identities = 97/305 (31%), Positives = 153/305 (50%)
Query: 671 DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
D+ ++ P KF + EL + L + PF++H+ + R +YQ Q Q +G + N
Sbjct: 921 DMYEQIPQKFEYMELKETSFLSFLASLTPFSDHNQSPRNIYQCQM-LKQTMGIQSLNNVY 979
Query: 731 RVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQE 790
+++ PQ PL T + G + P +G NA+VA+ + GY+ E
Sbjct: 980 TFTNKIYRMITPQFPLVVTRDYEFYGVDNF------P-----SGTNAVVAILAYTGYDME 1028
Query: 791 DSLVMNRASLERGMFRSEHIRSYKAE-VDNKEMQVKRR----SSDDMVNFGKIQSKIGRV 845
D+L++N+AS +RG+FR+ HI YK E +D +++ ++ +N K +K
Sbjct: 1029 DALIINKASADRGIFRT-HI--YKTEFIDLQKVGESSNFVFGNNIRYLNNNKNNNKNLAY 1085
Query: 846 DS----LDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERG--MVQKVVLSSNDD 899
++ L+ DG P + + G + Y + G + + G V V + N+
Sbjct: 1086 ENKGKFLNKDGLPCVQQKITEGSPLYS-YINKGNELTTYESFRNHGEYFVDFVSIGKNNS 1144
Query: 900 GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 959
+ +VV LR R P +GDKF+S HGQKGV+ L QE+ PF GIVPDI+ NPH PS
Sbjct: 1145 NQ-VAVVKLRSTRQPQVGDKFASRHGQKGVVSRLFPQEDMPFAESGIVPDIIFNPHGIPS 1203
Query: 960 RQTPG 964
R T G
Sbjct: 1204 RMTIG 1208
Score = 281 (104.0 bits), Expect = 1.3e-55, Sum P(5) = 1.3e-55
Identities = 62/181 (34%), Positives = 94/181 (51%)
Query: 998 VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
+D + L G+ +GTE LY G G +++ IFIG +YQRL HM+ DK + R TGPV
Sbjct: 1328 IDYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRTGPV 1387
Query: 1058 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK---- 1113
LT QP+ +++ GGI+ GEMERD +I+HG + ++ER SD ++ +C KC
Sbjct: 1388 CNLTHQPLKGKRKHGGIRVGEMERDGIISHGCSFVINERFLMSSDGHECFVCPKCGLILS 1447
Query: 1114 -----NVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
N I C+ CD I+ +PY + L EL + +T++
Sbjct: 1448 PIMQFNTTGKIMKGRSIGGKSKMAVCKSCDVSCKIIF--IPYVIRYLLNELICLNVTIRL 1505
Query: 1169 D 1169
+
Sbjct: 1506 N 1506
Score = 84 (34.6 bits), Expect = 1.3e-55, Sum P(5) = 1.3e-55
Identities = 30/108 (27%), Positives = 47/108 (43%)
Query: 417 RDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
++LY D + +E S ++ + F TG S ++ SG V N L+ +
Sbjct: 529 KELYNDNYMF-LENCKSFSNTSSAILFFFKTGNISSENLHYQQKSGWVIAADEINNLRLI 587
Query: 477 VDLRRTRQQVQYTG-KVGDARYPHPSHWGKICFLSTPDGENCGLVKNL 523
+ R + + KV R WG IC + TPDG CGL+ +L
Sbjct: 588 TNFRAIHRGTFFQDVKVLTPRKLLGESWGFICPVHTPDGTPCGLLNHL 635
Score = 74 (31.1 bits), Expect = 1.3e-55, Sum P(5) = 1.3e-55
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 161 TTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKV 204
+T I G IP+M+ S+LC + + +KG+ GG+F++ G KV
Sbjct: 173 STTICAGHIPIMIMSNLCNLSNLNKKELAQKGEDQSLLGGFFVVSGRLKV 222
Score = 39 (18.8 bits), Expect = 1.3e-55, Sum P(5) = 1.3e-55
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 614 GRILRPLLVVENMGKIKSLEGKNYTFQALLDHGI 647
GR++RPLL N+ K K +E + ++Q + I
Sbjct: 743 GRLIRPLL---NL-KTKDIEFISPSYQPYISVAI 772
>UNIPROTKB|Q8II17 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014186 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
RefSeq:XP_001348029.1 ProteinModelPortal:Q8II17
EnsemblProtists:PF11_0358:mRNA GeneID:810905 KEGG:pfa:PF11_0358
EuPathDB:PlasmoDB:PF3D7_1134700 HOGENOM:HOG000282443 OMA:ENINIDM
ProtClustDB:CLSZ2433354 Uniprot:Q8II17
Length = 1517
Score = 341 (125.1 bits), Expect = 1.3e-55, Sum P(5) = 1.3e-55
Identities = 97/305 (31%), Positives = 153/305 (50%)
Query: 671 DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
D+ ++ P KF + EL + L + PF++H+ + R +YQ Q Q +G + N
Sbjct: 921 DMYEQIPQKFEYMELKETSFLSFLASLTPFSDHNQSPRNIYQCQM-LKQTMGIQSLNNVY 979
Query: 731 RVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQE 790
+++ PQ PL T + G + P +G NA+VA+ + GY+ E
Sbjct: 980 TFTNKIYRMITPQFPLVVTRDYEFYGVDNF------P-----SGTNAVVAILAYTGYDME 1028
Query: 791 DSLVMNRASLERGMFRSEHIRSYKAE-VDNKEMQVKRR----SSDDMVNFGKIQSKIGRV 845
D+L++N+AS +RG+FR+ HI YK E +D +++ ++ +N K +K
Sbjct: 1029 DALIINKASADRGIFRT-HI--YKTEFIDLQKVGESSNFVFGNNIRYLNNNKNNNKNLAY 1085
Query: 846 DS----LDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERG--MVQKVVLSSNDD 899
++ L+ DG P + + G + Y + G + + G V V + N+
Sbjct: 1086 ENKGKFLNKDGLPCVQQKITEGSPLYS-YINKGNELTTYESFRNHGEYFVDFVSIGKNNS 1144
Query: 900 GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 959
+ +VV LR R P +GDKF+S HGQKGV+ L QE+ PF GIVPDI+ NPH PS
Sbjct: 1145 NQ-VAVVKLRSTRQPQVGDKFASRHGQKGVVSRLFPQEDMPFAESGIVPDIIFNPHGIPS 1203
Query: 960 RQTPG 964
R T G
Sbjct: 1204 RMTIG 1208
Score = 281 (104.0 bits), Expect = 1.3e-55, Sum P(5) = 1.3e-55
Identities = 62/181 (34%), Positives = 94/181 (51%)
Query: 998 VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
+D + L G+ +GTE LY G G +++ IFIG +YQRL HM+ DK + R TGPV
Sbjct: 1328 IDYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRTGPV 1387
Query: 1058 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK---- 1113
LT QP+ +++ GGI+ GEMERD +I+HG + ++ER SD ++ +C KC
Sbjct: 1388 CNLTHQPLKGKRKHGGIRVGEMERDGIISHGCSFVINERFLMSSDGHECFVCPKCGLILS 1447
Query: 1114 -----NVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
N I C+ CD I+ +PY + L EL + +T++
Sbjct: 1448 PIMQFNTTGKIMKGRSIGGKSKMAVCKSCDVSCKIIF--IPYVIRYLLNELICLNVTIRL 1505
Query: 1169 D 1169
+
Sbjct: 1506 N 1506
Score = 84 (34.6 bits), Expect = 1.3e-55, Sum P(5) = 1.3e-55
Identities = 30/108 (27%), Positives = 47/108 (43%)
Query: 417 RDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
++LY D + +E S ++ + F TG S ++ SG V N L+ +
Sbjct: 529 KELYNDNYMF-LENCKSFSNTSSAILFFFKTGNISSENLHYQQKSGWVIAADEINNLRLI 587
Query: 477 VDLRRTRQQVQYTG-KVGDARYPHPSHWGKICFLSTPDGENCGLVKNL 523
+ R + + KV R WG IC + TPDG CGL+ +L
Sbjct: 588 TNFRAIHRGTFFQDVKVLTPRKLLGESWGFICPVHTPDGTPCGLLNHL 635
Score = 74 (31.1 bits), Expect = 1.3e-55, Sum P(5) = 1.3e-55
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 161 TTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKV 204
+T I G IP+M+ S+LC + + +KG+ GG+F++ G KV
Sbjct: 173 STTICAGHIPIMIMSNLCNLSNLNKKELAQKGEDQSLLGGFFVVSGRLKV 222
Score = 39 (18.8 bits), Expect = 1.3e-55, Sum P(5) = 1.3e-55
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 614 GRILRPLLVVENMGKIKSLEGKNYTFQALLDHGI 647
GR++RPLL N+ K K +E + ++Q + I
Sbjct: 743 GRLIRPLL---NL-KTKDIEFISPSYQPYISVAI 772
>UNIPROTKB|I3LGN1 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:CU914657
Ensembl:ENSSSCT00000028672 OMA:MSYEGYN Uniprot:I3LGN1
Length = 425
Score = 566 (204.3 bits), Expect = 8.2e-54, P = 8.2e-54
Identities = 151/442 (34%), Positives = 218/442 (49%)
Query: 739 LFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRA 798
L YPQ+P+ +T + ++ +L GQNA VAV + GY+ ED+LV+N+A
Sbjct: 4 LAYPQKPMVKTKTIE-----------LIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKA 52
Query: 799 SLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGA 858
SL+RG R ++ K + Q + +++ + I R + LD DG G
Sbjct: 53 SLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLD-AATRKPIWRHEILDADGICSPGE 111
Query: 859 NLQSGDIVIGKYADS-------GA---------DHSIKLKHTERGMVQKVVLSSNDDGKN 902
+++ +++ K + G+ D I K ++KV++SSN +
Sbjct: 112 KVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAF 171
Query: 903 FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
+ LRQ R P +GDKFSS HGQKGV G + QE+ PF GI PDI++NPH FPSR T
Sbjct: 172 LIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMT 231
Query: 963 PGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGR 1022
G+ G Y T F V + E L R G++ G + + G
Sbjct: 232 VGKLIELLAGKAGVL------DGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGI 285
Query: 1023 TGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1082
TGE + + I+ GP +YQ+L HM DK+ R GP LTRQP R R GG++ GEMERD
Sbjct: 286 TGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERD 345
Query: 1083 CLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDD 1142
CLI +GA+ L ERL SD++++ +C +C + +C C S
Sbjct: 346 CLIGYGASMLLLERLMISSDAFEVDVCGQCGLLG-------------YSGWCHYCKSSCH 392
Query: 1143 IVKANVPYGAKLLCQELFSMGI 1164
+ +PY KLL QEL SM I
Sbjct: 393 VSSLRIPYACKLLFQELQSMNI 414
>UNIPROTKB|F8VRE2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR015712
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC009721 GO:GO:0032549 EMBL:AC078992 EMBL:AC080012
HGNC:HGNC:30348 IPI:IPI01022248 ProteinModelPortal:F8VRE2
SMR:F8VRE2 Ensembl:ENST00000551370 ArrayExpress:F8VRE2 Bgee:F8VRE2
Uniprot:F8VRE2
Length = 676
Score = 437 (158.9 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 162/583 (27%), Positives = 256/583 (43%)
Query: 111 PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIP 170
P RL++MTYS+ + V ++ YT+ G ++ I+ + IGR+P
Sbjct: 99 PHECRLRDMTYSAPITVDIE---YTR----------GSQRIIRNA--------LPIGRMP 137
Query: 171 VMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS----N 220
+M++S C + G + +C D GGYFI+KG EKV + QEQ+ R+ V
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKG 197
Query: 221 SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSD 280
++G +V + K++R +M+ +K G L LS +IPI I+F A+GV SD
Sbjct: 198 AVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRHNTLSEDIPIVIIFKAMGVESD 248
Query: 281 KEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF----PPG 336
+EIV +I T E ++ S+ + K F + ALKY+ ++ P
Sbjct: 249 QEIVQMIG-TEEH--VMAAFGPSLEECQ-KAQIFTQ-MQALKYIGNKVRRQRMWGGGPKK 303
Query: 337 ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR--------KCDNRDDFRNKX 388
EE L S T + + KC+ A RR K D+RD + NK
Sbjct: 304 TKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKR 361
Query: 389 XXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDASILTNGLSRAFST 447
+ M K + + R + + ++ +TNG+ A ST
Sbjct: 362 LELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAIST 421
Query: 448 GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
G WS + +R G+ L R + + L + R Q + T KV R PS WG +C
Sbjct: 422 GNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLC 480
Query: 508 FLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL----ADDASYSLGGKFK 562
TP+GE CGLVKNL + ++T + + PI + N G+E + ++ SY F
Sbjct: 481 PSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP--NVFL 538
Query: 563 VFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLV 622
VF++G+ +GV +D V+ V I + V I D GR+ RP ++
Sbjct: 539 VFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYII 598
Query: 623 VENMGKI---KSLE--GKNY-TFQALLDHGIIELVGTEEEEDC 659
V+ K +E + Y F+ L ++E + EE DC
Sbjct: 599 VKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDC 641
Score = 70 (29.7 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 30/119 (25%), Positives = 54/119 (45%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
+F GLV I+S+N FI ++K + E + DP W +Y ++ G
Sbjct: 32 AFLKVKGLVKQHIDSFNYFINVEIKKIMKA-NEKVTSDA-DPM------WYLKYLNIYVG 83
Query: 90 QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
+++ SF + P RL++MTYS+ + V +++ +Q R+ + GR
Sbjct: 84 LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEYTRGSQ-RIIRNALPIGR 135
>TIGR_CMR|CHY_2318 [details] [associations]
symbol:CHY_2318 "DNA-directed RNA polymerase, beta
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 HOGENOM:HOG000218611
OMA:FMTWEGY RefSeq:YP_361127.1 ProteinModelPortal:Q3A9Q7
STRING:Q3A9Q7 PRIDE:Q3A9Q7 GeneID:3728817 KEGG:chy:CHY_2318
PATRIC:21277705 BioCyc:CHYD246194:GJCN-2317-MONOMER Uniprot:Q3A9Q7
Length = 1132
Score = 308 (113.5 bits), Expect = 4.5e-37, Sum P(8) = 4.5e-37
Identities = 84/245 (34%), Positives = 122/245 (49%)
Query: 866 VIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSV-------VSLRQVRSPCLGD 918
+ G+ A D S+++ H E G V V + S ++G S V + Q R +GD
Sbjct: 791 IFGEKAREVRDTSLRVPHGESGKVVDVKVFSRENGDELSPGVNMLVRVYIAQKRKISVGD 850
Query: 919 KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXX 978
K + HG KGV+ + +E+ PF G +IV+NP PSR GQ
Sbjct: 851 KMAGRHGNKGVVARILPEEDMPFLPDGTPVEIVLNPLGVPSRMNIGQILECHLGWAAKAL 910
Query: 979 XXXXCSGLKRYATP-FATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTF 1037
G+ ATP F + + I E L +AG + G + DGRTGE S + +G +
Sbjct: 911 ------GIN-VATPIFNGATEEDIFEALRKAGLPEDGKIEVRDGRTGEPFDSRVTVGYVY 963
Query: 1038 YQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERL 1097
+L H+ +DK+ R+TGP +T+QP+ + +FGG +FGEME L A+GAA L E L
Sbjct: 964 MLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEIL 1023
Query: 1098 FTLSD 1102
SD
Sbjct: 1024 TIKSD 1028
Score = 124 (48.7 bits), Expect = 4.5e-37, Sum P(8) = 4.5e-37
Identities = 32/105 (30%), Positives = 56/105 (53%)
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
EL G+N +VA GYN ED+++++ ++ +F S HI Y+ + + ++ + +
Sbjct: 679 ELALGKNVLVAYMPWEGYNYEDAILISEKLVKEDVFTSIHIEEYECDARDTKLGPEEITR 738
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG 874
D + N G+ K LD+ G IGA ++ GDI++GK G
Sbjct: 739 D-IPNVGEDALK-----DLDERGIIRIGAEVRPGDILVGKVTPKG 777
Score = 85 (35.0 bits), Expect = 4.5e-37, Sum P(8) = 4.5e-37
Identities = 34/161 (21%), Positives = 65/161 (40%)
Query: 363 YMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGD 422
Y ++ LL G+ K D+ D N+ ++ +A +R+ + +R D
Sbjct: 318 YTIRYLLGLMRGQGKVDDIDHLGNRRLRSVGELLQNQFRIGLARM-ERVVR--ERMTIQD 374
Query: 423 RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
+ ++ + + F + S +T + A L L L +
Sbjct: 375 ADSLTPQVLINTRPIVAAIKEFFGSSQLSQFMDQTNPL----AELTHKRRLSALGPGGLS 430
Query: 483 RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNL 523
R++ + + R H SH+G++C + TP+G N GL+ NL
Sbjct: 431 RERAGF-----EVRDVHHSHYGRMCPIETPEGPNIGLIGNL 466
Score = 55 (24.4 bits), Expect = 4.5e-37, Sum P(8) = 4.5e-37
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
G++I + VP K+L +EL S+G+ +K T+
Sbjct: 1043 GENIPEPGVPESFKVLIKELQSLGLDVKVLTD 1074
Score = 51 (23.0 bits), Expect = 4.5e-37, Sum P(8) = 4.5e-37
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 676 KPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
+P K ++ + ++ +IPF HD A R L
Sbjct: 539 EPSKVDFVDVSPKQVFSVATSLIPFLEHDDANRAL 573
Score = 43 (20.2 bits), Expect = 4.5e-37, Sum P(8) = 4.5e-37
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 194 GYFIIKGAEKVFVAQ 208
G FI GAE+V ++Q
Sbjct: 120 GTFIFNGAERVVISQ 134
Score = 43 (20.2 bits), Expect = 4.5e-37, Sum P(8) = 4.5e-37
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 265 EIPIWILFFALGVSSDKEIVNLID 288
++P+ +L ALG S I L D
Sbjct: 186 KLPVTVLLKALGYESKGRIAELFD 209
Score = 39 (18.8 bits), Expect = 4.5e-37, Sum P(8) = 4.5e-37
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 39 LVSHQINSYNEFIKNGLQKAF 59
L+ Q SY F+ GL++ F
Sbjct: 26 LIEIQKKSYQWFLDEGLREVF 46
>TIGR_CMR|DET_0603 [details] [associations]
symbol:DET_0603 "DNA-directed RNA polymerase, beta
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 OMA:FMTWEGY
RefSeq:YP_181345.1 ProteinModelPortal:Q3Z8V4 STRING:Q3Z8V4
PRIDE:Q3Z8V4 GeneID:3230060 KEGG:det:DET0603 PATRIC:21608277
BioCyc:DETH243164:GJNF-604-MONOMER Uniprot:Q3Z8V4
Length = 1272
Score = 181 (68.8 bits), Expect = 4.1e-34, Sum P(7) = 4.1e-34
Identities = 39/89 (43%), Positives = 53/89 (59%)
Query: 1014 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1073
G L DGRTGE + +G + +LIH+ EDKV R TGP +++QP+ + +FGG
Sbjct: 1067 GKSVLRDGRTGETFDQPVTVGNMYILKLIHLVEDKVHARATGPYSLISQQPLGGKAQFGG 1126
Query: 1074 IKFGEMERDCLIAHGAAANLHERLFTLSD 1102
+FGEME + A+G A NL E L SD
Sbjct: 1127 QRFGEMEVWAMYAYGTAHNLQEMLTIKSD 1155
Score = 138 (53.6 bits), Expect = 4.1e-34, Sum P(7) = 4.1e-34
Identities = 34/107 (31%), Positives = 52/107 (48%)
Query: 866 VIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSV-------VSLRQVRSPCLGD 918
+ G+ A D S+++ H E G V V + S ++G + V + Q R +GD
Sbjct: 833 IFGEKAREVKDTSLRMPHGEWGKVINVRVFSRENGDDLPARVNKWVQVWVAQKRKVSVGD 892
Query: 919 KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
K + HG KGV+ + E+ P+ G D+V+NP PSR GQ
Sbjct: 893 KLAGRHGNKGVISIIAPVEDMPYLPDGTPVDVVLNPIGVPSRMNLGQ 939
Score = 119 (46.9 bits), Expect = 4.1e-34, Sum P(7) = 4.1e-34
Identities = 32/105 (30%), Positives = 55/105 (52%)
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
EL GQN +VA G+N ED+++++ + F S HI ++ E + ++ + +
Sbjct: 721 ELALGQNCVVAFMSWQGFNYEDAIILSERLVREDAFTSIHITKHELEAHDTKLGGEEITR 780
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG 874
D + N G+ +S + LD+DG IGA + DI++GK G
Sbjct: 781 D-IPNVGE-ES----LRELDEDGIIRIGAEVGPDDILVGKITPKG 819
Score = 90 (36.7 bits), Expect = 4.1e-34, Sum P(7) = 4.1e-34
Identities = 31/125 (24%), Positives = 57/125 (45%)
Query: 467 LGRANPLQTLVDLRRTRQQVQ---YTGKVG-DARYPHPSHWGKICFLSTPDGENCGLVKN 522
+ + NPL + + RR + G D R H SH+G+IC + TP+G N GL+ +
Sbjct: 399 MDQTNPLAEITNKRRLSAMGPGGLSRERAGFDVRDVHYSHYGRICPIETPEGPNIGLIGS 458
Query: 523 LGVT------GLVSTSILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDS 576
L G V T + ++ +L N+ + + + ++ K KV + V +++
Sbjct: 459 LATYSRINRYGFVETPYRK-VYSKLKNNDKKLVGLKLAAAVSDKDKVLASAGSV-VSEEN 516
Query: 577 LSFVS 581
+S
Sbjct: 517 FKLIS 521
Score = 60 (26.2 bits), Expect = 4.1e-34, Sum P(7) = 4.1e-34
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
G+D+++ VP K+L +EL S+G+ ++ E
Sbjct: 1170 GEDVIQPGVPESFKVLVKELQSLGLAVEVINE 1201
Score = 55 (24.4 bits), Expect = 4.1e-34, Sum P(7) = 4.1e-34
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 677 PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
P K + ++ + ++ +IPF HD A R L
Sbjct: 582 PEKIDYMDVSPKQIFSVAASLIPFLEHDDANRAL 615
Score = 55 (24.4 bits), Expect = 4.1e-34, Sum P(7) = 4.1e-34
Identities = 29/103 (28%), Positives = 44/103 (42%)
Query: 194 GYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDM--SKFEDIK 251
G FI G E+V V+Q L R S + +T++ R L+ + E
Sbjct: 127 GTFITSGTERVVVSQ----LLR---SPGVYFTISDDPATGRPLCHTNLIPSRGAWLEFET 179
Query: 252 GGEKVLSVYFLST-EIPIWILFFALGVSSDKEIVNLIDFTCED 293
V+SV +IP+ L A+G S D +I+NL + D
Sbjct: 180 SNRDVISVKIDGRRKIPVSTLLRAIGYSDDLDILNLFEVIDND 222
>TIGR_CMR|BA_0102 [details] [associations]
symbol:BA_0102 "DNA-directed RNA polymerase, beta subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 RefSeq:NP_842670.1
RefSeq:YP_026388.1 RefSeq:YP_052605.1 ProteinModelPortal:Q81VT8
IntAct:Q81VT8 PRIDE:Q81VT8 DNASU:1086075
EnsemblBacteria:EBBACT00000010978 EnsemblBacteria:EBBACT00000018107
EnsemblBacteria:EBBACT00000023445 GeneID:1086075 GeneID:2820986
GeneID:2850888 KEGG:ban:BA_0102 KEGG:bar:GBAA_0102 KEGG:bat:BAS0102
HOGENOM:HOG000218611 OMA:FMTWEGY BioCyc:BANT260799:GJAJ-113-MONOMER
BioCyc:BANT261594:GJ7F-115-MONOMER Uniprot:Q81VT8
Length = 1177
Score = 279 (103.3 bits), Expect = 6.7e-34, Sum P(7) = 6.7e-34
Identities = 80/245 (32%), Positives = 118/245 (48%)
Query: 866 VIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNF--SVVSL-R----QVRSPCLGD 918
+ G+ A D S+++ H G++ V + + +DG V L R Q R GD
Sbjct: 863 IFGEKAREVRDTSLRVPHGGGGIILDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGD 922
Query: 919 KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXX 978
K + HG KGV+ + +E+ P+ G DI++NP PSR GQ
Sbjct: 923 KMAGRHGNKGVISRILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYL 982
Query: 979 XXXXCSGLKRYATP-FATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTF 1037
G+ ATP F + + + AG + LYDGRTGE + + +G +
Sbjct: 983 ------GI-HIATPVFDGAREEDVWGTIEEAGMANDAKTILYDGRTGEPFDNRVSVGVMY 1035
Query: 1038 YQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERL 1097
+L HM +DK+ R+TGP +T+QP+ + +FGG +FGEME L A+GAA L E L
Sbjct: 1036 MIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEIL 1095
Query: 1098 FTLSD 1102
SD
Sbjct: 1096 TVKSD 1100
Score = 123 (48.4 bits), Expect = 6.7e-34, Sum P(7) = 6.7e-34
Identities = 29/105 (27%), Positives = 57/105 (54%)
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
EL G+N +V GYN ED+++M+ ++ ++ S HI Y++E + ++ + +
Sbjct: 751 ELALGRNVLVGFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITR 810
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG 874
D + N G+ + +LD+ G +GA ++ GD+++GK G
Sbjct: 811 D-IPNVGE-----DALRNLDERGIIRVGAEVKDGDLLVGKVTPKG 849
Score = 81 (33.6 bits), Expect = 6.7e-34, Sum P(7) = 6.7e-34
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 467 LGRANPLQTLVDLRR---------TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENC 517
+ + NPL L RR TR++ + +V D Y SH+G++C + TP+G N
Sbjct: 470 MDQTNPLAELTHKRRLSALGPGGLTRERAGF--EVRDVHY---SHYGRMCPIETPEGPNI 524
Query: 518 GLVKNL 523
GL+ +L
Sbjct: 525 GLINSL 530
Score = 71 (30.1 bits), Expect = 6.7e-34, Sum P(7) = 6.7e-34
Identities = 29/96 (30%), Positives = 47/96 (48%)
Query: 194 GYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGG 253
G F+I GAE+V V+Q L R S S+ ++ KR + + + + +
Sbjct: 123 GTFVINGAERVIVSQ----LVR---SPSVYYSGKVDKNGKRGFTATVIPNRGAWLEYETD 175
Query: 254 EK-VLSVYFLST-EIPIWILFFALGVSSDKEIVNLI 287
K V+ V T ++P+ +L ALG SD+EI L+
Sbjct: 176 AKDVVYVRIDRTRKLPVTVLLRALGFGSDQEITELL 211
Score = 52 (23.4 bits), Expect = 6.7e-34, Sum P(7) = 6.7e-34
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKF----DTE 1171
G+++ + VP K+L +EL S+G+ +K DTE
Sbjct: 1115 GENVPEPGVPESFKVLIKELQSLGMDVKMMSSDDTE 1150
Score = 41 (19.5 bits), Expect = 6.7e-34, Sum P(7) = 6.7e-34
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 39 LVSHQINSYNEFIKNGLQKAF 59
L+ Q +SY F+ GL++ F
Sbjct: 29 LIEIQTSSYQWFLDEGLREMF 49
Score = 38 (18.4 bits), Expect = 9.2e-31, Sum P(5) = 9.2e-31
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 48 NEFIKNGLQKA-FDSFGETIVEPGYDPSKKGE 78
NE++ N L+K DS + ++E Y+ + GE
Sbjct: 214 NEYLSNTLEKDNTDSTEKALLEI-YERLRPGE 244
Score = 37 (18.1 bits), Expect = 6.7e-34, Sum P(7) = 6.7e-34
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 152 IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK 185
I KE + ++ +G P+M ++ + G E+
Sbjct: 99 INKETGEVKEQDVFMGDFPLMTETGTFVINGAER 132
>TIGR_CMR|CBU_0231 [details] [associations]
symbol:CBU_0231 "DNA-directed RNA polymerase, beta
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CP001019 EMBL:U86688 GenomeReviews:CP001019_GR eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_002304193.1 ProteinModelPortal:B6J270 STRING:B6J270
PRIDE:B6J270 GeneID:7014190 KEGG:cbg:CbuG_1774 PATRIC:17914647
OMA:HANEEIT Uniprot:B6J270
Length = 1375
Score = 188 (71.2 bits), Expect = 2.7e-32, Sum P(6) = 2.7e-32
Identities = 48/135 (35%), Positives = 69/135 (51%)
Query: 988 RYATPFATPSVDAITEQ-----LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
R P ++P D TE+ L A G LYDGRTG+ + +G + +L
Sbjct: 1210 RKGVPISSPVFDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVGYMYMLKLN 1269
Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
H+ +DK+ R+TG +T+QP+ + +FGG +FGEME L A+GAA L E L SD
Sbjct: 1270 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1329
Query: 1103 SYQMHICRKCKNVAN 1117
R KN+ +
Sbjct: 1330 DVAGRT-RMYKNIVD 1343
Score = 131 (51.2 bits), Expect = 2.7e-32, Sum P(6) = 2.7e-32
Identities = 34/105 (32%), Positives = 57/105 (54%)
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
EL GQN +VA GYN EDS++++ +E F + HI+ + + ++ + +S
Sbjct: 815 ELALGQNLLVAFMPWNGYNFEDSILISERLVEEDRFTTIHIQEFTCVARDTKLGPEEITS 874
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG 874
D + N G +S + + LD+ G IGA + +GDI++GK G
Sbjct: 875 D-IPNVG--ESALAK---LDESGIVHIGAEVNAGDILVGKVTPKG 913
Score = 104 (41.7 bits), Expect = 2.7e-32, Sum P(6) = 2.7e-32
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 917 GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
GDK + HG KGV+ + E+ P+ G DIV+NP PSR GQ
Sbjct: 1098 GDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLGVPSRMNIGQ 1146
Score = 83 (34.3 bits), Expect = 2.7e-32, Sum P(6) = 2.7e-32
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 494 DARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
+ R H +H+G++C + TP+G N GL+ +L V
Sbjct: 567 EVRDVHVTHYGRVCPIETPEGPNIGLINSLAV 598
Score = 70 (29.7 bits), Expect = 2.7e-32, Sum P(6) = 2.7e-32
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 104 GDEHDMFP-RHARLQNMTYSSRMKVKVQFQVYTQKRVTSDK-FKTGREQ--YIQKEVLSD 159
G E +F +L+ +TY++ +KV ++ +Y ++ K K +EQ Y+ + L
Sbjct: 92 GGESTLFDVEECKLRGLTYAAPLKVNMRLVIYDKEAPAGKKAIKDIKEQEVYMGEIPLMT 151
Query: 160 ETTNIIIGRIPVMVKSDLCWMKGV 183
ET +++I +V S L GV
Sbjct: 152 ETGSLVINGTERVVVSQLHRSPGV 175
Score = 65 (27.9 bits), Expect = 2.7e-32, Sum P(6) = 2.7e-32
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 677 PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNP 728
P K + ++ ++ ++ +IPF HD A R L S QA+ PT P
Sbjct: 668 PDKINYMDVSPRQIVSVAAALIPFLEHDDANRALMGSNMQR-QAV--PTIRP 716
Score = 43 (20.2 bits), Expect = 1.7e-17, Sum P(6) = 1.7e-17
Identities = 29/159 (18%), Positives = 57/159 (35%)
Query: 1018 LYDGRTGEMVRSLIFIG--PTFYQRLIHMSEDKVKFRNT---GPVHPLTRQPVADRKRFG 1072
++DG T E ++ L+ + PT Q ++ KF + G ++ L + D K
Sbjct: 1219 VFDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVGYMYMLKLNHLVDDKMHA 1278
Query: 1073 GIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXP 1132
G G A + F + + + + ++
Sbjct: 1279 R-STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTRM 1337
Query: 1133 YCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
Y I D GD + A +P +L +E+ S+ I + + +
Sbjct: 1338 YKNIVD-GDHRMDAGMPESFNVLVKEIRSLAIDIGLEND 1375
Score = 40 (19.1 bits), Expect = 3.5e-23, Sum P(6) = 3.5e-23
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 817 VDNKEMQVKRRSSD-DMVNFGKIQSKIGRVDSLDDD 851
VD+ + +RS D V+ +I ++ R ++ DDD
Sbjct: 731 VDSGVTVIAKRSGVIDSVDASRIVVRVDRKETEDDD 766
Score = 37 (18.1 bits), Expect = 5.7e-29, Sum P(6) = 5.7e-29
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 194 GYFIIKGAEKVFVAQ 208
G +I G E+V V+Q
Sbjct: 154 GSLVINGTERVVVSQ 168
>TIGR_CMR|CJE_0528 [details] [associations]
symbol:CJE_0528 "DNA-directed RNA polymerase, beta
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_178546.1 ProteinModelPortal:Q5HVY9
STRING:Q5HVY9 GeneID:3231289 KEGG:cjr:CJE0528 PATRIC:20042778
BioCyc:CJEJ195099:GJC0-543-MONOMER Uniprot:Q5HVY9
Length = 1378
Score = 200 (75.5 bits), Expect = 4.4e-32, Sum P(7) = 4.4e-32
Identities = 46/122 (37%), Positives = 69/122 (56%)
Query: 985 GLKRYATP-FATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
G+K ++TP F +++ ++ A G LYDGRTGE + + +G + +L H
Sbjct: 1210 GVK-FSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMYMLKLHH 1268
Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
+ ++KV R+TGP +T+QPV + FGG +FGEME L A+GAA L E L SD
Sbjct: 1269 LVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREMLTIKSDD 1328
Query: 1104 YQ 1105
+
Sbjct: 1329 VE 1330
Score = 118 (46.6 bits), Expect = 4.4e-32, Sum P(7) = 4.4e-32
Identities = 33/106 (31%), Positives = 56/106 (52%)
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVK-RRS 828
EL G+NA++A GYN ED++V++ + F S HI Y+ E++ +E++
Sbjct: 804 ELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHI--YEKEIEARELKDGIEEI 861
Query: 829 SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG 874
+ D+ N K V LD+ G IG +++ G I++GK + G
Sbjct: 862 TKDIPNV-----KEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKG 902
Score = 101 (40.6 bits), Expect = 4.4e-32, Sum P(7) = 4.4e-32
Identities = 41/194 (21%), Positives = 84/194 (43%)
Query: 366 KCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAK---ALQRDLYGD 422
K L++ +G+ D+RD N+ + +A +K + +L DL D
Sbjct: 443 KYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADL--D 500
Query: 423 RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
+ V P + ++ ++T + F+ G S +T +S + L L +
Sbjct: 501 K-VMPYDL-INPKMITTTIIEFFTGGQLSQFMDQTNPLSEVT----HKRRLSALGEGGLV 554
Query: 483 RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQL 541
+++ + + R H +H+G+IC + TP+G+N GL+ L V+ +E + ++
Sbjct: 555 KERAGF-----EVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKV 609
Query: 542 FNSGMEKLADDASY 555
N K+ ++ Y
Sbjct: 610 VNG---KVTNEVVY 620
Score = 98 (39.6 bits), Expect = 4.4e-32, Sum P(7) = 4.4e-32
Identities = 25/81 (30%), Positives = 39/81 (48%)
Query: 890 QKVVLSSNDDGKNFSVVSLRQV-----RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQ 944
+K+ + DD V+ L +V R +GDK + HG KG++ + + + P+
Sbjct: 1060 EKLEILEKDDILPSGVIKLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPN 1119
Query: 945 GIVPDIVINPHAFPSRQTPGQ 965
G DI +NP PSR GQ
Sbjct: 1120 GKSVDIALNPLGVPSRMNIGQ 1140
Score = 62 (26.9 bits), Expect = 4.4e-32, Sum P(7) = 4.4e-32
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 684 ELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQL 739
+L ++G++ +IPF HD A R L S QA+ T + I V T Q+
Sbjct: 669 DLCSGMVVGVAASLIPFLEHDDANRALMGSNMQR-QAVPLLTASAPI-VGTGMEQI 722
Score = 62 (26.9 bits), Expect = 4.4e-32, Sum P(7) = 4.4e-32
Identities = 20/76 (26%), Positives = 38/76 (50%)
Query: 112 RHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF--KTGREQ--YIQKEVLSDETTNIIIG 167
R + +TYS +K+K++ ++ + T +K K +EQ YI++ L + + II
Sbjct: 84 RECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIIN 143
Query: 168 RIPVMVKSDLCWMKGV 183
+ +V + L GV
Sbjct: 144 GVERVVVNQLHRSPGV 159
Score = 38 (18.4 bits), Expect = 4.4e-32, Sum P(7) = 4.4e-32
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 265 EIPIWILFFALGVSSDKEIVNL 286
++P+ +LF ALG ++I+ L
Sbjct: 206 KVPVTMLFRALGYKK-QDIIKL 226
Score = 38 (18.4 bits), Expect = 3.2e-22, Sum P(4) = 3.2e-22
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 742 PQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
PQ L +S +GKP Y + R Y+
Sbjct: 63 PQNRLSLEYVSSEIGKPKYTIRECMERGLTYS 94
>UNIPROTKB|P60281 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:246196 "Mycobacterium smegmatis str. MC2 155" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01321 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 InterPro:IPR019462
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF10385 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:CP000480 EMBL:CP001663 GenomeReviews:CP000480_GR GO:GO:0006351
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
HOGENOM:HOG000218611 OMA:FMTWEGY EMBL:AJ605718
RefSeq:YP_006566096.1 RefSeq:YP_885753.1 ProteinModelPortal:P60281
IntAct:P60281 STRING:P60281 EnsemblBacteria:EBMYCT00000043175
GeneID:13429143 GeneID:4535217 KEGG:msm:MSMEG_1367 PATRIC:18075189
BioCyc:MSME246196:GJ4Y-1367-MONOMER Uniprot:P60281
Length = 1169
Score = 172 (65.6 bits), Expect = 2.9e-31, Sum P(6) = 2.9e-31
Identities = 36/89 (40%), Positives = 54/89 (60%)
Query: 1014 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1073
G L+DGR+GE + +G + +L H+ +DK+ R+TGP +T+QP+ + +FGG
Sbjct: 997 GKSTLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGG 1056
Query: 1074 IKFGEMERDCLIAHGAAANLHERLFTLSD 1102
+FGEME + A+GAA L E L SD
Sbjct: 1057 QRFGEMECWAMQAYGAAYTLQELLTIKSD 1085
Score = 142 (55.0 bits), Expect = 2.9e-31, Sum P(6) = 2.9e-31
Identities = 40/107 (37%), Positives = 52/107 (48%)
Query: 866 VIGKYADSGADHSIKLKHTERGMVQKV-VLSSNDD-----GKNFSV-VSLRQVRSPCLGD 918
+ G+ A D S+K+ H E G V + V S DD G N V V + Q R GD
Sbjct: 815 IFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGD 874
Query: 919 KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
K + HG KGV+G + E+ PF G DI++N H P R GQ
Sbjct: 875 KLAGRHGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGVPRRMNIGQ 921
Score = 116 (45.9 bits), Expect = 2.9e-31, Sum P(6) = 2.9e-31
Identities = 29/106 (27%), Positives = 58/106 (54%)
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS- 828
E+ G+N +VA+ G+N ED+++++ +E + S HI + E+D ++ ++
Sbjct: 703 EMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEH--EIDARDTKLGAEEI 760
Query: 829 SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG 874
+ D+ N + ++ + LD+ G IGA ++ GDI++GK G
Sbjct: 761 TRDIPN---VSDEV--LADLDERGIVRIGAEVRDGDILVGKVTPKG 801
Score = 93 (37.8 bits), Expect = 2.9e-31, Sum P(6) = 2.9e-31
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 494 DARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFN 543
+ R HPSH+G++C + TP+G N GL+ +L V V+ +E + ++ N
Sbjct: 462 EVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVEN 512
Score = 57 (25.1 bits), Expect = 2.9e-31, Sum P(6) = 2.9e-31
Identities = 35/152 (23%), Positives = 59/152 (38%)
Query: 58 AFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQ 117
+F E + PG + EW S R+ Q +D+ G +E + + ++
Sbjct: 31 SFAKLREPLEVPGLLDVQTDSFEWLVGSDRWRQAAIDRGEENPVGGLEE--VLAELSPIE 88
Query: 118 NMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDL 177
+ +S M + + + + + D+ K Y ++ E N G I KS
Sbjct: 89 D--FSGSMSLSFSDPRFDEVKASVDECKDKDMTYAAPLFVTAEFINNNTGEI----KSQT 142
Query: 178 CWMKGVEKGDCDF-DHGGYFIIKGAEKVFVAQ 208
+M GD G FII G E+V V+Q
Sbjct: 143 VFM-----GDFPMMTEKGTFIINGTERVVVSQ 169
Score = 47 (21.6 bits), Expect = 2.9e-31, Sum P(6) = 2.9e-31
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 690 LLGLSCGIIPFANHDHARRVL 710
++ ++ +IPF HD A R L
Sbjct: 577 MVSVATAMIPFLEHDDANRAL 597
Score = 38 (18.4 bits), Expect = 2.3e-29, Sum P(6) = 2.3e-29
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 135 TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGR-----IPVMVKSDLCW 179
T+K + S K GR +++ +V +T + I R + V++K+ L W
Sbjct: 186 TEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA-LGW 234
>TIGR_CMR|ECH_0952 [details] [associations]
symbol:ECH_0952 "DNA-directed RNA polymerase, beta
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
EMBL:AF389473 RefSeq:YP_507740.1 ProteinModelPortal:Q8KWX2
STRING:Q8KWX2 PRIDE:Q8KWX2 GeneID:3927386 KEGG:ech:ECH_0952
PATRIC:20577286 BioCyc:ECHA205920:GJNR-955-MONOMER Uniprot:Q8KWX2
Length = 1380
Score = 183 (69.5 bits), Expect = 3.9e-31, Sum P(6) = 3.9e-31
Identities = 44/118 (37%), Positives = 60/118 (50%)
Query: 985 GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
G+ A F P I+ L A G LYDGR GE + +G + +L H+
Sbjct: 1207 GVPMAAPVFEGPKDSQISNLLRLADLDVSGQVDLYDGRIGEKFDRKVTVGYIYMLKLHHL 1266
Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
+DK+ R+ GP +T+QP+ + FGG +FGEME L A+GAA L E L SD
Sbjct: 1267 VDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSD 1324
Score = 120 (47.3 bits), Expect = 3.9e-31, Sum P(6) = 3.9e-31
Identities = 68/314 (21%), Positives = 124/314 (39%)
Query: 363 YMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGD 422
+++K L+ G D+ D N+ ++ I +RM + D
Sbjct: 451 HVIKKLVLLRDGEGSVDDIDHLGNRRVRSVGEFIENQFRIGILRL-ERMIMDYMSSVNFD 509
Query: 423 RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
+ P ++ ++ +L L FS+ S +T +S + L L T
Sbjct: 510 NAM-PCDF-VNPKVLATVLKDFFSSSQLSQFMDQTNPLSEVT----HKRRLSALGPGGLT 563
Query: 483 RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQL 541
R++ + + R HP+H+G+IC + TP+G+N GL+ +L + ++ +E + ++
Sbjct: 564 RERAGF-----EVRDVHPTHYGRICPIETPEGQNIGLISSLAIYARINKHGFIESPYRKV 618
Query: 542 FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRD 601
+ G+ + D Y L + + D ++ FV V +KR+
Sbjct: 619 -DKGV--VTDKVEYLLAMQESNYYIADASATLDENNQFVDDMLYCRHDGNF---VMVKRE 672
Query: 602 ELQ----SEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQAL-LDHGIIELVGTEEE 656
E+ S +I A ++ P L EN ++L G N QA+ L L+GT E
Sbjct: 673 EVDYIDVSPKQIVSVAASLI-PFL--ENNDANRALMGSNMQRQAVPLLKADAPLIGTGME 729
Query: 657 EDCCTAWGIKYLLK 670
G L K
Sbjct: 730 SIVAAGSGTVVLAK 743
Score = 117 (46.2 bits), Expect = 3.9e-31, Sum P(6) = 3.9e-31
Identities = 39/137 (28%), Positives = 66/137 (48%)
Query: 736 SHQLFYPQRPLFRTMISDCL-GKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLV 794
+H QRPL + D + + + EL G+N +VA GYN EDS+V
Sbjct: 783 NHNTCINQRPLVKP--GDYVKANDVIADGSAIDQGELALGKNVLVAFMSWQGYNFEDSIV 840
Query: 795 MNRASLERGMFRSEHIRSYKAEVDNKEMQVKR--RSSDDMVNFGKIQSKIGRVDSLDDDG 852
++ +++ +F S HI ++ V + + ++ RS D +N + LDD G
Sbjct: 841 ISSEVVKKDVFTSIHIEEFECVVRDTTLGPEKIMRSVPD-INEDSLSH-------LDDVG 892
Query: 853 FPFIGANLQSGDIVIGK 869
+GA + +GDI++GK
Sbjct: 893 IVNVGAEVSAGDILVGK 909
Score = 96 (38.9 bits), Expect = 3.9e-31, Sum P(6) = 3.9e-31
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 917 GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
GDK + HG KGV+ + E+ P+ G DI++N PSR GQ
Sbjct: 1092 GDKMAGRHGNKGVISRIVPVEDMPYLEDGTPVDIILNSLGVPSRMNVGQ 1140
Score = 66 (28.3 bits), Expect = 3.9e-31, Sum P(6) = 3.9e-31
Identities = 32/148 (21%), Positives = 68/148 (45%)
Query: 39 LVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSF 98
L+ Q +SYN FI G+ + +S + I + + P + G A + F ++ +P +
Sbjct: 36 LIKIQRDSYNAFI--GIDQNTESGIKNIFQSMF-PIQDLLGR---AVLEFVSYSIGEPQY 89
Query: 99 FAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK-TGREQYIQKEVL 157
DE++ R +T+S +++ ++F V+ + V+ + K E+ +K +
Sbjct: 90 ------DEYECIKR-----GITFSVPIRIVLRFIVWKVQEVSFKEVKYVVDEETSEKSIK 138
Query: 158 SDETTNIIIGRIPVMVKSDLCWMKGVEK 185
+ + IG +P M + G+E+
Sbjct: 139 YIKEQEVSIGDLPTMTSHGTFIINGIER 166
Score = 48 (22.0 bits), Expect = 3.9e-31, Sum P(6) = 3.9e-31
Identities = 27/91 (29%), Positives = 42/91 (46%)
Query: 194 GYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFE-DIKG 252
G FII G E+V V+Q ++ + G T + R+I FE DIK
Sbjct: 157 GTFIINGIERVIVSQMHRS-PGVFFDSDKGKTYSSGKLIYSARIIPYRGSWLDFEFDIKD 215
Query: 253 GEKVLSVYFL---STEIPIWILFFALGVSSD 280
+L YF ++P+ +L ALG+S++
Sbjct: 216 ---IL--YFRIDRKRKLPVSLLLRALGLSNN 241
Score = 44 (20.5 bits), Expect = 1.9e-18, Sum P(5) = 1.9e-18
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 853 FPFIGANLQSGDIVIGKYADSGADHSI----KLKHTERGMVQKVVLSS 896
F + NLQ GD + G++ + G I + + E G ++L+S
Sbjct: 1082 FVAVKHNLQPGDKMAGRHGNKGVISRIVPVEDMPYLEDGTPVDIILNS 1129
Score = 43 (20.2 bits), Expect = 0.00027, Sum P(4) = 0.00027
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 810 IRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFP 854
+++Y A +EM + SDD+V KI I + DS + G P
Sbjct: 1306 LQAYGAAYTLQEMLTVK--SDDIVGRVKIYESIIKGDSNFECGIP 1348
Score = 39 (18.8 bits), Expect = 4.9e-23, Sum P(6) = 4.9e-23
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 690 LLGLSCGIIPFANHDHARRVLYQSQKHSSQAI 721
++ ++ +IPF ++ A R L S QA+
Sbjct: 684 IVSVAASLIPFLENNDANRALMGSNMQR-QAV 714
>UNIPROTKB|P0A8V2 [details] [associations]
symbol:rpoB "RNA polymerase, beta subunit" species:83333
"Escherichia coli K-12" [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016020
"membrane" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006351 EMBL:U00006 DrugBank:DB01045 PDB:3IYD
PDBsum:3IYD GO:GO:0003899 EMBL:V00339 PDB:3T72 PDBsum:3T72
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 PDB:3LU0 PDBsum:3LU0 KO:K03043
ProtClustDB:PRK00405 Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3
TIGRFAMs:TIGR02013 OMA:FMTWEGY EMBL:V00340 EMBL:U76222 EMBL:V00341
EMBL:M38292 EMBL:M38293 EMBL:M38287 EMBL:M38304 EMBL:U77436
EMBL:M38303 PIR:F65205 RefSeq:NP_418414.1 RefSeq:YP_491474.1
PDB:3LTI PDB:3TBI PDBsum:3LTI PDBsum:3TBI ProteinModelPortal:P0A8V2
SMR:P0A8V2 DIP:DIP-35777N IntAct:P0A8V2 MINT:MINT-1222430
SWISS-2DPAGE:P0A8V2 PaxDb:P0A8V2 PRIDE:P0A8V2
EnsemblBacteria:EBESCT00000000939 EnsemblBacteria:EBESCT00000000940
EnsemblBacteria:EBESCT00000000941 EnsemblBacteria:EBESCT00000017696
GeneID:12934478 GeneID:948488 KEGG:ecj:Y75_p3210 KEGG:eco:b3987
PATRIC:32123495 EchoBASE:EB0887 EcoGene:EG10894
BioCyc:EcoCyc:RPOB-MONOMER BioCyc:ECOL316407:JW3950-MONOMER
BioCyc:MetaCyc:RPOB-MONOMER BindingDB:P0A8V2 ChEMBL:CHEMBL1852
DrugBank:DB01220 EvolutionaryTrace:P0A8V2 Genevestigator:P0A8V2
Uniprot:P0A8V2
Length = 1342
Score = 192 (72.6 bits), Expect = 6.5e-31, Sum P(7) = 6.5e-31
Identities = 48/120 (40%), Positives = 65/120 (54%)
Query: 988 RYATPFATPSVDAITE----QLHRAG-FSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
R P ATP D E +L + G G RLYDGRTGE + +G + +L
Sbjct: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236
Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
H+ +DK+ R+TG +T+QP+ + +FGG +FGEME L A+GAA L E L SD
Sbjct: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296
Score = 115 (45.5 bits), Expect = 6.5e-31, Sum P(7) = 6.5e-31
Identities = 31/105 (29%), Positives = 53/105 (50%)
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
EL GQN VA GYN EDS++++ ++ F + HI+ + ++ + ++
Sbjct: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITA 852
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG 874
D + N G+ + LD+ G +IGA + GDI++GK G
Sbjct: 853 D-IPNVGE-----AALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891
Score = 105 (42.0 bits), Expect = 6.5e-31, Sum P(7) = 6.5e-31
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 917 GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
GDK + HG KGV+ + E+ P+ G DIV+NP PSR GQ
Sbjct: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111
Score = 96 (38.9 bits), Expect = 6.5e-31, Sum P(7) = 6.5e-31
Identities = 34/163 (20%), Positives = 70/163 (42%)
Query: 364 MVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDR 423
++K L+ +G+ + D+ D N+ +V + + + + L GD
Sbjct: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS---LGDL 484
Query: 424 -TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
T+ P + ++A ++ + F + S + +S I + L T
Sbjct: 485 DTLMPQDM-INAKPISAAVKEFFGSSQLSQFMDQNNPLSEIT----HKRRISALGPGGLT 539
Query: 483 RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
R++ + + R HP+H+G++C + TP+G N GL+ +L V
Sbjct: 540 RERAGF-----EVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577
Score = 65 (27.9 bits), Expect = 6.5e-31, Sum P(7) = 6.5e-31
Identities = 42/153 (27%), Positives = 73/153 (47%)
Query: 39 LVSHQINSYNEFIKN------GLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
L+S Q++S+ +FI+ GL+ AF S V P S G E +Y S R G+
Sbjct: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRS-----VFP--IQSYSGNSELQYVSYRLGE-- 77
Query: 93 LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSD-KFKTGREQY 151
P F D+ + +++ +TYS+ ++VK++ +Y ++ K +E Y
Sbjct: 78 ---PVF---------DV--QECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY 123
Query: 152 IQK-EVLSDETTNIIIGRIPVMVKSDLCWMKGV 183
+ + +++D T +I G V+V S L GV
Sbjct: 124 MGEIPLMTDNGTFVINGTERVIV-SQLHRSPGV 155
Score = 48 (22.0 bits), Expect = 6.5e-31, Sum P(7) = 6.5e-31
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 690 LLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
++ + +IPF HD A R L + QA+ P++R D
Sbjct: 660 VVSVGASLIPFLEHDDANRALMGANMQR-QAV------PTLRAD 696
Score = 46 (21.3 bits), Expect = 6.5e-31, Sum P(7) = 6.5e-31
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 1133 YCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
Y I D G+ ++ +P +L +E+ S+GI ++ + E
Sbjct: 1305 YKNIVD-GNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342
Score = 44 (20.5 bits), Expect = 8.0e-29, Sum P(7) = 8.0e-29
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 194 GYFIIKGAEKVFVAQ 208
G F+I G E+V V+Q
Sbjct: 134 GTFVINGTERVIVSQ 148
Score = 38 (18.4 bits), Expect = 3.7e-25, Sum P(7) = 3.7e-25
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 461 SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDAR 496
SGI++ + ++ L+D+R + +V +G+ R
Sbjct: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRR 452
>UNIPROTKB|P0A680 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0046677 GO:GO:0006351
EMBL:BX842574 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY EMBL:L27989 EMBL:U12205 EMBL:L05910 EMBL:AF143771
EMBL:AF146567 EMBL:AF147030 EMBL:AF147031 EMBL:AF147033
EMBL:AF147034 EMBL:S71246 PIR:F70535 RefSeq:NP_215181.1
RefSeq:NP_335107.1 RefSeq:YP_006514009.1 ProteinModelPortal:P0A680
SMR:P0A680 IntAct:P0A680 PRIDE:P0A680
EnsemblBacteria:EBMYCT00000001730 EnsemblBacteria:EBMYCT00000071499
GeneID:13318554 GeneID:888164 GeneID:925979 KEGG:mtc:MT0695
KEGG:mtu:Rv0667 KEGG:mtv:RVBD_0667 PATRIC:18123249
TubercuList:Rv0667 BindingDB:P0A680 ChEMBL:CHEMBL2006
Uniprot:P0A680
Length = 1178
Score = 173 (66.0 bits), Expect = 7.7e-30, Sum P(6) = 7.7e-30
Identities = 36/89 (40%), Positives = 54/89 (60%)
Query: 1014 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1073
G L+DGR+GE + +G + +L H+ +DK+ R+TGP +T+QP+ + +FGG
Sbjct: 1006 GKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGG 1065
Query: 1074 IKFGEMERDCLIAHGAAANLHERLFTLSD 1102
+FGEME + A+GAA L E L SD
Sbjct: 1066 QRFGEMECWAMQAYGAAYTLQELLTIKSD 1094
Score = 140 (54.3 bits), Expect = 7.7e-30, Sum P(6) = 7.7e-30
Identities = 38/107 (35%), Positives = 52/107 (48%)
Query: 866 VIGKYADSGADHSIKLKHTERGMVQKVVLSSNDD------GKNFSV-VSLRQVRSPCLGD 918
+ G+ A D S+K+ H E G V + + S +D G N V V + Q R GD
Sbjct: 824 IFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGD 883
Query: 919 KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
K + HG KGV+G + E+ PF G DI++N H P R GQ
Sbjct: 884 KLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPRRMNIGQ 930
Score = 117 (46.2 bits), Expect = 7.7e-30, Sum P(6) = 7.7e-30
Identities = 30/106 (28%), Positives = 58/106 (54%)
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS- 828
E+ G+N +VA+ G+N ED+++++ +E + S HI + E+D ++ ++
Sbjct: 712 EMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEH--EIDARDTKLGAEEI 769
Query: 829 SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG 874
+ D+ N I ++ + LD+ G IGA ++ GDI++GK G
Sbjct: 770 TRDIPN---ISDEV--LADLDERGIVRIGAEVRDGDILVGKVTPKG 810
Score = 92 (37.4 bits), Expect = 7.7e-30, Sum P(6) = 7.7e-30
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 494 DARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
+ R HPSH+G++C + TP+G N GL+ +L V V+
Sbjct: 471 EVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVN 507
Score = 47 (21.6 bits), Expect = 7.7e-30, Sum P(6) = 7.7e-30
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 690 LLGLSCGIIPFANHDHARRVL 710
++ ++ +IPF HD A R L
Sbjct: 586 MVSVATAMIPFLEHDDANRAL 606
Score = 44 (20.5 bits), Expect = 7.7e-30, Sum P(6) = 7.7e-30
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 194 GYFIIKGAEKVFVAQ 208
G FII G E+V V+Q
Sbjct: 164 GTFIINGTERVVVSQ 178
>TIGR_CMR|SO_0224 [details] [associations]
symbol:SO_0224 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:NP_715864.1 ProteinModelPortal:Q8EK74
PRIDE:Q8EK74 GeneID:1168107 KEGG:son:SO_0224 PATRIC:23520141
Uniprot:Q8EK74
Length = 1345
Score = 189 (71.6 bits), Expect = 1.1e-29, Sum P(7) = 1.1e-29
Identities = 45/116 (38%), Positives = 64/116 (55%)
Query: 992 PFATPSVDA-----ITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSE 1046
P ATP+ D I + L AG G +L+DGRTG + +G + +L H+ +
Sbjct: 1184 PVATPAFDGAKEKEIKQMLELAGLPTSGQLKLFDGRTGNEFERPVTVGYMYMLKLNHLVD 1243
Query: 1047 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
DK+ R+TG +T+QP+ + +FGG +FGEME L A+GAA L E L SD
Sbjct: 1244 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1299
Score = 114 (45.2 bits), Expect = 1.1e-29, Sum P(7) = 1.1e-29
Identities = 30/105 (28%), Positives = 55/105 (52%)
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
+L GQN +A GYN EDS++++ + F + HI+ + ++ + ++
Sbjct: 794 DLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCIARDTKLGSEEITA 853
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG 874
D + N G +S + + LD+ G +IGA ++ GDI++GK G
Sbjct: 854 D-IPNVG--ESALSK---LDESGIVYIGAEVKGGDILVGKVTPKG 892
Score = 108 (43.1 bits), Expect = 1.1e-29, Sum P(7) = 1.1e-29
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 917 GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
GDK + HG KGV+ + E+ P+ QG DIV+NP PSR GQ
Sbjct: 1064 GDKMAGRHGNKGVISKINPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQ 1112
Score = 88 (36.0 bits), Expect = 1.1e-29, Sum P(7) = 1.1e-29
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 494 DARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADD 552
+ R HP+H+G++C + TP+G N GL+ +L ++ LE + ++ + G+ + D+
Sbjct: 547 EVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVVD-GV--ITDE 603
Query: 553 ASY 555
Y
Sbjct: 604 VEY 606
Score = 56 (24.8 bits), Expect = 1.1e-29, Sum P(7) = 1.1e-29
Identities = 40/153 (26%), Positives = 71/153 (46%)
Query: 39 LVSHQINSYNEFI------KNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
L+S Q++S+ +F + GL+ AF S V P S G E +Y S + G+
Sbjct: 27 LLSIQLDSFKKFTDQDPTGERGLEAAFRS-----VFP--IKSFSGNSELQYVSYKLGE-- 77
Query: 93 LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSD-KFKTGREQY 151
P F D+ + +++ +TYS+ ++VK++ +Y ++ K +E Y
Sbjct: 78 ---PVF---------DV--KECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQEVY 123
Query: 152 IQK-EVLSDETTNIIIGRIPVMVKSDLCWMKGV 183
+ +++D T +I G V+V S L GV
Sbjct: 124 MGDIPLMTDNGTFVINGTERVIV-SQLHRSPGV 155
Score = 50 (22.7 bits), Expect = 1.1e-29, Sum P(7) = 1.1e-29
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 690 LLGLSCGIIPFANHDHARRVL 710
++ ++ +IPF HD A R L
Sbjct: 661 IISVAASLIPFLEHDDANRAL 681
Score = 50 (22.7 bits), Expect = 1.1e-29, Sum P(7) = 1.1e-29
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 1133 YCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
Y I D G+ ++ +P +L +E+ S+GI ++ D E
Sbjct: 1308 YKNIVD-GNHQMQPGMPESFNVLLKEIRSLGINIELDQE 1345
Score = 44 (20.5 bits), Expect = 1.7e-28, Sum P(7) = 1.7e-28
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 194 GYFIIKGAEKVFVAQ 208
G F+I G E+V V+Q
Sbjct: 134 GTFVINGTERVIVSQ 148
>UNIPROTKB|H7C0D9 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
Ensembl:ENST00000458012 Bgee:H7C0D9 Uniprot:H7C0D9
Length = 308
Score = 340 (124.7 bits), Expect = 1.4e-29, P = 1.4e-29
Identities = 85/193 (44%), Positives = 112/193 (58%)
Query: 774 GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE-VDNKEMQVKRRSSDDM 832
G NAIVAV + GY+ ED++++N+AS ERG H YK+E +D E K + D
Sbjct: 123 GTNAIVAVISYTGYDMEDAMIVNKASWERGF---AHGSVYKSEFIDLSE---KIKQGDSS 176
Query: 833 VNFGKIQSKIGRV-DSLDDDGFPFIGANLQSGDIVIGKY-ADSGADHSIKLKHTERGMVQ 890
+ FG I+ RV LDDDG PFIGA LQ GD ++G + K E +V
Sbjct: 177 LVFG-IKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVD 235
Query: 891 KVVLSSNDDGKN-FSVV--SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIV 947
+ + SND G F V ++R R+P +GDKF+S HGQKG+L L E+ PFT G+V
Sbjct: 236 NIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMV 295
Query: 948 PDIVINPHAFPSR 960
PDI+ NPH FPSR
Sbjct: 296 PDILFNPHGFPSR 308
>TIGR_CMR|GSU_2863 [details] [associations]
symbol:GSU_2863 "DNA-directed RNA polymerase, beta
subunit" species:243231 "Geobacter sulfurreducens PCA" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218612
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 OMA:FMTWEGY
RefSeq:NP_953905.1 ProteinModelPortal:Q748Y6 PRIDE:Q748Y6
GeneID:2686783 KEGG:gsu:GSU2863 PATRIC:22028577
BioCyc:GSUL243231:GH27-2844-MONOMER Uniprot:Q748Y6
Length = 1370
Score = 187 (70.9 bits), Expect = 7.1e-29, Sum P(6) = 7.1e-29
Identities = 42/114 (36%), Positives = 65/114 (57%)
Query: 990 ATP-FATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
A+P F S + I L +AGF + LYDG++GE + + +G + +L H+ +DK
Sbjct: 1208 ASPVFEGASEEQIRSMLDKAGFDETAQVSLYDGKSGEPFKHKVTVGVMYVLKLHHLVDDK 1267
Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
+ R+ GP +T+QP+ + +FGG + GEME + A+GAA L E L SD
Sbjct: 1268 IHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSD 1321
Score = 125 (49.1 bits), Expect = 7.1e-29, Sum P(6) = 7.1e-29
Identities = 33/105 (31%), Positives = 54/105 (51%)
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
EL GQN +VA GYN EDS++++ ++ + S HI ++ + ++ K +
Sbjct: 801 ELALGQNVVVAFMPWGGYNFEDSILVSEKLVKDDRYTSIHIEEFECVARDTKLG-KEEIT 859
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG 874
D+ N G+ K LD+ G IGA ++ GDI++GK G
Sbjct: 860 SDIPNLGEEALK-----DLDESGIIRIGAEVKPGDILVGKITPKG 899
Score = 102 (41.0 bits), Expect = 7.1e-29, Sum P(6) = 7.1e-29
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 916 LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
+GDK + HG KGV+ + +E+ P+ G +IV+NP PSR GQ
Sbjct: 1090 VGDKMAGRHGNKGVVSRILPEEDMPYMEDGRPVEIVLNPLGVPSRMNVGQ 1139
Score = 87 (35.7 bits), Expect = 7.1e-29, Sum P(6) = 7.1e-29
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 494 DARYPHPSHWGKICFLSTPDGENCGLVKNL 523
+ R HP+H+G++C + TP+G N GL+ +L
Sbjct: 554 EVRDVHPTHYGRVCPIETPEGPNIGLIASL 583
Score = 60 (26.2 bits), Expect = 7.1e-29, Sum P(6) = 7.1e-29
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 103 GGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETT 162
G ++D+ H R MT+++ MKVKV+ V+ V D TG +++ E
Sbjct: 80 GAPKYDVEECHQR--GMTFAAPMKVKVRLVVWD---VNKD---TGVRSI--RDIKEQE-- 127
Query: 163 NIIIGRIPVMVKSDLCWMKGVEK 185
+ G IP+M ++ + G E+
Sbjct: 128 -VYFGEIPLMTENGTFIINGTER 149
Score = 46 (21.3 bits), Expect = 7.1e-29, Sum P(6) = 7.1e-29
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 690 LLGLSCGIIPFANHDHARRVLYQSQKHSSQAI 721
L+ ++ +IPF +D A R L S QA+
Sbjct: 668 LVSVAASLIPFLENDDANRALMGSNMQR-QAV 698
Score = 45 (20.9 bits), Expect = 2.3e-27, Sum P(6) = 2.3e-27
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 194 GYFIIKGAEKVFVAQ 208
G FII G E+V V+Q
Sbjct: 140 GTFIINGTERVIVSQ 154
Score = 39 (18.8 bits), Expect = 7.1e-20, Sum P(5) = 7.1e-20
Identities = 11/56 (19%), Positives = 24/56 (42%)
Query: 832 MVNFGKIQSKIGRVDSLDDDGFPFIGAN--LQSGDIVIGKYADSGADHSIKLKHTE 885
+V GK+ S + +L+++G AN + + + +Y + L H +
Sbjct: 601 IVQDGKVTSDVKFFSALEEEGHAIAQANAEMDADGRFVNEYVSARKSGEFLLVHRD 656
>UNIPROTKB|Q9KV30 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 179 (68.1 bits), Expect = 2.0e-28, Sum P(7) = 2.0e-28
Identities = 45/120 (37%), Positives = 62/120 (51%)
Query: 988 RYATPFATPSVDAITEQ-----LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
R P ATP D E L A G L+DGRTG+ + +G + +L
Sbjct: 1176 RAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235
Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
H+ +DK+ R+TG +T+QP+ + +FGG +FGEME L A+GAA L E L SD
Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295
Score = 119 (46.9 bits), Expect = 2.0e-28, Sum P(7) = 2.0e-28
Identities = 30/105 (28%), Positives = 54/105 (51%)
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
EL GQN +A GYN EDS++++ ++ F + HI+ + ++ + ++
Sbjct: 793 ELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGAEEITA 852
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG 874
D + N G+ + LD+ G +IGA ++ GDI++GK G
Sbjct: 853 D-IPNVGE-----AALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891
Score = 104 (41.7 bits), Expect = 2.0e-28, Sum P(7) = 2.0e-28
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 917 GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
GDK + HG KGV+ + E+ P+ G DIV+NP PSR GQ
Sbjct: 1063 GDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQ 1111
Score = 86 (35.3 bits), Expect = 2.0e-28, Sum P(7) = 2.0e-28
Identities = 41/213 (19%), Positives = 84/213 (39%)
Query: 353 GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMA 412
GT + + M K L+ +G+ + D+ D N+ +V + + +
Sbjct: 418 GTLDEVDIIEVMKK-LISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476
Query: 413 KALQRDLYGDR-TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRAN 471
+ L GD V P + ++A ++ + F + S + +S +
Sbjct: 477 ERLS---LGDLDNVMPQDL-INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVT----HKR 528
Query: 472 PLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST 531
+ L TR++ + + R H +H+G++C + TP+G N GL+ +L +
Sbjct: 529 RISALGPGGLTRERAGF-----EVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNE 583
Query: 532 -SILEPIFEQLFNSGMEKLADDASYSLGGKFKV 563
LE + ++ N + D S G+F +
Sbjct: 584 YGFLETPYRRVVNGVVTDEVDYLSAIEEGQFVI 616
Score = 58 (25.5 bits), Expect = 2.0e-28, Sum P(7) = 2.0e-28
Identities = 38/152 (25%), Positives = 66/152 (43%)
Query: 39 LVSHQINSYNEFIKN------GLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
L+S Q++S+ +FI+ GL+ AF S V P S G E +Y S R G+
Sbjct: 27 LLSIQLDSFEKFIEQDPEGQYGLEAAFRS-----VFP--IQSYNGNSELQYVSYRLGE-- 77
Query: 93 LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSD-KFKTGREQY 151
P F D+ + +++ +TYS ++VK++ ++ + K +E Y
Sbjct: 78 ---PVF---------DV--KECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQEVY 123
Query: 152 IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV 183
+ + L E +I ++ S L GV
Sbjct: 124 MGEIPLMTENGTFVINGTERVIVSQLHRSPGV 155
Score = 49 (22.3 bits), Expect = 2.0e-28, Sum P(7) = 2.0e-28
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 690 LLGLSCGIIPFANHDHARRVL 710
++ ++ +IPF HD A R L
Sbjct: 660 VVSIAASLIPFLEHDDANRAL 680
Score = 48 (22.0 bits), Expect = 2.0e-28, Sum P(7) = 2.0e-28
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 1133 YCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
Y I D G+ ++ +P +L +E+ S+GI ++ + E
Sbjct: 1304 YKNIVD-GNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1341
Score = 47 (21.6 bits), Expect = 2.5e-27, Sum P(7) = 2.5e-27
Identities = 15/74 (20%), Positives = 35/74 (47%)
Query: 112 RHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPV 171
+ +++ +TYS ++VK++ ++ K + K +EQ + +G IP+
Sbjct: 83 KECQIRGVTYSKPLRVKLRLVIF-DKDAPAGTVKDIKEQ------------EVYMGEIPL 129
Query: 172 MVKSDLCWMKGVEK 185
M ++ + G E+
Sbjct: 130 MTENGTFVINGTER 143
Score = 46 (21.3 bits), Expect = 2.1e-14, Sum P(4) = 2.1e-14
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 129 VQFQVYTQKRVTSDKFKTGREQYIQKEVLSD--ETTNIIIGRIPVMVKSDL 177
+ QV+T+ V DK EQ KE D E I+ G + V+S L
Sbjct: 929 IDVQVFTRDGVEKDKRALEIEQMQLKEAKKDLTEEFQILEGGLLARVRSVL 979
Score = 44 (20.5 bits), Expect = 4.9e-27, Sum P(7) = 4.9e-27
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 194 GYFIIKGAEKVFVAQ 208
G F+I G E+V V+Q
Sbjct: 134 GTFVINGTERVIVSQ 148
Score = 38 (18.4 bits), Expect = 1.5e-19, Sum P(6) = 1.5e-19
Identities = 15/53 (28%), Positives = 20/53 (37%)
Query: 774 GQNAIVAVNVHLGYNQ--EDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
GQ I N L D LV R E G+ EH+ Y N+ + +
Sbjct: 612 GQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHV-DYMDVATNQVVSI 663
>TIGR_CMR|VC_0328 [details] [associations]
symbol:VC_0328 "DNA-directed RNA polymerase, beta subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 179 (68.1 bits), Expect = 2.0e-28, Sum P(7) = 2.0e-28
Identities = 45/120 (37%), Positives = 62/120 (51%)
Query: 988 RYATPFATPSVDAITEQ-----LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
R P ATP D E L A G L+DGRTG+ + +G + +L
Sbjct: 1176 RAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLN 1235
Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
H+ +DK+ R+TG +T+QP+ + +FGG +FGEME L A+GAA L E L SD
Sbjct: 1236 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295
Score = 119 (46.9 bits), Expect = 2.0e-28, Sum P(7) = 2.0e-28
Identities = 30/105 (28%), Positives = 54/105 (51%)
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
EL GQN +A GYN EDS++++ ++ F + HI+ + ++ + ++
Sbjct: 793 ELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGAEEITA 852
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG 874
D + N G+ + LD+ G +IGA ++ GDI++GK G
Sbjct: 853 D-IPNVGE-----AALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891
Score = 104 (41.7 bits), Expect = 2.0e-28, Sum P(7) = 2.0e-28
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 917 GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
GDK + HG KGV+ + E+ P+ G DIV+NP PSR GQ
Sbjct: 1063 GDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQ 1111
Score = 86 (35.3 bits), Expect = 2.0e-28, Sum P(7) = 2.0e-28
Identities = 41/213 (19%), Positives = 84/213 (39%)
Query: 353 GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMA 412
GT + + M K L+ +G+ + D+ D N+ +V + + +
Sbjct: 418 GTLDEVDIIEVMKK-LISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476
Query: 413 KALQRDLYGDR-TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRAN 471
+ L GD V P + ++A ++ + F + S + +S +
Sbjct: 477 ERLS---LGDLDNVMPQDL-INAKPISAAVKEFFGSSQLSQFMDQNNPLSEVT----HKR 528
Query: 472 PLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST 531
+ L TR++ + + R H +H+G++C + TP+G N GL+ +L +
Sbjct: 529 RISALGPGGLTRERAGF-----EVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNE 583
Query: 532 -SILEPIFEQLFNSGMEKLADDASYSLGGKFKV 563
LE + ++ N + D S G+F +
Sbjct: 584 YGFLETPYRRVVNGVVTDEVDYLSAIEEGQFVI 616
Score = 58 (25.5 bits), Expect = 2.0e-28, Sum P(7) = 2.0e-28
Identities = 38/152 (25%), Positives = 66/152 (43%)
Query: 39 LVSHQINSYNEFIKN------GLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
L+S Q++S+ +FI+ GL+ AF S V P S G E +Y S R G+
Sbjct: 27 LLSIQLDSFEKFIEQDPEGQYGLEAAFRS-----VFP--IQSYNGNSELQYVSYRLGE-- 77
Query: 93 LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSD-KFKTGREQY 151
P F D+ + +++ +TYS ++VK++ ++ + K +E Y
Sbjct: 78 ---PVF---------DV--KECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQEVY 123
Query: 152 IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV 183
+ + L E +I ++ S L GV
Sbjct: 124 MGEIPLMTENGTFVINGTERVIVSQLHRSPGV 155
Score = 49 (22.3 bits), Expect = 2.0e-28, Sum P(7) = 2.0e-28
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 690 LLGLSCGIIPFANHDHARRVL 710
++ ++ +IPF HD A R L
Sbjct: 660 VVSIAASLIPFLEHDDANRAL 680
Score = 48 (22.0 bits), Expect = 2.0e-28, Sum P(7) = 2.0e-28
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 1133 YCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
Y I D G+ ++ +P +L +E+ S+GI ++ + E
Sbjct: 1304 YKNIVD-GNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1341
Score = 47 (21.6 bits), Expect = 2.5e-27, Sum P(7) = 2.5e-27
Identities = 15/74 (20%), Positives = 35/74 (47%)
Query: 112 RHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPV 171
+ +++ +TYS ++VK++ ++ K + K +EQ + +G IP+
Sbjct: 83 KECQIRGVTYSKPLRVKLRLVIF-DKDAPAGTVKDIKEQ------------EVYMGEIPL 129
Query: 172 MVKSDLCWMKGVEK 185
M ++ + G E+
Sbjct: 130 MTENGTFVINGTER 143
Score = 46 (21.3 bits), Expect = 2.1e-14, Sum P(4) = 2.1e-14
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 129 VQFQVYTQKRVTSDKFKTGREQYIQKEVLSD--ETTNIIIGRIPVMVKSDL 177
+ QV+T+ V DK EQ KE D E I+ G + V+S L
Sbjct: 929 IDVQVFTRDGVEKDKRALEIEQMQLKEAKKDLTEEFQILEGGLLARVRSVL 979
Score = 44 (20.5 bits), Expect = 4.9e-27, Sum P(7) = 4.9e-27
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 194 GYFIIKGAEKVFVAQ 208
G F+I G E+V V+Q
Sbjct: 134 GTFVINGTERVIVSQ 148
Score = 38 (18.4 bits), Expect = 1.5e-19, Sum P(6) = 1.5e-19
Identities = 15/53 (28%), Positives = 20/53 (37%)
Query: 774 GQNAIVAVNVHLGYNQ--EDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
GQ I N L D LV R E G+ EH+ Y N+ + +
Sbjct: 612 GQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHV-DYMDVATNQVVSI 663
>TIGR_CMR|NSE_0678 [details] [associations]
symbol:NSE_0678 "DNA-directed RNA polymerase, beta
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_506556.1 ProteinModelPortal:Q2GD90
STRING:Q2GD90 GeneID:3931355 KEGG:nse:NSE_0678 PATRIC:22681375
BioCyc:NSEN222891:GHFU-692-MONOMER Uniprot:Q2GD90
Length = 1358
Score = 180 (68.4 bits), Expect = 3.5e-28, Sum P(7) = 3.5e-28
Identities = 45/118 (38%), Positives = 60/118 (50%)
Query: 985 GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
G+ A+ F P D I L AG G E LYDG TGE + +G + +L H+
Sbjct: 1178 GVPVAASVFEGPKTDEIERLLVLAGKDPSGQEVLYDGVTGEKFDRKVTVGCKYMLKLHHL 1237
Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
DK+ R+ G +T+QP+ + FGG +FGEME L A+GA L E L SD
Sbjct: 1238 VNDKIHARSIGSYSLITQQPLGGKSHFGGQRFGEMECWALQAYGATFALQEMLTIKSD 1295
Score = 113 (44.8 bits), Expect = 3.5e-28, Sum P(7) = 3.5e-28
Identities = 30/104 (28%), Positives = 57/104 (54%)
Query: 766 LPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVK 825
+ + EL G+N +VA GYN EDS+V++ + +F S H+ ++ V + + +
Sbjct: 781 IQKGELALGRNLVVAFLSWRGYNFEDSVVISSNVVRDDLFTSVHLEGFECVVRDTRLGPE 840
Query: 826 RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK 869
+ D V+ G + + LD+ G +GAN+++GD+++GK
Sbjct: 841 EITRD--VS-GVAEEFL---HCLDEFGIACVGANVEAGDVLVGK 878
Score = 112 (44.5 bits), Expect = 3.5e-28, Sum P(7) = 3.5e-28
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 906 VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
V+++ P GDK S HG KGV+ + E+ P+ G DI++NP PSR GQ
Sbjct: 1056 VAVKHTLQP--GDKMSGRHGNKGVISRIVPAEDMPYLADGTPVDIILNPLGVPSRMNVGQ 1113
Score = 87 (35.7 bits), Expect = 3.5e-28, Sum P(7) = 3.5e-28
Identities = 39/150 (26%), Positives = 69/150 (46%)
Query: 410 RMAKALQRDLY-GD-RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANL 467
RMAK + ++ D TV P E +++ IL + F + A S +T +S I +
Sbjct: 466 RMAKVIVENMATADFDTVMPCEM-INSKILGAVIREFFMSSALSQFMDQTNPLSEIT-HK 523
Query: 468 GRANPLQTLVDLRRTRQQVQYTGKVG-DARYPHPSHWGKICFLSTPDGENCGLVKNLGVT 526
R + L L R G+ G + R H +H+G+IC TP+G GL+ +L +
Sbjct: 524 RRISALGP-GGLNR--------GRAGFEVRDVHTTHYGRICATETPEGATIGLINSLAIY 574
Query: 527 GLVST-SILEPIFEQLFNSGMEKLADDASY 555
++ +E + + G ++ D+ +Y
Sbjct: 575 AKINKYGFIETPYRYV-RDG--RVTDEVTY 601
Score = 56 (24.8 bits), Expect = 3.5e-28, Sum P(7) = 3.5e-28
Identities = 26/99 (26%), Positives = 48/99 (48%)
Query: 88 FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
+G+ +L+ S G +HD + R +TYS+ ++ ++ V+ + TS + G
Sbjct: 54 YGRASLEFVSCRMGE--PKHDEYGCVER--GITYSAPLRAILRLVVFGDE--TSGEGSEG 107
Query: 148 -REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK 185
+ K+V E I +G IP+M K+ + GVE+
Sbjct: 108 VSTEPAVKDVREQE---IYMGDIPIMSKNGTFIINGVER 143
Score = 49 (22.3 bits), Expect = 3.5e-28, Sum P(7) = 3.5e-28
Identities = 30/94 (31%), Positives = 44/94 (46%)
Query: 194 GYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFE-DIKG 252
G FII G E+V V+Q ++ N +++ K N R+I FE D K
Sbjct: 134 GTFIINGVERVVVSQMHRA-PGVFFDNDKARSISGKL-NYIARIIPYRGSWLDFEFDAKD 191
Query: 253 GEKVLSVYFL---STEIPIWILFFALGVSSDKEI 283
VL YF ++P+ L ALG+S+ K+I
Sbjct: 192 ---VL--YFRIDKKRKLPVTFLLRALGLSN-KDI 219
Score = 44 (20.5 bits), Expect = 3.5e-28, Sum P(7) = 3.5e-28
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 690 LLGLSCGIIPFANHDHARRVLYQSQKHSSQAI 721
++ ++ +IPF +D A R L S QA+
Sbjct: 656 IVSVAASLIPFLENDDANRALMGSNMQR-QAV 686
Score = 40 (19.1 bits), Expect = 2.7e-27, Sum P(7) = 2.7e-27
Identities = 19/83 (22%), Positives = 32/83 (38%)
Query: 185 KGDCDFDHGGYFIIKGAEKV-FVAQEQICLKRLWVSNSMGWTVAYKSENKRNRL-IVRLV 242
KG+ HG + K+ F+ + I L L + + Y + L I R+V
Sbjct: 307 KGEVLLPHGTKLTKEHVAKLEFLDVDSIKLVELKGNYVFSTVLQYDCSYEEAMLSIYRVV 366
Query: 243 DMSKFEDIKGGEKVLSVYFLSTE 265
+ ++ EK+ F S E
Sbjct: 367 RPGEIPSVESAEKLFESLFFSPE 389
>TIGR_CMR|APH_1024 [details] [associations]
symbol:APH_1024 "DNA-directed RNA polymerase, beta
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 RefSeq:YP_505583.1 ProteinModelPortal:Q2GJ68
STRING:Q2GJ68 PRIDE:Q2GJ68 GeneID:3930425 KEGG:aph:APH_1024
PATRIC:20950798 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
BioCyc:APHA212042:GHPM-1031-MONOMER Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 Uniprot:Q2GJ68
Length = 1383
Score = 195 (73.7 bits), Expect = 2.0e-26, Sum P(5) = 2.0e-26
Identities = 75/259 (28%), Positives = 116/259 (44%)
Query: 853 FPFIGANLQSGDIVIGKYADSGADHSI----KLKHTERGMVQKVVLSSNDDGKNFSVVSL 908
F + NLQ GD + G++ + G I + H E G ++L+S G S +++
Sbjct: 1084 FVAVKHNLQPGDKMAGRHGNKGVISRIVPVEDMPHLEDGTPVDIILNSL--GVP-SRMNI 1140
Query: 909 RQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXX 968
Q+ LG ++ + G + L+S E +G V + + +F S GQ
Sbjct: 1141 GQILETHLGWAAVNLGHRVGRM--LDSGEE-----EGPVVESI---RSFLSEVYEGQKLK 1190
Query: 969 XXXXXXXXXXXXXXCSGLKRYATPFATPSV----DA-ITEQLHRAGFSKWGTERLYDGRT 1023
+ L+R P A P DA I+ L A G LYDGR+
Sbjct: 1191 EDVASMSDEALLKFANRLRR-GVPMAAPVFEGPKDAQISRLLELADVDPSGQVDLYDGRS 1249
Query: 1024 GEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 1083
G+ + +G + +L H+ +DK+ R+ GP +T+QP+ + FGG +FGEME
Sbjct: 1250 GQKFDRKVTVGYIYMLKLHHLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWA 1309
Query: 1084 LIAHGAAANLHERLFTLSD 1102
L A+GAA L E L SD
Sbjct: 1310 LQAYGAAYTLQEMLTVKSD 1328
Score = 123 (48.4 bits), Expect = 2.0e-26, Sum P(5) = 2.0e-26
Identities = 94/409 (22%), Positives = 157/409 (38%)
Query: 282 EIVNL-IDFTCEDCSILNILFASIH--DADNKCDEFRKGRNA----LKYVDKLIKGTTFP 334
EI L IDF +LN LF H D + +R R+ L+ V KG F
Sbjct: 357 EIAFLNIDFLTVGPYVLNTLFLDRHITQEDALFEIYRVLRSGESPNLEAVKSFFKGLFFE 416
Query: 335 PGESTEEC-----MNTYLFPSLHG--TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
P +N++L + T + +++K L+ G D+ D N+
Sbjct: 417 PDRYDLSVVGRIKLNSHLRLDIDENLTVLTKDDIVHVIKKLVLLPDGEGVVDDIDHLGNR 476
Query: 388 XXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFST 447
+V I +RM + D V P ++ ++ IL L FS+
Sbjct: 477 RVRSVGEFIENQFRVGILRL-ERMIMDYMSSVNFDNAV-PCDF-VNPKILATVLKDFFSS 533
Query: 448 GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
S +T +S + L L TR++ + + R HP+H+G+IC
Sbjct: 534 SQLSQFMDQTNPLSEVT----HKRRLSALGPGGLTRERAGF-----EVRDVHPTHYGRIC 584
Query: 508 FLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVD 566
+ TP+G+N GL+ +L + ++ +E + ++ + G+ + D Y L + +
Sbjct: 585 PIETPEGQNIGLISSLAIYAKINKYGFIESPYRKVID-GV--VTDSVEYLLATQESDYYI 641
Query: 567 GDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQ----SEVRIFMDAGRILRPLLV 622
D ++ FV V +KR+++ S +I A ++ P L
Sbjct: 642 ADAGAALDENNRFVDDMLYCRHGGNF---VMVKREDVNYIDVSPKQIVSVAASLI-PFL- 696
Query: 623 VENMGKIKSLEGKNYTFQAL-LDHGIIELVGTEEEEDCCTAWGIKYLLK 670
EN ++L G N QA+ L LVGT E G L K
Sbjct: 697 -ENNDANRALMGSNMQRQAVPLLKAEAPLVGTGMESVVAAGSGAVVLAK 744
Score = 118 (46.6 bits), Expect = 2.0e-26, Sum P(5) = 2.0e-26
Identities = 41/137 (29%), Positives = 67/137 (48%)
Query: 736 SHQLFYPQRPLFRTMISDCLGKPGY-GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLV 794
+H QRP+ + I D + + R EL G+N +VA GYN EDS+V
Sbjct: 784 NHNTCINQRPIVK--IGDYVRTNDVIADGAAIDRGELALGKNVLVAFMSWQGYNFEDSIV 841
Query: 795 MNRASLERGMFRSEHIRSYKAEVDNKEMQVKR--RSSDDMVNFGKIQSKIGRVDSLDDDG 852
++ ++R +F S HI ++ V + + ++ RS D VN + + LDD G
Sbjct: 842 ISSDVVKRDVFTSIHIEEFECVVRDTPLGPEKIMRSVPD-VN----EESLSH---LDDVG 893
Query: 853 FPFIGANLQSGDIVIGK 869
IGA + +G +++GK
Sbjct: 894 IVNIGAEVSAGSVLVGK 910
Score = 57 (25.1 bits), Expect = 2.0e-26, Sum P(5) = 2.0e-26
Identities = 15/70 (21%), Positives = 36/70 (51%)
Query: 117 QNMTYSSRMKVKVQFQVYTQKRVTSDKFK-TGREQYIQKEVLSDETTNIIIGRIPVMVKS 175
+ +T+S M++ ++F V+ + V+ + K E +++ V + + IG +P+M
Sbjct: 98 RGITFSVPMRITLRFVVWKVQEVSFKEVKYVVDEGTLERSVKYMKEQEVSIGDLPMMTSY 157
Query: 176 DLCWMKGVEK 185
+ G+E+
Sbjct: 158 GTFIINGIER 167
Score = 47 (21.6 bits), Expect = 2.0e-26, Sum P(5) = 2.0e-26
Identities = 26/91 (28%), Positives = 40/91 (43%)
Query: 194 GYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFE-DIKG 252
G FII G E+V V+Q ++ + G T + R+I FE DIK
Sbjct: 158 GTFIINGIERVIVSQMHRS-PGVFFDSDKGKTYSSGKLIYSARIIPYRGSWLDFEFDIKD 216
Query: 253 GEKVLSVYFL---STEIPIWILFFALGVSSD 280
+YF ++P+ L ALG+S++
Sbjct: 217 -----IIYFRIDKKRKLPVTYLLKALGMSNN 242
Score = 39 (18.8 bits), Expect = 2.5e-24, Sum P(4) = 2.5e-24
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 44 INSYNEFIKNGLQKAFDSFGETIVEPG-YDPSKKGE 78
+ SY FI NG+++ S + PG + S KG+
Sbjct: 154 MTSYGTFIINGIERVIVS--QMHRSPGVFFDSDKGK 187
Score = 39 (18.8 bits), Expect = 5.3e-18, Sum P(5) = 5.3e-18
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 690 LLGLSCGIIPFANHDHARRVLYQSQKHSSQAI 721
++ ++ +IPF ++ A R L S QA+
Sbjct: 685 IVSVAASLIPFLENNDANRALMGSNMQR-QAV 715
>TIGR_CMR|SPO_3508 [details] [associations]
symbol:SPO_3508 "DNA-directed RNA polymerase, beta
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_168703.1 ProteinModelPortal:Q5LMQ5 PRIDE:Q5LMQ5
GeneID:3196296 KEGG:sil:SPO3508 PATRIC:23380485 Uniprot:Q5LMQ5
Length = 1378
Score = 212 (79.7 bits), Expect = 1.0e-25, Sum P(7) = 1.0e-25
Identities = 48/116 (41%), Positives = 66/116 (56%)
Query: 992 PFATPSVDA-----ITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSE 1046
P ATP D + + L RAGF G L+DGRTGE + +G + +L H+ +
Sbjct: 1213 PIATPVFDGAKEADVNDALTRAGFDTSGQSVLFDGRTGEQFARPVTVGIKYLLKLHHLVD 1272
Query: 1047 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
DK+ R+TGP +T+QP+ + +FGG +FGEME L A+GAA L E L SD
Sbjct: 1273 DKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1328
Score = 125 (49.1 bits), Expect = 1.0e-25, Sum P(7) = 1.0e-25
Identities = 32/105 (30%), Positives = 55/105 (52%)
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
EL G+N +VA GYN EDS++++ +F S HI ++ + ++ + +
Sbjct: 812 ELALGKNVVVAFMPWNGYNYEDSILISERIARDDVFTSIHIEEFEVAARDTKLGPEEITR 871
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG 874
D + N G+ + +LD+ G +IGA +Q GDI++GK G
Sbjct: 872 D-IPNVGEEALR-----NLDEAGIVYIGAEVQPGDILVGKITPKG 910
Score = 111 (44.1 bits), Expect = 3.1e-15, Sum P(7) = 3.1e-15
Identities = 34/126 (26%), Positives = 48/126 (38%)
Query: 917 GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXX 976
GDK + HG KGV+ + E+ PF G D +NP PSR GQ
Sbjct: 1095 GDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRMNVGQILETHMGWAAR 1154
Query: 977 XXXXXXCSGLKRYA-TPFATPSVDAIT----EQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
L+ Y + TP DA+ E ++ G S + L + G + R +
Sbjct: 1155 GLGLNVDEALQEYRRSGDLTPVRDAMKHAYGEDVYAEGISGMDEDTLVEA-AGNVTRGVP 1213
Query: 1032 FIGPTF 1037
P F
Sbjct: 1214 IATPVF 1219
Score = 90 (36.7 bits), Expect = 1.0e-25, Sum P(7) = 1.0e-25
Identities = 36/166 (21%), Positives = 67/166 (40%)
Query: 365 VKCLLQAYSGRRKCDNRDDFRNKXXXXXXXXXXXXXKVHIAHARKRMAKALQRDLYGDRT 424
+K L++ G+ D+ D N+ +V + +R K + D T
Sbjct: 449 IKALVELRDGKGDIDDIDHLGNRRVRSVGELMENQYRVGLLRM-ERAIKERMSSVEID-T 506
Query: 425 VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
V P + ++A + F + S +T +S + L L TR+
Sbjct: 507 VMPQDL-INAKPAAAAVREFFGSSQLSQFMDQTNPLSEVT----HKRRLSALGPGGLTRE 561
Query: 485 QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
+ + + R HP+H+G++C + TP+G N GL+ +L V+
Sbjct: 562 RAGF-----EVRDVHPTHYGRMCPIETPEGPNIGLINSLATFARVN 602
Score = 53 (23.7 bits), Expect = 1.0e-25, Sum P(7) = 1.0e-25
Identities = 40/171 (23%), Positives = 72/171 (42%)
Query: 17 LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNG-LQKAFDSFGETIVEPGYDPSK 75
LG++ L+ + K L+ Q +SY+ F+ +G + D G V P K
Sbjct: 6 LGQKRLRKYYGKIR-EVLEMPNLIEVQKSSYDLFLNSGDAPQPLDGEGIMGVFQSVFPIK 64
Query: 76 KGEGEWRYAS-MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
++ S + F + L+KP + D + R +MTYS+ +KV ++ V+
Sbjct: 65 ----DFNETSVLEFVKYELEKPKY------DVEECMQR-----DMTYSAPLKVTLRLIVF 109
Query: 135 TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK 185
V D TG K V + ++ +G +P+M + + G E+
Sbjct: 110 D---VDED---TGA-----KSVKDIKEQDVFMGDMPLMTPNGTFIVNGTER 149
Score = 46 (21.3 bits), Expect = 1.0e-25, Sum P(7) = 1.0e-25
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 690 LLGLSCGIIPFANHDHARRVLYQSQKHSSQAI 721
L+ ++ +IPF +D A R L S QA+
Sbjct: 680 LVSVAASLIPFLENDDANRALMGSNMQR-QAV 710
Score = 44 (20.5 bits), Expect = 1.0e-25, Sum P(7) = 1.0e-25
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 194 GYFIIKGAEKVFVAQ 208
G FI+ G E+V V+Q
Sbjct: 140 GTFIVNGTERVIVSQ 154
Score = 44 (20.5 bits), Expect = 1.0e-25, Sum P(7) = 1.0e-25
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKF-DTE 1171
G+D +A +P +L +E+ +G+ ++ D E
Sbjct: 1343 GEDNFEAGIPESFNVLVKEVRGLGLNMELLDAE 1375
Score = 41 (19.5 bits), Expect = 1.6e-17, Sum P(7) = 1.6e-17
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 816 EVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFP----FIGAN--LQSGDIVIGK 869
E N++ ++++R+ D K++ K+ R D L FI LQ GD + G+
Sbjct: 1044 EALNEQYELQKRALDARFE-DKVE-KVRRGDDLPPGVMKMVKVFIAVKRKLQPGDKMAGR 1101
Query: 870 YADSG 874
+ + G
Sbjct: 1102 HGNKG 1106
Score = 38 (18.4 bits), Expect = 1.0e-11, Sum P(5) = 1.0e-11
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 302 ASIHDADNKCDEFRKGRNALKYVDKLIK---GTTFPPG 336
A I +A N+ E +K ++ DK+ K G PPG
Sbjct: 1040 AQIVEALNEQYELQKRALDARFEDKVEKVRRGDDLPPG 1077
>UNIPROTKB|P0C501 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522331 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218611
ProteinModelPortal:P0C501 Gramene:P0C501 Genevestigator:P0C501
Uniprot:P0C501
Length = 1075
Score = 231 (86.4 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 70/246 (28%), Positives = 106/246 (43%)
Query: 866 VIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
+ G + + S+KL RG V V D V + Q R +GDK + HG
Sbjct: 771 IFGLEVSTSKETSLKLPIGGRGRVIDVKWIQRDPLDIMVRVYILQKREIKVGDKVAGRHG 830
Query: 926 QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSG 985
KG++ + +++ P+ G D+V NP PSR GQ
Sbjct: 831 NKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIA 890
Query: 986 L--KRYATPFATPSVDAITEQLHRAGFSKW-------GTERLYDGRTGEMVRSLIFIGPT 1036
+RY + V + + + + W G R++DGRTG+ + IG +
Sbjct: 891 PFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKS 950
Query: 1037 FYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHER 1096
+ +LIH ++K+ R+TGP +T+QPV R + GG + GEME L G A L E
Sbjct: 951 YILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGEMEVWALEGFGVAHILQEI 1010
Query: 1097 LFTLSD 1102
L SD
Sbjct: 1011 LTYKSD 1016
Score = 113 (44.8 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 31/123 (25%), Positives = 65/123 (52%)
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
EL G+N +VA GYN ED+++++ + ++ S HIR Y+ + D + +
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMV 889
++ + ++ + R +LD +G +G+ +++GDI++GK A S + E G++
Sbjct: 716 KEIPH---LEEHLLR--NLDRNGVVKLGSWVETGDILVGKLTPQIASESSYI--AEAGLL 768
Query: 890 QKV 892
+ +
Sbjct: 769 RAI 771
Score = 83 (34.3 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 489 TGKVGD--ARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST---SILEPIFE 539
TG+ +R HPSH+G+IC + T +G N GL +L + + S+ P +E
Sbjct: 406 TGRTASFRSRDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYE 461
Score = 53 (23.7 bits), Expect = 6.8e-21, Sum P(4) = 6.8e-21
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 692 GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPL 746
GL+ G + A RRV + K + Q + PT+ + + T ++ F+ PL
Sbjct: 326 GLALGRLQHAVQKTIRRVFIRQSKPTPQTLVTPTSTSILLITT--YETFFGTYPL 378
Score = 44 (20.5 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 689 FLLGLSCGIIPFANHDHARRVLYQSQKHSSQAI 721
F +G S +IPF H+ A R L S QA+
Sbjct: 532 FSIGGS--LIPFIEHNDANRALMSSNMQR-QAV 561
Score = 37 (18.1 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 112 RHARLQNMTYSSRMKVKVQ--FQVYTQKRVTS 141
R A +++TYSS + V + F QK+ S
Sbjct: 67 RDAVYESLTYSSELYVSARLIFGFDVQKQTIS 98
>UNIPROTKB|P0C502 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522329 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 ProtClustDB:CHL00001
RefSeq:YP_654206.1 ProteinModelPortal:P0C502 GeneID:4126922
Gramene:P0C502 Uniprot:P0C502
Length = 1075
Score = 231 (86.4 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 70/246 (28%), Positives = 106/246 (43%)
Query: 866 VIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
+ G + + S+KL RG V V D V + Q R +GDK + HG
Sbjct: 771 IFGLEVSTSKETSLKLPIGGRGRVIDVKWIQRDPLDIMVRVYILQKREIKVGDKVAGRHG 830
Query: 926 QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSG 985
KG++ + +++ P+ G D+V NP PSR GQ
Sbjct: 831 NKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIA 890
Query: 986 L--KRYATPFATPSVDAITEQLHRAGFSKW-------GTERLYDGRTGEMVRSLIFIGPT 1036
+RY + V + + + + W G R++DGRTG+ + IG +
Sbjct: 891 PFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKS 950
Query: 1037 FYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHER 1096
+ +LIH ++K+ R+TGP +T+QPV R + GG + GEME L G A L E
Sbjct: 951 YILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGEMEVWALEGFGVAHILQEI 1010
Query: 1097 LFTLSD 1102
L SD
Sbjct: 1011 LTYKSD 1016
Score = 113 (44.8 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 31/123 (25%), Positives = 65/123 (52%)
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
EL G+N +VA GYN ED+++++ + ++ S HIR Y+ + D + +
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMV 889
++ + ++ + R +LD +G +G+ +++GDI++GK A S + E G++
Sbjct: 716 KEIPH---LEEHLLR--NLDRNGVVKLGSWVETGDILVGKLTPQIASESSYI--AEAGLL 768
Query: 890 QKV 892
+ +
Sbjct: 769 RAI 771
Score = 83 (34.3 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 489 TGKVGD--ARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST---SILEPIFE 539
TG+ +R HPSH+G+IC + T +G N GL +L + + S+ P +E
Sbjct: 406 TGRTASFRSRDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYE 461
Score = 53 (23.7 bits), Expect = 6.8e-21, Sum P(4) = 6.8e-21
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 692 GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPL 746
GL+ G + A RRV + K + Q + PT+ + + T ++ F+ PL
Sbjct: 326 GLALGRLQHAVQKTIRRVFIRQSKPTPQTLVTPTSTSILLITT--YETFFGTYPL 378
Score = 44 (20.5 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 689 FLLGLSCGIIPFANHDHARRVLYQSQKHSSQAI 721
F +G S +IPF H+ A R L S QA+
Sbjct: 532 FSIGGS--LIPFIEHNDANRALMSSNMQR-QAV 561
Score = 37 (18.1 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 112 RHARLQNMTYSSRMKVKVQ--FQVYTQKRVTS 141
R A +++TYSS + V + F QK+ S
Sbjct: 67 RDAVYESLTYSSELYVSARLIFGFDVQKQTIS 98
>UNIPROTKB|P0C503 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:X15901
EMBL:AY522330 GenomeReviews:AY522330_GR GO:GO:0009295 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:CHL00001 PIR:JQ0213 RefSeq:NP_039373.1
ProteinModelPortal:P0C503 STRING:P0C503
EnsemblPlants:LOC_Osp1g00240.1 GeneID:3131432 KEGG:osa:3131432
Gramene:P0C503 OMA:HFLVSEK Uniprot:P0C503
Length = 1075
Score = 231 (86.4 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 70/246 (28%), Positives = 106/246 (43%)
Query: 866 VIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
+ G + + S+KL RG V V D V + Q R +GDK + HG
Sbjct: 771 IFGLEVSTSKETSLKLPIGGRGRVIDVKWIQRDPLDIMVRVYILQKREIKVGDKVAGRHG 830
Query: 926 QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSG 985
KG++ + +++ P+ G D+V NP PSR GQ
Sbjct: 831 NKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIA 890
Query: 986 L--KRYATPFATPSVDAITEQLHRAGFSKW-------GTERLYDGRTGEMVRSLIFIGPT 1036
+RY + V + + + + W G R++DGRTG+ + IG +
Sbjct: 891 PFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKS 950
Query: 1037 FYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHER 1096
+ +LIH ++K+ R+TGP +T+QPV R + GG + GEME L G A L E
Sbjct: 951 YILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGEMEVWALEGFGVAHILQEI 1010
Query: 1097 LFTLSD 1102
L SD
Sbjct: 1011 LTYKSD 1016
Score = 113 (44.8 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 31/123 (25%), Positives = 65/123 (52%)
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
EL G+N +VA GYN ED+++++ + ++ S HIR Y+ + D + +
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMV 889
++ + ++ + R +LD +G +G+ +++GDI++GK A S + E G++
Sbjct: 716 KEIPH---LEEHLLR--NLDRNGVVKLGSWVETGDILVGKLTPQIASESSYI--AEAGLL 768
Query: 890 QKV 892
+ +
Sbjct: 769 RAI 771
Score = 83 (34.3 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 489 TGKVGD--ARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST---SILEPIFE 539
TG+ +R HPSH+G+IC + T +G N GL +L + + S+ P +E
Sbjct: 406 TGRTASFRSRDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYE 461
Score = 53 (23.7 bits), Expect = 6.8e-21, Sum P(4) = 6.8e-21
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 692 GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPL 746
GL+ G + A RRV + K + Q + PT+ + + T ++ F+ PL
Sbjct: 326 GLALGRLQHAVQKTIRRVFIRQSKPTPQTLVTPTSTSILLITT--YETFFGTYPL 378
Score = 44 (20.5 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 689 FLLGLSCGIIPFANHDHARRVLYQSQKHSSQAI 721
F +G S +IPF H+ A R L S QA+
Sbjct: 532 FSIGGS--LIPFIEHNDANRALMSSNMQR-QAV 561
Score = 37 (18.1 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 112 RHARLQNMTYSSRMKVKVQ--FQVYTQKRVTS 141
R A +++TYSS + V + F QK+ S
Sbjct: 67 RDAVYESLTYSSELYVSARLIFGFDVQKQTIS 98
>UNIPROTKB|Q6ENI4 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AP006728 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:YP_052739.1 ProteinModelPortal:Q6ENI4
GeneID:2885962 Gramene:Q6ENI4 ProtClustDB:CHL00001 Uniprot:Q6ENI4
Length = 1075
Score = 231 (86.4 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 70/246 (28%), Positives = 106/246 (43%)
Query: 866 VIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
+ G + + S+KL RG V V D V + Q R +GDK + HG
Sbjct: 771 IFGLEVSTSKETSLKLPIGGRGRVIDVKWIQRDPLDIMVRVYILQKREIKVGDKVAGRHG 830
Query: 926 QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSG 985
KG++ + +++ P+ G D+V NP PSR GQ
Sbjct: 831 NKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIA 890
Query: 986 L--KRYATPFATPSVDAITEQLHRAGFSKW-------GTERLYDGRTGEMVRSLIFIGPT 1036
+RY + V + + + + W G R++DGRTG+ + IG +
Sbjct: 891 PFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKS 950
Query: 1037 FYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHER 1096
+ +LIH ++K+ R+TGP +T+QPV R + GG + GEME L G A L E
Sbjct: 951 YILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGEMEVWALEGFGVAHILQEI 1010
Query: 1097 LFTLSD 1102
L SD
Sbjct: 1011 LTYKSD 1016
Score = 113 (44.8 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 31/123 (25%), Positives = 65/123 (52%)
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
EL G+N +VA GYN ED+++++ + ++ S HIR Y+ + D + +
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 830 DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMV 889
++ + ++ + R +LD +G +G+ +++GDI++GK A S + E G++
Sbjct: 716 KEIPH---LEEHLLR--NLDRNGVVKLGSWVETGDILVGKLTPQIASESSYI--AEAGLL 768
Query: 890 QKV 892
+ +
Sbjct: 769 RAI 771
Score = 83 (34.3 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 489 TGKVGD--ARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST---SILEPIFE 539
TG+ +R HPSH+G+IC + T +G N GL +L + + S+ P +E
Sbjct: 406 TGRTASFRSRDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYE 461
Score = 53 (23.7 bits), Expect = 6.8e-21, Sum P(4) = 6.8e-21
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 692 GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPL 746
GL+ G + A RRV + K + Q + PT+ + + T ++ F+ PL
Sbjct: 326 GLALGRLQHAVQKTIRRVFIRQSKPTPQTLVTPTSTSILLITT--YETFFGTYPL 378
Score = 44 (20.5 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 689 FLLGLSCGIIPFANHDHARRVLYQSQKHSSQAI 721
F +G S +IPF H+ A R L S QA+
Sbjct: 532 FSIGGS--LIPFIEHNDANRALMSSNMQR-QAV 561
Score = 37 (18.1 bits), Expect = 4.1e-24, Sum P(5) = 4.1e-24
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 112 RHARLQNMTYSSRMKVKVQ--FQVYTQKRVTS 141
R A +++TYSS + V + F QK+ S
Sbjct: 67 RDAVYESLTYSSELYVSARLIFGFDVQKQTIS 98
>UNIPROTKB|F1NRJ5 [details] [associations]
symbol:F1NRJ5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
GeneTree:ENSGT00550000074993 EMBL:AADN02041199 IPI:IPI00820874
Ensembl:ENSGALT00000039028 Uniprot:F1NRJ5
Length = 760
Score = 250 (93.1 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
Identities = 73/228 (32%), Positives = 110/228 (48%)
Query: 674 DKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
D P TH EL +L + +IPF++H+ + R +YQ Q Q +GFP N R D
Sbjct: 540 DVMPGVTTHQELFPHSILSVVANLIPFSDHNQSPRNMYQCQM-GKQTMGFPVYNYKDRSD 598
Query: 734 TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
+ L PQ PL R + D G Y P G N++VAV + GY+ ED++
Sbjct: 599 NKLYLLHTPQSPLVRPRMYDYYGMDSY--------PV---GTNSVVAVISYSGYDMEDAM 647
Query: 794 VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGF 853
++N++S ERG I+ ++ K R D++V FG + LD DG
Sbjct: 648 IVNKSSWERGFAYGSVIKMESIDLSLKA----NRGGDNLV-FGIRPGDPNVKEKLDADGL 702
Query: 854 PFIGANLQSGDIVIGKY-ADSGADHSIKLKHTERGMVQKVVLSSNDDG 900
PF+G+ LQ GD ++G ++ ++ E G+V + L SND G
Sbjct: 703 PFVGSILQPGDPFYSYMNLNTGETFTVYYQNKEVGIVDNIKLCSNDRG 750
Score = 170 (64.9 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 77/275 (28%), Positives = 117/275 (42%)
Query: 500 PSHWGKICFLSTPDGENCGLVKNLG-----VTGLVSTSILEPIFEQLFNSGMEKLADDAS 554
P WG +C + TPDGE CGL+ ++ VT +V + L P+ L G+ + S
Sbjct: 379 PESWGFLCPVDTPDGEPCGLMNHMTAVCEIVTEMVPVTDLPPLLCAL---GVVPIDATPS 435
Query: 555 YSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAG 614
++V +DG +G + L+ TQ KR ++EV + G
Sbjct: 436 RPYAECYRVLLDGAVVGWVEWDLA-PQVAEALRRFKKQITQE--KRFPSRAEVVLIPMTG 492
Query: 615 R-ILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIE 673
+ L P L + KN LL +G E +GT E+ + + D+
Sbjct: 493 KPSLYPGLFIFTTPCRMVRPVKN-----LL-YGRKEWIGTLEQ----VFMNVATMESDV- 541
Query: 674 DKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
P TH EL +L + +IPF++H+ + R +YQ Q Q +GFP N R D
Sbjct: 542 --MPGVTTHQELFPHSILSVVANLIPFSDHNQSPRNMYQCQM-GKQTMGFPVYNYKDRSD 598
Query: 734 TLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHIL 766
+ L PQ PL R + D G Y G N ++
Sbjct: 599 NKLYLLHTPQSPLVRPRMYDYYGMDSYPVGTNSVV 633
Score = 78 (32.5 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 166 IGRIPVMVKSDLCWMKGVEKGDCDFDH------GGYFIIKGAEKV 204
+G +P+MVKS LC + + + H GGYFII G EKV
Sbjct: 22 VGFVPIMVKSKLCNLYNLSPQELIQHHEEEEEMGGYFIINGLEKV 66
Score = 39 (18.8 bits), Expect = 4.5e-16, Sum P(2) = 4.5e-16
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 34 FNEYGLVSHQINSYNEFIKNGL 55
F EYG+V H + + I L
Sbjct: 93 FTEYGVVMHCVKDEHSAINMNL 114
>TIGR_CMR|CPS_4769 [details] [associations]
symbol:CPS_4769 "DNA-directed RNA polymerase, beta
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_271413.1 STRING:Q47UV9 PRIDE:Q47UV9
GeneID:3523343 KEGG:cps:CPS_4769 PATRIC:21472355
BioCyc:CPSY167879:GI48-4775-MONOMER Uniprot:Q47UV9
Length = 1342
Score = 176 (67.0 bits), Expect = 1.8e-16, Sum P(5) = 1.8e-16
Identities = 80/307 (26%), Positives = 139/307 (45%)
Query: 807 SEHIRSYKAEVDNKEMQVKRR--SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
+E + K + D K+ +VKRR + D + G + KI +V + + ++Q GD
Sbjct: 1016 AEQFDNIKEDFD-KKFEVKRRKITQGDDLQPGVL--KIVKV-------YLAVKRHIQPGD 1065
Query: 865 IVIGKYADSGADHSI----KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
+ G++ + G ++ + + + G+ +VL N G S +++ Q+ LG
Sbjct: 1066 KMAGRHGNKGVISNVVPVEDMPYDQFGVPVDIVL--NPLGVP-SRMNIGQILETHLGMAC 1122
Query: 921 SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXX 980
+ G+K + LE+Q+ ++ + ++ + SRQ
Sbjct: 1123 RGI-GEK-INRMLEAQQEI-HKLRNFIQEVY---NVGESRQV-------VDVASFSDDEV 1169
Query: 981 XXCSGLKRYATPFATPSVDAITEQLHR-----AGFSKWGTERLYDGRTGEMVRSLIFIGP 1035
+G R P ATP+ D E+ + A + G L DGRTG + +G
Sbjct: 1170 LRLAGNLRAGLPIATPAFDGAAEKEIKELFVLADMPQSGQFVLTDGRTGREFERPVTVGY 1229
Query: 1036 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1095
+ +L H+ +DK+ R+TG +T+QP+ + +FGG +FGEME L A+GAA L E
Sbjct: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289
Query: 1096 RLFTLSD 1102
L SD
Sbjct: 1290 MLTVKSD 1296
Score = 110 (43.8 bits), Expect = 1.2e-09, Sum P(5) = 1.2e-09
Identities = 33/106 (31%), Positives = 57/106 (53%)
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMN-RASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
EL GQN +A GYN EDS++++ R ++E F + HI+ + ++ + +
Sbjct: 794 ELALGQNMRIAFMPWNGYNFEDSMLLSERVAIE-DRFTTIHIQELTCIARDTKLGSEEIT 852
Query: 829 SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG 874
+D + N G +S + + LD+ G +IGA + GDI++GK G
Sbjct: 853 AD-IPNVG--ESALSK---LDEAGVVYIGAEVNGGDILVGKVTPKG 892
Score = 88 (36.0 bits), Expect = 1.8e-16, Sum P(5) = 1.8e-16
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 494 DARYPHPSHWGKICFLSTPDGENCGLVKNL 523
+ R HP+H+G++C + TP+G N GL+ +L
Sbjct: 547 EVRDVHPTHYGRVCPIETPEGPNIGLINSL 576
Score = 67 (28.6 bits), Expect = 1.8e-16, Sum P(5) = 1.8e-16
Identities = 38/132 (28%), Positives = 61/132 (46%)
Query: 60 DSFGETIVEPGYD---PSK--KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHA 114
D GET +E + P K G E +Y S R G+ P F D+ +
Sbjct: 42 DPTGETGLEAAFRSIFPIKAYSGSSELQYVSYRLGE-----PLF---------DV--KEC 85
Query: 115 RLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQK-EV--LSDETTNIIIGRIPV 171
+++ +TYS+ ++VK++ VY K + K +EQ + E+ ++D T +I G V
Sbjct: 86 QIRGVTYSAPLRVKLRLVVY-DKEAAAGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERV 144
Query: 172 MVKSDLCWMKGV 183
+V S L GV
Sbjct: 145 IV-SQLHRSPGV 155
Score = 58 (25.5 bits), Expect = 1.8e-16, Sum P(5) = 1.8e-16
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 690 LLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
++ ++ +IPF HD A R L S QA+ P++RVD
Sbjct: 661 IISVAASLIPFLEHDDANRALMGSNMQR-QAV------PTLRVD 697
Score = 52 (23.4 bits), Expect = 1.8e-16, Sum P(5) = 1.8e-16
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 1133 YCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
Y + D GD ++ +P +L +E+ S+GI ++ D +
Sbjct: 1305 YKNLVD-GDHRMEPGIPESFNVLLKEIRSLGINIELDKD 1342
Score = 44 (20.5 bits), Expect = 3.3e-14, Sum P(5) = 3.3e-14
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 194 GYFIIKGAEKVFVAQ 208
G F+I G E+V V+Q
Sbjct: 134 GTFVINGTERVIVSQ 148
Score = 37 (18.1 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 129 VQFQVYTQKRVTSDKFKTGREQYIQKEVLSD 159
+ Q++T+ V D EQ KEV D
Sbjct: 930 IDVQIFTRDGVEKDARAVEIEQMQLKEVKKD 960
>UNIPROTKB|I3L6M3 [details] [associations]
symbol:LOC100737037 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:CU683880 EMBL:CU914657
Ensembl:ENSSSCT00000030129 OMA:LLNTTEC Uniprot:I3L6M3
Length = 232
Score = 215 (80.7 bits), Expect = 3.0e-16, P = 3.0e-16
Identities = 71/228 (31%), Positives = 111/228 (48%)
Query: 719 QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
QA+G N R+DTL + L YPQ+P+ +T + ++ +L GQNA
Sbjct: 4 QAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQNAT 52
Query: 779 VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKI 838
VAV + GY+ ED+LV+N+ASL+RG R ++ K + Q + +++
Sbjct: 53 VAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLD-AAT 111
Query: 839 QSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS-------GA---------DHSIKLK 882
+ I R + LD DG G +++ +++ K + G+ D I K
Sbjct: 112 RKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYK 171
Query: 883 HTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
++KV++SSN + + LRQ R P +GDKFSS HGQKG L
Sbjct: 172 GATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGKL 219
>UNIPROTKB|P21421 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=NAS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0020011 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 PANTHER:PTHR20856:SF3
EMBL:X75544 EMBL:X95275 EMBL:X52177 PIR:S72282
ProteinModelPortal:P21421 GenomeReviews:X95275_GR Uniprot:P21421
Length = 1024
Score = 137 (53.3 bits), Expect = 2.4e-13, Sum P(4) = 2.4e-13
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 1023 TGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1082
TG M+ + I + +Y +LIHM +DK ++R G LT+QP+ + GG +FGEME
Sbjct: 882 TGNMINNSICLNNIYYYKLIHMIKDKFRYRFIGLYSELTQQPIKGNTKQGGQRFGEMEVW 941
Query: 1083 CLIAHGAAANLHERLFT 1099
L A GA+ L + FT
Sbjct: 942 ALEAFGASY-LFKEFFT 957
Score = 98 (39.6 bits), Expect = 2.4e-13, Sum P(4) = 2.4e-13
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 916 LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
LGDK + HG KG++ ++ + P+ I PDI I+ + PSR GQ
Sbjct: 767 LGDKICNRHGHKGIISYISEINDIPYLNNKIQPDIFISAISIPSRINIGQ 816
Score = 85 (35.0 bits), Expect = 2.4e-13, Sum P(4) = 2.4e-13
Identities = 28/107 (26%), Positives = 48/107 (44%)
Query: 763 NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
N L E G N +V +LGY ED+++++R L ++ S H+ Y+ + N
Sbjct: 589 NSNLLNSEYSLGNNLLVGYGSYLGYEYEDAIIISRKILYNNLYTSLHLNIYEISL-NIIN 647
Query: 823 QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK 869
+ S +N K+ K + LD G G + + +I+I K
Sbjct: 648 NIPEICS---INLSKMYYK--NIKHLDKYGIIKEGTYILANNILISK 689
Score = 48 (22.0 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 242 VDMSK--FEDIKGGEK--VLS--VYFLSTEIPIWILFFALGVSSDKEIVNLIDF 289
+++SK +++IK +K ++ Y L+ I I L F + ++K ++N+I+F
Sbjct: 655 INLSKMYYKNIKHLDKYGIIKEGTYILANNILISKLMFMPFIFNNKSLINIINF 708
Score = 43 (20.2 bits), Expect = 2.4e-13, Sum P(4) = 2.4e-13
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 504 GKICFLSTPDGENCGLVKNL 523
G I ++T +G CGLV L
Sbjct: 368 GYISLINTNEGLTCGLVNYL 387
Score = 39 (18.8 bits), Expect = 8.7e-09, Sum P(4) = 8.7e-09
Identities = 27/111 (24%), Positives = 52/111 (46%)
Query: 685 LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
+ ++LL +IPF +++ + R L + H+ Q + P P++ + +++ F +
Sbjct: 465 IPFNYLLSFIENLIPFIHYNDSIRNLMSIKMHT-QIV--PIIYPNLS-NIITNYNFILNK 520
Query: 745 PLFRTMISDCLGKPGY-GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLV 794
L +IS G Y I+ R +L+N Q I +N + NQ L+
Sbjct: 521 YLNHLIISYQEGIVIYVSCIKIIIR-DLFNRQ-IIYYLNNYKKINQNILLI 569
>UNIPROTKB|I3LR52 [details] [associations]
symbol:I3LR52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR015712 Pfam:PF00562 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
GeneTree:ENSGT00690000102214 EMBL:CU683880
Ensembl:ENSSSCT00000028377 Uniprot:I3LR52
Length = 80
Score = 114 (45.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 29/85 (34%), Positives = 37/85 (43%)
Query: 940 PFTIQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXXCSGLKRYATPFATPSVD 999
PF GI PDI++NPH FPSR T G+ G Y T F V
Sbjct: 2 PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVL------DGRFHYGTAFGGSKVK 55
Query: 1000 AITEQLHRAGFSKWGTERLYDGRTG 1024
+ E L R G++ G + + G TG
Sbjct: 56 DVCEDLVRHGYNYLGKDYVTSGITG 80
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.419 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1173 1121 0.00089 123 3 11 22 0.37 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 91
No. of states in DFA: 632 (67 KB)
Total size of DFA: 527 KB (2241 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 87.42u 0.09s 87.51t Elapsed: 00:00:04
Total cpu time: 87.50u 0.10s 87.60t Elapsed: 00:00:04
Start: Tue May 21 04:36:05 2013 End: Tue May 21 04:36:09 2013